Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 9 of 117
Found at i:902434 original size:20 final size:22
Alignment explanation
Indices: 902395--902434 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
902385 AGTTGGCACA
*
902395 AATTTATTTAATTTTAATAATT
1 AATTTATTTAATTCTAATAATT
902417 AATTT-TTTAA-TCTAATAA
1 AATTTATTTAATTCTAATAA
902435 ATATATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 5 0.29
22 5 0.29
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (22 bp):
AATTTATTTAATTCTAATAATT
Found at i:903304 original size:20 final size:22
Alignment explanation
Indices: 903265--903310 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
903255 GGTGTTAATT
*
903265 TTAATATAAATGGTTATATTTA
1 TTAATATAAATAGTTATATTTA
903287 TTAATATAAATAG-T-TATTTA
1 TTAATATAAATAGTTATATTTA
903307 TTAA
1 TTAA
903311 AAACTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.43
21 1 0.04
22 12 0.52
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (22 bp):
TTAATATAAATAGTTATATTTA
Found at i:904679 original size:3 final size:3
Alignment explanation
Indices: 904673--904714 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
904663 AAAGTAAGTA
904673 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
904715 CATGAAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:906213 original size:20 final size:21
Alignment explanation
Indices: 906161--906214 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
906151 ATTAAACAAA
* * *
906161 ATTTAATTATTTAAAATTATT
1 ATTTTATTATTTAAAATGAAT
906182 ATTTTATT-TTTAAAATGAAT
1 ATTTTATTATTTAAAATGAAT
906202 -TTTTATTATTTAA
1 ATTTTATTATTTAA
906215 TTCATTTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 7 0.24
20 15 0.52
21 7 0.24
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTTATTATTTAAAATGAAT
Found at i:906932 original size:14 final size:14
Alignment explanation
Indices: 906906--906945 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
906896 GATGAGATGA
*
906906 ATTATAGTAAAAA-
1 ATTATATTAAAAAT
906919 ATTATTATTAAAAAT
1 ATTA-TATTAAAAAT
906934 ATTATATTAAAA
1 ATTATATTAAAA
906946 TTATATGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 4 0.17
14 16 0.67
15 4 0.17
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (14 bp):
ATTATATTAAAAAT
Found at i:907586 original size:23 final size:23
Alignment explanation
Indices: 907560--907605 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
907550 GTTTATCTAA
907560 ATGAAATCATAAAATATTATTTT
1 ATGAAATCATAAAATATTATTTT
907583 ATGAAATCATAAAATATTATTTT
1 ATGAAATCATAAAATATTATTTT
907606 TTATTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (23 bp):
ATGAAATCATAAAATATTATTTT
Found at i:908206 original size:17 final size:17
Alignment explanation
Indices: 908181--908213 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
908171 AAACACTAAG
*
908181 AAAACAACAAAACATAT
1 AAAAAAACAAAACATAT
908198 AAAAAAACAAAACATA
1 AAAAAAACAAAACATA
908214 GCCCTCTTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (17 bp):
AAAAAAACAAAACATAT
Found at i:909478 original size:156 final size:156
Alignment explanation
Indices: 909194--909652 Score: 855
Period size: 156 Copynumber: 2.9 Consensus size: 156
909184 TTAAAATTTT
* * * *
909194 ACCAAGTAGTTAATTGTTGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
909259 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTACAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTACAGAGGCTCCGTCGTCG
909324 GATTATTTAAAGAAAAATCAAGATCA
131 GATTATTTAAAGAAAAATCAAGATCA
909350 ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
909415 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTACAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTACAGAGGCTCCGTCGTCG
909480 GATTATTTAAAGAAAAATCAAGATCA
131 GATTATTTAAAGAAAAATCAAGATCA
909506 ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
* *
909571 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCATCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTACAGAGGCTCCGTCGTCG
*
909636 GATTAATTAAAGAAAAA
131 GATTATTTAAAGAAAAA
909653 AGAAAAAAAA
Statistics
Matches: 296, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
156 296 1.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.29
Consensus pattern (156 bp):
ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTACAGAGGCTCCGTCGTCG
GATTATTTAAAGAAAAATCAAGATCA
Found at i:909702 original size:1 final size:1
Alignment explanation
Indices: 909698--909722 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
909688 AAAAAAATTC
909698 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
909723 CCTGGAGCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:909705 original size:15 final size:14
Alignment explanation
Indices: 909681--909721 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 14
909671 AAAATCAAAG
*
909681 TCAAATAAAAAAAAT
1 TCAAA-AAAAAAAAA
909696 TCAAAAAAAAAAAA
1 TCAAAAAAAAAAAA
909710 --AAAAAAAAAAAA
1 TCAAAAAAAAAAAA
909722 ACCTGGAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 12 0.48
14 8 0.32
15 5 0.20
ACGTcount: A:0.85, C:0.05, G:0.00, T:0.10
Consensus pattern (14 bp):
TCAAAAAAAAAAAA
Found at i:910069 original size:19 final size:20
Alignment explanation
Indices: 910034--910079 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
910024 GAACACCGGT
* *
910034 GCCGGATTCTGGGAAATTTG
1 GCCGGAATCTGGGAAATTTC
910054 GCCGGAATCT-GGAAATTTC
1 GCCGGAATCTGGGAAATTTC
910073 GCCGGAA
1 GCCGGAA
910080 GTTGGCCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (20 bp):
GCCGGAATCTGGGAAATTTC
Found at i:910126 original size:20 final size:19
Alignment explanation
Indices: 910103--910143 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
910093 TCGCCGGTTT
*
910103 CTGGGATTCTTCGCCGGAAA
1 CTGGG-TTCGTCGCCGGAAA
*
910123 CTGGGTTGGTCGCCGGAAA
1 CTGGGTTCGTCGCCGGAAA
910142 CT
1 CT
910144 TCAATGTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.17, C:0.24, G:0.34, T:0.24
Consensus pattern (19 bp):
CTGGGTTCGTCGCCGGAAA
Found at i:910172 original size:31 final size:31
Alignment explanation
Indices: 910132--910201 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
910122 ACTGGGTTGG
*
910132 TCGCCGGAAACTTC-AATGTTCGCCGGAATTGT
1 TCGCCGGAAAATTCAAAT-TTCGCCGGAATT-T
910164 T-GCCGGAAAATTCAAATTTCGCCGGAATTT
1 TCGCCGGAAAATTCAAATTTCGCCGGAATTT
910194 TCGCCGGA
1 TCGCCGGA
910202 TTCTGGAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
30 2 0.06
31 29 0.83
32 4 0.11
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (31 bp):
TCGCCGGAAAATTCAAATTTCGCCGGAATTT
Found at i:910589 original size:42 final size:45
Alignment explanation
Indices: 910531--910637 Score: 118
Period size: 44 Copynumber: 2.4 Consensus size: 45
910521 AATCAAAAAT
*
910531 AAAAAAATACTAGATAATAATCAGATAAATCA-AA-AGAT-ATTAAA
1 AAAAAAATACTAGATAATAA--AGAAAAATCAGAACAGATAATTAAA
*
910575 AAAAAAAT-CT-GATAATCAAGAAAAATCAGAACAGATAATTAAAA
1 AAAAAAATACTAGATAATAAAGAAAAATCAGAACAGATAATT-AAA
*
910619 AAAAAAATAATA-ATAATAA
1 AAAAAAATACTAGATAATAA
910638 TAATAAATAT
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
40 9 0.17
41 2 0.04
42 11 0.21
43 5 0.09
44 19 0.36
45 7 0.13
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (45 bp):
AAAAAAATACTAGATAATAAAGAAAAATCAGAACAGATAATTAAA
Found at i:910601 original size:40 final size:42
Alignment explanation
Indices: 910547--910624 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
910537 ATACTAGATA
*
910547 ATAATCAGATAAATCA-AA-AGAT-ATTAAAAAAAAAATCTG
1 ATAATCAGAAAAATCAGAACAGATAATTAAAAAAAAAATCTG
910586 ATAATCAAGAAAAATCAGAACAGATAATTAAAAAAAAAA
1 ATAATC-AGAAAAATCAGAACAGATAATTAAAAAAAAAA
910625 ATAATAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
39 6 0.18
40 9 0.26
41 2 0.06
42 4 0.12
43 13 0.38
ACGTcount: A:0.65, C:0.08, G:0.08, T:0.19
Consensus pattern (42 bp):
ATAATCAGAAAAATCAGAACAGATAATTAAAAAAAAAATCTG
Found at i:910732 original size:40 final size:38
Alignment explanation
Indices: 910624--910732 Score: 105
Period size: 40 Copynumber: 2.7 Consensus size: 38
910614 TAAAAAAAAA
* *
910624 AATAATAATAATAATAATAAATATATAACTATATACATAT
1 AATAATAATAA-AATAATAAA-ATACAAATATATACATAT
*
910664 AA-ATCTAAT-AAATAAATAAAATAAACAAATATATACATAAT
1 AATA-ATAATAAAAT-AATAAAAT--ACAAATATATACAT-AT
910705 AATAATAATAAAATACATAAAATACAAA
1 AATAATAATAAAATA-ATAAAATACAAA
910733 AGAAGAAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
38 5 0.09
39 8 0.14
40 23 0.40
41 9 0.16
42 12 0.21
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.28
Consensus pattern (38 bp):
AATAATAATAAAATAATAAAATACAAATATATACATAT
Found at i:910870 original size:16 final size:15
Alignment explanation
Indices: 910849--910889 Score: 66
Period size: 16 Copynumber: 2.7 Consensus size: 15
910839 CTTTTTGTTT
910849 TATAATAATAATTAA
1 TATAATAATAATTAA
910864 CTATAATAATAATTAA
1 -TATAATAATAATTAA
910880 -ATAATAATAA
1 TATAATAATAA
910890 CAATAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.40
16 15 0.60
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAATAATAATTAA
Found at i:910896 original size:26 final size:28
Alignment explanation
Indices: 910852--910908 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 28
910842 TTTGTTTTAT
* *
910852 AATAATAATTAACTATAATAATAATT-A
1 AATAATAATTAACAATAATAAAAATTCA
910879 AATAATAA-TAACAATAATAAAAATTCA
1 AATAATAATTAACAATAATAAAAATTCA
910906 AAT
1 AAT
910909 GATTTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (28 bp):
AATAATAATTAACAATAATAAAAATTCA
Found at i:911089 original size:19 final size:20
Alignment explanation
Indices: 911058--911103 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
911048 GGGGAATTAT
911058 TATTGAAAATAA-TAAA-AAA
1 TATT-AAAATAATTAAATAAA
*
911077 TATTAAAATTAATTAAATTAA
1 TATTAAAA-TAATTAAATAAA
911098 TATTAA
1 TATTAA
911104 CTCTTTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 4 0.17
19 7 0.30
20 4 0.17
21 8 0.35
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
TATTAAAATAATTAAATAAA
Found at i:911273 original size:21 final size:22
Alignment explanation
Indices: 911234--911274 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
911224 AAATTAATAA
*
911234 AAAAGCCCTAAACCATAAAATC
1 AAAAGCCCCAAACCATAAAATC
*
911256 AAAA-CCCCAAACCTTAAAA
1 AAAAGCCCCAAACCATAAAA
911275 CCCTAAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.56, C:0.29, G:0.02, T:0.12
Consensus pattern (22 bp):
AAAAGCCCCAAACCATAAAATC
Found at i:911304 original size:29 final size:28
Alignment explanation
Indices: 911243--911367 Score: 83
Period size: 29 Copynumber: 4.4 Consensus size: 28
911233 AAAAAGCCCT
