Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 86 of 117
Found at i:15569708 original size:19 final size:19
Alignment explanation
Indices: 15569666--15569708 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
15569656 TTAAAATAAG
* *
15569666 TAAAATAATAATTAAAGAT
1 TAAAATAATAAGTAAAAAT
* *
15569685 GAAAATAATTAGTAAAAAT
1 TAAAATAATAAGTAAAAAT
15569704 TAAAA
1 TAAAA
15569709 AAAATCTAAA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (19 bp):
TAAAATAATAAGTAAAAAT
Found at i:15569724 original size:17 final size:19
Alignment explanation
Indices: 15569697--15569737 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
15569687 AAATAATTAG
15569697 TAAAAATTAAAA-AAAATC
1 TAAAAATTAAAACAAAATC
15569715 TAAAAA-TAAAACAAAATC
1 TAAAAATTAAAACAAAATC
*
15569733 GAAAA
1 TAAAA
15569738 GGTAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.17
Consensus pattern (19 bp):
TAAAAATTAAAACAAAATC
Found at i:15571098 original size:69 final size:69
Alignment explanation
Indices: 15570997--15571179 Score: 226
Period size: 69 Copynumber: 2.6 Consensus size: 69
15570987 GGAATAAAAT
* * * * * * *
15570997 ATTCACAAAATTTCAAGTTTCGTAAAGGTTCTAAATTCACCAAGGTCTCCA-GTTCACAAGGACT
1 ATTCACAAGATTTCAAGTTTCCTAGAGATTCTAGATTCACAAAGGTCT-CAGGTTCACAAAGACT
15571061 TTCAA
65 TTCAA
* **
15571066 ATTCATAAGATTTCAAGTTTCCTAGAGATTCTAGATTCACAAAGGTCTCAGGTTCGTAAAGACTT
1 ATTCACAAGATTTCAAGTTTCCTAGAGATTCTAGATTCACAAAGGTCTCAGGTTCACAAAGACTT
15571131 TCAA
66 TCAA
*
15571135 ATTCACAAGATTTTGAAGTTTCGC-AGAGATTCTAGATTCACAAAG
1 ATTCACAAGA-TTTCAAGTTTC-CTAGAGATTCTAGATTCACAAAG
15571180 ATTTTTAGAT
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
68 2 0.02
69 65 0.66
70 31 0.31
71 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (69 bp):
ATTCACAAGATTTCAAGTTTCCTAGAGATTCTAGATTCACAAAGGTCTCAGGTTCACAAAGACTT
TCAA
Found at i:15571609 original size:54 final size:55
Alignment explanation
Indices: 15571533--15571791 Score: 195
Period size: 55 Copynumber: 4.7 Consensus size: 55
15571523 CAAAATAATC
* * * *
15571533 GAGATTGAATCACAAGTCAGAAAAATGTTTTGGACTGAG-TGAGATCGAATGACT
1 GAGATTGAACCATAAGTCAGAAAAATGATTTGGACTAAGCTGAGATCGAATGACT
* * **
15571587 GAGATTGAACCATAAGTTAGAAAAATGAATTGGACTAAGCCAAGATCGAATGA-T
1 GAGATTGAACCATAAGTCAGAAAAATGATTTGGACTAAGCTGAGATCGAATGACT
* ** * * * *
15571641 AGAGATCGAA-CATAAGTTTGGAAGATAATTTGGACTAAGCTGAGATC-AGATAACT
1 -GAGATTGAACCATAAGTCAGAAAAATGATTTGGACTAAGCTGAGATCGA-ATGACT
* * * ** * * * *
15571696 GAGATTGAACCATAAGTCAAAAAAATTATCTAAATTAAG-TCGAGATCAAATAACC
1 GAGATTGAACCATAAGTCAGAAAAATGATTTGGACTAAGCT-GAGATCGAATGACT
* ** * *
15571751 AAGATTGAACCACGAGTCTGAAAGATGATTTGGACTAAGCT
1 GAGATTGAACCATAAGTCAGAAAAATGATTTGGACTAAGCT
15571792 AAATTGAAAA
Statistics
Matches: 157, Mismatches: 40, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
53 1 0.01
54 76 0.48
55 78 0.50
56 2 0.01
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (55 bp):
GAGATTGAACCATAAGTCAGAAAAATGATTTGGACTAAGCTGAGATCGAATGACT
Found at i:15573034 original size:22 final size:22
Alignment explanation
Indices: 15573008--15573053 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
15572998 GTAAATAATG
15573008 GTGATTCATACAAAAGAGGAAT
1 GTGATTCATACAAAAGAGGAAT
15573030 GTGATTCATACAAAAGAGGAAT
1 GTGATTCATACAAAAGAGGAAT
15573052 GT
1 GT
15573054 CATAAAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.09, G:0.24, T:0.24
Consensus pattern (22 bp):
GTGATTCATACAAAAGAGGAAT
Found at i:15576066 original size:18 final size:17
Alignment explanation
Indices: 15576040--15576073 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
15576030 TTGAAAATAT
*
15576040 TTTTGAAAATTTTATTC
1 TTTTGAAAAGTTTATTC
15576057 TTTTGAAAAAGTTTATT
1 TTTTG-AAAAGTTTATT
15576074 AAATCTCCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTGAAAAGTTTATTC
Found at i:15577092 original size:51 final size:51
Alignment explanation
Indices: 15577029--15577175 Score: 186
Period size: 51 Copynumber: 2.9 Consensus size: 51
15577019 TTGATTTCAT
* *
15577029 TTTAATGAGAATTGATTCTAGAATTAAATCCCAAAAATCTCTTAACATCAA
1 TTTAATGTGAATTGATTCTAGAATTAAATCCCAAAAATCTCTCAACATCAA
* * * * * *
15577080 TTTAATTTGAATTGACTCTAGGATGAAATCCTAAAAATCTCTCAACATCAT
1 TTTAATGTGAATTGATTCTAGAATTAAATCCCAAAAATCTCTCAACATCAA
* * * *
15577131 TTTAATGTGAATTGCTTTTGGAATTAAATCTCAAAAATCTCTCAA
1 TTTAATGTGAATTGATTCTAGAATTAAATCCCAAAAATCTCTCAA
15577176 TTATGGTTGA
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 79 1.00
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.36
Consensus pattern (51 bp):
TTTAATGTGAATTGATTCTAGAATTAAATCCCAAAAATCTCTCAACATCAA
Found at i:15580510 original size:11 final size:11
Alignment explanation
Indices: 15580494--15580576 Score: 68
Period size: 11 Copynumber: 7.8 Consensus size: 11
15580484 GATGTCAATG
15580494 ATATTTTAGTA
1 ATATTTTAGTA
15580505 ATATTTTAGTA
1 ATATTTTAGTA
15580516 ATA--TTA-TA
1 ATATTTTAGTA
*
15580524 A-A-TTGATGATA
1 ATATTTTA-G-TA
* *
15580535 TTATTATAGTA
1 ATATTTTAGTA
* *
15580546 ATATTTCAATA
1 ATATTTTAGTA
15580557 ATATTTTAGTA
1 ATATTTTAGTA
15580568 ATATTTTAG
1 ATATTTTAG
15580577 ATTGATTTGA
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
7 1 0.02
8 5 0.09
9 3 0.05
11 43 0.77
12 2 0.04
13 2 0.04
ACGTcount: A:0.40, C:0.01, G:0.08, T:0.51
Consensus pattern (11 bp):
ATATTTTAGTA
Found at i:15584830 original size:14 final size:14
Alignment explanation
Indices: 15584813--15584842 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15584803 TCATGCTAAT
15584813 ACAAACATGCACAC
1 ACAAACATGCACAC
*
15584827 ACAAACATGCTCAC
1 ACAAACATGCACAC
15584841 AC
1 AC
15584843 TATTGTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.07, T:0.10
Consensus pattern (14 bp):
ACAAACATGCACAC
Found at i:15587726 original size:15 final size:14
Alignment explanation
Indices: 15587706--15587744 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
15587696 AATTATTTTT
15587706 AAATAAAAAAAAATA
1 AAATAAAAAAAAA-A
**
15587721 AAATAAAAAGTAAA
1 AAATAAAAAAAAAA
15587735 AAATAAAAAA
1 AAATAAAAAA
15587745 TCTCGTCGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.13
Consensus pattern (14 bp):
AAATAAAAAAAAAA
Found at i:15587744 original size:7 final size:7
Alignment explanation
Indices: 15587706--15587745 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
15587696 AATTATTTTT
15587706 AAATAAA
1 AAATAAA
*
15587713 AAAAAATA
1 AAATAA-A
15587721 AAATAAA
1 AAATAAA
*
15587728 AAGTAAA
1 AAATAAA
15587735 AAATAAA
1 AAATAAA
15587742 AAAT
1 AAAT
15587746 CTCGTCGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 22 0.79
8 6 0.21
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (7 bp):
AAATAAA
Found at i:15587986 original size:121 final size:125
Alignment explanation
Indices: 15587876--15588158 Score: 316
Period size: 129 Copynumber: 2.3 Consensus size: 125
15587866 TTTTAATTTT
* * *
15587876 CATAATAATAAATTGCTTAAATTAAAAAAAAAAAAAAAGGTG-CTGT-CTGTAAACTGGTCA-TT
1 CATAATAATAAATTGCTTAAA-T---AAAAAAAAAAAAGGTGTATATGCTGTAAAATGGT-AGTT
*
15587938 TGAATGCTTT-A-A-A-T-AT-AGTAATAACTAATAAGTTATCAAATTGGATTAATTTTAATTTT
61 TGAATGCTTTAATATATTAATAACTAATAACTAATAAGTTATCAAATTGGATTAATTTTAATTTT
* * *
15587997 CATAATAATAAATTGCCTTAAATAAAAAAAAATAGGGTGTTATATGGTGTAAAATGGTAGTTTGA
1 CATAATAATAAATTG-CTTAAATAAAAAAAAAAAAGGTG-TATATGCTGTAAAATGGTAGTTTGA
*
15588062 ATGCTTTACATATATTAATAACTAATAAACTAATAAGTTATTAAATTGGATTAATTTTAATTTT
64 ATGCTTTA-ATATATTAATAACTAAT-AACTAATAAGTTATCAAATTGGATTAATTTTAATTTT
* *
15588126 CATAATAATAAATTGCCTTGAA-AAGAAAAAAAA
1 CATAATAATAAATTG-CTTAAATAAAAAAAAAAA
15588159 TTAAATTATG
Statistics
Matches: 138, Mismatches: 11, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
118 14 0.10
120 3 0.02
121 38 0.28
122 6 0.04
123 1 0.01
124 1 0.01
125 1 0.01
126 1 0.01
127 2 0.01
128 14 0.10
129 57 0.41
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.36
Consensus pattern (125 bp):
CATAATAATAAATTGCTTAAATAAAAAAAAAAAAGGTGTATATGCTGTAAAATGGTAGTTTGAAT
GCTTTAATATATTAATAACTAATAACTAATAAGTTATCAAATTGGATTAATTTTAATTTT
Found at i:15588660 original size:20 final size:18
Alignment explanation
Indices: 15588637--15588682 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
15588627 TAATTTAACT
*
15588637 TTTTTAAATCATATTTTTTA
1 TTTTTAAAT--TATATTTTA
*
15588657 TTTTAAAATTATATTTTA
1 TTTTTAAATTATATTTTA
15588675 TTTTTAAA
1 TTTTTAAA
15588683 AATCCATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 15 0.65
20 8 0.35
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTAAATTATATTTTA
Found at i:15588693 original size:21 final size:20
Alignment explanation
Indices: 15588642--15588701 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 20
15588632 TAACTTTTTT
*
15588642 AAATCATATTTT-TTATTTTA
1 AAATCATATTTTATT-TTTAA
*
15588662 AAATTATATTTTATTTTTAA
1 AAATCATATTTTATTTTTAA
15588682 AAATCCATATTTTGATTTTT
1 AAAT-CATATTTT-ATTTTT
15588702 TTAAAGAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 19 0.56
21 9 0.26
22 6 0.18
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (20 bp):
AAATCATATTTTATTTTTAA
Found at i:15588743 original size:21 final size:19
Alignment explanation
Indices: 15588719--15588767 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 19
15588709 AATTTTTAAG
15588719 ATTTTTAAAAATGTTAAATAT
1 ATTTTTAAAAAT-TTAAAT-T
*
15588740 ATTTTTTCAAAATTTAAATT
1 A-TTTTTAAAAATTTAAATT
15588760 -TTTTTAAA
1 ATTTTTAAA
15588768 TTTCAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 7 0.28
20 1 0.04
21 7 0.28
22 10 0.40
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
ATTTTTAAAAATTTAAATT
Found at i:15589209 original size:32 final size:32
Alignment explanation
Indices: 15589147--15589209 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
15589137 AAAAATATTG
* *
15589147 AAAATTTATTAAAATTTTACAATATTAAAAAC
1 AAAATTTATTAAAATGTTAAAATATTAAAAAC
15589179 AAAATATT-TTAAAATGTTAAAAT-TTGAAAAA
1 AAAAT-TTATTAAAATGTTAAAATATT-AAAAA
15589210 ATATAAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 2 0.07
32 23 0.85
33 2 0.07
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (32 bp):
AAAATTTATTAAAATGTTAAAATATTAAAAAC
Found at i:15589375 original size:23 final size:22
Alignment explanation
Indices: 15589319--15589379 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 22
15589309 AATTAATAAA
* *
15589319 ATTTTTAAAAACT-AAAATATG
1 ATTTTAAAAAATTAAAAATATG
*
15589340 ATTTTAAAAAATTTAAAAATATT
1 ATTTTAAAAAA-TTAAAAATATG
* *
15589363 ATTTTTAAGAATTAAAA
1 ATTTTAAAAAATTAAAA
15589380 TGTTTAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 10 0.30
22 7 0.21
23 16 0.48
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (22 bp):
ATTTTAAAAAATTAAAAATATG
Found at i:15596027 original size:18 final size:20
Alignment explanation
Indices: 15595996--15596034 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
15595986 AAAATATAAA
15595996 AATAAGAACTAATAAAAATT
1 AATAAGAACTAATAAAAATT
*
15596016 AATAA-AAC-AATAAATATT
1 AATAAGAACTAATAAAAATT
15596034 A
1 A
15596035 TTTTAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 3 0.17
20 5 0.28
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.26
Consensus pattern (20 bp):
AATAAGAACTAATAAAAATT
Found at i:15599590 original size:6 final size:6
Alignment explanation
Indices: 15599550--15599741 Score: 72
Period size: 6 Copynumber: 31.2 Consensus size: 6
15599540 AAAAGCCTAA
* * *
15599550 TTTTAT ATTTTAT CTTATATT TATTTAT TTATTAT TTTTAT CTTTAT GTTTAT
1 TTTTAT -TTTTAT -TTTTA-T T-TTTAT TT-TTAT TTTTAT TTTTAT TTTTAT
*** * * * * * *
15599603 GAATGT ATTTAT TATTAT ATTTTAT ATTTAT CTTTGTAT TTATCT TTCTTAT
1 TTTTAT TTTTAT TTTTAT -TTTTAT TTTTAT -TTT-TAT TTTTAT TT-TTAT
* * *
15599655 CTTTAT TTTTAT GTTTA- -TTTA- TTTTAT TCATTTAT GTTTA- TTTTA-
