Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 95 of 117
Found at i:17057072 original size:21 final size:20
Alignment explanation
Indices: 17057035--17057073 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
17057025 TCTAAATAGG
*
17057035 AAACTGTGCTTGAAGAAATC
1 AAACTGTGCTTCAAGAAATC
*
17057055 AAACTGGTGCTTCCAGAAA
1 AAACT-GTGCTTCAAGAAA
17057074 ATGACATCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (20 bp):
AAACTGTGCTTCAAGAAATC
Found at i:17067575 original size:34 final size:34
Alignment explanation
Indices: 17067396--17067575 Score: 126
Period size: 34 Copynumber: 5.1 Consensus size: 34
17067386 GACTTTTAAA
* * * * *
17067396 TTTAAAATTTCATTACCTTTGGTTAGAGGAGCTA
1 TTTAAAGTTTCATAACCTTTGGTCAAAGGAGCTT
** * *
17067430 TTTAAAGTTTCATTGCCTTTGGTCGAATGAGCTTT
1 TTTAAAGTTTCATAACCTTTGGTCAAAGGAGC-TT
* * **
17067465 CTTTAAAAGTATCATAACCTCTACTCAAAGGAGCTTT
1 -TTT-AAAGTTTCATAACCTTTGGTCAAAGGAGC-TT
** * * **
17067502 ATTTAAAGTGACATAACCTTTGGTCAGAGCAGCCA
1 -TTTAAAGTTTCATAACCTTTGGTCAAAGGAGCTT
* *
17067537 TTTAAAGTTTCATAGCCTTTGGTCAAAGAAGCTT
1 TTTAAAGTTTCATAACCTTTGGTCAAAGGAGCTT
17067571 TTTAA
1 TTTAA
17067576 TTTTAAGAGC
Statistics
Matches: 111, Mismatches: 32, Indels: 6
0.74 0.21 0.04
Matches are distributed among these distances:
34 58 0.52
35 1 0.01
36 25 0.23
37 27 0.24
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (34 bp):
TTTAAAGTTTCATAACCTTTGGTCAAAGGAGCTT
Found at i:17067821 original size:41 final size:40
Alignment explanation
Indices: 17067662--17067866 Score: 234
Period size: 40 Copynumber: 5.1 Consensus size: 40
17067652 CCTCTCTGAT
* *
17067662 TTTTAAATTTAAAGTTTCATTGCCTCTGGTCAGAGGAGCC
1 TTTTGAATTTAAAGTTTCATAGCCTCTGGTCAGAGGAGCC
* * * * * *
17067702 TTTTGAAATTAAAGTTTTATAGCCTTCCGCTCAAATGAGCC
1 TTTTGAATTTAAAGTTTCATAGCC-TCTGGTCAGAGGAGCC
*
17067743 TTTTGAATTTAAAGTTTCATAG-CTTTGGTCAGAGGAGCC
1 TTTTGAATTTAAAGTTTCATAGCCTCTGGTCAGAGGAGCC
* *
17067782 TTTT-AACCTTTAAAGTTTCATCGCCTCTGGTCAGAGGAGCT
1 TTTTGAA--TTTAAAGTTTCATAGCCTCTGGTCAGAGGAGCC
* ** *
17067823 TTTTGAATTTAAAGTTTCATAACCTCTTATCAGAGGAGCT
1 TTTTGAATTTAAAGTTTCATAGCCTCTGGTCAGAGGAGCC
17067863 TTTT
1 TTTT
17067867 CTTAAATTTT
Statistics
Matches: 138, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
38 2 0.01
39 15 0.11
40 68 0.49
41 51 0.37
42 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (40 bp):
TTTTGAATTTAAAGTTTCATAGCCTCTGGTCAGAGGAGCC
Found at i:17068134 original size:13 final size:13
Alignment explanation
Indices: 17068106--17068151 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
17068096 TGTCCACACA
* *
17068106 AAAAAATTATAAT
1 AAAAAATAAAAAT
*
17068119 AAATAATAAAAAT
1 AAAAAATAAAAAT
17068132 AAAAAATAAAAAT
1 AAAAAATAAAAAT
17068145 AAGAAAA
1 AA-AAAA
17068152 AAGTAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 24 0.86
14 4 0.14
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:17068138 original size:16 final size:16
Alignment explanation
Indices: 17068107--17068159 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
17068097 GTCCACACAA
* *
17068107 AAAAATTATAATAAAT
1 AAAAATAATAAAAAAT
17068123 AATAAA-AATAAAAAAT
1 AA-AAATAATAAAAAAT
*
17068139 AAAAATAAGAAAAAAGT
1 AAAAATAATAAAAAA-T
17068156 AAAA
1 AAAA
17068160 TTTGGGTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 3 0.10
16 20 0.65
17 8 0.26
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (16 bp):
AAAAATAATAAAAAAT
Found at i:17069096 original size:10 final size:10
Alignment explanation
Indices: 17069073--17069114 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
17069063 TTTTATAATT
17069073 TATA-ATTTA
1 TATATATTTA
17069082 T-TATACTTATA
1 TATATA-TT-TA
17069093 TATATATTTA
1 TATATATTTA
17069103 TATATATTTA
1 TATATATTTA
17069113 TA
1 TA
17069115 CTAAAAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 2 0.07
9 2 0.07
10 16 0.55
11 5 0.17
12 4 0.14
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (10 bp):
TATATATTTA
Found at i:17079635 original size:3 final size:3
Alignment explanation
Indices: 17079624--17079690 Score: 59
Period size: 3 Copynumber: 22.0 Consensus size: 3
17079614 GAAATTATTA
* *
17079624 AAT ATT AAT AAT AAT AA- AATT AA- AAGTT AAT AA- AAA AACT AAT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AAT AA--T AAT AAT AAT AA-T AAT AAT
17079670 AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT
17079691 TTTCCTTTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
2 6 0.11
3 42 0.78
4 4 0.07
5 2 0.04
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:17079848 original size:15 final size:16
Alignment explanation
Indices: 17079820--17079850 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
17079810 TTAAGATTTC
17079820 AAATTTCAAAAACCCT
1 AAATTTCAAAAACCCT
17079836 AAATTTC-AAAACCCT
1 AAATTTCAAAAACCCT
17079851 CTAAACCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATTTCAAAAACCCT
Found at i:17079935 original size:44 final size:45
Alignment explanation
Indices: 17079887--17079974 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 45
17079877 ATCCCAAACC
17079887 CAAAAATCCAAA-AATTGAGAACTTTAAAATT-AAAACCCTAAAAT
1 CAAAAATCCAAACAATTGA-AACTTTAAAATTCAAAACCCTAAAAT
* **
17079931 CAAAACTCCAAACCTTTGAAACTTTAAAATTCAAAACCCTAAAA
1 CAAAAATCCAAACAATTGAAACTTTAAAATTCAAAACCCTAAAA
17079975 CCCTCCAAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
44 23 0.59
45 16 0.41
ACGTcount: A:0.53, C:0.20, G:0.03, T:0.23
Consensus pattern (45 bp):
CAAAAATCCAAACAATTGAAACTTTAAAATTCAAAACCCTAAAAT
Found at i:17080101 original size:15 final size:15
Alignment explanation
Indices: 17080069--17080227 Score: 54
Period size: 15 Copynumber: 10.3 Consensus size: 15
17080059 TCCAAACTAT
*
17080069 AAATCTTAAAGCCC-A
1 AAAT-TTAAAACCCTA
17080084 AAATTTAAAACCCTA
1 AAATTTAAAACCCTA
* **
17080099 AAACCTCCAAACCCTA
1 AAA-TTTAAAACCCTA
* *
17080115 AAGCCTTCTAAACCCCTA
1 AA--ATT-TAAAACCCTA
* *
17080133 AAATTTTAAATCCTA
1 AAATTTAAAACCCTA
*
17080148 AAATTCTAAATA-TC-A
1 AAATT-TAAA-ACCCTA
**
17080163 AAGCTTAAAACCCTA
1 AAATTTAAAACCCTA
** * *
17080178 AAACCTAGAACCTTA
1 AAATTTAAAACCCTA
** *
17080193 AAATCCAAAACCTTA
1 AAATTTAAAACCCTA
*
17080208 AAATTTCAAAACCTTA
1 AAATTT-AAAACCCTA
17080224 AAAT
1 AAAT
17080228 CCAAAGTCCC
Statistics
Matches: 107, Mismatches: 27, Indels: 19
0.70 0.18 0.12
Matches are distributed among these distances:
13 1 0.01
14 13 0.12
15 52 0.49
16 30 0.28
17 2 0.02
18 9 0.08
ACGTcount: A:0.48, C:0.25, G:0.03, T:0.25
Consensus pattern (15 bp):
AAATTTAAAACCCTA
Found at i:17080112 original size:16 final size:17
Alignment explanation
Indices: 17080091--17080135 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
17080081 CCAAAATTTA
17080091 AAACCCTAAAACC-TCC
1 AAACCCTAAAACCTTCC
* *
17080107 AAACCCTAAAGCCTTCT
1 AAACCCTAAAACCTTCC
17080124 AAACCCCTAAAA
1 AAA-CCCTAAAA
17080136 TTTTAAATCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 12 0.50
17 5 0.21
18 7 0.29
ACGTcount: A:0.44, C:0.38, G:0.02, T:0.16
Consensus pattern (17 bp):
AAACCCTAAAACCTTCC
Found at i:17080217 original size:53 final size:52
Alignment explanation
Indices: 17080155--17080273 Score: 123
Period size: 53 Copynumber: 2.2 Consensus size: 52
17080145 CTAAAATTCT
* * * *
17080155 AAATATCAAAGCTTAAAACCCTAAA-ACCTAGAACCTTAAAATCCAAAACCTTA
1 AAATTTCAAACCTTAAAACCC-AAAGACCCA-AACCTTAAAATCCAAAACCTAA
* * *
17080208 AAATTTCAAAACCTTAAAATCCAAAGTCCCAAACCTTAAAATTCAAAACCTAA
1 AAATTTC-AAACCTTAAAACCCAAAGACCCAAACCTTAAAATCCAAAACCTAA
17080261 AAACTATTCAAAC
1 AAA-T-TTCAAAC
17080274 ACTAAAATCT
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
53 32 0.58
54 20 0.36
55 3 0.05
ACGTcount: A:0.51, C:0.24, G:0.03, T:0.22
Consensus pattern (52 bp):
AAATTTCAAACCTTAAAACCCAAAGACCCAAACCTTAAAATCCAAAACCTAA
Found at i:17080219 original size:16 final size:16
Alignment explanation
Indices: 17080186--17080232 Score: 71
Period size: 15 Copynumber: 3.1 Consensus size: 16
17080176 TAAAACCTAG
17080186 AACCTTAAAA-TCCAA
1 AACCTTAAAATTCCAA
*
17080201 AACCTTAAAATTTCAA
1 AACCTTAAAATTCCAA
17080217 AACCTTAAAA-TCCAA
1 AACCTTAAAATTCCAA
17080232 A
1 A
17080233 GTCCCAAACC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 15 0.52
16 14 0.48
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.23
Consensus pattern (16 bp):
AACCTTAAAATTCCAA
Found at i:17080219 original size:38 final size:36
Alignment explanation
Indices: 17080192--17080262 Score: 106
Period size: 38 Copynumber: 1.9 Consensus size: 36
17080182 CTAGAACCTT
17080192 AAAATCCAAAACCTTAAAATTTCAAAACCTTAAAATCC
1 AAAATCCAAAACCTTAAAA-TTCAAAACC-TAAAATCC
* *
17080230 AAAGTCCCAAACCTTAAAATTCAAAACCTAAAA
1 AAAATCCAAAACCTTAAAATTCAAAACCTAAAA
17080263 ACTATTCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 5 0.16
37 9 0.29
38 17 0.55
ACGTcount: A:0.54, C:0.24, G:0.01, T:0.21
Consensus pattern (36 bp):
AAAATCCAAAACCTTAAAATTCAAAACCTAAAATCC
Found at i:17082291 original size:13 final size:13
Alignment explanation
Indices: 17082273--17082376 Score: 83
Period size: 13 Copynumber: 8.2 Consensus size: 13
17082263 GGTTGTTATA
17082273 TTGTTTCTATTAC
1 TTGTTTCTATTAC
* **
17082286 TTGTTTGT-TTGG
1 TTGTTTCTATTAC
17082298 TTGTTTCTATTAC
1 TTGTTTCTATTAC
17082311 TTGTTTCTA-TAC
1 TTGTTTCTATTAC
*
17082323 TTG-TT-TGTTA-
1 TTGTTTCTATTAC
* ** *
17082333 TATGGTTGAATTATA
1 T-TGTTTCTATTA-C
17082348 TTGTTTCTATTAC
1 TTGTTTCTATTAC
17082361 TTGTTTCTATTAC
1 TTGTTTCTATTAC
17082374 TTG
1 TTG
17082377 GTTGTTATAT
Statistics
Matches: 71, Mismatches: 13, Indels: 14
0.72 0.13 0.14
Matches are distributed among these distances:
10 2 0.03
11 6 0.08
12 17 0.24
13 37 0.52
14 8 0.11
15 1 0.01
ACGTcount: A:0.15, C:0.10, G:0.14, T:0.61
Consensus pattern (13 bp):
TTGTTTCTATTAC
Found at i:17082326 original size:25 final size:24
Alignment explanation
Indices: 17082269--17082370 Score: 89
Period size: 25 Copynumber: 4.1 Consensus size: 24
17082259 GTATGGTTGT
*
17082269 TATATTGTTTCTATTACTTGTTTG
1 TATATTGTTTCTATTACTTGTTTC
* *
17082293 TTTGGTTGTTTCTATTACTTGTTTC
1 TAT-ATTGTTTCTATTACTTGTTTC
* ** **
17082318 TATACTTGTTTGTTATATGGTTGAAT-
1 TATA-TTGTTT-CTAT-TACTTGTTTC
17082344 TATATTGTTTCTATTACTTGTTTC
1 TATATTGTTTCTATTACTTGTTTC
17082368 TAT
1 TAT
17082371 TACTTGGTTG
Statistics
Matches: 58, Mismatches: 15, Indels: 10
0.70 0.18 0.12
Matches are distributed among these distances:
23 5 0.09
24 8 0.14
25 33 0.57
26 7 0.12
27 5 0.09
ACGTcount: A:0.17, C:0.09, G:0.14, T:0.61
Consensus pattern (24 bp):
TATATTGTTTCTATTACTTGTTTC
Found at i:17082352 original size:37 final size:35
Alignment explanation
Indices: 17082253--17082386 Score: 130
Period size: 38 Copynumber: 3.6 Consensus size: 35
17082243 ATTATATTAT
17082253 TTTGTTGTATGGTTGTTATATTGTTTCTATTACTTG
1 TTTGTT-TATGGTTGTTATATTGTTTCTATTACTTG
17082289 TTTG-TT-TGGTTGTTTCTATTACTTGTTTCTA-TACTTG
1 TTTGTTTATGGTTG--T-TA-TA-TTGTTTCTATTACTTG
17082326 TTTGTTATATGGTTGAATTATATTGTTTCTATTACTTG
1 TTTGTT-TATGGTTG--TTATATTGTTTCTATTACTTG
*
17082364 TTTCTATTACTTGGTTGTTATAT
1 TTTGT-TTA--TGGTTGTTATAT
17082387 ACATTTTATT
Statistics
Matches: 83, Mismatches: 3, Indels: 22
0.77 0.03 0.20
Matches are distributed among these distances:
33 6 0.07
34 1 0.01
35 2 0.02
36 6 0.07
37 21 0.25
38 30 0.36
39 4 0.05
40 13 0.16
ACGTcount: A:0.16, C:0.07, G:0.16, T:0.60
Consensus pattern (35 bp):
TTTGTTTATGGTTGTTATATTGTTTCTATTACTTG
Found at i:17085645 original size:24 final size:24
Alignment explanation
Indices: 17085618--17085698 Score: 72
Period size: 24 Copynumber: 3.2 Consensus size: 24
17085608 TTTATGGTTA
17085618 TATTATCATTTGAGGTCTTTTATT
1 TATTATCATTTGAGGTCTTTTATT
* * ** * **
17085642 TATTATAAGTTTTAAATATATTGTAGG
1 TATTATCA-TTTGAGGTCT-TT-TATT
17085669 TATTATCATTTGAGGTCTTTTATT
1 TATTATCATTTGAGGTCTTTTATT
17085693 TATTAT
1 TATTAT
17085699 AAGTTTTAAA
Statistics
Matches: 40, Mismatches: 14, Indels: 6
0.67 0.23 0.10
Matches are distributed among these distances:
24 15 0.38
25 8 0.20
26 8 0.20
27 9 0.22
ACGTcount: A:0.27, C:0.05, G:0.12, T:0.56
Consensus pattern (24 bp):
TATTATCATTTGAGGTCTTTTATT
Found at i:17085694 original size:51 final size:51
Alignment explanation
Indices: 17085618--17085720 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
17085608 TTTATGGTTA
17085618 TATTATCATTTGAGGTCTTTTATTTATTATAAGTTTTAAATATATTGTAGG
1 TATTATCATTTGAGGTCTTTTATTTATTATAAGTTTTAAATATATTGTAGG
17085669 TATTATCATTTGAGGTCTTTTATTTATTATAAGTTTTAAATATATTGTAGG
1 TATTATCATTTGAGGTCTTTTATTTATTATAAGTTTTAAATATATTGTAGG
17085720 T
1 T
17085721 TTTCTTTGAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.29, C:0.04, G:0.14, T:0.53
Consensus pattern (51 bp):
TATTATCATTTGAGGTCTTTTATTTATTATAAGTTTTAAATATATTGTAGG
Found at i:17086539 original size:18 final size:16
Alignment explanation
Indices: 17086506--17086557 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
17086496 TGGGGGCATG
*
17086506 TAAAAAAAACTAAAAA
1 TAAAAAAAAGTAAAAA
17086522 TAAAAAAAAGTAAGAAA
1 TAAAAAAAAGTAA-AAA
17086539 -AGAGAAAAAAG-AAAAA
1 TA-A-AAAAAAGTAAAAA
17086555 TAA
1 TAA
17086558 TTATGACATC
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
16 17 0.55
17 7 0.23
18 7 0.23
ACGTcount: A:0.79, C:0.02, G:0.10, T:0.10
Consensus pattern (16 bp):
TAAAAAAAAGTAAAAA
Found at i:17087034 original size:11 final size:10
Alignment explanation
Indices: 17087013--17087071 Score: 57
Period size: 10 Copynumber: 5.8 Consensus size: 10
17087003 GAAAGAATGC
17087013 AAAAG-AAAA
1 AAAAGAAAAA
17087022 AAAAGAAAAA
1 AAAAGAAAAA
*
17087032 AAAAGGAAAGA
1 AAAA-GAAAAA
* *
17087043 AAGAGTAAAA
1 AAAAGAAAAA
*
17087053 GAAAGAAAAA
1 AAAAGAAAAA
17087063 TAAAAGAAA
1 -AAAAGAAA
17087072 TGAATGAGTG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
9 5 0.13
10 19 0.49
11 15 0.38
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:17087058 original size:16 final size:15
Alignment explanation
Indices: 17087013--17087071 Score: 66
Period size: 15 Copynumber: 3.9 Consensus size: 15
17087003 GAAAGAATGC
* *
17087013 AAAAGAAAAAAAAGA
1 AAAATAAAAGAAAGA
17087028 AAAA-AAAAGGAAAGA
1 AAAATAAAA-GAAAGA
*
17087043 AAGAGTAAAAGAAAGA
1 AA-AATAAAAGAAAGA
17087059 AAAATAAAAGAAA
1 AAAATAAAAGAAA
17087072 TGAATGAGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
14 4 0.11
15 21 0.55
16 9 0.24
17 4 0.11
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (15 bp):
AAAATAAAAGAAAGA
Found at i:17088100 original size:32 final size:32
Alignment explanation
Indices: 17088012--17088127 Score: 83
Period size: 32 Copynumber: 3.6 Consensus size: 32
17088002 GCTGGCATGC
* * *
17088012 AAGCCTAAATTATCTAGCACCAAT-AAAGTTTT
1 AAGCCTAGATTAGCTAGCACCAATGAAA-TATT
* * * * *
17088044 AAGCCTAGTTTAGC-CGATATCAATGAAAAATT
1 AAGCCTAGATTAGCTAG-CACCAATGAAATATT
* * * *
17088076 AAGCCTAGATTATCTAGCACCAATGGAGTCTT
1 AAGCCTAGATTAGCTAGCACCAATGAAATATT
*
17088108 AAGCCCAGATTAGCTAGCAC
1 AAGCCTAGATTAGCTAGCAC
17088128 ATAAGCCCAG
Statistics
Matches: 62, Mismatches: 19, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
31 1 0.02
32 57 0.92
33 4 0.06
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (32 bp):
AAGCCTAGATTAGCTAGCACCAATGAAATATT
Found at i:17088135 original size:22 final size:22
Alignment explanation
Indices: 17088107--17088186 Score: 88
Period size: 22 Copynumber: 3.6 Consensus size: 22
17088097 AATGGAGTCT
*
17088107 TAAGCCCAGATTAGCTAGCACA
1 TAAGCCCAGATTAACTAGCACA
* * *
17088129 TAAGCCCAGTTTAACTGGCATAA
1 TAAGCCCAGATTAACTAGCA-CA
**
17088152 TAAGCCTTGATTAACTAGCACA
1 TAAGCCCAGATTAACTAGCACA
*
17088174 TAGGCCCAGATTA
1 TAAGCCCAGATTA
17088187 GCTGAAAAAG
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
22 28 0.62
23 17 0.38
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (22 bp):
TAAGCCCAGATTAACTAGCACA
Found at i:17088506 original size:31 final size:32
Alignment explanation
Indices: 17088439--17088536 Score: 98
Period size: 28 Copynumber: 3.2 Consensus size: 32
17088429 CTAAAAAAAG
* *
17088439 ATTTAAGCCCAGTTTACCTAGCA-CC--T-AA
1 ATTTAAGCCCAGTTTAGCTGGCACCCAATAAA
* * *
17088467 TTTTAAGCCCAGTTTATC-GGCACCCAATGAA
1 ATTTAAGCCCAGTTTAGCTGGCACCCAATAAA
**
17088498 ATTTAAGCCCAGTTTAGCTGGTTCCCAATAAA
1 ATTTAAGCCCAGTTTAGCTGGCACCCAATAAA
17088530 ATTTAAG
1 ATTTAAG
17088537 TAAGCCCAGT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
27 3 0.05
28 18 0.32
30 1 0.02
31 18 0.32
32 17 0.30
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (32 bp):
ATTTAAGCCCAGTTTAGCTGGCACCCAATAAA
Found at i:17088525 original size:32 final size:31
Alignment explanation
Indices: 17088468--17088536 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 31
17088458 AGCACCTAAT
* *
17088468 TTTAAGCCCAGTTTATCGGCACCCAATGAAA
1 TTTAAGCCCAGTTTAGCGGCACCCAATAAAA
**
17088499 TTTAAGCCCAGTTTAGCTGGTTCCCAATAAAA
1 TTTAAGCCCAGTTTAGC-GGCACCCAATAAAA
17088531 TTTAAG
1 TTTAAG
17088537 TAAGCCCAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
31 16 0.48
32 17 0.52
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (31 bp):
TTTAAGCCCAGTTTAGCGGCACCCAATAAAA
Found at i:17088530 original size:96 final size:96
Alignment explanation
Indices: 17088343--17088517 Score: 216
Period size: 96 Copynumber: 1.9 Consensus size: 96
17088333 TCTACATAAA
* * *
17088343 ATTTAAGCCCGATTTACCTAACACCCAATTTTAAGCCTAGTTTATCTTGCCTCCAAGGCAATTTT
1 ATTTAAGCCCGATTTACCTAACACCCAATTTTAAGCCCAGTTTATCTGGCCTCCAAGGCAATATT
* * *
17088408 TAAGCCTAGTTTATCTGACCCCTAAAAAAAG
66 TAAGCCCAGTTTAGCTGACCCATAAAAAAAG
* * *
17088439 ATTTAAGCCC-AGTTTACCTAGCACCTAATTTTAAGCCCAGTTTATC-GGCAC-CCAATG-AA-A
1 ATTTAAGCCCGA-TTTACCTAACACCCAATTTTAAGCCCAGTTTATCTGGC-CTCCAAGGCAATA
17088499 TTTAAGCCCAGTTTAGCTG
64 TTTAAGCCCAGTTTAGCTG
17088518 GTTCCCAATA
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
93 17 0.25
94 2 0.03
95 8 0.12
96 42 0.61
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.31
Consensus pattern (96 bp):
ATTTAAGCCCGATTTACCTAACACCCAATTTTAAGCCCAGTTTATCTGGCCTCCAAGGCAATATT
TAAGCCCAGTTTAGCTGACCCATAAAAAAAG
Found at i:17088728 original size:37 final size:36
Alignment explanation
Indices: 17088683--17089217 Score: 190
Period size: 37 Copynumber: 14.5 Consensus size: 36
17088673 AATCACTCTA
*
17088683 TTTGACTTGCGGTGTTGTCACAATCGATTCTTTATT
1 TTTGACTTGCGGTGTTGTCTCAATCGATTCTTTATT
* * * * * *
17088719 TTTGAACTTGCGATATTGTCCCAGTTGTTTTCTTTATT
1 TTTG-ACTTGCGGTGTTGTCTCAATCG-ATTCTTTATT
** *
17088757 ATTTGACTTATGGTGTTGTC-CTAATCAATTCTTTATTT
1 -TTTGACTTGCGGTGTTGTCTC-AATCGATTCTTTA-TT
* * * * *
17088795 TTTGACTTGCGGTATTTTAC-CGATTG-CTCTTTATT
1 TTTGACTTGCGGTGTTGT-CTCAATCGATTCTTTATT
* * *
17088830 ATTTGATTTGCAGTGTTGT-TCTGATC-ATTTTCTTTATTT
1 -TTTGACTTGCGGTGTTGTCTC-AATCGA--TTCTTTA-TT
* * * * *
17088869 TTTGACTTGCAGTGCTATCCCAATTGATTCTTTATT
1 TTTGACTTGCGGTGTTGTCTCAATCGATTCTTTATT
* * * *
17088905 TTTCAACTTGTGGTGTTGTCTCAATCAACTCTTTATTT
1 TTT-GACTTGCGGTGTTGTCTCAATCGATTCTTTA-TT
* * ***
17088943 TTTGAGTTGCAGTGTTGTCTCGGCCG-TTCTTTATT
1 TTTGACTTGCGGTGTTGTCTCAATCGATTCTTTATT
** ** * * *
17088978 ATTCAACTTATGGTGTTGTC-CTGATAGTTTTCTTTATT
1 -TTTGACTTGCGGTGTTGTCTC-AATCG-ATTCTTTATT
* * ** *
17089016 ATTCGACTTGAGGTGTTGTCTCGGTTGATTCTTTATTT
1 -TTTGACTTGCGGTGTTGTCTCAATCGATTCTTTA-TT
* *
17089054 TTTGAGTTGTGGTGTTGTCTCAATC-ATTCTTTATT
1 TTTGACTTGCGGTGTTGTCTCAATCGATTCTTTATT
* * ** * *
17089089 ATTCT-ACTTGTGGAGTTGTCTTGATCGTTTTCTTTCTT
1 -TT-TGACTTGCGGTGTTGTCTCAATCG-ATTCTTTATT
* * * *** *
17089127 ATTCGACTTGTGGTGTTATCTTGGTCAATTCTTTATCT
1 -TTTGACTTGCGGTGTTGTCTCAATCGATTCTTTAT-T
* ** * *
17089165 TTAGACTTGCAATGTTATCCCAATCG-TTCTTTATT
1 TTTGACTTGCGGTGTTGTCTCAATCGATTCTTTATT
**
17089200 ATTCAACTTGCGGTGTTG
1 -TTTGACTTGCGGTGTTG
17089218 CCCTGGTTGT
Statistics
Matches: 369, Mismatches: 100, Indels: 60
0.70 0.19 0.11
Matches are distributed among these distances:
35 9 0.02
36 100 0.27
37 136 0.37
38 115 0.31
39 9 0.02
ACGTcount: A:0.16, C:0.16, G:0.18, T:0.51
Consensus pattern (36 bp):
TTTGACTTGCGGTGTTGTCTCAATCGATTCTTTATT
Found at i:17088974 original size:148 final size:147
Alignment explanation
Indices: 17088748--17089088 Score: 354
Period size: 148 Copynumber: 2.3 Consensus size: 147
17088738 CCCAGTTGTT
* * *
17088748 TTCTTTATTATTTGACTTATGGTGTTGTC-CTAATCAATTCTTTATTTTTTGACTTGCGGTATTT
1 TTCTTTATT-TTTGACTTGTGGTGTTGTCTC-AATCAATTCTTTATTTTTTGACTTGCAGTATTG
** ** * * *
17088812 TACCGATTGCTCTTTATTATTTGA-TT-TGCAGTGTTGTTCTGATCA-TTTTCTTTATTTTTTGA
64 TACCGACCGCTCTTTATTATTCAACTTATG--GTGTTGTCCTGAT-AGTTTTCTTTATTATTCGA
17088874 CTTGCA-GTGCTATCCCAATTGA
126 CTTG-AGGTGCTATCCCAATTGA
* * * *
17088896 TTCTTTATTTTTCAACTTGTGGTGTTGTCTCAATCAACTCTTTATTTTTTGAGTTGCAGTGTTGT
1 TTCTTTATTTTT-GACTTGTGGTGTTGTCTCAATCAATTCTTTATTTTTTGACTTGCAGTATTGT
* *
17088961 -CTCGGCCGTTCTTTATTATTCAACTTATGGTGTTGTCCTGATAGTTTTCTTTATTATTCGACTT
65 AC-CGACCGCTCTTTATTATTCAACTTATGGTGTTGTCCTGATAGTTTTCTTTATTATTCGACTT
* * * **
17089025 GAGGTGTTGTCTCGGTTGA
129 GAGGTGCTATCCCAATTGA
*
17089044 TTCTTTATTTTTTGAGTTGTGGTGTTGTCTCAATC-ATTCTTTATT