* * * * *
911243 AAACCATAAAATCAAAACCCCAAACCTTA
1 AAACCCTAAAAACGAAACCCAAAACC-TC
911272 AAACCCTAAAAACGAAACCCAAAACCGTC
1 AAACCCTAAAAACGAAACCCAAAACC-TC
* ** *
911301 AAA-CCT-TAAATTAAACCCGAAACCTCC
1 AAACCCTAAAAACGAAACCCAAAACCT-C
* *
911328 AAACCCTAAAAATGAAACCCTAAACACTC
1 AAACCCTAAAAACGAAACCCAAAAC-CTC
*
911357 TAAATCCTAAA
1 -AAACCCTAAA
911368 TTAAACCCTA
Statistics
Matches: 77, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
26 1 0.01
27 18 0.23
28 6 0.08
29 41 0.53
30 11 0.14
ACGTcount: A:0.51, C:0.31, G:0.03, T:0.14
Consensus pattern (28 bp):
AAACCCTAAAAACGAAACCCAAAACCTC
Found at i:911324 original size:56 final size:57
Alignment explanation
Indices: 911257--911390 Score: 157
Period size: 56 Copynumber: 2.3 Consensus size: 57
911247 CATAAAATCA
911257 AAACCCCAAACCTTAAAACCCTAAAAACGAAACCCAAAAC-CGTC-AAA-CCTTAAATT
1 AAACCCCAAACCTTAAAACCCTAAAAACGAAACCCAAAACAC-TCTAAATCC-TAAATT
* ** * *
911313 AAACCCGAAACCTCCAAACCCTAAAAATGAAACCCTAAACACTCTAAATCCTAAATT
1 AAACCCCAAACCTTAAAACCCTAAAAACGAAACCCAAAACACTCTAAATCCTAAATT
*
911370 AAACCCTAAACCATCTAAAAC
1 AAACCCCAAACC-T-TAAAAC
911391 TAAAAAACCT
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
56 37 0.57
57 21 0.32
58 3 0.05
59 4 0.06
ACGTcount: A:0.49, C:0.32, G:0.03, T:0.16
Consensus pattern (57 bp):
AAACCCCAAACCTTAAAACCCTAAAAACGAAACCCAAAACACTCTAAATCCTAAATT
Found at i:911375 original size:28 final size:27
Alignment explanation
Indices: 911286--911388 Score: 100
Period size: 28 Copynumber: 3.7 Consensus size: 27
911276 CCTAAAAACG
* *
911286 AAACCCAAAACCGTC-AAACCTTAAATT
1 AAACCCTAAACC-TCTAAACCCTAAATT
* * *
911313 AAACCCGAAACCTCCAAACCCTAAAAATG
1 AAACCCTAAACCTCTAAACCCT--AAATT
*
911342 AAACCCTAAACACTCTAAATCCTAAATT
1 AAACCCTAAAC-CTCTAAACCCTAAATT
911370 AAACCCTAAACCATCTAAA
1 AAACCCTAAACC-TCTAAA
911389 ACTAAAAAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.03
27 18 0.28
28 21 0.33
29 14 0.22
30 9 0.14
ACGTcount: A:0.49, C:0.31, G:0.03, T:0.17
Consensus pattern (27 bp):
AAACCCTAAACCTCTAAACCCTAAATT
Found at i:913119 original size:4 final size:4
Alignment explanation
Indices: 913103--913145 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
913093 TGTCACACAC
* * * *
913103 TTAT TTGT TTAT TTAT TTAC TTCT TTAT TTAT TTTT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA
913146 CATTATTGAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:918250 original size:194 final size:190
Alignment explanation
Indices: 917921--918306 Score: 529
Period size: 194 Copynumber: 2.0 Consensus size: 190
917911 ACAAACTGTC
** * * * * ** * * *
917921 AGCTCGTATTTCTTTATTGTTACTACTGTTGAATTTTGAGCCGTATAAGAACGCTTTGCTGAAAG
1 AGCTCGTATTTCTTTACCGTCACTACTATTAAATTTCGAGCCACATAAGAACACTTTACTAAAAG
**
917986 TGCTCAACCAAGCTTATGTTGAGCATAACATTTCTATTGAAAAGGTAGATCACATGGTTGAAAAT
66 TGCTCAACCAAGCTTATGTCAAGCATAACATTTCTATTGAAAAGGTAGATCACATGGTTGAAAAT
* *
918051 ATTATAGCCCCAAATTTTATTTATCACCTTCAATGATGACAAAATATCTCCAGAAGGACATGGT
131 ATTATAACCCCAAA---T-TTTATCACCTTCAATGATGACAAAATACCTCCAGAAGGACATGGT
*
918115 AGCTCGTATTTCTTTACCGTCACTACTATTAAATTTCGAGCCACATAGGAACACTTTACTAAAAG
1 AGCTCGTATTTCTTTACCGTCACTACTATTAAATTTCGAGCCACATAAGAACACTTTACTAAAAG
* * * **
918180 TGCTCAACCAAGCTTATGTCAAGCATAACATTTTTGTTGAGAAGGTAGATCACATGGTTGGGAAT
66 TGCTCAACCAAGCTTATGTCAAGCATAACATTTCTATTGAAAAGGTAGATCACATGGTTGAAAAT
* *
918245 ATTATAACCCCAAATTTTATCACCTTCAATGATGACGAAATACCTTCAGAAGGACATGGT
131 ATTATAACCCCAAATTTTATCACCTTCAATGATGACAAAATACCTCCAGAAGGACATGGT
918305 AG
1 AG
918307 TGTTAAGGCT
Statistics
Matches: 169, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
190 44 0.26
191 1 0.01
194 124 0.73
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (190 bp):
AGCTCGTATTTCTTTACCGTCACTACTATTAAATTTCGAGCCACATAAGAACACTTTACTAAAAG
TGCTCAACCAAGCTTATGTCAAGCATAACATTTCTATTGAAAAGGTAGATCACATGGTTGAAAAT
ATTATAACCCCAAATTTTATCACCTTCAATGATGACAAAATACCTCCAGAAGGACATGGT
Found at i:919975 original size:21 final size:21
Alignment explanation
Indices: 919949--919998 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
919939 TTTTTTGGAA
919949 GTAGCCAAGTACCCTGAATGG
1 GTAGCCAAGTACCCTGAATGG
919970 GTAGCCAAGTACCCTGAATGG
1 GTAGCCAAGTACCCTGAATGG
919991 GTAGCCAA
1 GTAGCCAA
919999 TATAGTCCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.24, G:0.28, T:0.18
Consensus pattern (21 bp):
GTAGCCAAGTACCCTGAATGG
Found at i:920589 original size:24 final size:23
Alignment explanation
Indices: 920534--920587 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 23
920524 TTTTCTTTTG
920534 TATTTTATGTATTCTATTATTAT
1 TATTTTATGTATTCTATTATTAT
920557 TATTATTATGTATATCT-TTATTCATT
1 TATT-TTATGTAT-TCTATTATT-A-T
920583 TATTT
1 TATTT
920588 ATTTTTATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
23 4 0.15
24 13 0.48
25 5 0.19
26 5 0.19
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.65
Consensus pattern (23 bp):
TATTTTATGTATTCTATTATTAT
Found at i:920645 original size:3 final size:3
Alignment explanation
Indices: 920633--920662 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
920623 TATATAGTTA
920633 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
920663 TTTGTAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:921142 original size:24 final size:23
Alignment explanation
Indices: 921098--921142 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
921088 TTATCAGAAA
* *
921098 TTTTTTGGGGATTTTTCGAAATT
1 TTTTTTGGGAATTTCTCGAAATT
*
921121 TTTTTCTGGGAATTTCTGGAAA
1 TTTTT-TGGGAATTTCTCGAAA
921143 ATTCCAGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 5 0.28
24 13 0.72
ACGTcount: A:0.20, C:0.07, G:0.22, T:0.51
Consensus pattern (23 bp):
TTTTTTGGGAATTTCTCGAAATT
Found at i:921219 original size:19 final size:19
Alignment explanation
Indices: 921157--921220 Score: 54
Period size: 19 Copynumber: 3.7 Consensus size: 19
921147 CAGTTTCCGG
*
921157 TTGAATTTTCCGGCCAATC-
1 TTGAAGTTTCCGGCCAA-CA
921176 TTGAAGTTTCCGGCC-A-A
1 TTGAAGTTTCCGGCCAACA
921193 ---AA--TTCCGGCCAACA
1 TTGAAGTTTCCGGCCAACA
921207 TTGAAGTTTCCGGC
1 TTGAAGTTTCCGGC
921221 GACCTGCCCA
Statistics
Matches: 36, Mismatches: 1, Indels: 16
0.68 0.02 0.30
Matches are distributed among these distances:
12 8 0.22
13 1 0.03
14 3 0.08
17 2 0.06
18 1 0.03
19 21 0.58
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (19 bp):
TTGAAGTTTCCGGCCAACA
Found at i:921258 original size:20 final size:20
Alignment explanation
Indices: 921235--921277 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
921225 TGCCCAGTTT
*
921235 CCGGCGAAGTATCCCAGAAA
1 CCGGCGAAGAATCCCAGAAA
921255 CCGGCGAAGAATCCCAGAAA
1 CCGGCGAAGAATCCCAGAAA
921275 CCG
1 CCG
921278 TCAAATTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.33, G:0.26, T:0.07
Consensus pattern (20 bp):
CCGGCGAAGAATCCCAGAAA
Found at i:921339 original size:20 final size:20
Alignment explanation
Indices: 921296--921340 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
921286 CCGGCCAACT
*
921296 TCCGGCGAAAAAACCCAGAT
1 TCCGGCGAAAAAACCCAGAA
***
921316 TCCGGCGAAAATTTCCAGAA
1 TCCGGCGAAAAAACCCAGAA
921336 TCCGG
1 TCCGG
921341 TGAATCTTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (20 bp):
TCCGGCGAAAAAACCCAGAA
Found at i:921719 original size:1 final size:1
Alignment explanation
Indices: 921674--921708 Score: 70
Period size: 1 Copynumber: 35.0 Consensus size: 1
921664 CCGCTCCAGG
921674 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
921709 GAATTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:922041 original size:156 final size:156
Alignment explanation
Indices: 921756--922215 Score: 841
Period size: 156 Copynumber: 2.9 Consensus size: 156
921746 TTTTTTTTCT
* *
921756 TTTTTCTTT-AATCAATCCGACGACGGAGCCTCTACAAGTAAAAACAGTAGTTTTTCTTGCATAC
1 TTTTTCTTTAAAT-AATCCGACGACGGAGCCTCTGCAAGT-GAAACAGTAGTTTTTCTTGCATAC
921820 TCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTT
64 TCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTT
921885 CGATAATTAATTAATTGGTTGATCTTGA
129 CGATAATTAATTAATTGGTTGATCTTGA
921913 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
921978 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
66 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
922043 ATAATTAATTAATTGGTTGATCTTGA
131 ATAATTAATTAATTGGTTGATCTTGA
922069 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
* *
922134 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCA
66 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
* *
922199 ATAACTAATTACTTGGT
131 ATAATTAATTAATTGGT
922216 AAAATTTTAA
Statistics
Matches: 296, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
156 259 0.88
157 34 0.11
158 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.38
Consensus pattern (156 bp):
TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
ATAATTAATTAATTGGTTGATCTTGA
Found at i:925935 original size:10 final size:10
Alignment explanation
Indices: 925920--925955 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
925910 AAGAAGATGA
925920 AAAAAAAAAG
1 AAAAAAAAAG
925930 AAAAAAAAAG
1 AAAAAAAAAG
*
925940 GAAAAAAAAG
1 AAAAAAAAAG
925950 AAAAAA
1 AAAAAA
925956 TGAGAAAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:925955 original size:11 final size:11
Alignment explanation
Indices: 925904--925948 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
925894 ATGAAAAATG
925904 AGAAAAAAGAAGA
1 AGAAAAAA-AA-A
*
925917 TGAAAAAAAAA
1 AGAAAAAAAAA
925928 AGAAAAAAAAA
1 AGAAAAAAAAA
*
925939 GGAAAAAAAA
1 AGAAAAAAAA
925949 GAAAAAATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 20 0.69
12 2 0.07
13 7 0.24
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:925961 original size:10 final size:10
Alignment explanation
Indices: 925922--925963 Score: 52
Period size: 9 Copynumber: 4.4 Consensus size: 10
925912 GAAGATGAAA
*
925922 AAAAAAAGAA
1 AAAAAAAGAG
925932 AAAAAAAG-G
1 AAAAAAAGAG
925941 AAAAAAA-AG
1 AAAAAAAGAG
*
925950 AAAAAATGAG
1 AAAAAAAGAG
925960 AAAA
1 AAAA
925964 TGAAAAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 14 0.50
10 14 0.50
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.02
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:927365 original size:41 final size:40
Alignment explanation
Indices: 927202--927978 Score: 1086
Period size: 41 Copynumber: 18.9 Consensus size: 40
927192 GTCTAGGAGT
*
927202 ATTTACTTTTCCAAGTTCGT-TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCA
927242 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTC-AAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