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T--TTTAT TTTTAT TTTTAT
* * * *
15599700 TTTTA- TTTTAT TTTTAT CTTTAT TTTGAT CTTTAT CTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T
15599742 GTATCTCATC
Statistics
Matches: 141, Mismatches: 32, Indels: 25
0.71 0.16 0.13
Matches are distributed among these distances:
4 4 0.03
5 18 0.13
6 76 0.54
7 31 0.22
8 12 0.09
ACGTcount: A:0.21, C:0.05, G:0.04, T:0.70
Consensus pattern (6 bp):
TTTTAT
Found at i:15599596 original size:12 final size:12
Alignment explanation
Indices: 15599551--15599740 Score: 86
Period size: 12 Copynumber: 14.9 Consensus size: 12
15599541 AAAGCCTAAT
15599551 TTTATATTTTATC
1 TTTAT-TTTTATC
*
15599564 TTATATTTATTTATT
1 TT-TA-TT-TTTATC
15599579 TATTATTTTTATC
1 T-TTATTTTTATC
* *
15599592 TTTATGTTTATGAA
1 TTTATTTTTAT--C
*
15599606 TGTATTTATTAT-
1 TTTATTT-TTATC
* *
15599618 TATA-TTTTATA
1 TTTATTTTTATC
15599629 TTTATCTTTGTAT-
1 TTTAT-TTT-TATC
*
15599642 TTATCTTTCTTATC
1 TT-TATTT-TTATC
*
15599656 TTTATTTTTATG
1 TTTATTTTTATC
15599668 TTTATTTATTTTATTC
1 TTTA--T-TTTTA-TC
*
15599684 ATTTATGTTTAT-
1 -TTTATTTTTATC
15599696 TTTA-TTTTAT-
1 TTTATTTTTATC
15599706 TTTATTTTTATC
1 TTTATTTTTATC
*
15599718 TTTATTTTGATC
1 TTTATTTTTATC
*
15599730 TTTATCTTTAT
1 TTTATTTTTAT
15599741 TGTATCTCAT
Statistics
Matches: 139, Mismatches: 17, Indels: 43
0.70 0.09 0.22
Matches are distributed among these distances:
10 13 0.09
11 15 0.11
12 40 0.29
13 23 0.17
14 23 0.17
15 19 0.14
16 2 0.01
17 4 0.03
ACGTcount: A:0.22, C:0.05, G:0.04, T:0.69
Consensus pattern (12 bp):
TTTATTTTTATC
Found at i:15599665 original size:21 final size:21
Alignment explanation
Indices: 15599629--15599732 Score: 67
Period size: 21 Copynumber: 5.0 Consensus size: 21
15599619 ATATTTTATA
* *
15599629 TTTATCTTTGTATTTATCTTT
1 TTTATCTTTATTTTTATCTTT
* *
15599650 CTTATCTTTATTTTTATGTTT
1 TTTATCTTTATTTTTATCTTT
*
15599671 ATTTAT-TTTATTCATTTATGTTTAT
1 -TTTATCTTTATT--TTTAT-CTT-T
15599696 TTTAT-TTTA-TTTTA---TT
1 TTTATCTTTATTTTTATCTTT
*
15599712 TTTATCTTTATTTTGATCTTT
1 TTTATCTTTATTTTTATCTTT
15599733 ATCTTTATTG
Statistics
Matches: 66, Mismatches: 7, Indels: 20
0.71 0.08 0.22
Matches are distributed among these distances:
16 6 0.09
17 5 0.08
18 4 0.06
21 29 0.44
22 4 0.06
23 6 0.09
24 11 0.17
25 1 0.02
ACGTcount: A:0.17, C:0.07, G:0.04, T:0.72
Consensus pattern (21 bp):
TTTATCTTTATTTTTATCTTT
Found at i:15599677 original size:4 final size:5
Alignment explanation
Indices: 15599614--15599741 Score: 75
Period size: 6 Copynumber: 24.0 Consensus size: 5
15599604 AATGTATTTA
* * * *
15599614 TTATT ATATT TTATAT TTATCT TTGTAT TTATC TT-TC TTATCT TTATTT
1 TTATT TTATT TTAT-T TTAT-T TTAT-T TTATT TTATT TTAT-T TTA-TT
*
15599663 TTATGT TTA-T TTATT TTA-T TCA-T TTATGT TTATT TTATT TTATT TTATTT
1 TTAT-T TTATT TTATT TTATT TTATT TTAT-T TTATT TTATT TTATT TTA-TT
15599713 TTATCT TTATT TTGATCT TTATCT TTATT
1 TTAT-T TTATT TT-AT-T TTAT-T TTATT
15599742 GTATCTCATC
Statistics
Matches: 101, Mismatches: 10, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
4 14 0.14
5 34 0.34
6 49 0.49
7 4 0.04
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.71
Consensus pattern (5 bp):
TTATT
Found at i:15599682 original size:64 final size:64
Alignment explanation
Indices: 15599552--15599681 Score: 153
Period size: 64 Copynumber: 2.1 Consensus size: 64
15599542 AAGCCTAATT
* * *
15599552 TTATATTTTATCTTATATTTATTTATTTATTATTTTTATCTTTATGTTTATGAATGTATTTATTA
1 TTATATTTTATATTATATTTATGTATTTATTATTCTTATCTTTATGTTTATG-ATGTATTTATTA
* *
15599617 TTATATTTTATATT-TATCTT-TGTATTTATCT-TTCTTATCTTTATTTTTATG-TTTATTTATT
1 TTATATTTTATATTATAT-TTATGTATTTAT-TATTCTTATCTTTATGTTTATGATGTATTTATT
15599678 -
64 A
15599678 TTAT
1 TTAT
15599682 TCATTTATGT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
61 4 0.07
62 9 0.16
64 29 0.50
65 16 0.28
ACGTcount: A:0.23, C:0.05, G:0.04, T:0.68
Consensus pattern (64 bp):
TTATATTTTATATTATATTTATGTATTTATTATTCTTATCTTTATGTTTATGATGTATTTATTA
Found at i:15599735 original size:18 final size:17
Alignment explanation
Indices: 15599620--15599747 Score: 99
Period size: 18 Copynumber: 7.6 Consensus size: 17
15599610 TTTATTATTA
*
15599620 TATTTTATATTTATCTT
1 TATTTTATCTTTATCTT
*
15599637 TGTATTTATC-TT-TC-T
1 TAT-TTTATCTTTATCTT
* *
15599652 TATCTTTATTTTTATGTT
1 TAT-TTTATCTTTATCTT
15599670 TA-TTTAT-TTTATTCATT
1 TATTTTATCTTTA-TC-TT
15599687 TATGTTTAT-TTTAT-TT
1 TAT-TTTATCTTTATCTT
*
15599703 TATTTTATTTTTATCTT
1 TATTTTATCTTTATCTT
15599720 TATTTTGATCTTTATCTT
1 TATTTT-ATCTTTATCTT
*
15599738 TATTGTATCT
1 TATTTTATCT
15599748 CATCTATTTT
Statistics
Matches: 91, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
15 17 0.19
16 20 0.22
17 21 0.23
18 24 0.26
19 9 0.10
ACGTcount: A:0.19, C:0.07, G:0.04, T:0.70
Consensus pattern (17 bp):
TATTTTATCTTTATCTT
Found at i:15599772 original size:62 final size:61
Alignment explanation
Indices: 15599651--15599772 Score: 133
Period size: 62 Copynumber: 2.0 Consensus size: 61
15599641 TTTATCTTTC
* * * * *
15599651 TTATCTTTATTTTTATGTTTATTTATTTTATTCATTTATGTTTATTTTATTTTATTTTATTT
1 TTATCTTTATTTTGATCTTTATTTATTGTATTCATCTATGTTTA-TTTATTTTAGTTTATTT
15599713 TTATCTTTATTTTGATCTTTATCTTTATTGTATCTCATCTAT-TTTA-TTATTGTT-GTTTAT
1 TTATCTTTATTTTGATCTTTA--TTTATTGTAT-TCATCTATGTTTATTTATT-TTAGTTTAT
15599773 CTTAAAAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
62 29 0.57
63 2 0.04
64 13 0.25
65 7 0.14
ACGTcount: A:0.19, C:0.07, G:0.05, T:0.70
Consensus pattern (61 bp):
TTATCTTTATTTTGATCTTTATTTATTGTATTCATCTATGTTTATTTATTTTAGTTTATTT
Found at i:15600622 original size:5 final size:5
Alignment explanation
Indices: 15600612--15600654 Score: 56
Period size: 5 Copynumber: 9.2 Consensus size: 5
15600602 CCCATTTTGG
*
15600612 TTATT TTATT TTA-T TTGTT TTATT TTA-- TTATT TTATT TTATT T
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT T
15600655 GTTAATTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 3 0.09
4 3 0.09
5 27 0.82
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:15600632 original size:14 final size:14
Alignment explanation
Indices: 15600615--15600657 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
15600605 ATTTTGGTTA
15600615 TTTTATTTTATTTG
1 TTTTATTTTATTTG
*
15600629 TTTTATTTTA-TTA
1 TTTTATTTTATTTG
15600642 TTTTATTTTATTTG
1 TTTTATTTTATTTG
15600656 TT
1 TT
15600658 AATTTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (14 bp):
TTTTATTTTATTTG
Found at i:15600647 original size:13 final size:13
Alignment explanation
Indices: 15600612--15600708 Score: 67
Period size: 13 Copynumber: 7.2 Consensus size: 13
15600602 CCCATTTTGG
15600612 TTATTTTATTTTA
1 TTATTTTATTTTA
*
15600625 TTTGTTTTATTTTA
1 -TTATTTTATTTTA
15600639 TTATTTTATTTTA
1 TTATTTTATTTTA
*
15600652 TT-TGTTAATTTTAA
1 TTAT-TTTATTTT-A
15600666 TTAATTTT-TTTGGTAA
1 TT-ATTTTATTT--T-A
*
15600682 ATATTTT-TTTTA
1 TTATTTTATTTTA
15600694 -TATATTTATTTTA
1 TTAT-TTTATTTTA
15600707 TT
1 TT
15600709 TGTGTAATTT
Statistics
Matches: 69, Mismatches: 5, Indels: 18
0.75 0.05 0.20
Matches are distributed among these distances:
11 3 0.04
12 5 0.07
13 27 0.39
14 19 0.28
15 10 0.14
16 5 0.07
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:15600668 original size:27 final size:27
Alignment explanation
Indices: 15600612--15600673 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
15600602 CCCATTTTGG
*
15600612 TTATTTTATTTTATTTGTTTTATTTTA
1 TTATTTTATTTTATTTGTTTAATTTTA
15600639 TTATTTTATTTTATTTG-TTAATTTTAA
1 TTATTTTATTTTATTTGTTTAATTTT-A
15600666 TTAATTTT
1 TT-ATTTT
15600674 TTTGGTAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 7 0.22
27 20 0.62
28 5 0.16
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (27 bp):
TTATTTTATTTTATTTGTTTAATTTTA
Found at i:15601029 original size:99 final size:98
Alignment explanation
Indices: 15600825--15601108 Score: 344
Period size: 99 Copynumber: 2.9 Consensus size: 98
15600815 TTAAATCTTA
* **
15600825 ATGAATTCTACCAAATAATTGAAGAATTTCATAATGAAGTTTTTGTAAAAAAAAAATTATC--T-
1 ATGAATTCTACCAAATAATTGAAGAATTTCATAATGAAATTTTTGTAAAAAAAAAAAAATCAATC
*
15600887 TATGAAATGATTGAAGGATTTAAATATTAAATT
66 TATCAAATGATTGAAGGATTTAAATATTAAATT
* * ** * *
15600920 ATGATTTCTACCAAACAATTGCCGAATTTGAAAATGAAATTTTTGTAAAAAAAAAAAAATCAATC
1 ATGAATTCTACCAAATAATTGAAGAATTTCATAATGAAATTTTTGTAAAAAAAAAAAAATCAATC
*
15600985 -ATACTAAATGATTGAAGGATTTAAATATTTAATT
66 TAT-C-AAATGATTGAAGGATTTAAATATTAAATT
* * * * **
15601019 GTGAATTCTACTAAATAATTGAAGAATTTCATAATG-AATTTTTTTAAAAAATAAAATTTCAATT
1 ATGAATTCTACCAAATAATTGAAGAATTTCATAATGAAATTTTTGTAAAAAAAAAAAAATCAA-T
*
15601083 CTATCAAATGATTGGAGGATTTAAAT
65 CTATCAAATGATTGAAGGATTTAAAT
15601109 CTCTAAGTTA
Statistics
Matches: 158, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
95 52 0.33
97 3 0.02
98 42 0.27
99 59 0.37
100 2 0.01
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (98 bp):
ATGAATTCTACCAAATAATTGAAGAATTTCATAATGAAATTTTTGTAAAAAAAAAAAAATCAATC
TATCAAATGATTGAAGGATTTAAATATTAAATT
Found at i:15605128 original size:74 final size:72
Alignment explanation
Indices: 15604911--15605120 Score: 189
Period size: 74 Copynumber: 2.9 Consensus size: 72
15604901 GTAAGGTCAC
* ** * *
15604911 ATTTTTCCAAAAATTATTTTCTTAAAATTAC-AAAACCCTCTA-ATA-TGTTAGTTTTATTTT-T
1 ATTTTT-CAAAAATCATTTT-TT-AAATTACAAAAACATTCAATATATTGGTAGTTTTATTTTCT
15604972 AAATCAA-TT
63 AAATCAATTT
* ** * *
15604981 ATTTTTCAAATATCATTTTTTAAATTTTAAAACCATTCAATATATTGGTAAGGTTTTATTTTCAA
1 ATTTTTCAAAAATCATTTTTTAAATTACAAAAACATTCAATATATTGGT-A-GTTTTATTTTCTA
15605046 AATCAATTT
64 AATCAATTT
* * *
15605055 ATTTTTCAAAAATCA-TTTTTAAATTCACAAAAACTTTCCAATATGTTTGTAGTTTTATCTTTCT
1 ATTTTTCAAAAATCATTTTTTAAATT-ACAAAAACATT-CAATATATTGGTAGTTTTAT-TTTCT
15605119 AA
63 AA
15605121 TTTAATTTTT
Statistics
Matches: 112, Mismatches: 18, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
67 5 0.04
68 9 0.08
69 14 0.12
70 9 0.08
71 1 0.01
72 10 0.09
73 24 0.21
74 30 0.27
75 10 0.09
ACGTcount: A:0.36, C:0.12, G:0.04, T:0.48
Consensus pattern (72 bp):
ATTTTTCAAAAATCATTTTTTAAATTACAAAAACATTCAATATATTGGTAGTTTTATTTTCTAAA
TCAATTT
Found at i:15606087 original size:18 final size:18
Alignment explanation
Indices: 15606064--15606124 Score: 88
Period size: 18 Copynumber: 3.4 Consensus size: 18
15606054 AGCATAAATC
15606064 AAATAAAATGTAAAGATA
1 AAATAAAATGTAAAGATA
*
15606082 AAATAAAATGTGAAGAT-
1 AAATAAAATGTAAAGATA
*
15606099 AAAGAAAATGTAAAGATA
1 AAATAAAATGTAAAGATA
*
15606117 AACTAAAA
1 AAATAAAA
15606125 AGAAAATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 15 0.41
18 22 0.59
ACGTcount: A:0.66, C:0.02, G:0.13, T:0.20
Consensus pattern (18 bp):
AAATAAAATGTAAAGATA
Found at i:15606108 original size:17 final size:17
Alignment explanation
Indices: 15606068--15606118 Score: 75
Period size: 17 Copynumber: 2.9 Consensus size: 17
15606058 TAAATCAAAT
*
15606068 AAAATGTAAAGATAAAAT
1 AAAATGTAAAGAT-AAAG
*
15606086 AAAATGTGAAGATAAAG
1 AAAATGTAAAGATAAAG
15606103 AAAATGTAAAGATAAA
1 AAAATGTAAAGATAAA
15606119 CTAAAAAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 18 0.60
18 12 0.40
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.20
Consensus pattern (17 bp):
AAAATGTAAAGATAAAG
Found at i:15606526 original size:33 final size:32
Alignment explanation
Indices: 15606482--15606610 Score: 120
Period size: 33 Copynumber: 3.9 Consensus size: 32
15606472 TCATGACCTG
** *
15606482 GACTAAGCTAAAGTTTGAGAATGAAATGACTTA
1 GACTAA-CTAAAGTCAGAAAATGAAATGACTTA
*
15606515 GACTGAACTAAAGTCAAAAAATGAAATGACTTA
1 GACT-AACTAAAGTCAGAAAATGAAATGACTTA
* *
15606548 TACTAAGCCT-AAGT-TGAAAAATGAAATGACTT-
1 GACTAA--CTAAAGTCAG-AAAATGAAATGACTTA
15606580 GAACTAAACTAAAGTCAGAAAATGAAATGAC
1 G-ACT-AACTAAAGTCAGAAAATGAAATGAC