1 TTCTTTA-TTTTTGACTTGTGGTGTTGTCTCAATCAATTCTTTATT
17089089 ATTCTACTTG
Statistics
Matches: 161, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
147 15 0.09
148 136 0.84
149 8 0.05
150 2 0.01
ACGTcount: A:0.16, C:0.15, G:0.17, T:0.52
Consensus pattern (147 bp):
TTCTTTATTTTTGACTTGTGGTGTTGTCTCAATCAATTCTTTATTTTTTGACTTGCAGTATTGTA
CCGACCGCTCTTTATTATTCAACTTATGGTGTTGTCCTGATAGTTTTCTTTATTATTCGACTTGA
GGTGCTATCCCAATTGA
Found at i:17089014 original size:38 final size:37
Alignment explanation
Indices: 17088969--17089143 Score: 158
Period size: 38 Copynumber: 4.7 Consensus size: 37
17088959 GTCTCGGCCG
* * *
17088969 TTCTTTATTATTCAACTTATGGTGTTGTCCTGATAGTT
1 TTCTTTATTATTCGACTTGTGGTGTTGT-CTGATAGTA
* * *
17089007 TTCTTTATTATTCGACTTGAGGTGTTGTCTCGGTTG-A
1 TTCTTTATTATTCGACTTGTGGTGTTGTCT-GATAGTA
* * * *
17089044 TTCTTTATTTTTTGAGTTGTGGTGTTGTCTCA-A-TCA
1 TTCTTTATTATTCGACTTGTGGTGTTGTCTGATAGT-A
* * * *
17089080 TTCTTTATTATTCTACTTGTGGAGTTGTCTTGATCGTT
1 TTCTTTATTATTCGACTTGTGGTGTTGTC-TGATAGTA
*
17089118 TTCTTTCTTATTCGACTTGTGGTGTT
1 TTCTTTATTATTCGACTTGTGGTGTT
17089144 ATCTTGGTCA
Statistics
Matches: 107, Mismatches: 24, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
36 25 0.23
37 30 0.28
38 51 0.48
39 1 0.01
ACGTcount: A:0.14, C:0.13, G:0.19, T:0.54
Consensus pattern (37 bp):
TTCTTTATTATTCGACTTGTGGTGTTGTCTGATAGTA
Found at i:17089014 original size:111 final size:111
Alignment explanation
Indices: 17088896--17089247 Score: 389
Period size: 111 Copynumber: 3.2 Consensus size: 111
17088886 TCCCAATTGA
* * ** *
17088896 TTCTTTATTTTTCAACTTGTGGTGTTGTCTCAATCAACTCTTTATTTTTTGAGTTGCAGTGTTGT
1 TTCTTTATTATTCGACTTGTGGTGTTGTCTCGGTCAATTCTTTATTTTTTGAGTTGCAGTGTTGT
*** *
17088961 CTCGGCCGTTCTTTATTATTCAACTTATGGTGTTGTCCTGATAGTT
66 CTCAATCGTTCTTTATTATTCAACTTGTGGTGTTGTCCTGATAGTT
* ** **
17089007 TTCTTTATTATTCGACTTGAGGTGTTGTCTCGGTTGATTCTTTATTTTTTGAGTTGTGGTGTTGT
1 TTCTTTATTATTCGACTTGTGGTGTTGTCTCGGTCAATTCTTTATTTTTTGAGTTGCAGTGTTGT
* * * * *
17089072 CTCAATCATTCTTTATTATTCTACTTGTGGAGTTGTCTTGATCGTT
66 CTCAATCGTTCTTTATTATTCAACTTGTGGTGTTGTCCTGATAGTT
* * * * * * * *
17089118 TTCTTTCTTATTCGACTTGTGGTGTTATCTTGGTCAATTCTTTATCTTTAGACTTGCAATGTTAT
1 TTCTTTATTATTCGACTTGTGGTGTTGTCTCGGTCAATTCTTTATTTTTTGAGTTGCAGTGTTGT
* * * * *
17089183 CCCAATCGTTCTTTATTATTCAACTTGCGGTGTTGCCCTGGTTGTT
66 CTCAATCGTTCTTTATTATTCAACTTGTGGTGTTGTCCTGATAGTT
* * *
17089229 TTTTTTATTTTTTGACTTG
1 TTCTTTATTATTCGACTTG
17089248 CAATAGTCCT
Statistics
Matches: 196, Mismatches: 45, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
111 196 1.00
ACGTcount: A:0.14, C:0.15, G:0.18, T:0.52
Consensus pattern (111 bp):
TTCTTTATTATTCGACTTGTGGTGTTGTCTCGGTCAATTCTTTATTTTTTGAGTTGCAGTGTTGT
CTCAATCGTTCTTTATTATTCAACTTGTGGTGTTGTCCTGATAGTT
Found at i:17089091 original size:73 final size:73
Alignment explanation
Indices: 17088892--17089109 Score: 226
Period size: 73 Copynumber: 3.0 Consensus size: 73
17088882 GCTATCCCAA
* * * *
17088892 TTGATTCTTTATTTTTCAACTTGTGGTGTTGTCTCAATCAACTCTTTATTTTTTGAGTTGCA-GT
1 TTGATTCTTTATTTTTCAACTTGTGGTGTTGTCTCAATC-ATTCTTTATTATTCGACTTG-AGGT
17088956 GTTGTCTCGG
64 GTTGTCTCGG
** * * * *
17088966 CCG-TTCTTTATTATTCAACTTATGGTGTTGTCCTGATAGT-TTTCTTTATTATTCGACTTGAGG
1 TTGATTCTTTATTTTTCAACTTGTGGTGTTGT-CTCA-A-TCATTCTTTATTATTCGACTTGAGG
17089029 TGTTGTCTCGG
63 TGTTGTCTCGG
** * * * *
17089040 TTGATTCTTTATTTTTTGAGTTGTGGTGTTGTCTCAATCATTCTTTATTATTCTACTTGTGGAGT
1 TTGATTCTTTATTTTTCAACTTGTGGTGTTGTCTCAATCATTCTTTATTATTCGACTTGAGGTGT
17089105 TGTCT
66 TGTCT
17089110 TGATCGTTTT
Statistics
Matches: 116, Mismatches: 22, Indels: 13
0.77 0.15 0.09
Matches are distributed among these distances:
72 1 0.01
73 55 0.47
74 35 0.30
75 24 0.21
76 1 0.01
ACGTcount: A:0.15, C:0.14, G:0.19, T:0.52
Consensus pattern (73 bp):
TTGATTCTTTATTTTTCAACTTGTGGTGTTGTCTCAATCATTCTTTATTATTCGACTTGAGGTGT
TGTCTCGG
Found at i:17089149 original size:38 final size:37
Alignment explanation
Indices: 17088894--17089162 Score: 191
Period size: 37 Copynumber: 7.3 Consensus size: 37
17088884 TATCCCAATT
* * **
17088894 GATTCTTTATTTTTCAACTTGTGGTGTTGTCTCAATC
1 GATTCTTTATTATTCGACTTGTGGTGTTGTCTTGATC
* * * * * ** * **
17088931 AACTCTTTATTTTTTGAGTTGCAGTGTTGTCTCGGCC
1 GATTCTTTATTATTCGACTTGTGGTGTTGTCTTGATC
* * * *
17088968 G-TTCTTTATTATTCAACTTATGGTGTTGTCCTGATA
1 GATTCTTTATTATTCGACTTGTGGTGTTGTCTTGATC
* * * * *
17089004 GTTTTCTTTATTATTCGACTTGAGGTGTTGTCTCGGTT
1 G-ATTCTTTATTATTCGACTTGTGGTGTTGTCTTGATC
* * * **
17089042 GATTCTTTATTTTTTGAGTTGTGGTGTTGTCTCAATC
1 GATTCTTTATTATTCGACTTGTGGTGTTGTCTTGATC
* *
17089079 -ATTCTTTATTATTCTACTTGTGGAGTTGTCTTGATC
1 GATTCTTTATTATTCGACTTGTGGTGTTGTCTTGATC
* * * *
17089115 GTTTTCTTTCTTATTCGACTTGTGGTGTTATCTTGGTC
1 G-ATTCTTTATTATTCGACTTGTGGTGTTGTCTTGATC
*
17089153 AATTCTTTAT
1 GATTCTTTAT
17089163 CTTTAGACTT
Statistics
Matches: 173, Mismatches: 55, Indels: 8
0.73 0.23 0.03
Matches are distributed among these distances:
36 52 0.30
37 62 0.36
38 59 0.34
ACGTcount: A:0.14, C:0.14, G:0.19, T:0.52
Consensus pattern (37 bp):
GATTCTTTATTATTCGACTTGTGGTGTTGTCTTGATC
Found at i:17091122 original size:3 final size:3
Alignment explanation
Indices: 17091066--17091109 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
17091056 TCTCATATAT
17091066 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
17091110 GGTGTGTTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:17091805 original size:14 final size:14
Alignment explanation
Indices: 17091786--17091816 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
17091776 AAAAATCGAG
*
17091786 AACCTTAAAATTAA
1 AACCTTAAAATCAA
17091800 AACCTTAAAATCAA
1 AACCTTAAAATCAA
17091814 AAC
1 AAC
17091817 TCCAAACCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.19, G:0.00, T:0.23
Consensus pattern (14 bp):
AACCTTAAAATCAA
Found at i:17091947 original size:22 final size:22
Alignment explanation
Indices: 17091922--17091976 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
17091912 GAAATTGAAT
17091922 CCTTAAAACCCAAAA-CCATAAA
1 CCTTAAAACCCAAAATCCA-AAA
* * *
17091944 CCTTAAAGCCTAAAATTCAAAA
1 CCTTAAAACCCAAAATCCAAAA
*
17091966 CCCTAAAACCC
1 CCTTAAAACCC
17091977 TCCAAACTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
22 24 0.92
23 2 0.08
ACGTcount: A:0.49, C:0.33, G:0.02, T:0.16
Consensus pattern (22 bp):
CCTTAAAACCCAAAATCCAAAA
Found at i:17092000 original size:17 final size:17
Alignment explanation
Indices: 17091932--17092007 Score: 63
Period size: 17 Copynumber: 4.8 Consensus size: 17
17091922 CCTTAAAACC
*
17091932 CAAAACCAT-AAACCTT
1 CAAAACCCTAAAACCTT
*
17091948 --AAAGCCTAAAA--TT
1 CAAAACCCTAAAACCTT
*
17091961 CAAAACCCTAAAACCCT
1 CAAAACCCTAAAACCTT
* * *
17091978 CCAAACTCTAAAGCCTT
1 CAAAACCCTAAAACCTT
17091995 CAAAACCCTAAAA
1 CAAAACCCTAAAA
17092008 TTTTAAATCC
Statistics
Matches: 44, Mismatches: 11, Indels: 9
0.69 0.17 0.14
Matches are distributed among these distances:
13 2 0.05
14 5 0.11
15 13 0.30
17 24 0.55
ACGTcount: A:0.49, C:0.32, G:0.03, T:0.17
Consensus pattern (17 bp):
CAAAACCCTAAAACCTT
Found at i:17092081 original size:16 final size:17
Alignment explanation
Indices: 17092062--17092099 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
17092052 ACCCAGAACT
17092062 CTAAAAATC-CAAAACC
1 CTAAAAATCTCAAAACC
17092078 CT-AAAATCTCAAAACC
1 CTAAAAATCTCAAAACC
*
17092094 TTAAAA
1 CTAAAA
17092100 TTCAAAGTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 6 0.32
16 10 0.53
17 3 0.16
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.18
Consensus pattern (17 bp):
CTAAAAATCTCAAAACC
Found at i:17092091 original size:23 final size:24
Alignment explanation
Indices: 17092038--17092091 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
17092028 AATCTCAATG
* *
17092038 CTCAAAATGCTAAAACCCAGAACT
1 CTCAAAATGCCAAAACCCAGAAAT
*
17092062 CTAAAAAT-CCAAAACCCTA-AAAT
1 CTCAAAATGCCAAAACCC-AGAAAT
17092085 CTCAAAA
1 CTCAAAA
17092092 CCTTAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
23 17 0.68
24 8 0.32
ACGTcount: A:0.52, C:0.28, G:0.04, T:0.17
Consensus pattern (24 bp):
CTCAAAATGCCAAAACCCAGAAAT
Found at i:17092100 original size:16 final size:16
Alignment explanation
Indices: 17091952--17092105 Score: 72
Period size: 15 Copynumber: 9.9 Consensus size: 16
17091942 AACCTTAAAG
17091952 CCTAAAAT-TCAAAAC
1 CCTAAAATCTCAAAAC
* *
17091967 CCTAAAACCCTCCAAAC
1 CCTAAAA-TCTCAAAAC
* **
17091984 TCTAAAGCCTTCAAAAC
1 CCTAAAATC-TCAAAAC
** *
17092001 CCTAAAAT-TTTAAAT
1 CCTAAAATCTCAAAAC
17092016 CCTAAAAT-TCAAAA-
1 CCTAAAATCTCAAAAC
* * *
17092030 TCT-CAATGCTCAAAAT
1 CCTAAAAT-CTCAAAAC
* * *
17092046 GCTAAAA-CCCAGAAC
1 CCTAAAATCTCAAAAC
*
17092061 TCTAAAAATC-CAAAAC
1 CCT-AAAATCTCAAAAC
17092077 CCTAAAATCTCAAAAC
1 CCTAAAATCTCAAAAC
*
17092093 CTTAAAAT-TCAAA
1 CCTAAAATCTCAAA
17092106 GTCCCAACAC
Statistics
Matches: 105, Mismatches: 24, Indels: 20
0.70 0.16 0.13
Matches are distributed among these distances:
13 3 0.03
14 2 0.02
15 47 0.45
16 28 0.27
17 25 0.24
ACGTcount: A:0.48, C:0.27, G:0.03, T:0.22
Consensus pattern (16 bp):
CCTAAAATCTCAAAAC
Found at i:17095932 original size:43 final size:43
Alignment explanation
Indices: 17095868--17096002 Score: 130
Period size: 43 Copynumber: 3.1 Consensus size: 43
17095858 TAGAGAATTC
* * * **
17095868 TAATTTAAAATTGTTTAGCCTCTATATAGAGGAGCTTATTTCT
1 TAATTTAAAGTTGTCTAGCCTCTATATAGAGAAGCCAATTTCT
* *
17095911 TAGTTTAAAGTTGTCTAGCCTCTGTATAGAGAAGCCAATTTCT
1 TAATTTAAAGTTGTCTAGCCTCTATATAGAGAAGCCAATTTCT
* * * * *
17095954 TAATTTCAAGTTGTTTAACCT-TTTCATAGAGGAGTCC-ATTTCT
1 TAATTTAAAGTTGTCTAGCCTCTAT-ATAGAGAAG-CCAATTTCT
17095997 TAATTT
1 TAATTT
17096003 GTTTTATCTT
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 2 0.03
43 73 0.95
44 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.43
Consensus pattern (43 bp):
TAATTTAAAGTTGTCTAGCCTCTATATAGAGAAGCCAATTTCT
Found at i:17097485 original size:11 final size:10
Alignment explanation
Indices: 17097464--17097502 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
17097454 TTATTATTTA
*
17097464 TTTTATTTTT
1 TTTTCTTTTT
17097474 TTTTCTTTTT
1 TTTTCTTTTT
17097484 TTTTC-TTTT
1 TTTTCTTTTT
*
17097493 CTTTCTTTTT
1 TTTTCTTTTT
17097503 CTAGCAGCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 8 0.31
10 18 0.69
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:17097501 original size:15 final size:15
Alignment explanation
Indices: 17097469--17097504 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
17097459 ATTTATTTTA
*
17097469 TTTTT-TTTTCTTTT
1 TTTTTCTTTTCTTTC
17097483 TTTTTCTTTTCTTTC
1 TTTTTCTTTTCTTTC
17097498 TTTTTCT
1 TTTTTCT
17097505 AGCAGCGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTTCTTTTCTTTC
Found at i:17098015 original size:275 final size:275
Alignment explanation
Indices: 17097611--17098160 Score: 940
Period size: 275 Copynumber: 2.0 Consensus size: 275
17097601 CCACCAAAAT
* * *
17097611 CTTAAATTTTCTAGGATTTTGATCTTCTTTTGCTTTATAAATGAACAACGAATCCGAAAACGAAA
1 CTTAAATTTTCTAGAATTTTGATCTTCTTTTACTCTATAAATGAACAACGAATCCGAAAACGAAA
* * *
17097676 AGAGGGAGACCTTAAAAAAAAAGGGTCTCCAGAATAAAAAAAATTTTTCTACCAAAAAAAAAACC
66 AGAGGGAGACCCTAAAAAAAAAGGGTCTCCAGAATAAAAAAAAATTTTCTACAAAAAAAAAAACC
* * *
17097741 ATGCAAACAAAAATCATAGTCCTTGTTGATTAGGCGAGGAATCCAATGCCAAGTAAGACCTGCAA
131 ATACAAACAAAAATCATAGTCCTTGTTGATTAGACGAGGAATCCAATGCCAAGTAAGACCTACAA
*
17097806 AAACAAAAAATACATCAGTTGTGGTTTATAAAGAAAAAAAAGAAAGAAGACAAACTTTGAGCCTT
196 AAACAAAAAATACATCAGTTGTGGTTTATAAAGAAAAAAAAGAAAGAAGACAAACTTTGAGCCCT
17097871 GATCTATGTCAATCG
261 GATCTATGTCAATCG
* *
17097886 CTTAAATTTTCTAGAATTTTGGTCTTCTTTTACTCTATAAATGAACAACGAATTCGAAAACGAAA
1 CTTAAATTTTCTAGAATTTTGATCTTCTTTTACTCTATAAATGAACAACGAATCCGAAAACGAAA
17097951 AGAGGGAGACCCT-AAAAAAAAGGGTCTCCAGAATAAAAAAAAATTTTCTAGCAAAAAAAAAAAC
66 AGAGGGAGACCCTAAAAAAAAAGGGTCTCCAGAATAAAAAAAAATTTTCTA-CAAAAAAAAAAAC
* *
17098015 CATACAAACAAAAATCATAGTCCTTGTTGATTAGATGAGGAATCCAGTGCCAAGTAAGACCTACA
130 CATACAAACAAAAATCATAGTCCTTGTTGATTAGACGAGGAATCCAATGCCAAGTAAGACCTACA
*
17098080 AAAACAAAAAATACATCAGTTGTGGTTTGTAAAGAAAAAAAAGAAAGAAGACAAACTTTGAGCCC
195 AAAACAAAAAATACATCAGTTGTGGTTTATAAAGAAAAAAAAGAAAGAAGACAAACTTTGAGCCC
*
17098145 TGATCTATGTCGATCG
260 TGATCTATGTCAATCG
17098161 AGGCTATTTC
Statistics
Matches: 258, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
274 36 0.14
275 222 0.86
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (275 bp):
CTTAAATTTTCTAGAATTTTGATCTTCTTTTACTCTATAAATGAACAACGAATCCGAAAACGAAA
AGAGGGAGACCCTAAAAAAAAAGGGTCTCCAGAATAAAAAAAAATTTTCTACAAAAAAAAAAACC
ATACAAACAAAAATCATAGTCCTTGTTGATTAGACGAGGAATCCAATGCCAAGTAAGACCTACAA
AAACAAAAAATACATCAGTTGTGGTTTATAAAGAAAAAAAAGAAAGAAGACAAACTTTGAGCCCT
GATCTATGTCAATCG
Found at i:17099985 original size:23 final size:22
Alignment explanation
Indices: 17099951--17100001 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 22
17099941 TCAAGCAACC
17099951 AAAAAACAAAAACAAAACACAA
1 AAAAAACAAAAACAAAACACAA
* *
17099973 AAAAAATCGAAAACAAAACATAA
1 AAAAAA-CAAAAACAAAACACAA
17099996 AAAAAA
1 AAAAAA
17100002 AATTTCACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 6 0.23
23 20 0.77
ACGTcount: A:0.80, C:0.14, G:0.02, T:0.04
Consensus pattern (22 bp):
AAAAAACAAAAACAAAACACAA
Found at i:17103424 original size:19 final size:19
Alignment explanation
Indices: 17103402--17103441 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
17103392 TCAAAAAGAG
*
17103402 AAAGTGAAAAA-AAAAGTAA
1 AAAGT-AAAAATAAAAATAA
17103421 AAAGTAAAAATAAAAATAA
1 AAAGTAAAAATAAAAATAA
17103440 AA
1 AA
17103442 TGAGAGGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (19 bp):
AAAGTAAAAATAAAAATAA
Found at i:17103766 original size:18 final size:17
Alignment explanation
Indices: 17103745--17103779 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
17103735 AGCAAAAGTG
17103745 GAAGCAAAAAAAAAAAGA
1 GAAG-AAAAAAAAAAAGA
*
17103763 GAAGAAAGAAAAAAAGA
1 GAAGAAAAAAAAAAAGA
17103780 TTATTGGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.77, C:0.03, G:0.20, T:0.00
Consensus pattern (17 bp):
GAAGAAAAAAAAAAAGA
Found at i:17104103 original size:12 final size:11
Alignment explanation
Indices: 17104086--17104137 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
17104076 ATGAAATCGT
17104086 AAAAAAAAAA-
1 AAAAAAAAAAG
* *
17104096 ACAAAAAAAGG
1 AAAAAAAAAAG
17104107 AAAAAAAAAAG
1 AAAAAAAAAAG
17104118 AAAGAAAAATAAG
1 AAA-AAAAA-AAG
17104131 AGAAAAA
1 A-AAAAA
17104138 TGGAAAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
10 8 0.24
11 12 0.35
12 5 0.15
13 7 0.21
14 2 0.06
ACGTcount: A:0.85, C:0.02, G:0.12, T:0.02
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:17104125 original size:24 final size:25
Alignment explanation
Indices: 17104086--17104137 Score: 72
Period size: 23 Copynumber: 2.1 Consensus size: 25
17104076 ATGAAATCGT
17104086 AAAAAAAAAAACAAAAA-AAG-GAA
1 AAAAAAAAAAACAAAAATAAGAGAA
*
17104109 AAAAAAAAGAAAGAAAAATAAGAGAA
1 AAAAAAAA-AAACAAAAATAAGAGAA
17104135 AAA
1 AAA
17104138 TGGAAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 8 0.32
24 8 0.32
25 3 0.12
26 6 0.24
ACGTcount: A:0.85, C:0.02, G:0.12, T:0.02
Consensus pattern (25 bp):
AAAAAAAAAAACAAAAATAAGAGAA
Found at i:17104967 original size:46 final size:46
Alignment explanation
Indices: 17104902--17104989 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
17104892 ACTTTGAAAA
* * *
17104902 TTTTAAGAAAAGAAGATTTTGGGCAGTTGCATATCTTGACTTATTT
1 TTTTAAGAAAAGAAAATTTTGAGCAGTTGAATATCTTGACTTATTT
* * *
17104948 TTTTAAGAGAAGAAAATTTTGAGCATTTGAATATTTTGACTT
1 TTTTAAGAAAAGAAAATTTTGAGCAGTTGAATATCTTGACTT
17104990 TGCATTTGCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.42
Consensus pattern (46 bp):
TTTTAAGAAAAGAAAATTTTGAGCAGTTGAATATCTTGACTTATTT
Found at i:17105434 original size:44 final size:41
Alignment explanation
Indices: 17105365--17105456 Score: 121
Period size: 43 Copynumber: 2.2 Consensus size: 41
17105355 TCACTCGGTA
* *
17105365 GTGATATCTGAGTTTAAAGTTTGAATTTACATTCTTCTCGATG
1 GTGATATCCGAGTTTAAAGTATGAATTT-CATT-TTCTCGATG
* *
17105408 GTGATATCCGAGTATTAAAGTATGAATTTCATTTTCTTGGTG
1 GTGATATCCGAGT-TTAAAGTATGAATTTCATTTTCTCGATG
17105450 GTGATAT
1 GTGATAT
17105457 TTTAGGCATT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
42 14 0.32
43 16 0.36
44 14 0.32
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (41 bp):
GTGATATCCGAGTTTAAAGTATGAATTTCATTTTCTCGATG
Found at i:17105840 original size:99 final size:98
Alignment explanation
Indices: 17105620--17106481 Score: 795
Period size: 99 Copynumber: 8.7 Consensus size: 98
17105610 GCATTTTTTT
* * * * * * *
17105620 GGTGGCGATATTCAAAGTCATTTGCATATTCTCAGCGGTGATAT-CTAGGTGTTAAGGTTTGATT
1 GGTGG-GATATCCGAAGTCATTTGCATCTTCTCGGTGGTGATATCCGA-GTGTTAAAGTTTGATT
* * *
17105684 TGCA-TTTCTCAATAGTGATATTTGAGTTTCCTTC
64 TGCATTTTCTCGATGGTGATATTCGAGTTTCCTTC
* * * * * *
17105718 GGTGATGATATCCAAAGTCATTTGCATATTTTCGGTGGTTATATCCGAGTGTTAAGGTTTGATTT
1 GGTG-GGATATCCGAAGTCATTTGCATCTTCTCGGTGGTGATATCCGAGTGTTAAAGTTTGATTT
*
17105783 ACATTTTCTCGATGGTGATATTCGAGTTTCCTTC
65 GCATTTTCTCGATGGTGATATTCGAGTTTCCTTC
* * * ** *** *
17105817 GGTAGGGATATCCGAAGTCATTTGCATCTTTTCAGTGGTGATAT-TGAGCATTAAAAAATCATTT
1 GGT-GGGATATCCGAAGTCATTTGCATCTTCTCGGTGGTGATATCCGAGTGTTAAAGTTTGATTT
* * * * *
17105881 GTATTTTTTTGATGGTGATATTTGAATTTCCTTC
65 GCATTTTCTCGATGGTGATATTCGAGTTTCCTTC
* * * * * * * *
17105915 TGTGACGATATCTGAAGTCATTTGTATTTTTTCAGTGCTGATATCCGAGTGTTAAAGTTTGATTT
1 GGTG-GGATATCCGAAGTCATTTGCATCTTCTCGGTGGTGATATCCGAGTGTTAAAGTTTGATTT
*
17105980 GTATTTTCTCGATGGTGATATTCGAGTTTCCTTC
65 GCATTTTCTCGATGGTGATATTCGAGTTTCCTTC
* * *
17106014 GGTGGTGATATCCAAAGTCATTTGCATCTTCTCGGTGGTGATGGT-CGAGTGTTAAGGTTTGATT
1 GGTGG-GATATCCGAAGTCATTTGCATCTTCTCGGTGGTGAT-ATCCGAGTGTTAAAGTTTGATT
* * *
17106078 TGCATTTTTTCGATGGTGACATTCGAGTTTCCTTT
64 TGCATTTTCTCGATGGTGATATTCGAGTTTCCTTC
** * * * ** **
17106113 GGTAGGGATATTTGAAGCCATTTGTATCTTCTCAGTGGTGATATTTGAGCT-TTAAAAAATT-AT
1 GGT-GGGATATCCGAAGTCATTTGCATCTTCTCGGTGGTGATATCCGAG-TGTT-AAAGTTTGAT
** *
17106176 TTATATTTTCTCGATGGTGATATTCGAATTTCCTTC
63 TTGCATTTTCTCGATGGTGATATTCGAGTTTCCTTC
* * * * * *
17106212 GATGGCGATATCCAAAGTCATTTGTATTTTCTCGATGGTGATATCCGAGTGTTAAAGTTTAATTT
1 GGTGG-GATATCCGAAGTCATTTGCATCTTCTCGGTGGTGATATCCGAGTGTTAAAGTTTGATTT
17106277 GCATTTTCTCGATGGTGATATTCGAGTTTCCTTC
65 GCATTTTCTCGATGGTGATATTCGAGTTTCCTTC
* * * * ** * * *
17106311 AGTGATGATATCCGAAGTCATTTGCATATTCTCGGTGGTGATATCCGAGTGTCAGGGCTTAAATT
1 GGTG-GGATATCCGAAGTCATTTGCATCTTCTCGGTGGTGATATCCGAGTGTTAAAGTTTGATTT
* *
17106376 ACATTTTCTCGATGGTGATATTC-AATTTCCTTC
65 GCATTTTCTCGATGGTGATATTCGAGTTTCCTTC
* ** ** *** *
17106409 GATGGCGATATCCG-AGTCATTCACATCTTCTCGGTGGTGATATTTGAGTGTTAAAAAATCATTT
1 GGTGG-GATATCCGAAGTCATTTGCATCTTCTCGGTGGTGATATCCGAGTGTTAAAGTTTGATTT
17106473 GCATTTTCT
65 GCATTTTCT
17106482 ACAAGTGTGA
Statistics
Matches: 622, Mismatches: 125, Indels: 35
0.80 0.16 0.04
Matches are distributed among these distances:
97 46 0.07
98 160 0.26
99 407 0.65
100 9 0.01
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.42
Consensus pattern (98 bp):
GGTGGGATATCCGAAGTCATTTGCATCTTCTCGGTGGTGATATCCGAGTGTTAAAGTTTGATTTG
CATTTTCTCGATGGTGATATTCGAGTTTCCTTC
Found at i:17106224 original size:198 final size:197
Alignment explanation
Indices: 17105622--17106481 Score: 888
Period size: 198 Copynumber: 4.4 Consensus size: 197
17105612 ATTTTTTTGG
* * * * * *
17105622 TGGCGATATTCAAAGTCATTTGCATATTCTCAGCGGTGATATCTAGGTGTTAAGGTTTGATTTGC
1 TGGCGATATCCAAAGTCATTTGCATCTTCTCGGTGGTGATATCGA-GTGTTAAAGTTTGATTTGC
* * * * *
17105687 A-TTTCTCAATAGTGATATTTGAGTTTCCTTCGGTGATGATATCCAAAGTCATTTGCATATTTTC
65 ATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGATGATATCCGAAGTCATTTGCATATTCTC
* * * *
17105751 GGTGGTTATATCCGAGTGTTAAGGTTTGATTTACATTTTCTCGATGGTGATATTCGAGTTTCCTT
130 AGTGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTCTCGATGGTGATATTCGAATTTCCTT
*
17105816 CGG
195 CGA
* * * * ** *** * *
17105819 TAGG-GATATCCGAAGTCATTTGCATCTTTTCAGTGGTGATATTGAGCATTAAAAAATCATTTGT
1 T-GGCGATATCCAAAGTCATTTGCATCTTCTCGGTGGTGATATCGAGTGTTAAAGTTTGATTTGC
* * * * * * * * * *
17105883 ATTTTTTTGATGGTGATATTTGAATTTCCTTCTGTGACGATATCTGAAGTCATTTGTATTTTTTC
65 ATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGATGATATCCGAAGTCATTTGCATATTCTC
* ** *
17105948 AGTGCTGATATCCGAGTGTTAAAGTTTGATTTGTATTTTCTCGATGGTGATATTCGAGTTTCCTT
130 AGTGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTCTCGATGGTGATATTCGAATTTCCTT
*
17106013 CGG
195 CGA
* * *
17106016 TGGTGATATCCAAAGTCATTTGCATCTTCTCGGTGGTGATGGTCGAGTGTTAAGGTTTGATTTGC
1 TGGCGATATCCAAAGTCATTTGCATCTTCTCGGTGGTGAT-ATCGAGTGTTAAAGTTTGATTTGC
* * * * ** * * *
17106081 ATTTTTTCGATGGTGACATTCGAGTTTCCTTTGGT-AGGGATATTTGAAGCCATTTGTATCTTCT
65 ATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGA-TGATATCCGAAGTCATTTGCATATTCT
** ** *
17106145 CAGTGGTGATATTTGAGCT-TTAAAAAATT-ATTTATATTTTCTCGATGGTGATATTCGAATTTC