927284 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTC-AAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
*
927326 ATTTACTTTTTCAAAGTTCGT-TACCTCTGTTTAGAGGAGCA
1 ATTTAC-TTTTCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCA
*
927367 ATTTATTTTTCAAAGTTCCGT-TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-T-CGTGTGCCTCTGTTTAGAGGAGCA
* *
927408 ATTTACTTTTCCAAAGTCGTGGTACCTCTGTTGAGAGGAGCA
1 ATTTACTTTT-CAAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
*
927450 ATTTACTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
*
927491 ATTTATTTTTCAAAGTTCCGT-TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-T-CGTGTGCCTCTGTTTAGAGGAGCA
* *
927532 ATTTATTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
927573 ATTTACTTTTCAAAGTTCGT-TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCA
*
927613 ATTTACTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
927654 ATTTACTTTTCAAAGTTCGT-TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCA
927694 ATTTACTTTTCAAAGTTCGT-TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCA
*
927734 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
*
927775 ATTTATTTTTCCAAAGTCGTAGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CAAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
927817 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
* *
927858 ATTTACTTTTCCAAAGTCGTGGTACCTCTGTTGAGAGGAGCA
1 ATTTACTTTT-CAAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
927900 ATTTACTTTTCAAAGTTCCGT-TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-T-CGTGTGCCTCTGTTTAGAGGAGCA
* *
927941 ATTTAC-TTTCAAAAGTCGTTGAGTCTCTGTTTAGAGGA
1 ATTTACTTTTC-AAAGTCG-TGTGCCTCTGTTTAGAGGA
927979 ACTTCGACCA
Statistics
Matches: 684, Mismatches: 27, Indels: 51
0.90 0.04 0.07
Matches are distributed among these distances:
39 13 0.02
40 144 0.21
41 320 0.47
42 192 0.28
43 15 0.02
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (40 bp):
ATTTACTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCA
Found at i:927424 original size:124 final size:122
Alignment explanation
Indices: 927202--927978 Score: 1121
Period size: 124 Copynumber: 6.3 Consensus size: 122
927192 GTCTAGGAGT
*
927202 ATTTACTTTTCCAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGC
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTC-AAAGTCGT-GTGC
*
927267 CTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
64 CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* *
927326 ATTTACTTTTTCAAAGTTCGTTACCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCCGT-TG
1 ATTTAC-TTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG-T-CGTGTG
* *
927390 CCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTGAGAGGAGCA
63 CCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* *
927450 ATTTACTTTTCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCCGT-T
1 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG-T-CGTGT
* *
927513 GCCTCTGTTTAGAGGAGCAATTTA-TTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
62 GCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
927573 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTACC
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGT-GTGCC
927638 TCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
65 TCTGTTTAGAGGAGCAATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
927694 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCC
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGT-GTGCC
* * *
927759 TCTGTTGAGAGGAGCAATTTATTTTTCCAAAGTCGTAGTGCCTCTGTTTAGAGGAGCA
65 TCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
927817 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGT
1 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTCGT-GT
* *
927881 ACCTCTGTTGAGAGGAGCAATTTACTTTT-CAAAGTTCCGT--TGCCTCTGTTTAGAGGAGCA
62 GCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAG-T-CGTGGTGCCTCTGTTTAGAGGAGCA
*
927941 ATTTAC-TTTCAAAAG-TCGTTGAGTCTCTGTTTAGAGGA
1 ATTTACTTTTC-AAAGTTCGTT--GCCTCTGTTTAGAGGA
927979 ACTTCGACCA
Statistics
Matches: 614, Mismatches: 18, Indels: 42
0.91 0.03 0.06
Matches are distributed among these distances:
120 3 0.00
121 112 0.18
122 76 0.12
123 105 0.17
124 229 0.37
125 83 0.14
126 6 0.01
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (122 bp):
ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGTGCCT
CTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
Found at i:927434 original size:83 final size:80
Alignment explanation
Indices: 927202--927978 Score: 1102
Period size: 83 Copynumber: 9.5 Consensus size: 80
927192 GTCTAGGAGT
*
927202 ATTTACTTTTCCAAGTTCGT-TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAG-TCGTGGT
1 ATTTACTTTTCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTTC-AAAGTTCGT--T
927265 GCCTCTGTTTAGAGGAGCA
62 GCCTCTGTTTAGAGGAGCA
*
927284 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTTCGTTA
1 ATTTACTTTTC-AAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTAC-TTTTCAAAGTTCGTTG
927349 CCTCTGTTTAGAGGAGCA
63 CCTCTGTTTAGAGGAGCA
*
927367 ATTTATTTTTCAAAGTTCCGT-TGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAG-TCGTGG
1 ATTTACTTTTCAAAG-T-CGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTTCGT--
* *
927430 TACCTCTGTTGAGAGGAGCA
61 TGCCTCTGTTTAGAGGAGCA
* *
927450 ATTTACTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCCGTTGC
1 ATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTT-CGTTGC
927515 CTCTGTTTAGAGGAGCA
64 CTCTGTTTAGAGGAGCA
* *
927532 ATTTATTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCC
1 ATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCC
927597 TCTGTTTAGAGGAGCA
65 TCTGTTTAGAGGAGCA
*
927613 ATTTACTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCC
1 ATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCC
927678 TCTGTTTAGAGGAGCA
65 TCTGTTTAGAGGAGCA
927694 ATTTACTTTTCAAAGTTCGT-TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG-TCGTGGTG
1 ATTTACTTTTCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGT--TG
*
927757 CCTCTGTTGAGAGGAGCA
63 CCTCTGTTTAGAGGAGCA
*
927775 ATTTATTTTTCCAAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG-TCGTGGT
1 ATTTACTTTT-CAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGT--T
927839 GCCTCTGTTTAGAGGAGCA
62 GCCTCTGTTTAGAGGAGCA
* *
927858 ATTTACTTTTCCAAAGTCGTGGTACCTCTGTTGAGAGGAGCAATTTACTTTTCAAAGTTCCGTTG
1 ATTTACTTTT-CAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTT-CGTTG
927923 CCTCTGTTTAGAGGAGCA
63 CCTCTGTTTAGAGGAGCA
* *
927941 ATTTAC-TTTCAAAAGTCGTTGAGTCTCTGTTTAGAGGA
1 ATTTACTTTTC-AAAGTCG-TGTGCCTCTGTTTAGAGGA
927979 ACTTCGACCA
Statistics
Matches: 647, Mismatches: 24, Indels: 48
0.90 0.03 0.07
Matches are distributed among these distances:
79 4 0.01
80 34 0.05
81 162 0.25
82 163 0.25
83 235 0.36
84 37 0.06
85 12 0.02
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (80 bp):
ATTTACTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCT
CTGTTTAGAGGAGCA
Found at i:928004 original size:10 final size:10
Alignment explanation
Indices: 927989--928050 Score: 65
Period size: 10 Copynumber: 5.9 Consensus size: 10
927979 ACTTCGACCA
927989 AAAAAAAAAC
1 AAAAAAAAAC
927999 AAAAAAAAAC
1 AAAAAAAAAC
928009 AAAAAAACAA-
1 AAAAAAA-AAC
928019 AAACAAAAAA-
1 AAA-AAAAAAC
928029 AATCAAAAAAATC
1 AA--AAAAAAA-C
928042 AAAAAAAAA
1 AAAAAAAAA
928051 ATCAAAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
10 24 0.52
11 19 0.41
12 1 0.02
13 2 0.04
ACGTcount: A:0.87, C:0.10, G:0.00, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:928020 original size:24 final size:24
Alignment explanation
Indices: 927988--928051 Score: 96
Period size: 24 Copynumber: 2.7 Consensus size: 24
927978 AACTTCGACC
927988 AAAAA-AAAAACAAAAAAAAACAA
1 AAAAACAAAAACAAAAAAAAACAA
*
928011 AAAAACAAAAACAAAAAAAATCAA
1 AAAAACAAAAACAAAAAAAAACAA
928035 AAAAATCAAAAA-AAAAA
1 AAAAA-CAAAAACAAAAA
928052 TCAAAAATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
23 5 0.13
24 27 0.71
25 6 0.16
ACGTcount: A:0.88, C:0.09, G:0.00, T:0.03
Consensus pattern (24 bp):
AAAAACAAAAACAAAAAAAAACAA
Found at i:928058 original size:9 final size:8
Alignment explanation
Indices: 927988--928048 Score: 65
Period size: 8 Copynumber: 7.8 Consensus size: 8
927978 AACTTCGACC
927988 AAAAAA-A
1 AAAAAACA
*
927995 AAACAA-A
1 AAAAAACA
928002 AAAAAACA
1 AAAAAACA
928010 AAAAAACA
1 AAAAAACA
928018 AAAACAA-A
1 AAAA-AACA
*
928026 AAAAATCA
1 AAAAAACA
928034 AAAAAATCA
1 AAAAAA-CA
928043 AAAAAA
1 AAAAAA
928049 AAATCAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
7 12 0.26
8 24 0.52
9 10 0.22
ACGTcount: A:0.87, C:0.10, G:0.00, T:0.03
Consensus pattern (8 bp):
AAAAAACA
Found at i:928058 original size:10 final size:9
Alignment explanation
Indices: 927990--928049 Score: 65
Period size: 9 Copynumber: 6.9 Consensus size: 9
927980 CTTCGACCAA
927990 AAAAAAAAC
1 AAAAAAAAC
927999 AAAAAAAA-
1 AAAAAAAAC
928007 ACAAAAAAAC
1 A-AAAAAAAC
928017 ---AAAAAC
1 AAAAAAAAC
928023 AAAAAAAATC
1 AAAAAAAA-C
*
928033 AAAAAAATC
1 AAAAAAAAC
928042 AAAAAAAA
1 AAAAAAAA
928050 AATCAAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
6 6 0.14
8 1 0.02
9 28 0.65
10 8 0.19
ACGTcount: A:0.87, C:0.10, G:0.00, T:0.03
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:928063 original size:24 final size:22
Alignment explanation
Indices: 927989--928063 Score: 84
Period size: 23 Copynumber: 3.4 Consensus size: 22
927979 ACTTCGACCA
927989 AAAAAAAAAC-AAAAAAAAA-C
1 AAAAAAAAACAAAAAAAAAATC
*
928009 AAAAAAACAAAAACAAAAAAAATC
1 AAAAAAA-AACAA-AAAAAAAATC
*
928033 -AAAAAAATCAAAAAAAAAATC
1 AAAAAAAAACAAAAAAAAAATC
928054 AAAAATAAAA
1 AAAAA-AAAA
928064 ATGTTGAGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
20 7 0.16
21 12 0.27
22 8 0.18
23 17 0.38
24 1 0.02
ACGTcount: A:0.85, C:0.09, G:0.00, T:0.05
Consensus pattern (22 bp):
AAAAAAAAACAAAAAAAAAATC
Found at i:928064 original size:1 final size:1
Alignment explanation
Indices: 927988--928051 Score: 56
Period size: 1 Copynumber: 64.0 Consensus size: 1
927978 AACTTCGACC
* * * * ** **
927988 AAAAAAAAAACAAAAAAAAACAAAAAAACAAAAACAAAAAAAATCAAAAAAATCAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
928052 TCAAAAATAA
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.88, C:0.09, G:0.00, T:0.03
Consensus pattern (1 bp):
A
Found at i:928289 original size:24 final size:23
Alignment explanation
Indices: 928234--928287 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 23
928224 TTTTCTTTTG
928234 TATTTTATGTATTCTATTATTAT