15606611 AAATTGAACA
Statistics
Matches: 79, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
32 4 0.05
33 68 0.86
34 7 0.09
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.23
Consensus pattern (32 bp):
GACTAACTAAAGTCAGAAAATGAAATGACTTA
Found at i:15606843 original size:97 final size:100
Alignment explanation
Indices: 15606687--15606893 Score: 232
Period size: 97 Copynumber: 2.1 Consensus size: 100
15606677 GTCTAAATTG
* * * *
15606687 AAGTCGAAAAAATGATATAACTTGAATTGAACTAAAGTAAAAAAATGATATGACATGGACT-AGT
1 AAGTCGAAAAAATGATATAACTTGAACTGAACCAAAGTAAAAAAATGAGATGACATGGACTAAGC
*
15606751 CTAAGTCGAA-AAATGATATGA-TCT-GATTAAGCCA
66 CTAAGT-GAAGAAATGAAATGACT-TAGATTAAGCCA
* * *
15606785 AAGTCGAAAAAA-GATATCACTTGGACT-AAGCCAAAGTCAAAAAATGAGATGA-ATTGGACTAA
1 AAGTCGAAAAAATGATATAACTTGAACTGAA-CCAAAGTAAAAAAATGAGATGACA-TGGACTAA
* *
15606847 GCCTAAGTTAAGAAATGAAATGACTTAGATTAAGCCT
64 GCCTAAGTGAAGAAATGAAATGACTTAGATTAAGCCA
15606884 AAGTC-AAAAA
1 AAGTCGAAAAA
15606894 GTAATGTGAA
Statistics
Matches: 93, Mismatches: 10, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
96 3 0.03
97 39 0.42
98 36 0.39
99 15 0.16
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.23
Consensus pattern (100 bp):
AAGTCGAAAAAATGATATAACTTGAACTGAACCAAAGTAAAAAAATGAGATGACATGGACTAAGC
CTAAGTGAAGAAATGAAATGACTTAGATTAAGCCA
Found at i:15607051 original size:33 final size:33
Alignment explanation
Indices: 15606629--15607269 Score: 371
Period size: 33 Copynumber: 19.7 Consensus size: 33
15606619 CAGAAGTTAG
* *
15606629 AAAATTATATGACTTGGATTGACCCAAAGT-AA
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
* * ****
15606661 AAAATGATATGATTTGG-TCTAAATTGAAGTCGAA
1 AAAATGATATGACTTGGAT-TGAGCCAAAGTC-AA
* * * * *
15606695 AAAATGATATAACTTGAATTGAACTAAAGTAAA
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
* * * * *
15606728 AAAATGATATGACATGGACT-AGTCTAAGTCGA
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
*
15606760 AAAATGATATGA-TCT-GATTAAGCCAAAGTCGAA
1 AAAATGATATGACT-TGGATTGAGCCAAAGTC-AA
* * *
15606793 AAAA-GATATCACTTGGACTAAGCCAAAGTCAA
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
* * * * * *
15606825 AAAATGAGATGAATTGGACTAAGCCTAAGTTAA
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
* * * * *
15606858 GAAATGAAATGACTTAGATTAAGCCTAAGTCAA
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
* * * * * * * *
15606891 AAAGTAATGTGAATTAGACTGAGCCTAAGTTAA
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
* * * * * ***
15606924 AAGATGAGATGACTCGCATTAAGCCAAAGTTTG
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
* * * *
15606957 GAAATGAGATGACTTGAATTGAGCCAAAGT-TA
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
* * * * **
15606989 AAAATGAGATGACTTTGACTAAGTTAAAGTCAA
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
* * *
15607022 AAAATGAAATGATTTGGATTGAGCCAAAGTCAG
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
** *
15607055 AAAATGATATGACTTGGACTT-AGTAAAAGTAAA
1 AAAATGATATGACTTGGA-TTGAGCCAAAGTCAA
* * * *
15607088 AAAATGAGATGGCTTTTAGATTGAGCCAAAGT--T
1 AAAATGATATGAC--TTGGATTGAGCCAAAGTCAA
*
15607121 AAAA--A-ATGACTTGGATTGAGCCAAAG-C-T
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
15607149 AAAATGATATGACTTGGATTGAGCCAAAG-CTAA
1 AAAATGATATGACTTGGATTGAGCCAAAGTC-AA
* * * * **
15607182 AAAATGATATGGCTTGGACTGATCCAATGTTGA
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
* * *
15607215 AAAATAATATGATTTGGATTAAGCCAAAGT-AA
1 AAAATGATATGACTTGGATTGAGCCAAAGTCAA
*
15607247 AAAAGGATATGACTTGGATTGAG
1 AAAATGATATGACTTGGATTGAG
15607270 TCTAAGTTGA
Statistics
Matches: 467, Mismatches: 120, Indels: 44
0.74 0.19 0.07
Matches are distributed among these distances:
28 20 0.04
30 5 0.01
31 27 0.06
32 105 0.22
33 270 0.58
34 28 0.06
35 12 0.03
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.26
Consensus pattern (33 bp):
AAAATGATATGACTTGGATTGAGCCAAAGTCAA
Found at i:15607097 original size:164 final size:160
Alignment explanation
Indices: 15606637--15607152 Score: 409
Period size: 164 Copynumber: 3.2 Consensus size: 160
15606627 AGAAAATTAT
* * * *
15606637 ATGACTTGGATTGACCCAAAGTAAAAAATGATATGATTTGGTCTAAATTGAAGTCGAAAAAATGA
1 ATGACTTGGATTGAGCCAAAGTAAAAAATGAGATGATTT-GACTAAGTT-AAGTC-AAAAAATGA
* * * * * * * **
15606702 TATAACTTGAATTGAACTAAAGTAAAAAAATGATATGACATGGAC-TAGTCTAAGTCGAAAAATG
63 AATGACTTGGATTGAGCCAAAGT-CAAAAATGATATGACTTGGACTTAGTCTAAGTAAAAAAATG
* *
15606766 ATATGATCTGATTAAGCCAAAGTCGAAAAAAGAT
127 AGATGATCTGATTAAGCCAAAGTCGAAAAAAGAG
* * * * * * *
15606800 ATCACTTGGACTAAGCCAAAGTCAAAAAATGAGATGAATTGGACTAAGCCTAAGTTAAGAAATGA
1 ATGACTTGGATTGAGCCAAAGT-AAAAAATGAGATG-ATTTGACTAAG-TTAAGTCAAAAAATGA
* * * * * * * * * * *
15606865 AATGACTTAGATTAAGCCTAAGTCAAAAAGTAATGTGAATTAGACTGAGCCTAAGTTAAAAGATG
63 AATGACTTGGATTGAGCCAAAGTCAAAAA-TGATATGACTTGGACTTAGTCTAAGTAAAAAAATG
* * *
15606930 AGATGA-CTCGCATTAAGCCAAAGTTTG-GAAATGAG
127 AGATGATCT-G-ATTAAGCCAAAG-TCGAAAAAAGAG
* *
15606965 ATGACTTGAATTGAGCCAAAGTTAAAAATGAGATGACTTTGACTAAGTTAAAGTCAAAAAATGAA
1 ATGACTTGGATTGAGCCAAAGTAAAAAATGAGATGA-TTTGACTAAGTT-AAGTCAAAAAATGAA
* **
15607030 ATGATTTGGATTGAGCCAAAGTCAGAAAATGATATGACTTGGACTTAGTAAAAGTAAAAAAATGA
64 ATGACTTGGATTGAGCCAAAGTCA-AAAATGATATGACTTGGACTTAGTCTAAGTAAAAAAATGA
* * * *
15607095 GATGGCTTTTAGATTGAGCCAAAGT---TAAAA-A-
128 GAT-G-ATCT-GATTAAGCCAAAGTCGAAAAAAGAG
15607126 ATGACTTGGATTGAGCCAAAGCTAAAA
1 ATGACTTGGATTGAGCCAAAG-TAAAA
15607153 TGATATGACT
Statistics
Matches: 272, Mismatches: 66, Indels: 31
0.74 0.18 0.08
Matches are distributed among these distances:
161 20 0.07
162 10 0.04
163 58 0.21
164 124 0.46
165 45 0.17
166 13 0.05
167 2 0.01
ACGTcount: A:0.44, C:0.11, G:0.20, T:0.25
Consensus pattern (160 bp):
ATGACTTGGATTGAGCCAAAGTAAAAAATGAGATGATTTGACTAAGTTAAGTCAAAAAATGAAAT
GACTTGGATTGAGCCAAAGTCAAAAATGATATGACTTGGACTTAGTCTAAGTAAAAAAATGAGAT
GATCTGATTAAGCCAAAGTCGAAAAAAGAG
Found at i:15607146 original size:28 final size:28
Alignment explanation
Indices: 15607106--15607188 Score: 130
Period size: 31 Copynumber: 2.9 Consensus size: 28
15607096 ATGGCTTTTA
*
15607106 GATTGAGCCAAAGTTAAAAAATGACTTG
1 GATTGAGCCAAAGCTAAAAAATGACTTG
15607134 GATTGAGCCAAAGCTAAAATGATATGACTTG
1 GATTGAGCCAAAGCTAAAA--A-ATGACTTG
15607165 GATTGAGCCAAAGCTAAAAAATGA
1 GATTGAGCCAAAGCTAAAAAATGA
15607189 TATGGCTTGG
Statistics
Matches: 51, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
28 22 0.43
29 1 0.02
30 1 0.02
31 27 0.53
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.23
Consensus pattern (28 bp):
GATTGAGCCAAAGCTAAAAAATGACTTG
Found at i:15608899 original size:7 final size:7
Alignment explanation
Indices: 15608889--15608942 Score: 63
Period size: 7 Copynumber: 7.4 Consensus size: 7
15608879 TTTTATTCTC
*
15608889 ATTTTTC
1 ATTTTTA
15608896 ATTTTTAA
1 ATTTTT-A
*
15608904 ATTTTAA
1 ATTTTTA
15608911 ATTTTTA
1 ATTTTTA
15608918 ATTTTTCA
1 ATTTTT-A
15608926 ATTTTTA
1 ATTTTTA
*
15608933 AATTTTA
1 ATTTTTA
15608940 ATT
1 ATT
15608943 CACACATAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
7 28 0.70
8 12 0.30
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (7 bp):
ATTTTTA
Found at i:15608907 original size:8 final size:8
Alignment explanation
Indices: 15608896--15608938 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
15608886 CTCATTTTTC
15608896 ATTTTTAA
1 ATTTTTAA
15608904 A-TTTTAA
1 ATTTTTAA
15608911 ATTTTT-A
1 ATTTTTAA
*
15608918 ATTTTTCA
1 ATTTTTAA
15608926 ATTTTTAA
1 ATTTTTAA
15608934 ATTTT
1 ATTTT
15608939 AATTCACACA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
7 14 0.44
8 18 0.56
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (8 bp):
ATTTTTAA
Found at i:15608914 original size:15 final size:15
Alignment explanation
Indices: 15608896--15608940 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
15608886 CTCATTTTTC
15608896 ATTTTTAAATTTTAA
1 ATTTTTAAATTTTAA
* *
15608911 ATTTTTAATTTTTCA
1 ATTTTTAAATTTTAA
15608926 ATTTTTAAATTTTAA
1 ATTTTTAAATTTTAA
15608941 TTCACACATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTTTTAAATTTTAA
Found at i:15611674 original size:37 final size:35
Alignment explanation
Indices: 15611622--15611696 Score: 105
Period size: 37 Copynumber: 2.1 Consensus size: 35
15611612 ATTTAAAACT
* *
15611622 AAAAAATCTTTTAATATGTTGGTAAGATTTTATACAA
1 AAAAAATCCTCTAATATGTTGGTAAGA-TTTATA-AA
*
15611659 AAAAAATCCTCTAATATGTTGGTAGGATTTATAAA
1 AAAAAATCCTCTAATATGTTGGTAAGATTTATAAA
15611694 AAA
1 AAA
15611697 TATTTTCTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
35 5 0.14
36 6 0.17
37 24 0.69
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (35 bp):
AAAAAATCCTCTAATATGTTGGTAAGATTTATAAA
Found at i:15611706 original size:34 final size:35
Alignment explanation
Indices: 15611621--15611706 Score: 88
Period size: 37 Copynumber: 2.5 Consensus size: 35
15611611 CATTTAAAAC
*
15611621 TAAAAAAT-CTTT-TAATATGTTGGTAAGATTTTA
1 TAAAAAATATTTTCTAATATGTTGGTAAGATTTTA
* ** *
15611654 TACAAAAAAAATCCTCTAATATGTTGGTAGGA-TTTA
1 T--AAAAAATATTTTCTAATATGTTGGTAAGATTTTA
15611690 TAAAAAATATTTTCTAA
1 TAAAAAATATTTTCTAA
15611707 ACATTTTTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
33 1 0.02
34 13 0.32
35 6 0.15
36 6 0.15
37 15 0.37
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (35 bp):
TAAAAAATATTTTCTAATATGTTGGTAAGATTTTA
Found at i:15611964 original size:18 final size:18
Alignment explanation
Indices: 15611933--15611972 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
15611923 ATTGGTAAGG
15611933 TTTTATTTTCAAAA-TCA
1 TTTTATTTTCAAAATTCA
*
15611950 TTTTATTTTTGAAAATTCA
1 TTTTA-TTTTCAAAATTCA
15611969 TTTT
1 TTTT
15611973 TAAATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 8 0.40
19 7 0.35
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (18 bp):
TTTTATTTTCAAAATTCA
Found at i:15613712 original size:13 final size:13
Alignment explanation
Indices: 15613694--15613722 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
15613684 TAAGGCCTAT
15613694 ATTGTTATATAAA
1 ATTGTTATATAAA
15613707 ATTGTTATATAAA
1 ATTGTTATATAAA
15613720 ATT
1 ATT
15613723 AAGTATTGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (13 bp):
ATTGTTATATAAA
Found at i:15621612 original size:26 final size:26
Alignment explanation
Indices: 15621583--15621652 Score: 70
Period size: 27 Copynumber: 2.7 Consensus size: 26
15621573 GATTCTCCCT
*
15621583 TGAGATTTAATTATTTTGATTTTGA-G
1 TGAGATTTAATTATTTTGATATT-ATG
* * *
15621609 TGAGTTTTAAATATTTTTTATATTATG
1 TGAGATTTAATTA-TTTTGATATTATG
*
15621636 TGAAATTTAATTATTTT
1 TGAGATTTAATTATTTT
15621653 AATAAAATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
26 16 0.46
27 19 0.54
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (26 bp):
TGAGATTTAATTATTTTGATATTATG
Found at i:15622084 original size:17 final size:17
Alignment explanation
Indices: 15622046--15622084 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
15622036 TTTCTTAAAA
* *
15622046 AAAATACATTTATTTTT
1 AAAATACATTTACTTTC
*
15622063 TAAATACATTTACTTTC
1 AAAATACATTTACTTTC
15622080 AAAAT
1 AAAAT
15622085 GTTCTAGAGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (17 bp):
AAAATACATTTACTTTC
Found at i:15628678 original size:21 final size:21
Alignment explanation
Indices: 15628617--15628678 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
15628607 TGTTTTTAAA
*
15628617 ATAAAAATATAGTTTTTGTTC
1 ATAAAAATATAGTTTTTGTTG
*
15628638 A-AAAGAAGAT--TTTATT-TTG
1 ATAAA-AATATAGTTT-TTGTTG
15628657 ATAAAAATATAGTTTTTGTTG
1 ATAAAAATATAGTTTTTGTTG
15628678 A
1 A
15628679 AATATACAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 12
0.68 0.06 0.26
Matches are distributed among these distances:
19 10 0.31
20 10 0.31
21 12 0.38
