Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 87 of 117
Found at i:15787869 original size:39 final size:39
Alignment explanation
Indices: 15787807--15787881 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
15787797 AGGTTAGGAT
15787807 TTAGGTTTAGGATTTAAGGTTTGAATTTGGGGTTTAGAG
1 TTAGGTTTAGGATTTAAGGTTTGAATTTGGGGTTTAGAG
* *
15787846 TTAGAGTTTAGG-TTTAGGGTTTGAATTTGGGTTTTA
1 TTAG-GTTTAGGATTTAAGGTTTGAATTTGGGGTTTA
15787882 AGGCTTGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 26 0.79
40 7 0.21
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (39 bp):
TTAGGTTTAGGATTTAAGGTTTGAATTTGGGGTTTAGAG
Found at i:15787957 original size:19 final size:20
Alignment explanation
Indices: 15787907--15787961 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
15787897 GTGGAGTTTA
*
15787907 GGGTTT-GGATTTAGGATTTG
1 GGGTTTAGGGTTT-GGATTTG
* *
15787927 GGGTTGAAGGTTTGGATTT-
1 GGGTTTAGGGTTTGGATTTG
15787946 GGGTTTAGGGTTTGGA
1 GGGTTTAGGGTTTGGA
15787962 GTCAATGTGG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 14 0.48
20 11 0.38
21 4 0.14
ACGTcount: A:0.15, C:0.00, G:0.44, T:0.42
Consensus pattern (20 bp):
GGGTTTAGGGTTTGGATTTG
Found at i:15789291 original size:11 final size:11
Alignment explanation
Indices: 15789275--15789349 Score: 64
Period size: 11 Copynumber: 6.9 Consensus size: 11
15789265 GCACAAAAAA
15789275 TTTTTTCTCTT
1 TTTTTTCTCTT
*
15789286 TTTTTTCAC-T
1 TTTTTTCTCTT
*
15789296 TTTTTCCTCTAT
1 TTTTTTCTCT-T
* *
15789308 TTTTCTCTATT
1 TTTTTTCTCTT
*
15789319 TTTTTTCACTT
1 TTTTTTCTCTT
**
15789330 TTTTAGCTC-T
1 TTTTTTCTCTT
15789340 TTTTTTCTCT
1 TTTTTTCTCT
15789350 CCTGTTTTCT
Statistics
Matches: 47, Mismatches: 14, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
10 16 0.34
11 23 0.49
12 8 0.17
ACGTcount: A:0.07, C:0.20, G:0.01, T:0.72
Consensus pattern (11 bp):
TTTTTTCTCTT
Found at i:15789326 original size:33 final size:34
Alignment explanation
Indices: 15789274--15789349 Score: 111
Period size: 33 Copynumber: 2.3 Consensus size: 34
15789264 AGCACAAAAA
*
15789274 ATTTTT-TCTCTTTTTTTTCACTTTTTT-CCTCT
1 ATTTTTCTCTATTTTTTTTCACTTTTTTACCTCT
*
15789306 ATTTTTCTCTATTTTTTTTCACTTTTTTAGCTCT
1 ATTTTTCTCTATTTTTTTTCACTTTTTTACCTCT
*
15789340 TTTTTTCTCT
1 ATTTTTCTCT
15789350 CCTGTTTTCT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
32 6 0.15
33 20 0.51
34 13 0.33
ACGTcount: A:0.08, C:0.20, G:0.01, T:0.71
Consensus pattern (34 bp):
ATTTTTCTCTATTTTTTTTCACTTTTTTACCTCT
Found at i:15793640 original size:74 final size:74
Alignment explanation
Indices: 15793553--15793725 Score: 213
Period size: 73 Copynumber: 2.4 Consensus size: 74
15793543 AATCCTTTAC
** * *
15793553 CTTTTAATGTTCAAAAAATGTGAATTGCAGCTTGATAAGATGGATCTTTTTATTAAAAGGATCGA
1 CTTTTAACATTCAAAAAATGTGAATTGCAGCCTGATAAGATGGATCTTTTTATTAAAAGGATCAA
15793618 TCAATTAGT
66 TCAATTAGT
* * * *
15793627 CTTTTAACATTC-AAAAATGAGAATTGTAGCCTGATAAGATGGCTCTTTTTATTAAAGGGATCAA
1 CTTTTAACATTCAAAAAATGTGAATTGCAGCCTGATAAGATGGATCTTTTTATTAAAAGGATCAA
* *
15793691 TCCATTTGT
66 TCAATTAGT
* * * *
15793700 ATTCTAACATTCAAAAATTTTGAATT
1 CTTTTAACATTCAAAAAATGTGAATT
15793726 ATAATGTGAA
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
73 63 0.76
74 20 0.24
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (74 bp):
CTTTTAACATTCAAAAAATGTGAATTGCAGCCTGATAAGATGGATCTTTTTATTAAAAGGATCAA
TCAATTAGT
Found at i:15793662 original size:73 final size:73
Alignment explanation
Indices: 15793566--15793717 Score: 214
Period size: 73 Copynumber: 2.1 Consensus size: 73
15793556 TTAATGTTCA
* * * * *
15793566 AAAAATGTGAATTGCAGCTTGATAAGATGGATCTTTTTATTAAAAGGATCGATCAATTAGTCTTT
1 AAAAATGAGAATTGCAGCCTGATAAGATGGATCTTTTTATTAAAAGGATCAATCAATTAGTATTC
15793631 TAACATTC
66 TAACATTC
* * * * *
15793639 AAAAATGAGAATTGTAGCCTGATAAGATGGCTCTTTTTATTAAAGGGATCAATCCATTTGTATTC
1 AAAAATGAGAATTGCAGCCTGATAAGATGGATCTTTTTATTAAAAGGATCAATCAATTAGTATTC
15793704 TAACATTC
66 TAACATTC
15793712 AAAAAT
1 AAAAAT
15793718 TTTGAATTAT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.36
Consensus pattern (73 bp):
AAAAATGAGAATTGCAGCCTGATAAGATGGATCTTTTTATTAAAAGGATCAATCAATTAGTATTC
TAACATTC
Found at i:15796803 original size:13 final size:13
Alignment explanation
Indices: 15796781--15796815 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
15796771 AAAAGGTATA
15796781 TAAT-GTGATTAT
1 TAATAGTGATTAT
15796793 TAATAGTGATTAT
1 TAATAGTGATTAT
15796806 TAATAGTGAT
1 TAATAGTGAT
15796816 AGTTTTGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 4 0.18
13 18 0.82
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (13 bp):
TAATAGTGATTAT
Found at i:15800054 original size:30 final size:30
Alignment explanation
Indices: 15800020--15800080 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
15800010 GCTGGATTGG
15800020 AGATTGATTTCATATTGACAAAATTAATAA
1 AGATTGATTTCATATTGACAAAATTAATAA
* *
15800050 AGATTGATTTCATATTGGCTAAATTAATAA
1 AGATTGATTTCATATTGACAAAATTAATAA
15800080 A
1 A
15800081 AATTTGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (30 bp):
AGATTGATTTCATATTGACAAAATTAATAA
Found at i:15802748 original size:31 final size:31
Alignment explanation
Indices: 15802712--15802791 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
15802702 TTTTTATATT
*
15802712 AATATAATATTTTAATATTAAATACTATTAA-
1 AATATAATATTTTAATATT-AATAATATTAAC
* *
15802743 AATATAATTTTTTTAATATTAATAATTTTAAC
1 AATATAA-TATTTTAATATTAATAATATTAAC
*
15802775 AATA-AATAATTTAATAT
1 AATATAATATTTTAATAT
15802792 ATTTTAATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
30 9 0.21
31 18 0.43
32 15 0.36
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (31 bp):
AATATAATATTTTAATATTAATAATATTAAC
Found at i:15802771 original size:15 final size:15
Alignment explanation
Indices: 15802710--15802791 Score: 53
Period size: 16 Copynumber: 5.5 Consensus size: 15
15802700 GTTTTTTATA
15802710 TTAATA-TAAT-ATT
1 TTAATATTAATAATT
* *
15802723 TTAATATTAAATACTA
1 TTAATATT-AATAATT
* **
15802739 TTAAAATATAATTTTT
1 TTAATAT-TAATAATT
15802755 TTAATATTAATAATT
1 TTAATATTAATAATT
* *
15802770 TTAACAATAAATAA-T
1 TTAA-TATTAATAATT
15802785 TTAATAT
1 TTAATAT
15802792 ATTTTAATTA
Statistics
Matches: 52, Mismatches: 12, Indels: 9
0.71 0.16 0.12
Matches are distributed among these distances:
13 6 0.12
14 3 0.06
15 18 0.35
16 24 0.46
17 1 0.02
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
TTAATATTAATAATT
Found at i:15802818 original size:25 final size:24
Alignment explanation
Indices: 15802756--15802825 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
15802746 ATAATTTTTT
* *
15802756 TAATATTAATAATTTTAACAATAAA
1 TAATTTTAAT-ATTTTAATAATAAA
* *
15802781 TAATTTAATATATTTTAATTATAAA
1 TAATTTTA-ATATTTTAATAATAAA
15802806 TAATTTTTAATATTTTAATA
1 TAA-TTTTAATATTTTAATA
15802826 GTTATGTTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
25 31 0.84
26 6 0.16
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (24 bp):
TAATTTTAATATTTTAATAATAAA
Found at i:15804308 original size:27 final size:27
Alignment explanation
Indices: 15804270--15804321 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
15804260 TGAAGTGGCT
15804270 ATAAATTCTTTAACATCTATAGAAAATA
1 ATAAATTCTTTAACATCTAT-GAAAATA
15804298 ATAAA-TCTTTAACATCTATGAAAA
1 ATAAATTCTTTAACATCTATGAAAA
15804322 GCAAAGCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 5 0.21
27 14 0.58
28 5 0.21
ACGTcount: A:0.50, C:0.12, G:0.04, T:0.35
Consensus pattern (27 bp):
ATAAATTCTTTAACATCTATGAAAATA
Found at i:15820918 original size:49 final size:49
Alignment explanation
Indices: 15820864--15820957 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
15820854 CCCAATTTTG
* * *
15820864 AGGTAAGGTTAGGACAAAATCGACAAATTTGAAGCAA-ATTTGAGGTATA
1 AGGTAAGGTTAGGACAAAATCAACAAATCTAAAGCAAGA-TTGAGGTATA
15820913 AGGTAAGGTTAGGACAAAATCAACAAATCTAAAGCAAGATTGAGG
1 AGGTAAGGTTAGGACAAAATCAACAAATCTAAAGCAAGATTGAGG
15820958 CATATTTTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
49 40 0.98
50 1 0.02
ACGTcount: A:0.45, C:0.10, G:0.24, T:0.21
Consensus pattern (49 bp):
AGGTAAGGTTAGGACAAAATCAACAAATCTAAAGCAAGATTGAGGTATA
Found at i:15821845 original size:42 final size:43
Alignment explanation
Indices: 15821798--15821883 Score: 129
Period size: 42 Copynumber: 2.0 Consensus size: 43
15821788 GATTTCAATA
* * *
15821798 GATCCAAGGGATGAAATTAAACTATTTTTTT-TATTTGTACTT
1 GATCCAAAGGATGAAATTAAAATATTTTTTTCTATTTGCACTT
*
15821840 GATCCAAAGGATGATATTAAAATATTTTTTTCTATTTGCACTT
1 GATCCAAAGGATGAAATTAAAATATTTTTTTCTATTTGCACTT
15821883 G
1 G
15821884 TTTTTTCATC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 28 0.72
43 11 0.28
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.44
Consensus pattern (43 bp):
GATCCAAAGGATGAAATTAAAATATTTTTTTCTATTTGCACTT
Found at i:15821978 original size:2 final size:2
Alignment explanation
Indices: 15821971--15822000 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15821961 TTGATTCCTC
15821971 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15822001 ACCATATCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15832573 original size:24 final size:24
