Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 96 of 117
Found at i:17194074 original size:26 final size:26
Alignment explanation
Indices: 17194045--17194097 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17194035 CTGGTCCGAT
*
17194045 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17194071 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17194097 C
1 C
17194098 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17194801 original size:733 final size:713
Alignment explanation
Indices: 17191249--17194822 Score: 4060
Period size: 724 Copynumber: 5.0 Consensus size: 713
17191239 CAGGCAGGCG
* *
17191249 GGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
1 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
**** * * *
17191314 AGGCACATCTTCATATTTCGGTGTGCCAAAGCCATTTTTATGGCTTGAAAATTCGTACAATGGTC
66 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * ** * *
17191379 CCTTAAGCCTTCACGTGAAGTTTCACGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAA
131 CCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTTAAA
* *
17191444 ACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGA
196 ACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGTCCCCAAACTT-GTAGA
* * * *
17191509 CGTGATCCTTGTATTGTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
259 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCT-AAAACTTGAAGTGTACAAGA
* * *
17191574 TTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-ATCGGGTACTGGTAGCAAACC
323 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGCAGCAAACC
* * *
17191638 TGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCC
387 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * **
17191703 AATATAAGGGCCAAGTACCAGCATCCATCGCACATCATTTGCGCACA----CC-G---CCCCGAT
452 AATATAAGGGCCAAGTACAAGCACCCATCGCACATCAAGTGCGCACACCCCCCGGCCCCCCCGAT
* * ** * * * **
17191760 CGTCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGATGATGCTCCGGCGATAGTGCCCTGACGAA
517 CGTCGAAACCCCAATG-CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAA
* * * * * * *
17191825 GAAAAATGTGGCACCAGCAGATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCC-ATTCC
581 GAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT-ACGTAACCATCGGTCCGA-TCC
* * * *
17191889 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAA--G--G--ATGAA---ACGAGCGAG
644 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAAACCGACGAAATCAACCCACAAACGAG
*
17191945 CGGGCG
708 CGGGCA
* * *
17191951 GGAACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGATGGTAGGTGGGTTT
1 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
17192016 AGGCACATCTTCATGTTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCGTC
66 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* ** * * *
17192081 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACCCATTTTC-ATTTTTTCACGATTTTTGA
131 CCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACAACTCATTTTCTA-TTTTTCATGATTTTTAA
** * ** * * * * *
17192145 AACTTTTTGCGATTC-AAAATTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGCAA
195 AACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGTCCCCAAACTT-GTAG
* * * *
17192209 ACGTGATCCTTGTATTTTTGTTGGCATCCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
258 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCT-AAAACTTGAAGTGTACAAG
* * * *
17192274 ATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGTAGCAAACT
322 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
**
17192339 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGAAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
387 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * * *
17192404 AATATATGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-ACCCCCGA
452 AATATAAGGGCCAAGTACAAGCACCCATCGCACATCAAGTGCGCACA-CCCCCCGGCCCCCCCGA
* * * *
17192468 TCGTCGGGAACCCC-ATGCCGTCGGTCAGGTTTCTCCCGACGATGCTTGCCGACAATGGTGCCCC
516 TCGTC-GAAACCCCAATG-CGCCGGTCAGG-TTCT-CCGGCGATGC-T-CCGACGATGGTGCCCC
* * * *
17192532 GATGAAG-AAAAT--GGCAACCAGCCACATGC-CTGAGCCCCAGCATGTGCTGCCGTAACCCTTG
575 GGTGAAGAAAAATGCGGC-ACCAG-CACATGCTC-GAG-CCCAGCATGTGCT-ACGTAACCATCG
* * * * * * * *
17192593 ATCCGGTCCGATCTTAAGAATGGG-ATG-ACTCCTTTATGCCTAAGCCAA-CGACCTAAAACGAG
635 GTCCGATCCGATCTT-AGACTGGGAATGAACTCC-GTATGCCTAAGCAAACCGA-CGAAATC-AA
*** *** * *
17192655 CGGGCGGGCAGGGTGGGCA
696 CCCACAAAC-GAGCGGGCA
* *
17192674 GGCAACTACGCCGGCTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
1 GGC-ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* **
17192739 TAGGCACATCTTCATATTTCTACATGCCAATGCCATATTTATGGCTTGTACGTTCATACAATGGT
65 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * * *
17192804 CCCTTAAGCCTTCACGTTAAGTTTCATGCCAAGA-AGACCCATTTTTTATTTTTCACGATTTTCA
130 CCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACA-ACTCATTTTCTATTTTTCATGATTTTTA
* *
17192868 AAACTTTTT-TGGTTCGGGATTTTTTAAAATTTTTTCAAAAAGAGTTTTGTCCCCAAACATTGTA
194 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGTCCCCAAAC-TTGTA
17192932 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAACACTTGAAGTGTACAA
257 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAA-ACTTGAAGTGTACAA
**
17192997 GATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
321 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
17193062 CTGTAAAATCTCAAATGC-CTTTTAAGTGGGTGTGACTTCTCGAGGATTGATGAGGGATAGGGGG
386 CTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * * ** *
17193126 CCAATATAAAGGCCAAGTA-ATGGCACCAATTGCACATCACGCACACACACCCCCACGGCCCCCC
450 CCAATATAAGGGCCAAGTACA-AGCACCCATCGCACATCAAGTGCGCACACCCCC-CGGCCCCCC
* * * * *
17193190 CGACCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTACCCTGG
513 CGATCGTCGAAACCCCAATG-CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGG
* *
17193255 TGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCATTGGTCCGA
577 TGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT-ACGTAACCATCGGTCCGA
* * * * *** * *
17193320 TCCGATCTTAGACTGGGAATGGACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGAGG
641 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAACCGACGAAATCAACCCACAAACG
*
17193385 GGCGGGCA
706 AGCGGGCA
** * *
17193393 GGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGTGTTT
1 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * * *
17193458 AGGCACATCTTCATATTTCTACTTTCCAATGCCATTTTAATGGCCTGTAAATTCATAAAATGGTC
66 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
17193523 CCCTAAGCCTTCATGTAAAG-TTCATGGCAAGACGAATTGC--TTTCTATTTTTCATGATTTTTC
131 CCTTAAGCCTTCACGTAAAGTTTCATGGCAAGAC-AACT-CATTTTCTATTTTTCATGATTTTTA
* * **
17193585 AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGTCCCCAAACAAAGTAG
194 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGTCCCCAAAC-TTGTAG
* *
17193650 ACATGATCCTTGTATTTTTGTTGGCATGCTA-AAAAAAAATCAGCTAAAAACTCGAAGTGTACAA
258 ACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAAATCAGCT-AAAACTTGAAGTGTACAA
* * * *
17193714 GATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTACTGGCTACCGACAGCAAAC
321 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
17193779 CTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
386 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * **
17193844 CAATATAAGGGCCAAGTACAAGCACCCATCACACATCATGTGCGCACACCCCCCCCCCGGCCCAC
451 CAATATAAGGGCCAAGTACAAGCACCCATCGCACATCAAGTGCGCACACCCCCCGGCC--CCC-C
* * * *
17193909 CGATTGTCAAAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGG
513 CGATCGTCGAAACCCCAATGC-GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGG
* * * * * * * *
17193974 TGAAGAAAAATACGGAACCAGCACATGCTCGAGCCTAGCATTTGCTGTCGTAACCTTCGGTCTGG
577 TGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT-ACGTAACCATCGGTCCGA
* * * *
17194039 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGT
641 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA-A----G--CAAA--CCG-A---CGAAAT
* *
17194104 CAACCCACAAAACGAGCGTGCG
693 CAACCCAC-AAACGAGCGGGCA
* ** * * *
17194126 GGCACTACGCCGGCCAGAGACACGGGATGCGCAAGCCGTCAATTGATAGGATTGTAGGTGGGTTT
1 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
17194191 AGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
66 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
17194256 CCTTAAGCCTTCACGTGACGTTTCGTGGCAAGACAACTCATTTTCTATTTTTCATGATTTTTGAA
131 CCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTTAAA
* * *
17194321 ACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTCGAAGGATTTTTGGCCCAAAACTTGGTAGA
196 ACTTTTTATGGTTCGGGATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGTCCCCAAACTT-GTAGA
* * * *
17194386 CGTGATCCTCGTATTTTTTTTTGGCATGCACAAAAAAATTTAGCTCAAAACTTGAAGTGTACAAG
259 CGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAAATCAGCT-AAAACTTGAAGTGTACAAG
* * *
17194451 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGTCACTTTAATGGGTACTGGCAGCAAACC
322 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
17194516 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGTCC
387 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
17194581 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCACACCCCCCGGCCCCCCCGAT
452 AATATAAGGGCCAAGTACAAGCACCCATCGCACATCAAGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * *
17194646 CGCCGAAACCCTAATGTCGCCGGTCAAGTTCTCCGGTGATGCTCCGACAATGGTGCCCCGAG-GA
517 CGTCGAAACCCCAATG-CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG-GTGA
* * * * *
17194710 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTACGGCAACCCTCAGTCCGATCC
580 AGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTAC-GTAACCATCGGTCCGATCC
* * *
17194775 GATCTTAAATTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAA
644 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAAACCGACGAAA
17194823 CCAGGTGCGG
Statistics
Matches: 2472, Mismatches: 313, Indels: 156
0.84 0.11 0.05
Matches are distributed among these distances:
701 266 0.11
702 189 0.08
706 2 0.00
707 1 0.00
709 24 0.01
710 15 0.01
711 15 0.01
712 23 0.01
713 67 0.03
714 7 0.00
716 3 0.00
717 278 0.11
718 167 0.07
719 159 0.06
720 19 0.01
721 77 0.03
722 28 0.01
723 37 0.01
724 447 0.18
725 28 0.01
726 4 0.00
728 4 0.00
729 1 0.00
732 10 0.00
733 277 0.11
734 66 0.03
735 42 0.02
736 216 0.09
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (713 bp):
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTTAAA
ACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGTCCCCAAACTTGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAACTTGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACAAGCACCCATCGCACATCAAGTGCGCACACCCCCCGGCCCCCCCGATCGTC
GAAACCCCAATGCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAA
ATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACGTAACCATCGGTCCGATCCGATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGCAAACCGACGAAATCAACCCACAAACGAGCGGGCA
Found at i:17196381 original size:26 final size:26
Alignment explanation
Indices: 17196345--17196397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17196335 CCGGTCCTAT
* *
17196345 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17196371 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17196397 C
1 C
17196398 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17197236 original size:26 final size:27
Alignment explanation
Indices: 17197207--17197264 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
17197197 CCGGTCCTAT
*
17197207 CTTAGATTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
*
17197233 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
17197260 CTTAG
1 CTTAG
17197265 TCAACCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:17198910 original size:26 final size:26
Alignment explanation
Indices: 17198881--17198933 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17198871 CCAGTCCGAT
17198881 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17198907 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17198933 C
1 C
17198934 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17199603 original size:802 final size:804
Alignment explanation
Indices: 17197167--17199631 Score: 2356
Period size: 802 Copynumber: 3.0 Consensus size: 804
17197157 CACATGCCCG
* * * * * * * *
17197167 AGCCCAGCATGTGCTATCGTAACCCTCGGTCCGGTCCTATCTTAGATTGGGAATGAACTCCGTAT
1 AGCCCAACATGTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAAATACGTAT
* ** ** ** *
17197232 GCTTAGACTGGGAATGAACTCTGTATGCCTTAGTCAACCCATGAAACAAGTGTGCGGGCGCTCAA
66 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCACTCAA
* * * ** * * ** * * * * * * ***
17197297 TCGGCCAGAGGGGCGGGATGCGCAAGACGGGGACCGGCCGAGACCCCCTCTACGTGCT-AAAATA
131 CCAGCCAAAAAGGCGAGATGCGTAACTCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATA
* * ** * * *
17197361 TGTGCTGCCGTAACCCTCAGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
196 -CTGCTGTCACAACCCTGAGTCT-GGTCGGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
** **** * * * *
17197425 CAACTGACGAAACGAGCGGGCGGGTGGGCAGGCGGGCACTACATTGGCTACAGAGACGGGATGCG
259 CAACTGAC-AAA--A-CAAGC----GGGCAGGC--GCACTACGCCAGCCAGAGAGAAGAGATGCG
* * * * * *
17197490 CAAGTCGTGGA-TCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
314 CAAGCCAT-GATTCAATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACGTGCCAAT
* * * * * * * * *
17197554 GCCATTTTTATGGGTTGTAAATTCATACAATCGTCCCTTCAGCCTTCACGTGAAGTTTTAATGGC
378 ACCACTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAACCGTCACGTGAAG-TTTCATGGC
* * * * * * *
17197619 AAGACGACTCGTTTTTTATTTTTCA-TAATTTTTGAAACATTTT-ACGGTTCAGGATTTTTTAAA
442 AAGACAACTC-ATTTTTATTTTTCACGAA-TTTTCAAACATTTTGTC-ATTCAAGATTTTTTAAA
* * * * *
17197682 A-TTTTTC-GAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCA
504 ATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTCGAAGATGTGATCCTTGTATTGTTT-TTAGCA
* * *
17197744 TGTACAAAAATATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
567 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
17197809 CCCCATTTCAAAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
632 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * * * *
17197874 GGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAATAT-AGGGCCAAGTACCAGCACCT
697 GGGTGTGAGTTCTCAAGCTTTGATGAGGGATAAGGGGCCAATATAAGCGCCAAGTACCAGCACCC
* * * **
17197938 ATCCCACATCATGTGCGCACAACCCACCGGCCACCCCGATCGCTGAAACCCCA
762 ATCGCACATCATGTGCACACAACCCCCCGGCCA--CC-A----T--AA-CCTT
* * * * *
17197991 ATGCCTTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTACCCTGATGAAGAAAAATGCGGCA
1 A-G-C--C---CA---AC-AT---G-TGCTAC--CG-T--AACCCT--CG--G-----T-C--C-
** * ** * ** *
17198056 ACCCTCGGTCCAGTCT-GATCTTAGACTGGGAATGAAATACGTATGCTTAGACTGGGAATGAACT
33 AGTC-CGAT-C--T-TAGA-CTAGGAATGAAAT------ACGTATGCTTAGACTGGGAATGAACT
* ** * **
17198120 CTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGTTCAACCAGCCAGAGGGGCGAGATG
86 CTGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCACTCAACCAGCCAAAAAGGCGAGATG
* * *
17198185 CGTAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATACTGCTGTCACAACCCTTAGT
151 CGTAACTCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATACTGCTGTCACAACCCTGAGT
* ** * *
17198250 CTGGTCGGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATTGATGAAACGAGTGGGCA
216 CTGGTCGGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACAAAACAAGCGGGCA
* * * * *
17198315 GGCGGGCACTATGCCAGCCAGGGAGAAGGGATGCGCAAGCCGTGATTTAATAGGGTGGTAGGTGG
281 GGC--GCACTACGCCAGCCAGAGAGAAGAGATGCGCAAGCCATGATTCAATAGGGTGGTAGGTGG
* * * *
17198380 GTTTAGGCACATCTTCATATTTCTATGTGCCAATACCATTTTTATAGCTTGTAAATTCATACAGT
344 GTTTAAGCACATCTTCATATTTCTACGTGCCAATACCACTTTTATAGCTTGTAAATTCATACAAT
* *
17198445 GGTCCCTTAAACCGTCACGTGAAGTTTCATGGCAAGACAACTCATTTTTATTTTTTACGATTTTT
409 GGTCCCTTAAACCGTCACGTGAAGTTTCATGGCAAGACAACTCATTTTTATTTTTCACGAATTTT
* ** ** * *
17198510 GAAACATTTTGTGGTTCAAGATTTTTTAAAATTTTTTCAGAATTAGTTTTGGTCCCAAACTTCGT
474 CAAACATTTTGTCATTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGA
*
17198575 AGATGTGATCCTTGTATTGTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
539 AGATGTGATCCTTGTATTGTTTTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
17198640 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAA
604 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
17198705 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGCTTTGATGAGGGATAAGGGG
669 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGCTTTGATGAGGGATAAGGGG
* *
17198770 CTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACAACCCCCCGGCCACCAT
734 CCAATATAAGCGCCAAGTACCAGCACCCATCGCACATCATGTGCACACAACCCCCCGGCCACCAT
17198835 AACCTT
799 AACCTT
* *
17198841 AGCCCAACATGTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTAT
1 AGCCCAACATGTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAAATACGTAT
*
17198906 GCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCA
66 GCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCACTCA
** * * * *
17198970 GTCGGCCAAAAAGGTGGGATGCGTAAC-CTGAGGATCGGTCGGGTCCTCCTCTGCGTGCTGCTGA
130 ACCAGCCAAAAAGGCGAGATGCGTAACTC-GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGA
* * * *
17199034 TCCTGCTGTCATAACCCTCGA-TCTGGTCTGTTCTTAGACTGGGAATGAACT-TCGTATGCCTAA
194 TACTGCTGTCACAACCCT-GAGTCTGGTCGGATCTTAGACTGGGAATGAACTCT-GTATGCCTAA
* * *
17199097 GCCAACTGACAAAACAAGCGGGC-GGC-CACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCAT
257 GCCAACTGACAAAACAAGCGGGCAGGCGCACTACGCCAGCCAGAGAGAAGAGATGCGCAAGCCAT
* * *
17199160 GGA-TCGATAGGGTGGTTGGTGGGTTTAAGCACATCTTCATATTTCTACGTGCCAATGCCACTTT
322 -GATTCAATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACGTGCCAATACCACTTT
* * * *
17199224 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
386 TATAGCTTGTAAATTCATACAATGGTCCCTTAAACCGTCACGTGAAGTTTCATGGCAAGACAACT
* * * *** * *
17199289 CGTTTTCTATTTTTCA-TAATTTTCAAACCTTTTGTCATTTGGGATTTTTTGAAATTTTTTCGGA
451 CATTTT-TATTTTTCACGAATTTTCAAACATTTTGTCATTCAAGATTTTTTAAAATTTTTTCAGA
* * * *
17199353 AGGAGTTTTGGCCCCAAACTTGGAAGATGTGATCCTTGTATTTTTTTTAGCCTGGACAAAAAAAT
515 AGGAGTTTTGGCCCCAAACTTCGAAGATGTGATCCTTGTATTGTTTTTAGCATGCACAAAAAAAT
* *
17199418 TCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
580 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
17199483 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCT
645 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * ** * *
17199548 CGAGGTTTGATGAGGGATTGGGGGCCAATATAAGCGCCTAGTGCCAGCACCCATCGCACATCATG
710 CAAGCTTTGATGAGGGATAAGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCGCACATCATG
* *
17199613 TGCGCACACCCCCCCGGCC
775 TGCACACAACCCCCCGGCC
17199632 CCCCCGATCG
Statistics
Matches: 1379, Mismatches: 201, Indels: 144
0.80 0.12 0.08
Matches are distributed among these distances:
802 442 0.32
803 10 0.01
805 6 0.00
806 186 0.13
807 1 0.00
812 7 0.01
813 3 0.00
815 1 0.00
816 3 0.00
817 2 0.00
818 1 0.00
820 1 0.00
821 1 0.00
824 1 0.00
825 1 0.00
826 2 0.00
828 2 0.00
830 5 0.00
831 2 0.00
832 1 0.00
833 2 0.00
834 1 0.00
835 6 0.00
836 1 0.00
838 1 0.00
839 5 0.00
840 1 0.00
841 2 0.00
842 1 0.00
843 2 0.00
844 5 0.00
846 2 0.00
848 2 0.00
849 1 0.00
850 3 0.00
851 2 0.00
853 2 0.00
854 1 0.00
856 1 0.00
857 2 0.00
858 47 0.03
859 235 0.17
860 186 0.13
861 3 0.00
862 6 0.00
864 3 0.00
865 1 0.00
867 2 0.00
868 171 0.12
869 4 0.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (804 bp):
AGCCCAACATGTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAAATACGTAT
GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCACTCAA
CCAGCCAAAAAGGCGAGATGCGTAACTCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATA
CTGCTGTCACAACCCTGAGTCTGGTCGGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
ACTGACAAAACAAGCGGGCAGGCGCACTACGCCAGCCAGAGAGAAGAGATGCGCAAGCCATGATT
CAATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACGTGCCAATACCACTTTTATAG
CTTGTAAATTCATACAATGGTCCCTTAAACCGTCACGTGAAGTTTCATGGCAAGACAACTCATTT
TTATTTTTCACGAATTTTCAAACATTTTGTCATTCAAGATTTTTTAAAATTTTTTCAGAAGGAGT
TTTGGCCCCAAACTTCGAAGATGTGATCCTTGTATTGTTTTTAGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGCT
TTGATGAGGGATAAGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCGCACATCATGTGCACA
CAACCCCCCGGCCACCATAACCTT
Found at i:17200668 original size:26 final size:26
Alignment explanation
Indices: 17200631--17200683 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17200621 CCGGTCCGAT
* * *
17200631 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
17200657 CTTAGACAGGGAATAAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
17200683 C
1 C
17200684 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCGTATG
Found at i:17201552 original size:26 final size:26
Alignment explanation
Indices: 17201523--17201575 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17201513 CTAGTCCGAT
* *
17201523 CTTAGACTGAGAATGAAGTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
17201549 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17201575 C
1 C
17201576 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17204179 original size:26 final size:25
Alignment explanation
Indices: 17204136--17204186 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
17204126 CCGGTCCGAT
* * *
17204136 CTTAGATTGGAATGAACTTCGTATG
1 CTTAGATGGGAATAAACTCCGTATG
17204161 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGA-TGGGAATAAACTCCGTATG
17204187 TCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (25 bp):
CTTAGATGGGAATAAACTCCGTATG
Found at i:17204658 original size:896 final size:897
Alignment explanation
Indices: 17202619--17205151 Score: 3398
Period size: 896 Copynumber: 2.8 Consensus size: 897
17202609 CGAGATACAT
* * * * * ** *
17202619 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCAAATTTTTGTGTGGCAATGC
1 AAGCCGTGGATCGAAAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
** * *
17202684 CATTTTTATTACTTGTAAATTCAAACAACGGTCCCTT-A---TTCACGTGAAGTTTCTTGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * *
17202745 ACGACTCGTTTTCTATTTTTTATGATTTTTTAAACTTTTTACGGTTTGGGACTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACTGTTCGGGATTTTTTAAAATTTT
* * *
17202810 TTTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAA
196 TTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
* * *
17202875 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATT
261 AAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
**
17202940 TTAGACACTTTAATTACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
326 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * ** *
17203005 AGCTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTGGCACCCATCGCAC
391 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATTGCAC
* * * * * * *
17203070 ATCATGTGCGCACACCCTCCCCGTCCCTCGATCGTCGAAACCCCAATGCCCCCGATCAGGTTCTT
456 ATCATGTGCGCACACCC-CCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCTGGTCAGGTTCTC
* * * * *
17203135 CGACGATGCTCC-AGTGATGGTGCCCTGGTGAAGAAAAATGTGGTACCAACACATGCCCGAGCCC
520 CGGCGATGCTCCGA-CGATGGTGCCC-CGTGAAGAAAAATGTGGCACCAGCACATG-CCGAGCCC
* * * * *
17203199 AGCATGTGCTACCGCAACCCTCCGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTTTCCTTA
582 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTA
* *
17203264 GACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGGC
647 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCACTCAGCCGGC
* * * * * * * *
17203329 CAGAGGGGTGGGATGTGTAAGCCGAGGATCGGTCGAGTCCTCCTCTGCATGCTGCAGATCTTGCT
712 CAGAGGGGCGGGATGCGCAAGCTGAGGATCGATCGAGTCCCCCTCTACATGCTGCAGATCCTGCT
* ** * * * *
17203394 ATCGCAACCCTCGGTTCTGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGA
777 ACCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACT-CATATGCCTAAGCCAACCGA
* * * *
17203459 CGAAACAAGCGTGCAAGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGTGC
841 CAAAACAAGCGTG--AGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGAGATGTGC
* * * *
17203518 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATCTCTGCATGCCAATGC
1 AAGCCGTGGATCGAAAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
17203583 CATTTTTATGGCTTGGAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTGCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
17203648 ACAACTCGTTTTCTATTTTTCACGATTTTCAAAAC-TTTTAGTGGTTCGGGATTTTTTAAAATTT
131 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACT-GTTCGGGATTTTTTAAAATTT
*
17203712 TTTCGGAAGGAT-TTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT
195 TTTCGGAAGG-TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT
* ** *
17203776 AAAAACATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTTTAAAAAGTATCCCCA
259 AAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
17203841 TTTTAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
324 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
17203906 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATTGC
389 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATTGC
* *
17203971 ACATCAT-TGGCGCACACCCCCCGGCCCCCCGATCG-CTGAAACCCTAATGCTGCTGGTCAGGTT
454 ACATCATGT-GCGCACACCCCCCGGCCCCCCGATCGTC-GAAACCCCAATGCCGCTGGTCAGGTT
* *
17204034 CTCCGGCGATGCTCCGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGTTCGAGC
517 CTCCGGCGATGCTCCGACGATGGTGCCCC-GTGAAGAAAAATGTGGCACCAGCACATG-CCGAGC
* ** * *
17204099 CCAGTATGTGCTGCCATAACCCTCGGTCCGGTCCGATCTTAGA-TTGGAATGAACT-TCGTATGC
580 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCT-GTATGC
* * * *
17204162 TTAGACTGGGAATAAACTCCGTATGTCTAAGTCAACCCACGAAATAAGCGTACAGGCACTCAGCC
644 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCACTCAGCC
* * * * *
17204227 GGCCAGACGAGCGGGATGCGCAAGCTGTGGATCGATCGGGTCCCCCTCTACATGCTGCCGATCCT
709 GGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCGATCGAGTCCCCCTCTACATGCTGCAGATCCT
* * *
17204292 GTTGCCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACT-TTGATG-CTGAAGCCAA
774 GCTACCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCAT-ATGCCT-AAGCCAA
* *
17204355 CCGACAAAACAAGCG-G-GCGGGCGGGCGGGCACTACGCCGACTAGAGAGACGGGATGTGC
837 CCGACAAAACAAGCGTGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGAGATGTGC
** * * *
17204414 AAGCCGTTTATCGAAAATGTGGTAGGTGGGTTTAGGCACATTTTCATATTTCTACATGCCAATGC
1 AAGCCGTGGATCGAAAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
17204479 CATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAG
66 CATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
17204544 ATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTCGGGATTTTTTAAAATTTT
131 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACTGTTCGGGATTTTTTAAAATTTT
** * * *
17204609 TTCAAAAGGTGTTTTGGCCCCAAACTTGGTAGACATGATCGTTGTATTTTTTTTGGCATGCATAA
196 TTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
** *
17204674 AAAAATTCAATTAAAAACTCGAAGTGT-TCAAGATTTTGTGACCATTTGAAAAAATTGTCCCCAT
261 AAAAATTCAGCTAAAAACTCGAAGTGTAT-AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
17204738 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGAT-
325 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-TG
* *
17204802 TGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCC-ACTATAAGGGCCAAGTACCAGCACCCATCT
389 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAC-ATAAGGGCCAAGTACCAGCACCCAT-T
* * * * * **
17204866 -TATATCATGTGCGCACACCCCCCCGGCCCCCCGTTCATCGGAACCCCAACACCG-TCGGTCAGG
452 GCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCT-GGTCAGG
* * * *
17204929 TTCTCCGGCGATGCTTCGACGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAT
515 TTCTCCGGCGATGCTCCGACGATGGTGCCCCG-TGAAGAAAAATGTGGCACCAGCACATGCCGA-
* * *
17204994 GCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCTGTATG
578 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATG
* *
17205059 CTTAGACT-GGAATTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
643 CTTAGACTGGGAA-TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCACTCAG
17205123 CCGGCCAGAGGGGCGGGATGCGCAAGCTG
707 CCGGCCAGAGGGGCGGGATGCGCAAGCTG
17205152 GGTGTCACGG
Statistics
Matches: 1434, Mismatches: 172, Indels: 57
0.86 0.10 0.03
Matches are distributed among these distances:
895 4 0.00
896 453 0.32
897 140 0.10
898 97 0.07
899 93 0.06
900 25 0.02
901 166 0.12
902 129 0.09
903 326 0.23
904 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (897 bp):
AAGCCGTGGATCGAAAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACTGTTCGGGATTTTTTAAAATTTT
TTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
AAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATTGCAC
ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCTGGTCAGGTTCTCC
GGCGATGCTCCGACGATGGTGCCCCGTGAAGAAAAATGTGGCACCAGCACATGCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCACTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGCTGAGGATCGATCGAGTCCCCCTCTACATGCTGCAGATCCTGCTACCG
CAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCATATGCCTAAGCCAACCGACAAAA
CAAGCGTGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGAGATGTGC
Found at i:17205062 original size:26 final size:26
Alignment explanation
Indices: 17205033--17205085 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17205023 CTGGTCCTAT
*
17205033 CTTAGACTGGGAA-TGAACTCTGTATG
1 CTTAGACT-GGAATTGAACTCCGTATG
17205059 CTTAGACTGGAATTGAACTCCGTATG
1 CTTAGACTGGAATTGAACTCCGTATG
17205085 C
1 C
17205086 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAATTGAACTCCGTATG
Found at i:17212519 original size:26 final size:26
Alignment explanation
Indices: 17212490--17212542 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17212480 CCGATCCGAT
*
17212490 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17212516 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17212542 C
1 C
17212543 CCATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17213429 original size:26 final size:26
Alignment explanation
Indices: 17213380--17213432 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17213370 CCGGTCCGAT
* ***
17213380 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAAAGAACACCGTATG
17213406 CTTAGACTGGGAAAGAACACCGTATG
1 CTTAGACTGGGAAAGAACACCGTATG
17213432 C
1 C
17213433 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACACCGTATG
Found at i:17214135 original size:26 final size:26
Alignment explanation
Indices: 17214105--17214162 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
17214095 GTCCAGTCCG
17214105 TTCTTAGACTGAGAATGAACTCCGTA
1 TTCTTAGACTGAGAATGAACTCCGTA
*
17214131 TTCTTAGACTGGGAATGAACTCCGTA
1 TTCTTAGACTGAGAATGAACTCCGTA
*
17214157 TGCTTA
1 TTCTTA
17214163 AGTCAACCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (26 bp):
TTCTTAGACTGAGAATGAACTCCGTA
Found at i:17214421 original size:159 final size:159
Alignment explanation
Indices: 17214132--17214501 Score: 506
Period size: 159 Copynumber: 2.3 Consensus size: 159
17214122 AACTCCGTAT
* *
17214132 TCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGCCGCTCAG
* * * *
17214197 CCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTATCGATC
66 CCAGCCAAAGGGGCAGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTGCTACCGATC
* * *
17214262 CTGCTACCGTAACCCTCGATCTAGTCTGA
131 CTGCTACCGCAACCCTCAATCTAGTCTAA
* * * * * *
17214291 TCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCATGAAATGAGCGTGTGGCCGGTCAT
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGCCGCTCAG
* * **
17214356 CCAGCCAAAGGGGCGGGATGCGCAAGCTGGGGATCGGCCAGGTCCCCCTCTGTGTGCTACCGATC
66 CCAGCCAAAGGGGCAGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTGCTACCGATC
* *
17214421 CTGCTGCCGCAACCCTCAATCTGGTCTAA
131 CTGCTACCGCAACCCTCAATCTAGTCTAA
* * * * *
17214450 TCTTAGACTGGGAATGAAGTTCGTATGCCTAAGCCAATCGACGAAACGAGCG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
17214502 AGCAGGAAGG
Statistics
Matches: 182, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
159 182 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGCCGCTCAG
CCAGCCAAAGGGGCAGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTGCTACCGATC
CTGCTACCGCAACCCTCAATCTAGTCTAA
Found at i:17215187 original size:26 final size:26
Alignment explanation
Indices: 17215158--17215210 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17215148 CCGGTCTGAT
17215158 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17215184 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17215210 C
1 C
17215211 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17216315 original size:863 final size:861
Alignment explanation
Indices: 17214359--17216588 Score: 2988
Period size: 863 Copynumber: 2.5 Consensus size: 861
17214349 CGGTCATCCA
* * * * *
17214359 GCCAAAGGGGCGGGATGCGCAAGCTGGGGATCGGCCAGGTCCCCCTCTGTGTGCTACCGATCCTG
1 GCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTG
* * * * * *
17214424 CTGCCGCAACCCTCAATCTGGTCTAATCTTAGACTGGGAATGAAGTTCGTATGCCTAAGCCAATC
66 CTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