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (21 bp):
ATAAAAATATAGTTTTTGTTG
Found at i:15631984 original size:21 final size:21
Alignment explanation
Indices: 15631958--15631997 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
15631948 GGTTGTCATC
*
15631958 TCGATTCTTCTTCTTGATCAA
1 TCGATTCTTCCTCTTGATCAA
15631979 TCGATTCTTCCTCTTGATC
1 TCGATTCTTCCTCTTGATC
15631998 TTGCTTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.28, G:0.10, T:0.47
Consensus pattern (21 bp):
TCGATTCTTCCTCTTGATCAA
Found at i:15632938 original size:11 final size:11
Alignment explanation
Indices: 15632922--15632947 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15632912 TGTTTCAATT
15632922 AATTTGGTTGA
1 AATTTGGTTGA
15632933 AATTTGGTTGA
1 AATTTGGTTGA
15632944 AATT
1 AATT
15632948 CATGTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (11 bp):
AATTTGGTTGA
Found at i:15644786 original size:65 final size:65
Alignment explanation
Indices: 15644664--15644787 Score: 146
Period size: 65 Copynumber: 1.9 Consensus size: 65
15644654 GATCAAAGCT
* *
15644664 ATCTTTATTTTATTTACAAGATTCGACCTACATTACTTTCTTGTTCTTTTAATTCTTTTCATACA
1 ATCTTTATTTTATTTACAAGATTCGACCTACATTACTTTCTTGTACTTTCAATTCTTTTCATACA
* * * *
15644729 ATCTTTATTTTCTTTATAAGCATTCGGCCTAC-TCTATTTTCTT-TACTTTGCAA-TCTTTT
1 ATCTTTATTTTATTTACAAG-ATTCGACCTACAT-TACTTTCTTGTACTTT-CAATTCTTTT
15644788 AATTCTTGTT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
65 30 0.60
66 20 0.40
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.53
Consensus pattern (65 bp):
ATCTTTATTTTATTTACAAGATTCGACCTACATTACTTTCTTGTACTTTCAATTCTTTTCATACA
Found at i:15646920 original size:22 final size:22
Alignment explanation
Indices: 15646892--15646936 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
15646882 CTAAATCTTC
*
15646892 TTTAATTCTAGGGATAAAAATA
1 TTTAATTCTAGAGATAAAAATA
*
15646914 TTTAATTCTAGAGATACAAATA
1 TTTAATTCTAGAGATAAAAATA
15646936 T
1 T
15646937 AAATATACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (22 bp):
TTTAATTCTAGAGATAAAAATA
Found at i:15650641 original size:23 final size:25
Alignment explanation
Indices: 15650588--15650644 Score: 82
Period size: 23 Copynumber: 2.4 Consensus size: 25
15650578 AGGGTTCGAT
* *
15650588 AATGAAGGCCTAAACAAGATTCGAC
1 AATGAAGGCCTAAACAAGAGTCAAC
15650613 AATGAAGGCCTAAA-AA-AGTCAAC
1 AATGAAGGCCTAAACAAGAGTCAAC
15650636 AATGAAGGC
1 AATGAAGGC
15650645 TGAAAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 14 0.47
24 2 0.07
25 14 0.47
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (25 bp):
AATGAAGGCCTAAACAAGAGTCAAC
Found at i:15650820 original size:22 final size:22
Alignment explanation
Indices: 15650792--15650835 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
15650782 CTAAATCTTC
*
15650792 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
15650814 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
15650836 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:15655460 original size:51 final size:51
Alignment explanation
Indices: 15655403--15655501 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
15655393 ATAAGGCTTA
* * **
15655403 TAGTTGATTACCTTTCAAACTTGATTTTAGTCAACAATTCAATTATATATG
1 TAGTTGATCACATTTCAAACTTGATTCCAGTCAACAATTCAATTATATATG
** *
15655454 TAGTTGATCACATTTGGAACTTGATTCCATTCAACAATTCAATTATAT
1 TAGTTGATCACATTTCAAACTTGATTCCAGTCAACAATTCAATTATAT
15655502 GATTCTCATG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.41
Consensus pattern (51 bp):
TAGTTGATCACATTTCAAACTTGATTCCAGTCAACAATTCAATTATATATG
Found at i:15656029 original size:20 final size:20
Alignment explanation
Indices: 15656004--15656043 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
15655994 GAATATATGA
15656004 GATACCTCAGAGAGGTTTTT
1 GATACCTCAGAGAGGTTTTT
15656024 GATACCTCAGAGAGGTTTTT
1 GATACCTCAGAGAGGTTTTT
15656044 AAAGTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (20 bp):
GATACCTCAGAGAGGTTTTT
Found at i:15658213 original size:290 final size:290
Alignment explanation
Indices: 15657693--15658274 Score: 1083
Period size: 290 Copynumber: 2.0 Consensus size: 290
15657683 TGTCGTTTAT
15657693 GAAAAGGTCGTAAACCAAGGGAGAAAACAAGTCCAATTTAGTCTAAGTATCTTAGTTTAGATTCA
1 GAAAAGGTCGTAAACCAAGGGAGAAAACAAGTCCAATTTAGTCTAAGTATCTTAGTTTAGATTCA
15657758 TTTATGTAAGAAGAGGTTTTCAAACAAAAGAAAATCAAAACTCATGCTTAAAATCGAAAGTCCTT
66 TTTATGTAAGAAGAGGTTTTCAAACAAAAGAAAATCAAAACTCATGCTTAAAATCGAAAGTCCTT
*
15657823 TTAAAATGATTACCAAGGTATATGATAATGTATACAAGATTGATTTGCCAAGCAAGTATAATGTT
131 TTAAAATGATTACCAAGGTATATGATAATGCATACAAGATTGATTTGCCAAGCAAGTATAATGTT
* *
15657888 TTTACCACTTTTAATGTGAGGGACTTGCCACCATATTTGAAAGATAATGAGGACTTTGACTTAAG
196 TCTACCACTTTTAATGTGAGAGACTTGCCACCATATTTGAAAGATAATGAGGACTTTGACTTAAG
15657953 GACAAATCATCAGTCGAGAAAAAAGAATGA
261 GACAAATCATCAGTCGAGAAAAAAGAATGA
*
15657983 GAAAAGGTCGTCAACCAAGGGAGAAAACAAGTCCAATTTAGTCTAAGTATCTTAGTTTAGATTCA
1 GAAAAGGTCGTAAACCAAGGGAGAAAACAAGTCCAATTTAGTCTAAGTATCTTAGTTTAGATTCA
* *
15658048 TTTATGTAAGAAGATGTTTTCAAACAAAAGAAAATCAAAGCTCATGCTTAAAATCGAAAGTCCTT
66 TTTATGTAAGAAGAGGTTTTCAAACAAAAGAAAATCAAAACTCATGCTTAAAATCGAAAGTCCTT
15658113 TTAAAATGATTACCAAGGTATATGATAATGCATACAAGATTGATTTGCCAAGCAAGTATAATGTT
131 TTAAAATGATTACCAAGGTATATGATAATGCATACAAGATTGATTTGCCAAGCAAGTATAATGTT
* *
15658178 TCTGCTACTTTTAATGTGAGAGACTTGCCACCATATTTGAAAGATAATGAGGACTTTGACTTAAG
196 TCTACCACTTTTAATGTGAGAGACTTGCCACCATATTTGAAAGATAATGAGGACTTTGACTTAAG
*
15658243 GACAAATCATCAGTCGAGAAAAAATAATGA
261 GACAAATCATCAGTCGAGAAAAAAGAATGA
15658273 GA
1 GA
15658275 CCCATGATGA
Statistics
Matches: 283, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
290 283 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (290 bp):
GAAAAGGTCGTAAACCAAGGGAGAAAACAAGTCCAATTTAGTCTAAGTATCTTAGTTTAGATTCA
TTTATGTAAGAAGAGGTTTTCAAACAAAAGAAAATCAAAACTCATGCTTAAAATCGAAAGTCCTT
TTAAAATGATTACCAAGGTATATGATAATGCATACAAGATTGATTTGCCAAGCAAGTATAATGTT
TCTACCACTTTTAATGTGAGAGACTTGCCACCATATTTGAAAGATAATGAGGACTTTGACTTAAG
GACAAATCATCAGTCGAGAAAAAAGAATGA
Found at i:15659480 original size:21 final size:20
Alignment explanation
Indices: 15659437--15659480 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
15659427 ATTTCATCAA
*
15659437 TTGAGTTCATGTCATTTGCC
1 TTGAGTTCATGTCATTTGAC
**
15659457 TTGAGTTTGTGTCACTTTGAC
1 TTGAGTTCATGTCA-TTTGAC
15659478 TTG
1 TTG
15659481 TGACACAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.14, C:0.16, G:0.23, T:0.48
Consensus pattern (20 bp):
TTGAGTTCATGTCATTTGAC
Found at i:15661634 original size:20 final size:22
Alignment explanation
Indices: 15661591--15661634 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 22
15661581 GAATAATTAT
**
15661591 TTTTAATATATTTATTTTTTAA
1 TTTTAATATATTTATTTTAGAA
15661613 TTTTAAT-T-TTTATTTTAGAA
1 TTTTAATATATTTATTTTAGAA
15661633 TT
1 TT
15661635 ATCACTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 12 0.60
21 1 0.05
22 7 0.35
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (22 bp):
TTTTAATATATTTATTTTAGAA
Found at i:15661877 original size:30 final size:30
Alignment explanation
Indices: 15661841--15661908 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
15661831 ATTTTTATTA
15661841 CATTCAAAC-AATTGCTTAATCTTTAATTTG
1 CATTCAAACAAATT-CTTAATCTTTAATTTG
15661871 CATTCAAACAAATTCTTAATCTTTAATTTG
1 CATTCAAACAAATTCTTAATCTTTAATTTG
*
15661901 TATTCAAA
1 CATTCAAA
15661909 TAAGATCTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
30 32 0.89
31 4 0.11
ACGTcount: A:0.37, C:0.16, G:0.04, T:0.43
Consensus pattern (30 bp):
CATTCAAACAAATTCTTAATCTTTAATTTG
Found at i:15666631 original size:24 final size:24
Alignment explanation
Indices: 15666588--15666633 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
15666578 TTTTTGAAAT
**
15666588 AGAAAAAGGGTTTTTTTTTTTTTG
1 AGAAAAAGGGTTTTAATTTTTTTG
*
15666612 AGAAAATGGGTTTTAATTTTTT
1 AGAAAAAGGGTTTTAATTTTTT
15666634 AGCCAAGGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.20, T:0.52
Consensus pattern (24 bp):
AGAAAAAGGGTTTTAATTTTTTTG
Found at i:15667645 original size:30 final size:30
Alignment explanation
Indices: 15667578--15667645 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
15667568 ATTTTTATTA
15667578 CATTCAAACAAACTCTTAAGCTTTAATTTG
1 CATTCAAACAAACTCTTAAGCTTTAATTTG
* * **
15667608 CACTCAAACAAATTCTTAATTTTTAATTTG
1 CATTCAAACAAACTCTTAAGCTTTAATTTG
*
15667638 TATTCAAA
1 CATTCAAA
15667646 TAAGACCTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (30 bp):
CATTCAAACAAACTCTTAAGCTTTAATTTG
Found at i:15673614 original size:16 final size:17
Alignment explanation
Indices: 15673589--15673620 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15673579 CAACTTTTCC
15673589 TTTTCTTTTTCTCTTTT
1 TTTTCTTTTTCTCTTTT
15673606 TTTTC-TTTTCTCTTT
1 TTTTCTTTTTCTCTTT
15673621 GCTTTTCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTCTTTTTCTCTTTT
Found at i:15673626 original size:17 final size:17
Alignment explanation
Indices: 15673588--15673627 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
15673578 ACAACTTTTC
15673588 CTTTTCTTTTTCTCTTT
1 CTTTTCTTTTTCTCTTT
*
15673605 TTTTTC-TTTTCTCTTT
1 CTTTTCTTTTTCTCTTT
15673621 GCTTTTC
1 -CTTTTC
15673628 CTTCTTACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.75
Consensus pattern (17 bp):
CTTTTCTTTTTCTCTTT
Found at i:15678103 original size:19 final size:19
Alignment explanation
Indices: 15678076--15678115 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
15678066 CATTTTTAGA
15678076 TGCTACATCAAGAGGTGTT
1 TGCTACATCAAGAGGTGTT
* * *
15678095 TGCTGCATCAGGAGTTGTT
1 TGCTACATCAAGAGGTGTT
15678114 TG
1 TG
15678116 ATGAGTAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.20, C:0.15, G:0.30, T:0.35
Consensus pattern (19 bp):
TGCTACATCAAGAGGTGTT
Found at i:15681385 original size:27 final size:27
Alignment explanation
Indices: 15681335--15681386 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
15681325 TATTTCAAAA
*
15681335 ATACAAATGCAATGATCAATGCAATTG
1 ATACAAATGCAATAATCAATGCAATTG
*
15681362 ATACAAGTGCAATAATCCAA-GCAAT
1 ATACAAATGCAATAAT-CAATGCAAT
15681387 AATTCAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.86
28 3 0.14
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.23
Consensus pattern (27 bp):
ATACAAATGCAATAATCAATGCAATTG
Found at i:15681436 original size:46 final size:46
Alignment explanation
Indices: 15681360--15681555 Score: 216
Period size: 46 Copynumber: 4.3 Consensus size: 46
15681350 TCAATGCAAT
* * * * *
15681360 TGATACAAGTGCAATAATCCAAGCAATAATTCAAAAGTTCACTAAA
1 TGATGCAAATGCAAAAATCCAAACAATAATTCAAAAGCTCACTAAA
*
15681406 TGATGCAAATGCAAAAAACCAAACAATAATTCAAAAGCTCACTAAA
1 TGATGCAAATGCAAAAATCCAAACAATAATTCAAAAGCTCACTAAA
* *** ** * * * *
15681452 TGATGCAAATAC-ATGGTCCAAATGATGATTTAAATGGTCACTAAA
1 TGATGCAAATGCAAAAATCCAAACAATAATTCAAAAGCTCACTAAA
15681497 TGATGCAAA-GCAAATAATCCAAACAATAATTCAAAAGCTCACTAAA
1 TGATGCAAATGCAAA-AATCCAAACAATAATTCAAAAGCTCACTAAA
*
15681543 AGATGCAAATGCA
1 TGATGCAAATGCA
15681556 TGGTCCAAAA
Statistics
Matches: 119, Mismatches: 28, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
44 1 0.01
45 33 0.28
46 82 0.69
47 3 0.03
ACGTcount: A:0.48, C:0.17, G:0.12, T:0.22
Consensus pattern (46 bp):
TGATGCAAATGCAAAAATCCAAACAATAATTCAAAAGCTCACTAAA
Found at i:15681501 original size:91 final size:91
Alignment explanation
Indices: 15681398--15681564 Score: 291
Period size: 91 Copynumber: 1.8 Consensus size: 91
15681388 ATTCAAAAGT
*
15681398 TCACTAAATGATGCAAATGCAAA-AAACCAAACAATAATTCAAAAGCTCACTAAATGATGCAAAT
1 TCACTAAATGATGCAAA-GCAAATAAACCAAACAATAATTCAAAAGCTCACTAAAAGATGCAAAT
15681462 ACATGGTCCAAATGATGATTTAAATGG
65 ACATGGTCCAAATGATGATTTAAATGG
* *
15681489 TCACTAAATGATGCAAAGCAAATAATCCAAACAATAATTCAAAAGCTCACTAAAAGATGCAAATG