Alignment explanation
Indices: 15832541--15832589 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
15832531 ATAACTCTCA
* *
15832541 TATGCCTTATATAGGGGTTTAGAC
1 TATGCCTTATATAGAGGTTCAGAC
15832565 TATGCCTTATATAGAGGTTCAGAC
1 TATGCCTTATATAGAGGTTCAGAC
15832589 T
1 T
15832590 CTTGTTAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (24 bp):
TATGCCTTATATAGAGGTTCAGAC
Found at i:15833170 original size:12 final size:12
Alignment explanation
Indices: 15833162--15833188 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
15833152 GAAAATACAC
15833162 AAAAAAATAAAA
1 AAAAAAATAAAA
15833174 AAAAAAATAAAA
1 AAAAAAATAAAA
15833186 AAA
1 AAA
15833189 TTTACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (12 bp):
AAAAAAATAAAA
Found at i:15833547 original size:16 final size:16
Alignment explanation
Indices: 15833528--15833566 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
15833518 TAAAATACCT
* *
15833528 AAAAATTAAACTTGCC
1 AAAAATAAAACATGCC
*
15833544 AAAAATAAAACATGCT
1 AAAAATAAAACATGCC
15833560 AAAAATA
1 AAAAATA
15833567 TGAAGTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.62, C:0.13, G:0.05, T:0.21
Consensus pattern (16 bp):
AAAAATAAAACATGCC
Found at i:15838188 original size:10 final size:10
Alignment explanation
Indices: 15838173--15838207 Score: 52
Period size: 10 Copynumber: 3.3 Consensus size: 10
15838163 GTTAGAAAAT
15838173 AAAAAATAAA
1 AAAAAATAAA
15838183 AAAAAATAAGA
1 AAAAAATAA-A
15838194 AAACAAATAAA
1 AAA-AAATAAA
15838205 AAA
1 AAA
15838208 TTTTGGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 9 0.39
11 8 0.35
12 6 0.26
ACGTcount: A:0.86, C:0.03, G:0.03, T:0.09
Consensus pattern (10 bp):
AAAAAATAAA
Found at i:15839836 original size:64 final size:65
Alignment explanation
Indices: 15839759--15839899 Score: 194
Period size: 64 Copynumber: 2.2 Consensus size: 65
15839749 TTATAAAGAA
* *
15839759 AATTTTTAGAAAATAAATTCATAAATTCCTACTAAATTATTAGAGAATTTTATGAGTTT-AAAAC
1 AATTTTTAAAAAATAAATTCATAAATTCCTACTAAATCATTAGAGAATTTTATGAGTTTAAAAAC
* ** ** * *
15839823 AATTTTTAAAAAATTAATTCATAAATTTTTACTAAATCATTAGAGGGTTTTATGGGTTTAAAAAT
1 AATTTTTAAAAAATAAATTCATAAATTCCTACTAAATCATTAGAGAATTTTATGAGTTTAAAAAC
15839888 AATTTTTAAAAA
1 AATTTTTAAAAA
15839900 TTAATCTATT
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
64 51 0.76
65 16 0.24
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.41
Consensus pattern (65 bp):
AATTTTTAAAAAATAAATTCATAAATTCCTACTAAATCATTAGAGAATTTTATGAGTTTAAAAAC
Found at i:15840264 original size:12 final size:13
Alignment explanation
Indices: 15840243--15840268 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15840233 TGGAATAAGT
15840243 AAAGATTTTTTTA
1 AAAGATTTTTTTA
15840256 AAAGATTTTTTTA
1 AAAGATTTTTTTA
15840269 GGCTTTGGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
AAAGATTTTTTTA
Found at i:15842431 original size:37 final size:38
Alignment explanation
Indices: 15842380--15842477 Score: 128
Period size: 39 Copynumber: 2.6 Consensus size: 38
15842370 GCAAAGTTCT
* *
15842380 TAAAAATTCTAAAAAATCTAAAATA-TTTTAAGAAATTA
1 TAAAAACT-TAAAAAATCTAAAATATTTTTAAAAAATTA
*
15842418 TAAAAACTTAAAAAAACTAAAATATTTTTTAAAAAATTA
1 TAAAAACTTAAAAAATCTAAAATA-TTTTTAAAAAATTA
*
15842457 TGAAAACTTAAAAAAT-TAAAA
1 TAAAAACTTAAAAAATCTAAAA
15842478 ACAAATCTCA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
37 15 0.28
38 12 0.23
39 26 0.49
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (38 bp):
TAAAAACTTAAAAAATCTAAAATATTTTTAAAAAATTA
Found at i:15842490 original size:20 final size:19
Alignment explanation
Indices: 15842467--15842513 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
15842457 TGAAAACTTA
15842467 AAAAATTAA-AAACAAATCTC
1 AAAAATTAATAAA-AAATC-C
*
15842487 AAAATTTTAATAAAAAATCC
1 AAAA-ATTAATAAAAAATCC
15842507 AAAAATT
1 AAAAATT
15842514 TTCAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
19 2 0.09
20 9 0.39
21 9 0.39
22 3 0.13
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAAATTAATAAAAAATCC
Found at i:15842496 original size:21 final size:20
Alignment explanation
Indices: 15842472--15842541 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
15842462 ACTTAAAAAA
15842472 TTAAAAACAAATCTC-AAAATT
1 TTAAAAA-AAATC-CAAAAATT
15842493 TTAATAAAAAATCCAAAAATT
1 TTAA-AAAAAATCCAAAAATT
* * * *
15842514 TTCAAAAAATTCTAAAAGTT
1 TTAAAAAAAATCCAAAAATT
*
15842534 TCAAAAAA
1 TTAAAAAA
15842542 TGAAATTTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
20 20 0.49
21 18 0.44
22 3 0.07
ACGTcount: A:0.59, C:0.11, G:0.01, T:0.29
Consensus pattern (20 bp):
TTAAAAAAAATCCAAAAATT
Found at i:15842521 original size:20 final size:20
Alignment explanation
Indices: 15842487--15842541 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
15842477 AACAAATCTC
*
15842487 AAAATTTTAATAAAAAATCCA
1 AAAATTTTCA-AAAAAATCCA
* *
15842508 AAAATTTTC-AAAAAATTCT
1 AAAATTTTCAAAAAAATCCA
*
15842527 AAAAGTTTCAAAAAA
1 AAAATTTTCAAAAAA
15842542 TGAAATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 16 0.55
20 5 0.17
21 8 0.28
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAATTTTCAAAAAAATCCA
Found at i:15842522 original size:19 final size:19
Alignment explanation
Indices: 15842498--15842542 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
15842488 AAATTTTAAT
*
15842498 AAAAAATCCAAAAATTTTC
1 AAAAAATCCAAAAAGTTTC
* *
15842517 AAAAAATTCTAAAAGTTTC
1 AAAAAATCCAAAAAGTTTC
15842536 AAAAAAT
1 AAAAAAT
15842543 GAAATTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.60, C:0.11, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAAATCCAAAAAGTTTC
Found at i:15842608 original size:21 final size:21
Alignment explanation
Indices: 15842567--15842605 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
15842557 AATAAAATTT
15842567 CTTTAAAAAGATTCAAAATAA
1 CTTTAAAAAGATTCAAAATAA
15842588 CTTT-AAAA-ATTCAAAATA
1 CTTTAAAAAGATTCAAAATA
15842606 TAAAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
20 4 0.22
21 4 0.22
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.31
Consensus pattern (21 bp):
CTTTAAAAAGATTCAAAATAA
Found at i:15842647 original size:19 final size:19
Alignment explanation
Indices: 15842625--15842671 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
15842615 AAATTTTTTG
*
15842625 AAAAAATTTAAAAATGTTA
1 AAAAAATTTAAAAAAGTTA
** *
15842644 AAAAAATAAAAAAAAGTTC
1 AAAAAATTTAAAAAAGTTA
15842663 AAAAAATTT
1 AAAAAATTT
15842672 TCATTTTTTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (19 bp):
AAAAAATTTAAAAAAGTTA
Found at i:15842719 original size:19 final size:20
Alignment explanation
Indices: 15842695--15842739 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
15842685 TTAAAATTAT
*
15842695 AATTTTCA-TATATTTTTGA
1 AATTTTCAGAATATTTTTGA
*
15842714 AATTTTCAGAATTTTTTTGA
1 AATTTTCAGAATATTTTTGA
15842734 AATTTT
1 AATTTT
15842740 TTAGATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (20 bp):
AATTTTCAGAATATTTTTGA
Found at i:15845556 original size:24 final size:24
Alignment explanation
Indices: 15845502--15845557 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
15845492 ATCACCATCT
* *
15845502 TCATTGTCACCATTTTCTTCCTTA
1 TCATTTTCACCATTTTCTTCCTCA
* *
15845526 CCCTTTTCACCATCTTTC-TCCTCA
1 TCATTTTCACCAT-TTTCTTCCTCA
15845550 TCATTTTC
1 TCATTTTC
15845558 TTCATTTCCA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.14, C:0.36, G:0.02, T:0.48
Consensus pattern (24 bp):
TCATTTTCACCATTTTCTTCCTCA
Found at i:15846254 original size:3 final size:3
Alignment explanation
Indices: 15846246--15846270 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15846236 CACTACATGA
15846246 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
15846271 GAAATCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:15850751 original size:22 final size:22
Alignment explanation
Indices: 15850716--15850757 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
15850706 TTTTTGTCTT
* *
15850716 TAATTTTAGGGATACAAATACC
1 TAATTCTAGAGATACAAATACC
15850738 TAATTCTAGAGATACAAATA
1 TAATTCTAGAGATACAAATA
15850758 TAAATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (22 bp):
TAATTCTAGAGATACAAATACC
Found at i:15851381 original size:135 final size:136
Alignment explanation
Indices: 15851118--15851371 Score: 368
Period size: 136 Copynumber: 1.9 Consensus size: 136
15851108 CCAATTTTCC
* * **
15851118 CTTCTACAATTTTCATTGTCATCACTTTTGGAACCACCAAAGATTTCAAGCAAAGGTGGAGAATT
1 CTTCTACAATTGTCATTGTCATCACTTTCGGAACCACCAAAGATTTCAAGCAAAGGAAGAGAATT
* * *
15851183 GTTTGTGGATGGCTTTGAAAATTAAGTTGGCTCAAGTGCTGCGTTAGCATTTTCATATTTTCCTC
66 GTTTGTGGATGGCTTTGAAAATTAAGTTAGCTCAAGTGCTGCCTCAGCATTTTCATATTTTCCTC
15851248 ACCTTT
131 ACCTTT
* ** * *
15851254 CTTCTACGATTGTCATTGTCATTGCTTTCGGAACCACCAAAGATTTCACAG-GAAGGAAGAGACT
1 CTTCTACAATTGTCATTGTCATCACTTTCGGAACCACCAAAGATTTCA-AGCAAAGGAAGAGAAT
*
15851318 TG-TTGTGGATGGCTTTGAAAATTAAGTTAGCTCAAGTGCTGCCTCATCATTTTC
65 TGTTTGTGGATGGCTTTGAAAATTAAGTTAGCTCAAGTGCTGCCTCAGCATTTTC
15851372 TCTTTTTCCT
Statistics
Matches: 104, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
135 48 0.46
136 54 0.52