1 TATTTTATGTATTCTATTATTAT
928257 TATTATTATGTATATCT-TTATTCATT
1 TATT-TTATGTAT-TCTATTATT-A-T
928283 TATTT
1 TATTT
928288 ATTTTTATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
23 4 0.15
24 13 0.48
25 5 0.19
26 5 0.19
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.65
Consensus pattern (23 bp):
TATTTTATGTATTCTATTATTAT
Found at i:928346 original size:3 final size:3
Alignment explanation
Indices: 928338--928363 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
928328 AGTTATATAT
928338 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
928364 TTTGTAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:928842 original size:24 final size:23
Alignment explanation
Indices: 928798--928842 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
928788 TTATCAGAAA
* *
928798 TTTTTTGGGGATTTTTCGAAATT
1 TTTTTTGGGAATTTCTCGAAATT
*
928821 TTTTTCTGGGAATTTCTGGAAA
1 TTTTT-TGGGAATTTCTCGAAA
928843 ATTCCAGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 5 0.28
24 13 0.72
ACGTcount: A:0.20, C:0.07, G:0.22, T:0.51
Consensus pattern (23 bp):
TTTTTTGGGAATTTCTCGAAATT
Found at i:928959 original size:20 final size:20
Alignment explanation
Indices: 928936--928977 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
928926 GCCCAGTTTT
*
928936 CGGCGAAGTATCCCAGAAAC
1 CGGCGAAGAATCCCAGAAAC
928956 CGGCGAAGAATCCCAGAAAC
1 CGGCGAAGAATCCCAGAAAC
928976 CG
1 CG
928978 TCAAATTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.31, G:0.26, T:0.07
Consensus pattern (20 bp):
CGGCGAAGAATCCCAGAAAC
Found at i:929039 original size:20 final size:20
Alignment explanation
Indices: 928996--929040 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
928986 CCGGCCAACT
*
928996 TCCGGCGAAAAAACCCAGAT
1 TCCGGCGAAAAAACCCAGAA
***
929016 TCCGGCGAAAATTTCCAGAA
1 TCCGGCGAAAAAACCCAGAA
929036 TCCGG
1 TCCGG
929041 TGAATCTTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (20 bp):
TCCGGCGAAAAAACCCAGAA
Found at i:929409 original size:15 final size:15
Alignment explanation
Indices: 929376--929419 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
929366 GCTCCAGGTT
***
929376 TTTTTTTTTTTTTTT
1 TTTTTTTTTTTTGAA
929391 TTTTTTTTTTTTGAA
1 TTTTTTTTTTTTGAA
*
929406 TTTTTTTTATTTGA
1 TTTTTTTTTTTTGA
929420 CTTTGATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.09, C:0.00, G:0.05, T:0.86
Consensus pattern (15 bp):
TTTTTTTTTTTTGAA
Found at i:929413 original size:1 final size:1
Alignment explanation
Indices: 929374--929402 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
929364 CCGCTCCAGG
929374 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
929403 GAATTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:929734 original size:156 final size:156
Alignment explanation
Indices: 929449--929908 Score: 841
Period size: 156 Copynumber: 2.9 Consensus size: 156
929439 TTTTTTTTCT
* *
929449 TTTTTCTTT-AATCAATCCGACGACGGAGCCTCTACAAGTAAAAACAGTAGTTTTTCTTGCATAC
1 TTTTTCTTTAAAT-AATCCGACGACGGAGCCTCTGCAAGT-GAAACAGTAGTTTTTCTTGCATAC
929513 TCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTT
64 TCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTT
929578 CGATAATTAATTAATTGGTTGATCTTGA
129 CGATAATTAATTAATTGGTTGATCTTGA
929606 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
929671 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
66 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
929736 ATAATTAATTAATTGGTTGATCTTGA
131 ATAATTAATTAATTGGTTGATCTTGA
929762 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
* *
929827 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCA
66 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
* *
929892 ATAACTAATTACTTGGT
131 ATAATTAATTAATTGGT
929909 AAAATTTTAA
Statistics
Matches: 296, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
156 259 0.88
157 34 0.11
158 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.38
Consensus pattern (156 bp):
TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
ATAATTAATTAATTGGTTGATCTTGA
Found at i:933848 original size:36 final size:35
Alignment explanation
Indices: 933794--933962 Score: 119
Period size: 36 Copynumber: 4.7 Consensus size: 35
933784 ATTTCTATAG
* *
933794 TTTCTTGACTTGCAGTTTAATCCTAGTCACTTTTATT
1 TTTC-TGACTTGCGGTTTAATCCCAGTC-CTTTTATT
* * *
933831 TTTCTAACTTGCGGTTTAGTCCCAGT-CTTCATTAGT
1 TTTCTGACTTGCGGTTTAATCCCAGTCCTT--TTATT
* * * * *
933867 CTT-TGACTTGTGCTTCAA-CCCTGATCCTTTCTATAGT
1 TTTCTGACTTGCGGTTTAATCCCAG-TCCTTT-TAT--T
*
933904 TTTCTGACTTGCAGTTTAATCCCAGTCACTTTTATT
1 TTTCTGACTTGCGGTTTAATCCCAGTC-CTTTTATT
* *
933940 TCTCTGACTTGCGATTTAATCCC
1 TTTCTGACTTGCGGTTTAATCCC
933963 GATCTTTTTA
Statistics
Matches: 100, Mismatches: 22, Indels: 21
0.70 0.15 0.15
Matches are distributed among these distances:
34 8 0.08
35 13 0.13
36 48 0.48
37 7 0.07
38 16 0.16
39 8 0.08
ACGTcount: A:0.18, C:0.24, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTCTGACTTGCGGTTTAATCCCAGTCCTTTTATT
Found at i:933993 original size:109 final size:108
Alignment explanation
Indices: 933770--933993 Score: 274
Period size: 109 Copynumber: 2.1 Consensus size: 108
933760 CCCGATTCAT
* * *
933770 GGTTCAATCCTGTCATTTCTATAGTTTCTTGACTTGCAGTTTAATCCTAGTCACTTTTATTTTTC
1 GGTTCAACCCTGTCATTTCTATAGTTTCTTGACTTGCAGTTTAATCCCAGTCACTTTTATTTCTC
* * * * *
933835 TAACTTGCGGTTTAGTCCCAGTCTTCATTAGTCTTTGACTTGT
66 TAACTTGCGATTTAATCCCAGTCTTCATTAGTCTTTCACTCGC
* *
933878 GCTTCAACCCTGATCCTTTCTATAGTTT-TCTGACTTGCAGTTTAATCCCAGTCACTTTTATTTC
1 GGTTCAACCCTG-TCATTTCTATAGTTTCT-TGACTTGCAGTTTAATCCCAGTCACTTTTATTTC
* * *
933942 TCTGACTTGCGATTTAATCCC-GATCTT-TTTATGTTTTTCACTCGC
64 TCTAACTTGCGATTTAATCCCAG-TCTTCATTA-GTCTTTCACTCGC
933987 GGTTCAA
1 GGTTCAA
933994 TCTCGGTCTC
Statistics
Matches: 98, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
108 15 0.15
109 83 0.85
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.46
Consensus pattern (108 bp):
GGTTCAACCCTGTCATTTCTATAGTTTCTTGACTTGCAGTTTAATCCCAGTCACTTTTATTTCTC
TAACTTGCGATTTAATCCCAGTCTTCATTAGTCTTTCACTCGC
Found at i:934097 original size:35 final size:35
Alignment explanation
Indices: 934058--934126 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
934048 TGACTTGCAA
*
934058 TTTAATCCCTA-TCTCTTTATTTTCTTAACTTGTGG
1 TTTAAT-CCTAGTCTCCTTATTTTCTTAACTTGTGG
* *
934093 TTTAATCCTAGTCTCCTTATTTTTTTGACTTGTG
1 TTTAATCCTAGTCTCCTTATTTTCTTAACTTGTG
934127 ATTCAATCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 4 0.13
35 26 0.87
ACGTcount: A:0.16, C:0.19, G:0.10, T:0.55
Consensus pattern (35 bp):
TTTAATCCTAGTCTCCTTATTTTCTTAACTTGTGG
Found at i:934266 original size:35 final size:36
Alignment explanation
Indices: 934149--934271 Score: 167
Period size: 36 Copynumber: 3.4 Consensus size: 36
934139 TTCAATTCCA
* *
934149 ATCGATTCTTTAATTTCGATTTGCAGTGTTATCCTG
1 ATCGATTCTTTAATTTTGATTTGCAGTGTTATCCCG
* * * * *
934185 ATTGATTATTTAATTTTGATTTACGGTGTTATCCGG
1 ATCGATTCTTTAATTTTGATTTGCAGTGTTATCCCG
*
934221 ATCGATTCTTTAATTTTGATTTGCAGT-TTGTCCCG
1 ATCGATTCTTTAATTTTGATTTGCAGTGTTATCCCG
934256 ATCGATTCTTTAATTT
1 ATCGATTCTTTAATTT
934272 CGACTCACGG
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
35 22 0.29
36 53 0.71
ACGTcount: A:0.20, C:0.14, G:0.16, T:0.50
Consensus pattern (36 bp):
ATCGATTCTTTAATTTTGATTTGCAGTGTTATCCCG
Found at i:934322 original size:37 final size:36
Alignment explanation
Indices: 934149--934326 Score: 162
Period size: 36 Copynumber: 4.9 Consensus size: 36
934139 TTCAATTCCA
* * *
934149 ATCGATTCTTTAATTTCGATTTGCAGTGTTATCCTG
1 ATCGATTCTTTAATTTCGACTTGCAGTGTTGTCCCG
* * * * * * * *
934185 ATTGATTATTTAATTTTGATTTACGGTGTTATCCGG
1 ATCGATTCTTTAATTTCGACTTGCAGTGTTGTCCCG
* *
934221 ATCGATTCTTTAATTTTGATTTGCAGT-TTGTCCCG
1 ATCGATTCTTTAATTTCGACTTGCAGTGTTGTCCCG
** * *
934256 ATCGATTCTTTAATTTCGACTCACGGTGTTGTCTCG
1 ATCGATTCTTTAATTTCGACTTGCAGTGTTGTCCCG
*
934292 ATCGATT-TTTTATTCCTCGACTTGCAGTGTTGTCC
1 ATCGATTCTTTAATT--TCGACTTGCAGTGTTGTCC
934327 TAGTCAACTT
Statistics
Matches: 116, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
35 34 0.29
36 67 0.58
37 15 0.13
ACGTcount: A:0.18, C:0.17, G:0.18, T:0.47
Consensus pattern (36 bp):
ATCGATTCTTTAATTTCGACTTGCAGTGTTGTCCCG
Found at i:934575 original size:15 final size:15
Alignment explanation
Indices: 934552--934586 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
934542 AATTCTTGGT
934552 TAATATTAATAATAA
1 TAATATTAATAATAA
*
934567 TAATTTTAATAATAA
1 TAATATTAATAATAA
934582 TAATA
1 TAATA
934587 ATATTGGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TAATATTAATAATAA
Found at i:935717 original size:13 final size:13
Alignment explanation
Indices: 935692--935736 Score: 56
Period size: 15 Copynumber: 3.3 Consensus size: 13
935682 TTTTTTCAAA
935692 TTTTTTTAT-TAT
1 TTTTTTTATATAT
935704 TTTTTTTATATAT
1 TTTTTTTATATAT
935717 TATTTATTTATATCAT
1 T-TTT-TTTATAT-AT
935733 TTTT
1 TTTT
935737 AACATTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.31
13 4 0.14
14 3 0.10
15 10 0.34
16 3 0.10
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTTTATATAT
Found at i:935920 original size:3 final size:3
Alignment explanation
Indices: 935914--935938 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
935904 CCAAGAATTA
935914 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
935939 TCAAAATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:936048 original size:10 final size:11
Alignment explanation
Indices: 936030--936070 Score: 59
Period size: 10 Copynumber: 3.9 Consensus size: 11
936020 TATTATTGAA
*
936030 AATAATAAA-T
1 AATATTAAATT
936040 AATATTAAATT
1 AATATTAAATT
936051 AA-ATTAAATT
1 AATATTAAATT
936061 AATATTAAAT
1 AATATTAAAT
936071 CTTTGTAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATTAAATT
Found at i:936239 original size:28 final size:29
Alignment explanation
Indices: 936208--936268 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
936198 AAAAAATCTC
* * *
936208 AACCATAAAATCAAAACCTCAAA-CTTTA
1 AACCATAAAAACAAAACCCCAAACCGTTA
* *
936236 AACCCTAAAAACGAAACCCCAAACCGTTA
1 AACCATAAAAACAAAACCCCAAACCGTTA
936265 AACC
1 AACC
936269 TTACATTAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.51, C:0.31, G:0.03, T:0.15
Consensus pattern (29 bp):
AACCATAAAAACAAAACCCCAAACCGTTA
Found at i:936294 original size:27 final size:26
Alignment explanation
Indices: 936249--936343 Score: 82
Period size: 27 Copynumber: 3.5 Consensus size: 26
936239 CCTAAAAACG
* * *
936249 AAACCCCAAACCGTTAAACCTTACATT
1 AAACCCTAAACC-TCAAACCTTAAATT
* **
936276 AAACCCTAAACCTCCAAACCCTAAAAACG
1 AAACCCTAAACCT-CAAA-CCT-TAAATT