1 TCACTAAATGATGCAAAGCAAATAAACCAAACAATAATTCAAAAGCTCACTAAAAGATGCAAATA
15681554 CATGGTCCAAA
66 CATGGTCCAAA
15681565 AGATTATGCA
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
90 5 0.07
91 67 0.93
ACGTcount: A:0.48, C:0.18, G:0.13, T:0.22
Consensus pattern (91 bp):
TCACTAAATGATGCAAAGCAAATAAACCAAACAATAATTCAAAAGCTCACTAAAAGATGCAAATA
CATGGTCCAAATGATGATTTAAATGG
Found at i:15684467 original size:134 final size:135
Alignment explanation
Indices: 15684046--15684486 Score: 399
Period size: 134 Copynumber: 3.2 Consensus size: 135
15684036 AATTTATATG
* * * * * *
15684046 TAAGAATTCATATTCAAAAGTATATACAAAAATGAAGAGTG-CAAAGATTGCCTCCAACAAATAA
1 TAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAG-GACAAAAATTG-C-CCAA-AAA-AA
* * * ** * *
15684110 AATAATGTACATACAAAAATGTCTAGGTGGATAAAAAATTATGTG--AATACATGCATGCAATAT
61 AA-AATCTACATACAAAAATATTTATATGGATAAAAAATTATATGCAAATACATGTATGCAATAT
15684173 ATAATGAAAAA
125 ATAATGAAAAA
* * * *
15684184 TAAGAATTCATAATCAAAACTATGTACAAAACTAAAAAGGACAAAAATTGCCCCAAATAAATAAT
1 TAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAGGACAAAAATTGCCCAAAAAAAAAAAT
* ** * * * * *
15684249 GTACATACAAAAATATTTATATAAATAAAAATTATATATACAAATACATGTATCCAATACATTAT
66 CTACATACAAAAATATTTATATGGATAAAAAAT-TATATGCAAATACATGTATGCAATATATAAT
*
15684314 GAGAAA
130 GAAAAA
* * * ** * **
15684320 CAAGAATTCATATTCAAAATTATGTACAAAATTTCAAAGG-CAAAGATTG-TTAAAAAAAAAAAT
1 TAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAGGACAAAAATTGCCCAAAAAAAAAAAT
* * * *
15684383 CTATATATGAAAAA-GTTTATATGGATAAAAAATGTATATGCAAATATATGTATGCAATATATAA
66 CTACATA-CAAAAATATTTATATGGATAAAAAAT-TATATGCAAATACATGTATGCAATATATAA
15684447 TGAAAAA
129 TGAAAAA
* *
15684454 TAAAAATTAATATTCAAAACTATGTACAAAACT
1 TAAGAATTCATATTCAAAACTATGTACAAAACT
15684487 GAAGAGGGCG
Statistics
Matches: 243, Mismatches: 55, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
133 29 0.12
134 95 0.39
135 15 0.06
136 61 0.25
137 2 0.01
138 41 0.17
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.27
Consensus pattern (135 bp):
TAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAGGACAAAAATTGCCCAAAAAAAAAAAT
CTACATACAAAAATATTTATATGGATAAAAAATTATATGCAAATACATGTATGCAATATATAATG
AAAAA
Found at i:15691437 original size:61 final size:61
Alignment explanation
Indices: 15691342--15691465 Score: 248
Period size: 61 Copynumber: 2.0 Consensus size: 61
15691332 GATGCAAAGA
15691342 ACAATGTGGTAAGAGTAACAATAAAATGGTACCTTATTGCATGTCCACGAATATATTTCAC
1 ACAATGTGGTAAGAGTAACAATAAAATGGTACCTTATTGCATGTCCACGAATATATTTCAC
15691403 ACAATGTGGTAAGAGTAACAATAAAATGGTACCTTATTGCATGTCCACGAATATATTTCAC
1 ACAATGTGGTAAGAGTAACAATAAAATGGTACCTTATTGCATGTCCACGAATATATTTCAC
15691464 AC
1 AC
15691466 CATATGTGTT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (61 bp):
ACAATGTGGTAAGAGTAACAATAAAATGGTACCTTATTGCATGTCCACGAATATATTTCAC
Found at i:15692914 original size:39 final size:36
Alignment explanation
Indices: 15692866--15692942 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
15692856 CCATTGTCTT
* *
15692866 AACTTCTTTTCAAGTCCATTCATTTATACATCTACTTGC
1 AACTTCTTTTCAA-T-CACT-ATTTATACATCCACTTGC
*
15692905 AACTTCTTTTCAATTACTATTTATACATCCACTTGC
1 AACTTCTTTTCAATCACTATTTATACATCCACTTGC
15692941 AA
1 AA
15692943 TGAATTTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 19 0.54
37 2 0.06
38 1 0.03
39 13 0.37
ACGTcount: A:0.29, C:0.25, G:0.04, T:0.43
Consensus pattern (36 bp):
AACTTCTTTTCAATCACTATTTATACATCCACTTGC
Found at i:15712200 original size:279 final size:279
Alignment explanation
Indices: 15711700--15712223 Score: 861
Period size: 279 Copynumber: 1.9 Consensus size: 279
15711690 GAAACCAGTT
* * *
15711700 GAAGGAATAGTTTCCAGTGACAGCCAGAAAGATGTTTAAGGCTGAGATACTCCATATTGCTCAAC
1 GAAGGAATAGTTTCAAGTGACAGCCAGAAAGATGTTTAAGGCTGAGATACCCCATATTGCTCAAA
* * *
15711765 AAGATTCTTTTGTTCGTATCATGCCATCATCTCATTATCCCGTATTGTTCATGGTTACAATAGAT
66 AAGATTCTTTTGTTCATATCATGCCATCATCTCATTATCCCATACTGTTCATGGTTACAATAGAT
* *
15711830 GTTTTGGAACTCTTTAAATTTATTCTCTTCAATGGAAGTGGGATTGATATTAAAACTAGCCTATA
131 GTTTTGAAACTCTTTAAATTTATCCTCTTCAATGGAAGTGGGATTGATATTAAAACTAGCCTATA
* *
15711895 CAAGCATTTATCAGGAAAGTAGGCACTAGAGTATTTCCTAAAGGAAATTAGACTAGTTACTTAGC
196 CAAACATTTATCAGCAAAGTAGGCACTAGAGTATTTCCTAAAGGAAATTAGACTAGTTACTTAGC
15711960 CAAAAACAAGTAGCTAGTG
261 CAAAAACAAGTAGCTAGTG
* *
15711979 GAAGGAATAGTTTCAAGTGATAGCCAGAAAGATGTTTAATGCTGAGATACCCCATATTGCTCAAA
1 GAAGGAATAGTTTCAAGTGACAGCCAGAAAGATGTTTAAGGCTGAGATACCCCATATTGCTCAAA
* **
15712044 AAGATTCTTTTGTTCATATCATGCCATCATCTCATTATCCCATACTGTTCATGGTTCCCTTAGAT
66 AAGATTCTTTTGTTCATATCATGCCATCATCTCATTATCCCATACTGTTCATGGTTACAATAGAT
* * *
15712109 GTTTTGAAACTTTTTAAATTTGTCCTCTTCAATGGAAGTGTGG-TTGATATTAAAACTAGCTTAT
131 GTTTTGAAACTCTTTAAATTTATCCTCTTCAATGGAAGTG-GGATTGATATTAAAACTAGCCTAT
*
15712173 ACAAACATTTATCAGCAAAGTAGGCACTAGAGTATTTCCTCAAGGAAATTA
195 ACAAACATTTATCAGCAAAGTAGGCACTAGAGTATTTCCTAAAGGAAATTA
15712224 ATTTACTTAT
Statistics
Matches: 225, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
279 223 0.99
280 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (279 bp):
GAAGGAATAGTTTCAAGTGACAGCCAGAAAGATGTTTAAGGCTGAGATACCCCATATTGCTCAAA
AAGATTCTTTTGTTCATATCATGCCATCATCTCATTATCCCATACTGTTCATGGTTACAATAGAT
GTTTTGAAACTCTTTAAATTTATCCTCTTCAATGGAAGTGGGATTGATATTAAAACTAGCCTATA
CAAACATTTATCAGCAAAGTAGGCACTAGAGTATTTCCTAAAGGAAATTAGACTAGTTACTTAGC
CAAAAACAAGTAGCTAGTG
Found at i:15723353 original size:20 final size:21
Alignment explanation
Indices: 15723328--15723378 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
15723318 CTCTTGATCC
* *
15723328 ATTTTAGCAC-TTTTTCTTCA
1 ATTTTAGCACGCTTCTCTTCA
15723348 ATTTTAGCACGCTTCTCTTCA
1 ATTTTAGCACGCTTCTCTTCA
15723369 ATTTTAGCAC
1 ATTTTAGCAC
15723379 ACTTTTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 10 0.36
21 18 0.64
ACGTcount: A:0.22, C:0.24, G:0.08, T:0.47
Consensus pattern (21 bp):
ATTTTAGCACGCTTCTCTTCA
Found at i:15724389 original size:142 final size:142
Alignment explanation
Indices: 15724129--15724418 Score: 384
Period size: 142 Copynumber: 2.0 Consensus size: 142
15724119 TCATTCGAAT
* * * * *
15724129 AAGTTTAATATCATGTTTTGAAGTTATTCAAACTGTTAAAAGAGAACAATAACAGTAAATTTGTA
1 AAGTTCAATATCATGTATTGAAGCTATCCAAACTGTTAAAAGAGAACAATAACAATAAATTTGTA
* * *
15724194 ATTTTTCCTTTTAATAGCAAAAAAATCTTAAATAGATGTAAACAATAACTTTTTCACACATATCA
66 ATTTTTCCTTTTAATAGCAAAAAAATCTTAAACAAATGTAAACAATAACTTTTTCAAACATATCA
*
15724259 ACTGTGAAAACA
131 ACTGTAAAAACA
* * * *
15724271 AAGTTCAATATCATGTATTGAAGCTATCCAAATTGTTAAAATAGAATAATAACAATAAATTTG-C
1 AAGTTCAATATCATGTATTGAAGCTATCCAAACTGTTAAAAGAGAACAATAACAATAAATTTGTA
* ** * *
15724335 ATTTTTGCCTTTTAATGGCACAAAAAATCTTAAACAAATGTAAACGGTAATTTTTTCAAATATAT
66 ATTTTT-CCTTTTAATAGCA-AAAAAATCTTAAACAAATGTAAACAATAACTTTTTCAAACATAT
*
15724400 CAACTGTAAAAACC
129 CAACTGTAAAAACA
15724414 AAGTT
1 AAGTT
15724419 AATCATTTGA
Statistics
Matches: 127, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
141 6 0.05
142 67 0.53
143 54 0.43
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.34
Consensus pattern (142 bp):
AAGTTCAATATCATGTATTGAAGCTATCCAAACTGTTAAAAGAGAACAATAACAATAAATTTGTA
ATTTTTCCTTTTAATAGCAAAAAAATCTTAAACAAATGTAAACAATAACTTTTTCAAACATATCA
ACTGTAAAAACA
Found at i:15724568 original size:156 final size:158
Alignment explanation
Indices: 15724266--15725654 Score: 489
Period size: 156 Copynumber: 8.8 Consensus size: 158
15724256 TCAACTGTGA
* * * * *
15724266 AAACAAAGTTCAATATCATGTATTGAAGCTATCCAAATTGTTAAAATAGAATAATAACAATAAAT
1 AAAC-AAGTTTAATATCATGTATTGAAACTATCCAAACTATTAAAATAGAATAATAACAACAAAT
* * *
15724331 TTGCATTTTTGCCTTTTAATGGCACAAAAAATCTTAAACAAATGTAAACGGTAATTTTTTCAAAT
65 TTG---TTTTGCCTTTTAACGGCACAAAAAATCTTAAACAAACGTAAACGGTAATTTTTTCAAAC
* *
15724396 ATATCAACTGTAAAAACCAAGTT-AATCATTTG
127 ATATCAACTGTAAAAACCAAATTCAATCA-TTC
* * *
15724428 AAA-AAGTTTGATATCATATATTGAAACTATCCAAACTATTAAAATAGAATAATAACAGCAAATT
1 AAACAAGTTTAATATCATGTATTGAAACTATCCAAACTATTAAAATAGAATAATAACAACAAATT
* * * *
15724492 TG-TTTGCCTTTTAACGGCACAAAAAGT-TCTAAACAGACGTAAACGGTAGTTTTTTCACACATA
66 TGTTTTGCCTTTTAACGGCACAAAAAATCT-TAAACAAACGTAAACGGTAATTTTTTCAAACATA
*
15724555 TCAA-TCGTGAAAACCAAATTCAATCATTC
130 TCAACT-GTAAAAACCAAATTCAATCATTC
*** * * * * * * *
15724584 AAACAAGTTTAATATCATGTATTGAGGTTAT-CAAAGCTTTTAAAACATAACAATAATAGCAATT
1 AAACAAGTTTAATATCATGTATTGAAACTATCCAAA-CTATTAAAATAGAATAATAACAACAAAT
* * ** * * * * * ** * * *
15724648 TTACATTTTTTCCTTTTAACGATATAAAAAGTCCTAAATAGATATAAATGATAATTTTTTCACAC
65 TT---GTTTTGCCTTTTAACGGCACAAAAAATCTTAAACAAACGTAAACGGTAATTTTTTCAAAC
* ** *
15724713 ATATCAAC---CATGA--AAA-TCAA--GTTC
127 ATATCAACTGTAAAAACCAAATTCAATCATTC
* * * * * *
15724737 -AAC--------TA-CATGTATTGAAGCTATCCAAACTGTTAAAACAAAAAAATAACAGCAAATT
1 AAACAAGTTTAATATCATGTATTGAAACTATCCAAACTATTAAAATAGAATAATAACAACAAATT
** * * * * * * * *
15724792 TGCATTTTTACTTTCTAACGGCACCAAAAGTCCTAAACAAATGTAAAAGTTAA-CTTTTCACACA
66 TG--TTTTGCCTTT-TAACGGCACAAAAAATCTTAAACAAACGTAAACGGTAATTTTTTCAAACA
** * * * * *
15724856 TATCAACCATGAAAATCAAGTTCAATAATTT
128 TATCAACTGTAAAAACCAAATTCAATCATTC
* * * ** * * * * **
15724887 GAACAAGTTTAATATTATTTATTGAAGTTATCCAAACTGA-TAAAAGAGAACAATTATAGTAAAT
1 AAACAAGTTTAATATCATGTATTGAAACTATCCAAACT-ATTAAAATAGAATAATAACAACAAAT
* * * * * * * * * *
15724951 TTACATTTTTACCTTTTAACGACAAAAAAAATCATAAATAGATGTAAACCGTAA-CTTTTCAACA
65 TT---GTTTTGCCTTTTAACGGCACAAAAAATCTTAAACAAACGTAAACGGTAATTTTTTCAA-A
* *
15725015 CATATCAATCATG--AAAACCAAGTTCAA-CA--G
126 CATATCAA-C-TGTAAAAACCAAATTCAATCATTC
* * * * *
15725045 ATA-AA-TTTAATATCATGTATTAAAACTATCCAAACTGTTAAAATAGAACAATAACAACTAATT
1 AAACAAGTTTAATATCATGTATTGAAACTATCCAAACTATTAAAATAGAATAATAACAACAAATT
* * ** * * * * * * * * * *
15725108 TGTATTTTTAG-CTTTTAATGACATTAAAAGTCCTAAATAGACATAAATGGCAACTGTTTCACAC
66 TG---TTTT-GCCTTTTAACGGCACAAAAAATCTTAAACAAACGTAAACGGTAATTTTTTCAAAC
* * * *
15725172 ATATTAATCATG--AAAACTAAGTTCAATCATTT
127 ATATCAA-C-TGTAAAAACCAAATTCAATCATTC
* * * * * * * * *
15725204 AGACAAGTTTAATATCATATATTAAAACTATACAAATTGTT-AAATGGAATAATAATAGCAAATT
1 AAACAAGTTTAATATCATGTATTGAAACTATCCAAACTATTAAAATAGAATAATAACAACAAA-T
* ** * * * * *
15725268 TTCATTTTTGCCTTTTAAC-AAAAAAAAAATCATAAACAAACATAAACGGTAACTTTTTCACACA
65 TT--GTTTTGCCTTTTAACGGCACAAAAAATCTTAAACAAACGTAAACGGTAATTTTTTCAAACA
* * * * *
15725332 TATCAA-TCGTGAAAATCAAGTTCAATTATTT
128 TATCAACT-GTAAAAACCAAATTCAATCATTC
** * * * * *
15725363 GGACAAGTTTAATATCATATATT-AAAGCTAT--AAACTACTAAAATATAACAATAATAGTA-AA
1 AAACAAGTTTAATATCATGTATTGAAA-CTATCCAAACTATTAAAATAGAATAATAACA--ACAA
* * ** * * * ** * *
15725424 ATTGTATTTTTGCCTTTTAACGAG-ACAAAAAGTCCAAAATAGAC-AAAATAGTAACTTTTTCAC
63 ATT-T-GTTTTGCCTTTTAACG-GCACAAAAAATCTTAAACAAACGTAAACGGTAATTTTTTCAA
* * * * *
15725487 ATATATCAATTATGAAAACCAAATTTAATCATTC
125 ACATATCAACTGTAAAAACCAAATTCAATCATTC
* ** * * * **
15725521 AGACAAGTTTAATATCATGTATTGAAGTTATCAAAACTGTTAAAATA-AAAAATAATTACAAATT
1 AAACAAGTTTAATATCATGTATTGAAACTATCCAAACTATTAAAATAGAATAATAACAACAAATT
* ** * * ** * *
15725585 TGTATTTTTGACTTTTAACAACACAAAAAGTCTTAAACAAACATAAATTGTAA-CTTTTCATACA
66 TG---TTTTGCCTTTTAACGGCACAAAAAATCTTAAACAAACGTAAACGGTAATTTTTTCAAACA
15725649 TATCAA
128 TATCAA
15725655 TAATCTTTCC
Statistics
Matches: 950, Mismatches: 202, Indels: 153
0.73 0.15 0.12
Matches are distributed among these distances:
142 26 0.03
143 68 0.07
144 6 0.01
145 2 0.00
147 2 0.00
148 4 0.00
150 2 0.00
151 3 0.00
152 3 0.00
153 3 0.00
155 6 0.01
156 189 0.20
157 68 0.07
158 107 0.11
159 160 0.17
160 180 0.19
161 117 0.12
162 4 0.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.32
Consensus pattern (158 bp):
AAACAAGTTTAATATCATGTATTGAAACTATCCAAACTATTAAAATAGAATAATAACAACAAATT
TGTTTTGCCTTTTAACGGCACAAAAAATCTTAAACAAACGTAAACGGTAATTTTTTCAAACATAT