137 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (136 bp):
CTTCTACAATTGTCATTGTCATCACTTTCGGAACCACCAAAGATTTCAAGCAAAGGAAGAGAATT
GTTTGTGGATGGCTTTGAAAATTAAGTTAGCTCAAGTGCTGCCTCAGCATTTTCATATTTTCCTC
ACCTTT
Found at i:15855512 original size:20 final size:20
Alignment explanation
Indices: 15855489--15855528 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
15855479 CCCCACTCCA
15855489 ACAATTCTCCTT-TCACTTTT
1 ACAATTCT-CTTCTCACTTTT
15855509 ACAATTCTCTTCTCACTTTT
1 ACAATTCTCTTCTCACTTTT
15855529 TAAAATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.20, C:0.30, G:0.00, T:0.50
Consensus pattern (20 bp):
ACAATTCTCTTCTCACTTTT
Found at i:15855535 original size:21 final size:20
Alignment explanation
Indices: 15855491--15855535 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
15855481 CCACTCCAAC
*
15855491 AATTCTCCTTTCACTTTTAC
1 AATTCTCCTTTCACTTTTAA
15855511 AATTCT-CTTCTCACTTTTTAA
1 AATTCTCCTT-TCAC-TTTTAA
15855532 AATT
1 AATT
15855536 TTTCAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 3 0.14
20 10 0.45
21 9 0.41
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (20 bp):
AATTCTCCTTTCACTTTTAA
Found at i:15855748 original size:25 final size:26
Alignment explanation
Indices: 15855696--15855751 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
15855686 AAATAATAAT
* *
15855696 AAAAATTATTGTAACTGTAATTAAAA
1 AAAAATTACTGTAACTATAATTAAAA
* *
15855722 AAAAATTACTGTAATTATAATTGAAA
1 AAAAATTACTGTAACTATAATTAAAA
15855748 AAAA
1 AAAA
15855752 TTTAATGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.32
Consensus pattern (26 bp):
AAAAATTACTGTAACTATAATTAAAA
Found at i:15857671 original size:37 final size:37
Alignment explanation
Indices: 15857621--15857700 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
15857611 TCTGAAACCA
* * *
15857621 ATTTTATGTGTAATAATATTAAGTAAATG-TATTTTAG
1 ATTTTATATGTAATAATATTAAATAAA-GATATTTTAC
15857658 ATTTTATATGTAATAATATTAAATAAAGATATTTTAC
1 ATTTTATATGTAATAATATTAAATAAAGATATTTTAC
15857695 ATTTTA
1 ATTTTA
15857701 GTTTTTCATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 38 0.97
ACGTcount: A:0.41, C:0.01, G:0.09, T:0.49
Consensus pattern (37 bp):
ATTTTATATGTAATAATATTAAATAAAGATATTTTAC
Found at i:15857816 original size:74 final size:73
Alignment explanation
Indices: 15857730--15857891 Score: 191
Period size: 74 Copynumber: 2.2 Consensus size: 73
15857720 AAGATATACA
* * * * * *
15857730 TTTTTATTTTAGAAACATCGTTTTTTTTTTAATTTTGAAAAATATA-TTTTTCATGTTTTCAATA
1 TTTTTATCTTAGAAACATCG-TCTCTATTGAATTTTGAAAAATATATTTTTTCATGTTTTCAACA
*
15857794 AAAACTATT
65 AAAACTATG
* * *
15857803 TTTTCTATCTTAGAAACATTGTCTCTATTGAATTTTGAAATATATATTTTTTTATGTTTTCAACA
1 TTTT-TATCTTAGAAACATCGTCTCTATTGAATTTTGAAAAATATATTTTTTCATGTTTTCAACA
* *
15857868 AAGATTATG
65 AAAACTATG
15857877 TTTTTATCTTAGAAA
1 TTTTTATCTTAGAAA
15857892 GGTAGTCTTT
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
73 35 0.47
74 40 0.53
ACGTcount: A:0.32, C:0.08, G:0.07, T:0.52
Consensus pattern (73 bp):
TTTTTATCTTAGAAACATCGTCTCTATTGAATTTTGAAAAATATATTTTTTCATGTTTTCAACAA
AAACTATG
Found at i:15860941 original size:313 final size:313
Alignment explanation
Indices: 15860354--15860953 Score: 824
Period size: 313 Copynumber: 1.9 Consensus size: 313
15860344 AAAATCATTG
* * * *
15860354 TTTTTATTATAATTAATTTTTAATAATTTATTATAATATATAACTATGTTTATAATATAACAACA
1 TTTTTATTATAATTAAATTTTAATAATATATTATAACATATAACTATGTTTATAAAATAACAACA
* ** **
15860419 TTGTAGAAATTAAAATTTTTTATTTATTAGGATTTTAGTTTATATGTTTTTCAACTATATTTATA
66 TTGTAGAAATGAAAATTTTTTATTTATTAAAATTTTAGTTTATACATTTTTCAACTATATTTATA
* * * * ** *
15860484 ATTAAAAAACATTGTTTTTTTGAAATTTTATTAGTCGAAAACAAATATTTGAATTATAAAAAATT
131 ATTAAAAAACATTATCTTTCTGAAATTTTATTAATAAAAAACAAATATTTAAATTATAAAAAATT
* * *
15860549 CAAATACACATGATTACTATCAAGTGTCCAATCATGTAAATAAAAATGTAGTTTTGCCTTATTAT
196 CAAATACACATGATTACTATCAAGTGTCCAATCATGTAAATAAAAATGTAATTTTACCTAATTAT
* *
15860614 ATGGCTAGGAATGTAGCTTTGCATGTCAAAATAGGTATTGATTTATCATCCAA
261 ATGACTAAGAATGTAGCTTTGCATGTCAAAATAGGTATTGATTTATCATCCAA
* *
15860667 TTTTTATTATAATTAAATTTTAATAATATATTATAACATATAATTATGTTTATAAAATAACAACG
1 TTTTTATTATAATTAAATTTTAATAATATATTATAACATATAACTATGTTTATAAAATAACAACA
* * *
15860732 TTGTATAAATGAAAATTTTTTATTTATTAAAATTTTATTTTATACATTTTTCAACTATGTTTATA
66 TTGTAGAAATGAAAATTTTTTATTTATTAAAATTTTAGTTTATACATTTTTCAACTATATTTATA
* *
15860797 ATTAAAAACATATTATCTTTCTGAAATTTTATTAATAAAAAACAAATATTTAAATT-TATAAAAT
131 ATTAAAAA-ACATTATCTTTCTGAAATTTTATTAATAAAAAACAAATATTTAAATTATAAAAAAT
* * * * * ** * *
15860861 TTAAATACACATGATTATTGTCAGGTGTCTAATCATGTAGTTAGAAATGTAATTTTATCTAATTA
195 TCAAATACACATGATTACTATCAAGTGTCCAATCATGTAAATAAAAATGTAATTTTACCTAATTA
* * *
15860926 TGTGATTAAGAATGTAGCTTTGTATGTC
260 TATGACTAAGAATGTAGCTTTGCATGTC
15860954 TGAATATTTT
Statistics
Matches: 246, Mismatches: 40, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
313 207 0.84
314 39 0.16
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.45
Consensus pattern (313 bp):
TTTTTATTATAATTAAATTTTAATAATATATTATAACATATAACTATGTTTATAAAATAACAACA
TTGTAGAAATGAAAATTTTTTATTTATTAAAATTTTAGTTTATACATTTTTCAACTATATTTATA
ATTAAAAAACATTATCTTTCTGAAATTTTATTAATAAAAAACAAATATTTAAATTATAAAAAATT
CAAATACACATGATTACTATCAAGTGTCCAATCATGTAAATAAAAATGTAATTTTACCTAATTAT
ATGACTAAGAATGTAGCTTTGCATGTCAAAATAGGTATTGATTTATCATCCAA
Found at i:15862085 original size:20 final size:20
Alignment explanation
Indices: 15862060--15862102 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
15862050 GAGAAAAAAA
15862060 ATACATTTACTGCTATATAT
1 ATACATTTACTGCTATATAT
15862080 ATACATTTACTGCTATATAT
1 ATACATTTACTGCTATATAT
15862100 ATA
1 ATA
15862103 TATTGTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.14, G:0.05, T:0.44
Consensus pattern (20 bp):
ATACATTTACTGCTATATAT
Found at i:15864132 original size:15 final size:15
Alignment explanation
Indices: 15864099--15864144 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
15864089 AAATTCATAA
* *
15864099 AAGAAATAC-ATAGC
1 AAGAAATACAACAAC
15864113 AAGAAATACAACAAC
1 AAGAAATACAACAAC
15864128 AAGAACA-ACAACAAC
1 AAGAA-ATACAACAAC
15864143 AA
1 AA
15864145 ATTAAGCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 9 0.32
15 18 0.64
16 1 0.04
ACGTcount: A:0.65, C:0.20, G:0.09, T:0.07
Consensus pattern (15 bp):
AAGAAATACAACAAC
Found at i:15866282 original size:135 final size:136
Alignment explanation
Indices: 15866020--15866272 Score: 366
Period size: 136 Copynumber: 1.9 Consensus size: 136
15866010 TTTTCCCTTC
** * **
15866020 TTCTACAATTTTCATTGTCATCACTTTTGGAACCACCAAAGATTTCAAGCAAAGGTGGAGAATTG
1 TTCTACAATTGCCATTGTCATCACTTTCGGAACCACCAAAGATTTCAAGCAAAGGAAGAGAATTG
* * *
15866085 TTTGTGGATGGCTTTGAAAATTAAGTTGGCTCAAGTGCTGCGTTAGCATTTTCATATTTTCCTCA
66 TTTGTGGATGGCTTTGAAAATTAAGTTAGCTCAAGTGCTGCCTCAGCATTTTCATATTTTCCTCA
15866150 CCTTTT
131 CCTTTT
** * *
15866156 TTCTACAATTGCCATTGTCATTGCTTTCGGAACCACCAAAGATTTCACAG-GAAGGAAGAGACTT
1 TTCTACAATTGCCATTGTCATCACTTTCGGAACCACCAAAGATTTCA-AGCAAAGGAAGAGAATT
*
15866220 G-TTGTGGATGGCTTTGAAAATTAAGTTAGCTCAAGTGCTGCCTCATCATTTTC
65 GTTTGTGGATGGCTTTGAAAATTAAGTTAGCTCAAGTGCTGCCTCAGCATTTTC
15866273 TCTTTTTCCT
Statistics
Matches: 103, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
135 48 0.47
136 53 0.51
137 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (136 bp):
TTCTACAATTGCCATTGTCATCACTTTCGGAACCACCAAAGATTTCAAGCAAAGGAAGAGAATTG
TTTGTGGATGGCTTTGAAAATTAAGTTAGCTCAAGTGCTGCCTCAGCATTTTCATATTTTCCTCA
CCTTTT
Found at i:15868982 original size:2 final size:2
Alignment explanation
Indices: 15868970--15869003 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
15868960 AAGTTAAGAA
15868970 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15869004 GATTATGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:15870789 original size:26 final size:25
Alignment explanation
Indices: 15870743--15870806 Score: 67
Period size: 26 Copynumber: 2.6 Consensus size: 25
15870733 GAGATTTAAA
* *
15870743 ATAA-TAATAAAAAATATTGTAACT
1 ATAATTAAAAAAAAATACTGTAACT
* *
15870767 GTAATTAAAAAAAAATTACTGTAATT
1 ATAATTAAAAAAAAA-TACTGTAACT
*
15870793 ATAATTGAAAAAAA
1 ATAATTAAAAAAAA
15870807 TTTAATGAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
24 3 0.09
25 9 0.28
26 20 0.62
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.31
Consensus pattern (25 bp):
ATAATTAAAAAAAAATACTGTAACT
Found at i:15872734 original size:34 final size:37
Alignment explanation
Indices: 15872668--15872742 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
15872658 CCGAAACCAA
* * *
15872668 TTTATGTGTAATAATATTAAGTAAATGTATTTTAGAT
1 TTTATATGTAATAATATTAAGTAAATGAATTTTACAT
15872705 TTTATATGTAATAATATTAA-T-AA-GAATTTTACAT
1 TTTATATGTAATAATATTAAGTAAATGAATTTTACAT
15872739 TTTA
1 TTTA
15872743 GTTTTTCATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
34 13 0.37
35 2 0.06
36 1 0.03
37 19 0.54
ACGTcount: A:0.40, C:0.01, G:0.09, T:0.49
Consensus pattern (37 bp):
TTTATATGTAATAATATTAAGTAAATGAATTTTACAT
Found at i:15873339 original size:74 final size:73
Alignment explanation
Indices: 15873138--15873344 Score: 229
Period size: 74 Copynumber: 2.8 Consensus size: 73