*
936305 AAACCCTAAACACTCTAACCTTAAATT
1 AAACCCTAAAC-CTCAAACCTTAAATT
936332 AAACCCTAAACC
1 AAACCCTAAACC
936344 ATCTGAAACT
Statistics
Matches: 54, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
26 2 0.04
27 28 0.52
28 6 0.11
29 16 0.30
30 2 0.04
ACGTcount: A:0.45, C:0.35, G:0.02, T:0.18
Consensus pattern (26 bp):
AAACCCTAAACCTCAAACCTTAAATT
Found at i:936295 original size:56 final size:56
Alignment explanation
Indices: 936235--936343 Score: 168
Period size: 56 Copynumber: 1.9 Consensus size: 56
936225 CTCAAACTTT
*
936235 AAACCCTAAAAACGAAACCCCAAAC-CGT-TAAACCTTACATTAAACCCTAAACCTCC
1 AAACCCTAAAAACGAAACCCCAAACAC-TCT-AACCTTAAATTAAACCCTAAACCTCC
*
936291 AAACCCTAAAAACGAAACCCTAAACACTCTAACCTTAAATTAAACCCTAAACC
1 AAACCCTAAAAACGAAACCCCAAACACTCTAACCTTAAATTAAACCCTAAACC
936344 ATCTGAAACT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
56 47 0.96
57 2 0.04
ACGTcount: A:0.47, C:0.34, G:0.03, T:0.17
Consensus pattern (56 bp):
AAACCCTAAAAACGAAACCCCAAACACTCTAACCTTAAATTAAACCCTAAACCTCC
Found at i:943974 original size:14 final size:14
Alignment explanation
Indices: 943957--944083 Score: 58
Period size: 14 Copynumber: 8.6 Consensus size: 14
943947 ATTGAGGTTT
943957 AGGGTTTTGATTTA
1 AGGGTTTTGATTTA
* * *
943971 AGGGTTTAGTTTTT
1 AGGGTTTTGATTTA
*
943985 AGGAGTTTTGAATTTT
1 AGG-GTTTTG-ATTTA
* *
944001 GGGGTTTGGATTTA
1 AGGGTTTTGATTTA
* **
944015 AAGGTTGGGATTT-
1 AGGGTTTTGATTTA
*
944028 AGGGTTTCAGATTTTA
1 AGGGTTT-TGA-TTTA
* *
944044 GGGAGTTTGGATTTA
1 AGG-GTTTTGATTTA
944059 AGGGATTTTGGATTTTA
1 AGGG-TTTT-GA-TTTA
*
944076 GGGGTTTT
1 AGGGTTTT
944084 AGAATCCTAA
Statistics
Matches: 85, Mismatches: 19, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
13 5 0.06
14 31 0.36
15 22 0.26
16 16 0.19
17 11 0.13
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.46
Consensus pattern (14 bp):
AGGGTTTTGATTTA
Found at i:944013 original size:44 final size:43
Alignment explanation
Indices: 943954--944062 Score: 107
Period size: 44 Copynumber: 2.5 Consensus size: 43
943944 AAAATTGAGG
* ** *
943954 TTTA-GGGTTTTGATTTAAGGGTTTAGTTTTTAGGAGTTT-TGAAT
1 TTTAGGGGTTTGGATTTAAGGG-TTAGGATTTAGG-GTTTCAG-AT
* *
943998 TTT-GGGGTTTGGATTTAAAGGTTGGGATTTAGGGTTTCAGAT
1 TTTAGGGGTTTGGATTTAAGGGTTAGGATTTAGGGTTTCAGAT
944040 TTTAGGGAGTTTGGATTTAAGGG
1 TTTAGGG-GTTTGGATTTAAGGG
944063 ATTTTGGATT
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
42 9 0.17
43 13 0.24
44 32 0.59
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.46
Consensus pattern (43 bp):
TTTAGGGGTTTGGATTTAAGGGTTAGGATTTAGGGTTTCAGAT
Found at i:944083 original size:16 final size:16
Alignment explanation
Indices: 943981--944083 Score: 67
Period size: 16 Copynumber: 6.8 Consensus size: 16
943971 AGGGTTTAGT
* *
943981 TTTTAGGAGTTTTGAA
1 TTTTAGGGGTTTTGGA
943997 TTTT-GGGG-TTTGGA
1 TTTTAGGGGTTTTGGA
** *
944011 -TTTAAAGG-TTGGGA
1 TTTTAGGGGTTTTGGA
**
944025 -TTTA-GGGTTTCAGA
1 TTTTAGGGGTTTTGGA
944039 TTTTAGGGAG-TTTGGA
1 TTTTAGGG-GTTTTGGA
* *
944055 TTTAAGGGATTTTGGA
1 TTTTAGGGGTTTTGGA
944071 TTTTAGGGGTTTT
1 TTTTAGGGGTTTT
944084 AGAATCCTAA
Statistics
Matches: 67, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
13 5 0.07
14 20 0.30
15 7 0.10
16 34 0.51
17 1 0.01
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (16 bp):
TTTTAGGGGTTTTGGA
Found at i:946048 original size:11 final size:11
Alignment explanation
Indices: 946032--946057 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
946022 CATTCTGATG
946032 AATGACTAATT
1 AATGACTAATT
946043 AATGACTAATT
1 AATGACTAATT
946054 AATG
1 AATG
946058 TAAAGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (11 bp):
AATGACTAATT
Found at i:947441 original size:28 final size:28
Alignment explanation
Indices: 947397--947452 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
947387 CAAATTGAGT
947397 GCTTAAACACAGCTGTTCTATATCACAG
1 GCTTAAACACAGCTGTTCTATATCACAG
* * *
947425 GCTTAAACACTGTTGTTCTATATTACAG
1 GCTTAAACACAGCTGTTCTATATCACAG
947453 CCGATTCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.34
Consensus pattern (28 bp):
GCTTAAACACAGCTGTTCTATATCACAG
Found at i:950250 original size:72 final size:72
Alignment explanation
Indices: 950152--950379 Score: 350
Period size: 72 Copynumber: 3.2 Consensus size: 72
950142 CACAAGCTTC
* * * *
950152 GTCATGTTTCCAATTGAAGCAGGGATTGAACCAGAAAACATATTTTGATCAAGGTAGAGAGTAGA
1 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
* *
950217 TAAGGTT
66 TAAGCTG
* * * *
950224 GTCAATTTTCCTATGGAAGCAGGGATTGAACCAGAGAACATATTTAGAGGAAGG-ACGAGAGTAG
1 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTA-GAGAGTAG
950288 ATAAGCTG
65 ATAAGCTG
950296 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
1 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
950361 TAAGCTG
66 TAAGCTG
950368 GTCAAGTTTCCT
1 GTCAAGTTTCCT
950380 NNNNNNNNNN
Statistics
Matches: 140, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
71 1 0.01
72 138 0.99
73 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (72 bp):
GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
TAAGCTG
Found at i:951833 original size:21 final size:21
Alignment explanation
Indices: 951809--951858 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
951799 TTTTTGGGAA
951809 GTAGCCAAGTACCCTGAATGG
1 GTAGCCAAGTACCCTGAATGG
951830 GTAGCCAAGTACCCTGAATGG
1 GTAGCCAAGTACCCTGAATGG
951851 GTAGCCAA
1 GTAGCCAA
951859 TATAGTCCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.24, G:0.28, T:0.18
Consensus pattern (21 bp):
GTAGCCAAGTACCCTGAATGG
Found at i:956061 original size:36 final size:35
Alignment explanation
Indices: 955907--956075 Score: 98
Period size: 36 Copynumber: 4.7 Consensus size: 35
955897 ATTTCTATAG
* *
955907 TTTCT-TGACATGCAGTTTAATCCTAGTCACTTTTA
1 TTTCTCTGACTTGCAGTTTAATCCCAGTC-CTTTTA
* * * *
955942 TTTTTCTAACTTGCGGTTTAGTCCCAGT-CTTCATTA
1 TTTCTCTGACTTGCAGTTTAATCCCAGTCCTT--TTA
* * * * *
955978 -GTCTTTGACTTG-TGCTTCAA-CCCTGATCCTTTCTA
1 TTTCTCTGACTTGCAG-TTTAATCCCAG-TCCTTT-TA
*
956013 TAGTTTTCTGACTTGCAGTTTAATCCCAGTCACTTTTA
1 T--TTCTCTGACTTGCAGTTTAATCCCAGTC-CTTTTA
956051 TTTCTCTGACTTGC-GATTTAATCCC
1 TTTCTCTGACTTGCAG-TTTAATCCC
956076 GATCTTTTTA
Statistics
Matches: 99, Mismatches: 21, Indels: 27
0.67 0.14 0.18
Matches are distributed among these distances:
34 9 0.09
35 19 0.19
36 44 0.44
38 18 0.18
39 9 0.09
ACGTcount: A:0.18, C:0.24, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTCTCTGACTTGCAGTTTAATCCCAGTCCTTTTA
Found at i:956106 original size:109 final size:108
Alignment explanation
Indices: 955883--956106 Score: 265
Period size: 109 Copynumber: 2.1 Consensus size: 108
955873 CCCGATTCAT
* * *
955883 GGTTCAATCCTGTCATTTCTATAGTTTCTTGACATGCAGTTTAATCCTAGTCACTTTTATTTTTC
1 GGTTCAACCCTGTCATTTCTATAGTTTCTTGACATGCAGTTTAATCCCAGTCACTTTTATTTCTC
* * * * *
955948 TAACTTGCGGTTTAGTCCCAGTCTTCATTAGTCTTTGACTTGT
66 TAACTTGCGATTTAATCCCAGTCTTCATTAGTCTTTCACTCGC
* * *
955991 GCTTCAACCCTGATCCTTTCTATAGTTT-TCTGACTTGCAGTTTAATCCCAGTCACTTTTATTTC
1 GGTTCAACCCTG-TCATTTCTATAGTTTCT-TGACATGCAGTTTAATCCCAGTCACTTTTATTTC
* * *
956055 TCTGACTTGCGATTTAATCCC-GATCTT-TTTATGTTTTTCACTCGC
64 TCTAACTTGCGATTTAATCCCAG-TCTTCATTA-GTCTTTCACTCGC
956100 GGTTCAA
1 GGTTCAA
956107 TCTCGGTCTC
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
108 15 0.15
109 82 0.85
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.45
Consensus pattern (108 bp):
GGTTCAACCCTGTCATTTCTATAGTTTCTTGACATGCAGTTTAATCCCAGTCACTTTTATTTCTC
TAACTTGCGATTTAATCCCAGTCTTCATTAGTCTTTCACTCGC
Found at i:956210 original size:35 final size:35
Alignment explanation
Indices: 956171--956239 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
956161 TGACTTGCAA
*
956171 TTTAATCCCTA-TCTCTTTATTTTCTTAACTTGTGG
1 TTTAAT-CCTAGTCTCCTTATTTTCTTAACTTGTGG
* *
956206 TTTAATCCTAGTCTCCTTATTTTTTTGACTTGTG
1 TTTAATCCTAGTCTCCTTATTTTCTTAACTTGTG
956240 ATTCAATCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 4 0.13
35 26 0.87
ACGTcount: A:0.16, C:0.19, G:0.10, T:0.55
Consensus pattern (35 bp):
TTTAATCCTAGTCTCCTTATTTTCTTAACTTGTGG
Found at i:956379 original size:35 final size:36
Alignment explanation
Indices: 956262--956384 Score: 167
Period size: 36 Copynumber: 3.4 Consensus size: 36
956252 TTCAATTCCA
* *
956262 ATCGATTCTTTAATTTCGATTTGCAGTGTTATCCTG
1 ATCGATTCTTTAATTTTGATTTGCAGTGTTATCCCG
* * * * *
956298 ATTGATTATTTAATTTTGATTTACGGTGTTATCCGG
1 ATCGATTCTTTAATTTTGATTTGCAGTGTTATCCCG
*
956334 ATCGATTCTTTAATTTTGATTTGCAGT-TTGTCCCG
1 ATCGATTCTTTAATTTTGATTTGCAGTGTTATCCCG
956369 ATCGATTCTTTAATTT
1 ATCGATTCTTTAATTT
956385 CGACTCACGG
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
35 22 0.29
36 53 0.71
ACGTcount: A:0.20, C:0.14, G:0.16, T:0.50
Consensus pattern (36 bp):
ATCGATTCTTTAATTTTGATTTGCAGTGTTATCCCG
Found at i:956435 original size:37 final size:36
Alignment explanation
Indices: 956262--956439 Score: 162
Period size: 36 Copynumber: 4.9 Consensus size: 36
956252 TTCAATTCCA
* * *
956262 ATCGATTCTTTAATTTCGATTTGCAGTGTTATCCTG
1 ATCGATTCTTTAATTTCGACTTGCAGTGTTGTCCCG
* * * * * * * *
956298 ATTGATTATTTAATTTTGATTTACGGTGTTATCCGG
1 ATCGATTCTTTAATTTCGACTTGCAGTGTTGTCCCG
* *
956334 ATCGATTCTTTAATTTTGATTTGCAGT-TTGTCCCG
1 ATCGATTCTTTAATTTCGACTTGCAGTGTTGTCCCG
** * *
956369 ATCGATTCTTTAATTTCGACTCACGGTGTTGTCTCG
1 ATCGATTCTTTAATTTCGACTTGCAGTGTTGTCCCG
*
956405 ATCGATT-TTTTATTCCTCGACTTGCAGTGTTGTCC
1 ATCGATTCTTTAATT--TCGACTTGCAGTGTTGTCC
956440 TAGTCAACTT
Statistics
Matches: 116, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
35 34 0.29
36 67 0.58
37 15 0.13
ACGTcount: A:0.18, C:0.17, G:0.18, T:0.47
Consensus pattern (36 bp):
ATCGATTCTTTAATTTCGACTTGCAGTGTTGTCCCG
Found at i:956688 original size:15 final size:15
Alignment explanation
Indices: 956665--956699 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
956655 AATTCTTGGT
956665 TAATATTAATAATAA
1 TAATATTAATAATAA
*
956680 TAATTTTAATAATAA
1 TAATATTAATAATAA
956695 TAATA
1 TAATA
956700 ATATTGGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TAATATTAATAATAA
Found at i:957834 original size:13 final size:13
Alignment explanation
Indices: 957807--957853 Score: 60
Period size: 12 Copynumber: 3.5 Consensus size: 13
957797 TTTTTTTCAA
957807 ATTTTTTTTAT-T
1 ATTTTTTTTATAT
957819 ATTTTTTTTATAT
1 ATTTTTTTTATAT
957832 ATTATTTATTTATAT
1 ATT-TTT-TTTATAT
957847 CATTTTT
1 -ATTTTT
957854 AACATTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 11 0.35
13 4 0.13
14 3 0.10
15 10 0.32
16 3 0.10
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (13 bp):
ATTTTTTTTATAT