129 CAGTGGTGATATCCGAG-TGTT-AAAGTTTGATTTACATTTTCTCGATGGTGATATTCGAATTTC
17106208 CTTCGA
192 CTTCGA
* * * *
17106214 TGGCGATATCCAAAGTCATTTGTATTTTCTCGATGGTGATATCCGAGTGTTAAAGTTTAATTTGC
1 TGGCGATATCCAAAGTCATTTGCATCTTCTCGGTGGTGATAT-CGAGTGTTAAAGTTTGATTTGC
*
17106279 ATTTTCTCGATGGTGATATTCGAGTTTCCTTCAGTGATGATATCCGAAGTCATTTGCATATTCTC
65 ATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGATGATATCCGAAGTCATTTGCATATTCTC
* * ** * * *
17106344 GGTGGTGATATCCGAGTGTCAGGGCTTAAATTACATTTTCTCGATGGTGATATTC-AATTTCCTT
130 AGTGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTCTCGATGGTGATATTCGAATTTCCTT
17106408 CGA
195 CGA
* ** * *** *
17106411 TGGCGATATCC-GAGTCATTCACATCTTCTCGGTGGTGATATTTGAGTGTTAAAAAATCATTTGC
1 TGGCGATATCCAAAGTCATTTGCATCTTCTCGGTGGTGATA-TCGAGTGTTAAAGTTTGATTTGC
17106475 ATTTTCT
65 ATTTTCT
17106482 ACAAGTGTGA
Statistics
Matches: 549, Mismatches: 102, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
196 61 0.11
197 213 0.39
198 268 0.49
199 7 0.01
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.42
Consensus pattern (197 bp):
TGGCGATATCCAAAGTCATTTGCATCTTCTCGGTGGTGATATCGAGTGTTAAAGTTTGATTTGCA
TTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGATGATATCCGAAGTCATTTGCATATTCTCA
GTGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTCTCGATGGTGATATTCGAATTTCCTTC
GA
Found at i:17106755 original size:50 final size:49
Alignment explanation
Indices: 17106583--17106765 Score: 237
Period size: 48 Copynumber: 3.8 Consensus size: 49
17106573 AATGGTTCAA
*
17106583 TTTAAAGTTGTTGAGCCTCTACTTAGAAGAGCTTTTT-CAAGATGAATT
1 TTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCCAAGATGAATT
** * * *
17106631 TTTAAAGTTAATGAGCATCTACTTAGAGAAGCCTTTTCCAAGATGAA-T
1 TTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCCAAGATGAATT
* *
17106679 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCCTAGATGAATTT
1 TTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCCAAGATGAA-TT
* *
17106729 TTTAAAGTTGTTAAACCTCTTA-TTAGAGGAGCTTTTT
1 TTTAAAGTTGTTGAGCCTC-TACTTAGAGGAGCTTTTT
17106766 AAATTAAAAA
Statistics
Matches: 115, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
48 72 0.63
49 9 0.08
50 33 0.29
51 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.40
Consensus pattern (49 bp):
TTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCCAAGATGAATT
Found at i:17106938 original size:11 final size:11
Alignment explanation
Indices: 17106903--17106937 Score: 56
Period size: 10 Copynumber: 3.4 Consensus size: 11
17106893 TATTTTATTA
17106903 TTTT-TCTTTT
1 TTTTCTCTTTT
17106913 TTTTCTCTTTT
1 TTTTCTCTTTT
17106924 TTTTCT-TTTT
1 TTTTCTCTTTT
17106934 TTTT
1 TTTT
17106938 TGGTAGCGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 12 0.50
11 12 0.50
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (11 bp):
TTTTCTCTTTT
Found at i:17107034 original size:22 final size:22
Alignment explanation
Indices: 17106983--17107035 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
17106973 ATCAACAGCC
* * *
17106983 CTGACAGCCATCGACAATCGTT
1 CTGACAGTCACCGACAATCATT
17107005 CTGACAGTCACCGACAATCATT
1 CTGACAGTCACCGACAATCATT
*
17107027 TTGACAGTC
1 CTGACAGTC
17107036 GGTGGCCACC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (22 bp):
CTGACAGTCACCGACAATCATT
Found at i:17107875 original size:13 final size:15
Alignment explanation
Indices: 17107845--17107889 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 15
17107835 TTTTTAGATT
17107845 TTTTTATATATT-AT-
1 TTTTTAT-TATTAATA
17107859 TTTTTATT-TTAA-A
1 TTTTTATTATTAATA
17107872 TTTTTATTATTAATA
1 TTTTTATTATTAATA
17107887 TTT
1 TTT
17107890 ATACATGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 2 0.07
13 10 0.37
14 11 0.41
15 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTATTATTAATA
Found at i:17107890 original size:13 final size:13
Alignment explanation
Indices: 17107845--17107891 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
17107835 TTTTTAGATT
*
17107845 TTTTTATATATTAT
1 TTTTTAT-TATTAA
17107859 TTTTTATT-TTAAA
1 TTTTTATTATT-AA
17107872 TTTTTATTATTAA
1 TTTTTATTATTAA
*
17107885 TATTTAT
1 TTTTTAT
17107892 ACATGTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 2 0.07
13 18 0.62
14 9 0.31
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTATTATTAA
Found at i:17114683 original size:196 final size:189
Alignment explanation
Indices: 17114366--17114721 Score: 525
Period size: 196 Copynumber: 1.8 Consensus size: 189
17114356 TTATTAAATG
*
17114366 AATTTTTTGAATAAATTATTTAATTTAATATTTTGAATAATTATTTAACTTCAAAACAAAATCTA
1 AATTTTTTGAATAAATTATTTAATTTAATATTTTGAATAATTATTTAAATTCAAAACAAAATCTA
* * * *
17114431 TCTAAGATTGAAAATTTTGTATAAATTTTAAATTCAAATATATTAAATCATAATTTATCTTTTTT
66 TCAAAGATTGAAAATTTAGCATAAATTTTAAATTCAAATATATTAAATCATAATTTATC--ATTT
*
17114496 TTTAAAATTTAATCAT-AGTTTCAAATATATATACTTAATAAATTTTTATTTTTTGCCAAACT
129 TTT-AAATTTAATCATGA-TTCCAAATATATATACTTAATAAATTTTTATTTTTTGCCAAACT
* * * *
17114558 AATTTTATTTAATAAATTATTTAAATTTAATATTTTTAGATAATTATTTAAATTTAAATCAAAAT
1 AATTTT-TTGAATAAATTATTT-AATTTAATATTTTGA-ATAATTATTTAAATTCAAAACAAAAT
*
17114623 CTATCAAAAGATTGAAAATTTAGCATAAATTTTAAATTCAAATATATTAAATCTTAATTTATCAT
63 CTATC-AAAGATTGAAAATTTAGCATAAATTTTAAATTCAAATATATTAAATCATAATTTATCAT
*
17114688 TTTTTCAATTTAATCATGATTCCAAATATATATA
127 TTTTTAAATTTAATCATGATTCCAAATATATATA
17114722 GATTTATTAA
Statistics
Matches: 147, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
192 6 0.04
193 39 0.27
194 21 0.14
195 28 0.19
196 53 0.36
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (189 bp):
AATTTTTTGAATAAATTATTTAATTTAATATTTTGAATAATTATTTAAATTCAAAACAAAATCTA
TCAAAGATTGAAAATTTAGCATAAATTTTAAATTCAAATATATTAAATCATAATTTATCATTTTT
TAAATTTAATCATGATTCCAAATATATATACTTAATAAATTTTTATTTTTTGCCAAACT
Found at i:17119685 original size:27 final size:30
Alignment explanation
Indices: 17119654--17119714 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 30
17119644 CATTTCAGTA
* *
17119654 TAATATTAATAA-TTTT-AACAATAA-TAT
1 TAATAATAATAATTTTTAAAAAATAATTAT
17119681 TAATAATAATAATTTTTAAAAAATAATTAT
1 TAATAATAATAATTTTTAAAAAATAATTAT
17119711 TAAT
1 TAAT
17119715 TATATAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 11 0.38
28 4 0.14
29 7 0.24
30 7 0.24
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (30 bp):
TAATAATAATAATTTTTAAAAAATAATTAT
Found at i:17119827 original size:23 final size:22
Alignment explanation
Indices: 17119801--17119874 Score: 64
Period size: 21 Copynumber: 3.3 Consensus size: 22
17119791 GCCCCCGACT
*
17119801 AGCCACCTTACAGCCC-TCTGACC
1 AGCCACCTTACAGCCCACCT-A-C
* *
17119824 AGCCCCCTGTTCAGCCCACCTAC
1 AGCCACCT-TACAGCCCACCTAC
17119847 AGCCACC-TACAG-CCACCCTAC
1 AGCCACCTTACAGCCCA-CCTAC
17119868 AGCCACC
1 AGCCACC
17119875 CAGATCCCCT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
20 3 0.07
21 16 0.37
23 14 0.33
24 8 0.19
25 2 0.05
ACGTcount: A:0.23, C:0.51, G:0.12, T:0.14
Consensus pattern (22 bp):
AGCCACCTTACAGCCCACCTAC
Found at i:17119854 original size:10 final size:10
Alignment explanation
Indices: 17119839--17119874 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
17119829 CCTGTTCAGC
17119839 CCACCTACAG
1 CCACCTACAG
17119849 CCACCTACAG
1 CCACCTACAG
17119859 CCACCCTACAG
1 CCA-CCTACAG
17119870 CCACC
1 CCACC
17119875 CAGATCCCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.28, C:0.56, G:0.08, T:0.08
Consensus pattern (10 bp):
CCACCTACAG
Found at i:17119866 original size:11 final size:11
Alignment explanation
Indices: 17119842--17119875 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
17119832 GTTCAGCCCA
17119842 CCTACAGCCA-
1 CCTACAGCCAC
17119852 CCTACAGCCAC
1 CCTACAGCCAC
17119863 CCTACAGCCAC
1 CCTACAGCCAC
17119874 CC
1 CC
17119876 AGATCCCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.26, C:0.56, G:0.09, T:0.09
Consensus pattern (11 bp):
CCTACAGCCAC
Found at i:17121259 original size:8 final size:8
Alignment explanation
Indices: 17121246--17121288 Score: 72
Period size: 8 Copynumber: 5.6 Consensus size: 8
17121236 CTCTAAAACC
17121246 CCTAAAAT
1 CCTAAAAT
17121254 CCT-AAAT
1 CCTAAAAT
17121261 CCTAAAAT
1 CCTAAAAT
17121269 CC-AAAAT
1 CCTAAAAT
17121276 CCTAAAAT
1 CCTAAAAT
17121284 CCTAA
1 CCTAA
17121289 GGACACGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 14 0.42
8 19 0.58
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (8 bp):
CCTAAAAT
Found at i:17121262 original size:7 final size:7
Alignment explanation
Indices: 17121250--17121288 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
17121240 AAAACCCCTA
17121250 AAATCCT
1 AAATCCT
17121257 AAATCCT
1 AAATCCT
*
17121264 AAAATCCA
1 -AAATCCT
17121272 AAATCCT
1 AAATCCT
17121279 AAAATCCT
1 -AAATCCT
17121287 AA
1 AA
17121289 GGACACGTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 15 0.54
8 13 0.46
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (7 bp):
AAATCCT
Found at i:17121266 original size:15 final size:15
Alignment explanation
Indices: 17121246--17121288 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
17121236 CTCTAAAACC
17121246 CCTAAAATCCTAAAT
1 CCTAAAATCCTAAAT
*
17121261 CCTAAAATCCAAAAT
1 CCTAAAATCCTAAAT
17121276 CCTAAAATCCTAA
1 CCTAAAATCCTAA
17121289 GGACACGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (15 bp):
CCTAAAATCCTAAAT
Found at i:17129611 original size:41 final size:41
Alignment explanation
Indices: 17129515--17129619 Score: 126
Period size: 41 Copynumber: 2.6 Consensus size: 41
17129505 TTAAAGTTTT
*
17129515 AAAGTCTCTGTTTAAGAAGAACCATTCTCAATCAAGATTTC
1 AAAGTCTCTGTTTAAGAGGAACCATTCTCAATCAAGATTTC
* * *
17129556 AAAGCCTATATTTAAGAGGAACCAATT-TCAATCCAA-ATTTC
1 AAAGTCTCTGTTTAAGAGGAACC-ATTCTCAAT-CAAGATTTC
17129597 AAAGTCTCTGTTTAA-AGGGAACC
1 AAAGTCTCTGTTTAAGA-GGAACC
17129620 TTCCTCAGAA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
40 1 0.02
41 47 0.87
42 6 0.11
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (41 bp):
AAAGTCTCTGTTTAAGAGGAACCATTCTCAATCAAGATTTC
Found at i:17129823 original size:121 final size:121
Alignment explanation
Indices: 17129677--17130244 Score: 987
Period size: 121 Copynumber: 4.7 Consensus size: 121
17129667 AAGCCATGTT
17129677 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTGCTCTGATTATGAGGAGCATTCAAAGATTTTGA
1 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTGCTCTGATTATGAGGAGCATTCAAAGATTTTGA
* ** *
17129742 GATTTGTAAGATCTCCGGACATAATCTCTAAAAGCCTCTGTGCACGATTTTCAAGA
66 GATTTGTAAGACCTCCGGACATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGA
17129798 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGGAGCATTCAAAGATTTT-
1 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTG-CTCTGATTATGAGGAGCATTCAAAGATTTTG
*
17129862 ACGATTTGTAAGACCTCCAGG-CATAATCTCTAAAAGCCTCTACGCATGACTTTCAAGA
65 A-GATTTGTAAGACCTCC-GGACATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGA
* *
17129920 TTAAAAGATTTTCAAATTTTTAAAGTTTCATCGCTCTGATTAGGAGGAGCATTCAAAGATTTTGA
1 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTGCTCTGATTATGAGGAGCATTCAAAGATTTTGA
*
17129985 GATTTGTAAGACCTCCGGACATAATCTCTAAAAGCCTCTACGCATGACTTTCAAGA
66 GATTTGTAAGACCTCCGGACATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGA
*
17130041 TTAAAAGATTTTCAAATTTTTAAAGTTTCATCGCTCTGATTATGAGGAGCATTCAAAGATTTTGA
1 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTGCTCTGATTATGAGGAGCATTCAAAGATTTTGA
*
17130106 GATTTGTAAGACCTCTGGACATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGA
66 GATTTGTAAGACCTCCGGACATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGA
*
17130162 TTAAAAGATTTTTAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGGAGCATTCAAAGATTTTG
1 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTG-CTCTGATTATGAGGAGCATTCAAAGATTTTG
17130227 AGATTTGTAAGACCTCCG
65 AGATTTGTAAGACCTCCG
17130245 AGCATAAATT
Statistics
Matches: 428, Mismatches: 13, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
120 2 0.00
121 265 0.62
122 159 0.37
123 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (121 bp):
TTAAAAGATTTTCAAATTTTTAAAGTTTCATTGCTCTGATTATGAGGAGCATTCAAAGATTTTGA
GATTTGTAAGACCTCCGGACATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGA
Found at i:17130202 original size:243 final size:243
Alignment explanation
Indices: 17129677--17130244 Score: 989
Period size: 243 Copynumber: 2.3 Consensus size: 243
17129667 AAGCCATGTT
17129677 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTGCTCTGATTATGAGGAGCATTCAAAGATTTTGA
1 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTGCTCTGATTATGAGGAGCATTCAAAGATTTTGA
* ** *
17129742 GATTTGTAAGATCTCCGGACATAATCTCTAAAAGCCTCTGTGCACGATTTTCAAGATTAAAAGAT
66 GATTTGTAAGACCTCCGGACATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGATTAAAAGAT
*
17129807 TTTCAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGGAGCATTCAAAGATTTTACGATTTGTA
131 TTTCAAATTTTTAAAGTTTCATCGCCTCTGATTATGAGGAGCATTCAAAGATTTTACGATTTGTA
*
17129872 AGACCTCCAGGCATAATCTCTAAAAGCCTCTACGCATGACTTTCAAGA
196 AGACCTCCAGGCATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGA
* *
17129920 TTAAAAGATTTTCAAATTTTTAAAGTTTCATCGCTCTGATTAGGAGGAGCATTCAAAGATTTTGA
1 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTGCTCTGATTATGAGGAGCATTCAAAGATTTTGA
*
17129985 GATTTGTAAGACCTCCGGACATAATCTCTAAAAGCCTCTACGCATGACTTTCAAGATTAAAAGAT
66 GATTTGTAAGACCTCCGGACATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGATTAAAAGAT
17130050 TTTCAAATTTTTAAAGTTTCATCG-CTCTGATTATGAGGAGCATTCAAAGATTTTGA-GATTTGT
131 TTTCAAATTTTTAAAGTTTCATCGCCTCTGATTATGAGGAGCATTCAAAGATTTT-ACGATTTGT
*
17130113 AAGACCT-CTGGACATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGA
195 AAGACCTCCAGG-CATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGA
*
17130162 TTAAAAGATTTTTAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGGAGCATTCAAAGATTTTG
1 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTG-CTCTGATTATGAGGAGCATTCAAAGATTTTG
17130227 AGATTTGTAAGACCTCCG
65 AGATTTGTAAGACCTCCG
17130245 AGCATAAATT
Statistics
Matches: 309, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
241 3 0.01
242 111 0.36
243 195 0.63
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (243 bp):
TTAAAAGATTTTCAAATTTTTAAAGTTTCATTGCTCTGATTATGAGGAGCATTCAAAGATTTTGA
GATTTGTAAGACCTCCGGACATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGATTAAAAGAT
TTTCAAATTTTTAAAGTTTCATCGCCTCTGATTATGAGGAGCATTCAAAGATTTTACGATTTGTA
AGACCTCCAGGCATAATCTCTAAAAGCCTCTACGCACGACTTTCAAGA
Found at i:17130436 original size:22 final size:22
Alignment explanation
Indices: 17130411--17130454 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
17130401 GTCGATTCTG
* *
17130411 TAAGACCTCCGGGCATGATTTC
1 TAAGACCACCGGGCATAATTTC
*
17130433 TAAGACCACCGTGCATAATTTC
1 TAAGACCACCGGGCATAATTTC
17130455 GATTTGCGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (22 bp):
TAAGACCACCGGGCATAATTTC
Found at i:17130590 original size:110 final size:110
Alignment explanation
Indices: 17130322--17130761 Score: 542
Period size: 110 Copynumber: 4.0 Consensus size: 110
17130312 GTCGATTCTG
* * * *
17130322 TAAGACTTCCGGGCATAATTTCAATTCGCGATGTTGTCTCGATCGATT-TCTTATTTGTTTGACT
1 TAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCT-TTATTT-TTTGACT
*
17130386 TGCGATATTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTTC
64 TGCGATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTTC
* * * * * *
17130433 TAAGACCACCGTGCATAATTTCGATTTGCGGTGTTATCCTGATCGATTCTTTA-TTCTTGACTTG
1 TAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTTGACTTG
* ** * *
17130497 CGGTGTTATCCTGGTCAATTCTATAAGACCTCCGGGCATGATTCTC
66 CGATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATT-TC
* * * *
17130543 TAAGACCTCCGGGTATAATTTTGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTTGACTTG
1 TAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTTGACTTG
* * * *
17130608 TGGTGTTATCCCAGTCGATTCTGTAAGACCTCCAGACATGATTTC
66 CGATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTTC
* * * * * *
17130653 TAAGATCTTCTGGCATAAATTCGATTCACGATGTTATCCCGATCGATTCTTTATTTTTTAACTTG
1 TAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTTGACTTG
* * *
17130718 CGATGTTATCTCAGTCGATTCTGTAAGACCTCTGGGCATAATTT
66 CGATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTT
17130762 TGATTTACGA
Statistics
Matches: 278, Mismatches: 48, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
109 45 0.16
110 145 0.52
111 87 0.31
112 1 0.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (110 bp):
TAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTTGACTTG
CGATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTTC
Found at i:17130835 original size:90 final size:88
Alignment explanation
Indices: 17130664--17130839 Score: 246
Period size: 90 Copynumber: 2.0 Consensus size: 88
17130654 AAGATCTTCT
17130664 GGCATAAATTCGATTCACGATGTTATCCCGATCGATTCTTTATTTTTTAACTTGCGATGTTATCT
1 GGCATAAATTCGATTCACGATGTTATCCCGATCGATTCTTTATTTTTTAACTTGCGATGTTATCT
17130729 CAGTCGATTCTGTAAGACCTCTG
66 CAGTCGATTCTGTAAGACCTCTG
* * * * * * *
17130752 GGCATAATTTTGATTTACGATGTTGTCTCGATCGATTTCTTATTTTTTTTGACTTGCGATGTTAT
1 GGCATAAATTCGATTCACGATGTTATCCCGATCGA-TTCTT-TATTTTTTAACTTGCGATGTTAT
*
17130817 C-CTAGTTGATTCTGTAAGACCTC
64 CTC-AGTCGATTCTGTAAGACCTC
17130840 CGAACATGAT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
88 30 0.39
89 6 0.08
90 41 0.53
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (88 bp):
GGCATAAATTCGATTCACGATGTTATCCCGATCGATTCTTTATTTTTTAACTTGCGATGTTATCT
CAGTCGATTCTGTAAGACCTCTG
Found at i:17130849 original size:200 final size:198
Alignment explanation
Indices: 17130536--17131035 Score: 643
Period size: 200 Copynumber: 2.5 Consensus size: 198
17130526 CTCCGGGCAT
* * * *
17130536 GATTCTCTAAGACCTCCGGGTATAATTTTGATTCGCGGTGTTATCCCGATCGA-TTCTT-TATCT
1 GATTCTGTAAGACCTCTGGGCATAATTTTGATTCGCGATGTTAT-CCGATCGATTTCTTAT-TCT
* * *
17130599 TTTGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTCCAGACATGATTTCTAAGATCTTCT
64 TTTGACTTGCGGTGTTATCCCAGTCGATTCTGTAAGACCTCCAGACATGATTTCTAAGACCTTCG
* * * * *
17130664 GGCATAAATTCGATTCACGATGTTATCCCGATCGATTCTTTATTTTTTAACTTGCGATGTTATCT
129 GGCATAAATTCGATTCACGATGTTATCACGATCGATTCCTTATCTTTCAACTTGCGATGTTATCC
17130729 CAGTC
194 CAGTC
** * *
17130734 GATTCTGTAAGACCTCTGGGCATAATTTTGATTTACGATGTTGTCTCGATCGATTTCTTATTTTT
1 GATTCTGTAAGACCTCTGGGCATAATTTTGATTCGCGATGTTATC-CGATCGATTTCTTA-TTCT
* * *
17130799 TTTGACTTGCGATGTTATCCTAGTTGATTCTGTAAGACCTCC-GAACATGATTTCTAAGACCTTC
64 TTTGACTTGCGGTGTTATCCCAGTCGATTCTGTAAGACCTCCAG-ACATGATTTCTAAGACCTTC
* * * * * *
17130863 GGGCATAATTTTGATTCGCGATGTTATCATGATCGATTCCTTATCTTTCGACTTGCGGTGTTATC
128 GGGCATAAATTCGATTCACGATGTTATCACGATCGATTCCTTATCTTTCAACTTGCGATGTTATC
17130928 CCAGTC
193 CCAGTC
* *
17130934 GATTCTGTAAGACCT-TCGGGCATAAATTTGATTCGCGATGTTATCCTGATCGATTCCTTA-TCT
1 GATTCTGTAAGACCTCT-GGGCATAATTTTGATTCGCGATGTTATCC-GATCGATTTCTTATTCT
*
17130997 TTCGACTTGCGGTGTTATCCCAGTCGATTCT-TAAGACCT
64 TTTGACTTGCGGTGTTATCCCAGTCGATTCTGTAAGACCT
17131036 TCGGGCATAA
Statistics
Matches: 260, Mismatches: 35, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
197 9 0.03
198 73 0.28
199 8 0.03
200 169 0.65
201 1 0.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.40
Consensus pattern (198 bp):
GATTCTGTAAGACCTCTGGGCATAATTTTGATTCGCGATGTTATCCGATCGATTTCTTATTCTTT
TGACTTGCGGTGTTATCCCAGTCGATTCTGTAAGACCTCCAGACATGATTTCTAAGACCTTCGGG
CATAAATTCGATTCACGATGTTATCACGATCGATTCCTTATCTTTCAACTTGCGATGTTATCCCA
GTC
Found at i:17131079 original size:87 final size:88
Alignment explanation
Indices: 17130853--17131193 Score: 497
Period size: 88 Copynumber: 3.9 Consensus size: 88
17130843 ACATGATTTC
* * *
17130853 TAAGACCTTCGGGCATAATTTTGATTCGCGATGTTATCATGATCGATTCCTTATCTTTCGACTTG
1 TAAGACCTTCGGGCATAAATTCGATTCGCGATGTTATCACGATCGATTCCTTATCTTTCGACTTG
17130918 CGGTGTTATCCCAGTCGATTCTG
66 CGGTGTTATCCCAGTCGATTCTG
*
17130941 TAAGACCTTCGGGCATAAATTTGATTCGCGATGTTATC-CTGATCGATTCCTTATCTTTCGACTT
1 TAAGACCTTCGGGCATAAATTCGATTCGCGATGTTATCAC-GATCGATTCCTTATCTTTCGACTT
17131005 GCGGTGTTATCCCAGTCGATTCT-
65 GCGGTGTTATCCCAGTCGATTCTG
* * * *
17131028 TAAGACCTTCGGGCATAAATTCGATTCGCGGTGTTATCACGATCGATTCCTTATTTTTCAACTCG
1 TAAGACCTTCGGGCATAAATTCGATTCGCGATGTTATCACGATCGATTCCTTATCTTTCGACTTG
** * *
17131093 TAGTATTCTCCCAGTCGATTCTG
66 CGGTGTTATCCCAGTCGATTCTG
* * * * *
17131116 TAAGACCTTCGAGCATAAATTCGATTCGCGATGTTATCTCGATCGATTCATTATTTTTTGACTTG
1 TAAGACCTTCGGGCATAAATTCGATTCGCGATGTTATCACGATCGATTCCTTATCTTTCGACTTG
*
17131181 CGGTGTCATCCCA
66 CGGTGTTATCCCA
17131194 ATCGTTTTGT
Statistics
Matches: 227, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
87 76 0.33
88 151 0.67
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (88 bp):
TAAGACCTTCGGGCATAAATTCGATTCGCGATGTTATCACGATCGATTCCTTATCTTTCGACTTG
CGGTGTTATCCCAGTCGATTCTG
Found at i:17131144 original size:175 final size:175
Alignment explanation
Indices: 17130853--17131193 Score: 513