CAACTGTAAAAACCAAATTCAATCATTC
Found at i:15724991 original size:303 final size:298
Alignment explanation
Indices: 15724438--15725356 Score: 896
Period size: 303 Copynumber: 3.0 Consensus size: 298
15724428 AAAAAGTTTG
* * * **
15724438 ATATCATATATTGAAACTATCCAAACTATTAAAATAGAATAATAACAGCAAATTTG--TTTGCCT
1 ATATCATGTATTGAAACTATCCAAACTGTTAAAATAGAAAAATAACAGCAAATTTGATTTTTACT
* * ** *
15724501 TTTAACGGCACAAAAAGTTCTAAACAGACGTAAACGGTAGTTTTTTCACACATATCAATCGTGAA
66 TTTAACGGCACAAAAAGTCCTAAACAGACGTAAAAGGTA-ACTTTTCACACATATCAATCATGAA
* * * * * *
15724566 AACCAAATTCAATCATTCAAACAAGTTTAATATCATGTATTGAGGTTATCAAAGCTTTTAAAACA
130 AA-CAAGTTCAATCATT-TAACAAGTTTAATATCATATATTGAAGTTATCAAA-CTGTTAAAAGA
* * * * * * *
15724631 TAACAATAATAGCAATTTTACATTTTTTCCTTTTAACGATATAAAAAGTCCTAAATAGATATAAA
192 GAACAATAATAGCAAATTTACATTTTTACCTTTTAACGAAAAAAAAAATCATAAATAGATATAAA
* *
15724696 TGATAATTTTTTCACACATATCAACCATGAAAATCAAGTTCAAC
257 CG-TAA-TTTTTCACACATATCAATCATGAAAATCAAGTTCAAC
* * *
15724740 -TA-CATGTATTGAAGCTATCCAAACTGTTAAAACAAAAAAATAACAGCAAATTTGCATTTTTAC
1 ATATCATGTATTGAAACTATCCAAACTGTTAAAATAGAAAAATAACAGCAAATTTG-ATTTTTAC
* * * * *
15724803 TTTCTAACGGCACCAAAAGTCCTAAACAAATGTAAAAGTTAACTTTTCACACATATCAACCATGA
65 TTT-TAACGGCACAAAAAGTCCTAAACAGACGTAAAAGGTAACTTTTCACACATATCAATCATGA
* * * *
15724868 AAATCAAGTTCAATAATTTGAACAAGTTTAATATTATTTATTGAAGTTATCCAAACTGATAAAAG
129 AAA-CAAGTTCAATCATTT-AACAAGTTTAATATCATATATTGAAGTTAT-CAAACTGTTAAAAG
* * * *
15724933 AGAACAATTATAGTAAATTTACATTTTTACCTTTTAACGACAAAAAAAATCATAAATAGATGTAA
191 AGAACAATAATAGCAAATTTACATTTTTACCTTTTAACGAAAAAAAAAATCATAAATAGATATAA
* *
15724998 ACCGTAACTTTTCAACACATATCAATCATGAAAACCAAGTTCAAC
256 A-CGTAATTTTTC-ACACATATCAATCATGAAAATCAAGTTCAAC
* * * *
15725043 AGATAAATTTAATATCATGTATTAAAACTATCCAAACTGTTAAAATAGAACAATAACAACTAATT
1 -----------ATATCATGTATTGAAACTATCCAAACTGTTAAAATAGAAAAATAACAGCAAATT
* * ** * * * *
15725108 TGTATTTTTAGCTTTTAATGACATTAAAAGTCCTAAATAGACATAAATGGCAACTGTTTCACACA
55 TG-ATTTTTA-CTTTTAACGGCACAAAAAGTCCTAAACAGACGTAAAAGGTAACT-TTTCACACA
* * **
15725173 TATTAATCATGAAAACTAAGTTCAATCATTTAGACAAGTTTAATATCATATATTAAAACTATACA
117 TATCAATCATGAAAAC-AAGTTCAATCATTTA-ACAAGTTTAATATCATATATTGAAGTTAT-CA
* * * * *
15725238 AATTGTTAAATG-GAATAATAATAGCAAATTTTCATTTTTGCCTTTTAAC-AAAAAAAAAATCAT
179 AACTGTTAAAAGAGAACAATAATAGCAAATTTACATTTTTACCTTTTAACGAAAAAAAAAATCAT
* * * *
15725301 AAACAAACATAAACGGTAACTTTTTCACACATATCAATCGTGAAAATCAAGTTCAA
244 AAATAGATATAAAC-GTAA-TTTTTCACACATATCAATCATGAAAATCAAGTTCAA
15725357 TTATTTGGAC
Statistics
Matches: 504, Mismatches: 86, Indels: 41
0.80 0.14 0.06
Matches are distributed among these distances:
300 46 0.09
301 2 0.00
302 5 0.01
303 164 0.33
304 36 0.07
314 1 0.00
315 56 0.11
316 120 0.24
317 74 0.15
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (298 bp):
ATATCATGTATTGAAACTATCCAAACTGTTAAAATAGAAAAATAACAGCAAATTTGATTTTTACT
TTTAACGGCACAAAAAGTCCTAAACAGACGTAAAAGGTAACTTTTCACACATATCAATCATGAAA
ACAAGTTCAATCATTTAACAAGTTTAATATCATATATTGAAGTTATCAAACTGTTAAAAGAGAAC
AATAATAGCAAATTTACATTTTTACCTTTTAACGAAAAAAAAAATCATAAATAGATATAAACGTA
ATTTTTCACACATATCAATCATGAAAATCAAGTTCAAC
Found at i:15725487 original size:317 final size:312
Alignment explanation
Indices: 15724842--15725655 Score: 838
Period size: 317 Copynumber: 2.6 Consensus size: 312
15724832 ATGTAAAAGT
* * *
15724842 TAAC-TTTTCACACATATCAACCATGAAAA-TCAAGTTCAATAATTT-GAACAAGTTTAATATTA
1 TAACTTTTTCACACATATCAATCATGAAAACT-AAGTTCAATCATTTAG-ACAAGTTTAATATCA
* * * * * * * *
15724904 TTTATTGAAGTTATCCAAACTGATAAAAGAGAACAATTATAGTAAATTTACATTTTTACCTTTTA
64 TATATTGAAGTTAT-CAAACTGTTAAATG-GAAAAATAATAGCAAATTTTCATTTTTGCCTTTTA
* * * **
15724969 ACGACAAAAAAAATCATAAATAGATGTAAACCGTAACTTTTCAACACATATCAATCATGAAAACC
127 AC-AAAAAAAAAATCATAAACAAACATAAACCGTAACTTTTC-ACACATATCAATCATGAAAACC
* * **
15725034 AAGTTCAACAGATAAATTTAATATCATGTATTAAAACTATCCAAACTGTTAAAATAGAACAATAA
190 AAGTTCAACAGACAAATTTAATATCATATATTAAAACTAT-CAAACTACTAAAATAGAACAATAA
* * ** * *
15725099 CAACTAATTTGTATTTTTAGCTTTTAATGACATTAAAAGTCCTAAATAGACATAAATGG
254 CAACTAAATTGTATTTTTAGCTTTTAACGACACAAAAAGTCCAAAATAGACATAAATAG
* * *
15725158 CAACTGTTTCACACATATTAATCATGAAAACTAAGTTCAATCATTTAGACAAGTTTAATATCATA
1 TAACTTTTTCACACATATCAATCATGAAAACTAAGTTCAATCATTTAGACAAGTTTAATATCATA
* ** * *
15725223 TATTAAAACTATACAAATTGTTAAATGGAATAATAATAGCAAATTTTCATTTTTGCCTTTTAACA
66 TATTGAAGTTAT-CAAACTGTTAAATGGAAAAATAATAGCAAATTTTCATTTTTGCCTTTTAACA
* * *
15725288 AAAAAAAAATCATAAACAAACATAAACGGTAACTTTTTCACACATATCAATCGTGAAAATCAAGT
130 AAAAAAAAATCATAAACAAACATAAACCGTAAC-TTTTCACACATATCAATCATGAAAACCAAGT
* * * *
15725353 TCAATTATTTGGACAAGTTTAATATCATATATTAAAGCTAT-AAACTACTAAAATATAACAATAA
194 TCAA-CA----GACAAATTTAATATCATATATTAAAACTATCAAACTACTAAAATAGAACAATAA
* * *
15725417 -TAGTAAAATTGTATTTTT-GCCTTTTAACGAGACAAAAAGTCCAAAATAGACA-AAATAG
254 CAACT-AAATTGTATTTTTAG-CTTTTAACGACACAAAAAGTCCAAAATAGACATAAATAG
* * * * * * *
15725475 TAACTTTTTCACATATATCAATTATGAAAACCAAATTTAATCATTCAGACAAGTTTAATATCATG
1 TAACTTTTTCACACATATCAATCATGAAAACTAAGTTCAATCATTTAGACAAGTTTAATATCATA
* *
15725540 TATTGAAGTTATCAAAACTGTTAAAAT-AAAAAATAATTA-CAAATTTGT-ATTTTTGACTTTTA
66 TATTGAAGTTATC-AAACTGTT-AAATGGAAAAATAA-TAGCAAATTT-TCATTTTTGCCTTTTA
* * * ** *
15725602 ACAACACAAAAAGTCTTAAACAAACATAAATTGTAACTTTTCATACATATCAAT
127 ACAA-AAAAAAAATCATAAACAAACATAAACCGTAACTTTTCACACATATCAAT
15725656 AATCTTTCCC
Statistics
Matches: 415, Mismatches: 67, Indels: 31
0.81 0.13 0.06
Matches are distributed among these distances:
315 56 0.13
316 42 0.10
317 196 0.47
318 95 0.23
320 26 0.06
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (312 bp):
TAACTTTTTCACACATATCAATCATGAAAACTAAGTTCAATCATTTAGACAAGTTTAATATCATA
TATTGAAGTTATCAAACTGTTAAATGGAAAAATAATAGCAAATTTTCATTTTTGCCTTTTAACAA
AAAAAAAATCATAAACAAACATAAACCGTAACTTTTCACACATATCAATCATGAAAACCAAGTTC
AACAGACAAATTTAATATCATATATTAAAACTATCAAACTACTAAAATAGAACAATAACAACTAA
ATTGTATTTTTAGCTTTTAACGACACAAAAAGTCCAAAATAGACATAAATAG
Found at i:15725503 original size:158 final size:161
Alignment explanation
Indices: 15724842--15725655 Score: 688
Period size: 159 Copynumber: 5.1 Consensus size: 161
15724832 ATGTAAAAGT
* * * *
15724842 TAAC-TTTTCACACATATCAACCATGAAAATCAAGTTCAATAATTT-GAACAAGTTTAATATTAT
1 TAACTTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTTAG-ACAAGTTTAATATCAT
* * * * * * ** *
15724905 TTATTGAAGTTATCCAAACTGA-TAAAAGAGAACAATTATAGTAAATTTACATTTTTACCTTTTA
65 ATATTAAAGCTAT-CAAACT-ATTAAAATAGAACAATAATAGTAAAATTGTATTTTTGCCTTTTA
* ** *
15724969 ACGACAAAAAAAAT-CATAAATAGATGTAAACCG
128 ACGACAAAAAAAGTCCATAAATAGACATAAACGG
* *
15725002 TAAC-TTTTCAACACATATCAATCATGAAAACCAAGTTCAA-C----AGATAAATTTAATATCAT
1 TAACTTTTTC-ACACATATCAATCATGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCAT
* * * * * *
15725061 GTATTAAAACTATCCAAACTGTTAAAATAGAACAATAACAACT-AATTTGTATTTTTAG-CTTTT
65 ATATTAAAGCTAT-CAAACTATTAAAATAGAACAATAA-TAGTAAAATTGTATTTTT-GCCTTTT
* ** *
15725124 AATGACATTAAAAGTCC-TAAATAGACATAAATGG
127 AACGACAAAAAAAGTCCATAAATAGACATAAACGG
* * * *
15725158 CAACTGTTTCACACATATTAATCATGAAAACTAAGTTCAATCATTTAGACAAGTTTAATATCATA
1 TAACTTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATA
* * * * * * *
15725223 TATTAAAACTATACAAATTGTT-AAATGGAATAATAATAG-CAAATTTTCATTTTTGCCTTTTAA
66 TATTAAAGCTAT-CAAACTATTAAAATAGAACAATAATAGTAAAATTGT-ATTTTTGCCTTTTAA
* * * *
15725286 C-AAAAAAAAAAT-CATAAACAAACATAAACGG
129 CGACAAAAAAAGTCCATAAATAGACATAAACGG
* * * *
15725317 TAACTTTTTCACACATATCAATCGTGAAAATCAAGTTCAATTATTTGGACAAGTTTAATATCATA
1 TAACTTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATA
* *
15725382 TATTAAAGCTAT-AAACTACTAAAATATAACAATAATAGTAAAATTGTATTTTTGCCTTTTAACG
66 TATTAAAGCTATCAAACTATTAAAATAGAACAATAATAGTAAAATTGTATTTTTGCCTTTTAACG
* * **
15725446 AGACAAAAAGTCCA-AAATAGACA-AAATAG
131 ACAAAAAAAGTCCATAAATAGACATAAACGG
* * * * * *
15725475 TAACTTTTTCACATATATCAATTATGAAAACCAAATTTAATCATTCAGACAAGTTTAATATCATG
1 TAACTTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATA
* * * * *
15725540 TATTGAAGTTATCAAAACTGTTAAAATA-AAAAATAAT--TACAAATTTGTATTTTTGACTTTTA
66 TATTAAAGCTATC-AAACTATTAAAATAGAACAATAATAGTA-AAA-TTGTATTTTTGCCTTTTA
* * * * * **
15725602 ACAACACAAAAAGT-CTTAAACAAACATAAATTG
128 ACGACAAAAAAAGTCCATAAATAGACATAAACGG
*
15725635 TAAC-TTTTCATACATATCAAT
1 TAACTTTTTCACACATATCAAT
15725656 AATCTTTCCC
Statistics
Matches: 531, Mismatches: 97, Indels: 53
0.78 0.14 0.08
Matches are distributed among these distances:
156 114 0.21
157 16 0.03
158 104 0.20
159 176 0.33
160 57 0.11
161 64 0.12
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (161 bp):
TAACTTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATA
TATTAAAGCTATCAAACTATTAAAATAGAACAATAATAGTAAAATTGTATTTTTGCCTTTTAACG
ACAAAAAAAGTCCATAAATAGACATAAACGG
Found at i:15727925 original size:18 final size:17
Alignment explanation
Indices: 15727898--15727936 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
15727888 AAAAATTAAC
*
15727898 GAAATTAAAAAGGAAAT
1 GAAATGAAAAAGGAAAT
*
15727915 AGAAATGAAAATGGAAAT
1 -GAAATGAAAAAGGAAAT
15727933 GAAA
1 GAAA
15727937 CAATCTAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.64, C:0.00, G:0.21, T:0.15
Consensus pattern (17 bp):
GAAATGAAAAAGGAAAT
Found at i:15728881 original size:18 final size:19
Alignment explanation
Indices: 15728858--15728893 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
15728848 TTCAAATTTG
15728858 ATAAAATAAAA-AATAATT
1 ATAAAATAAAATAATAATT
15728876 ATAAAATAAAATAATAAT
1 ATAAAATAAAATAATAAT
15728894 ATGTATAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (19 bp):
ATAAAATAAAATAATAATT
Found at i:15729110 original size:7 final size:7
Alignment explanation
Indices: 15729094--15729127 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
15729084 TTAATTATGC
15729094 ATTTAAA
1 ATTTAAA
*
15729101 ATTTAGA
1 ATTTAAA
*
15729108 ATTTAGA
1 ATTTAAA
15729115 ATTTAAA
1 ATTTAAA
15729122 ATTTAA
1 ATTTAA
15729128 TGATAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (7 bp):
ATTTAAA
Found at i:15731429 original size:21 final size:22
Alignment explanation
Indices: 15731404--15731450 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
15731394 TAATTAAATT
* *
15731404 ATAAATATATTATTTTTTA-AA
1 ATAAAAATATTATTTTTAATAA
*
15731425 ATAAAAATTTTATTTTTAATAA
1 ATAAAAATATTATTTTTAATAA
15731447 ATAA
1 ATAA
15731451 TCCTTTACTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATAAAAATATTATTTTTAATAA
Found at i:15731462 original size:22 final size:21
Alignment explanation
Indices: 15731417--15731473 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
15731407 AATATATTAT
*
15731417 TTTTTAAAATAAAAAT--TTTA
1 TTTTT-AAATAATAATCCTTTA
15731437 TTTTT-AATAAATAATCCTTTA
1 TTTTTAAAT-AATAATCCTTTA
15731458 CTTTTTAAATAATAAT
1 -TTTTTAAATAATAAT
15731474 ATATGTAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 3 0.10
19 5 0.16
20 5 0.16
21 4 0.13
22 11 0.35
23 3 0.10
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTTTAAATAATAATCCTTTA
Found at i:15732175 original size:29 final size:29
Alignment explanation
Indices: 15732095--15732177 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 29
15732085 TTTATTACAA
* *
15732095 TTAA-TAAATTTTTAAATTTTTATTTTTAT
1 TTAATTAAA-TTTTAAAATTTTATTTCTAT
* *
15732124 TTTATTAAATTGGTAAACA--TTATTTCTAT
1 TTAATTAAATT-TTAAA-ATTTTATTTCTAT
15732153 TTAATTAAATTTTAAAATTTTATTT
1 TTAATTAAATTTTAAAATTTTATTT
15732178 TTATCAAATT
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
27 1 0.02
28 4 0.09
29 30 0.70
30 8 0.19
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (29 bp):
TTAATTAAATTTTAAAATTTTATTTCTAT
Found at i:15732872 original size:30 final size:30
Alignment explanation
Indices: 15732802--15732873 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