17214489 GACGAAACGAGCGAGCAGGAAGGCGGGCAGGCACTACGTCGGCTAGGGAGACGGGATGCGCAATC
131 GACG--A--AGCGAG--TG--GGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGC
* *
17214554 CGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACCTCTTCATATTTCTATG--TGCCAATGCCA
188 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGCATGCCAATGCCA
** *
17214617 TTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATTGCGAGAC
251 TTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGC-AGAC
** * ** *
17214682 GACTTATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTAGTTCGAGATTTTTTAAAATTTTTT
315 GACTCGTTTTCTATTTTTCA-AATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * *
17214747 TGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGACCCTTGTATTTTTTTTTGCATGCATAAAA
379 CGGAAGGAGTTTTGG-CCC---C----TAAACGTGACCCTTGTATTTTTTTTGGCATGCATAAAA
*
17214812 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCA
436 AAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCA
* * *
17214877 GACACTTTAATGGCTACTTGCAGCAAACTTGTAAAATCTCAATTGCTCTTTAAGGGGTGTGTGTT
501 GACACTTTAATGGCTACTGGCAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGTGTT
17214942 CTCGAGGTTTGATGAGGGAAAGGGGGCCTATATAAGGGCCAAGTACAAGTACCCATTGCACATCA
566 CTCGAGGTTTGATGAGGGAAAGGGGGCCTATATAAGGGCC----ACAAGT---C-TTGCACATCA
* * * *
17215007 TGTGTGCACACCCCCCTCGGCCTTTCCGATCACCGGAACCCAAATGTCGTCGGTCAGGTTCTCCG
623 TGTGCGCAAACCCCCCTCGGCCCTCCCGATCACCGGAACCCAAATGTCGTCGGTCAGGTTCTCCG
* * * **
17215072 ATGATTGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGTCG
688 ATGATCGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* * *
17215137 TAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGTGAATGAAC
753 TAACCCTCGGTCCGGTCTGATCATAGACTGGGAATGAACTCCATATGCTTAGACTATGAATGAAC
*
17215202 TCCGTATGCCTAAGTCAACCCACAAAACGAACATGCGGGCGCTCAGCCG
818 TCCGTATGCCTAAGTCAA--CAC-AAACGAACA-GCGAGCGCT-AGCCG
* * * *
17215251 GCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCTCCTCTGTGAGTTGCCGATCCTT
1 GCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTG
* *
17215316 CTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTACC
66 CTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * **
17215381 GACGAAACGAGTGGGCGGGCGGGCACTATGTCGACCAGAGAGACGGGATGCATAAGCCGTGGATC
131 GACGAAGCGAGTGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
17215446 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAAGGC
196 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAAGGC
17215511 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTT
261 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGC-AGACGACTCGTTTT
*
17215576 CTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGT
325 CTATTTTTCA-AATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
17215641 TTTGGCCCC-AAACGTGACCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTC
389 TTTGGCCCCTAAACGTGACCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTC
*
17215705 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTAC
454 AAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
17215770 TGGCAACAAACTTGTAAAAT-TCAAATGCTCTTTAAGGGGTGTGTGTTCTCGAGGTTTGATGAGG
518 TGGCAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGTGTTCTCGAGGTTTGATGAGG
17215834 GAAAGGGGGCCTAT-TAAGGG-C-CAAGT-TTGCACATCATGTGCGCATAACCCCCCTC-GCCCT
583 GAAAGGGGGCCTATATAAGGGCCACAAGTCTTGCACATCATGTGCGCA-AACCCCCCTCGGCCCT
* *
17215894 CCCGATCGCCGGAACCCCAATG-CTGTCGGTCAGGTTCTCCGACGATGCTCCAACGATCGTGCCC
647 CCCGATCACCGGAACCCAAATGTC-GTCGGTCAGGTTCT-C--CGA---T-----GATCGTGCCC
* * *
17215958 CGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGTAACCCTCGGTT
700 CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTC
* *
17216023 CTGTCTGATCATAGACTGGGAATGCACTCCATATGCTTAGACTATGAATGAACTCCGTATGCCTA
765 CGGTCTGATCATAGACTGGGAATGAACTCCATATGCTTAGACTATGAATGAACTCCGTATGCCTA
* *
17216088 AGTCAA-AC-CACGAA-A-CGAGCG-T-GCGG
830 AGTCAACACAAACGAACAGCGAGCGCTAGCCG
* * * * * * *
17216114 GCCCGAGGGGCAGGATACGCAAGCTAGGGAACAGTCGGGTCCCCCTCTATGTGCTGTCGATCCTG
1 GCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTG
* ** * * *
17216179 CTACCGTAACCCTTGGTCTGTTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACC
66 CTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*
17216244 GACGAAGCGAGTGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
131 GACGAAGCGAGTGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
17216309 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAAGGC
196 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAAGGC
17216374 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCATTGCAGACGACTCGTTTTC
261 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAGACGACTCGTTTTC
* * *
17216438 TATTTTTCACATTTTTCAAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGT
326 TATTTTTCAAATTTTT--GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
*
17216502 TTTGGCCCAAACTTGGTAGACGTGACCCTTGTA-TTTTTTTGGCATGCATAAAAAAATTCTA-CT
389 TTTGGCCC---C----TAAACGTGACCCTTGTATTTTTTTTGGCATGCATAAAAAAATT-TAGCT
17216565 AAAAACTCAAAGTGGTACAAGATT
446 AAAAACTCAAAGT-GTACAAGATT
17216589 NNNNNNNNNN
Statistics
Matches: 1209, Mismatches: 101, Indels: 79
0.87 0.07 0.06
Matches are distributed among these distances:
860 6 0.00
861 40 0.03
862 44 0.04
863 334 0.28
864 11 0.01
865 1 0.00
866 8 0.01
868 46 0.04
869 33 0.03
871 2 0.00
873 1 0.00
874 139 0.11
875 137 0.11
876 53 0.04
880 1 0.00
882 2 0.00
883 4 0.00
884 223 0.18
886 1 0.00
888 5 0.00
890 1 0.00
892 117 0.10
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (861 bp):
GCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTG
CTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAGCGAGTGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAAGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAGACGACTCGTTTTC
TATTTTTCAAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCTAAACGTGACCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTCAA
AGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGTGTTCTCGAGGTTTGATGAGGGAA
AGGGGGCCTATATAAGGGCCACAAGTCTTGCACATCATGTGCGCAAACCCCCCTCGGCCCTCCCG
ATCACCGGAACCCAAATGTCGTCGGTCAGGTTCTCCGATGATCGTGCCCCGGCGAAGAAAAATGC
GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCTGATCATAGAC
TGGGAATGAACTCCATATGCTTAGACTATGAATGAACTCCGTATGCCTAAGTCAACACAAACGAA
CAGCGAGCGCTAGCCG
Found at i:17218283 original size:26 final size:26
Alignment explanation
Indices: 17218247--17218299 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17218237 CCAGTCTGAT
17218247 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
17218273 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
17218299 C
1 C
17218300 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:17219949 original size:863 final size:869
Alignment explanation
Indices: 17217604--17221283 Score: 4227
Period size: 889 Copynumber: 4.1 Consensus size: 869
17217594 GGCAGGGAAT
* * * * *
17217604 GGGCGGGCACTACGTCGGCCAGAGAGATGGGATGGGCAAGCCGTGAATCGATAGGCCT-ATAGGT
1 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG-GTGGTAGGT
* * *
17217668 GGGTTTAGGCACATCTTCTTATTTCTCCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACA
65 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
**
17217733 ATGGT-CCTCTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAAT
130 ATGGTCCCT-TAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTC-----TTCACAAT
* * * * * *
17217797 TTTCAAAACTTTTTACGGTTC-GACATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCCGCAAAC
189 TTTTAAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
* * ** *
17217861 CTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCACAAAAACTTTCAGCTAGAAACTC----
253 TTGGTA-AAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
17217921 -GTACAAGATTTTGTGACAATTCGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGC
317 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
17217985 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGAT
382 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
17218050 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCG--
447 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGAC
* * **
17218113 -----G-TCACCAAAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGTAATGGTGCC
512 CCCCCGATCGCCGAAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCC
** * ** * * *
17218172 CCGACGAAGAAAAATACGGCACTAGCACATGCTTGAGCCCAGCATGTGCTACTACAACCCTCAGT
577 CCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
* * *
17218237 CCAGTCTGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCT
642 CCGGTCTGATCTTAGACT--G---G-A----GTA--C----A-T--GAAT--A-TCCATATGCCT
** * *
17218302 AAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCACAAGCCA
685 AAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG-CAGGCCAGAGGGGCGGGATGCACAAGCCG
* * * * * ** *
17218366 GGGATCGACCGGGTTCCACTCTGCATGCTGGCAATCCTGCTACTGCAACCCTCGATCTGGTCTGA
749 GGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCACAACCCTCGATCTGGTCCGA
* * * *
17218431 TGTTAGACTAGGAATGAACTCCGTACGACTAAGCCAACCGACGAAACGAGCGGACGGACGGAC
814 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GG-C-G--GG-C
* * * * *
17218494 GGGCGGGCACTAGGTCGACCGGAGAGACGGGATGGGCAAGCCGTGGATCGATAGGGTGGTAGATG
1 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
17218559 GGTTTAGGTACATCTTCATATTTCTGA-GTGCCAATGCCA-TTTTATGGCTTGTAAATTCGTACA
66 GGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
17218622 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCACCATT
130 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTC-----TTCACAATT
*
17218687 TTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
190 TTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* *
17218752 -G-AAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
255 GGTAA-AAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
17218815 TACGAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
319 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
17218880 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAG
384 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * * *
17218945 GGGACCAATATAGGGGCCAAGTACTAGCACCCATCGCATATCATGCGCT-CACA-CCCCCCGGCC
449 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-TGCACACCCCCCCGACC
* *
17219008 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-AGCGATGCTCCGACAATGGTGCC
513 CCCCGATCGCCGAAACCCCAATGCCATCGGTCAGGTTCTCCGA-CGATGCTCCGACAATGGTGCC
* *
17219072 CCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGT
577 CCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
* *
17219137 CCGGTCTGATCTTAGACTGG-G-A-ATGAAT-TCCATATGCCTAAGTCACCCCACAAAACAAGCG
642 CCGGTCTGATCTTAGACTGGAGTACATGAATATCCATATGCCTAAGTCAACCCACAAAACGAGCG
* * * * * * *
17219198 TGCGGGCACTTAGCAGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGTTCAGGTTCCCCTCTG
707 TGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTG
* * * *
17219263 CATGCTGCCGATCCTACTACCATAACCCTTGAT-TCAGTCCGATCTTAGACTGGGAATGAACTCC
772 CATGCTGCCGATCCTGCTACCACAACCCTCGATCT-GGTCCGATCTTAGACTGGGAATGAACTCC
** * *
17219327 ACATGCCTAAGCCAACCGACGAAATGA-GTGGGC
836 GTATGCCTAAGCCAACCGACGAAACGAGGCGGGC
* * * * * * *
17219360 GGGTGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGTCGTGGATTGATAGGGTGGTAGGCG
1 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* ** *
17219425 GGTTTAGGCACATCTTCATATATCTATGTGCCACTGCCATTTTTATGGCTTGTAAATTCATACAA
66 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17219490 TTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTC-TCACGATTTTTAAA
131 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTTCACAATTTTTAAA
* * * *
17219554 ACCTTTTGCGGTTCGGGATTTTTTACAATTTTTTCGGAAA-GAGTTTTGGCCCAAAACTTGGTAA
196 ACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAA
* *
17219618 AAGTGATCCCTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAACCTCGAAGTGTACAA
260 AAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTCGAAGTGTACAA
* *
17219683 GATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTATTGGCAGCAAAC
324 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
17219748 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
389 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
17219813 CAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGTGCACACCCCCCCGACCCCCCGA
454 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGACCCCCCGA
* * *
17219878 TCGTCGAAACCCCAATGCCATCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGA
519 TCGCCGAAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGACGA
* * * * ** *
17219942 AGAAAAATTTTGCACCACCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCTGGTCT
584 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCT
17220007 GATCTTAGACTGGGAATGAACTCCGTATGCTTATACTGGGAATGAACTCCATATGCCTAAGTCAA
649 GATCTTAGACT--G---G-A----GTA--C----A-T--GAAT--A-TCCATATGCCTAAGTCAA
* * * *
17220072 CCCACGAAAA-GAGCGTGCGGGCGCTCAACCA-GCTAGAGGGGCGAGATGCGCAAGCCGGGGATC
692 CCCAC-AAAACGAGCGTGCGGGCGCTC-AGCAGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC
** * * **
17220135 GATCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCACAACCCTCTATCTGGTAAGATCTTAG
755 GATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCACAACCCTCGATCTGGTCCGATCTTAG
* * *
17220200 ATTGGGAATGAACTCCGTATACCTAAGCCAACCGGCGAAACGAGCGGGCAGGCGGGC
820 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G-AGGCGGGC
* * * *
17220257 GGGCGGGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTG
1 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17220322 GGTTTAGGCAAATCTTCATATTTCTACATGCCAATGCCATTTTTTATGGCTTGTAAATTCATAGA
66 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACA
* *
17220387 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCATAATT
130 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTC-----TTCACAATT
* * * * * *
17220452 TTTGAAGCTTTTTGCGGTTCAGGATTTTTTTAAATTTTTTCGAAAGGATTTTTGACCCCAAACAT
190 TTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* * * *
17220517 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGT
255 GGTAAAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
17220582 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
320 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
17220647 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
385 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* **
17220712 GGGCCAATATAAGGGCCAAGTATCAGTGCCCATCGCACATCATGTGTGCACACCCCCTCCGACCC
450 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCC-CCGACCC
* * * * * * * * *
17220777 CCTCGATCGCTGGAACCCCAATGTCACCGGTCAGGTTCTTCAACGTTGCTCCGGCGATGGTGCCC
514 CC-CGATCGCCGAAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCC
** ** * *
17220842 CGGTGAAGAAAAATGTGGCACCAGCACATGCTGGAGCCCAGCATGTGTTGTCACAACCCTCGGTC
578 CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTC
* *
17220907 CAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
643 CGGTCT-GATCTTAGACT--G---G-A----GTA--C----A-T--GAAT--A-TCCATATGCCT
* * * *
17220971 AAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCACAAGTCGA
685 AAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCACAAGCCGG
* * * ** * *
17221036 GGATTGGTCGGGTCCCCCTCTGCGTGCT-CCGGATCCTGCTA-CGTAACCCTCGGTCTGGTCCCA
750 GGATCGATCGGGTCCCCCTCTGCATGCTGCC-GATCCTGCTACCACAACCCTCGATCTGGTCCGA
* *
17221099 TCTTAGACTGGGAATGAACTCTGTATGCCTATGCCAACCGACGAAACGA-GCGGGC
814 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGC
* *
17221154 GGGCGGGCATTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
17221219 GGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
66 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
17221284 AAAAAGTCAG
Statistics
Matches: 2434, Mismatches: 272, Indels: 162
0.85 0.09 0.06
Matches are distributed among these distances:
861 62 0.03
862 52 0.02
863 259 0.11
864 64 0.03
865 3 0.00
866 90 0.04
867 74 0.03
868 1 0.00
869 1 0.00
871 1 0.00
873 2 0.00
874 154 0.06
875 1 0.00
878 4 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
885 4 0.00
886 1 0.00
887 1 0.00
888 48 0.02
889 282 0.12
890 103 0.04
892 8 0.00
893 167 0.07
895 2 0.00
896 26 0.01
897 199 0.08
898 75 0.03
899 3 0.00
900 122 0.05
901 1 0.00
902 1 0.00
903 194 0.08
904 116 0.05
905 111 0.05
906 198 0.08
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (869 bp):
GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTTCACAATTTTTAAA
ACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAAA
AGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGACCCCCCGATC
GCCGAAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGACGAAG
AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGA
TCTTAGACTGGAGTACATGAATATCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGC
TCAGCAGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCC
GATCCTGCTACCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGAGGCGGGC
Found at i:17220046 original size:26 final size:26
Alignment explanation
Indices: 17220010--17220062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17220000 CTGGTCTGAT
*
17220010 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17220036 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17220062 C
1 C
17220063 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17220952 original size:26 final size:26
Alignment explanation
Indices: 17220916--17220968 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17220906 CCAGTTCGAT
17220916 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17220942 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17220968 C
1 C
17220969 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17223065 original size:26 final size:26
Alignment explanation
Indices: 17223029--17223081 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17223019 CCGATCCGAT
17223029 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
17223055 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17223081 C
1 C
17223082 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17226496 original size:26 final size:26
Alignment explanation
Indices: 17226460--17226512 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17226450 TCAGTTTGAT
*
17226460 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17226486 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17226512 C
1 C
17226513 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17229595 original size:853 final size:853
Alignment explanation
Indices: 17226486--17230011 Score: 4004
Period size: 853 Copynumber: 4.0 Consensus size: 853
17226476 ATTCCGTATG
* * *
17226486 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
* * * ** * * * * * * *
17226551 TGGCCAGATGGGTGGGATGCACAATCCAGGGATCTACCGGATCTCACTCTACGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGAGCGGGTC-C-C-C--C-T-CT-GCGA---
* * *
17226616 TGCTGCCACAACCTTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
120 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
* * * * * * *
17226681 CCAACGAAATGAGCGGGCGGGTGAGTGGGCGTGTACTACACCGACAAGAGAGGCGGGATGCGCAA
185 CCGACGAAATGAGCGGGCGGG-CA---GGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
*
17226746 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCA
246 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
17226811 TTTTTATGGTTTGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGC
311 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
17226876 GACTTGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
376 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
17226941 TGGGAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
441 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17227006 AAATTCAG--ATAAA----AAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
506 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
*
17227065 CAGAGACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
571 -AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17227130 GTTCTCAAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAACTACCAGCACCCGTCGCACA
635 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * * *
17227194 TCATGTGCGTACA-CCCCCC-AACCCCTCCGATCGTCGAAACCCCAATGCCGCTAGTCAGGTTCT
700 TCATGTGCGCACAGCCCCCCTGGCCCC-CCGATCATCGGAACCCCAAT---GCTAG-CTGG---T
* ** * *
17227257 CCGGCAATACTTTGGCGATGCTCCGATGATGGTGCCCTGACGAAGATAAATGCGGCACCAGCACA
757 ----C-A-A-------G-TTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * *
17227322 TGCTTGAGCCCAGCATGTGTTGCCGCAACCTTTGGTCCGATCTGATCTTAGACTGAGAATGAACT
808 TGCTCGAGCCCAGCATGTGCTGCCACAA-C------CC--TC-GGTC-----C-------G-A-T
*
17227387 CCATAT
849 CC-GAT
* * *
17227393 ACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGTGTTCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTCAG
** * ** *
17227458 CCTACCAGAGGGGCGGGATGCGTAAGCCAGGGAT-TTGCTGGGTCCCCCTCTGCGTGTTGCTGAT
65 CCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGAGC-GGGTCCCCCTCTGC--GATGCTG--
* * * * *
17227522 CCTGTTGCTGTAACCCTCAGTCTGGTCCGGTCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
125 CC----GC---AACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCC
* * * * ** *
17227587 AACCGATGAAACGAGCAGGC--G--GTCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGT
183 AACCGACGAAATGAGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGC
* * *
17227648 CGTGGATCGATAAGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
248 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
17227713 TTTATGGCTTGTAAATTCATACAATTGTCCCTTAGGCCTCCATGTGAAGTTTCATGGCAAGACGA
313 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
17227778 CTCGTTTTCTATTTTTCAC-------G--A-TTTTTACGGTTCAGGATTTTTTAAAATTCTTTCG
378 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
17227833 AAAGGAGGTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATACACAAAAAA
443 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
17227898 ATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTAATCATTTGAAAAAAGTGTCCCCATTTTAG
508 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
*
17227963 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTT
573 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
17228028 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCATGTACCAGCACCCATCGCACATTA
638 CTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
17228093 TGT-CTGCATAGCCCCCCTGGCCCTCCCGATCATCGGAACCCCAAT-ATCGCTGGTCAAGTTGTC
703 TGTGC-GCACAGCCCCCCTGGCCC-CCCGATCATCGGAACCCCAATGCTAGCTGGTCAAGTTCTC
** ** *
17228156 CGGCGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCAGATGCTCGAGCCCAGCATGTGCTGC
766 CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGC
* *
17228221 CACAACACTCGGTCCTATCCGAT
831 CACAACCCTCGGTCCGATCCGAT
* * ** * *
17228244 CTTGGACTGGAAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
* *
17228309 CGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGACCGGGTCCCCCTCTGCATGCTATCGATCT
66 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGAGCGGGT-CCCC-CT-C-TG----CGA---
* * * *
17228374 TGCTGCCGCAACCCTCGGTCTGGTCT-ATTCATAGACTGGGAATGAACTCCGTATGCCTAAGCCA
120 TGCTGCCGCAACCCTCGGTCCGGTCTGA-TCTTAGACTAGGAATGAACTCCATATGCCTAAGCCA
* *
17228438 ACCGACGAAATGAGTTGGCGGGCGGGCAGGCGGGCACTACACCGGCCAAAGAGACAGGATGCGCA
184 ACCGACGAAATGA----GCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCA
* * * * * *
17228503 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTCTACATGTCAGTGCA
245 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
17228568 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGA
310 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** **
17228633 CAACTCGTTTTCTAGTTTTCATGATTTTTGAAACTTTTTACAATTCGGGATTTTTTAAAATTTTT
375 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
17228698 TTGGAAGGAGTTTTGGCCCCAAACATGGTAGATGAGATCCTTGTATTTTTGTTGGCATGTACCAA
440 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
17228763 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
505 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
17228828 TAGGCACTTTAATGGCTACTGGAAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
570 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17228893 GTTCTCGAGGTTTGATAAGGGATAAGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCACACA
635 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
17228958 TTATGTGTGCACAGCCCCCACTGGCTCCCCCGAACGTCGGAACCCTAATGCT-GCCGGTCAAGTT
700 TCATGTGCGCACAGCCCCC-CTGGC-CCCCCGATCATCGGAACCCCAATGCTAGCTGGTCAAGTT
*
17229022 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGC
763 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGC
* *
17229087 TGCCACAACCCTCAGTCCGATCGGAT
828 TGCCACAACCCTCGGTCCGATCCGAT
* * * * *
17229113 GTTAGACTGGGAATGAACTCCGTATGCCAAAGACAACCCACGAAATGAGCGTTCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
** * * *
17229178 CGGCCAGAGGGGTTGGATGCGCAAGCCGGGGATCGGGCAGGTCCCCCTCTGC-ATGCTGCCGCAA
66 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGAGCGGGTCCCCCTCTGCGATGCTGCCGCAA
*
17229242 CCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
131 CCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATG
**
17229307 AGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
196 AGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
* * *
17229372 TGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGC-TAGCCAATGCCATTTTTATGACTTGT
261 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT-GCCAATGCCATTTTTATGGCTTGT
17229436 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
325 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *
17229501 TTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTGTTTAAAATTTTTTCGGAAGGAGTTTTG
390 TTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * *
17229566 GCCCCAAACTTCGTAGATGTGATCCTTGTATTTTTGTTGGCTTGTACAAAAAAATTCAGCTAAAA
455 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
** *
17229631 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAAACTTTAATGG
520 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
*
17229696 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
585 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
** * *
17229761 TGAGGGATTGGGGGCCAGTATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACA-C
650 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGC
* * * * *
17229825 CCCCCCGACCCCCCGATCATCGGGACCCCAATGC-CGCTGGTCAGGTTCTCCGATGATGCTCCGA
715 CCCCCTGGCCCCCCGATCATCGGAACCCCAATGCTAGCTGGTCAAGTTCTCC------G----G-
* *** * * *
17229889 CGATGGTGCCTCGGTAAAGAAAAATGCGACACCAGCACATGGC-CGAGGCCAGCATGTGCTGCCG
769 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT-GCTCGAGCCCAGCATGTGCTGCCA
* *
17229953 TAACCCTCGGTCCGGTCCGAT
833 CAACCCTCGGTCCGATCCGAT
*
17229974 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
17230012 GATGAAACAA
Statistics
Matches: 2263, Mismatches: 282, Indels: 193
0.83 0.10 0.07
Matches are distributed among these distances:
850 184 0.08
851 10 0.00
852 11 0.00
853 474 0.21
854 7 0.00
856 3 0.00
857 74 0.03
858 170 0.08
859 5 0.00
860 2 0.00
861 107 0.05
862 2 0.00
865 3 0.00
866 4 0.00
867 5 0.00
868 285 0.13
869 204 0.09
870 3 0.00
875 1 0.00
876 61 0.03
877 1 0.00
884 1 0.00
885 1 0.00
886 1 0.00
890 95 0.04
891 1 0.00
892 4 0.00
893 4 0.00
894 2 0.00
895 85 0.04
896 87 0.04
897 6 0.00
898 21 0.01
899 6 0.00
900 169 0.07
901 4 0.00
902 1 0.00
903 1 0.00
905 2 0.00
906 2 0.00
907 3 0.00
908 151 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (853 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGAGCGGGTCCCCCTCTGCGATGCTGCCGCAA
CCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATG
AGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCC
CCCCTGGCCCCCCGATCATCGGAACCCCAATGCTAGCTGGTCAAGTTCTCCGGCGATGGTGCCCC
GACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCC
GATCCGAT
Found at i:17230714 original size:26 final size:26
Alignment explanation
Indices: 17230685--17230737 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17230675 CCGGTCCGAT
*
17230685 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
** *
17230711 CTTAGACTAGGAATTAACTCTGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
17230737 C
1 C
17230738 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:17236562 original size:705 final size:705
Alignment explanation
Indices: 17234139--17239105 Score: 7705
Period size: 705 Copynumber: 7.1 Consensus size: 705
17234129 CATGCTGCCA
* * * *
17234139 TAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAA
1 TAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAC
* ** * * * * **
17234204 ATGAGCGGACGGCCGGGCGGACGGGAACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCTGTGG
66 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGTAAGCCATGG
* * * *
17234268 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTATGTGCCAATTCCATTTATAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGTACAT-TTCGTATTTCTGTGTGCCAATGCCATTTTTAT
* * **
17234333 GGCTTGTAAATTCATACAATGGT-CCTTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACGACGAG
194 GGCTTGTAAATTCATACAATGGTAAC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * ** * * * ** * * *
17234397 TTTTATATTTTTCACGATTTTTGAAACTTTTTACAGTTTAGGA-TTTTTTAACGTTTTTCCGCAA
258 TTTTCTATTTTTCACAATTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAA-ATTTTTTCGAAA
* * *
17234461 CGAGTTTTGGCCCCAAACTTGG-TGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
322 GGGGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
17234525 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCGCCATTTCAGACA
387 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCGCCATTTCAGACA
17234590 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
452 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
17234655 GAGGTTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
517 GAGGTTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAG----CA---C-C--CA--T
*
17234720 GCGCACACCCCCCCCCCGGCCCTTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGAC
570 -CGCACA--CCCCCCCAGGCCCTTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGAC
17234785 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGGCCAGCAT
632 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGGCCAGCAT
17234850 GTGCTACCG
697 GTGCTACCG
* * * *
17234859 TAACCCTCAGTCCAGTCCAATTTTAGACTGGGAATGAATTTCGTATGCCTAAGCCAACCGACGAC
1 TAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAC
* *
17234924 ACGAGCGGGTGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGA
66 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCATGGA
* *
17234989 TCGATAAGGTGGTAGGTGGGTTTAGGTACATTTCGTATTTCTATGTGCCAATGCCATTTTTATGG
131 TCGATAGGGTGGTAGGTGGGTTTAGGTACATTTCGTATTTCTGTGTGCCAATGCCATTTTTATGG
17235054 CTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
17235119 TCTATTTTTCACAGTTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAAATTTTTTTGAAAGGGG
261 TCTATTTTTCACAATTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAAATTTTTTCGAAAGGGG
*
17235184 TTTTGGCCCCAAACTTTGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
326 TTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
17235249 TAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAATGTCGCCATTTTAGACACTTT
391 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCGCCATTTCAGACACTTT
17235314 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
456 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
17235379 TTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACACCCCCCCAGG
521 TTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACACCCCCCCAGG
* *
17235444 CACTTCGATCGTCGGAACCCCAATGCTTTCGGTCAGG---T-------T-CTCCGACGATGGTGC
586 CCCTTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
17235498 CCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGGCCAGCATGTGCTACCG
651 CCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGGCCAGCATGTGCTACCG
17235553 TAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAC
1 TAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAC
17235618 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCATGGA
66 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCATGGA
*
17235683 TCGATCGGGTGGTAGGTGGGTTTAGGTACATTTCGTATTTCTGTGTGCCAATGCCATTTTTATGG
131 TCGATAGGGTGGTAGGTGGGTTTAGGTACATTTCGTATTTCTGTGTGCCAATGCCATTTTTATGG
17235748 CTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
17235813 TCTATTTTTCACAGTTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAAATTTTTTCGGAAGGGG
261 TCTATTTTTCACAATTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAAATTTTTTCGAAAGGGG
* *
17235878 TTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGC
326 TTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
17235943 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCGCCATTTCAGACACTTT
391 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCGCCATTTCAGACACTTT
17236008 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
456 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
17236073 TTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCACACACCCCCCCTGG
521 TTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACACCCCCCCAGG
*
17236138 CCCTTCGATCGTCGGAACCCCAATTCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
586 CCCTTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
17236203 CCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGGCCAGCATGTGCTACCG
651 CCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGGCCAGCATGTGCTACCG
17236258 TAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAC
1 TAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAC
17236323 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCATGGA
66 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCATGGA
*
17236388 TCGATAGGGTGGTAGGTGGGTTTAGGTACATTTTGTATTTCTGTGTGCCAATGCCATTTTTATGG
131 TCGATAGGGTGGTAGGTGGGTTTAGGTACATTTCGTATTTCTGTGTGCCAATGCCATTTTTATGG
17236453 CTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
17236518 TCTATTTTTCACAATTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAAATTTTTTCGAAAGGGG
261 TCTATTTTTCACAATTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAAATTTTTTCGAAAGGGG
17236583 TTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
326 TTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
17236648 TAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAATGTCGCCATTTTAGACACTTT
391 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCGCCATTTCAGACACTTT
17236713 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
456 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
17236778 TTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACACCCCCCCAGG
521 TTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACACCCCCCCAGG
*
17236843 CACTTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
586 CCCTTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
17236908 CCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGGCCAGCATGTGCTACCG
651 CCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGGCCAGCATGTGCTACCG
* * * *
17236963 TAACCCTCAGTCCAGTCCAATTTTAGACTGGGAATGAATTTCGTATGCCTAAGCCAACCGACGAC
1 TAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAC
*
17237028 ACGAGCGGGTGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCATGGA
66 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCATGGA
*
17237093 TCGATCGGGTGGTAGGTGGGTTTAGGTACATTTCGTATTTCTGTGTGCCAATGCCATTTTTATGG
131 TCGATAGGGTGGTAGGTGGGTTTAGGTACATTTCGTATTTCTGTGTGCCAATGCCATTTTTAT-G
17237158 GCTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
17237223 TTCTATTTTTCACAGTTTTCAAAACATTTTCCTGTTCGGGATTTTTTAAAATTTTTT-GAAAGGG
260 TTCTATTTTTCACAATTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAAATTTTTTCGAAAGGG
17237287 GTTTTGGCCCCAAACTTGGCAGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
325 GTTTTGGCCCCAAACTTGGCA-GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
17237352 -CTAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAAATGTCGGCATTT-AGACAC
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAATGTCGCCATTTCAGACAC
17237415 -TTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
17237477 AGTTTTGATGAGGGATTGGGGGCCAGTATAAGGG-CAAGTACCAGCACCCATCGCACACCCCCCC
518 AGGTTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACACCCCCCC
*
17237541 AGGCACTTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
583 AGGCCCTTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
*
17237606 TGCGCCCGACAGAAGGAAAAAATACGACACCCAG-AGATG-CCGAGGCCAGCATGTATG-TAGCC
648 TGC-CCCGAC-GAA-G-AAAAATACGACA-CCAGCACATGCCCGAGGCCAGCATG--TGCTA-CC
17237668 G
705 G
*
17237669 TAACCCTCAGT-CGGTCCTATCTATAGACT-GG-ATGAA-TCGCGTATGCC-AAGCCAA-CGAGC
1 TAACCCTCAGTCCGGTCCGATCT-TAGACTGGGAATGAATTC-CGTATGCCTAAGCCAACCGA-C
* ** * * * *
17237728 GTC-CGAGCGGGTGGGC-GGC--GTAGGCCCTAAGTCGGCCAGAG-GA-AGGAT-CTTAA-CCAA
63 GACACGAGCGGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCC-A
17237785 TGGATCGATAGAGGT-GTAGGT-GG-TTAGGTA-ATTTCGTTATTTCTGTGTG-CAATGCCATTT
127 TGGATCGATAG-GGTGGTAGGTGGGTTTAGGTACATTTCG-TATTTCTGTGTGCCAATGCCATTT
*
17237845 TTATGGACTTGTAAAATT-AAACAATGGTAACGTTAAGCCTTCACGGTG-AG-TT-ATGTGCAAG
190 TTATGG-CTTGT-AAATTCATACAATGGTAAC-TTAAGCCTTCAC-GTGAAGTTTCATG-GCAAG
* *
17237906 ACGACTCAG--TT-TA-TTTTCAC-A-GTTCAAAA-ATTTTCCTGTTCGGGA-TTTTTT-AATAT
250 ACGACTC-GTTTTCTATTTTTCACAATTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAAATTT
*
17237962 TTTCG-AA--GGTTTT-GCCCC-AACTTGGCAGAC-T-ATCCATTGTATTTTTATTTGGCATG--
314 TTTCGAAAGGGGTTTTGGCCCCAAACTTGGCAGACGTGATCC-TTGTATTTTT-GTTGGCATGCA
* *
17238018 C-ATAAAATTCAGC---AAACTCGAAGATGTACAA-ATGTTGTGACCA-TTGAAAAAAATGTCGC
377 CAAAAAAATTCAGCTAAAAACTCGAAG-TGTACAAGATTTTGTGACCATTTGAAAAAAATGTCGC
17238077 CATTTCAGACACTTTAATGGCTACTTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
441 CATTTCAGACACTTTAATGGCTAC-TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
17238142 GTGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCAT
505 GTGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCAT
* *
17238207 CGCAC-CCCCCCCTGGCCCTTCGATCGTCGGAACCCCAATTCTGTCGGTCAGGTTCTCCGACGAT
570 CGCACACCCCCCCAGGCCCTTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGAT
*
17238271 GCTCCGACGATGGTGCCCGGACGAAGAAAAATACGACA-CAGCACATGCCCGAGGCCAGCATGTG
635 GCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGGCCAGCATGTG
17238335 CTACCG
700 CTACCG
17238341 TAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAC
1 TAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAC
*
17238406 ACGAGCGGGTGGGCGGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGG
66 ACGAGCGGGTGGGC-GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCATGG
17238471 ATCGATAGGGTGGTAGGTGGGTTTTAGGTACATTT-GTATTTCTGTGTGCCAATGCCATTTTTTA
130 ATCGATAGGGTGGTAGGTGGG-TTTAGGTACATTTCGTATTTCTGTGTGCCAATGCCA-TTTTTA
17238535 TGGCTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
193 TGGCTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
17238600 TTTTCTATTTTTCACAATTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAAATTTTTTCGAAAG
258 TTTTCTATTTTTCACAATTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAAATTTTTTCGAAAG
17238665 GGGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
323 GGGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
17238730 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCGCCATTTCAGACAC
* *
17238795 TTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * *
17238860 AGGTTTCATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCAACCATCGCACATCACGTG
518 AGGTTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCG-----CA----
** * * * * * *
17238925 CGTACACCCCCCAGGCCCCCCCCGATTGCCGGAACCCTAATG-TCGTCGGTTAGGTTCTTCGGCG
574 C--AC-CCCCCCAGG--CCCTTCGATCGTCGGAACCCCAATGCT-GTCGGTCAGGTTCTCCGACG
* * *
17238989 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCTG-CACCAACACATGCCCGAGCCCAGCAT
633 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAC-GACACCAGCACATGCCCGAGGCCAGCAT
* *
17239053 GTGCTGCTG
697 GTGCTACCG
* * * *
17239062 CAACCCTC-GATCCGGCCCGATCTTAGACTGGGAATTAACTCCGT
1 TAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAATTCCGT
17239106 TTGCTTAGAC
Statistics
Matches: 3959, Mismatches: 167, Indels: 241
0.91 0.04 0.06
Matches are distributed among these distances:
672 25 0.01
673 35 0.01
674 48 0.01
675 45 0.01
676 26 0.01
677 48 0.01
678 130 0.03
679 33 0.01
680 29 0.01
681 11 0.00
682 12 0.00
683 27 0.01
684 7 0.00
685 41 0.01
686 53 0.01
687 34 0.01
688 9 0.00
689 7 0.00
690 8 0.00
691 9 0.00
692 23 0.01
693 58 0.01
694 719 0.18
695 10 0.00
696 21 0.01
697 14 0.00
698 7 0.00
699 38 0.01
700 11 0.00
701 106 0.03
702 82 0.02
703 48 0.01
704 48 0.01
705 1213 0.31
706 244 0.06
707 6 0.00
708 1 0.00
710 4 0.00
712 1 0.00
713 1 0.00
714 1 0.00
716 2 0.00
717 1 0.00
718 8 0.00
719 149 0.04
720 438 0.11
721 68 0.02
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (705 bp):
TAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAC
ACGAGCGGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCATGGA
TCGATAGGGTGGTAGGTGGGTTTAGGTACATTTCGTATTTCTGTGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACAATTTTCAAAACATTTTCCTGTTCGGGATTTTTTTAAATTTTTTCGAAAGGGG
TTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCGCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATTGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACACCCCCCCAGG
CCCTTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
CCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGGCCAGCATGTGCTACCG
Found at i:17239930 original size:26 final size:26
Alignment explanation
Indices: 17239891--17239941 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17239881 CTCTGGCGAT
*
17239891 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
*
17239917 CTTAGACTACGAATGAACTCTGTAT
1 CTTAGACTACGAATGAACTCCGTAT
17239942 TCCTAATTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:17240801 original size:26 final size:26
Alignment explanation
Indices: 17240772--17240824 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17240762 TCGGTTCGAT
* *
17240772 CTTAGTCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17240798 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17240824 C
1 C
17240825 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17242292 original size:26 final size:26
Alignment explanation
Indices: 17242254--17242306 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17242244 CCAGTCCAAT
*
17242254 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17242280 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17242306 C
1 C
17242307 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17242707 original size:26 final size:26
Alignment explanation
Indices: 17242673--17242724 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17242663 TTTTCTATTT
* *
17242673 TTCATGATTTTTGAAACTTTTTTCGG
1 TTCAGGATTTTTGAAAATTTTTTCGG
*
17242699 TTCAGGATTTTTTAAAATTTTTTCGG
1 TTCAGGATTTTTGAAAATTTTTTCGG
17242725 AAGGAGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (26 bp):
TTCAGGATTTTTGAAAATTTTTTCGG
Found at i:17243178 original size:26 final size:26
Alignment explanation
Indices: 17243142--17243194 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17243132 CTGGTTTGAT
17243142 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17243168 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17243194 C
1 C
17243195 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17244081 original size:26 final size:26
Alignment explanation
Indices: 17244043--17244095 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17244033 CCAGTCCAAT
*
17244043 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17244069 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17244095 C
1 C
17244096 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17244577 original size:894 final size:893
Alignment explanation
Indices: 17241591--17252623 Score: 9730
Period size: 889 Copynumber: 12.3 Consensus size: 893
17241581 TGAAATGGGC
** *
17241591 AGGCGGGCGGGCACTACGCC-AGCCAGAGAGACGGGATATGCAAGCCGTGGATCGATAGGGTGAT
1 AGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* ** *
17241655 TGGTGGGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTATGGCTTGTAAATTCA
65 AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
17241720 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCAC
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * * * *
17241785 GATTTTTAAAACTTTTTAAGGCTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGACCCCAA
195 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* *
17241850 ACTTGGTAGACATTATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
17241915 GTGTATAAGATATTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
17241980 CAGCAAACTTGTAAAATGTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGATTGATGAGGGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * **
17242045 TACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACAACCACTCTT
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACC-CCCCC
* ** *
17242110 GGCCCCCCCGATCGCCAAAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATTG
519 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGG
* * * *
17242175 TGCCCCGGTGAAGAAAAATGCGGCACTAGTAAATGCCCGAGCCCAGCATGTGCTGCAGCAACCCT
584 TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCT
* *
17242240 CGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTAT
649 CGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
17242305 GCCTAAGTTAACCCACGAAACGAGCATACGGGTGCTCAGTCGGCCAAAGGGGCGGGATGCGCAAG
714 GCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * *
17242370 CCGGGGATTGGTCGAGTCCCCTTCTGCATGCTACTGATCCTACTATCACAACCCTCAGTCCT-GT
779 CCGGGGATCGATCGGGTCCCCTTCTGCGTGCTACTGATCCTGCTATCACAACCCTC-GT-CTGGT
* *
17242434 CTGAACTTAGACTGGGAATGAACACCGTATGCCTAAGCCAACTGACGAAACG
842 CTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
17242486 A-GCGGGTGGGCACTACGCCGACCAGATAGATGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 AGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
17242550 GGTGGCTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTCTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
17242615 ACAATGGTCCCTTAAGCCTTCTCGTGAAGTTT-ACGGCAAGATGACCCGTTTTCTATTTTTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *
17242679 ATTTTTGAAACTTTTTTCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
17242744 CATGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTTGAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
17242809 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
17242874 AGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGGTCTGACTTCTCGAGGTTTGATGTGGGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
** * * * * *
17242938 AGGGGGCCAATATAAGGGCTGAGTACCAGCACCAATCGCACATCATGTCCGCA-TA-GCCCTC-G
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCCGG
* * ** * **
17243000 ACCCCGCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG
521 CCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG
* * * * * * *
17243065 CCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAACATTTTCTGTC-GAAACCTTC
586 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CAGCAACCCTC
** **
17243129 GGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
650 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
17243194 CCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGTGGGATGCGCAAGC
715 CCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * ** * * * * * * *
17243259 TGGGTATCGATCGGGTCCCCTTCTATGTGCTACCGATCTTGCTGTCGCAACCTTCGGTCCGATCT
780 CGGGGATCGATCGGGTCCCCTTCTGCGTGCTACTGATCCTGCTATCACAACCCTC-GTCTGGTCT
*
17243324 -AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACG
844 GAA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* *
17243374 AACGGGCGGGCGACCGAGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAG
1 -A--GGCGGGCG---G-GCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
17243439 GGTGGCAGGT-GGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTA
59 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTA
*
17243503 AATTCATACAATGGTCCCTT-AGGCTTGCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
124 AATTCATACAATGGTCCCTTAAGCCTT-CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
17243567 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTT
188 TTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
*
17243632 ACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
253 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
17243697 ACTCGAAGTGTATAAGATATTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGG
318 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
17243762 CTACTGGCAGCAAACTTGTAAAATGTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGATTGA
383 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
17243827 TGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACAAC
448 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAAC
* ** * **
17243892 CACTCTTGGCCCCCCCGATCGCCAAAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCG
513 C-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCG
* * * * *