Period size: 175 Copynumber: 1.9 Consensus size: 175
17130843 ACATGATTTC
* * * * *
17130853 TAAGACCTTCGGGCATAATTTTGATTCGCGATGTTATCATGATCGATTCCTTATCTTTCGACTTG
1 TAAGACCTTCGGGCATAAATTCGATTCGCGATGTTATCACGATCGATTCCTTATCTTTCAACTCG
* * * *
17130918 CGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGGGCATAAATTTGATTCGCGATGTTATC-CTG
66 CAGTATTATCCCAGTCGATTCTGTAAGACCTTCGAGCATAAATTCGATTCGCGATGTTATCTC-G
* *
17130982 ATCGATTCCTTATCTTTCGACTTGCGGTGTTATCCCAGTCGATTCT
130 ATCGATTCATTATCTTTCGACTTGCGGTGTCATCCCAGTCGATTCT
* *
17131028 TAAGACCTTCGGGCATAAATTCGATTCGCGGTGTTATCACGATCGATTCCTTATTTTTCAACTCG
1 TAAGACCTTCGGGCATAAATTCGATTCGCGATGTTATCACGATCGATTCCTTATCTTTCAACTCG
* *
17131093 TAGTATTCTCCCAGTCGATTCTGTAAGACCTTCGAGCATAAATTCGATTCGCGATGTTATCTCGA
66 CAGTATTATCCCAGTCGATTCTGTAAGACCTTCGAGCATAAATTCGATTCGCGATGTTATCTCGA
* *
17131158 TCGATTCATTATTTTTTGACTTGCGGTGTCATCCCA
131 TCGATTCATTATCTTTCGACTTGCGGTGTCATCCCA
17131194 ATCGTTTTGT
Statistics
Matches: 148, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
175 147 0.99
176 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (175 bp):
TAAGACCTTCGGGCATAAATTCGATTCGCGATGTTATCACGATCGATTCCTTATCTTTCAACTCG
CAGTATTATCCCAGTCGATTCTGTAAGACCTTCGAGCATAAATTCGATTCGCGATGTTATCTCGA
TCGATTCATTATCTTTCGACTTGCGGTGTCATCCCAGTCGATTCT
Found at i:17131366 original size:3 final size:3
Alignment explanation
Indices: 17131344--17131436 Score: 52
Period size: 3 Copynumber: 32.3 Consensus size: 3
17131334 TCATTTCAGT
* * * * * * *
17131344 ATA ATA TTA ATA ATT TTA ATA ATA ATA TTA ATA ATA ATA AT- TTT TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
17131391 AAA ATA ATTA TTA ATT AT- ATA A-A ATA ATA A-A ATA ATA A-A ATA
1 ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
17131433 ATA A
1 ATA A
17131437 AAAAACAAAA
Statistics
Matches: 68, Mismatches: 16, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
2 9 0.13
3 57 0.84
4 2 0.03
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
ATA
Found at i:17131376 original size:27 final size:29
Alignment explanation
Indices: 17131345--17131405 Score: 81
Period size: 27 Copynumber: 2.1 Consensus size: 29
17131335 CATTTCAGTA
* *
17131345 TAATATTAATAA-TTTTAATAATAA-TAT
1 TAATAATAATAATTTTTAAAAATAATTAT
17131372 TAATAATAATAATTTTTTAAAAATAATTAT
1 TAATAATAATAA-TTTTTAAAAATAATTAT
17131402 TAAT
1 TAAT
17131406 TATATAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 11 0.38
29 11 0.38
30 7 0.24
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TAATAATAATAATTTTTAAAAATAATTAT
Found at i:17131398 original size:20 final size:19
Alignment explanation
Indices: 17131360--17131436 Score: 63
Period size: 16 Copynumber: 4.2 Consensus size: 19
17131350 TTAATAATTT
* *
17131360 TAATAATAATAT-TAATAA
1 TAATAATTATATAAAATAA
* *
17131378 TAATAATTTTTTAAAAATAA
1 TAATAATTATAT-AAAATAA
*
17131398 TTATTAATTATATAAAATAA
1 -TAATAATTATATAAAATAA
17131418 TAA-AA-TA-ATAAAATAA
1 TAATAATTATATAAAATAA
17131434 TAA
1 TAA
17131437 AAAAACAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
16 12 0.25
17 2 0.04
18 11 0.23
19 2 0.04
20 12 0.25
21 9 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TAATAATTATATAAAATAA
Found at i:17131422 original size:8 final size:8
Alignment explanation
Indices: 17131409--17131438 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
17131399 TATTAATTAT
17131409 ATAAAATA
1 ATAAAATA
17131417 ATAAAATA
1 ATAAAATA
17131425 ATAAAATA
1 ATAAAATA
17131433 ATAAAA
1 ATAAAA
17131439 AAACAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
ATAAAATA
Found at i:17131446 original size:16 final size:17
Alignment explanation
Indices: 17131411--17131468 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 17
17131401 TTAATTATAT
* *
17131411 AAAATAATAAAATAA-T
1 AAAATAATAAAAAAACA
17131427 AAAATAATAAAAAAACA
1 AAAATAATAAAAAAACA
* *
17131444 AAAAAAATAAAAAAGAGA
1 AAAATAATAAAAAA-ACA
17131462 AAAATAA
1 AAAATAA
17131469 AAAGTAGGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
16 14 0.40
17 13 0.37
18 8 0.23
ACGTcount: A:0.81, C:0.02, G:0.03, T:0.14
Consensus pattern (17 bp):
AAAATAATAAAAAAACA
Found at i:17131471 original size:25 final size:25
Alignment explanation
Indices: 17131411--17131471 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
17131401 TTAATTATAT
* *
17131411 AAAATAATAAAATAATAAAATAATAA
1 AAAATAA-AAAAAAATAAAATAAGAA
17131437 AAAA-ACAAAAAAAATAAAA-AAGAGA
1 AAAATA-AAAAAAAATAAAATAAGA-A
17131462 AAAATAAAAA
1 AAAATAAAAA
17131472 GTAGGGTGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
24 3 0.10
25 21 0.70
26 6 0.20
ACGTcount: A:0.82, C:0.02, G:0.03, T:0.13
Consensus pattern (25 bp):
AAAATAAAAAAAAATAAAATAAGAA
Found at i:17132949 original size:15 final size:15
Alignment explanation
Indices: 17132929--17132965 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
17132919 CTCTAAAACC
**
17132929 CCTAAAATCGTAAAT
1 CCTAAAATCCAAAAT
17132944 CCTAAAATCCAAAAT
1 CCTAAAATCCAAAAT
17132959 CCTAAAA
1 CCTAAAA
17132966 ATCCTAAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.51, C:0.24, G:0.03, T:0.22
Consensus pattern (15 bp):
CCTAAAATCCAAAAT
Found at i:17132968 original size:9 final size:8
Alignment explanation
Indices: 17132929--17132972 Score: 56
Period size: 7 Copynumber: 5.6 Consensus size: 8
17132919 CTCTAAAACC
17132929 CCTAAAAT
1 CCTAAAAT
*
17132937 CGT-AAAT
1 CCTAAAAT
17132944 CCTAAAAT
1 CCTAAAAT
17132952 CC-AAAAT
1 CCTAAAAT
17132959 CCTAAAAAT
1 CCT-AAAAT
17132968 CCTAA
1 CCTAA
17132973 GGACAAGTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
7 13 0.42
8 10 0.32
9 8 0.26
ACGTcount: A:0.50, C:0.25, G:0.02, T:0.23
Consensus pattern (8 bp):
CCTAAAAT
Found at i:17134274 original size:21 final size:21
Alignment explanation
Indices: 17134245--17134285 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
17134235 CGAAACTATT
17134245 ATTTAAAAATA-AATTAATTTG
1 ATTTAAAAATACAA-TAATTTG
*
17134266 ATTTTAAAATACAATAATTT
1 ATTTAAAAATACAATAATTT
17134286 AAACTCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
ATTTAAAAATACAATAATTTG
Found at i:17139306 original size:95 final size:95
Alignment explanation
Indices: 17139179--17139654 Score: 694
Period size: 95 Copynumber: 5.0 Consensus size: 95
17139169 TTGAAAGTTT
* * *
17139179 AAAAGGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAAGGCTCCTCTCAACA
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAA-GCTCCTCTCAGCA
*
17139244 GAGGCTTAACAACTTTAAAAATCTCAT-TTG
65 GAGGCTCAACAACTTTAAAAATCTCATCTTG
*
17139274 AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAAGCTCCTCTCAGCAG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAAGCTCCTCTCAGCAG
17139339 AGGCTCAACAACTTT-AAAATCTCATCTTG
66 AGGCTCAACAACTTTAAAAATCTCATCTTG
* * * * *
17139368 GAAAAGCTCCTCTCAGCAAAGGCTCAACGACTTTAAAAATCTCATCTTGGAAAAGCTCATCTCAG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAAT-TC-TCTTGAAAAAGCTCCTCTCAG
17139433 CAGAGGCTCAACAACTTT-AAAAT-TC-TCTTG
63 CAGAGGCTCAACAACTTTAAAAATCTCATCTTG
*
17139463 AAAAAGCTCCTCTCAGCATAGGCTCAACAACTTTAAAATTCTCATATGAAAAAAGCTCCTCTCAG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTC-T-TG-AAAAAGCTCCTCTCAG
*
17139528 CAGAGGCTCAACAACTTTAAAAATTTCATCTTG
63 CAGAGGCTCAACAACTTTAAAAATCTCATCTTG
* * * * *
17139561 GAAAAGCTCCTCTCAGCAGAGGCTCAATAACTTTAAAAATCTCTTGGAAATGCTCCTCTCAGCAG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAAGCTCCTCTCAGCAG
17139626 AGGCTCAACAACTTT-AAAATCTCATCTTG
66 AGGCTCAACAACTTTAAAAATCTCATCTTG
17139655 TTTTCAAATT
Statistics
Matches: 348, Mismatches: 23, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
92 2 0.01
93 13 0.04
94 80 0.23
95 153 0.44
96 11 0.03
97 45 0.13
98 44 0.13
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (95 bp):
AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAAGCTCCTCTCAGCAG
AGGCTCAACAACTTTAAAAATCTCATCTTG
Found at i:17139411 original size:49 final size:48
Alignment explanation
Indices: 17139179--17139654 Score: 666
Period size: 46 Copynumber: 10.0 Consensus size: 48
17139169 TTGAAAGTTT
* *
17139179 AAAAGGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAAT-TC-TCTTG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
* *
17139225 AAAAAGGCTCCTCTCAACAGAGGCTTAACAACTTTAAAAATCTCAT-TTG
1 AAAAA-GCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTCATCTTG
*
17139274 AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAT-TC-TCTTG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
17139320 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
* * *
17139368 GAAAAGCTCCTCTCAGCAAAGGCTCAACGACTTTAAAAATCTCATCTTG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTCATCTTG
* *
17139417 GAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAT-TC-TCTTG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
* *
17139463 AAAAAGCTCCTCTCAGCATAGGCTCAACAACTTTAAAATTCTCAT-ATG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTCATCTTG
*
17139511 AAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTCATCTTG
1 -AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTCATCTTG
* * *
17139561 GAAAAGCTCCTCTCAGCAGAGGCTCAATAACTTTAAAA-ATC-TCTTG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
* *
17139607 GAAATGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
17139655 TTTTCAAATT
Statistics
Matches: 387, Mismatches: 27, Indels: 30
0.87 0.06 0.07
Matches are distributed among these distances:
45 1 0.00
46 128 0.33
47 40 0.10
48 85 0.22
49 126 0.33
50 7 0.02
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (48 bp):
AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
Found at i:17139685 original size:144 final size:142
Alignment explanation
Indices: 17139179--17139654 Score: 735
Period size: 144 Copynumber: 3.3 Consensus size: 142
17139169 TTGAAAGTTT
* * *
17139179 AAAAGGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAAT-TC-TCTTGAAAAAGGCTCCTCTCAA
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAA-GCTCCTCTCAG
* *
17139242 CAGAGGCTTAACAACTTTAAAAATCTCAT-TTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACT
65 CA-AGGCTCAACAACTTTAAAAATCTCATCTTGGAAAAGCTCATCTCAGCAGAGGCTCAACAACT
17139306 TTAAAATTCTCTTG
129 TTAAAATTCTCTTG
*
17139320 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAGC
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCCTCTCAGC
*
17139385 AAAGGCTCAACGACTTTAAAAATCTCATCTTGGAAAAGCTCATCTCAGCAGAGGCTCAACAACTT
66 -AAGGCTCAACAACTTTAAAAATCTCATCTTGGAAAAGCTCATCTCAGCAGAGGCTCAACAACTT
17139450 TAAAATTCTCTTG
130 TAAAATTCTCTTG
* *
17139463 AAAAAGCTCCTCTCAGCATAGGCTCAACAACTTTAAAATTCTCAT-ATGAAAAAAGCTCCTCTCA
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTCATCTTG-AAAAAGCTCCTCTCA
* * *
17139527 GCAGAGGCTCAACAACTTTAAAAATTTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAATAAC
64 GCA-AGGCTCAACAACTTTAAAAATCTCATCTTGGAAAAGCTCATCTCAGCAGAGGCTCAACAAC
*
17139592 TTTAAAAATCTCTTG
128 TTTAAAATTCTCTTG
* *
17139607 GAAATGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
17139655 TTTTCAAATT
Statistics
Matches: 308, Mismatches: 19, Indels: 13
0.91 0.06 0.04
Matches are distributed among these distances:
141 37 0.12
142 37 0.12
143 104 0.34
144 130 0.42
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (142 bp):
AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCCTCTCAGC
AAGGCTCAACAACTTTAAAAATCTCATCTTGGAAAAGCTCATCTCAGCAGAGGCTCAACAACTTT
AAAATTCTCTTG
Found at i:17149065 original size:5 final size:5
Alignment explanation
Indices: 17149043--17149088 Score: 53
Period size: 5 Copynumber: 9.8 Consensus size: 5
17149033 TGTGTGAATT
* *
17149043 TTTTG TTTT- TTAT- TTTTG ATTTG TTTTG TTTTG TTTT- TTTTG TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
17149089 TGACCTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
4 10 0.29
5 25 0.71
ACGTcount: A:0.04, C:0.00, G:0.13, T:0.83
Consensus pattern (5 bp):
TTTTG
Found at i:17150593 original size:18 final size:19
Alignment explanation
Indices: 17150556--17150594 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
17150546 CAAAAATATT
*
17150556 AATAAAATAATATATAAAA
1 AATAAAATAAAATATAAAA
*
17150575 AATAAAA-AAAATTTAAAA
1 AATAAAATAAAATATAAAA
17150593 AA
1 AA
17150595 ATTTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (19 bp):
AATAAAATAAAATATAAAA
Found at i:17153895 original size:26 final size:26
Alignment explanation
Indices: 17153856--17153908 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17153846 TCAATCCGAT
* *
17153856 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17153882 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17153908 C
1 C
17153909 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17156426 original size:26 final size:26
Alignment explanation
Indices: 17156390--17156441 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17156380 CGGTCCGATT
* *
17156390 TTAGGCTAGGAATGAACTCTGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
17156416 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
17156442 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:17156708 original size:897 final size:900
Alignment explanation
Indices: 17155517--17157145 Score: 2688
Period size: 898 Copynumber: 1.8 Consensus size: 900
17155507 CCGGTCTGAT
* *
17155517 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGATACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * *
17155582 CAGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCGACCGGGTCGCCCCCTGCGTGCTGCCGATCT
66 CAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATAGACCGGGTCGCCCCCTGCATGCTGCCGATCC
* * * *
17155647 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTACCACAACCCTCGGTCTGGTCAGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAA
17155712 TCGACGAAACGAGCGGCCGGGCGGACGGGCGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAA
196 TCGACGAAACGAGCGGCCGGGCGGACGGGCGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAA
*
17155777 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
17155842 TTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * ** *
17155907 GACTCGTTTTCTATTTTTTACGACTTTT-GAAACTTTTTGTGGTTCAGGATTTTTTAAAA-TTTT
391 GACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTATTACGGTTCAGGATTTTTCAAAATTTTT
* * *
17155970 TCGGAAGGAATTTTGTTCCC-AAACTTTGTAGACATGATCCTTGTACTTTT-TTTGGCATGCACA
455 TCGAAAGGAATTTTG-GCCCAAAACTTTGTAGACATGATCCTTGTA-TTTTCGTTGGCATGCACA
*
17156033 AAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCAG
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-
*
17156097 TTTCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
17156162 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCATGTACCAGCACCCATCGC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGC
17156227 ACATCATGTGCGCACA-CCCCTGGCCCCGATCGTCGGAACCCCAATGCCATCGGTCAAGTTCTCT
712 ACATCATGTGCGCACAGCCCCTGGCCCCGATCGTCGGAACCCCAATGCCATCGGTCAAGTTCTCT
17156291 GATGATGCTCTGGCGATGGTGCCGTGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAA
777 GATGATGCTCTGGCGATGGTGCCGTGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAA
17156356 TATGTGCTACTGCAACCCTCGATCCGGTCCGATTTTAGGCTAGGAATGAACTCTGTATG
842 TATGTGCTACTGCAACCCTCGATCCGGTCCGATTTTAGGCTAGGAATGAACTCTGTATG
*
17156415 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * *
17156480 CAGCCAGAGGGG-GGGATGCGCAAGCCGGGGATTAG-TCGGGTC-CCCCTCT-CTATGCTGTCGA
66 CAGCCAGAGGGGCAGGATGCGCAAGCCGGGGA-TAGACCGGGTCGCCCC-CTGC-ATGCTGCCGA
* * * * *
17156541 TCCTGCTACCACAACCCTCTGTTTGGTCAGATCTTTGAGTGGGAATAAACTCCGTATGCCTAAGC
128 TCCTGCTACCACAACCCTCGGTCTGGTCAGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGC
* * * * *
17156606 CAA-CAGACGAAATGAGCGGGCGGGCGGGCGGGTGGGCACTATG-TCGGCCAGAGAGATGGGATG
193 CAATC-GACGAAACGAGCGGCCGGGCGGACGGGCGGGCACTATGCT-GGCCAGAGAGACGGGATG
17156669 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAA
256 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAA
*
17156734 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
321 TGCCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
**
17156799 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTATTACGGTTTGGGATTTTTCAAAAT
386 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTATTACGGTTCAGGATTTTTCAAAAT
*
17156864 TTTTTCGAAAGGAGTTTTGGCCCAAAACTTTGTAGACATGATCCTTGTATTTTCGTTGGCATGCA
451 TTTTTCGAAAGGAATTTTGGCCCAAAACTTTGTAGACATGATCCTTGTATTTTCGTTGGCATGCA
17156929 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
516 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
17156994 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
581 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
17157059 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCG
646 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCG
*
17157124 CACATCATGTGCGTACAGCCCC
711 CACATCATGTGCGCACAGCCCC
17157146 CCCCGGCCCC
Statistics
Matches: 675, Mismatches: 45, Indels: 21
0.91 0.06 0.03
Matches are distributed among these distances:
896 11 0.02
897 327 0.48
898 329 0.49
899 8 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATAGACCGGGTCGCCCCCTGCATGCTGCCGATCC
TGCTACCACAACCCTCGGTCTGGTCAGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAA
TCGACGAAACGAGCGGCCGGGCGGACGGGCGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTATTACGGTTCAGGATTTTTCAAAATTTTTT
CGAAAGGAATTTTGGCCCAAAACTTTGTAGACATGATCCTTGTATTTTCGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACAGCCCCTGGCCCCGATCGTCGGAACCCCAATGCCATCGGTCAAGTTCTCTGATG
ATGCTCTGGCGATGGTGCCGTGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAATATG
TGCTACTGCAACCCTCGATCCGGTCCGATTTTAGGCTAGGAATGAACTCTGTATG
Found at i:17161082 original size:26 final size:26
Alignment explanation
Indices: 17161046--17161096 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17161036 GGTTCGATCT
17161046 TAGACTGGGAATGAACTCCATATGCA
1 TAGACTGGGAATGAACTCCATATGCA
*
17161072 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
17161097 TTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:17161470 original size:896 final size:896
Alignment explanation
Indices: 17158409--17162866 Score: 5866
Period size: 895 Copynumber: 5.0 Consensus size: 896
17158399 TCTGATCTTT
* * * **
17158409 GACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTAAACCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
* ** * * **
17158474 CAGA-GGGAGGGATGCGCAAGTTGTGGATCGGCTC--ATCCCCCTCTACGTGCTATCGATCCTAC
66 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGG-TCGGGTCCCCCTCTACGTGCTGCCGATCCTAC
* * * *** * *
17158536 TACCACAACCCTC-GATCCGGTCCGATCTTAGACCATGAATGAACTCCGTATGCCAAAGTCAACC
130 TGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
17158600 GACGAAACGA----GCTGGCGGGCACTATG-CAGAACAGAGAGATGGGATGCGCAAGTCGAT-GA
194 GACGAAACGAGCGGGCGGGCGGGCACTACGCCAG-CCAGAGAGACGGGATGCGCAAGCCG-TGGA
* * * *
17158659 TCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATA
257 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * *
17158724 GATTGTAAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCGTGGCAAGACGACTCGTT
322 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
17158789 TTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTAGGAAGGA
387 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGT
* *
17158854 GTTTTGGCCCCAAA-TTGGTAGACATGATTCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
452 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
17158918 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTT
517 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* **
17158983 TAATTGCTACTGGCTTCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
582 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * *
17159048 GTTTGATGAGGGGTAGGGGCCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATC-T-TGTG
647 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * *
17159111 CACA--CACCC-G----CACGATCACCGGAACCCCAATGCCGCCGGTCAGGATCTCCGACGATGC
712 CACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCAACGATGC
* * * * * *
17159169 TCTGACGATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTCCT
777 TCCGACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * *
17159234 GCCGCAACCCTCAGTCTGATCCGATCTTAGACTAGGAATGAGCTCTGTATGCTTA
842 GCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
17159289 GAATGGGAATGAACTCCATATGCCTAAGTCAACACACGAAACGAGCGTGCGTGCGCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
* *
17159354 CAGAGGGGCGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
66 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
* * * * ** * * * * * *
17159419 ACCACAGCCCTCAATCTAGTCTAATCCTACACTGGGAATGAACACCGTATACCTAAGCCAACTGA
131 GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
17159484 CGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTTGA
196 CG-AA--A-CGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
17159549 TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