15732792 AAATTATATT
15732802 TTTAAAAAA-TTTATGTAAGATATTAAAAA
1 TTTAAAAAATTTTATGTAAGATATTAAAAA
* ** * *
15732831 TTCAAGTAATTTTATGTAAGATTTTGAAAA
1 TTTAAAAAATTTTATGTAAGATATTAAAAA
15732861 TTTAAAAAATTTT
1 TTTAAAAAATTTT
15732874 CATTTTAAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
29 6 0.18
30 28 0.82
ACGTcount: A:0.47, C:0.01, G:0.08, T:0.43
Consensus pattern (30 bp):
TTTAAAAAATTTTATGTAAGATATTAAAAA
Found at i:15733364 original size:14 final size:15
Alignment explanation
Indices: 15733332--15733362 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15733322 GAAATATATC
*
15733332 AATTTTAAATTTAAA
1 AATTTTAAATATAAA
15733347 AATTTTAAATATAAA
1 AATTTTAAATATAAA
15733362 A
1 A
15733363 TTATTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AATTTTAAATATAAA
Found at i:15735317 original size:30 final size:30
Alignment explanation
Indices: 15735247--15735318 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
15735237 AAATTATCTT
15735247 TTTAAAAAA-TTTACGTAAGACATTAAAAA
1 TTTAAAAAATTTTACGTAAGACATTAAAAA
* ** * ** *
15735276 TTCAAGTAATTTTATGTAAGATTTTGAAAA
1 TTTAAAAAATTTTACGTAAGACATTAAAAA
15735306 TTTAAAAAATTTT
1 TTTAAAAAATTTT
15735319 CATCTTAAAT
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
29 6 0.19
30 26 0.81
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.40
Consensus pattern (30 bp):
TTTAAAAAATTTTACGTAAGACATTAAAAA
Found at i:15735621 original size:45 final size:46
Alignment explanation
Indices: 15735559--15735646 Score: 142
Period size: 45 Copynumber: 1.9 Consensus size: 46
15735549 TTTTTTTTTA
*
15735559 TTTTTTCAGTAACTTTTTTCCAAGATATATTTTATTAGTATTGTAT
1 TTTTTTCAGTAACTTTTTTCCAAGATATATTTTACTAGTATTGTAT
* *
15735605 TTTTTTTA-TAACTTTTTTCCAAGATATATTTTACTATTATTG
1 TTTTTTCAGTAACTTTTTTCCAAGATATATTTTACTAGTATTG
15735647 CAATTTCATT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 32 0.82
46 7 0.18
ACGTcount: A:0.26, C:0.09, G:0.07, T:0.58
Consensus pattern (46 bp):
TTTTTTCAGTAACTTTTTTCCAAGATATATTTTACTAGTATTGTAT
Found at i:15735703 original size:11 final size:11
Alignment explanation
Indices: 15735689--15735718 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
15735679 TAATTTATTT
15735689 TATTTTTCACA
1 TATTTTTCACA
15735700 TA-TTTTCACA
1 TATTTTTCACA
15735710 TATTTTTCA
1 TATTTTTCA
15735719 TATTTTGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.57
Consensus pattern (11 bp):
TATTTTTCACA
Found at i:15735705 original size:10 final size:10
Alignment explanation
Indices: 15735692--15735724 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
15735682 TTTATTTTAT
15735692 TTTTCACATA
1 TTTTCACATA
15735702 TTTTCACATA
1 TTTTCACATA
*
15735712 TTTT-TCATA
1 TTTTCACATA
15735721 TTTT
1 TTTT
15735725 GCATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTCACATA
Found at i:15736375 original size:16 final size:16
Alignment explanation
Indices: 15736356--15736408 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
15736346 TACTATTCAC
15736356 AAATTTAATTATTTAT
1 AAATTTAATTATTTAT
**
15736372 AAATTTATAACATTTAT
1 AAATTTA-ATTATTTAT
* *
15736389 AAATCTAATTAATTAT
1 AAATTTAATTATTTAT
15736405 AAAT
1 AAAT
15736409 AAATATACTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
16 17 0.57
17 13 0.43
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (16 bp):
AAATTTAATTATTTAT
Found at i:15737248 original size:2 final size:2
Alignment explanation
Indices: 15737241--15737274 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
15737231 AGGAACACAA
15737241 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15737275 GATTATCATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15738222 original size:21 final size:21
Alignment explanation
Indices: 15738163--15738220 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
15738153 TATGACCTCT
*
15738163 AATGTACATATGTGTTTAGATA
1 AATGTACATAT-TATTTAGATA
* *
15738185 ATTATACATATTATTTA-ATTA
1 AATGTACATATTATTTAGA-TA
15738206 AATGTACATA-TATTT
1 AATGTACATATTATTT
15738221 TATCTATATG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
20 6 0.20
21 15 0.50
22 9 0.30
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (21 bp):
AATGTACATATTATTTAGATA
Found at i:15743081 original size:62 final size:62
Alignment explanation
Indices: 15742995--15743115 Score: 145
Period size: 62 Copynumber: 2.0 Consensus size: 62
15742985 TTATTGAAGA
* * * **
15742995 TATTTTTAGTAGAAAATACCTTGAATAATTCTTTC-TAAAAAATTAGAGGGAATTATTCATGG
1 TATTTTTAGTAAAAAACACATTGAATAATTCACTCATAAAAAATTA-AGGGAATTATTCATGG
* * * *
15743057 TATTTTTGGTAAAAAACACATTGAATATTTCACTCATAAAAATTTAAGGGGATTATTCA
1 TATTTTTAGTAAAAAACACATTGAATAATTCACTCATAAAAAATTAAGGGAATTATTCA
15743116 AGGCTTTTGT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
62 40 0.82
63 9 0.18
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (62 bp):
TATTTTTAGTAAAAAACACATTGAATAATTCACTCATAAAAAATTAAGGGAATTATTCATGG
Found at i:15743206 original size:125 final size:125
Alignment explanation
Indices: 15743041--15743278 Score: 277
Period size: 125 Copynumber: 1.9 Consensus size: 125
15743031 AAAAAATTAG
* * * *
15743041 AGGGAATTATTCATGGTATTTTTGGTAAAAAACACATTGAAT-AT-TTCACTCATAAAAATTTAA
1 AGGGAATTATTCAAGATATTTTTGGTAAAAAACACATTGAATAATGAT-A-TCATAAAAATTGAA
* * * *
15743104 GGGGATTATTCAAGGCTTTTGTGCTCAGAAACGCCTTCAATAACCTCATTCAATTTTTCGTA
64 GAGGATTATTCAAGACTTTTGTGATCAGAAACGCATTCAATAACCTCATTCAATTTTTCGTA
* * *
15743166 AGGG-ATTATTCAAGATATTTTTTGGCT-AAAAACACCTTGAATAATGATATTATACAAATTGAA
1 AGGGAATTATTCAAGATA-TTTTTGG-TAAAAAACACATTGAATAATGATATCATAAAAATTGAA
* * * *
15743229 GAGGATTATTCAAGATTTTTTTTATCAGAAACGCATTGAATAACCTCATT
64 GAGGATTATTCAAGACTTTTGTGATCAGAAACGCATTCAATAACCTCATT
15743279 TATTCTAAAG
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
124 11 0.12
125 78 0.83
126 4 0.04
127 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (125 bp):
AGGGAATTATTCAAGATATTTTTGGTAAAAAACACATTGAATAATGATATCATAAAAATTGAAGA
GGATTATTCAAGACTTTTGTGATCAGAAACGCATTCAATAACCTCATTCAATTTTTCGTA
Found at i:15743612 original size:2 final size:2
Alignment explanation
Indices: 15743598--15743635 Score: 60
Period size: 2 Copynumber: 19.0 Consensus size: 2
15743588 AAGGGATTTG
15743598 AT AT AT A- AGT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15743636 TCTTCCCGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 32 0.94
3 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:15747036 original size:25 final size:25
Alignment explanation
Indices: 15747002--15747054 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
15746992 ATGGTTTTAA
*
15747002 ATGAGTGAACACCATGTGAAGCCTG
1 ATGAGTGAACACCATGTGAAACCTG
15747027 ATGAGTGAACACCATGTGAAACCTG
1 ATGAGTGAACACCATGTGAAACCTG
15747052 ATG
1 ATG
15747055 TTGTGACTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (25 bp):
ATGAGTGAACACCATGTGAAACCTG
Found at i:15750925 original size:2 final size:2
Alignment explanation
Indices: 15750918--15750951 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
15750908 AAAATATTAT
15750918 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
15750952 TATATATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:15751081 original size:28 final size:28
Alignment explanation
Indices: 15751049--15751103 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
15751039 AACCCTAAGT
*
15751049 TCAAGATGCCATACTTAATATAAACTAA
1 TCAAGATACCATACTTAATATAAACTAA
* *
15751077 TCAAGGTACCCTACTTAATATAAACTA
1 TCAAGATACCATACTTAATATAAACTA
15751104 GCAAGTAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (28 bp):
TCAAGATACCATACTTAATATAAACTAA
Found at i:15754873 original size:176 final size:175
Alignment explanation
Indices: 15754634--15754990 Score: 579
Period size: 176 Copynumber: 2.0 Consensus size: 175
15754624 TTCGAGTTCA
*
15754634 AAGATTCACATTCAATAAATTTAGAATTTCAAATCTAAATTCAAAGGTTCTCATTCAAAAAATTT
1 AAGATTCACATTCAATAAATTTAGAATTTCAAATCTAAATTCAAAAGTTCTCATTCAAAAAATTT
* * * *
15754699 AATGGTTCGTATCCAAAATTTCAAAGCTTTTTATTCAAAAACTTTTGGTGATTCACATCTGATAC
66 AAGGGTTCGCATCCAAAATTTCAAAGCTTCTTATTCAAAAACTTTTGGTGATTCACATATGATAC
*
15754764 TTCAAAGATTCAGATTAAAAAATTTTGGAAATTCACATAATTTTC
131 TTCAAAGATTCAGATTAAAAAATTTTAGAAATTCACATAATTTTC
* **
15754809 AAGATTCACATTCAATAAATTTTAGAGTTTCAAATCTAAATTCAAAAGTTCTCATTTGAAAAATT
1 AAGATTCACATTCAATAAA-TTTAGAATTTCAAATCTAAATTCAAAAGTTCTCATTCAAAAAATT
* *
15754874 TAGGGGTTTGCATCCAAAATTTCAAAGCTTCTTATTCAAAAACTTTTGGTGATTCACATATGATA
65 TAAGGGTTCGCATCCAAAATTTCAAAGCTTCTTATTCAAAAACTTTTGGTGATTCACATATGATA
** *
15754939 CTTCAAAGATTTGGATTCAAAAATTTTAGAAATTCACATAATTTTC
130 CTTCAAAGATTCAGATTAAAAAATTTTAGAAATTCACATAATTTTC
15754985 AAGATT
1 AAGATT
15754991 TCATTTGAAA
Statistics
Matches: 167, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
175 19 0.11
176 148 0.89
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (175 bp):
AAGATTCACATTCAATAAATTTAGAATTTCAAATCTAAATTCAAAAGTTCTCATTCAAAAAATTT
AAGGGTTCGCATCCAAAATTTCAAAGCTTCTTATTCAAAAACTTTTGGTGATTCACATATGATAC
TTCAAAGATTCAGATTAAAAAATTTTAGAAATTCACATAATTTTC
Found at i:15755168 original size:140 final size:134
Alignment explanation
Indices: 15755014--15755391 Score: 330
Period size: 139 Copynumber: 2.7 Consensus size: 134
15755004 AAAGGCAAAG
* ** *
15755014 ATTCTCACTTAAAACTTATTAA-ACACTCATTCAAAATTCAAAGATTCTCATCTAAAATTTCTTA
1 ATTCTCATTTAAAACTTA--AAGACAAACATTC-AAATTCAAAGATTCTCATCTAAAA---CTCA
* * *
15755078 AAG-ATTTAAAGC-TCTTTAAAGATTTTCATTTAAAGCTTAAAGACAAAGATTCTCATTCAAAGA
60 AAGTATTTAAAACTTC-TTAAAGATTCTCATTTAAA-CTTAAAGACAAAGATTCTAATTCAAAGA
15755141 TTCTCATTTACAA
123 TTCTCATTTA-AA
* * *** * *
15755154 ATTCTCATTTAAAACTCAAAGACAAAGATTCTCTTTTAAAGATTCTCATTTAAAACTCAAAGATT
1 ATTCTCATTTAAAACTTAAAGACAAACATTCAAATTCAAAGATTCTCATCTAAAACTCAAAG---
15755219 CTTATTTAAAACTTCTTAAAGATTCTCATTTAAACTTAAAGACAAAGATTCTAATTCAAAGATTC
63 --TATTTAAAACTTCTTAAAGATTCTCATTTAAACTTAAAGACAAAGATTCTAATTCAAAGATTC
15755284 TCATTTAAA
126 TCATTTAAA
* * * * * ** * * *
15755293 GTTCTAATTTAAAACTTAAGGATAAATATTCTCATTTAAAGATTCTTATTTAAAACTCAAAAATT
1 ATTCTCATTTAAAACTTAAAGACAAACATTCAAATTCAAAGATTCTCATCTAAAACTC--AAA--
* *
15755358 CTCATTTAAAACTTTTTAAAGATTCTCATTTAAA
62 GT-ATTTAAAACTTCTTAAAGATTCTCATTTAAA
15755392 ATTTTTTAAA
Statistics
Matches: 201, Mismatches: 24, Indels: 27
0.80 0.10 0.11
Matches are distributed among these distances:
135 6 0.03
138 22 0.11
139 89 0.44
140 53 0.26
141 29 0.14
142 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (134 bp):
ATTCTCATTTAAAACTTAAAGACAAACATTCAAATTCAAAGATTCTCATCTAAAACTCAAAGTAT
TTAAAACTTCTTAAAGATTCTCATTTAAACTTAAAGACAAAGATTCTAATTCAAAGATTCTCATT
TAAA
Found at i:15755180 original size:41 final size:41
Alignment explanation
Indices: 15755135--15755292 Score: 151
Period size: 41 Copynumber: 3.8 Consensus size: 41
15755125 GATTCTCATT
15755135 CAAAGATTCTCATTTACAA-ATTCTCATTTAAAACTCAAAGA
1 CAAAGATTCTCATTTA-AAGATTCTCATTTAAAACTCAAAGA
*
15755176 CAAAGATTCTCTTTTAAAGATTCTCATTTAAAACTCAAAGA
1 CAAAGATTCTCATTTAAAGATTCTCATTTAAAACTCAAAGA
** * ** * *
15755217 TTCTTA-TTTAAAACTTCTTAAAGATTCTCATTT-AAACTTAAAGA
1 --CAAAGATT--CTCAT-TTAAAGATTCTCATTTAAAACTCAAAGA
* *
15755261 CAAAGATTCTAATTCAAAGATTCTCATTTAAA
1 CAAAGATTCTCATTTAAAGATTCTCATTTAAA
15755293 GTTCTAATTT
Statistics
Matches: 94, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
40 17 0.18
41 40 0.43
42 4 0.04
43 4 0.04
44 13 0.14
45 16 0.17
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.36
Consensus pattern (41 bp):
CAAAGATTCTCATTTAAAGATTCTCATTTAAAACTCAAAGA
Found at i:15755205 original size:14 final size:14
Alignment explanation
Indices: 15755122--15755415 Score: 105
Period size: 14 Copynumber: 23.2 Consensus size: 14
15755112 GCTTAAAGAC
*
15755122 AAAGATTCTCATTC
1 AAAGATTCTCATTT