17243957 ACGATTGTGCCCCGGTGAAGAAAAATGCGGCACTAGTAAATGCCCGAGCCCAGCATGTGCTGCAG
577 ACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAG
* *
17244022 CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC
642 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
17244087 TCCGTATGCCTAAGTTAACCCACGAAACGAGCATACGGGTGCTCAGTCGGCCAAAGGGGCGGGAT
707 TCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * *
17244152 GCGCAAGCCGGGGATTGGTCGAGTCCCCTTCTGCATGCTACTGATCCTACTATCACAACCCTCAG
772 GCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTACTGATCCTGCTATCACAACCCTC-G
* *
17244217 TCCT-GTCTGAACTTAGACTGGGAATGAACACCGTATGCCTAAGCCAACTGACGAAACG
836 T-CTGGTCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
17244275 A-GCGGGTGGGCACTACGCCGACCAGATAGATGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 AGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
17244339 GGTGGCTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTCTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
17244404 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAGG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
*
17244469 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
17244534 CTTGGTAGAAC-TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCTAA
261 CTTGGTAG-ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
17244598 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAAACACTTTAATGGCTA-TAG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-G
*
17244662 GCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
389 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
17244727 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCCC
454 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAAC-CCCCC
* ** * * *
17244792 CGGCCCCCCCGATCGTTGGAACCCCAATGCTACCGGTTAAGTTCT-C--CGA---T-----GATG
518 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATG
** * * * * * * *
17244846 GTGCCCCGGTAAAGAAAAATACGACATCAGCACATGCCCGAGCCCAACATTTGCTACCGCAACCC
583 GTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCC
* * * *
17244911 TCGATCCAATCCGATCTTAGACTTGGAA-GAACTCCGTATGCTTAGACTGGGAACGAACT-CGTA
648 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* ** * * * * *
17244974 TGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCACCCAGCTACAGGGGCGGGATGCACAA
713 TGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * ** * ** * * *
17245039 ACCGGGGATCGATCGAGTCCCTTTCTACGTGCTGTTGATCCTGCT-GCTGTAACCCTTGGTCCGA
778 GCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTACTGATCCTGCTATC-ACAACCC-TCGTCTGG
*
17245103 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGG
841 TCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-C--G
* * *
17245162 CAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGT
1 -AGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * **
17245227 AGGTGGGTTTAGGTACATCCTCAGATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
65 AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
17245292 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCAT
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* ** * * *
17245357 GATTTTTGAAATTTTTTGGGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGGGTGTTGGCCCCAA
195 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
17245422 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGAACAAAAAAATTCAGCTAAAAACTCAAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* ** *
17245487 GTGTACAAGATTTTGTGACAATTTGAAAAAAGCATCCCAATTTCAGACACTTTAATGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * **
17245552 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATAATTGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
17245617 TAGGGGGCCAATATAATGGCCAAGCACCAGCACCCATCACACATGATGTGCGCACAACCCCCCTC
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCC-C
* ** * * *
17245682 GGCCCCCCCGATCGTCGAAACCCCAATGCTACCGGTCAAGTTCTCTGGCGATGCTCCGACGATGG
519 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGG
* * * * * *
17245747 TGCCCCGGTGATGAAAAATGTGGCACCAGCACATGCCTGAGCCCCGTATGTGCTGCCA-CAA-CC
584 TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CAGCAACCC
17245810 -C--T-C-G---G-TC-----C--------AA-TCCG-AT-CTTAGACTGGGAATGAACTCCGTA
648 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * **
17245850 AGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGGGGAGGGATGTACAA
713 TGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
** * **
17245915 GCC-GGGATCGATCGGGTCCCCTTCTATGTGCTGCCAATCCTGCTATCGA-AACCCTCGATCTGG
778 GCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTACTGATCCTGCTATC-ACAACCCTCG-TCTGG
* *
17245978 TCT-AATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AA--
841 TCTGAA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
*** * * * *
17246028 A--C-GTTAGTCA-T-CAG-C--CCAG-G-GATGGGATGCGCAAGCCGAGGA-CGATCGGGGCTG
1 AGGCGGGCGGGCACTAC-GCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT-AGGG-TG
* * ** * * * * * * * * * *****
17246082 CCTCATGTGTAATCCTACGCA-ACTCGTCGGATCGGACTCTCCGTATGCCTAGGAACTGACGGCG
63 -GT-AGGTG-GGT-TTAGGCACA-TCTTC--AT---A-TTTCTGTGTGCCAATG--C-CATTTTT
** *** * * * ** * *
17246146 ATGGCGACGTCGTTTGCAAAGAGATGGGATGCGC--AAGCCGTGGATCGAT-AGGGTGGT-AGGT
114 ATGGC-TTGTAAATT-CATACA-AT-GG-T-CCCTTAAGCC-TTCA-CG-TGA-AGT-TTCA--T
*** * * *** **
17246207 GGGTTTTGA--ATCTTCATATTCTGCTGGTTGCCCAATGCCATTTTT-ATGGCTTGTAATCATAC
166 -GG-CAAGACGA-C-TCGT-TT-T-CT-ATTTTTC-ATG--ATTTTTGA-AACTT-T--T--TAC
** * *** *** ** ** * *** * ** *
17246269 -AAT-GCG-TCCCTT--AAGCCTCACGGCTGAAGTTTCAT-GCAAGATGACTCGTTTTCTATTTT
214 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT--TGGCCCCA--A-AC--TTGGTA---G
* ** * * *** *** * ** * *
17246328 TCAG-GATTTTTTGAAACTTTTTACGGTTCCGG-ATTTTTTCAAAATTTTTTCAGGTAAGGAGTT
269 AC-GTGA-TCCTTG-TA-TTTTT----TT-TGGCA--TGCACAAAA-AAATTCAGCTAAAAACTC
*** ** * * * **** * ** ** * * *
17246391 TTTG-GCCCCAA-ACTTTGGTAGAACTGATCCTTG-TATTTTTTTCGGCATGCCACAAAAAATTT
322 GAAGTG-TACAAGA-TTTTGT-G-AC-CAT--TTGAAAAAAGTGTCCCCAT--TTCAGACACTTT
**** * * * *** **** * *
17246453 AA--GCTAAAAAC-TCTAA-GTGTACAAGAT-T-TTGTGAC-CATTTGAAAAAAGTGTCCACATT
378 AATGGCTACTGGCAGCAAACCTGTA-AA-ATCTCAAATG-CTC-TTT-AAGGGGGTGT-GA-GTT
* ** * ** * * **
17246511 -TCAAACACTTTAATG-GCTATAGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
436 CTC-GA-GGTTTGATGAGGGATAGG--GG--GCC-----AATAT-AAGGGC-C---AA------G
* *** * * * *
17246574 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC-CAAT-ATATGGGC-CAAGTACCAGCACCCAT
479 T-A---C-C-A-----G--CACCCAT----CGCAC-ATCATGTGCGCAC-A--ACC--C-CCC-C
* * *
17246636 CGCACATCATGTGCGCACACCCCCTCCCCCGGCCCTCCTGATCATTGGAACCCCAATGTCG-TCG
519 GG--------------------CC-CCCCC-G--AT-C-G-TC---GGAACCCCAATGCCGCT-G
** * *
17246700 GTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCTGCACCAGCACAT
553 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * * * ** ***
17246765 GCCTGAGCCTAGTATGTGCTGCCA-CAACCCTCAGTCCAGTTTGATCTTAGACTAAAAATGAACT
618 GCCCGAGCCCAGCATGTGCTG-CAGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACT
* *
17246829 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCATGCGGGC
682 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGC
* * * * * ** * ** *
17246894 GCTCAACCGGCCAGAGGGGTGGAATGCGCAAACCAGGGATCGGCCGGATCTTGC-TCTGTGTGCT
747 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC-CCCTTCTGCGTGCT
* * * * * *
17246958 -GTCGATCCTGCTACCGCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCTGTATGC
811 ACT-GATCCTGCTATCACAACCCTC-GTCTGGTCTGAACTTAGACTGGGAATGAACTCCGTATGC
*
17247022 CTAAGCCAACCGATGAAACG
874 CTAAGCCAACCGACGAAACG
* * *
17247042 AGCGGGCGGGCGGGCAATACGTC-AGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
1 A---GGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
17247106 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
62 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
17247171 TCGTATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTT
127 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * *
17247236 CATGATTTTTGAAACTTTTTTGCAGTTCGGGATTTTGTAAAATTTTTTCGGAAGCAGTTTTGACC
192 CATGATTTTTGAAAC-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * * *
17247301 CAAAACTTGGAAGACATGATCCGTGTATTTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAAC
256 CCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAAC
17247366 TC-AAGTGTACAAGATTTTGTGA-CATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
320 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
17247428 ACTGGTAGCAAACCTCTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
385 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
17247493 AGGGATAGGGGGCCAATATAA-GGCCAAAGTACCAGCACCCATCGCACATCATGTGCACAC-A-C
450 AGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATCATGTGCGCACAACC
* * * ** * *
17247555 CCCCCGG-CCCCCCGATCGTAGGAAACCCAATGCCGCCGGTCAGGTTCTCCGATGATACTCCGGC
514 CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGAC
* *
17247619 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCTCAGCATGTGCT------
579 GATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCA
* ** *
17247678 A---TC-GT--AATCC--TC-T-G--T----CCG-A-TCCG-AT-CTAAGACTGGGAATGAACTC
644 ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * * *
17247723 CGTATGCCTAAGTCAACCCACCAAACGAGCGTACGAGCGCATTCAACCGGCTAGGGGGGCGGGAT
709 CGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGC--TCAGCCGGCCAGAGGGGCGGGAT
* * * * * * *
17247788 GCGTAAGCTGGGGATCGATCGGGTCCCCATCTGCTTCCT-GTCGATCCTGCTA-CGCAACCCTCG
772 GCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTACT-GATCCTGCTATCACAACCCTCG
** * *
17247851 ATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACG
836 -TCTGGTCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * *
17247910 AGCGGCGGGCGGGCGGGCGGGCGGGTACTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGA
1 A----------GGCGGGCGGGC----ACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
17247975 TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGGCATTTTTATG
52 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
* * *
17248040 GCTTGTAAATTCATTCAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTT
117 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** *
17248105 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAAATTTTCAGAAGGA
182 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * * *
17248170 GTTTTGGTCCCAAACATGGTGGACGTGATCCTTGTATTTTTTCTGGCATGCACAAAAAAATTCAG
247 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
17248235 CTAAAAAATCGAGGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTT
312 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
17248299 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTGTCGAG
377 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
17248364 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCTCACATCATGTGCG
442 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
17248429 CACACCCCCTCCCCCGACCCCCCCCGATCATTGGAACCCTAATGCCG-TCGGTCAGGTTCTCCGG
507 CACA--ACC-CCCCCG-GCCCCCCCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGG
** * ** *
17248493 CGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCTAAGCCCAGTA
567 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** * *** ** *
17248558 TGTGCTGCCA-CAACCCTCAATCCAGTTCGATCTTAGACTAAAAACAAACT-CGCATGCTTAGAC
632 TGTGCTG-CAGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
17248621 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACTGACCAG
696 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAG
* * ** * *
17248686 AGGGGTGGGATGCACAAATCGGGGATCGATCGGGTCCCAC-TCTGTGTGCT-GTCGATCCTGCTA
761 AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC-CTTCTGCGTGCTACT-GATCCTGCTA
* * * *
17248749 CCACAACCCTCGATCTGGTC-CAATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCAA
824 TCACAACCCTCG-TCTGGTCTGAA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
*
17248813 TGAAACG
887 CGAAACG
* * * * ** *
17248820 AGCGGGCGGGCGGGAACTACGTCGACCATAGAGACGGGATGCGCACGCTATGGATCAATAGGGTG
1 A---GGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
** *
17248885 GTAGGTGGGTTTATTCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTGTGGCTTGTAAATT
63 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
* *
17248950 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCATTTTCTATTTTTC
128 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * *
17249015 ATGATTTTCGAAACTTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGCAGTTTTGGCCC
193 ATGATTTTTGAAAC-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * *
17249080 AAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAGAAACTC
257 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * * * * *
17249145 AAAGTGTACAAGATTTTGTGACCACTTAAAAAAACTATCCGCATTTCAAACACTTTAATGGCTAC
322 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
17249210 -GGACAGCAAACC-ATAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGA
387 TGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
17249273 AGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACAC-ACCCC
451 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCC
**
17249337 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCTACTGGTCAGGTTCTCCGGCGATGCTCCGACGA
516 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGA
* * * * *
17249402 TGTTGCCCCGGTGAAGAAAAATTCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCA-CAA
581 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCAGCAA
*
17249466 -CC-C--T-C-G---G----T---CT--G---G---TCC-AAT-CTTAGACTGGGAATGAACTCC
645 CCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* ** * * * ** *
17249505 GTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGTGCTCAACCGGCCAGAGGGAAGGGATACG
710 GTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * ** *
17249570 CAAGCTC-GAGATCGGTCGTGTCCCCCTT-TGCATGCTACCAATCCTGCTATCACAACCCTGAGT
775 CAAGC-CGGGGATCGATCGGGT-CCCCTTCTGCGTGCTACTGATCCTGCTATCACAACCCT-CGT
* * * *
17249633 TTGGTC-CAATCTTAAACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGC
837 CTGGTCTGAA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A------
17249697 GGGCGGG
892 ---C--G
* * * *
17249704 CAGGCGTGTGGGCGGGCACTACGCCGGCCAGAGAGAGGGGATGCGCAAGCTGTGGACCGATAGGG
1 -AGGC----GGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *** *
17249769 TGGTATGTGGGTTTAGGAACATCTTCATATTTCTACCTGCCAATGCCA-TTTTGTGGCTTGTAAA
61 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
* * *
17249833 TTCATACAATGCTCCCTTAAACCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTT
126 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* ** * * * *
17249898 TGATGATTTTCAAAACTTTTTGCGTTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTCTTGGCC
191 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * *
17249963 CTAAACTTAGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACA
256 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC-
* *
17250028 T-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATTGCT
320 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
17250092 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATG
385 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
17250157 AGGGATAAGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATGGGCGCAC-ACCC
450 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCC
* * *
17250221 CCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGATCCGACG
515 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACG
* * * * *
17250286 ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCCGCAG
580 ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAA
* *
17250351 CCCTCCGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCC
645 CCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * ** *** *
17250416 TTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTACTCAGCCAATCAGAGGGGC-GGATGTG
710 GTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * ** * *
17250480 CAAGCTGGGGATCGGTCGGGTCCCC-TCTATGTGCTA-TCGATCTTGCTGTCACAACCCTCAGTC
775 CAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTACT-GATCCTGCTATCACAACCCTC-GTC
* * * ***
17250543 TGGTC-CAATCTTAGACTGAGAATGAACTCCATATGCCTAAGCCATTTGACGAAACG
838 TGGTCTGAA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * *
17250599 A-GCGGGCGGGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCGTCGAAT-GATAGGGTAGT
1 AGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGT-GGATCGATAGGGTGGT