15873128 CTTAGAATCG
* * * *
15873138 TCATATTTTCAACAAAAAATGCATTTTCTATCTTAAAAACGTTGTTTGTATTAAATTCTAGAAAA
1 TCATATTTTCAACAAAAATTGCATTTTCTATCTTAAAAACGTCGTTTTTATTGAATTCTAGAAAA
15873203 TAATTTTT
66 TAATTTTT
* ** * * * * *
15873211 T-ATGTTTTCAACAAAAATTATATTTTTTTATTTTAAAAATGTCGTCTTTATTGAATT-TTGTAA
1 TCATATTTTCAACAAAAATTGCA-TTTTCTATCTTAAAAACGTCGTTTTTATTGAATTCTAG-AA
15873274 AATAAATTTTT
64 AAT-AATTTTT
* * * *
15873285 TCATATTTTTAATAAAAATTGCATTTTCTATCTTAGAAACGTCATTTTTATTGAATTCTA
1 TCATATTTTCAACAAAAATTGCATTTTCTATCTTAAAAACGTCGTTTTTATTGAATTCTA
15873345 AAACGATTAA
Statistics
Matches: 105, Mismatches: 24, Indels: 8
0.77 0.18 0.06
Matches are distributed among these distances:
72 19 0.18
73 33 0.31
74 36 0.34
75 17 0.16
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (73 bp):
TCATATTTTCAACAAAAATTGCATTTTCTATCTTAAAAACGTCGTTTTTATTGAATTCTAGAAAA
TAATTTTT
Found at i:15874666 original size:40 final size:40
Alignment explanation
Indices: 15874605--15874682 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
15874595 TATTTTCATA
15874605 TTTTTAACAAACATTGAATTTT-TATCTTAGAAAACATTGT
1 TTTTTAACAAACATTGAATTTTCTATCTTA-AAAACATTGT
* * *
15874645 TTTTTAGCAAAGATTGCATTTTCTATCTTAAAAACATT
1 TTTTTAACAAACATTGAATTTTCTATCTTAAAAACATT
15874683 ATCTTTGTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 27 0.79
41 7 0.21
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.45
Consensus pattern (40 bp):
TTTTTAACAAACATTGAATTTTCTATCTTAAAAACATTGT
Found at i:15874769 original size:74 final size:73
Alignment explanation
Indices: 15874644--15874834 Score: 181
Period size: 74 Copynumber: 2.6 Consensus size: 73
15874634 GAAAACATTG
* * * * *
15874644 TTTTTT-AGCAAAGATTGCATTTTCTATCTTAAAAACATTATCTTTGTTGAATTTTAAAAAATAT
1 TTTTTTCAACAAAGACTGCATTTTCTATCTTAAAAACATTATCTTTATTGAATTCTAAAAAACAT
* *
15874708 TTTTTTTA
66 ATTTTTCA
* * * *
15874716 TTTTTTCAACAAAGACTGCATGTTTTTATCTTAAAAGC-TTCATTTTTATTGAATTCTGAAAAAC
1 TTTTTTCAACAAAGACTGCAT-TTTCTATCTTAAAAACATT-ATCTTTATTGAATTCTAAAAAAC
15874780 ATATTTTTCA
64 ATATTTTTCA
* * ** * * *
15874790 TGTTTTCAACAAAAACTTTATTTT-TATCTTACATACATCATCTTT
1 TTTTTTCAACAAAGACTGCATTTTCTATCTTAAAAACATTATCTTT
15874835 TAAACAAAGA
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
72 20 0.21
73 18 0.19
74 57 0.60
ACGTcount: A:0.32, C:0.13, G:0.06, T:0.49
Consensus pattern (73 bp):
TTTTTTCAACAAAGACTGCATTTTCTATCTTAAAAACATTATCTTTATTGAATTCTAAAAAACAT
ATTTTTCA
Found at i:15875777 original size:17 final size:18
Alignment explanation
Indices: 15875757--15875791 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
15875747 ATTATAACAT
*
15875757 ATAACTACGTT-TATAAA
1 ATAACAACGTTGTATAAA
15875774 ATAACAACGTTGTATAAA
1 ATAACAACGTTGTATAAA
15875792 TGAAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (18 bp):
ATAACAACGTTGTATAAA
Found at i:15877133 original size:20 final size:20
Alignment explanation
Indices: 15877108--15877148 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
15877098 AAAAAAAAAA
*
15877108 ACATTTACTACTGTATATAT
1 ACATTTACTACTATATATAT
15877128 ACATTTACTACTATATATAT
1 ACATTTACTACTATATATAT
15877148 A
1 A
15877149 TATATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.15, G:0.02, T:0.44
Consensus pattern (20 bp):
ACATTTACTACTATATATAT
Found at i:15877144 original size:2 final size:2
Alignment explanation
Indices: 15877139--15877163 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15877129 CATTTACTAC
15877139 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
15877164 TGTCATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15882612 original size:28 final size:28
Alignment explanation
Indices: 15882554--15882612 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
15882544 ATTATAAAAA
* * * * *
15882554 AAAATGTTTAATGTGATATTTGAATTTT
1 AAAATATTTAATATGATACTTGAACTAT
*
15882582 AAAATATTTAATATGCTACTTGAACTAT
1 AAAATATTTAATATGATACTTGAACTAT
15882610 AAA
1 AAA
15882613 TTTGTAATTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.42
Consensus pattern (28 bp):
AAAATATTTAATATGATACTTGAACTAT
Found at i:15882893 original size:21 final size:21
Alignment explanation
Indices: 15882869--15882958 Score: 90
Period size: 21 Copynumber: 4.2 Consensus size: 21
15882859 TAGAGAGGTA
*
15882869 ATTTGCAAAATGGATTGATCC
1 ATTTGCAAAATGGATCGATCC
** * *
15882890 ATTTTTAAAAAAGGGATCGATCT
1 A--TTTGCAAAATGGATCGATCC
* *
15882913 ATTTGCAAAATAGATCAATCC
1 ATTTGCAAAATGGATCGATCC
*
15882934 ATTTGCAAAAAGGATCGATCC
1 ATTTGCAAAATGGATCGATCC
15882955 ATTT
1 ATTT
15882959 ATGAAAAATC
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
21 37 0.70
23 16 0.30
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (21 bp):
ATTTGCAAAATGGATCGATCC
Found at i:15882919 original size:44 final size:42
Alignment explanation
Indices: 15882869--15882958 Score: 108
Period size: 44 Copynumber: 2.1 Consensus size: 42
15882859 TAGAGAGGTA
* ** * *
15882869 ATTTGCAAAATGGATTGATCCATTTTTAAAAAAGGGATCGATCT
1 ATTTGCAAAATAGATCAATCCA-TTTGAAAAAA-GGATCGATCC
*
15882913 ATTTGCAAAATAGATCAATCCATTTGCAAAAAGGATCGATCC
1 ATTTGCAAAATAGATCAATCCATTTGAAAAAAGGATCGATCC
15882955 ATTT
1 ATTT
15882959 ATGAAAAATC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
42 13 0.32
43 8 0.20
44 19 0.47
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (42 bp):
ATTTGCAAAATAGATCAATCCATTTGAAAAAAGGATCGATCC
Found at i:15884099 original size:7 final size:7
Alignment explanation
Indices: 15884089--15884116 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
15884079 TAATTAATAA
15884089 AATTATT
1 AATTATT
15884096 AATTATT
1 AATTATT
15884103 AATTATT
1 AATTATT
15884110 AATTATT
1 AATTATT
15884117 CATGTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AATTATT
Found at i:15886397 original size:12 final size:11
Alignment explanation
Indices: 15886371--15886418 Score: 51
Period size: 12 Copynumber: 4.1 Consensus size: 11
15886361 GTCAACTCAC
*
15886371 TTTTTTTTTGCA
1 TTTTTTTTT-AA
15886383 TTTTCTTTTTAA
1 TTTT-TTTTTAA
*
15886395 TTTTTTTTCAA
1 TTTTTTTTTAA
15886406 TTTTTTGTTTAA
1 TTTTTT-TTTAA
15886418 T
1 T
15886419 AAATATTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
11 12 0.39
12 14 0.45
13 5 0.16
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (11 bp):
TTTTTTTTTAA
Found at i:15886402 original size:23 final size:23
Alignment explanation
Indices: 15886372--15886418 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
15886362 TCAACTCACT
15886372 TTTTTTTTGC-ATTTTCTT-TTTAA
1 TTTTTTTT-CAATTTT-TTGTTTAA
15886395 TTTTTTTTCAATTTTTTGTTTAA
1 TTTTTTTTCAATTTTTTGTTTAA
15886418 T
1 T
15886419 AAATATTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 3 0.14
23 19 0.86
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.74
Consensus pattern (23 bp):
TTTTTTTTCAATTTTTTGTTTAA
Found at i:15886688 original size:20 final size:21
Alignment explanation
Indices: 15886652--15886694 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
15886642 AACTTTCCTT
*
15886652 TTTTTGTTGTTCATCTTTTTC
1 TTTTTGTTGTTCATCTTTCTC
15886673 TTTTTGTT-TT-AGTCTTTCTC
1 TTTTTGTTGTTCA-TCTTTCTC
15886693 TT
1 TT
15886695 CTTTTCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 11 0.55
21 8 0.40
ACGTcount: A:0.05, C:0.14, G:0.09, T:0.72
Consensus pattern (21 bp):
TTTTTGTTGTTCATCTTTCTC
Found at i:15886987 original size:21 final size:20
Alignment explanation
Indices: 15886954--15886992 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
15886944 AATTGGCTCT
15886954 AAAAATTTAAAATATAAACA
1 AAAAATTTAAAATATAAACA
*
15886974 AAAAATTATTAAATATAAA
1 AAAAATT-TAAAATATAAA
15886993 AGAGAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAAATTTAAAATATAAACA
Found at i:15887713 original size:21 final size:19
Alignment explanation
Indices: 15887676--15887716 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
15887666 ATGTTTTTTT
*
15887676 TTTTTTACTTTTTTTTAAA
1 TTTTTTAATTTTTTTTAAA
15887695 TTTTTTAATTATTTATTTAAA
1 TTTTTTAATT-TTT-TTTAAA
15887716 T
1 T
15887717 AAATTTTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
20 3 0.16
21 7 0.37
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTTTAATTTTTTTTAAA
Found at i:15890317 original size:12 final size:12
Alignment explanation
Indices: 15890300--15890328 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15890290 AACTTTTACT
15890300 TATTACCAAACA
1 TATTACCAAACA
15890312 TATTACCAAACA
1 TATTACCAAACA
15890324 -ATTAC
1 TATTAC
15890329 TGTTTACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (12 bp):
TATTACCAAACA
Found at i:15891068 original size:20 final size:20
Alignment explanation
Indices: 15891043--15891082 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
15891033 TTCAAGCAAA
* *
15891043 TTCTTTCATCAATTTTCATC
1 TTCTTTAATCAATTGTCATC
*
15891063 TTCTTTAATCCATTGTCATC
1 TTCTTTAATCAATTGTCATC
15891083 ATATTTGTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.20, C:0.25, G:0.03, T:0.53
Consensus pattern (20 bp):
TTCTTTAATCAATTGTCATC
Found at i:15891649 original size:35 final size:35
Alignment explanation
Indices: 15891603--15891673 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