Found at i:958038 original size:3 final size:3
Alignment explanation
Indices: 958032--958056 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
958022 CCAAGAATTA
958032 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
958057 TCAAAATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:958173 original size:19 final size:20
Alignment explanation
Indices: 958135--958188 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
958125 AGATGTTGAG
*
958135 AAATTATTATTGAAAATAA-T
1 AAATTAATATT-AAAATAATT
958155 AAA-TAATATTAAAATTAATT
1 AAATTAATATTAAAA-TAATT
958175 AAATTAATATTAAA
1 AAATTAATATTAAA
958189 TCTTTGTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 4 0.13
19 9 0.30
20 7 0.23
21 10 0.33
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
AAATTAATATTAAAATAATT
Found at i:958360 original size:29 final size:29
Alignment explanation
Indices: 958328--958389 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
958318 AAAAAATCTC
* * *
958328 AACCATAAAATCAAAACCTCAAACCTTTA
1 AACCATAAAAACAAAACCCCAAACCGTTA
* *
958357 AACCCTAAAAACGAAACCCCAAACCGTTA
1 AACCATAAAAACAAAACCCCAAACCGTTA
958386 AACC
1 AACC
958390 TTACATTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.50, C:0.32, G:0.03, T:0.15
Consensus pattern (29 bp):
AACCATAAAAACAAAACCCCAAACCGTTA
Found at i:958408 original size:56 final size:57
Alignment explanation
Indices: 958356--958465 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 57
958346 TCAAACCTTT
* *
958356 AAACCCTAAAAACGAAACCCCAAAC-CGT-TAAACCTTACATTAAACCCTAAACCTCC
1 AAACCCTAAAAACAAAACCCCAAACAC-TCTAAACCTTAAATTAAACCCTAAACCTCC
*
958412 AAACCCTAAAAACAAAACCCTAAACACTCTAAACCTTAAATTAAACCCTAAACC
1 AAACCCTAAAAACAAAACCCCAAACACTCTAAACCTTAAATTAAACCCTAAACC
958466 ATCTGAAACT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
56 24 0.49
57 25 0.51
ACGTcount: A:0.48, C:0.34, G:0.02, T:0.16
Consensus pattern (57 bp):
AAACCCTAAAAACAAAACCCCAAACACTCTAAACCTTAAATTAAACCCTAAACCTCC
Found at i:966131 original size:44 final size:43
Alignment explanation
Indices: 966056--966161 Score: 108
Period size: 44 Copynumber: 2.4 Consensus size: 43
966046 AAAATTGAGG
* * ** **
966056 TTTA-GGGTTTTGATTTAAGGGTTAGTTTTTAGGAGTTTTTGAAT
1 TTTAGGGGTTTGGATTTAAAGGTTAGGATTTAGG-GTTTCAG-AT
*
966100 TTT-GGGGTTTGGATTTAAAGGTTGGGATTTAGGGTTTCAGAT
1 TTTAGGGGTTTGGATTTAAAGGTTAGGATTTAGGGTTTCAGAT
966142 TTTAGGGAGTTTGGATTTAA
1 TTTAGGG-GTTTGGATTTAA
966162 GGGATTTTGG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
42 5 0.10
43 8 0.15
44 39 0.75
ACGTcount: A:0.21, C:0.01, G:0.31, T:0.47
Consensus pattern (43 bp):
TTTAGGGGTTTGGATTTAAAGGTTAGGATTTAGGGTTTCAGAT
Found at i:966164 original size:16 final size:16
Alignment explanation
Indices: 966139--966184 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
966129 TAGGGTTTCA
966139 GATTTTAGGGAGTTTG
1 GATTTTAGGGAGTTTG
* *
966155 GATTTAAGGGATTTTG
1 GATTTTAGGGAGTTTG
966171 GATTTTAGGG-GTTT
1 GATTTTAGGGAGTTT
966185 TAGAATCCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 3 0.12
16 23 0.88
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.46
Consensus pattern (16 bp):
GATTTTAGGGAGTTTG
Found at i:968145 original size:11 final size:11
Alignment explanation
Indices: 968129--968154 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
968119 CATTCTGATG
968129 AATGACTAATT
1 AATGACTAATT
968140 AATGACTAATT
1 AATGACTAATT
968151 AATG
1 AATG
968155 TAAAGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (11 bp):
AATGACTAATT
Found at i:969537 original size:28 final size:28
Alignment explanation
Indices: 969493--969548 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
969483 CAAATTGAGT
969493 GCTTAAACACAGCTGTTCTATATCACAG
1 GCTTAAACACAGCTGTTCTATATCACAG
* * *
969521 GCTTAAACACTGTTGTTCTATATTACAG
1 GCTTAAACACAGCTGTTCTATATCACAG
969549 CCGATTCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.34
Consensus pattern (28 bp):
GCTTAAACACAGCTGTTCTATATCACAG
Found at i:972340 original size:72 final size:72
Alignment explanation
Indices: 972242--972491 Score: 378
Period size: 72 Copynumber: 3.5 Consensus size: 72
972232 CACAAGCTTC
* * * *
972242 GTCATGTTTCCAATTGAAGCAGGGATTGAACCAGAAAACATATTTTGATCAAGGTAGAGAGTAGA
1 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
* *
972307 TAAGGTT
66 TAAGCTG
* * * *
972314 GTCAATTTTCCTATGGAAGCAGGGATTGAACCAGAGAACATATTTAGAGGAAGG-ACGAGAGTAG
1 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTA-GAGAGTAG
972378 ATAAGCTG
65 ATAAGCTG
972386 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
1 GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
972451 TAAGCTG
66 TAAGCTG
972458 GTCAAGTTTCCTATGGAAGCAGGGA-TGACACCAG
1 GTCAAGTTTCCTATGGAAGCAGGGATTGA-ACCAG
972492 TGAGATTATT
Statistics
Matches: 161, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
71 4 0.02
72 156 0.97
73 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (72 bp):
GTCAAGTTTCCTATGGAAGCAGGGATTGAACCAGAAAACATATTTTGATGAAGGTAGAGAGTAGA
TAAGCTG
Found at i:974218 original size:18 final size:18
Alignment explanation
Indices: 974195--974233 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
974185 TACTTAGCTA
* * *
974195 ATTTTTTTATTAATATAT
1 ATTTTTTCAATAAAATAT
974213 ATTTTTTCAATAAAATAT
1 ATTTTTTCAATAAAATAT
974231 ATT
1 ATT
974234 AATTTTAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTTTCAATAAAATAT
Found at i:975534 original size:17 final size:17
Alignment explanation
Indices: 975492--975534 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
975482 ATTTAGTTAT
*
975492 TAATTTTTATATAATAA
1 TAATTTTTATAAAATAA
**
975509 TAAAATTTATAAAATAA
1 TAATTTTTATAAAATAA
975526 TAATTTTTA
1 TAATTTTTA
975535 ATTTATAATA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATTTTTATAAAATAA
Found at i:976747 original size:3 final size:3
Alignment explanation
Indices: 976739--976782 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
976729 GGCTCAATCT
976739 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
976783 TCTTTCATTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:977575 original size:24 final size:25
Alignment explanation
Indices: 977521--977575 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 25
977511 GGTTTCCTTT
*
977521 TTATTTTATTTTATTTTTCATTTAC
1 TTATTTTATTTTATTTTACATTTAC
* * *
977546 AT-TTTTA-TTTATTTTAGATTTTC
1 TTATTTTATTTTATTTTACATTTAC
977569 TTATTTT
1 TTATTTT
977576 CTATTTCATT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
23 14 0.58
24 9 0.38
25 1 0.04
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (25 bp):
TTATTTTATTTTATTTTACATTTAC
Found at i:980091 original size:81 final size:81
Alignment explanation
Indices: 979989--980204 Score: 208
Period size: 81 Copynumber: 2.7 Consensus size: 81
979979 AATATGGAGT
* * * *
979989 CATCCATTTC-TTTTGGTCTCTCATTTCTATCGTGTTCATGGTAT-C-AATTAAATTATTGACCA
1 CATCCATTTCTTTTTGGCCTCTCATTTCTAACGTATTCAT-G-ATGCTAATTAAATTACTGACCA
980051 AAGGATACCCAATAATTG
64 AAGGATACCCAATAATTG
* * * * **
980069 CATGCATTTCTTTTTGGCCTCTCATTTTTAACGTATTTATGATGCTAATTAAATTACTGGCTGAA
1 CATCCATTTCTTTTTGGCCTCTCATTTCTAACGTATTCATGATGCTAATTAAATTACTGACCAAA
**
980134 GGATATGCAATAATTG
66 GGATACCCAATAATTG
* * * * **
980150 CATCCATTTC-TTTTGACTTCTCATTTTTAACGTGTAGAT-AGTGCTAATTAAATTA
1 CATCCATTTCTTTTTGGCCTCTCATTTCTAACGTATTCATGA-TGCTAATTAAATTA
980205 TTGGTCGAAG
Statistics
Matches: 114, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
79 3 0.03
80 49 0.43
81 62 0.54
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.42
Consensus pattern (81 bp):
CATCCATTTCTTTTTGGCCTCTCATTTCTAACGTATTCATGATGCTAATTAAATTACTGACCAAA
GGATACCCAATAATTG
Found at i:980215 original size:80 final size:80
Alignment explanation
Indices: 980034--980221 Score: 227
Period size: 80 Copynumber: 2.3 Consensus size: 80
980024 TCATGGTATC
* * ** * *
980034 AATTAAATTATTGACCAAAGGATACCCAATAATTGCATGCATTTCTTTTTGGCCTCTCATTTTTA
1 AATTAAATTATTG-GCGAAGGATATGCAATAATTGCATCCATTTCTTTTTGACCTCTCATTTTTA
**
980099 ACGTATTTATGATGCT
65 ACGTATAGATGATGCT
* *
980115 AATTAAATTACTGGCTGAAGGATATGCAATAATTGCATCCATTTC-TTTTGACTTCTCATTTTTA
1 AATTAAATTATTGGC-GAAGGATATGCAATAATTGCATCCATTTCTTTTTGACCTCTCATTTTTA
*
980179 ACGTGTAGAT-AGTGCT
65 ACGTATAGATGA-TGCT
980195 AATTAAATTATTGGTCGAAGGATATGC
1 AATTAAATTATTGG-CGAAGGATATGC
980222 CATAGTTGTC
Statistics
Matches: 92, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 53 0.58
81 38 0.41
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (80 bp):
AATTAAATTATTGGCGAAGGATATGCAATAATTGCATCCATTTCTTTTTGACCTCTCATTTTTAA
CGTATAGATGATGCT
Found at i:980435 original size:81 final size:81
Alignment explanation
Indices: 980330--980545 Score: 208
Period size: 81 Copynumber: 2.7 Consensus size: 81
980320 AATATGGAGT
* * * * *
980330 CATCCATTTC-TTTTGGTCTCTCATTTCTATCGTGTTCATGGTAT-C-CATTAAATTATTGACCA
1 CATCCATTTCTTTTTGGCCTCTCATTTCTAACGTATTCAT-G-ATGCTAATTAAATTACTGACCA
980392 AAGGATACCCAATAATTG
64 AAGGATACCCAATAATTG
* * * * *
980410 CATCCATTTCTTTTTGGCCTTTCATTTTTAACGTATTTATGATGCTAATTAAATTACTGGCCGAA
1 CATCCATTTCTTTTTGGCCTCTCATTTCTAACGTATTCATGATGCTAATTAAATTACTGACCAAA
**
980475 GGATATGCAATAATTG
66 GGATACCCAATAATTG
* * * * **
980491 CATCCATTTC-TTTTGACTTCTCATTTTTAACGTGTAGAT-AGTGCTAATTAAATTA
1 CATCCATTTCTTTTTGGCCTCTCATTTCTAACGTATTCATGA-TGCTAATTAAATTA
980546 TTGGTCGAAG
Statistics
Matches: 114, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
79 3 0.03
80 49 0.43
81 62 0.54
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (81 bp):
CATCCATTTCTTTTTGGCCTCTCATTTCTAACGTATTCATGATGCTAATTAAATTACTGACCAAA
GGATACCCAATAATTG
Found at i:980540 original size:341 final size:341
Alignment explanation
Indices: 979917--980610 Score: 1343
Period size: 341 Copynumber: 2.0 Consensus size: 341
979907 GTCAAGTCAA
979917 TAAATAAATTAACAATTCTAAAATACCTATAGTTTTTATTCAGTTCAAGTCAATCTTTATCCAAT
1 TAAATAAATTAACAATTCTAAAATACCTATAGTTTTTATTCAGTTCAAGTCAATCTTTATCCAAT
979982 ATGGAGTCATCCATTTCTTTTGGTCTCTCATTTCTATCGTGTTCATGGTATCAATTAAATTATTG
66 ATGGAGTCATCCATTTCTTTTGGTCTCTCATTTCTATCGTGTTCATGGTATCAATTAAATTATTG
*
980047 ACCAAAGGATACCCAATAATTGCATGCATTTCTTTTTGGCCTCTCATTTTTAACGTATTTATGAT
131 ACCAAAGGATACCCAATAATTGCATCCATTTCTTTTTGGCCTCTCATTTTTAACGTATTTATGAT
*
980112 GCTAATTAAATTACTGGCTGAAGGATATGCAATAATTGCATCCATTTCTTTTGACTTCTCATTTT
196 GCTAATTAAATTACTGGCCGAAGGATATGCAATAATTGCATCCATTTCTTTTGACTTCTCATTTT
980177 TAACGTGTAGATAGTGCTAATTAAATTATTGGTCGAAGGATATGCCATAGTTGTCAACATTATGA
261 TAACGTGTAGATAGTGCTAATTAAATTATTGGTCGAAGGATATGCCATAGTTGTCAACATTATGA
980242 TGCAATAGGAAATACT
326 TGCAATAGGAAATACT
*
980258 TAAATAAATTAACAATTCTAAAATACCTATAGTTTTTATTCAGTTCAAGTTAATCTTTATCCAAT