257 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * *
17159614 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTAATGGCAAGAAGACTCATT
322 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * *
17159679 TTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTGGGAAGGA
387 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-
* * *
17159744 T-TTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTA
451 TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
17159808 GCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
516 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
17159873 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGGTTTTTAAGGGGGTGTGAGTTCTCGA
581 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
17159938 GGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAATTACCAGCACCCATCGCACATCATGTGC
646 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
17160003 GCACACCGCCCCGGCCACCCCGATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCT-C--C---G
711 GCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCAACGATG
* * *
17160062 ----G-CGATGGTGCCCCGGCGAAGAAAAATGC-GACACCAACACATGCCCAAGCCCAGTATGTG
776 CTCCGACGATGGTGCCCCGGCGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCATGTG
* * *
17160121 CTGTCGCAACCCTC-GGCCTGG-TCTGATCTTATACTGGGAATGAACTCCGTATGCTTA
840 CTGCCGCAACCCTCAGTCC-GGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTA
* ** * *
17160178 GACTGGGAATGAACTCCATATTTCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
* * * * * * * *
17160243 CAGAGGGGCAGGATGCGCAAGCTGGGGATCGATCGGGTCGCCCTCTGCATGCTGCCAATCCTACT
66 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
* * ** * *
17160308 GCTGAAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGA
131 GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
17160373 CGAAATGAGCGGGCGGGTGGGCACTACGCCAGCCAGAGAGACGGGATGCGTAAGCGGTGGATCGG
196 CGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
17160438 TGGGGTGGTAGGTCGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTCTTATGGCTT
261 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * *
17160503 GGAAATTCACATAATGGTCCCTTAAGCCTTCACGTGACA-TTTCATGGTAAGACGACTCGTTTTC
326 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA-AGTTTCATGGCAAGACGACTCGTTTTC
* * *
17160567 TATTTTTCATGATTTTTGAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTCGAAAGGTGTT
390 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTT
* *
17160632 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTCTT-TTGGCATGCACAAAAACATTCAGCT
455 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCT
17160696 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
519 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
17160761 ATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
584 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
17160826 TTGATGAGGAATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCACACATCATGTGCGCA
649 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * *
17160891 CACCCCCCCGGCCCCCCCAATCGTCGAAACGCCAATGTCGCCGGTCAAGTTCTCCAACGATGCTC
714 CACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCAACGATGCTC
* * *
17160956 CGACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCTAC
779 CGACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * *
17161021 CACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCATA
844 CGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
17161074 GACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCATCCGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
* * * * ** * ** *
17161139 CAAAGGGGCGGGATGCGTATGCCGAGGATCGGTCGAGTAACCCTCTACGGGCTGTTGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
* *
17161204 GCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
131 GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * ** * * *
17161269 TGAAACGAGCGGACGGGCGGGCACTACGTAAACCAGAGAGACGGGATGCGCAAGCCGTGTATTGA
196 CGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
17161334 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
261 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
*
17161399 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCT
326 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* **
17161464 ATTTTTCATGATTTTTGAAACTTTTTACGGCTCAAGATTTTTTAAAATTTTTT-GGAAGGTGTTT
391 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTT
* * *
17161528 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATACACAAAAAAATTAAGCTAA
456 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
17161593 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
521 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
17161658 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
586 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
17161723 GATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
651 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
17161788 CCCCCCCCGG-CCCCCCGATTGCCGGAACCCCAATGTTGCTGGTCAGGTTCTCCAGCGATGCTCC
716 -CCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCAACGATGCTCC
* * * * * *
17161852 GGCGATGGTGCTCCGGCGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCTAGCATGTGCTACT
780 GACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * * *
17161917 GTAACCCTCAATCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTA
845 GCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
17161969 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
* * ** * * ** * * *
17162034 CAGAGAGGTGGGATGCATAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
* ** *
17162099 GCTGCAACCCTTGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
131 GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * *
17162164 CAAAATGAATGGGCGGTCGGGCGGGCACTACACCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
196 CGAAACG-A---GCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
17162229 TCAATAGCGTGGTAGGTGAGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
257 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * **
17162294 GCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTTATT
322 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
17162359 TTCTATTTTTCACGATTTTTGAAACATTTTACGGTTCAGGAACTTTTT-AAATTTTTTCGGAAGG
387 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGGATTTTTTAAAATTTTTTCGGAAGG
* * ** * * *
17162423 AGTTTCGGATCTAAACTTGGTAGACGTGGTCCTTGTATTTTTGTTGGCATGCACCAAAAAATTCA
451 TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
17162488 GCAAAAAACTTGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
516 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
17162553 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCGA
581 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
17162618 GGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGC
646 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * * *
17162683 GCACACCGACCCCGGCCTCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGATCACCGACGAT
711 GCACACC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCAACGAT
* * * * * * *
17162748 GCTCTGGCGATGGTGCCCCGACGAAGAAAATTACAGCACCAGCACATGCCCGAGCGCGGCATGTG
775 GCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
17162813 CTGCCGGAACCCTCCGTCCGG-TCTAATCTTAGACTGGGAATGAACTCCGTATGC
840 CTGCCGCAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGC
17162867 CTAAGCTGAC
Statistics
Matches: 3120, Mismatches: 401, Indels: 93
0.86 0.11 0.03
Matches are distributed among these distances:
880 61 0.02
881 22 0.01
882 76 0.02
883 2 0.00
884 1 0.00
885 510 0.16
886 7 0.00
888 7 0.00
889 255 0.08
890 224 0.07
891 224 0.07
892 1 0.00
893 7 0.00
894 3 0.00
895 578 0.19
896 488 0.16
897 7 0.00
899 211 0.07
900 298 0.10
901 138 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
GCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCAACGATGCTCCG
ACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
Found at i:17161968 original size:26 final size:26
Alignment explanation
Indices: 17161939--17161991 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17161929 CTGGTCCAAT
17161939 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17161965 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17161991 C
1 C
17161992 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17163563 original size:26 final size:26
Alignment explanation
Indices: 17163512--17163564 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17163502 TTGGCCCGAT
* * **
17163512 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGCGAATGAACTCCATATG
17163538 CTTACACTGCGAATGAACTCCATATG
1 CTTACACTGCGAATGAACTCCATATG
17163564 C
1 C
17163565 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGCGAATGAACTCCATATG
Found at i:17164648 original size:867 final size:867
Alignment explanation
Indices: 17163144--17166193 Score: 3864
Period size: 867 Copynumber: 3.4 Consensus size: 867
17163134 TTCGGAAGGA
* *
17163144 ATTTTTTTTGGCATGCAC-AAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGCGACCA
1 ATTTTTGTTGGCATGCACAAAAAC-ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
*
17163208 TTTGAAAAAAAG-G-CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
65 TTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
17163271 AAATGCTCTTTAAGAGGGTATGAGTTCTCAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGC
129 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
17163336 CAGGTACCATCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG-CGGGAAC
194 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAAC
* * * * ** *
17163400 CCCATTGCTGCCTGTCAGGTTCTCCGGTGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCAC
258 CCCAATGCCGCCGGTCAGGTTCTTCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCAC
* * * * *
17163465 ATGCCCGAGCCCAGTATGTGCTGTCACAACCCTCAGTTTGGCCCGATCTTAGACTGGGAATGAAC
323 ATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C---TT-G--CGTTC-T-GACTCGG-AT---C
* * * *
17163530 TCTGTATGCTTACACTGCGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
374 -CT-TA-G-----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGG
* * * *
17163595 CGCTCAGCCGGCCAGAAGGGTGAGACGCGCAAGTCGGGGATCGGCTGGGTCCCCCTCTGCATGCT
431 CGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGT--GGGATCGGCTGGGTCCCCCTCTGCGTGCT
* ** *
17163660 ATCGATCCTG-CTGTCGTAACCCTCGGTCTGGTCCAACCTTAGACTGGGAATGAACTCCGTATGC
494 GTCGATCCTGCCACT-GTAACCCTCGTTC-GGTCCAACCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
17163724 CAAAGCCAACTGACAAAAAGAGTGGGTAGGCGGGCGGACGGGCACTACGTAGGCCAGAGAGATGG
557 CTAAGCCAACAGACGAAAAGAGTGGGTGGGCGGGCGGGCGGGCACTACGCAGGCCAGAGAGACGG
* *
17163789 GATGCGCAAGCCGTGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATATTCGTATTTCTATGTG
622 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTATGTG
* *
17163854 CCAATGCCATTTTTATGGCTTGTAAATTCATACAACGATCCCTTAAGCCCTCACATGAAGTTTCA
687 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCCTCACGTGAAGTTTCA
17163919 TGGCAAGAAGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
752 TGGCAAGAAGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
* *
17163984 AAATTTTTTTGAAAGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGT
817 AAATTTTTTCGGAAGGATTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGT
* *
17164036 ATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCAT
1 ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
*
17164101 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
17164166 ATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
17164231 AGTACCAGCACCCATCGCACATCATGTGCGCACATCGCCCCAGCCCCCCTGATCGTCGGAACCCC
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * * *
17164296 ATTGCTGCCGGTCAGGTTCTTCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATA
261 AATGCCGCCGGTCAGGTTCTTCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG
* *
17164361 CCCAAGCCCAGCATGTGCTACCGCAACCCTTG-GTTC-GA-TCGGAT-CTTAGACTGGGAATGAA
326 CCCGAGCCCAGCATGTGCTGCCGCAACCCTTGCGTTCTGACTCGGATCCTTAGACTGGGAATGAA
* * * *
17164422 CTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGCCACTCAGCCGGCCAGAGGGGCGGGA
391 CTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGA
**
17164487 TGCGCAAGTAGAGGATCGGCTGGGTCCCTATCTGCGTGCTGTCGATCCTGCCACTGTAACCCTCA
456 TGCGCAAGT-G-GGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCCACTGTAACCCTC-
17164552 GTTCGGTCCAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAAAGAGTGGG
518 GTTCGGTCCAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAAAGAGTGGG
* * * * * *
17164617 TGGGCGGGCGGGCGGGAACTATGCCGGCCAGAGTGACGGGATGCACAAGCCGTGGATTGATAGGG
583 TGGGCGGGCGGGCGGGCACTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * **
17164682 TGGTAGGTGGGTTTAGGCACATATTCAAATTTTTGGGTGCCAATGCCATTTTTATGGCTTGTAAA
648 TGGTAGGTGGGTTTAGGCACATATTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAA
*
17164747 TTCATACAATTATCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTT
713 TTCATACAATGATCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTT
* *
17164812 TCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTCGCC
778 TCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCC
*
17164877 CCAACTTGGTAGACGTGATCCTTGT
843 CAAACTTGGTAGACGTGATCCTTGT
*
17164902 ATTTTTGTTGGCATGCACAAAAACATTCAGCAAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
*
17164967 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* ** *
17165032 ATGCTCTTTAAGGGGGTGTGAGTTCTCAACGTTTGATGAGGGATAGGGCACAAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
17165097 AGTACCAGTACCCATCGCATATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCC
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * *
17165161 AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTAGCGATGGTGCCCCGGCGAAGAAAAATACGGC
261 AATGCCGCCGGTCAGG-T-T----C--T--TCGA-CGATGGTGCCCCGACGAAGAAAAATACGGC
* ** * *
17165226 ACCAGCACATGCCCGAGCCCTGCATGTGCTGGTGCAACCATTGATCCAGTCCGATCTTAGACTGG
315 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTG---C-GT----TC-T-GACT-C
* *
17165291 GAATGAACTCCGTATTCCTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCATAAAATGAG
369 G---G-A-TCC----T--TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG
* * *
17165356 CATGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCCTGGGATCGG-TCGGGTCCCCCT
423 CGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAG--TGGGATCGGCT-GGGTCCCCCT
* * * * * * *
17165420 CTAG-GTGCTGCCGATCCTGCTACTGCAACCCTCGATTTGAT-CAGATCTTAGATTGGGAATGAA
485 CT-GCGTGCTGTCGATCCTGCCACTGTAACCCTCG-TTCGGTCCA-ACCTTAGACTGGGAATGAA
* * * *
17165483 CTCCGTATGCCTAAGCCAACCGACGAAACGA----GTGGGCGGGCGGGCAGGCACTACGCTGGCC
547 CTCCGTATGCCTAAGCCAACAGACGAAAAGAGTGGGTGGGCGGGCGGGCGGGCACTACGCAGGCC
* **
17165544 AGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAGCCTTCAT
612 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA-TATTCAT
* * *
17165609 ATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAATGGTCCTTTAAGCCTTCA
676 ATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC-AATGATCCCTTAAGCCCTCA
* * * *
17165674 CGTGAAGTTTCTTGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
740 CGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTT
* * *
17165739 -GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCAAAAACTTGGTAGACGTGATCCTTGT
805 CGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCC-CAAACTTGGTAGACGTGATCCTTGT
* * * * ** *
17165802 ATTTTTGTCGGCATGCATAAAAAAATTAAGCTAAAAACTTGAAGTGTACAAGATTTTCTGACCAT
1 ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
*
17165867 TTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
17165932 ATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
17165997 AGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCGG-CCCCCCGATCGTCGGAACCC
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCGATCGTCGGAACCC
**
17166061 CAATGCCGCCGGTCAGGTTCTTCGATGATGCTCCAACGATGGTGCCCCGA-GAAGAAAAATGTGG
260 CAATGCCGCCGGTCAGGTTCTTC------G-----ACGATGGTGCCCCGACGAAGAAAAATACGG
* * * * *
17166125 CACCAGCACATTCTCGA-CCCAGCATGTGCTGCCGCAACCGTTG-G-TCT-AGTCTGAT-CTTAG
314 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGCGTTCTGACTCGGATCCTTAG
17166185 ACTGGGAAT
379 ACTGGGAAT
17166194 ATAAGGGCCA
Statistics
Matches: 1908, Mismatches: 184, Indels: 151
0.85 0.08 0.07
Matches are distributed among these distances:
865 40 0.02
866 242 0.13
867 415 0.22
868 5 0.00
871 1 0.00
872 1 0.00
873 15 0.01
874 2 0.00
875 4 0.00
876 64 0.03
879 3 0.00
880 4 0.00
881 5 0.00
882 1 0.00
884 3 0.00
885 2 0.00
886 2 0.00
887 1 0.00
888 5 0.00
889 3 0.00
890 1 0.00
891 10 0.01
892 63 0.03
893 254 0.13
894 3 0.00
895 2 0.00
896 1 0.00
898 79 0.04
899 102 0.05
900 338 0.18
901 54 0.03
902 180 0.09
903 2 0.00
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (867 bp):
ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCC
AATGCCGCCGGTCAGGTTCTTCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGCAACCCTTGCGTTCTGACTCGGATCCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGA
TGCGCAAGTGGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCCACTGTAACCCTCGTT
CGGTCCAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAAAGAGTGGGTGG
GCGGGCGGGCGGGCACTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATATTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGATCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCA
TAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCAA
ACTTGGTAGACGTGATCCTTGT
Found at i:17167328 original size:26 final size:26
Alignment explanation
Indices: 17167278--17167330 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17167268 CCGGTTCGAT
*
17167278 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAATCTCGTATG
17167304 CTTAGACTGGGAATGAA-CTCTGTATG
1 CTTAGACTGGGAATGAATCTC-GTATG
17167330 C
1 C
17167331 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATCTCGTATG
Found at i:17168293 original size:898 final size:898
Alignment explanation
Indices: 17166191--17168300 Score: 2817
Period size: 898 Copynumber: 2.4 Consensus size: 898
17166181 TTAGACTGGG
* * *
17166191 AATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCTAGCCCCCTCG
1 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGA-CCCCCCCG
** * * * *
17166255 ATCACCGGAACCAC-AATGTCGTCGGTCAGGTTCTCC-G--ATGAT--G-C--TGG---CCCGAC
65 ATCGTCGGAACC-CTAATGCCGCCGATCAGGTTCTCCGGCAATGCTCCGACGATGGTACCCCGAC
* * * **** * * ** * *
17166308 GATGAAAAATGCGGCACCAGCACATGTGTGA-CCACAGCATGTGCTACCGGAACCCTCGGTCTGG
129 GAAGAAAAATGCGACACCAGCACAAGCCCAAGCC-CAACATGTGCTGCCACAACCCTCGGTCCGA
* ** *
17166372 TCTGATCTTAGATTGGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
193 TCCGATCTTAGACGGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
17166437 CAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGACGGGATGCGCAAGCCGGGGAT
258 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT
** * *** *
17166502 CGGTCCAGCCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTTTGGTTCGATCTTA
323 CACTCCAGCCCCCCTCTGCGTACTGCCGATCCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTA
* *
17166567 GACTGGGAATGAACTCCGTATGCCTAAACCAACCGATGAAACGAGCGGACGGGCGGGCGAGCACT
388 GACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGCGGACGGACGGGCGAGCACT
* * * * *
17166632 ACGTCTGCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTGGGTGGGTTTTGGCAT
453 ACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
17166697 ATCTTCATATTAATGCATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAA
518 ATCTTCATATTAATACATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAA
* * **
17166762 GCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTT
583 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
* * * *
17166827 TGCAGTTCGAGGTTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATTAT
648 TACAGTTCGAGATTTTTTAAAATATTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
* *
17166892 CCTTGTATTTTTGTTCGCATGCACAAAAAACTTCAGCCAAAAACTCAAAGTGTGCAAGATTTTGT
713 CCTTGTATTTTTGTTCGCATGCACAAAAAACATCAGCCAAAAACTCAAAGTGTACAAGATTTTGT
** *
17166957 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGGAAACCTGTAAAA
778 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAACAAACCTATAAAA
*
17167022 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
843 TCTCAAA-GCTCATTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * * *
17167080 AATATAAGGGCCAAGTACCAGCAGCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGA
1 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGA
* * ** *
17167145 TCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCTATGCTCCGGTGATGGTGCCCCGACGA
66 TCGTCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGCAATGCTCCGACGATGGTACCCCGACGA
* * * * * * * * *
17167210 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAGCCGTCGGTCCGGTTC
131 AGAAAAATGCGACACCAGCACAAGCCCAAGCCCAACATGTGCTGCCACAACCCTCGGTCCGATCC
* * * *
17167275 GATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
196 GATCTTAGACGGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
17167340 CCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGACGGGCGGGATGCGCAAGCCGAGGATCAA
261 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-A
* * * * * * *
17167405 CT-GAGTCTCCCTCTGTGTACTGCTGATCTTGCTACCGTAACCCTCAGTCCAGTCCGATCTTAGA
325 CTCCAGCCCCCCTCTGCGTACTGCCGATCCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGA
* * *
17167469 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGTCGGGCGGACGGGCGGGCA
390 CTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGA---G-CGGACGGACGGGCGAGCA
* *
17167534 CTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
451 CTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
** *
17167599 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
516 ACATCTTCATATTAATACATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTT
17167664 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
581 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* * *
17167729 TTTACGGTTCGAGATTTTTTAAAAT-TTTCTCGAAAGTAG-TTTGTGCCCCAAACTTGGTAGACG
646 TTTACAGTTCGAGATTTTTTAAAATATTT-TCGAAAGGAGTTTTG-GCCCCAAACTTGGTAGACA
* * **
17167792 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATCAGCTAAAAACTTGAAGTGTACAAGATT
709 TGATCCTTGTATTTTTGTTCGCATGCACAAAAAACATCAGCCAAAAACTCAAAGTGTACAAGATT
* *
17167856 TTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTAT
774 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAACAAACCTAT
** *
17167921 AAAATCTC-AA-CTCATTAA-GGGTGTGAGTTCTTGAGTTTTGATGAGGGATAGGGGGCC
839 AAAATCTCAAAGCTCATTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* *
17167978 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGACCCCCCCGT
1 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGA
*
17168043 TCGTCGGAATCCC-AATGCCGCCGATCAGGTTCTCCGGCAATGCTCCGACGATGGTACCCCGATG
66 TCGTCGGAA-CCCTAATGCCGCCGATCAGGTTCTCCGGCAATGCTCCGACGATGGTACCCCGACG
* * ** * *
17168107 AAGAAAAATGCGACACCAGGACAAGCCCAAGCCCAACATGTGCTGTCGTAACCCTTGGTCTGATC
130 AAGAAAAATGCGACACCAGCACAAGCCCAAGCCCAACATGTGCTGCCACAACCCTCGGTCCGATC
*
17168172 CGATAC-TAGACGGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTC
195 CGAT-CTTAGACGGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
17168236 AACCCACGAAACGAGTGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGTGCAAGCCGACGATC
259 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC
17168301 GACCGGGTCC
Statistics
Matches: 1067, Mismatches: 131, Indels: 37
0.86 0.11 0.03
Matches are distributed among these distances:
888 1 0.00
889 80 0.07
890 7 0.01
892 4 0.00
894 1 0.00
897 3 0.00
898 315 0.30
899 4 0.00
900 271 0.25
901 3 0.00
902 2 0.00
903 101 0.09
904 275 0.26
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (898 bp):
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGA
TCGTCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGCAATGCTCCGACGATGGTACCCCGACGA
AGAAAAATGCGACACCAGCACAAGCCCAAGCCCAACATGTGCTGCCACAACCCTCGGTCCGATCC
GATCTTAGACGGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAC
TCCAGCCCCCCTCTGCGTACTGCCGATCCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGCGGACGGACGGGCGAGCACTACG
TCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTAATACATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
AGTTCGAGATTTTTTAAAATATTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
TGTATTTTTGTTCGCATGCACAAAAAACATCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAACAAACCTATAAAATCT
CAAAGCTCATTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
Found at i:17168501 original size:26 final size:26
Alignment explanation
Indices: 17168472--17168524 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17168462 CTGGTCCGAT
*
17168472 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17168498 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17168524 C
1 C
17168525 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:17170255 original size:26 final size:26
Alignment explanation
Indices: 17170219--17170271 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17170209 CTGGTCTGAT
17170219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17170245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17170271 C
1 C
17170272 GTAAGTTCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17171900 original size:26 final size:26
Alignment explanation
Indices: 17171871--17171923 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17171861 CTGGTCCGAT
* * *
17171871 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17171897 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17171923 C
1 C
17171924 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17172802 original size:26 final size:26
Alignment explanation
Indices: 17172773--17172825 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17172763 CCGGTCCGAT
17172773 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17172799 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17172825 C
1 C
17172826 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17173710 original size:26 final size:26
Alignment explanation
Indices: 17173674--17173726 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17173664 CTGCTCTGAT
* *
17173674 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
17173700 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
17173726 C
1 C
17173727 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:17174618 original size:26 final size:25
Alignment explanation
Indices: 17174568--17174619 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
17174558 CCGGTCCGAT
*
17174568 CTTAACTGGGAATGAACTCCGTATG
1 CTTAACTGGGAATGAACTCCATATG
*
17174593 CTTAGACTGGGAATGAACTCTATATG
1 CTTA-ACTGGGAATGAACTCCATATG
17174619 C
1 C
17174620 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAACTGGGAATGAACTCCATATG
Found at i:17175043 original size:889 final size:886
Alignment explanation
Indices: 17170279--17177312 Score: 7933
Period size: 889 Copynumber: 7.9 Consensus size: 886
17170269 TGCGTAAGTT
* ** *
17170279 CGATCTTAGATTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC-GG
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGG
* *
17170343 -G-CGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
65 CGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * * *
17170406 GGTTTAGTCACATCTTCATATTTCTACGTGCTAATGCCATTTTTATGGCTTGTATATTCATACAA
130 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
17170471 TGGTCCCTTAAGCCTTCAAGTGAATTTTCATGGCAAGACGACTCATTTTCTATTTGTCACGATTT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * * *
17170536 TCAAAACTTTTTGCGGTTCGGGATTTTGTAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
260 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * *
17170601 GTAGACGTGATCCTTGTATTCTTGTTAGCATGCACAAAAACATTTAGCTAAAAACTCGAACTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
17170666 CAAGATTTTG-GCCACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAG
390 CAAGATTTTGTG--ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
17170730 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAA
453 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAA
* * * * * * * ** * * ** * * **
17170795 GGGGCAAATA-TA--A---GT-GC-CA--A-GTAC-CAGA--ACCCATCACACATATGTGAGCAC
518 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT-CG-CCGG
** * * * *
17170846 ACACCCCAATGCCGCTGGTCAGGTTCTCCGGTGATGCCCCGACGATGGTGGCCC-AGTGAAGAAA
581 A-ACCCCAATGCCGC-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAA
* * * * * * * *
17170910 AATGTGGCACTAGCACATGCTCGAGCCCAGCATGTGTTGCCGTAACCCTCAGTCCGATCTGATCT
643 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCT
* * *
17170975 TAGACTTGGATTGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
708 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * ** * * *
17171040 GAAATGAGAGTGTGGGCGCTCAACTTGGTAGACGTGAGGGGTGGGTTGCGTAAGCCGGGGATCGA
773 GAAACGAGCGTGCGGGCGCTCAGC--CG--G-CCAGAGGGGTGGGATGCGCAAGCCGGGGATCGG
* * * * * *
17171105 TCGGGTCCCCCTCAACGTGCTACCAATCCTACTGCCACAACCCTCGGTCTGGTC
833 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCTGTCTGGTC
* * *
17171159 CAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGC--G
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGG
* * * * *
17171222 TG-CGGGCACTACGTCGGCCAGAAAGATGGGATGCGCAAGCCGTGGATCTATAGGGTGGTAGGTG
65 CGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
17171286 GGTTTAGGCACATCTTTATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGCAAATCCATACAA
130 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
17171351 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC-AGACGACTCGTTTTTCTATTTTTCACGA-T
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATT
*
17171414 TTTCAAACTTTTTTACGGTTCGAGA-TTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAAAC
259 TTTGAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAAC
* * * **
17171477 TTAGTAGGACGTGATCCCTTGGTATATTGTGTTGGCCTGCACAAAAAAACGCAGCTAAAAAACTC
322 TTGGTA-GACGTGAT-CCTT-GTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTC
* * *
17171542 GAAGTGTTACCAGATTTTG-GCCATCATTTG-AAAAAGTGTCCCCATTTCAAACCACTTTAAATG
382 GAAGTG-TACAAGATTTTGTG--ACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTT-AATG
* * *
17171605 GCTACTGGCAGCACAACTTGGTAAAATCTCAAATGCTCTTTGAGGGGGGTGTGAGTTCTCAAGGT
442 GCTACTGGCAGCA-AACCT-GTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGG-
* * *
17171670 TTTGATGAGGGATAAGGGGCAATATAAGGGCCAAGTACCACCCCATTGCACATCATGTGCGCACA
503 TTTGATGAGGGATAAGGGCCAA-GT-A---CC-AG---CA-CCCATCGCACATCATGTGCGCACA
* * *
17171735 CCCCTCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGATCAGG---T-------T-CT-C--
558 CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGG
* * * *
17171786 CGATGGTG-CCCTAGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCAAGCATGTGCTACCG
621 CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * *
17171850 CAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATAAAC
685 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * * *
17171915 TCCGTATGCCTAAGTCAACACATGAAACGTGCGTGCCGACGCTCAGCTGGCCAGAGGGGCGGGAT
750 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGAT
* * * ** * * * * *
17171980 GCGCGAGTCGAGGATCGACCGGGTCCCACTTTGCGTGCTACCGATCCTGCTACCATAACCCT-TG
815 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCT-
*
17172044 GTCTGATC
879 GTCTGGTC
* * * * * *
17172052 TGATCTTAGACTAGGAATGAACTCCGTTTGGCTAAGCCAACCGATGAAACGAGCAGGCGTGCGGG
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGG
* * * * * *
17172117 CGGGCAGGCACTATGCC-GTCAGAGAGACGGGATGTGCAAGCCGTGGATCAATAGGGTGGTAGGT
65 C-GACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
17172181 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
129 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
17172246 ATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATT
194 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * *
17172311 TTTGAAACTTTTTGTGGTTCGAGATTTTTAAAAATTTTTTCGGAAGGCGTTTTGCCCCCAAACTT
259 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
17172376 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAAATCAAAGTGT
324 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
17172441 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGC
389 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
17172506 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTTATGAGGGATAGC
454 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG--TT-T----GAT-GA
* * *
17172571 GGGCCAATATTAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGCCACC
511 GGG---ATA--AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CC
* * * * *
17172636 CCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCT-CTAGGGATGCTCCGACGATGGTGCCCC
570 CCGATCGCCGGAACCCCAATGCC-GCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCC
* * *
17172700 -AGCGAAGAAAAATGCGGCACCAGCACATACTCGAGCCCAGCATGTACTGCCAG-AACCCTCGGT
633 GA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-GTAACCCTCGGT
*
17172763 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
696 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * **
17172828 AAGTCAACCAACGAAACGAACGTGCGGGTTCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGG
761 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGG
* * * * * *
17172893 GGATCGGTCGGGTCCGCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTC
826 GGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCTGTCTGGTC
* * * ** * *
17172954 TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACTTACAAAACGAGCGGGCGGGTGGG
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGG
* ** * * * * * *
17173019 CGGGCGGGCACTACATCGGCCAGAAAGACGAGATGCGCAAGTCGTGGATCGATTGAGCGGTAGGT
65 C-GACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
17173084 GCGTTTAGGCACATCTTCATATTTCTGCATGCCACTACCATTTTTATGGCTTGTAAATTCATACA
129 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
17173149 ATGGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATT
194 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * *
17173214 TTTGAAACTTTTTGCGGTTCAAGATTTTTAAAAATTTTTTCGGAAGG-CTTTTTGCCCCAAAACT
259 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACT
* * *
17173278 TGGTAGAACGTGAATCCTTGTATTTTTTTTTGGCATGCAC-AAAAATTTCAGCTAAAAA-TCAAA
323 TGGTAG-ACGTG-ATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
17173341 GTGTAGCAAGATTTTTGTGACCATTTGAAAAAAGTGT-CCCATTTTCAGACACTTTAATGGCTAC
385 GTGTA-CAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTAC
*
17173405 TGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGTGA-TTCTCGAGGTTTCGATG
447 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGAGGTTT-GATG
* * *
17173469 AGGGGATAAGGGGGCAAATATAAGTGCCAGTATCAGAACCCATCACACAT-ATGTGCGGCACAAC
510 A-GGGATAA--GGGC-----CAAGTACCAG---C---ACCCATCGCACATCATGTGC-GCAC-AC
* *
17173533 CCCTCGG---CCCGATCG-C-GAACCCCAATG-CGCCGGTCAGGTTCTTCG-CGATGCTCCTGGC
559 CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCC-GGC
* * * * *
17173591 GATGGTG-CCTGGC-AAGAAAAATACCGGCACTAGCACATGCCCGAGGCCAGCATGTGCTGCC-T
622 GATGGTGCCCCGACGAAGAAAAAT-GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
* * * *
17173653 CAACCCTCGATCTGCTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
686 -AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * ***
17173718 CCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGTGGGCGCTCAGTCGGCCAGAGGGGCATGAT
750 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGAT
* * * ** * *
17173783 GCACAAGCCGGGGATCCGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCTACAACCCT-TA
815 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCT-
17173847 GTCTGGTC
879 GTCTGGTC
* * * *
17173855 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAGGAAACGAGCAAGCAGGCGGA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G--AGC-GGCGGG
* *
17173920 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGCTAGGGTGGT
61 CGGGC-GACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * * * *
17173985 AGGTTGGTTTAGGGATATCTTCATATTTTTGCATGCCAATGCCATTTTTGTGGCCTGTAAATTCA
125 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
17174050 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCAT
190 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
17174115 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCACAA
255 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
*
17174180 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
320 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
17174245 GTGTACAAGATTTTGTGACCATGTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGG
385 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
17174310 CAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGA
450 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
17174375 TAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCACC
515 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGCC
* * *
17174440 GGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCTGATGAAGAAA
579 GGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* ** * *
17174505 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTGGTAACCCTCAGTCCGGTCCGATCT
643 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCT
**
17174570 TA-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCAC
708 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* ** * * * *
17174634 GAAACGAGCGTGTGGGCGCTCAATCTGCCAGAGGCGTGGGATGCGCAAGCCGGGGATTGGCCGGG
773 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGG
* * * * * * *
17174699 TCCCCCTCTACATGCTGCTGATCTTGCTATCGCAACCCTCTATCCGGTC
838 TCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCTGTCTGGTC
* * *
17174748 CGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGTGCGGGCGGG
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGG
* * * * *
17174813 CCGACGGGCATTATGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGTATCGATAGAGTGGTAGGT
65 -CGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
17174878 GGGTTTAGGCACATCTTCATATTTTTGCATCCCAATGCCATTTTTATGACTTGTAAATTCATACA
129 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
17174943 GTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATT
194 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * ** *
17175008 TTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCTACATACTT
259 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
17175073 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGT
324 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * *
17175138 ACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGT
389 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
17175203 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGG
454 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT----G--A-G
* *
17175268 GGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTTG-GCACACCCCCCCGACCCC
512 GG-----ATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-TGCGCACA-CCCCCCG-GCCC
* ** * * ** * * *
17175332 CCCGATCGTCGGAACCTTATTACCGTCGGTCAGGTTCTTTGACGAAGCTCCAGTGATGGTGCCCC
569 CCCGATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * ** * * *
17175397 GGCAAAGAAAAATATGGCCCCAGCACATGCCCAAGCCCAGCATGTGC-GACCGCAACCCTCGGTC
633 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CCGTAACCCTCGGTC
* * * * *
17175461 TGCTCTGATCTTAGAATGGGAATGAACTCTGTACGCTTAGACTGGGAATGAACTCCGTATGCCTA
697 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
17175526 AGTCAACCCATGAAACGACCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGGG
762 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGG
* ** * * * *
17175591 GATCGATCGGGTCCCCAACTACGCGCTACCGATCCTGCTACCACAA-CCTTTGGTCCGGTC
827 GATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCT-GTCTGGTC
* * *
17175651 TGATCTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACCGACGAAACGA-------GC-GG-
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGC
* * * *
17175707 G-CGGGCACTACGCCAGCCAGAGAGACGGGATGTGCAAGCCATCGATCGATAGGGTGGTAGGTGG
66 GACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
17175771 GTTTAGGCCCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
17175836 GGTCCCTTAAGCGTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* *
17175901 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTGGACCCAAACTTG
261 TGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * *
17175965 GTAGACATGATCATTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCTAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
17176030 CAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCA
390 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
17176095 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA---
* * * **
17176160 GGCCAGTATAATGGCCAAGTTCCAGCACCCATCACACATCATGTGCACACACCCGCCCCGGTTCC
517 ----AG------GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCC
* * * * *
17176225 CCGATCGCTGGAACCACAATGCCGCATGTCAGGTTCTCCGACGATGCTCCGGTGATCGTGCCCCG
570 CCGATCGCCGGAACCCCAATGCCGC-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * * * **
17176290 ACGAAGAGAAATACAGTACCAGCACATGCCCGAGCCCAGCATGTGCTGCTTTAACCCTCGGTCTG
634 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTG
* * * ** *
17176355 ATCTGATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTATGTATGCGTAAG
699 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
17176420 TCAATCCACGAAACGAACGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGA
764 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGA
* * *
17176485 TCGGTCGAGTCCCCCTCCACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTC
829 TCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCTGTCTGGTC
* * * *
17176543 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGATGGGCGGG
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGG
* * * *
17176608 C-A--GGCACTACGACGGCTAGAGAGACGGGATGTGCAAGCTGTGGATCGATAGGGTGGTAGGTG
65 CGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
17176670 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAG
130 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
17176735 TGGTCCCTTAAGCCATCATGTGAAGTTTCATGACAAGATGACTCGTTTTCTATTTTTCACAATTT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * ** *
17176800 TCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCATAAGCTTG
260 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
17176865 GTAGACGTGATCCTTGTGTTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
17176930 CAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTAGCAGCA
390 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
17176995 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT----G--A--G
* * * *
17177060 GGCCAATATAAGGGCCAAGTACTAGCACCAATCGCACATCATGCGCGCACACCTCCCTGGCCCCC
512 GG-----ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGG-CCCC
* * ** ** *
17177125 CCGATCGTCAGAACCGTAAAACCGTCGGTCAAGTTC-CCTGAC---G-T-------TGGTGCCCC
570 CCGATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCC-GACGATGCTCCGGCGATGGTGCCCC
* * * *
17177178 GACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGGAACCCTCGGTCT
633 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCT
* * * * *
17177243 GGTCCAATCCTAGACTTGGAATGAACTCCGTATGCTTAGA-TCAGGAATGAACTCCATATGCCTA
698 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTA
17177307 AGTCAA
762 AGTCAA
17177313 TATAAGGGGG
Statistics
Matches: 5289, Mismatches: 655, Indels: 411
0.83 0.10 0.06
Matches are distributed among these distances:
878 24 0.00
879 38 0.01
880 241 0.05
881 4 0.00
882 4 0.00
883 22 0.00
884 35 0.01
885 28 0.01
886 46 0.01
887 47 0.01
888 91 0.02
889 579 0.11
890 42 0.01
891 436 0.08
892 383 0.07
893 386 0.07
894 74 0.01
895 19 0.00
896 185 0.03
897 56 0.01
898 179 0.03
899 19 0.00
900 484 0.09
901 315 0.06
902 568 0.11
903 466 0.09
904 32 0.01
905 283 0.05
906 126 0.02
907 11 0.00
908 20 0.00
909 8 0.00
910 1 0.00
911 3 0.00
912 21 0.00
913 6 0.00
914 2 0.00
915 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGC
GACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCC
CAATGCCGCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
TACGTGCTGCCGATCCTGCTACCACAACCCTCTGTCTGGTC
Found at i:17177439 original size:11 final size:11
Alignment explanation
Indices: 17177423--17177452 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
17177413 TCAGGTTCTC
17177423 CAGCGATGCTT
1 CAGCGATGCTT
17177434 CAGCGATGCTT
1 CAGCGATGCTT
17177445 CAGCGATG
1 CAGCGATG
17177453 GTGCCTCGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (11 bp):
CAGCGATGCTT
Found at i:17179407 original size:26 final size:26
Alignment explanation
Indices: 17179371--17179423 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17179361 CTGATCTGAT
17179371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17179397 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17179423 C
1 C
17179424 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17180891 original size:26 final size:26
Alignment explanation
Indices: 17180854--17180913 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
17180844 CCTCGGTCCG
17180854 GTCCG-AT-CTTAGACTGGGAATGAA
1 GTCCGTATGCTTAGACTGGGAATGAA
17180878 GTCCGTATGCTTAGACTGGGAATGAA
1 GTCCGTATGCTTAGACTGGGAATGAA
*
17180904 CTCCGTATGC
1 GTCCGTATGC
17180914 CTCAGTCAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 26 0.79
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
GTCCGTATGCTTAGACTGGGAATGAA
Found at i:17181623 original size:903 final size:902
Alignment explanation
Indices: 17179725--17181681 Score: 2794
Period size: 903 Copynumber: 2.2 Consensus size: 902
17179715 GCCCGGGGGA
* * *
17179725 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTTCCAGCACCCATCA
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCA
** * **
17179790 CACATCATGTGCACACACCCGCCCGGTTCCCCCGA-TCACTGGAACCACAATGCCGCATGTCAGG
66 CACATCATGTGCACACACCC-CCCGGCCCCCCCGATTAAC-GGAACCACAATG-CGCCGGTCAGG
**
17179854 TTCTCCGGCGATGCTCCGGTGATCGTGCCCCGACGAAGAGAAATACAGCACCAGCACATGCCCGA
128 TTCTCCGGCGATGCTCCGACGATCGTGCCCCGACGAAGAGAAATACAGCACCAGCACATGCCCGA
** * * * *
17179919 GCCCAGCATGTGCTGCTTTAACCCTCGGTCTGATCTGATCTCGGACTGGGATTGAACTCCGTATG
193 GCCCAGCATGTGCTGCTGCAACCCTCGGTCCGATCCGATCTCAGACTGGGAATGAACTCCGTATG
* * *
17179984 CTTAGACTAGAAATGAACTCCGTATGCCTTAGTCAACCCATGAAACGAGCGTGTGGGCACTCAAC
258 CTTAGACTAGAAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * *
17180049 CGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGTTCCCCCTCTGTGTGCTACCGATCT
323 CGACCAGAGGGGCAGGATGCGCAAGCCGGCGATCGACCGGTTCCCCCTCTATGTGCTACCGATCC
* * * *
17180114 TGCTGCCGCAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
388 TACTGCCACAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAA
*
17180179 CCGACAAAACGAGCGAGCGGGCGGGCGGGCGGGAACTATGCCAGCCAAAGAGACGGGATGCGCAA
453 CCGACAAAACGAGCGAGCGGGCGGGCGGGCGGAAACTATGCCAGCCAAAGAGACGGGATGCGCAA
** *
17180244 GTTGTGGATCGATAGGGTGGCAGGTGTGTTTAGGCACATCTTCATATTTCTGCACGCCAATGCCA
518 GCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCACGCCAATGCCA
17180309 TTTTTATGGCTTGTAAATGCATACAATAGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGAC
583 TTTTTATGGCTTGTAAATGCATACAATAGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGAC
* * *
17180374 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTCAAAATTTTTT
648 GACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTCAAAATTTTTT
*
17180439 CGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
713 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
17180504 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
778 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
* * **
17180569 AGACACTTTAATGGCTACTGGCAGCAAACCTTTTAAATCTCAAATGCTCTTTAAGGGGGT
843 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAAGGGT
* * *
17180629 GTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCTATATAAGGGCCAAGTACCAGCACCCATCA
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCA
* * * ** ** *
17180694 CACATCATTTACGCACACCCCCCGGCCCCCCCGATTGTCGGAACTTCAATGTCGCCGGTCAAGTT
66 CACATCATGTGCACACACCCCCCGGCCCCCCCGATTAACGGAACCACAATG-CGCCGGTCAGGTT
* * * ** * * * *
17180759 CTCTGACGATGCTCCGACGATGGTGCCCCGGGGAATATAAATGCGGCACCAGCACATGCCCGAGC
130 CTCCGGCGATGCTCCGACGATCGTGCCCCGACGAAGAGAAATACAGCACCAGCACATGCCCGAGC
* * *
17180824 CCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAGTCCGTATGCT
195 CCAGCATGTGCTGCTGCAACCCTCGGTCCGATCCGATCTCAGACTGGGAATGAACTCCGTATGCT
* * *
17180889 TAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
260 TAGACTAGAAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCG
*** * ** *
17180954 GTTAGAGGGGCGGGATGCGCAAGCCGGCGATCGGTCGAG-TCCCCCTCTATGTGCTGCCGATCCT
325 ACCAGAGGGGCAGGATGCGCAAGCCGGCGATCGACCG-GTTCCCCCTCTATGTGCTACCGATCCT
* * * *
17181018 ACTGCCATAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAAC
389 ACTGCCACAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAAC
** * * * * * *
17181083 CGATGAAATGTGCGGGTGGGCGGGCGGGCGGAAACT-TCGCCGGCCAGAGAGACGGGATGCGCAA
454 CGACAAAACGAGCGAGCGGGCGGGCGGGCGGAAACTAT-GCCAGCCAAAGAGACGGGATGCGCAA
* * *
17181147 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
518 GCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCACGCCAATGCCA
* * * *
17181212 TTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
583 TTTTTATGGCTTGTAAATGCATACAATAGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGAC
* * *
17181277 GACTCATTTTCTATTTTTCACGATATTT-GAAACTTTTTACGGTTC-GGCATTTTTTAAAATTTT
648 GACTCATTTTCTATTTTTCACGAT-TTTCAAAACTTTTTACGGTTCAAG-ATTTTTCAAAATTTT
*
17181340 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-A
711 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
17181404 AAAAATTCAG-TGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
776 AAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCAT
* *
17181468 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAAAGGGT
840 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAAGGGT
* * * *
17181531 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACTAGCACCCACCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCA
* * * * * * *
17181596 TACATTATGTGCTCACACCCACCCGGCCCCCCCGATCACCTGAACCCCAATGCTGCCGGTCAGGT
66 CACATCATGTGCACACACCC-CCCGGCCCCCCCGATTAACGGAACCACAATGC-GCCGGTCAGGT
17181661 TCTCCGGCGATGCTCCGACGA
129 TCTCCGGCGATGCTCCGACGA
17181682 AGAAAAATGC
Statistics
Matches: 928, Mismatches: 117, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
901 1 0.00
902 195 0.21
903 649 0.70
904 83 0.09
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (902 bp):
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCA
CACATCATGTGCACACACCCCCCGGCCCCCCCGATTAACGGAACCACAATGCGCCGGTCAGGTTC
TCCGGCGATGCTCCGACGATCGTGCCCCGACGAAGAGAAATACAGCACCAGCACATGCCCGAGCC
CAGCATGTGCTGCTGCAACCCTCGGTCCGATCCGATCTCAGACTGGGAATGAACTCCGTATGCTT
AGACTAGAAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGA
CCAGAGGGGCAGGATGCGCAAGCCGGCGATCGACCGGTTCCCCCTCTATGTGCTACCGATCCTAC
TGCCACAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCG
ACAAAACGAGCGAGCGGGCGGGCGGGCGGAAACTATGCCAGCCAAAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCACGCCAATGCCATTT
TTATGGCTTGTAAATGCATACAATAGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGAC
TCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTCAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAAGGGT
Found at i:17182495 original size:26 final size:26
Alignment explanation
Indices: 17182465--17182517 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17182455 CCGTTCCGAT
17182465 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17182491 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17182517 C
1 C
17182518 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17184194 original size:710 final size:709
Alignment explanation
Indices: 17182670--17184770 Score: 3064
Period size: 710 Copynumber: 2.9 Consensus size: 709
17182660 GAATTAAGTC
* * *
17182670 CGTATGCCTAAGCCAACCAATGAAACGAGTGGGTAGGTGGGCGGGCACTAGGCCAGCCAGAGAGA
1 CGTATGCCTAAGCCAACCGATGAAACGAGT--G--GGCGGGCGGGCACTACGCCAGCCAGAGAGA
17182735 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
62 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
17182800 ATGCCAATGCCATTTTTATGGCTTATAAATTCATACGATGGTCCCTTAAGCCTTCACGTGAAGTT
127 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
** * *
17182865 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTT
192 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTACAGTTCGGGATTTT
* * *
17182930 TTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTG
257 TTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * *
17182995 GCATGCACAAAACAATTGAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAG
322 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
17183060 TGTCCCCATTTCAGACACTTTGATGGCTACTGATAGCAAACTTGTAAAATCTCAAATGCTCTTTA
387 TGTCCCCATTTCAGACACTTTAATGGCTACTG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
17183125 AAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
451 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* *
17183190 CCCATCGCACAACATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAATCCCAATGTCACCG
516 CCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCGTCGGAATCCCAATGT-ACCG
* *
17183254 GTCAGGTTCTCC-AGCGATGCTCTGACGATGGTGCCCCGATGAAGAAAAAT-ATGGCACCAGCAC
580 GTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGA-GGCACCAGCAC
* * *
17183317 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTTCGTCCGATCCAATCTTAGACTGGAAATGAAC
643 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTTCGTCAGATCCAATCTAACACTGGAAATGAAC
17183382 TT
708 TT
* * * * * * * *
17183384 CGTATTCCTAAGCCAACCGACGAAATGAGCGTGCAGGCGGGCACTACGTCGGCCAGAGAGACGGG
1 CGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGG
* * * *
17183449 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGTACATCTCCATATTTATGCATGC
66 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
17183514 CAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCAT
131 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
17183579 GGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCAATTCGGGATTTTTTAA
196 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTACAGTTCGGGATTTTTTAA
* * * **
17183644 AATTTTTTTGGAAAGATTTTTGGCCCCAAACCTGGTAGACAAGATCCTTCCATTTTTGTTGGCAT
261 AATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
* *
17183709 GCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTC
326 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
17183774 CCCATTTCAGACACTTTAATGGCTACTCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
391 CCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
17183839 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCA
455 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* **
17183904 TCGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCATCGGAATCCCAATGATGTCGGTCA
520 TCGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCGTCGGAATCCCAATG-TACCGGTCA
* * * *
17183969 GGTTCCCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAAATGCTC
584 GGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCC
* * * * * *
17184034 GAGCCCAGCATGTGCTACCGCAACC-TTCGGTTTAG-TTCGATCTAACACTGGGAATGTACTT
649 GAGCCCAGCATGTGCTGCCGCAACCTTTC-G-TCAGATCCAATCTAACACTGGAAATGAACTT
* * *
17184095 CGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCACTACGCCTGCCAAAGAGACAGG
1 CGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGG
* * * *
17184160 ATGCGCAAGCCGTGGATCGATA-TGTAGCAGGTGGGTTTAGGCACATCTTCATTTTTCTGCATGC
66 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
17184224 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTGCAT
131 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
*
17184289 GGCAAGACGACTCGTTTTCTATTTTTCCCGATTTTAAAAACTTTTTACAGTTCGGGATTTTTTAA
196 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTACAGTTCGGGATTTTTTAA
* * *
17184354 AATTTTTTTGGAAGGAGTTTTGACCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGGAT
261 AATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
* * * *
17184419 GTAAAAAAAAAATCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
326 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * * * *
17184484 CCCATTCCAAACGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCCCTTTAAGGA
391 CCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * * *
17184549 GGTGTGGGTTCTCGAGGTTTGATGCGGGATAGGGGGCCAATATAAGGGACAAGTACCAACACCCA
455 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * * *
17184614 TCACACATTATGTGCGTACACCCCCCTGTCAGGCCCCCCGATCGTCGGAA-CCCAATGCCACCTG
520 TCGCACATCATGTGCGCACACCCCCCCG-C--CCCCCCCGATCGTCGGAATCCCAATG-TACCGG
** *
17184678 TCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGACGAAAAATGAGGCACCAGCACATG
581 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATG
*
17184743 CCCGAGCCCAGCATGTGCTGTCGCAACC
646 CCCGAGCCCAGCATGTGCTGCCGCAACC
17184771 CTCAGTCTGG
Statistics
Matches: 1239, Mismatches: 138, Indels: 22
0.89 0.10 0.02
Matches are distributed among these distances:
710 882 0.71
711 218 0.18
712 98 0.08
713 16 0.01
714 25 0.02
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (709 bp):
CGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGG
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTACAGTTCGGGATTTTTTAA
AATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
CCCATTTCAGACACTTTAATGGCTACTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCGTCGGAATCCCAATGTACCGGTCAGG
TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCGCAACCTTTCGTCAGATCCAATCTAACACTGGAAATGAACTT
Found at i:17186076 original size:26 final size:26
Alignment explanation
Indices: 17186047--17186098 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17186037 CGATCCGATT
17186047 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17186073 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17186099 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17186365 original size:15 final size:15
Alignment explanation
Indices: 17186345--17186374 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
17186335 GCCAATATAA
17186345 GGGCCAAGTACCAGC
1 GGGCCAAGTACCAGC
17186360 GGGCCAAGTACCAGC
1 GGGCCAAGTACCAGC
17186375 ACCCATCGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.33, T:0.07
Consensus pattern (15 bp):
GGGCCAAGTACCAGC
Found at i:17186575 original size:25 final size:26
Alignment explanation
Indices: 17186541--17186592 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17186531 CCGATCCGAT
*
17186541 CTTAGACT-GGAATGAACT-TCGTATG
1 CTTAAACTGGGAATGAACTCT-GTATG
17186566 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
17186592 C
1 C
17186593 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 16 0.67
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:17187480 original size:26 final size:26
Alignment explanation
Indices: 17187444--17187496 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17187434 CTAGTCCGAT
* *
17187444 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17187470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17187496 C
1 C
17187497 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17188365 original size:904 final size:897
Alignment explanation
Indices: 17186147--17191918 Score: 6880
Period size: 851 Copynumber: 6.5 Consensus size: 897
17186137 TAGTAGACAA
** *
17186147 GATCCTTCCATTTCTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
1 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
17186212 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTATA
66 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATA
*
17186277 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
131 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-A-A
* * *
17186342 TAAGGGCCAAGTACCAGCGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACATACCCGCCC
194 T--------A-TA--A--GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * ** *
17186407 -GCCGACCCCCTATCGTCGAAACCCCAATGATGCCGGTTAGGTTCT-C--CG--G-T-----GAT
246 GGCC--CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT
* * * * * *
17186460 GTTGCCCCGACGACGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCAAGTGCTGTCGTAACC
309 GGTGCCCCGACGAAGAAAAATG-CGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAACC
* * * *
17186525 CTCAGTCCGATCCGATCTTAGACT-GGAATGAACTTCGTATGCTTAAACTGGGAATGAACTCTGT
372 CTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
17186589 ATGCCTAAGTTAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
437 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACA
* * * * * * * * * * **
17186654 AGTCGGGGATCAATTGGGTCCACCTCTGCGTGATGCCGAACCTACTGCCACAACCCTTGGTCTGG
502 AGCCGGGGATCGATCGGGTCC-CCTCTGCGTGCTTCCGATCTTGCTACCGCAACCCTCAGTCTGG
* * * * *
17186719 ACTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAAGGAATGGGCGG-GC
566 TCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---GCGGAGC
**
17186783 GGGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
627 GGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
17186848 GGTGAGTTTCGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCAT
691 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCAT
* * *
17186913 ACAATGCTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCATTTTCTATTTTTCACG
756 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
* * ** *
17186978 ATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTTAAATTTTTTTGGAAGGCGTTTTGGCCCCAAA
821 ATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
*
17187043 CTGGGTAGACGT
886 CTTGGTAGACGT
* *
17187055 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTT
1 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
17187120 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTATTGGCAGCAAACCTGTA
66 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATA
* *
17187185 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGAGCCAATA
131 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
17187250 TAAGGACCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCCAGCCACCCTGATCG-
196 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGT
* * ** * ** * **
17187314 CTGTAACCCTAATGCTACCGGTCAAGTTCTCCAACGATGCTCCGACGATGGTGCCCCGGGGAAGA
261 C-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * **
17187379 AAAATACGACACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTAGTCCGAT
325 AAAATGCG-CACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGAT
* * *
17187444 CTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCC
388 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * ** * *
17187509 ATGAAACGAGCATGCGGGGGCTCAGCCGACCAGTGGGGCAAGATGCACAAGCCGGGGATCGGTCA
453 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCG
** ** * * * * * *
17187574 GGTCCCTCTCTAAGTGCTTTTGATCTGGTTGCTGCAACCCTTAGTCTGGTCCGATCTTAAACTAG
518 GGTCCC-CTCTGCGTGCTTCCGATCTTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTAG
* * * * *
17187639 GAATGAACTACGTATGCCTAAGCTAACCGACAAAACGAGCGGACGGCGAGCAGGTGGGCACTACG
582 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGA--GCGGGC-GGCGGGCACTACG
* *
17187704 CCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATC
644 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
17187769 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
709 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCC
* **
17187834 TTCACGTGAAGTTTCATGGCAAGACGACCCATTTTC-ATTTTTTCACGATTTTTGAAACTTTTTG
774 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA-TTTTTCACGATTTTCAAAACTTTTTG
* * *
17187898 CGGTTC-GAATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCAAAACTTGGTAGACGT
838 CGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
17187957 GATCCTTGTATTTTTGTTGGCATGTA-AAAAACAATTCAGCTAAAAACTCGAAGGGTACAAGATT
1 GATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
17188021 TTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
65 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
17188086 AAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
130 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
17188150 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCGTCGGCCCCCCCGA
195 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCC--CGGCCCCCCCGA
* * * * *
17188215 TCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGTGATGCTGCCCCGGCGA
257 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGA
* * *
17188280 TGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCAAGTGCTGCCGCAACCCTCAATCCGGTCC
322 AGAAAAATGC-GCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCC
* *
17188345 AATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAA
385 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
*** * ** * **
17188410 CCCGTAAAACGAGCGTACGGGCGCTCAGTTGGCCAGAGGGGCAGGATGCACAAGCCAAGGATCGA
450 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGA
* * * * * *
17188475 TCCGATCCCCCTCTGCGTG-TTGCCAATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTATA
515 TCGGGT-CCCCTCTGCGTGCTT-CCGATCTTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGA
*
17188539 CTAGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGC-GAGCGGGCGGTCGGGCACTA
578 CTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAGCGGGCGG-CGGGCACTA
** * * * * * *
17188603 CGTTGGCCAAAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGCAGGCGGGTTTAGCCATA
642 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*** *
17188668 TCTTCATATTTCTATGTGCCAATGCCA-TTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAG
707 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAG
*
17188732 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
772 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTT
* *
17188797 GCAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
837 GCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* ** * ** *
17188858 GATCCTTGTATTTTT-TCTGGTACACATAAAAAAATTCAGCTAAAAACTAAAAGTCTACAAGATT
1 GATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
17188922 TTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTAT
65 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
* **
17188987 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAATTTTGATGAGGGATAGGGGGCCAAT
130 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* ** *** *
17189052 ATGAGCACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGAAACCCCCAATC
195 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCCCGATC
* * * *
17189117 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGGTGATGGTGCCCCAACGAAG
259 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAG
*
17189182 AAAAAT--GC-CC-G---A-----A-CCCAGTATGTGCT-CCTGCAA----C---CC--T-CGAT
324 AAAAATGCGCACCAGCACATGCCGAGCCCAGCATGTGCTGCC-GCAACCCTCAGTCCGGTCCGAT
* * *
17189223 C-----C-----A-G---TCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTGAGTCAACCC
388 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* *
17189272 ACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCG
453 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCG
** * *
17189337 GGTCCCCCTCTATGTGCTACCGATCTTGCTACTGCAACCCTCAGTCTGGTCCGATCTTAGACTAG
518 GGT-CCCCTCTGCGTGCTTCCGATCTTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTAG
* * * * * *
17189402 GAATGAATTCCGTACGCTTAAGCCAACCGACG-AA--A--TGATC--G-GGTGGGCACTACGCCG
582 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAGCGGGCGGCGGGCACTACGCCG
* * * ** * * *
17189459 GCCAGAGAGACGGGTTGCGCAAGCCGTGAATCGATAGTGTGGCGGGCGGGTTTAGCCATATCTTC
647 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
17189524 ATATTTCTACATGCCAATGCCA-TTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTC
712 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
17189588 ACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCAGT
777 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
** * * * *
17189653 TCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCTAAACTTGGTAGATGT
842 TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
17189709 GATCCTTGTATTTTTGTTAGCATGCATAAAAAAATTCACCTAAAAACTCGAAGTGTACAAGATTT
1 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
17189774 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
66 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATA
*
17189839 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATA
131 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
**
17189904 TAAGGGCCAAGTACCAGTGCCCATCGCACATCATGTGCGCACACCCTCCCCGGCCCCCCCGATCG
196 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCG
* * **
17189969 -CTGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA--------CGATGGTGCACCGGTGAAG
260 TC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAG
* * * * *
17190022 AAAAATGCGACACCAGCACATGCCTAAGCCCAGCATGTGCTACCGTAACCCT-AGATCTGGTCTG
324 AAAAATGCG-CACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCCGGTCCG
*
17190086 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
386 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** *
17190151 ACACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGAC
451 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGAT
* * *
17190216 CGGGTCTTCCTCTGCGTTCTGT-CGATCTTGCTACCGCAACCCTCAG-CTCGGTCTGATCTTAGA
516 CGGGTC-CCCTCTGCGTGCT-TCCGATCTTGCTACCGCAACCCTCAGTCT-GGTCCGATCTTAGA
* *
17190279 CTGGGAATGAGCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-GCGGGCGGGCGGGCACCC
578 CTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAGCGGGC-GGCGGG----C
* * * **
17190343 ACTACGCCGGCCAGAGAGACAGGATGCACAAACCACGGATCGATAGGGTGGTAGGTGGGTTTAGG
638 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
17190408 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
703 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCT
* **
17190473 TAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCATTTTTCTATTTTTCACGATTTTGGAAAC
768 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA-TTTTCTATTTTTCACGATTTTCAAAAC
* * *
17190538 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCCAAACATGGTAGACT
832 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
17190603 T
897 T
*
17190604 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAGGTGTACAAGATTT
1 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
17190669 TGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAAACCT-G
66 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AAACCTAT
* * * *
17190733 CAAATCTCGAATGCTCCTTTCAGGGGGTATGAGTTTCTC-ATGGTTTGATGAGGGATAGGGGGCC
130 AAAATCTCAAATGCT-CTTTAAGGGGGTGTGAG-TTCTCGA-GGTTTGATGAGGGATAGGGGGCC
* *
17190797 -ATATAAGGGCCAAGCACCAGCACGCCATCGCACATTCATGTGCGTACACCCCCTCCGGCCCCTC
192 AATATAAGGGCCAAGTACCAGCAC-CCATCGCACA-TCATGTGCGCACACCCCC-CCGGCCCC-C
* * * *
17190861 CCGATCGTACGGAACCGCAATGCCGCCGGTTAGGTTCTCCGGTGATGCCTCCGGCGATGCTGCCC
253 CCGATCGT-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG-CTCCGGCGATGGTGCCC
* * * *
17190926 CGACGGAAGACAAATGCGGCACCAGCACATGCCTGAGCCCAGTATGTGCTCCCGCATACGCCTCG
316 CGAC-GAAGAAAAATGC-GCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCA-AC-CCTCA
* *
17190991 GTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGGCTTAGACTGGGAGTGAACT--GTAGA
376 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT-GCTTAGACTGGGAATGAACTCCGT--A
* * *
17191054 TGCCTAAGTCAACCCACG-AATGAGCGTGCGGGGCTGCTCAG-CGGCGCAGCGGGGCGGGATGCG
438 TGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGC-GCTCAGCCGGC-CAGAGGGGCGGGATGCA
* * * * *
17191117 TAAGCC-GAGATCGGGTCGGGTTCCCCATCTTTGCGCTG-TT-TGATCTTGCTA-CGCAA-CAT-
500 CAAGCCGGGGATC-GATCGGG-TCCCC-TC--TGCG-TGCTTCCGATCTTGCTACCGCAACCCTC
* * * * * ** *
17191176 TGGCTTGATCCGATCTTAGATTGGGAATGAGGTCCGTATGCCTATGCCAACCGACGAAACGAGC-
559 AGTC-TGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* *
17191240 -A---GGCAGGCGGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGT
623 GAGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* ** *
17191301 GGTAGGTGGGTTTAGGCACATCTTCATATTTCGGTGTGCCAAAGCCATTTTTATGGCTTGAAAAT
687 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAAT
* * * *
17191366 TCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGATGACTCGTTTTCTATTTTT
752 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
* ** ** *
17191431 CATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCC
817 CACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
17191496 CAAACTTGGTAGACGT
882 CAAACTTGGTAGACGT
* *
17191512 GATCCTTGTATTGTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
1 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * *
17191577 TGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-ATCGGGTACTGGTAGCAAACCTGT
66 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGCAGCAAACCTAT
* * *
17191641 AAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAAT
130 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
17191706 ATAAGGGCCAAGTACCAGCATCCATCGCACATCATTTGCGCACA-----CC-G---CCCCGATCG
195 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
* ** * *
17191762 TCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGATGATGCTCCGGCGATAGTGCCCTGACGAAGA
260 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * **
17191827 AAAATGTGGCACCAGCAGATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCATTCCGAT
325 AAAATG-CGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGAT
*
17191892 CTTAGATTGGGAATGAACTCCGTATGC
388 CTTAGACTGGGAATGAACTCCGTATGC
17191919 CTAAGCCAAA
Statistics
Matches: 4228, Mismatches: 486, Indels: 320
0.84 0.10 0.06
Matches are distributed among these distances:
840 20 0.00
842 1 0.00
843 1 0.00
844 2 0.00
845 1 0.00
848 4 0.00
850 2 0.00
851 500 0.12
852 7 0.00
853 1 0.00
854 1 0.00
855 18 0.00
856 3 0.00
858 2 0.00
859 173 0.04
860 3 0.00
861 3 0.00
862 1 0.00
864 2 0.00
865 5 0.00
870 2 0.00
875 5 0.00
876 2 0.00
878 2 0.00
879 2 0.00
880 5 0.00
881 175 0.04
882 2 0.00
884 3 0.00
885 16 0.00
886 2 0.00
887 1 0.00
888 2 0.00
889 42 0.01
890 2 0.00
891 43 0.01
892 50 0.01
893 159 0.04
894 78 0.02
895 213 0.05
896 44 0.01
897 44 0.01
898 26 0.01
899 11 0.00
900 205 0.05
901 369 0.09
902 275 0.07
903 284 0.07
904 490 0.12
905 16 0.00
906 39 0.01
907 45 0.01
908 389 0.09
909 152 0.04
912 11 0.00
913 53 0.01
914 5 0.00
915 45 0.01
916 52 0.01
917 90 0.02
918 10 0.00
919 11 0.00
920 5 0.00
921 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGT
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
AAATGCGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGT
CCCCTCTGCGTGCTTCCGATCTTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTAGGAAT
GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAGCGGGCGGCGGGCACTACGCCGGCCA
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGG
GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
Found at i:17188377 original size:26 final size:26
Alignment explanation
Indices: 17188348--17188400 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17188338 CCGGTCCAAT
*
17188348 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
17188374 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
17188400 C
1 C
17188401 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:17190124 original size:26 final size:26
Alignment explanation
Indices: 17190088--17190140 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17190078 CTGGTCTGAT
17190088 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17190114 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17190140 C
1 C
17190141 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17191559 original size:908 final size:889
Alignment explanation
Indices: 17189233--17191917 Score: 3349
Period size: 895 Copynumber: 3.0 Consensus size: 889
17189223 CCAGTCTGAT
* * * * * *
17189233 CTTAGACTGGGAATGAACTCCGTATGCTTGAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAAC
** * * * ** **
17189298 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTATGTGCTACCGATCT
65 CGGCCAGAGGGGCGGGATGCGTAAGCCGGAGATCGACCGGGTCTCCCTCTGCGT-CTGTCGATCT
* * * * ** * *
17189363 TGCTACTGCAACCCTCAG-TCTGGTCCGATCTTAGACTAGGAATGAATTCCGTACGCTTAAGCCA
129 TGCTACCGCAACCATCAGCTC-GATCCGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCA
* * * * *
17189427 ACCGACGAAATGATC-G-GGTGGGCACTACGCCGGCCAGAGAGACGGGTTGCGCAAGCCGTGAAT
193 ACCGACGAAACGAGCGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* ** * * * * *
17189490 CGATAGTGTGGCGGGCGGGTTTAGCCATATCTTCATATTTCTACATGCCAATGCCA-TTTTATGG
258 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
*
17189554 CTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTT
323 CTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * ** *
17189619 TCTATTTTTCACAATTTTCAAAACTTTTTGCAGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAG
388 TCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAG
* * * * * *
17189684 TTTTGACCCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTAGCATGCATAAAAAAATTCACC
453 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
17189749 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
518 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
17189814 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
583 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AGG
* **
17189879 TTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGTGCCCATCGCACATCATGTGCGC
647 TTTGATGAGGGATAGGGGGC-CATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-
*
17189944 ACACCCTCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCC--GA---
710 ACACCC-CCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGTGATGC
* * *
17190003 -----CGATGGTGCACCG--GTGAAGAAAAATGCGACACCAGCACATGCCTAAGCCCAGCATGTG
773 TCCGGCGAT-GTGCCCCGACG-GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
* * * *
17190061 CTACCGTAACCCT-AGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATAT-G
836 CTACCGCAACCCTCAGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGG
17190114 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAAC
* *
17190179 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGACCGGGTCTTCCTCTGCGTTCTGTCGATCT
65 CGGCCAGAGGGGCGGGATGCGTAAGCCGGAGATCGACCGGGTCTCCCTCTGCG-TCTGTCGATCT
* * *
17190244 TGCTACCGCAACCCTCAGCTCGGTCTGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAA
129 TGCTACCGCAACCATCAGCTCGATCCGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAA
* *
17190309 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACCCACTACGCCGGCCAGAGAGACAGGATGCACAA
194 CCGACGAAACGA----GC-GGC-GGCGGG----CACTACGCCGGCCAGAGAGACGGGATGCGCAA
* **
17190374 ACCACGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
249 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *
17190439 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAAC
314 TTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
17190504 GACTCATTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
379 GACTC-GTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *
17190569 TCAGAAGGGGTTTTGGCCCCAAACATGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAA
443 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
17190634 AAAATTCAGCTAAAAACTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTT
508 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
17190699 CAGACACTTTAATGGCTACAGGCAGCAAAACCTG-CAAATCTCGAATGCTCCTTTCAGGGGGTAT
573 CAGACACTTTAATGGCTACTGGCAGC-AAACCTGTAAAATCTCAAATGCT-CTTTAAGGGGGTGT
*
17190763 GAGTTTCTCATGGTTTGATGAGGGATAGGGGGCCATATAAGGGCCAAGCACCAGCACGCCATCGC
636 GAG-TTCTCA-GGTTTGATGAGGGATAGGGGGCCATATAAGGGCCAAGTACCAGCAC-CCATCGC
* *
17190828 ACATTCATGTGCGTACACCCCCTCCGGCCCCTCCCGATCGTACGGAACCGCAATGCCGCCGGTTA
698 ACA-TCATGTGCG-ACACCCCC-CCGGCCCC-CCCGATCGT-CGGAACCCCAATGCCGCCGGTCA
*
17190893 GGTTCTCCGGTGATGCCTCCGGCGATGCTGCCCCGACGGAAGACAAATGCGGCACCAGCACATGC
758 GGTTCTCC-GTGATG-CTCCGGCGATG-TGCCCCGACGGAAGAAAAATGCGGCACCAGCACATGC
* * *
17190958 CTGAGCCCAGTATGTGCTCCCGCATACGCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTC
820 CTGAGCCCAGCATGTGCTACCGCA-AC-CCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTC
17191023 CGTATGG
883 CGTATGG
* * *
17191030 CTTAGACTGGGAGTGAACT-GTAGATGCCTAAGTCAACCCACG-AATGAGCGTGCGGGGCTGCTC
1 CTTAGACTGGGAATGAACTCGT--ATGCCTAAGTCAACACACGAAACGAGCGTGC-GGGC-GCTC
* * **
17191093 -AGCGGCGCAGCGGGGCGGGATGCGTAAGCC-GAGATCGGGTCGGGT-TCCCCATCTTTGCG-CT
62 AACCGGC-CAGAGGGGCGGGATGCGTAAGCCGGAGATC-GACCGGGTCT-CCC-TC--TGCGTCT
* ** * * *
17191154 GTTTGATCTTGCTA-CGCAA-CATTGGCTTGATCCGATCTTAGATTGGGAATGAGGTCCGTATGC
121 G-TCGATCTTGCTACCGCAACCATCAGCTCGATCCGATCTTAGACTGGGAATGAGCTCCGTATGC
* * *
17191217 CTATGCCAACCGACGAAACGAGCAGGCAGGCGGGCACTATGCCGGCCAGAGAGATGGGATGCGCA
185 CTAAGCCAACCGACGAAACGAGC-GGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
17191282 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGTGTGCCAAAGCC
248 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
17191347 ATTTTTATGGCTTGAAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGA
313 ATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * **
17191412 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
378 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *
17191477 TCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTGTTGTTGGCATGGACAAA
443 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
17191542 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTT
508 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
17191607 CAGACACTTT-ATCGGGTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTG
573 CAGACACTTTAAT-GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
17191671 AGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCAC
637 AGTTCTC-AGGTTTGATGAGGGATAGGGGGCC-ATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
17191736 ATCATTTGCG-CA---CACC-G---CCCCGATCGTCGGAACCCCAATGCCGCAGGTCAGGTTCTC
700 ATCATGTGCGACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
17191793 CGATGATGCTCCGGCGATAGTGCCCTGAC-GAAGAAAAATGTGGCACCAGCAGATGCCCGAGCCC
765 CG-TGATGCTCCGGCGAT-GTGCCCCGACGGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
* * ** *
17191857 AGCATGTGCTGCCGCAACCCTCAGTCCATTCCGATCTTAGATTGGGAATGAACTCCGTATG
828 AGCATGTGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
17191918 CCTAAGCCAA
Statistics
Matches: 1578, Mismatches: 164, Indels: 116
0.85 0.09 0.06
Matches are distributed among these distances:
881 179 0.11
882 3 0.00
885 1 0.00
887 1 0.00
889 43 0.03
890 2 0.00
891 45 0.03
892 19 0.01
893 116 0.07
894 75 0.05
895 209 0.13
896 43 0.03
897 39 0.02
898 24 0.02
899 10 0.01
900 28 0.02
901 1 0.00
903 4 0.00
905 8 0.01
906 37 0.02
907 45 0.03
908 208 0.13
909 152 0.10
911 1 0.00
912 10 0.01
913 56 0.04
914 5 0.00
915 44 0.03
916 55 0.03
917 90 0.06
918 10 0.01
919 11 0.01
920 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAACC
GGCCAGAGGGGCGGGATGCGTAAGCCGGAGATCGACCGGGTCTCCCTCTGCGTCTGTCGATCTTG
CTACCGCAACCATCAGCTCGATCCGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
GAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAGGTTTG
ATGAGGGATAGGGGGCCATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCC
CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTGATGCTCCGGCGA
TGTGCCCCGACGGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAAC
CCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGG
Done.