15891593 TAACAATTAC
*
15891603 ATAGAGCTTCTTCTATACTTTGTTATGACTGCTCT
1 ATAGAGCTTCTTCTATACTTTGCTATGACTGCTCT
15891638 ATAGAGCTTCTTCTATACTTTGCTATGACTGCTCT
1 ATAGAGCTTCTTCTATACTTTGCTATGACTGCTCT
15891673 A
1 A
15891674 CAACCAAGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.44
Consensus pattern (35 bp):
ATAGAGCTTCTTCTATACTTTGCTATGACTGCTCT
Found at i:15898581 original size:22 final size:22
Alignment explanation
Indices: 15898555--15898598 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
15898545 TGTATATTTA
*
15898555 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
15898577 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
15898599 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:15900150 original size:22 final size:22
Alignment explanation
Indices: 15900124--15900167 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
15900114 TGTGTATTTA
*
15900124 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
15900146 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
15900168 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:15902450 original size:2 final size:2
Alignment explanation
Indices: 15902443--15902476 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
15902433 TAGTAAAATG
15902443 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15902477 GAGAGAGAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15902481 original size:2 final size:2
Alignment explanation
Indices: 15902476--15902503 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15902466 ATATATATAT
15902476 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
15902504 CAATTAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:15907105 original size:15 final size:15
Alignment explanation
Indices: 15907077--15907111 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
15907067 AGTATAAAAA
*
15907077 TTCAGTACTAAATTT
1 TTCAGCACTAAATTT
*
15907092 TTCAGCACTTAATTT
1 TTCAGCACTAAATTT
15907107 TTCAG
1 TTCAG
15907112 TTTATCCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.09, T:0.46
Consensus pattern (15 bp):
TTCAGCACTAAATTT
Found at i:15914894 original size:9 final size:9
Alignment explanation
Indices: 15914861--15914941 Score: 72
Period size: 10 Copynumber: 8.4 Consensus size: 9
15914851 CATATCAATT
15914861 TTTTAACAAA
1 TTTTAA-AAA
15914871 TTTTAATAAA
1 TTTTAA-AAA
*
15914881 TTTTTTAAAA
1 -TTTTAAAAA
15914891 TTTTAAAAAA
1 TTTT-AAAAA
* **
15914901 TTATAAATT
1 TTTTAAAAA
15914910 TTTTAAAAA
1 TTTTAAAAA
*
15914919 TTCTAAAAA
1 TTTTAAAAA
15914928 TTTTAAAAAA
1 TTTT-AAAAA
15914938 TTTT
1 TTTT
15914942 TAGAATATTC
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
9 24 0.42
10 28 0.49
11 5 0.09
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.48
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:15914912 original size:18 final size:18
Alignment explanation
Indices: 15914886--15914939 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
15914876 ATAAATTTTT
15914886 TAAAATTTTAAAAAATTA
1 TAAAATTTTAAAAAATTA
* * *
15914904 TAAATTTTTTAAAAATTC
1 TAAAATTTTAAAAAATTA
15914922 TAAAAATTTTAAAAAATT
1 T-AAAATTTTAAAAAATT
15914940 TTTAGAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 16 0.53
19 14 0.47
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (18 bp):
TAAAATTTTAAAAAATTA
Found at i:15914915 original size:19 final size:19
Alignment explanation
Indices: 15914868--15914939 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
15914858 ATTTTTTAAC
* * *
15914868 AAATTTTAATAAATTTTTTA
1 AAATTTTAA-AAAATTATAA
15914888 AAATTTTAAAAAATTAT-A
1 AAATTTTAAAAAATTATAA
* * *
15914906 AATTTTTTAAAAATTCTAA
1 AAATTTTAAAAAATTATAA
15914925 AAATTTTAAAAAATT
1 AAATTTTAAAAAATT
15914940 TTTAGAATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
18 15 0.34
19 20 0.45
20 9 0.20
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATTTTAAAAAATTATAA
Found at i:15915063 original size:20 final size:20
Alignment explanation
Indices: 15915048--15915105 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
15915038 AGTAAAAATT
15915048 TCTTTAAAATTTTAAAAAAA
1 TCTTTAAAATTTTAAAAAAA
15915068 T-TTTAAACATTTTCAAAAAAA
1 TCTTTAAA-ATTTT-AAAAAAA
*
15915089 TC-TCAAAATTTTAAAAA
1 TCTTTAAAATTTTAAAAA
15915106 TAATTCAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
19 11 0.32
20 11 0.32
21 12 0.35
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (20 bp):
TCTTTAAAATTTTAAAAAAA
Found at i:15915072 original size:19 final size:19
Alignment explanation
Indices: 15915053--15915119 Score: 82
Period size: 19 Copynumber: 3.4 Consensus size: 19
15915043 AAATTTCTTT
*
15915053 AAAATTTTAAAAAAATTTT
1 AAAATTTTAAAAAAATTTC
*
15915072 AAACATTTTCAAAAAAATCTC
1 AAA-ATTTT-AAAAAAATTTC
15915093 AAAATTTTAAAAATAA-TTC
1 AAAATTTTAAAAA-AATTTC
15915112 AAAATTTT
1 AAAATTTT
15915120 TCAACAATTC
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
19 18 0.43
20 12 0.29
21 12 0.29
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATTTTAAAAAAATTTC
Found at i:15915120 original size:20 final size:18
Alignment explanation
Indices: 15915053--15915133 Score: 81
Period size: 19 Copynumber: 4.2 Consensus size: 18
15915043 AAATTTCTTT
*
15915053 AAAATTTTAAAAAAATTTT
1 AAAATTTTAAAAAAA-TTC
15915072 AAACATTTTCAAAAAAATCTC
1 AAA-ATTTT-AAAAAAAT-TC
15915093 AAAATTTTAAAAATAATTC
1 AAAATTTTAAAAA-AATTC
** *
15915112 AAAATTTTTCAACAATTC
1 AAAATTTTAAAAAAATTC
15915130 AAAA
1 AAAA
15915134 AATGATGATT
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
18 9 0.17
19 20 0.37
20 14 0.26
21 11 0.20
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAATTTTAAAAAAATTC
Found at i:15915206 original size:20 final size:20
Alignment explanation
Indices: 15915181--15915218 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15915171 AAGAAAATTT
15915181 TTTAAAAAAAATATAAAAAG
1 TTTAAAAAAAATATAAAAAG
* *
15915201 TTTAAAAATAATGTAAAA
1 TTTAAAAAAAATATAAAA
15915219 TTTTTTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
TTTAAAAAAAATATAAAAAG
Found at i:15915445 original size:21 final size:21
Alignment explanation
Indices: 15915405--15915445 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15915395 TTTCAAAAAA
*
15915405 TTTTAAAAACTTTTAAATTTT
1 TTTTAAAAACTTTCAAATTTT
* *
15915426 TTTTAAAAGCTTTCATATTT
1 TTTTAAAAACTTTCAAATTT
15915446 GTTCAAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTTAAAAACTTTCAAATTTT
Found at i:15915655 original size:26 final size:25
Alignment explanation
Indices: 15915626--15915688 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 25
15915616 TTTTGTGAAA
15915626 TTTTAAAATTATCATATTTTATAATT
1 TTTTAAAATTATCATATTTTA-AATT
* * *
15915652 TTTTCAAAATATTTCTTTTTTTAAATT
1 TTTT-AAAAT-TATCATATTTTAAATT
*
15915679 GTTTAAAATT
1 TTTTAAAATT
15915689 TTTTTAGAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
25 1 0.03
26 9 0.29
27 12 0.39
28 9 0.29
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.59
Consensus pattern (25 bp):
TTTTAAAATTATCATATTTTAAATT
Found at i:15915704 original size:21 final size:20
Alignment explanation
Indices: 15915667--15915707 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
15915657 AAAATATTTC
15915667 TTTTTTTAAATTGTTTAAAA
1 TTTTTTTAAATTGTTTAAAA
*
15915687 TTTTTTTAGAA-TGTTTTAAA
1 TTTTTTTA-AATTGTTTAAAA
15915707 T
1 T
15915708 AGTTTTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (20 bp):
TTTTTTTAAATTGTTTAAAA
Found at i:15915771 original size:10 final size:10
Alignment explanation
Indices: 15915758--15915859 Score: 63
Period size: 9 Copynumber: 10.4 Consensus size: 10
15915748 TTTTTATAAA
15915758 TTTTAAAATT
1 TTTTAAAATT
15915768 TTTTAAAGAATT
1 TTTT-AA-AATT
* *
15915780 GTTTTGACA-T
1 -TTTTAAAATT
*
15915790 TTTTATAA-T
1 TTTTAAAATT
*
15915799 TTTTAAAACT
1 TTTTAAAATT
* *
15915809 TTTT-AGATG
1 TTTTAAAATT
*
15915818 TTTT-GAATT
1 TTTTAAAATT
15915827 TTTTGAAAA--
1 TTTT-AAAATT
15915836 TTTTAAAATT
1 TTTTAAAATT
15915846 TTTTAAAATT
1 TTTTAAAATT
15915856 TTTT
1 TTTT
15915860 CATAAAAGAT
Statistics
Matches: 71, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
8 4 0.06
9 29 0.41
10 24 0.34
11 5 0.07
12 5 0.07
13 4 0.06
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:15915947 original size:21 final size:20
Alignment explanation
Indices: 15915892--15915947 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
15915882 ATAATTTTTA
*
15915892 ATTTTAAAAATTTTTTAACAT
1 ATTTTTAAAA-TTTTTAACAT
*
15915913 ATTTTTAGAATTTTTAA-AT
1 ATTTTTAAAATTTTTAACAT
* *
15915932 TTGTTTTAAAACTTTT
1 AT-TTTTAAAATTTTT
15915948 CATGCTAACG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 3 0.10
20 18 0.62
21 8 0.28
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.57
Consensus pattern (20 bp):
ATTTTTAAAATTTTTAACAT
Found at i:15923372 original size:49 final size:49
Alignment explanation
Indices: 15923313--15923423 Score: 213
Period size: 49 Copynumber: 2.3 Consensus size: 49
15923303 TGAAATGTTC
15923313 CTTGCATATGCTTGTGTGATTTTGTTTGAAATAAATATATGTTTGATTA
1 CTTGCATATGCTTGTGTGATTTTGTTTGAAATAAATATATGTTTGATTA
*
15923362 CTTGCATATGCTTGTGTGATTTTGTTTGCAATAAATATATGTTTGATTA