1 TAAATAAATTAACAATTCTAAAATACCTATAGTTTTTATTCAGTTCAAGTCAATCTTTATCCAAT
*
980323 ATGGAGTCATCCATTTCTTTTGGTCTCTCATTTCTATCGTGTTCATGGTATCCATTAAATTATTG
66 ATGGAGTCATCCATTTCTTTTGGTCTCTCATTTCTATCGTGTTCATGGTATCAATTAAATTATTG
*
980388 ACCAAAGGATACCCAATAATTGCATCCATTTCTTTTTGGCCTTTCATTTTTAACGTATTTATGAT
131 ACCAAAGGATACCCAATAATTGCATCCATTTCTTTTTGGCCTCTCATTTTTAACGTATTTATGAT
980453 GCTAATTAAATTACTGGCCGAAGGATATGCAATAATTGCATCCATTTCTTTTGACTTCTCATTTT
196 GCTAATTAAATTACTGGCCGAAGGATATGCAATAATTGCATCCATTTCTTTTGACTTCTCATTTT
980518 TAACGTGTAGATAGTGCTAATTAAATTATTGGTCGAAGGATATGCCATAGTTGTCAACATTATGA
261 TAACGTGTAGATAGTGCTAATTAAATTATTGGTCGAAGGATATGCCATAGTTGTCAACATTATGA
980583 TGCAATAGGAAATACT
326 TGCAATAGGAAATACT
980599 TAAATAAATTAA
1 TAAATAAATTAA
980611 ATGAAATTAT
Statistics
Matches: 348, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
341 348 1.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (341 bp):
TAAATAAATTAACAATTCTAAAATACCTATAGTTTTTATTCAGTTCAAGTCAATCTTTATCCAAT
ATGGAGTCATCCATTTCTTTTGGTCTCTCATTTCTATCGTGTTCATGGTATCAATTAAATTATTG
ACCAAAGGATACCCAATAATTGCATCCATTTCTTTTTGGCCTCTCATTTTTAACGTATTTATGAT
GCTAATTAAATTACTGGCCGAAGGATATGCAATAATTGCATCCATTTCTTTTGACTTCTCATTTT
TAACGTGTAGATAGTGCTAATTAAATTATTGGTCGAAGGATATGCCATAGTTGTCAACATTATGA
TGCAATAGGAAATACT
Found at i:980555 original size:80 final size:81
Alignment explanation
Indices: 980376--980562 Score: 245
Period size: 80 Copynumber: 2.3 Consensus size: 81
980366 CATGGTATCC
* * ** *
980376 ATTAAATTATTGACCAAAGGATACCCAATAATTGCATCCATTTCTTTTTGGCCTTTCATTTTTAA
1 ATTAAATTATTGGCCGAAGGATATGCAATAATTGCATCCATTTCTTTTTGGACTTTCATTTTTAA
**
980441 CGTATTTATGATGCTA
66 CGTATAGATGATGCTA
*
980457 ATTAAATTACTGGCCGAAGGATATGCAATAATTGCATCCATTTC-TTTT-GACTTCTCATTTTTA
1 ATTAAATTATTGGCCGAAGGATATGCAATAATTGCATCCATTTCTTTTTGGACTT-TCATTTTTA
*
980520 ACGTGTAGAT-AGTGCTA
65 ACGTATAGATGA-TGCTA
*
980537 ATTAAATTATTGGTCGAAGGATATGC
1 ATTAAATTATTGGCCGAAGGATATGC
980563 CATAGTTGTC
Statistics
Matches: 93, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 5 0.05
80 49 0.53
81 39 0.42
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.40
Consensus pattern (81 bp):
ATTAAATTATTGGCCGAAGGATATGCAATAATTGCATCCATTTCTTTTTGGACTTTCATTTTTAA
CGTATAGATGATGCTA
Found at i:981301 original size:20 final size:22
Alignment explanation
Indices: 981264--981303 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
981254 AGTTGACATG
981264 AATTTATTTAATTTTAATAATT
1 AATTTATTTAATTTTAATAATT
981286 AATTT-TTTAA-TTTAATAA
1 AATTTATTTAATTTTAATAA
981304 ATATATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 5 0.28
22 5 0.28
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
AATTTATTTAATTTTAATAATT
Found at i:981312 original size:20 final size:21
Alignment explanation
Indices: 981264--981312 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
981254 AGTTGACATG
*
981264 AATTTATTTAATTTTAATAATT
1 AATTT-TTTAATTTTAATAAAT
981286 AATTTTTTAA-TTTAATAAAT
1 AATTTTTTAATTTTAATAAAT
981306 ATATTTT
1 A-ATTTT
981313 AGTAGAATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 10 0.40
21 10 0.40
22 5 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
AATTTTTTAATTTTAATAAAT
Found at i:981848 original size:21 final size:21
Alignment explanation
Indices: 981814--981870 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
981804 CACTTTCAAT
981814 ATTATT-AA-TAATATTTAAG
1 ATTATTAAATTAATATTTAAG
*
981833 ATTATTAAATTAATATTTAAT
1 ATTATTAAATTAATATTTAAG
* * *
981854 ATCACTAACTTAATATT
1 ATTATTAAATTAATATT
981871 AATTCATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.19
20 2 0.06
21 24 0.75
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (21 bp):
ATTATTAAATTAATATTTAAG
Found at i:982613 original size:17 final size:17
Alignment explanation
Indices: 982587--982634 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
982577 TTTTTATTTG
982587 TTTTTTTATTTAAT-AA
1 TTTTTTTATTTAATAAA
982603 TTTTTTATATTTAATAAA
1 TTTTTT-TATTTAATAAA
*
982621 TATTTTTATTTAAT
1 TTTTTTTATTTAAT
982635 TTTTTTGTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 6 0.21
17 16 0.55
18 7 0.24
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTTTATTTAATAAA
Found at i:983535 original size:18 final size:18
Alignment explanation
Indices: 983508--983542 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
983498 TATTTTATAA
*
983508 TAATATATTTATAAAAAT
1 TAATAAATTTATAAAAAT
*
983526 TAATAAATTTTTAAAAA
1 TAATAAATTTATAAAAA
983543 CTCTGTGGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TAATAAATTTATAAAAAT
Found at i:984204 original size:19 final size:20
Alignment explanation
Indices: 984168--984210 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
984158 ATTATTTAAC
*
984168 ATTTATAAAATTAATAAATA
1 ATTTATAAAATCAATAAATA
* *
984188 ATTTA-AAAATCAGTAAATT
1 ATTTATAAAATCAATAAATA
984207 ATTT
1 ATTT
984211 CTATGTCCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (20 bp):
ATTTATAAAATCAATAAATA
Found at i:984397 original size:17 final size:17
Alignment explanation
Indices: 984375--984407 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
984365 GTTAATTAAT
*
984375 TTTTATATAATAATAAA
1 TTTTATAAAATAATAAA
984392 TTTTATAAAATAATAA
1 TTTTATAAAATAATAA
984408 TCTTTAGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTTATAAAATAATAAA
Found at i:984413 original size:17 final size:16
Alignment explanation
Indices: 984375--984413 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
984365 GTTAATTAAT
*
984375 TTTTATATAATAATAAA
1 TTTTATAAAATAAT-AA
984392 TTTTATAAAATAATAA
1 TTTTATAAAATAATAA
984408 TCTTTA
1 T-TTTA
984414 GTTTATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
TTTTATAAAATAATAA
Found at i:986527 original size:49 final size:49
Alignment explanation
Indices: 986470--986563 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
986460 TTATGCATCA
*
986470 GCTATAATTTTATTTATTGACAATGAAAA-TTTTAAAATTAAAAAACGAT
1 GCTATAATTTTATATATTGACAAT-AAAATTTTTAAAATTAAAAAACGAT
* *
986519 GCTATAATTTTATATATTGATAATAAAATTTTTAAAATTTAAAAA
1 GCTATAATTTTATATATTGACAATAAAATTTTTAAAATTAAAAAA
986564 TGAGATAAGG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 4 0.10
49 37 0.90
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.41
Consensus pattern (49 bp):
GCTATAATTTTATATATTGACAATAAAATTTTTAAAATTAAAAAACGAT
Found at i:988855 original size:58 final size:58
Alignment explanation
Indices: 988793--989186 Score: 524
Period size: 58 Copynumber: 6.7 Consensus size: 58
988783 TTTTGTGTGG
* *
988793 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAATATTTTTTGGAAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAT-TTTTTTTGAAATTTTATTTTTAA
* *
988851 GGAAAATTGATACTTTCAACTTTTCCTCAAAACATTTTTTTTTGAAATTTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAA-AATTTTTTTTGAAATTTTATTTTTAA
** *
988910 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAATTTTGTTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAATTTTTTTTGAAATTTTATTTTTAA
* * ** **
988968 GAAAAATTCATACTTTCAACTTTTCCTCAAAATCTTTTTTTTTTAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAATTTTTTTTGAAATTTTATTTTTAA
* **
989025 GGAAAATTGATACTTTCAACTTTTCCCCAAAATGTTTTTTTTTGAAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAA-AATTTTTTTTGAAATTTTATTTTTAA
* *
989083 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAAACCTCTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC--AAAAAA-TTTTTTTTGAAATTTTATTTTTAA
* *
989144 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-ATTTTTTTT
989187 TTTTGGAACT
Statistics
Matches: 297, Mismatches: 31, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
57 39 0.13
58 151 0.51
59 55 0.19
60 14 0.05
61 38 0.13
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAAATTTTTTTTGAAATTTTATTTTTAA
Found at i:988928 original size:117 final size:115
Alignment explanation
Indices: 988793--989185 Score: 549
Period size: 117 Copynumber: 3.4 Consensus size: 115
988783 TTTTGTGTGG
988793 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAAT-TTTTTT-GAAATTTATTTTTAAGGAAAAT
*
988858 TGATACTTTCAACTTTTCCTCAAAACATTTTTTTTTGAAATTTTATTTTCAA
64 TGATACTTTCAACTTTTCCTCAAAACATTTTTTTTTGAAATTTTATTTTTAA
* * * *
988910 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAATTTTGTTTTTAAGAAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-ATTTTTTTGAAA-TTTATTTTTAAGGAAAAT
* *
988975 TCATACTTTCAACTTTTCCTCAAAATC-TTTTTTTTT-TAA-TTTATTTTTAA
64 TGATACTTTCAACTTTTCCTCAAAA-CATTTTTTTTTGAAATTTTATTTTTAA
**
989025 GGAAAATTGATACTTTCAACTTTTCCCCAAAATGTTTTTTTTTGAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAA--AATTTTTTTGAAATTTATTTTTAAGGAAAAT
* ** *
989090 TGATACTTTCAACTTTTCCTCAAAAAAAACCTCTTTTTGAAATTTTATTTTTAA
64 TGATACTTTCAACTTTTCCTC--AAAACATTTTTTTTTGAAATTTTATTTTTAA
*
989144 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-ATTTTTTT
989186 TTTTTGGAAC
Statistics
Matches: 245, Mismatches: 20, Indels: 21
0.86 0.07 0.07
Matches are distributed among these distances:
115 77 0.31
116 17 0.07
117 97 0.40
118 11 0.04
119 43 0.18
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (115 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAAATTTTTTTGAAATTTATTTTTAAGGAAAATTG
ATACTTTCAACTTTTCCTCAAAACATTTTTTTTTGAAATTTTATTTTTAA
Found at i:989048 original size:115 final size:114
Alignment explanation
Indices: 988793--989185 Score: 554
Period size: 115 Copynumber: 3.4 Consensus size: 114
988783 TTTTGTGTGG
*
988793 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCC-AAAAATATTTTTTTGAAATTTATTTTTAAGGAAAAT
*
988858 TGATACTTTCAACTTTTCCTCAAAACATTTTTTTTTGAAATTTTATTTTCAA
65 TGATACTTTCAACTTTTCCTCAAAAC-TTTTTTTTT-AAATTTTATTTTTAA
* ** * *
988910 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAATTTTGTTTTTAAGAAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAA-TTTATTTTTAAGGAAAAT
* *
988975 TCATACTTTCAACTTTTCCTCAAAATCTTTTTTTTTTAA-TTTATTTTTAA
65 TGATACTTTCAACTTTTCCTCAAAA-CTTTTTTTTTAAATTTTATTTTTAA
* *
989025 GGAAAATTGATACTTTCAACTTTTCCCCAAAATGTTTTTTTTTGAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAA-ATATTTTTTTGAAATTTATTTTTAAGGAAAAT
* * *
989090 TGATACTTTCAACTTTTCCTCAAAAAAAACCTCTTTTTGAAATTTTATTTTTAA
65 TGATACTTTCAACTTTTCCTC----AAAACTTTTTTTTTAAATTTTATTTTTAA
*
989144 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
989186 TTTTTGGAAC
Statistics
Matches: 246, Mismatches: 22, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
115 77 0.31
116 28 0.11
117 76 0.31
118 18 0.07
119 47 0.19
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (114 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAACTTTTTTTTTAAATTTTATTTTTAA