15755136 AAAGATTCTCATTT
1 AAAGATTCTCATTT
15755150 ACAA-ATTCTCATTT
1 A-AAGATTCTCATTT
* ** ***
15755164 AAA-ACTCAAAGAC
1 AAAGATTCTCATTT
*
15755177 AAAGATTCTCTTTT
1 AAAGATTCTCATTT
15755191 AAAGATTCTCATTT
1 AAAGATTCTCATTT
15755205 AAA-A--CTC----
1 AAAGATTCTCATTT
*
15755212 AAAGATTCTTATTT
1 AAAGATTCTCATTT
*
15755226 AAA-ACT-TC--TT
1 AAAGATTCTCATTT
15755236 AAAGATTCTCATTT
1 AAAGATTCTCATTT
* ** ***
15755250 AAA-CTT-AAAGAC
1 AAAGATTCTCATTT
* *
15755262 AAAGATTCTAATTC
1 AAAGATTCTCATTT
15755276 AAAGATTCTCATTT
1 AAAGATTCTCATTT
*
15755290 AAAG-TTCTAATTT
1 AAAGATTCTCATTT
* * **
15755303 AAA-ACT-TAAGGAT
1 AAAGATTCTCA-TTT
*
15755316 AAATATTCTCATTT
1 AAAGATTCTCATTT
*
15755330 AAAGATTCTTATTT
1 AAAGATTCTCATTT
15755344 AAA-A--CTCA---
1 AAAGATTCTCATTT
15755352 AAA-ATTCTCATTT
1 AAAGATTCTCATTT
*
15755365 AAA-A--CT-TTTT
1 AAAGATTCTCATTT
15755375 AAAGATTCTCATTT
1 AAAGATTCTCATTT
15755389 AAA-ATT-T--TTT
1 AAAGATTCTCATTT
15755399 AAAGATTCTCATTT
1 AAAGATTCTCATTT
15755413 AAA
1 AAA
15755416 AATCAAAGAC
Statistics
Matches: 204, Mismatches: 44, Indels: 64
0.65 0.14 0.21
Matches are distributed among these distances:
7 3 0.01
8 5 0.02
10 23 0.11
11 14 0.07
12 12 0.06
13 42 0.21
14 101 0.50
15 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.39
Consensus pattern (14 bp):
AAAGATTCTCATTT
Found at i:15755217 original size:21 final size:21
Alignment explanation
Indices: 15755191--15755260 Score: 88
Period size: 21 Copynumber: 3.2 Consensus size: 21
15755181 ATTCTCTTTT
15755191 AAAGATTCTCATTTAAAACTC
1 AAAGATTCTCATTTAAAACTC
*
15755212 AAAGATTCTTATTTAAAACTTC
1 AAAGATTCTCATTTAAAAC-TC
*
15755234 TTAAAGATTCTCATTT-AAACTT
1 --AAAGATTCTCATTTAAAACTC
15755256 AAAGA
1 AAAGA
15755261 CAAAGATTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
20 5 0.12
21 18 0.42
22 3 0.07
23 4 0.09
24 13 0.30
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (21 bp):
AAAGATTCTCATTTAAAACTC
Found at i:15755244 original size:24 final size:23
Alignment explanation
Indices: 15755189--15755252 Score: 96
Period size: 21 Copynumber: 2.8 Consensus size: 23
15755179 AGATTCTCTT
15755189 TTAAAGATTCTCATTTAAAACTC
1 TTAAAGATTCTCATTTAAAACTC
*
15755212 --AAAGATTCTTATTTAAAACTTC
1 TTAAAGATTCTCATTTAAAAC-TC
15755234 TTAAAGATTCTCATTTAAA
1 TTAAAGATTCTCATTTAAA
15755253 CTTAAAGACA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
21 18 0.50
22 2 0.06
24 16 0.44
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (23 bp):
TTAAAGATTCTCATTTAAAACTC
Found at i:15755308 original size:54 final size:54
Alignment explanation
Indices: 15755234--15755346 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
15755224 TTAAAACTTC
*
15755234 TTAAAGATTCTCATTTAAACTTAAAGACAAAGATTCTAATTCAAAGATTCTCAT
1 TTAAAGATTCTAATTTAAACTTAAAGACAAAGATTCTAATTCAAAGATTCTCAT
* * * * * *
15755288 TTAAAG-TTCTAATTTAAAACTTAAGGATAAATATTCTCATTTAAAGATTCTTAT
1 TTAAAGATTCTAATTT-AAACTTAAAGACAAAGATTCTAATTCAAAGATTCTCAT
15755342 TTAAA
1 TTAAA
15755347 ACTCAAAAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 8 0.16
54 43 0.84
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (54 bp):
TTAAAGATTCTAATTTAAACTTAAAGACAAAGATTCTAATTCAAAGATTCTCAT
Found at i:15755348 original size:139 final size:141
Alignment explanation
Indices: 15755093--15755391 Score: 467
Period size: 139 Copynumber: 2.1 Consensus size: 141
15755083 TTAAAGCTCT
* *
15755093 TTAAAGATTTTCATTTAAAGCTTAAAGACAAAGATTCTCATTCAAAGATTCTCATTTACAAATTC
1 TTAAAGATTCTCATTTAAAGCTTAAAGACAAAGATTCTAATTCAAAGATTCTCATTTACAAATTC
* * * *
15755158 TCATTTAAAACTCAAAGACAAAGATTCTCTTTTAAAGATTCTCATTTAAAACTCAAAGATTCTTA
66 TAATTTAAAACTCAAAGACAAAGATTCTCATTTAAAGATTCTCATTTAAAACTCAAAAATTCTCA
15755223 TTTAAAACTTC
131 TTTAAAACTTC
*
15755234 TTAAAGATTCTCATTTAAA-CTTAAAGACAAAGATTCTAATTCAAAGATTCTCATTTA-AAGTTC
1 TTAAAGATTCTCATTTAAAGCTTAAAGACAAAGATTCTAATTCAAAGATTCTCATTTACAAATTC
* * * * *
15755297 TAATTTAAAACTTAAGGATAAATATTCTCATTTAAAGATTCTTATTTAAAACTCAAAAATTCTCA
66 TAATTTAAAACTCAAAGACAAAGATTCTCATTTAAAGATTCTCATTTAAAACTCAAAAATTCTCA
*
15755362 TTTAAAACTTT
131 TTTAAAACTTC
15755373 TTAAAGATTCTCATTTAAA
1 TTAAAGATTCTCATTTAAA
15755392 ATTTTTTAAA
Statistics
Matches: 145, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
139 90 0.62
140 37 0.26
141 18 0.12
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.38
Consensus pattern (141 bp):
TTAAAGATTCTCATTTAAAGCTTAAAGACAAAGATTCTAATTCAAAGATTCTCATTTACAAATTC
TAATTTAAAACTCAAAGACAAAGATTCTCATTTAAAGATTCTCATTTAAAACTCAAAAATTCTCA
TTTAAAACTTC
Found at i:15755387 original size:24 final size:24
Alignment explanation
Indices: 15755327--15755416 Score: 123
Period size: 24 Copynumber: 3.9 Consensus size: 24
15755317 AATATTCTCA
*
15755327 TTTAAAGATTCTTATTTAAAAC--
1 TTTAAAGATTCTCATTTAAAACTT
* *
15755349 -TCAAAAATTCTCATTTAAAACTT
1 TTTAAAGATTCTCATTTAAAACTT
*
15755372 TTTAAAGATTCTCATTTAAAATTT
1 TTTAAAGATTCTCATTTAAAACTT
15755396 TTTAAAGATTCTCATTTAAAA
1 TTTAAAGATTCTCATTTAAAA
15755417 ATCAAAGACA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
21 18 0.31
24 41 0.69
ACGTcount: A:0.41, C:0.11, G:0.03, T:0.44
Consensus pattern (24 bp):
TTTAAAGATTCTCATTTAAAACTT
Found at i:15755430 original size:110 final size:109
Alignment explanation
Indices: 15755287--15755498 Score: 291
Period size: 110 Copynumber: 1.9 Consensus size: 109
15755277 AAGATTCTCA
* * * * *
15755287 TTTAAAGTTCTAATTTAAAACTTAAGGATAAATATTCTCATTTAAAGATTCTT-ATTTAAAACTC
1 TTTAAAGTTCTAATTTAAAAATCAAAGACAAATATTCTCATTCAAAGATT-TTCATTTAAAACTC
* *
15755351 AAAAATTCTCATTTAAAACTTTTTAAAGATTCTCATTTAAAATTT
65 AAAAATTCTCATTTAAAACTTATTAAAAATTCTCATTTAAAATTT
* * *
15755396 TTTAAAGATTCTCATTTAAAAATCAAAGACAAATATTCTCATTCAAGGATTTTCATTTAAAATTC
1 TTTAAAG-TTCTAATTTAAAAATCAAAGACAAATATTCTCATTCAAAGATTTTCATTTAAAACTC
* *
15755461 AAAGATTTTCATTTAAAACTTATTAAAAATTCTCATTT
65 AAAAATTCTCATTTAAAACTTATTAAAAATTCTCATTT
15755499 GAAACTTAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
109 9 0.10
110 80 0.90
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.42
Consensus pattern (109 bp):
TTTAAAGTTCTAATTTAAAAATCAAAGACAAATATTCTCATTCAAAGATTTTCATTTAAAACTCA
AAAATTCTCATTTAAAACTTATTAAAAATTCTCATTTAAAATTT
Found at i:15755460 original size:21 final size:21
Alignment explanation
Indices: 15755436--15755478 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
15755426 AAATATTCTC
*
15755436 ATTCAAGGATTTTCATTTAAA
1 ATTCAAAGATTTTCATTTAAA
15755457 ATTCAAAGATTTTCATTTAAA
1 ATTCAAAGATTTTCATTTAAA
15755478 A
1 A
15755479 CTTATTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (21 bp):
ATTCAAAGATTTTCATTTAAA
Found at i:15755465 original size:86 final size:86
Alignment explanation
Indices: 15755375--15755538 Score: 238
Period size: 86 Copynumber: 1.9 Consensus size: 86
15755365 AAAACTTTTT
* * * *
15755375 AAAGATTCTCATTTAAAATTTTTTAAAGATTCTCATTTAAAAATCAAAGACAAATATTCTCATTC
1 AAAGATTCTCATTTAAAACTTATTAAAAATTCTCATTTAAAAATCAAAGACAAAGATTCTCATTC
*
15755440 AAGGATTTTCATTTAAAATTC
66 AAAGATTTTCATTTAAAATTC
* * * * *
15755461 AAAGATTTTCATTTAAAACTTATTAAAAATTCTCATTTGAAACTTAAAGATAAAGATTCTCATTC
1 AAAGATTCTCATTTAAAACTTATTAAAAATTCTCATTTAAAAATCAAAGACAAAGATTCTCATTC
15755526 AAAGATTTTCATT
66 AAAGATTTTCATT
15755539 ATTTTTAATA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
86 68 1.00
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (86 bp):
AAAGATTCTCATTTAAAACTTATTAAAAATTCTCATTTAAAAATCAAAGACAAAGATTCTCATTC
AAAGATTTTCATTTAAAATTC
Found at i:15758039 original size:9 final size:9
Alignment explanation
Indices: 15758017--15758045 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
15758007 AACCCTAAAA
15758017 TTTTATTT-
1 TTTTATTTC
15758025 TTTTATTTC
1 TTTTATTTC
15758034 TTTTATTTC
1 TTTTATTTC
15758043 TTT
1 TTT
15758046 CCCCCTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTATTTC
Found at i:15772348 original size:14 final size:14
Alignment explanation
Indices: 15772329--15772358 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
15772319 TATAATTTTG
15772329 TTTAAAAATAAAAA
1 TTTAAAAATAAAAA
15772343 TTTAAAAATAAAAA
1 TTTAAAAATAAAAA
15772357 TT
1 TT
15772359 ATAATTTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
TTTAAAAATAAAAA
Found at i:15773178 original size:24 final size:24
Alignment explanation
Indices: 15773150--15773201 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
15773140 TTTTAATGAA
*
15773150 ATTTTT-TTTGTGTTATATTTATT
1 ATTTTTATTTATGTTATATTTATT
15773173 ATTTTTATTTATGTTATATTTATT
1 ATTTTTATTTATGTTATATTTATT
15773197 ATTTT
1 ATTTT
15773202 ATTAAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (24 bp):
ATTTTTATTTATGTTATATTTATT
Found at i:15773215 original size:28 final size:24
Alignment explanation
Indices: 15773160--15773206 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
15773150 ATTTTTTTTG
*
15773160 TGTTATATTTATTATTTTTATTTA
1 TGTTATATTTATTATTTTTATTAA
15773184 TGTTATATTTATTA-TTTTATTAA
1 TGTTATATTTATTATTTTTATTAA
15773207 ATTAATGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (24 bp):
TGTTATATTTATTATTTTTATTAA
Found at i:15774313 original size:12 final size:12
Alignment explanation
Indices: 15774296--15774326 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
15774286 CTTAGGACAG
15774296 ATCAACTTGAAT
1 ATCAACTTGAAT
15774308 ATCAACTTGAAT
1 ATCAACTTGAAT
*
15774320 ATGAACT
1 ATCAACT
15774327 AGAGAGGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (12 bp):
ATCAACTTGAAT
Found at i:15787249 original size:18 final size:16
Alignment explanation
Indices: 15787226--15787262 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 16
15787216 TAAAACAAAA
15787226 TTTTCTTTTCTTTTCTTT
1 TTTTCTTTT-TTTT-TTT
15787244 TTTTCTTTTTTTTTTT
1 TTTTCTTTTTTTTTTT
15787260 TTT
1 TTT
15787263 GAAACAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 4 0.21
18 9 0.47
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (16 bp):
TTTTCTTTTTTTTTTT
Found at i:15787260 original size:13 final size:13
Alignment explanation
Indices: 15787226--15787260 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
15787216 TAAAACAAAA
*
15787226 TTTTCTTTTCTTT
1 TTTTTTTTTCTTT
*
15787239 TCTTTTTTTCTTT
1 TTTTTTTTTCTTT
15787252 TTTTTTTTT
1 TTTTTTTTT
15787261 TTGAAACAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (13 bp):
TTTTTTTTTCTTT
Found at i:15787272 original size:69 final size:71
Alignment explanation
Indices: 15787158--15787305 Score: 230
Period size: 69 Copynumber: 2.1 Consensus size: 71
15787148 TTTTCTTCCC
*
15787158 TTTTCTTTTCTTTTTTCTTTTCCCTTTTTTTTTTTTGAAATAAGAAATAAATCAAATTTAAAACA
1 TTTTCTTTTCTTTTTTCTTTTCCCTTTTTTTTTTTTGAAACAAGAAATAAATCAAATTTAAAACA
15787223 -AA-A-
66 TAACAT
* **
15787226 TTTTCTTTTCTTTTCTTTTTTTCTTTTTTTTTTTTTTGAAACAAGAAATAAATCAAATTTAAAAC
1 TTTTCTTTTCTTTT-TTCTTTTCCCTTTTTTTTTTTTGAAACAAGAAATAAATCAAATTTAAAAC
15787291 ATAACAT
65 ATAACAT
15787298 TTTTCTTT
1 TTTTCTTT
15787306 AAAAAAAAAC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
68 14 0.19
69 47 0.65
70 2 0.03
71 1 0.01
72 8 0.11
ACGTcount: A:0.30, C:0.11, G:0.03, T:0.56
Consensus pattern (71 bp):
TTTTCTTTTCTTTTTTCTTTTCCCTTTTTTTTTTTTGAAACAAGAAATAAATCAAATTTAAAACA
TAACAT
Found at i:15787816 original size:13 final size:13
Alignment explanation
Indices: 15787800--15787863 Score: 53
Period size: 13 Copynumber: 4.9 Consensus size: 13
15787790 GAGTTTGAGG
15787800 TTAGGATTTAGGT
1 TTAGGATTTAGGT
15787813 TTAGGATTTAAGGT
1 TTAGGATTT-AGGT
* *
15787827 TT-GAATTTGGGGT
1 TTAGGATTT-AGGT
*
15787840 TTA-GAGTTAGAGT
1 TTAGGATTTAG-GT
15787853 TTAGG-TTTAGG
1 TTAGGATTTAGG
15787864 GTTTGAATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
12 2 0.05
13 31 0.77
14 7 0.17
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (13 bp):
TTAGGATTTAGGT
Done.