1 CTTGCATATGCTTGTGTGATTTTGTTTGAAATAAATATATGTTTGATTA
15923411 CTTGCATATGCTT
1 CTTGCATATGCTT
15923424 AGATTAAGTA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 61 1.00
ACGTcount: A:0.24, C:0.09, G:0.18, T:0.49
Consensus pattern (49 bp):
CTTGCATATGCTTGTGTGATTTTGTTTGAAATAAATATATGTTTGATTA
Found at i:15923409 original size:27 final size:27
Alignment explanation
Indices: 15923329--15923409 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 27
15923319 TATGCTTGTG
*
15923329 TGATTTTGTTTGAAATAAATATATGTT
1 TGATTTTGTTTGCAATAAATATATGTT
** * *
15923356 TGA--TTACTTGC-AT--ATGCT-TGTG
1 TGATTTTGTTTGCAATAAAT-ATATGTT
15923378 TGATTTTGTTTGCAATAAATATATGTT
1 TGATTTTGTTTGCAATAAATATATGTT
15923405 TGATT
1 TGATT
15923410 ACTTGCATAT
Statistics
Matches: 38, Mismatches: 9, Indels: 14
0.62 0.15 0.23
Matches are distributed among these distances:
22 8 0.21
23 1 0.03
24 8 0.21
25 7 0.18
26 1 0.03
27 13 0.34
ACGTcount: A:0.27, C:0.05, G:0.17, T:0.51
Consensus pattern (27 bp):
TGATTTTGTTTGCAATAAATATATGTT
Found at i:15926642 original size:23 final size:23
Alignment explanation
Indices: 15926590--15926659 Score: 104
Period size: 23 Copynumber: 2.9 Consensus size: 23
15926580 GGAGTGTGCC
*
15926590 AACTTGATGTATGAGTGTAGGTGTCA
1 AACTTGATCT-TGAGTGT-GG-GTCA
15926616 AACTTGATCTTGAGTGTGGGTCA
1 AACTTGATCTTGAGTGTGGGTCA
15926639 AACTTGATCTTGAGTGTGGGT
1 AACTTGATCTTGAGTGTGGGT
15926660 TTCAGGTTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
23 25 0.58
24 2 0.05
25 7 0.16
26 9 0.21
ACGTcount: A:0.23, C:0.10, G:0.31, T:0.36
Consensus pattern (23 bp):
AACTTGATCTTGAGTGTGGGTCA
Found at i:15928125 original size:13 final size:14
Alignment explanation
Indices: 15928107--15928136 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
15928097 GAAACTAGTC
15928107 AAAAAAGA-GAAAA
1 AAAAAAGAGGAAAA
15928120 AAAAAAGAGGAAAA
1 AAAAAAGAGGAAAA
15928134 AAA
1 AAA
15928137 GGATGTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAAGAGGAAAA
Found at i:15928935 original size:16 final size:16
Alignment explanation
Indices: 15928914--15928947 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
15928904 TAATACTCTC
*
15928914 TTGTTCATCACCCTTG
1 TTGTTCATCACCCATG
15928930 TTGTTCATCACCCATG
1 TTGTTCATCACCCATG
15928946 TT
1 TT
15928948 CTTCGATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.29, G:0.12, T:0.44
Consensus pattern (16 bp):
TTGTTCATCACCCATG
Found at i:15929815 original size:19 final size:19
Alignment explanation
Indices: 15929782--15929831 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
15929772 AAATCTAAAC
15929782 ATAAAA-CCTAGAACCCTAA
1 ATAAAATCCTA-AACCCTAA
* *
15929801 GTAAAATCCTAAACCTTAA
1 ATAAAATCCTAAACCCTAA
15929820 ATAAAATCCTAA
1 ATAAAATCCTAA
15929832 GTGAAACCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.52, C:0.22, G:0.04, T:0.22
Consensus pattern (19 bp):
ATAAAATCCTAAACCCTAA
Found at i:15939037 original size:8 final size:8
Alignment explanation
Indices: 15939024--15939102 Score: 54
Period size: 8 Copynumber: 9.2 Consensus size: 8
15939014 AAAAAAGGTG
15939024 AAGAAAAA
1 AAGAAAAA
15939032 AAGAAAAA
1 AAGAAAAA
15939040 AA-AAGGAAA
1 AAGAA--AAA
*
15939049 AAGTGAAAGA
1 AA--GAAAAA
*
15939059 AAGAATAA
1 AAGAAAAA
15939067 AAG-AAAA
1 AAGAAAAA
15939074 AAGAAAAA
1 AAGAAAAA
*
15939082 CAAAAAAAA
1 -AAGAAAAA
15939091 TAAGGAAAAA
1 -AA-GAAAAA
15939101 AA
1 AA
15939103 AAGAAATGAA
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
7 8 0.14
8 21 0.38
9 16 0.29
10 9 0.16
12 2 0.04
ACGTcount: A:0.80, C:0.01, G:0.15, T:0.04
Consensus pattern (8 bp):
AAGAAAAA
Found at i:15939048 original size:19 final size:20
Alignment explanation
Indices: 15939024--15939108 Score: 56
Period size: 19 Copynumber: 4.3 Consensus size: 20
15939014 AAAAAAGGTG
15939024 AAGAAAA-AAAGAAAAA-AA
1 AAGAAAAGAAAGAAAAACAA
*
15939042 AAGGAAAAAGTGAAAGAAAGAATAA
1 AA-G-AAAA--GAAAGAAA-AACAA
15939067 AAG-AAA-AAAGAAAAACAA
1 AAGAAAAGAAAGAAAAACAA
* *
15939085 AA-AAAATAAGGAAAAA-AA
1 AAGAAAAGAAAGAAAAACAA
15939103 AAGAAA
1 AAGAAA
15939109 TGAATGGGTG
Statistics
Matches: 55, Mismatches: 2, Indels: 19
0.72 0.03 0.25
Matches are distributed among these distances:
18 15 0.27
19 19 0.35
20 4 0.07
22 3 0.05
23 7 0.13
24 3 0.05
25 4 0.07
ACGTcount: A:0.80, C:0.01, G:0.15, T:0.04
Consensus pattern (20 bp):
AAGAAAAGAAAGAAAAACAA
Found at i:15939059 original size:31 final size:32
Alignment explanation
Indices: 15939015--15939105 Score: 88
Period size: 31 Copynumber: 3.0 Consensus size: 32
15939005 TAATGAAAAA
15939015 AAAAAGGTG-AAGAAAAA-AAGAAAAAAAAAGG
1 AAAAA-GTGAAAGAAAAATAAGAAAAAAAAAGG
*
15939046 AAAAAGTGAAAGAAAGAATAA-AAGAAAAAA-G
1 AAAAAGTGAAAGAAA-AATAAGAAAAAAAAAGG
*
15939077 AAAAA--CAAA-AAAAATAAGGAAAAAAAAAG
1 AAAAAGTGAAAGAAAAATAA-GAAAAAAAAAG
15939106 AAATGAATGG
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 11 0.22
30 3 0.06
31 17 0.33
32 10 0.20
33 2 0.04
ACGTcount: A:0.77, C:0.01, G:0.18, T:0.04
Consensus pattern (32 bp):
AAAAAGTGAAAGAAAAATAAGAAAAAAAAAGG
Found at i:15942603 original size:20 final size:20
Alignment explanation
Indices: 15942578--15942619 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
15942568 AAACCCATAC
15942578 CTGCCTAATTCTAAATTTAA
1 CTGCCTAATTCTAAATTTAA
15942598 CTGCCTAATTCTAAATTTAA
1 CTGCCTAATTCTAAATTTAA
15942618 CT
1 CT
15942620 TTTCTCTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.40
Consensus pattern (20 bp):
CTGCCTAATTCTAAATTTAA
Found at i:15947550 original size:64 final size:64
Alignment explanation
Indices: 15947462--15947622 Score: 166
Period size: 64 Copynumber: 2.5 Consensus size: 64
15947452 CAAATAAATG
* * * * * * * *
15947462 CCATAATTGAGCAAAGTCATAATTTTTTAACGAAAGCAATTACT-ATGTTTCTTTTAAGTAAACT
1 CCATAATTGAGTAAAGCCAAAATTTTTAAACGAAACCAA-TAATGAAGTTTCTTTTAAGTAAACA
* * * *
15947526 CCGTAGTTGAGTAAAGCCAAAATTTTTAAACGAAACCAATAATGAAGTTTTTTTTAATTAAACA
1 CCATAATTGAGTAAAGCCAAAATTTTTAAACGAAACCAATAATGAAGTTTCTTTTAAGTAAACA
* *
15947590 CCATAATTGAGTAAAG--TAAATTTTTAAATGAAA
1 CCATAATTGAGTAAAGCCAAAATTTTTAAACGAAA
15947623 ACTAATACGG
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
62 15 0.19
63 3 0.04
64 62 0.77
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (64 bp):
CCATAATTGAGTAAAGCCAAAATTTTTAAACGAAACCAATAATGAAGTTTCTTTTAAGTAAACA
Found at i:15948904 original size:13 final size:12
Alignment explanation
Indices: 15948883--15948939 Score: 55
Period size: 13 Copynumber: 4.8 Consensus size: 12
15948873 AGCTATTTGT
15948883 TTATTTATTTATA
1 TTATTTATTT-TA
* *
15948896 TTTTTTATTTTG
1 TTATTTATTTTA
15948908 TTATTTA--TTA
1 TTATTTATTTTA
*
15948918 TTGTTTTATTTTA
1 TT-ATTTATTTTA
15948931 TTATTTATT
1 TTATTTATT
15948940 ATTTTTGAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
10 4 0.11
11 4 0.11
12 13 0.37
13 14 0.40
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (12 bp):
TTATTTATTTTA
Found at i:15948906 original size:7 final size:7
Alignment explanation
Indices: 15948894--15948945 Score: 59
Period size: 7 Copynumber: 7.0 Consensus size: 7
15948884 TATTTATTTA
15948894 TATTTTT
1 TATTTTT
15948901 TATTTTGT
1 TATTTT-T
*
15948909 TATTTAT
1 TATTTTT
15948916 TATTGTTT
1 TATT-TTT
15948924 TATTTTAT
1 TATTTT-T
*
15948932 TATTTAT
1 TATTTTT
15948939 TATTTTT
1 TATTTTT
15948946 GAAAAATCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
7 20 0.53
8 18 0.47
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (7 bp):
TATTTTT
Found at i:15948918 original size:15 final size:14
Alignment explanation
Indices: 15948886--15948945 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 14
15948876 TATTTGTTTA
15948886 TTTATTTA-TATTT
1 TTTATTTATTATTT
*
15948899 TTTATTTTGTTATTT
1 TTTA-TTTATTATTT
* *
15948914 ATTATTGTTTTATTT
1 TTTATT-TATTATTT
15948929 TATTATTTATTATTT
1 T-TTATTTATTATTT
15948944 TT
1 TT
15948946 GAAAAATCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
13 4 0.11
14 6 0.16
15 23 0.61
16 5 0.13
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTATTTATTATTT
Found at i:15948928 original size:23 final size:22
Alignment explanation
Indices: 15948882--15948945 Score: 94
Period size: 23 Copynumber: 2.9 Consensus size: 22
15948872 TAGCTATTTG
15948882 TTTATTTATTTA-TATTTTTTAT
1 TTTA-TTATTTATTATTTTTTAT
*
15948904 TTTGTTATTTATTATTGTTTTAT
1 TTTATTATTTATTATT-TTTTAT
15948927 TTTATTATTTATTATTTTT
1 TTTATTATTTATTATTTTT
15948946 GAAAAATCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.18
22 10 0.26
23 21 0.55
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (22 bp):
TTTATTATTTATTATTTTTTAT
Found at i:15950565 original size:51 final size:51
Alignment explanation
Indices: 15950497--15950602 Score: 160
Period size: 51 Copynumber: 2.1 Consensus size: 51
15950487 TTATCATTAA
* * **
15950497 GAAA-AAAGATATGATTGATAGCATTGTTTATTTTGTACTTGAACTAGATT
1 GAAACAAAGATATAATTGATAGCATTGCTTATTTTACACTTGAACTAGATT
*
15950547 GAAACAAAGATGTAATTGATAGCATTGCTTATTTTACACTTGAACTAGATT
1 GAAACAAAGATATAATTGATAGCATTGCTTATTTTACACTTGAACTAGATT
15950598 GAAAC
1 GAAAC
15950603 TATGTTATAC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 4 0.08
51 46 0.92