Found at i:989317 original size:7 final size:7
Alignment explanation
Indices: 989305--989358 Score: 56
Period size: 7 Copynumber: 7.4 Consensus size: 7
989295 CTAATCTAAT
989305 AAATAAA
1 AAATAAA
*
989312 AAATAAT
1 AAATAAA
989319 AAATAAA
1 AAATAAA
989326 CAAATAAAA
1 -AAAT-AAA
989335 CAAATAAA
1 -AAATAAA
*
989343 AATTAAA
1 AAATAAA
989350 AAA-AAA
1 AAATAAA
989356 AAA
1 AAA
989359 AAACCTGGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
6 6 0.15
7 20 0.49
8 7 0.17
9 8 0.20
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (7 bp):
AAATAAA
Found at i:989318 original size:14 final size:15
Alignment explanation
Indices: 989301--989332 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
989291 AAACCTAATC
989301 TAATAAATAAA-AAA
1 TAATAAATAAACAAA
989315 TAATAAATAAACAAA
1 TAATAAATAAACAAA
989330 TAA
1 TAA
989333 AACAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (15 bp):
TAATAAATAAACAAA
Found at i:990671 original size:8 final size:8
Alignment explanation
Indices: 990658--990807 Score: 96
Period size: 8 Copynumber: 18.0 Consensus size: 8
990648 TCAACTCAAC
990658 ATTTTTTG
1 ATTTTTTG
*
990666 ATTTTTTTTT
1 A--TTTTTTG
990676 ATTTTTTG
1 ATTTTTTG
990684 ATTTTTTG
1 ATTTTTTG
990692 CATTTTTTG
1 -ATTTTTTG
990701 A-TTTTTG
1 ATTTTTTG
*
990708 --GTTTT-
1 ATTTTTTG
990713 ATTTTTTG
1 ATTTTTTG
990721 ATTTTTTTTTG
1 A---TTTTTTG
990732 ATTTTTTTTG
1 A--TTTTTTG
990742 ATTTTTTG
1 ATTTTTTG
990750 ATTTTTTG
1 ATTTTTTG
*
990758 TTTTTTTG
1 ATTTTTTG
990766 -TTATTTTG
1 ATT-TTTTG
990774 TTATTTTATT-
1 --ATTTT-TTG
* *
990784 TTTTTTTT
1 ATTTTTTG
*
990792 ATTTTTTT
1 ATTTTTTG
990800 ATTTTTTG
1 ATTTTTTG
990808 CCGAAACTCC
Statistics
Matches: 119, Mismatches: 8, Indels: 30
0.76 0.05 0.19
Matches are distributed among these distances:
6 4 0.03
7 14 0.12
8 62 0.52
9 8 0.07
10 19 0.16
11 12 0.10
ACGTcount: A:0.11, C:0.01, G:0.09, T:0.79
Consensus pattern (8 bp):
ATTTTTTG
Found at i:990717 original size:29 final size:26
Alignment explanation
Indices: 990659--990806 Score: 130
Period size: 29 Copynumber: 5.5 Consensus size: 26
990649 CAACTCAACA
990659 TTTTTTGATTTTTTTTTATTTTTTGA
1 TTTTTTGATTTTTTTTTATTTTTTGA
990685 TTTTTTGCATTTTTTGATTT-TTGGTTTT-A
1 TTTTTTG-ATTTTTT--TTTATT--TTTTGA
990714 TTTTTTGATTTTTTTTTGATTTTTTTTGA
1 TTTTTTGATTTTTTTTT-A--TTTTTTGA
990743 TTTTTTGATTTTTTGTTT-TTTTGTT-A
1 TTTTTTGATTTTTT-TTTATTTT-TTGA
*
990769 TTTTGTT-ATTTTATTTT-TTTTTT-A
1 TTTT-TTGATTTTTTTTTATTTTTTGA
*
990793 TTTTTTTATTTTTT
1 TTTTTTGATTTTTT
990807 GCCGAAACTC
Statistics
Matches: 106, Mismatches: 2, Indels: 30
0.77 0.01 0.22
Matches are distributed among these distances:
23 2 0.02
24 13 0.12
25 7 0.07
26 25 0.24
27 11 0.10
28 13 0.12
29 26 0.25
30 9 0.08
ACGTcount: A:0.10, C:0.01, G:0.09, T:0.80
Consensus pattern (26 bp):
TTTTTTGATTTTTTTTTATTTTTTGA
Found at i:990722 original size:37 final size:35
Alignment explanation
Indices: 990657--990806 Score: 140
Period size: 34 Copynumber: 4.5 Consensus size: 35
990647 CTCAACTCAA
990657 CATTTTTTGATTTTTTTTTATTTTTTGATTTTTTG
1 CATTTTTTGATTTTTTTTTATTTTTTGATTTTTTG
990692 CATTTTTTGATTTTTGGTTTTATTTTTTGA---TTT-
1 CATTTTTTGATTTTT--TTTTATTTTTTGATTTTTTG
*
990725 --TTTTTTGATTTTTTTTGATTTTTTGATTTTTTG
1 CATTTTTTGATTTTTTTTTATTTTTTGATTTTTTG
* * *
990758 -TTTTTTTG-TTATTTTGTTATTTTATT--TTTTTTT
1 CATTTTTTGATT-TTTTTTTATTTT-TTGATTTTTTG
* *
990791 TATTTTTTTATTTTTT
1 CATTTTTTGATTTTTT
990807 GCCGAAACTC
Statistics
Matches: 98, Mismatches: 6, Indels: 23
0.77 0.05 0.18
Matches are distributed among these distances:
29 12 0.12
31 13 0.13
32 3 0.03
33 8 0.08
34 30 0.31
35 19 0.19
37 13 0.13
ACGTcount: A:0.11, C:0.01, G:0.09, T:0.79
Consensus pattern (35 bp):
CATTTTTTGATTTTTTTTTATTTTTTGATTTTTTG
Found at i:990731 original size:66 final size:67
Alignment explanation
Indices: 990658--990806 Score: 196
Period size: 66 Copynumber: 2.2 Consensus size: 67
990648 TCAACTCAAC
* *
990658 ATTTTTTGATTTTTTTTTATTTTTTGATTTTTTGCATTTTTTG-ATTTT-TGGTTTTATTTTTTG
1 ATTTTTTGATTTTTTTTGATTTTTTGATTTTTTG-ATTTTTTGTATTTTGTGATTTTATTTTTT-
990721 ATTT
64 ATTT
* * *
990725 -TTTTTTGATTTTTTTTGATTTTTTGATTTTTTGTTTTTTTGTTATTTTGTTATTTTATTTTTTT
1 ATTTTTTGATTTTTTTTGATTTTTTGATTTTTTGATTTTTTG-TATTTTGTGATTTTATTTTTTA
990789 TTT
65 TTT
*
990792 ATTTTTTTATTTTTT
1 ATTTTTTGATTTTTT
990807 GCCGAAACTC
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
65 7 0.10
66 32 0.44
67 8 0.11
68 25 0.35
ACGTcount: A:0.11, C:0.01, G:0.09, T:0.80
Consensus pattern (67 bp):
ATTTTTTGATTTTTTTTGATTTTTTGATTTTTTGATTTTTTGTATTTTGTGATTTTATTTTTTAT
TT
Found at i:990749 original size:49 final size:48
Alignment explanation
Indices: 990661--990805 Score: 154
Period size: 50 Copynumber: 3.0 Consensus size: 48
990651 ACTCAACATT
990661 TTTTGATTTTTT-TTTATTTTTTGA--TTTTTTGCATTTTTTGATTTTTGG
1 TTTT-ATTTTTTATTT-TTTTTTGATTTTTTTTG-ATTTTTTGATTTTTGG
*
990709 TTTTATTTTTTGATTTTTTTTTGATTTTTTTTGATTTTTTGATTTTTTG
1 TTTTATTTTTT-ATTTTTTTTTGATTTTTTTTGATTTTTTGATTTTTGG
* * * *
990758 TTTT-TTTGTTATTTTGTTATTTTATTTTTTTTTTATTTTTTTATTTTT
1 TTTTATTTTTTATTTT-TT-TTTGA-TTTTTTTTGATTTTTTGATTTTT
990806 TGCCGAAACT
Statistics
Matches: 85, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
47 12 0.14
48 19 0.22
49 26 0.31
50 28 0.33
ACGTcount: A:0.10, C:0.01, G:0.09, T:0.80
Consensus pattern (48 bp):
TTTTATTTTTTATTTTTTTTTGATTTTTTTTGATTTTTTGATTTTTGG
Found at i:990993 original size:83 final size:82
Alignment explanation
Indices: 990840--991306 Score: 710
Period size: 83 Copynumber: 5.7 Consensus size: 82
990830 CTCAACAACT
* *
990840 TTTG-AAAGTAAATTGCTACTCTAAACAGAGGCA--ACGGACTTTGAAAAATAAATTGCTCCTCT
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCAC-GACTTTGAAAAATAAATTGCTCCTCT
990902 CAACAGAGGCACCACGAC
65 CAACAGAGGCACCACGAC
990920 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAAATAAATTGCTCCTCT
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTTG-AAAAATAAATTGCTCCTCT
990985 CAACAGAGGCACCACGAC
65 CAACAGAGGCACCACGAC
* * * * *
991003 TTTGAAAAGTAAATTACTTCTCTCAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTA
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTC
991068 AACAGAGGCACCACGAC
66 AACAGAGGCACCACGAC
*
991085 TTTGGAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGGAAAAATAAATTGCTCCTCT
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTT-GAAAAATAAATTGCTCCTCT
991150 CAACAGAGGCA--ACGAAAC
65 CAACAGAGGCACCACG--AC
* *
991168 TTTGAAAAGTAAATTGTTCCTCTCAACAGAGACACCACGACTTTGGAAAAATAAATTGCTCCTCT
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTT-GAAAAATAAATTGCTCCTCT
991233 CAACAGAGGCACCACGAC
65 CAACAGAGGCACCACGAC
* * * *
991251 TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCAACACGACTTTTGAAAAGTAAAT
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC-TTTGAAAAATAAAT
991307 ACTCCTTGAC
Statistics
Matches: 355, Mismatches: 22, Indels: 17
0.90 0.06 0.04
Matches are distributed among these distances:
80 4 0.01
81 30 0.08
82 82 0.23
83 233 0.66
84 3 0.01
85 3 0.01
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (82 bp):
TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTC
AACAGAGGCACCACGAC
Found at i:991032 original size:124 final size:123
Alignment explanation
Indices: 990840--991306 Score: 692
Period size: 124 Copynumber: 3.8 Consensus size: 123
990830 CTCAACAACT
* * *
990840 TTTG-AAAGTAAATTGCTACTCTAAACAGAGGCA--ACGGACTTTGAAAAATAAATTGCTCCTCT
1 TTTGAAAAATAAATTGCTCCTCTCAACAGAGGCACCAC-GACTTTGAAAAATAAATTGCTCCTCT
990902 CAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
65 CAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
* * *
990961 TTTGAAAAAATAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATTACTTCTCT
1 TTTG-AAAAATAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCT
* *
991026 CAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
65 CAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
* *
991085 TTTGGAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGGAAAAATAAATTGCTCCTCT
1 TTTGAAAAATAAATTGCTCCTCTCAACAGAGGCACCACGACTTT-GAAAAATAAATTGCTCCTCT
* *
991150 CAACAGAGGCA--ACGAAACTTTGAAAAGTAAATTGTTCCTCTCAACAGAGACACCACGAC
65 CAACAGAGGCACCACG--ACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
* *
991209 TTTGGAAAAATAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCT
1 TTT-GAAAAATAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCT
* *
991274 AAACAGAGGCAACACGACTTTTGAAAAGTAAAT
65 CAACAGAGGCACCACGAC-TTTGAAAAGTAAAT
991307 ACTCCTTGAC
Statistics
Matches: 313, Mismatches: 22, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
121 4 0.01
122 3 0.01
123 64 0.20
124 184 0.59
125 55 0.18
126 3 0.01
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (123 bp):
TTTGAAAAATAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTC
AACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
Found at i:991312 original size:41 final size:41
Alignment explanation
Indices: 990840--991306 Score: 692
Period size: 41 Copynumber: 11.3 Consensus size: 41
990830 CTCAACAACT
* *
990840 TTTG-AAAGTAAATTGCTACTCTAAACAGAGGCA--ACGGAC
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCAC-GAC
*
990879 TTTGAAAAATAAATTGCTCCTCTCAACAGAGGCACCACGAC
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
990920 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
*
990961 TTTGAAAAAATAAATTGCTCCTCTCAACAGAGGCACCACGAC
1 TTTG-AAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
* *
991003 TTTGAAAAGTAAATTACTTCTCTCAACAGAGGCACCACGAC
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
* *
991044 TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
*
991085 TTTGGAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
*
991126 TTTGGAAAAATAAATTGCTCCTCTCAACAGAGGCA--ACGAAAC
1 TTT-GAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACG--AC
* *
991168 TTTGAAAAGTAAATTGTTCCTCTCAACAGAGACACCACGAC
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
*
991209 TTTGGAAAAATAAATTGCTCCTCTCAACAGAGGCACCACGAC
1 TTT-GAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
* * *
991251 TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCAACACGAC
1 TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
991292 TTTTGAAAAGTAAAT
1 -TTTGAAAAGTAAAT
991307 ACTCCTTGAC
Statistics
Matches: 391, Mismatches: 26, Indels: 19
0.90 0.06 0.04
Matches are distributed among these distances:
39 4 0.01
40 29 0.07
41 228 0.58
42 127 0.32
43 3 0.01
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (41 bp):
TTTGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGAC
Done.