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (51 bp):
GAAACAAAGATATAATTGATAGCATTGCTTATTTTACACTTGAACTAGATT
Found at i:15956413 original size:17 final size:17
Alignment explanation
Indices: 15956391--15956426 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
15956381 TTTTGGATAC
*
15956391 TATTGAGAATTTAAGAT
1 TATTGAGAATTTAAAAT
15956408 TATTGAGAATTTAAAAT
1 TATTGAGAATTTAAAAT
15956425 TA
1 TA
15956427 CCCTAAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (17 bp):
TATTGAGAATTTAAAAT
Found at i:15959386 original size:21 final size:19
Alignment explanation
Indices: 15959362--15959404 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
15959352 AGAAACATTA
*
15959362 AAACATTAAAATACTAACAAG
1 AAACATGAAAATA-TAA-AAG
*
15959383 AAACATGAAAGTATAAAAG
1 AAACATGAAAATATAAAAG
15959402 AAA
1 AAA
15959405 TATCATGAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 3 0.15
21 11 0.55
ACGTcount: A:0.65, C:0.09, G:0.09, T:0.16
Consensus pattern (19 bp):
AAACATGAAAATATAAAAG
Found at i:15967666 original size:72 final size:71
Alignment explanation
Indices: 15967469--15967724 Score: 253
Period size: 72 Copynumber: 3.5 Consensus size: 71
15967459 AAAAATGACA
* * * * * *
15967469 TTTCTAAGATAAAAACTCAATCTTTGTTAAAAACATGAAAAAATATATTTGTTAGAATCCAACAA
1 TTTCTAAAATAAAAACGCAATTTTTGTTAAAAACATG-AAAAATATATTT-TCAGAATTCAATAA
* *
15967534 A-AGCAACG
64 AGA-TAATG
* * ** * *
15967542 TTTCTAAAGTAGGAAATACAATTTTTGCTAAAAATATGAAAAATATAGTTTTCAGAATTCAATAA
1 TTTCTAAAATA-AAAACGCAATTTTTGTTAAAAACATGAAAAATATA-TTTTCAGAATTCAATAA
15967607 AGATAATG
64 AGATAATG
* * *
15967615 TTTCTAAAATAAAAACGCAGTTTTTGTTGAAAACATGAAAAATATACTTTTCAAAATTCAATAAA
1 TTTCTAAAATAAAAACGCAATTTTTGTTAAAAACATGAAAAATATA-TTTTCAGAATTCAATAAA
*
15967680 GATGATG
65 GATAATG
* * * *
15967687 TTTCTAAGATAAAAACGTAATTTTTGTTGAAAATATGA
1 TTTCTAAAATAAAAACGCAATTTTTGTTAAAAACATGA
15967725 CTTTTCTAAG
Statistics
Matches: 152, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
72 85 0.56
73 43 0.28
74 24 0.16
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.33
Consensus pattern (71 bp):
TTTCTAAAATAAAAACGCAATTTTTGTTAAAAACATGAAAAATATATTTTCAGAATTCAATAAAG
ATAATG
Found at i:15969879 original size:53 final size:53
Alignment explanation
Indices: 15969772--15969923 Score: 121
Period size: 56 Copynumber: 2.8 Consensus size: 53
15969762 TAAGGAAATT
* **
15969772 TTGATATTTCAACTTTTTCTCAAAAATCTTAAAATTATTTTTGTTTTAAAAAA
1 TTGATACTTCAACTTTTTCTCAAAAATCTTAAAATTATTTTTGTTGAAAAAAA
** **
15969825 TTGATACTTCAAC-TTTTC-CGCAAATCTTTGAATTATTTTTGTGTGAAAAGAAA
1 TTGATACTTCAACTTTTTCTCAAAAATCTTAAAATTATTTTTGT-TGAAAA-AAA
** * * * * *
15969878 TTTTGATGTTTTAACTTTTCCTC-AAAATTTTGAAATTACTTTTGTT
1 --TTGATACTTCAACTTTTTCTCAAAAATCTTAAAATTATTTTTGTT
15969924 TTAAGGAAAA
Statistics
Matches: 77, Mismatches: 16, Indels: 10
0.75 0.16 0.10
Matches are distributed among these distances:
51 20 0.26
52 9 0.12
53 15 0.19
55 11 0.14
56 21 0.27
57 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.49
Consensus pattern (53 bp):
TTGATACTTCAACTTTTTCTCAAAAATCTTAAAATTATTTTTGTTGAAAAAAA
Found at i:15969971 original size:60 final size:55
Alignment explanation
Indices: 15969905--15970095 Score: 199
Period size: 55 Copynumber: 3.4 Consensus size: 55
15969895 TTCCTCAAAA
* *
15969905 TTTTGAAATTACTTTTGTTTTAAGGAAAAATGGATATTTCAACATTTTCTTCCAATTTT
1 TTTTGAAATTA-TTTTATTTTAAGGAAAAATTGATATTTCAACATTTTCTTCCAA---T
* * *
15969964 CTTTTGAAATTATTTTCATTTAAAGAAAAAATTGATATTTCAACATTTT-TTTCAAT
1 -TTTTGAAATTATTTT-ATTTTAAGGAAAAATTGATATTTCAACATTTTCTTCCAAT
* * *
15970020 TTTTGAAATAATTTTTTGTTTAAGGAAAAATTGATATTTCAACTTTTTCCTT--AAT
1 TTTTGAAATTATTTTAT-TTTAAGGAAAAATTGATATTTCAACATTTT-CTTCCAAT
*
15970075 TTTTGAAATTTTTTTTATTTT
1 TTTTGAAA-TTATTTTATTTT
15970096 TATTAAAAAA
Statistics
Matches: 113, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
54 1 0.01
55 55 0.49
56 7 0.06
57 2 0.02
59 9 0.08
60 39 0.35
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (55 bp):
TTTTGAAATTATTTTATTTTAAGGAAAAATTGATATTTCAACATTTTCTTCCAAT
Found at i:15970090 original size:55 final size:55
Alignment explanation
Indices: 15969760--15970090 Score: 178
Period size: 55 Copynumber: 6.0 Consensus size: 55
15969750 AAGACTTAGT
** * * * * *
15969760 TTTAAGGAAATTTTGATATTTCAACTTTTTCTCAAAAATCTT-AAAATTATTTTTG
1 TTTAAGGAAAAATTGATATTTCAACTTTTTC-CTAAATTTTTGAAATTTTTTTTTG
* * * * *
15969815 TTTTA--AAAAATTGATACTTCAAC-TTTTCCGCAAATCTTTG-AATTATTTTTGTG
1 TTTAAGGAAAAATTGATATTTCAACTTTTTCC-TAAATTTTTGAAATT-TTTTTTTG
** * ** * * * **
15969868 TGAAAAGAAATTTTGATGTTTTAAC-TTTTCCTCAAAATTTTGAAA-TTACTTTTG
1 TTTAAGGAAAAATTGATATTTCAACTTTTTCCT-AAATTTTTGAAATTTTTTTTTG
* * **
15969922 TTTTAAGGAAAAATGGATATTTCAACATTTTCTTCC-AATTTTCTTTTGAAATTATTTTCAT-
1 -TTTAAGGAAAAATTGATATTTCAAC--TTT-TTCCTAA--AT-TTTTGAAATT-TTTTTTTG
* * * * **
15969983 TTAAAGAAAAAATTGATATTTCAACATTTTT-TTCAATTTTTGAAATAATTTTTTG
1 TTTAAGGAAAAATTGATATTTCAAC-TTTTTCCTAAATTTTTGAAATTTTTTTTTG
*
15970038 TTTAAGGAAAAATTGATATTTCAACTTTTTCCTTAATTTTTGAAATTTTTTTT
1 TTTAAGGAAAAATTGATATTTCAACTTTTTCCTAAATTTTTGAAATTTTTTTT
15970091 ATTTTTATTA
Statistics
Matches: 200, Mismatches: 56, Indels: 40
0.68 0.19 0.14
Matches are distributed among these distances:
51 1 0.00
52 13 0.06
53 23 0.12
54 14 0.07
55 98 0.49
56 3 0.01
57 2 0.01
58 5 0.03
59 7 0.04
60 30 0.15
61 1 0.00
62 3 0.01
ACGTcount: A:0.33, C:0.09, G:0.08, T:0.49
Consensus pattern (55 bp):
TTTAAGGAAAAATTGATATTTCAACTTTTTCCTAAATTTTTGAAATTTTTTTTTG
Found at i:15971572 original size:22 final size:22
Alignment explanation
Indices: 15971547--15971589 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
15971537 AAAATATATT
*
15971547 TAAAGGTTTTAAACATCATGCC
1 TAAAGGTCTTAAACATCATGCC
* *
15971569 TAAAGGTCTTATAGATCATGC
1 TAAAGGTCTTAAACATCATGC
15971590 TCGAAGGACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (22 bp):
TAAAGGTCTTAAACATCATGCC
Found at i:15971843 original size:22 final size:22
Alignment explanation
Indices: 15971818--15971871 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
15971808 TTGAAAAAGG
*
15971818 TACTTGGAGGTTTTAAAAATCA
1 TACTTGGAGGTCTTAAAAATCA
* *
15971840 TACTTGAAGGTCTTATAAATCA
1 TACTTGGAGGTCTTAAAAATCA
* *
15971862 TTCATGGAGG
1 TACTTGGAGG
15971872 ACTTTAAGAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.35
Consensus pattern (22 bp):
TACTTGGAGGTCTTAAAAATCA
Found at i:15972270 original size:23 final size:22
Alignment explanation
Indices: 15972222--15972279 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 22
15972212 CTACCTAAAG
**
15972222 GTTTTAGAAAA-TGATATTAGGG
1 GTTTTA-AAAATTGATATTAGAA
15972244 GTTTTAAAAATTGATATTTAGAA
1 GTTTTAAAAATTGATA-TTAGAA
15972267 GTTTAATAAAAAT
1 GTTT--TAAAAAT
15972280 ATCTTGAGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
21 4 0.13
22 11 0.37
23 8 0.27
25 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (22 bp):
GTTTTAAAAATTGATATTAGAA
Found at i:15986432 original size:182 final size:180
Alignment explanation
Indices: 15986117--15986480 Score: 602
Period size: 182 Copynumber: 2.0 Consensus size: 180
15986107 TATTATGTAG
** *
15986117 TTAAATAAAATCATGCAGTTATAATATTAGTCATGCAAATTCATGCAAAAATAAATACCACGCAA
1 TTAAATAAAATCATGCAAATATAATATTAGTCATGCAAATTCATGCAAAAATAAATACCACACAA
15986182 TAAATATAAAAATAAGATTAAGCAATATGCAAAAATCACAAAAAAAAAATGAAAGCAAACATTAC
66 TAAATATAAAAATAAGATTAAGCAATATGCAAAAATCACAAAAAAAAAATGAAAGCAAACATTAC
* * *
15986247 CTCAATAGATCATGAGTTCTAACAATTTTTCACATTTTAAAAACTAATGC
131 CTCAATAGATCACGAGTTCCAACAACTTTTCACATTTTAAAAACTAATGC
*
15986297 TTAAATATATAATCATGCAAATATAATATTAGTCATGCAAATTCATGCAAAAATAAATACCATAC
1 TTAAATA-A-AATCATGCAAATATAATATTAGTCATGCAAATTCATGCAAAAATAAATACCACAC
* *
15986362 AATAAATATAAAAATAAGATTAAGCAATATGTAAAAATCACAAAAAAAAATTGAAAGCAAACATT
64 AATAAATATAAAAATAAGATTAAGCAATATGCAAAAATCACAAAAAAAAAATGAAAGCAAACATT
* * *
15986427 ACCTCAATAGATCACGAGTTCCAACAACTTTTCACCTTTTAAAAGCTGATGC
129 ACCTCAATAGATCACGAGTTCCAACAACTTTTCACATTTTAAAAACTAATGC
15986479 TT
1 TT
15986481 CTTACTATAA
Statistics
Matches: 170, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
180 7 0.04
181 1 0.01
182 162 0.95
ACGTcount: A:0.50, C:0.15, G:0.08, T:0.27
Consensus pattern (180 bp):
TTAAATAAAATCATGCAAATATAATATTAGTCATGCAAATTCATGCAAAAATAAATACCACACAA
TAAATATAAAAATAAGATTAAGCAATATGCAAAAATCACAAAAAAAAAATGAAAGCAAACATTAC
CTCAATAGATCACGAGTTCCAACAACTTTTCACATTTTAAAAACTAATGC
Found at i:15987381 original size:43 final size:43
Alignment explanation
Indices: 15987281--15987418 Score: 163
Period size: 43 Copynumber: 3.2 Consensus size: 43
15987271 CTTTGGAAAG
* * * * *
15987281 ATAAAATACTCCCCCATAACTGAGGCTTTAAAATTTGGAAAAAA
1 ATAAAATGCTCCCCCATAACTAAGGCTTTGAAACTTCG-AAAAA
15987325 ATAAAATGCTCCCCCATAACTAAGGCTTTGAAACTTCGAAAAA
1 ATAAAATGCTCCCCCATAACTAAGGCTTTGAAACTTCGAAAAA
* * *
15987368 ATAAAATGCTCCCCCACT-ATTGAA-ACTTTGAAACTTTGAAAAA
1 ATAAAATGCTCCCCCA-TAACT-AAGGCTTTGAAACTTCGAAAAA
15987411 ATAAAATG
1 ATAAAATG
15987419 AGATATCTGA
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
43 48 0.57
44 36 0.43
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.25
Consensus pattern (43 bp):
ATAAAATGCTCCCCCATAACTAAGGCTTTGAAACTTCGAAAAA
Found at i:15987644 original size:13 final size:13
Alignment explanation
Indices: 15987628--15987652 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15987618 CCAAATCTAT
15987628 GCAATGAATGAAG
1 GCAATGAATGAAG
15987641 GCAATGAATGAA
1 GCAATGAATGAA
15987653 AAGATTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.28, T:0.16
Consensus pattern (13 bp):
GCAATGAATGAAG
Found at i:15993072 original size:21 final size:21
Alignment explanation
Indices: 15993024--15993064 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
15993014 AAGAGTTAGT
15993024 AACATAATATATACAAGGAAA
1 AACATAATATATACAAGGAAA
15993045 AACATAATATATACAAGGAA
1 AACATAATATATACAAGGAA
15993065 TAATATAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.20
Consensus pattern (21 bp):
AACATAATATATACAAGGAAA
Found at i:15994091 original size:23 final size:21
Alignment explanation
Indices: 15994050--15994091 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
15994040 GTAACAATGC
*
15994050 AATCATACAATAAATATTAAA
1 AATCATACAATAAAAATTAAA
15994071 AATCATACCATATAAAAATTA
1 AATCATA-CA-ATAAAAATTA
15994092 TCACTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 2 0.11
23 9 0.50
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.29
Consensus pattern (21 bp):
AATCATACAATAAAAATTAAA
Found at i:15994100 original size:17 final size:16
Alignment explanation
Indices: 15994067--15994114 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
15994057 CAATAAATAT
15994067 TAAAAATCATACCATA
1 TAAAAATCATACCATA
* *
15994083 TAAAAATTATCACTATA
1 TAAAAATCAT-ACCATA
*
15994100 TTATAAATCATACCA
1 -TAAAAATCATACCA
15994115 AACATCATGT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 9 0.36
17 8 0.32
18 8 0.32
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAAAATCATACCATA
Found at i:15994411 original size:24 final size:24
Alignment explanation
Indices: 15994381--15994442 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
15994371 AATATTATTC
*
15994381 AAATATAATATTA-ATCATGCAAT
1 AAATATAATATCATATCATGCAAT
15994404 AACATATAATATCATATCATGCAAT
1 AA-ATATAATATCATATCATGCAAT
*
15994429 AAATATAAAATCAT
1 AAATATAATATCAT
15994443 GCAATAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
23 2 0.06
24 21 0.60
25 12 0.34
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.32
Consensus pattern (24 bp):
AAATATAATATCATATCATGCAAT
Found at i:15994457 original size:24 final size:23
Alignment explanation
Indices: 15994385--15994457 Score: 73
Period size: 19 Copynumber: 3.3 Consensus size: 23
15994375 TTATTCAAAT
* *
15994385 ATAATATTAATCATGCAATAACA
1 ATAATATAAATCATGCAATAATA
*
15994408 TATAATATCATATCATGCAAT-A-A
1 -ATAATAT-AAATCATGCAATAATA
15994431 AT-ATA-AAATCATGCAATAATA
1 ATAATATAAATCATGCAATAATA
15994452 ATAATA
1 ATAATA
15994458 AATGAATAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
19 11 0.26
20 1 0.02
21 6 0.14
22 5 0.12
23 1 0.02
24 8 0.19
25 10 0.24
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.32
Consensus pattern (23 bp):
ATAATATAAATCATGCAATAATA
Found at i:15994563 original size:20 final size:20
Alignment explanation
Indices: 15994538--15994588 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
15994528 CAAATAGATG
15994538 TGCAATT-AAATATATAATCA
1 TGCAATTAAAATATA-AATCA
*
15994558 TGCAATTAACAATGTAAATCA
1 TGCAATTAA-AATATAAATCA
*
15994579 TGCAAATAAA
1 TGCAATTAAA
15994589 CATACAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 8 0.30
21 14 0.52
22 5 0.19
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (20 bp):
TGCAATTAAAATATAAATCA
Found at i:15994709 original size:55 final size:55
Alignment explanation
Indices: 15994540--15994754 Score: 263
Period size: 55 Copynumber: 3.9 Consensus size: 55
15994530 AATAGATGTG
* * * *
15994540 CAATTAAATATATAATCATGCAATTAA-CA-ATGTAAATCATGCAAATAAACATA
1 CAATTAAATATATAATTATGCAAATAATAATATATAAATCATGCAAATAAACATA
* * * * *
15994593 CAATTAAATATATAATTATGCAAATAAAAAATATATAAACCGTGCAAATAAATATG
1 CAATTAAATATATAATTATGCAAAT-AATAATATATAAATCATGCAAATAAACATA
* * *
15994649 CAATTAATTATATAATTATGCAAATAGTAATATACAAATCATGCAAATAAACATA
1 CAATTAAATATATAATTATGCAAATAATAATATATAAATCATGCAAATAAACATA
* * * *
15994704 AAATTAAATATATAATGATACAAATAATAATACATAAATCATGCAAATAAA
1 CAATTAAATATATAATTATGCAAATAATAATATATAAATCATGCAAATAAA
15994755 TATATAAAAC
Statistics
Matches: 136, Mismatches: 23, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
53 23 0.17
54 2 0.01
55 68 0.50
56 43 0.32
ACGTcount: A:0.55, C:0.10, G:0.06, T:0.29
Consensus pattern (55 bp):
CAATTAAATATATAATTATGCAAATAATAATATATAAATCATGCAAATAAACATA
Found at i:15994728 original size:111 final size:108
Alignment explanation
Indices: 15994527--15994757 Score: 300
Period size: 111 Copynumber: 2.1 Consensus size: 108
15994517 TAATAATCAA
* * * *
15994527 GCAAATAGATGTGCAATTAAATATATAATCATGCAATTAACAATGTAAATCATGCAAATAAACAT
1 GCAAATAAATATGCAATTAAATATATAATCATGCAAATAACAATATAAATCATGCAAATAAACAT
* * * * *
15994592 ACAATTAAATATATAATTATGCAAATAAAAAATATATAAACCGT
66 AAAATTAAATATATAATGATACAAAT-AAAAATACATAAACCAT
* * **
15994636 GCAAATAAATATGCAATTAATTATATAATTATGCAAATAGTAATATACAAATCATGCAAATAAAC
1 GCAAATAAATATGCAATTAAATATATAATCATGCAAATAACAATAT--AAATCATGCAAATAAAC
* *
15994701 ATAAAATTAAATATATAATGATACAAATAATAATACATAAATCAT
64 ATAAAATTAAATATATAATGATACAAATAAAAATACATAAACCAT
15994746 GCAAATAAATAT
1 GCAAATAAATAT
15994758 ATAAAACCAT
Statistics
Matches: 105, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
109 38 0.36
110 25 0.24
111 42 0.40
ACGTcount: A:0.54, C:0.10, G:0.07, T:0.29
Consensus pattern (108 bp):
GCAAATAAATATGCAATTAAATATATAATCATGCAAATAACAATATAAATCATGCAAATAAACAT
AAAATTAAATATATAATGATACAAATAAAAATACATAAACCAT
Found at i:15994774 original size:132 final size:132
Alignment explanation
Indices: 15994610--15994888 Score: 353
Period size: 132 Copynumber: 2.1 Consensus size: 132
15994600 ATATATAATT
* * * *
15994610 ATGCAAATAAAAAATATATAAACCGTGCAAATAAATATGCAATTAATTATATAATTATGCAAATA
1 ATGCAAAT-AAATATATATAAACCATGCAAATAAATATGCAATTAAATATATAATCATGCAAATA
** * *
15994675 GTAATATACAAATCATGCAAATAAACATAAAATTAAATATATAATGATACAAATAATAATACATA
65 ACAATATACAAACCATGCAAAT-AACATAAAATTAAATATATAATGATACAAATAACAATACATA
15994740 AATC
129 AATC
*
15994744 ATGCAAATAAATATATA-AAACCATGCAAATAAATATGCAATTAAATATATAATCATGTAAATAA
1 ATGCAAATAAATATATATAAACCATGCAAATAAATATGCAATTAAATATATAATCATGCAAATAA
* * ** * * * * ** *
15994808 CAATATATAAACCATGCAAATAATATGCAATTAAATATCTAATTATGCAAATACCAATGTATTAA
66 CAATATACAAACCATGCAAATAACATAAAATTAAATATATAATGATACAAATAACAATACATAAA
15994873 TC
131 TC
15994875 ATGCAAATAAATAT
1 ATGCAAATAAATAT
15994889 GCAATTAAAT
Statistics
Matches: 125, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
131 49 0.39
132 60 0.48
133 8 0.06
134 8 0.06
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (132 bp):
ATGCAAATAAATATATATAAACCATGCAAATAAATATGCAATTAAATATATAATCATGCAAATAA
CAATATACAAACCATGCAAATAACATAAAATTAAATATATAATGATACAAATAACAATACATAAA
TC
Found at i:15994786 original size:77 final size:78
Alignment explanation
Indices: 15994678--15994830 Score: 209
Period size: 77 Copynumber: 2.0 Consensus size: 78
15994668 GCAAATAGTA
* * * *
15994678 ATATACAAATCATGCAAATAAACATAAAATTAAATATATAATGATACAAATAATAATACATAAAT
1 ATATACAAACCATGCAAATAAACATAAAATTAAATATATAATCATACAAATAACAATACATAAAC
15994743 CATGCAAATAAAT
66 CATGCAAATAAAT
* ** ** *
15994756 ATATA-AAACCATGCAAATAAATATGCAATTAAATATATAATCATGTAAATAACAATATATAAAC
1 ATATACAAACCATGCAAATAAACATAAAATTAAATATATAATCATACAAATAACAATACATAAAC
15994820 CATGCAAATAA
66 CATGCAAATAA
15994831 TATGCAATTA
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
77 60 0.92
78 5 0.08
ACGTcount: A:0.58, C:0.11, G:0.05, T:0.27
Consensus pattern (78 bp):
ATATACAAACCATGCAAATAAACATAAAATTAAATATATAATCATACAAATAACAATACATAAAC
CATGCAAATAAAT
Found at i:15994814 original size:54 final size:55
Alignment explanation
Indices: 15994740--15994915 Score: 250
Period size: 54 Copynumber: 3.2 Consensus size: 55
15994730 ATAATACATA
15994740 AATCATGCAAAT-A-AATATATAAAACCATGCAAATAAATATGCAATTAAATATAT
1 AATCATGCAAATAACAATATAT-AAACCATGCAAATAAATATGCAATTAAATATAT
* *
15994794 AATCATGTAAATAACAATATATAAACCATGCAAAT-AATATGCAATTAAATATCT
1 AATCATGCAAATAACAATATATAAACCATGCAAATAAATATGCAATTAAATATAT
* * * * *
15994848 AATTATGCAAATACCAATGTATTAATCATGCAAATAAATATGCAATTAAATATAT
1 AATCATGCAAATAACAATATATAAACCATGCAAATAAATATGCAATTAAATATAT
*
15994903 AATCATACAAATA
1 AATCATGCAAATA
15994916 TAATATTAGT
Statistics
Matches: 108, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
54 58 0.54
55 43 0.40
56 7 0.06
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.30
Consensus pattern (55 bp):
AATCATGCAAATAACAATATATAAACCATGCAAATAAATATGCAATTAAATATAT
Found at i:15994828 original size:23 final size:22
Alignment explanation
Indices: 15994787--15994830 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
15994777 TATGCAATTA
* *
15994787 AATATATAATCATGTAAATAAC
1 AATATATAACCATGCAAATAAC
15994809 AATATATAAACCATGCAAATAA
1 AATATAT-AACCATGCAAATAA
15994831 TATGCAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (22 bp):
AATATATAACCATGCAAATAAC
Done.