* ** *
17250662 AGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTGGTAAATTCA
65 AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
17250727 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * * *
17250792 GATTTTTAAAACTTTTTACGGTACGAGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGCCCCAA
195 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * *
17250857 ACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAAAAAAAAAATTCAGCTAAAAATTCGA
260 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGA
* * *
17250922 AGTGCACAAGATTTTGTGACCATTTGAAGAAAGCGTCCCCATTTCAGACACTTTAATGGCTACTG
324 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
17250987 GCAGCAAACCTGTAAAATCTCAAATGCTCCTTAA-GGGTTGTGAGTTCTCAAGGTTT-AAGAGTG
389 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-G
*
17251050 GATAGCGGGG-CAATATAA-GGCCAAGTACTAGCACCCATCGCACATGCATGTGCGCAC-ACCCC
453 GATAG-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT-CATGTGCGCACAACCCC
* ** * * * * *
17251112 CTCGG---CCCCGATCG-CGAGTAACCTTAA--ACGC-CGACAGGTTCTCCAGCGAT--TGCCTA
516 CCCGGCCCCCCCGATCGTCG-G-AACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCT-CCGA
* * * * *
17251168 GGCAT--TGCCCCGACGAAGAAAAATTGCGACACTAGCACATGCCCGAG-CCAGCATGTGCTGCT
578 CG-ATGGTGCCCCGGCGAAGAAAAA-TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCA
* * * ** * *
17251230 GCAGACCCTCGAT-CGGT-CAAAATTAGATCTGGCAATGAACTCCGTATTCTTAGACTGGGAATG
641 GCA-ACCCTCGGTCCAGTCCGATCTTAGA-CTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* ** * * * *
17251293 CACTCTATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACCGGCCAAACGGGCAG
704 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * **
17251358 AATGCGCAAGCCAGGGATTGATCGGGTCCTCTTTTGCGTGCTACCT-ATCCTGCTGCCACAACCC
769 GATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTA-CTGATCCTGCTATCACAACCC
* * * * * * *
17251422 TCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG-CTTA-CACTA-GGAATGAACTTC
833 TCG-TCTGGTCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGC-CAACCG-ACGAA--AC
17251484 G
893 G
* * * * ** * * * * * *
17251485 TATGTCTAAGTC-AGC-CTACG-AAACGAGCGTG-CGGG-TGCTCAA-CCG-GCCAGA-GGGTCA
1 -A-GGC--GGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTG---GATCGAT-A
* * ** * * ****
17251542 GGATGCGTAAGCCGG-TGA-TCA-A-CTGGGTC-CCCCTCTGTGTGCCAATGCCATTTTTATGGC
58 GGGTG-GTAGGTGGGTTTAGGCACATCT---TCATATTTCTGTGTGCCAATGCCATTTTTATGGC
*
17251602 TTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
119 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * * * * * *
17251667 TTATTTTTCACGATTTTCGAAACCTTTTGCGGTTCTGGATTTTTTTAAATTTTTTCAGAAAGATT
184 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
**** * *
17251732 TTTCAAACCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
249 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * * *
17251797 AAAAACTCAAAATGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACATTA
314 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
17251862 ATGGCTACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTCA-GGGGTGTGAGTTCTCGAGGT
379 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
17251926 TTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAACACCCATCGCACATCATGTGCACA
444 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* *
17251991 C-A-CCCCCTGG-CCCCCCGATTGTCGGAACCCCAATGCCG-TCGGTCAGG---T-------T-C
509 CAACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGC
* * * * *
17252041 TCCGACGATGGTTCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGTATGTGCC
573 TCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
17252106 ACCGCAACCCTCGGT-C--T--GATC-----C--------AA-T-C--A----TAGACTGGGAAT
638 GCAGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * *
17252145 GAACTTCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAGCCGGCCAAAGGGGCG
703 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * *
17252210 GGATGCACAAGCTGGGGATCGGTCGGGTCCCC--CT-C-TGC-A-TG---CTGC---CACAACCC
768 GGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTACTGATCCTGCTATCACAACCC
* * * * *
17252263 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACG
833 TC-GTCTGGTCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * *
17252325 AGCGGGCGGGCGGGCAGGCGGGCACCACGTCGGCCAAAGAGACGGGATGCGTAA-CTCGTGGATC
1 A-------GGC--G--GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGC-CGTGGATC
* ** *
17252389 GATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTATTGC
54 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
* *
17252454 TTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
119 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * * * * * *
17252519 TTATTTTTCACGATTTTCGAAACCTTTTACGGTTCTGGATATTTTAAAATATTTTCAGAAAGATT
184 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
**
17252584 TTTGGAACCAAACTTGGTAGACGTGATCCTTGTATTTTTT
249 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
17252624 ATGAGGGATA
Statistics
Matches: 8295, Mismatches: 1344, Indels: 1041
0.78 0.13 0.10
Matches are distributed among these distances:
839 1 0.00
840 2 0.00
841 44 0.01
842 11 0.00
843 2 0.00
844 4 0.00
845 2 0.00
846 1 0.00
847 2 0.00
848 3 0.00
849 7 0.00
850 11 0.00
851 16 0.00
852 192 0.02
853 94 0.01
854 3 0.00
855 4 0.00
856 22 0.00
857 4 0.00
858 5 0.00
859 5 0.00
860 5 0.00
861 12 0.00
862 4 0.00
863 2 0.00
865 1 0.00
866 1 0.00
867 65 0.01
868 66 0.01
869 63 0.01
870 168 0.02
871 18 0.00
872 5 0.00
873 3 0.00
874 10 0.00
875 123 0.01
876 69 0.01
877 41 0.00
878 124 0.01
879 367 0.04
880 9 0.00
881 152 0.02
882 44 0.01
883 210 0.03
884 258 0.03
885 560 0.07
886 433 0.05
887 33 0.00
888 366 0.04
889 635 0.08
890 234 0.03
891 132 0.02
892 86 0.01
893 384 0.05
894 602 0.07
895 204 0.02
896 303 0.04
897 87 0.01
898 11 0.00
899 177 0.02
900 288 0.03
901 363 0.04
902 9 0.00
903 15 0.00
904 3 0.00
905 2 0.00
906 10 0.00
907 19 0.00
908 5 0.00
909 149 0.02
910 100 0.01
911 138 0.02
912 6 0.00
913 18 0.00
914 5 0.00
915 2 0.00
917 2 0.00
922 4 0.00
923 4 0.00
924 2 0.00
925 3 0.00
926 1 0.00
927 2 0.00
928 1 0.00
929 1 0.00
931 4 0.00
932 6 0.00
933 2 0.00
934 1 0.00
935 3 0.00
937 2 0.00
938 1 0.00
939 1 0.00
942 1 0.00
943 1 0.00
944 2 0.00
946 3 0.00
947 1 0.00
948 3 0.00
949 8 0.00
950 3 0.00
951 3 0.00
953 1 0.00
954 6 0.00
956 1 0.00
957 2 0.00
958 2 0.00
959 4 0.00
964 2 0.00
966 2 0.00
967 6 0.00
968 19 0.00
969 3 0.00
970 22 0.00
971 9 0.00
972 8 0.00
974 3 0.00
975 6 0.00
976 10 0.00
977 12 0.00
978 7 0.00
979 4 0.00
980 3 0.00
981 2 0.00
983 5 0.00
984 94 0.01
985 5 0.00
986 4 0.00
988 1 0.00
989 4 0.00
990 3 0.00
991 2 0.00
992 4 0.00
993 4 0.00
994 12 0.00
995 15 0.00
996 3 0.00
997 3 0.00
998 2 0.00
999 2 0.00
1000 2 0.00
1001 5 0.00
1002 3 0.00
1003 1 0.00
1004 1 0.00
1005 4 0.00
1006 5 0.00
1007 5 0.00
1008 11 0.00
1009 4 0.00
1010 85 0.01
1011 89 0.01
1012 11 0.00
1013 1 0.00
1014 1 0.00
1015 10 0.00
1016 1 0.00
1019 3 0.00
1020 4 0.00
1021 11 0.00
1022 4 0.00
1023 4 0.00
1024 4 0.00
1025 3 0.00
1026 23 0.00
1027 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
AGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCCGG
CCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG
CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCG
GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
GGGGATCGATCGGGTCCCCTTCTGCGTGCTACTGATCCTGCTATCACAACCCTCGTCTGGTCTGA
ACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
Found at i:17244954 original size:25 final size:25
Alignment explanation
Indices: 17244926--17244976 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
17244916 CCAATCCGAT
*
17244926 CTTAGACTTGGAA-GAACTCCGTATG
1 CTTAGACTGGGAACGAACT-CGTATG
17244951 CTTAGACTGGGAACGAACTCGTATG
1 CTTAGACTGGGAACGAACTCGTATG
17244976 C
1 C
17244977 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (25 bp):
CTTAGACTGGGAACGAACTCGTATG
Found at i:17250398 original size:26 final size:26
Alignment explanation
Indices: 17250369--17250421 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17250359 CCAGTCCGAT
*
17250369 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
17250395 CTTAGACCGGGAATGAACTCCTTATG
1 CTTAGACCGGGAATGAACTCCGTATG
17250421 C
1 C
17250422 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:17251711 original size:886 final size:866
Alignment explanation
Indices: 17246238--17252622 Score: 4457
Period size: 885 Copynumber: 7.2 Consensus size: 866
17246228 TGCTGGTTGC
17246238 CCAATGCCATTTTTATGGCTTGT-AA-TCATACAATGCGTCCCTTAAGCC-TCACGGCTGAAGTT
1 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATG-GTCCCTTAAGCCTTCAC-G-TGAAGTT
* * ** *
17246300 TCAT-GCAAGATGACTCGTTTTCTATTTTTCAGGATTTTTTGAAACTTTTTACGGTTCCGGATTT
63 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCAAAACTTTTTGCGGTT-CGGATTT
*
17246364 TTTCAAAATTTTTTCAGGTAAGGAGTTTTTGGCCCCAAACTTTGGTAGAAC-TGATCCTTGTATT
126 TTT-AAAATTTTTTCA-G-AAAGA-TTTTTGGCCCCAAAC-TTGGTAG-ACGTGATCCTTGTATT
* * * *
17246428 TTT-TTCGGCATGCCACAAAAAATTTAAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATT
185 TTTGTT-GGCATG-CACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATT
* * *
17246492 TGAAAAAAGTGTCCACATTTCAAACACTTTAATGGCTA-TAGGCAGGAAACCTGTAAAATCTCAA
248 TG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCTCAA
*
17246556 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCA
311 ATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATA-AGGCCA
* *
17246621 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCCCCGGCCCTCCTGATCATTGGAA
373 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT----CGG-CC-CC-GATCGTCGGAA
* * * * * **
17246686 CCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATG
431 CCCCAA-GACGCCGGACAGGTTCTCCAGCGATG-ACCGACGAT-GTGCCCCGACGAAGAAAAATG
* * * * * * * *** **
17246751 CT-GCACCAGCACATGCCTGAGCCTAGTATGTGCTGCCACAACCCTCAGTCCAGTTTGATCTTAG
493 -TGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCCGCAGCCCTCCGTCCAGTCCAAAATTAG
*** * * * *
17246815 ACTAAAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAA
557 ACTGGCAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAA
* * ** * * * * ** *
17246880 ACAAGCATGCGGGCGCTCAACCGGCCAGAGGGGTGGAATGCGCAAACCAGGGATCGGCCGGATCT
622 ACGAGCATGCGGGCACTCAACCAACCAAACGGG-CGAATGCGCAAGCCAGGGATCGATCGGGTC-
** * ** * * * *
17246945 TGCTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGT-CAGATCTTAGACTGGGAAT
685 CCCTCTATGTGCTACCGATCCTGCTGCCACAACCCTCAGTCTGGTCCA-ATCTTAGACTGAGAAT
** *** * * ** * *
17247009 GAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCAATACGTCAGCCAAAGA
749 GAACTCCATATGCCTAAGCCATTTGACGAAACGA----GCGGGCGGGCACTACACCGGCCAGAGA
* * ** *
17247074 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
810 GACGAGATGCGCAAGCCG-CGAT-GAT---GCAG-AGCTGGG-TT--GCACA-C-TCA-A--TCT
*
17247139 GCG-TG
861 GTGATG
* *
17247144 CCAATGCCATTTTTATGGCTTGTAAATTCGTATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
1 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* ** * *
17247209 TGGCAAGACGTCTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTGCAGTTCGGGATTTTGT
66 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC-TTTTTGCGGTTC-GGATTTTTT
* * * * * * *
17247274 AAAATTTTTTC-GGAAGCAGTTTTGACCCAAAACTTGGAAGACATGATCCGTGTATTTTTTGTTG
129 AAAATTTTTTCAGAAAG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTG
* *
17247338 GCATGCACAAAACAATTCAGCTAAAAACTC-AAGTGTACAAGATTTTGTGA-CATTTGAAAAAGT
192 GCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGT
* * *
17247401 GTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTCTAAAATCTCAAATGTTCTTTAA
257 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
17247466 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCAAAGTACCAGCAC
322 -GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGCC-AAGTACCAGCAC
* * * * *
17247531 CCATCGCACATCATGTGCACACACCCCC-CGGCCCCCCGATCGTAGGAAACCCAATGCCGCCGGT
384 CCATCGCACATCATGTGCGCACACCCCCTCGG--CCCCGATCGTCGGAACCCCAA-GACGCCGGA
* * *
17247595 CAGGTTCTCC-GATGAT-ACTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
446 CAGGTTCTCCAG-CGATGA--CCGACGAT-GTGCCCCGACGAAGAAAAATGTGGCACCAGCACAT
* * * * *
17247658 GCCCGAGCTCAGCATGTGCT-----A----T-CGT--AATCC-----T---CTGTC--CG-A-TC
507 ACCCGAGCCCAGCATGTGCTGCCGCAGCCCTCCGTCCAGTCCAAAATTAGACTGGCAATGAACTC
* * * * * *
17247699 CG-AT-CTAAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGCGTACGAGCG
572 CGTATGCTTAGACCGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAACGAGCATGCG-G-G
* ** * *** * * ** * *
17247762 CATTCAACCGGCTAGGGGGGCGGGATGCGTAAGCTGGGGATCGATCGGGTCCCCATCTGCT-TCC
635 CACTCAACCAACCAAACGGGC-GAATGCGCAAGCCAGGGATCGATCGGGTCCCC-TCT-ATGTGC
** * * ** ** * * *
17247826 TGTCGATCCTGCT-ACGCAACCCTC-GATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATA
697 TACCGATCCTGCTGCCACAACCCTCAG-TCTGGTCCAATCTTAGACTGAGAATGAACTCCATATG
*** * *
17247889 CCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCGGGTACTATGCCGGCCAAAGAG
761 CCTAAGCCATTTGACGAAACGA-------GCGGGCGGGC--AC---TAC-A--CCGGCCAGAGAG
* * ** * * *
17247954 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTA
811 ACGAGATGCGCAAGCCG-CGAT-GAT---GCAG-AGCTGGG-TT--GCACA-C-TCA-A--TCTG
17248019 TG-TG
862 TGATG
* * *
17248023 CCAATGGCATTTTTATGGCTTGTAAATTCATTCAATGGTCCCTTGAGCCTTCACGTGAAGTTTCA
1 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * ** *
17248088 TGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
66 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTC-GGATTTTTTA
** * * * * *
17248153 AAAAATTTTCAGAAGGAGTTTTGGTCCCAAACATGGTGGACGTGATCCTTGTATTTTT-TCTGGC
130 AAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGC
*
17248217 ATGCACAAAAAAATTCAGCTAAAAAATCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAGTGT
194 ATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGT
17248282 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
259 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
17248347 GAGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
324 G-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAA-GGCCAAGTACCAGCACCC
* * * * * * * *
17248412 ACCTCACATCATGTGCGCACACCCCCTCCCCCGACCCCCCCCGATCATTGGAACCCTAATGCCGT
386 ATCGCACATCATGTGCGCACACCCCCT----CG----GCCCCGATCGTCGGAACCCCAA-GACGC
* * * ** * **
17248477 CGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCAC
442 CGGACAGGTTCTCCAGCGATG-ACCGACGAT-GTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
* ** * * * ** * * ** *** **
17248542 ATGCCTAAGCCCAGTATGTGCTGCCACAACCCTCAATCCAGTTCGATCTTAGACTAAAAACAAAC
505 ATACCCGAGCCCAGCATGTGCTGCCGCAGCCCTCCGTCCAGTCCAAAATTAGACTGGCAATGAAC
* * * *
17248607 T-CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGG
570 TCCGTATGCTTAGACCGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAACGAGCATGCGGG
* ** * * * * * ** * *
17248671 CGCTCAACTGACCAGAGGGGTGGGATGCACAAATCGGGGATCGATCGGGTCCCACTCTGTGTGCT
635 CACTCAACCAACCAAACGGG-CGAATGCGCAAGCCAGGGATCGATCGGGTCCC-CTCTATGTGCT
** * * *
17248736 GTCGATCCTGCTACCACAACCCTC-GATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
698 ACCGATCCTGCTGCCACAACCCTCAG-TCTGGTCCAATCTTAGACTGAGAATGAACTCCATATGC
* **** * ** * * *
17248800 CTAATCCAACCAATGAAACGAGCGGGCGGGCGGGAACTACGTCGACCATAGAGACGGGATGCGCA
762 CTAAGCCATTTGACGAAACGAGCGGGCGGGC----ACTACACCGGCCAGAGAGACGAGATGCGCA
* * * ** * *
17248865 CGCTATG-GATCAATAGGGTGGTAGGTGGGTTTATTCACATCTTCATATTTCTGTG-TG
823 AGC--CGCGAT-GAT---GCAG-AGCTGGG--T-TGCACA-C-TCA-A--TCTGTGATG
*
17248922 CCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
1 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
17248987 TGGCAAGACGTCTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTTGCGGTTCGAGATTTTTT
66 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC-TTTTTGCGGTTCG-GATTTTTT
* * *
17249052 AAAATTTTTTC-GGAAGCAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
129 AAAATTTTTTCAGAAAG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * * ** *
17249116 CATGCACAAAACAATTCAGCTAGAAACTCAAAGTGTACAAGATTTTGTGACCACTTAAAAAAACT
193 CATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAGT
* * * *
17249181 ATCCGCATTTCAAACACTTTAATGGCTAC-GGACAGCAAACC-ATAAAATCTCAAATGCTCTTTA
257 GTCCCCATTTCAGACACTTTAATGGCTACTGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
17249244 AGGGGATGTGAGTTCTCAAGGTTTGATGAAGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCA
321 AGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGG-GGCAATATAA-GGCCAAGTACCAGCA
* * * * *
17249309 CCCATTGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-CTACT
383 CCCATCGCACATCATGTGCGCACACCCCCTCGG---CCCCGATCGTCGGAACCCCAA-GAC-GCC
* * * ** *
17249373 GGTCAGGTTCTCCGGCGATGCTCCGACGATGTTGCCCCGGTGAAGAAAAAT-TCGACACCAGCAC
443 GGACAGGTTCTCCAGCGATG-ACCGACGATG-TGCCCCGACGAAGAAAAATGT-GGCACCAGCAC
* * * *
17249437 ATGCCCGAGCCCAGCATGTGCTACCACAACCCT-CG----G--------T---CT-G----G---
505 ATACCCGAGCCCAGCATGTGCTGCCGCAGCCCTCCGTCCAGTCCAAAATTAGACTGGCAATGAAC
* * * ** ** *
17249478 TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGG
570 TCCGTATGCTTAGACCGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAACGAGCATGCGGG
** ** * * * * * * * *
17249541 TGCTCAACCGGCCAGA-GGGAAGGGATACGCAAGCTC-GAGATCGGTCGTGTCCCC-CTTTGCAT
635 CACTCAACCAACCAAACGGG--CGAATGCGCAAGC-CAGGGATCGATCGGGTCCCCTCTATG--T
* ** * * * *
17249603 GCTACCAATCCTGCTATCACAACCCTGAGTTTGGTCCAATCTTAAACT-AGGAATGAACTCCGTA
695 GCTACCGATCCTGCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTGA-GAATGAACTCCATA
*** *
17249667 TGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCAGGCGTGTGGGCGGGCACTACGCCGGC
759 TGCCTAAGCCATTTGACG-AA--A---------C--G-A-GC----GGGCGGGCACTACACCGGC
* * * * * ** *
17249732 CAGAGAGAGGGGATGCGCAAGCTGTGGACCGATAGGGTGGTATG-TGGGTTTAGGAACATCTTCA
804 CAGAGAGACGAGATGCGCAAGCCG-CGA-TGAT---GCAG-A-GCTGGG-TT--GCACA-C-TCA
* *
17249796 TATTTCT-ACCTG
857 -ATCTGTGA--TG
* * * *
17249808 CCAATGCCA-TTTTGTGGCTTGTAAATTCATACAATGCTCCCTTAAACCTTCACGTGAACTTTCA
1 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* *
17249872 TGGCAAGACGACTCGTTTTCTATTTTTGATGATTTTCAAAACTTTTTGCGTTTCGGGATTTTTTA
66 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTC-GGATTTTTTA
* * * * * *
17249937 AAATTTTTTCAGAAGGAGTCTTGGCCCTAAACTTAGTAGATGTGATCCTTGTATTTTTGTTGGCA
130 AAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
17250002 TGCACAAAAAAATTCAGCTAAAAACAT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATG
195 TGCACAAAAAAATTCAGCTAAAAA-ATCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTG
*
17250066 TCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAA
258 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AA
*
17250131 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGTGCCAAGTACCAGCACC
322 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGGCAATATAAG-GCCAAGTACCAGCACC
* * * *
17250196 CATCGCACATCATGGGCGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGT
385 CATCGCACATCATGTGCGCACACCCCCTCGG--CCC-CGATCGTCGGAACCCCAA-GACGCCGGA
*
17250261 CAGGTTCTCCGGCGATGATCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATAC
446 CAGGTTCTCCAGCGATGA-CCGACGAT-GTGCCCCGACGAAGAAAAATGTGGCACCAGCACATAC
* ** *
17250326 CCGAGCCCAGCATGTGCTGCCGCAGCCCTCCGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
509 CCGAGCCCAGCATGTGCTGCCGCAGCCCTCCGTCCAGTCCAAAATTAGACTGGCAATGAACTCCG
* *
17250391 TATGCTTAGACCGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTACT
574 TATGCTTAGACCGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACT
* * * * * * ** * *
17250456 CAGCCAATCAGAGGGGCGGATGTGCAAGCTGGGGATCGGTCGGGTCCCCTCTATGTGCTATCGAT
639 CAACCAACCAAACGGGCGAATGCGCAAGCCAGGGATCGATCGGGTCCCCTCTATGTGCTACCGAT
* *
17250521 CTTGCTGTCACAACCCTCAGTCTGGTCCAATCTTAGACTGAGAATGAACTCCATATGCCTAAGCC
704 CCTGCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTGAGAATGAACTCCATATGCCTAAGCC
17250586 ATTTGACGAAACGAGCGGGCGGGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCGTCGAAT
769 ATTTGACGAAACGAGCGGGCGGGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCG-CG-AT
* * * *
17250651 GATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATG
832 GAT---GCAG-AGCTGGG-TT--GCACA-C-TCA-ATCTGTG-ATG
*
17250697 CCAATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
1 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
17250762 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTACGAGATTTTTTA
66 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCG-GATTTTTTA
** *
17250827 AAATTTTTTTGGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCA
130 AAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * * *
17250892 TGCAAAAAAAAAATTCAGCTAAAAATTCGAAGTGCACAAGATTTTGTGACCATTTGAAGAAAGCG
195 TGC-ACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAA-AAAGTG
*
17250957 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAG
258 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * *
17251022 GGTTGTGAGTTCTCAAGGTTT-AAGAGTGGATAGCGGGGCAATATAAGGCCAAGTACTAGCACCC
323 GGGTGTGAGTTCTCGAGGTTTGATGAG-GGATAG-GGGGCAATATAAGGCCAAGTACCAGCACCC
**
17251086 ATCGCACATGCATGTGCGCACACCCCCTCGGCCCCGATCG-CGAGTAACCTTAA-ACGCC-GACA
386 ATCGCACAT-CATGTGCGCACACCCCCTCGGCCCCGATCGTCG-G-AACCCCAAGACGCCGGACA
* * * *
17251148 GGTTCTCCAGCGATTG-CCTAGGCAT-TGCCCCGACGAAGAAAAAT-TGCGACACTAGCACATGC
448 GGTTCTCCAGCGA-TGACCGACG-ATGTGCCCCGACGAAGAAAAATGTG-G-CACCAGCACATAC
* *
17251210 CCGAG-CCAGCATGTGCTGCTGCAGACCCT-CGAT-CGGT-CAAAATTAGATCTGGCAATGAACT
509 CCGAGCCCAGCATGTGCTGCCGCAG-CCCTCCG-TCCAGTCCAAAATTAGA-CTGGCAATGAACT
* * * *
17251271 CCGTATTCTTAGACTGGGAATGCACT-CTATATGCCTAAGTCAACCCACGAAACGAGCATGCGGG
571 CCGTATGCTTAGACCGGGAATGAACTCCT-TATGCCTAAGTCAACCCACAAAACGAGCATGCGGG
* ** * * *
17251335 CGCTCAACCGGCCAAACGGGCAGAATGCGCAAGCCAGGGATTGATCGGGTCCTCT-TTTGCGTGC
635 CACTCAACCAACCAAACGGGC-GAATGCGCAAGCCAGGGATCGATCGGGTCCCCTCTAT--GTGC
* ** *
17251399 TACCTATCCTGCTGCCACAACCCTC-GATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
697 TACCGATCCTGCTGCCACAACCCTCAG-TCTGGTCCAATCTTAGACTGAGAATGAACTCCATATG
* **
17251463 CTTACACTAGGAATGAACTTCGTATGTCTAAGTCAGCCTACGAAACGAGCGTGCGGGTGCT-CAA
761 ----C-CT---AA-G--C--C--A--T-T---T--G---ACGAAACGAGCGGGCGGGCACTAC-A
* * * *
17251527 CCGGCCAGAGGGTC-AGGATGCGTAAGCCG-G-TGAT-CA-A-CTGGG-T-C-C-C-C-CTCTGT
799 CCGGCCAGAGAGACGA-GATGCGCAAGCCGCGATGATGCAGAGCTGGGTTGCACACTCAATCTGT
17251580 G-TG
863 GATG
*
17251583 CCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
1 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * *
17251648 TGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCGAAACCTTTTGCGGTTCTGGATTTTTTT
66 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTC-GGATTTTTTA
**** *
17251713 AAATTTTTTCAGAAAGATTTTTCAAACCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
130 AAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
17251778 TGCACAAAAAAATTCAGCTAAAAACTCAAAATGTACAAGATTTTGTGACCATTTGAAAAACGTGT
195 TGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA-GTGT
* * *
17251843 CCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTCAGG
259 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
17251908 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAACACCCA
324 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAA-GGCCAAGTACCAGCACCCA
* * * * *
17251973 TCGCACATCATGTGCACACACCCCCT-GGCCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAG
387 TCGCACATCATGTGCGCACACCCCCTCGG--CCCCGATCGTCGGAACCCCAA-GACGCCGGACAG
** *
17252037 GTTCTCC-GACGAT----G--G-T-T-CCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGA
449 GTTCTCCAG-CGATGACCGACGATGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATACCCGA
* ** * *
17252092 GCCCAGTATGTGCCACCGCAACCCT-CG----GT-C-----T-GA-T--C---CAA-T-C--A--
513 GCCCAGCATGTGCTGCCGCAGCCCTCCGTCCAGTCCAAAATTAGACTGGCAATGAACTCCGTATG
* * * * * * * ** *
17252133 --TAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAGC
578 CTTAGACCGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAAC
** * * * ** * *
17252196 CGGCCAAAGGGGCGGGATGCACAAGCTGGGGATCGGTCGGGTCCCC-C----T-CT---G--CAT
643 CAACCAAACGGGC-GAATGCGCAAGCCAGGGATCGATCGGGTCCCCTCTATGTGCTACCGATCCT
* * * * * *
17252250 GCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAT
707 GCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTGAGAATGAACTCCATATGCCTAAGCCATT
* * * * * *
17252315 CGATGAAACGAGCGGGCGGGCGGGCAGGCGGGCACCACGTCGGCCAAAGAGACGGGATGCGTAA-
772 TGACGAAACGA----GCGGGCGGGCA--C---TA-CAC--CGGCCAGAGAGACGAGATGCGCAAG
* ** * * * *
17252379 CTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCT-ACGTG
825 C-CG-CGAT-GAT---GCAG-AGCTGGG-TT--GCACA-C-TCA-ATCTGTGA--TG
* *
17252435 CCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCA
1 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * * * *
17252500 TGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCGAAACCTTTTACGGTTCTGGATATTTTA
66 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTC-GGATTTTTTA
* **
17252565 AAATATTTTCAGAAAGATTTTTGGAACCAAACTTGGTAGACGTGATCCTTGTATTTTT
130 AAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
17252623 TATGAGGGAT
Statistics
Matches: 4634, Mismatches: 550, Indels: 644
0.80 0.09 0.11
Matches are distributed among these distances:
815 8 0.00
818 1 0.00
819 8 0.00
821 1 0.00
823 1 0.00
825 2 0.00
826 3 0.00
827 21 0.00
828 1 0.00
829 1 0.00
830 2 0.00
831 3 0.00
832 1 0.00
833 2 0.00
836 2 0.00
837 2 0.00
838 4 0.00
840 1 0.00
841 51 0.01
842 1 0.00
844 1 0.00
846 3 0.00
847 1 0.00
848 1 0.00
850 3 0.00
852 179 0.04
853 91 0.02
854 1 0.00
857 1 0.00
859 1 0.00
860 1 0.00
861 2 0.00
864 1 0.00
866 1 0.00
867 50 0.01
868 71 0.02
869 65 0.01
870 160 0.03
871 22 0.00
872 1 0.00
873 3 0.00
874 3 0.00
876 5 0.00
877 35 0.01
878 102 0.02
879 366 0.08
880 6 0.00
881 2 0.00
882 14 0.00
883 130 0.03
884 237 0.05
885 549 0.12
886 405 0.09
887 17 0.00
888 29 0.01
889 121 0.03
890 241 0.05
891 113 0.02
892 2 0.00
893 96 0.02
894 10 0.00
895 111 0.02
896 4 0.00
897 1 0.00
898 10 0.00
899 316 0.07
900 236 0.05
901 72 0.02
902 43 0.01
903 38 0.01
904 4 0.00
905 2 0.00
906 61 0.01
907 63 0.01
908 17 0.00
909 136 0.03
910 98 0.02
911 161 0.03
912 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (866 bp):
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGATTTTTTAA
AATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
GCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAATATAAGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCTCGGCCCCGATCGTCGGAACCCCAAGACGCCGGACAGGTTCTCC
AGCGATGACCGACGATGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATACCCGAGCCCAGCA
TGTGCTGCCGCAGCCCTCCGTCCAGTCCAAAATTAGACTGGCAATGAACTCCGTATGCTTAGACC
GGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAACCAACCAAA
CGGGCGAATGCGCAAGCCAGGGATCGATCGGGTCCCCTCTATGTGCTACCGATCCTGCTGCCACA
ACCCTCAGTCTGGTCCAATCTTAGACTGAGAATGAACTCCATATGCCTAAGCCATTTGACGAAAC
GAGCGGGCGGGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCGCGATGATGCAGAGCTGGG
TTGCACACTCAATCTGTGATG
Found at i:17252857 original size:26 final size:26
Alignment explanation
Indices: 17252828--17252881 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
17252818 GATCTGATCA
*
17252828 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGCGAATGAACTCCGTATGCC
*
17252854 TAGACTGCGAATGAACTTCGTATGCC
1 TAGACTGCGAATGAACTCCGTATGCC
17252880 TA
1 TA
17252882 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGCGAATGAACTCCGTATGCC
Found at i:17254784 original size:876 final size:869
Alignment explanation
Indices: 17252854--17255456 Score: 3562
Period size: 864 Copynumber: 3.0 Consensus size: 869
17252844 TCCGTATGCC
* * *
17252854 TAGACTGCGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
1 TAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * *
17252919 GCCAAAGGGGCGGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCT--G---C-C-
66 GCCAGAGGGGCGGGATGCGCAAGC-CGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCGATCCTCT
* *
17252977 A---CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGA
130 ACCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGA
* * * * * * *
17253039 CGAAACGAAC-GAGCGGGCGGACGGGCAGGCACCACGTCGGCCAGAGAGACGGGATGCACACGCC
194 C-AAAC-AACAG-GCGGGCGGGCGAGCGGGCACTACG-CCGCCAGAGAGACGGGATGCGCAAGCC
* *
17253103 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCGTGCCAATGCCATTT
255 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* * *
17253168 TTATTGCTTGTAAATTCATACAATTGTCCTTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGAC
320 TTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
17253233 TCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATATTTTCAG
385 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-G
* * ** ** *
17253298 AAA-GAGTTCTAGCATCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTACCATGTACAAAAAA
449 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * * *
17253362 ATTCAGCTAAAAACTAGAAGTGTACAATATTTTGTGACCATTTGGAAAAAGTGTCCACATATCAG
514 ATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
17253427 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTGAGGGGGTGTGAGTT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTT
17253492 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
644 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * * * *
17253557 TGTGCGCAGACTGCCTGG-CCCCCTATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
709 TGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACA
*
17253621 ATGCTCCAACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
774 ATGCTCCAACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATACCCGAGCCCAGCATG
* *
17253686 TTCTACCGTAACCCTCGGTCCGATCTGATCT
839 TCCTACCGCAACCCTCGGTCCGATCTGATCT
* * * *
17253717 TAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCGTGAAACGAGTGTGCGGGTGCACAGCCG
1 TAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * * *
17253782 GCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGACCGGGTCCTCTTCTGTGTGCTGTCGATCCTA
66 GCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTCTGCGTGCTG-CGATCCT-
* ** *
17253847 CTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAACAAACTCTGAATGCCTAAGCCAACC
128 CTACCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
* * * **
17253912 GACAAAACAAGCAGGCGGGCGGGCGTGCGGGCACTACGCCGCCCAGAGAGACGAGATTCGCAAAA
192 GAC-AAACAA-CAGGCGGGCGGGCGAGCGGGCACTACGCCG-CCAGAGAGACGGGATGCGCAAGC
* * *
17253977 CGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCA-T
254 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * * *
17254041 TTTAGGGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCG
319 TTTA-TGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
17254106 ACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTC
383 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* *
17254171 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAGA
448 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
17254236 AATTCAGATAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
513 AATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
17254300 GATACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGT
578 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGT
*
17254365 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATC
643 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
17254430 ATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGA
708 ATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* ** *
17254495 CAATGCTCCAACGATGGTGCCCC-AGTGAAGAAAAATGTGGCACCAGCACATACCCGAGCCCAGT
772 CAATGCTCCAACGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATACCCGAGCCCAGC
*
17254559 ATGTCCTGCCGCAACCCTCGGTCCGATCTGATCT
836 ATGTCCTACCGCAACCCTCGGTCCGATCTGATCT
17254593 TAGACTTG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
1 TAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
17254657 GGCTAGA-GGGCTGGGATGCGCAAGCCAGGGATCGGTCGTGCCCCCCTCCGCGTGCTGCCGATCC
65 GGCCAGAGGGGC-GGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTG-CGATCC
* * *
17254721 TGCTACCGCAACCCTCAGTCTGGTCGAATCTTACACTGGGAATGAACTCTGTATGCCTAAGCCAA
127 T-CTACCGCAACCCTCGGTCCGGTCG-ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * * *
17254786 CTGAC---GAA-A-----G-GAGCGAGCGGGCACTACGGCAGCCGGAGAGACGGGATGCGCAAGC
190 CCGACAAACAACAGGCGGGCGGGCGAGCGGGCACTAC-GCCGCCAGAGAGACGGGATGCGCAAGC
* *
17254841 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCATTGCCATT
254 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
*
17254906 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
319 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
17254971 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
384 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * * *
17255036 AAAGGAGTTTTGGCCCCAAACTTGTTACACGTGATCCTCGTATTTTTTTTGGCATGCACAAAAAA
449 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
17255101 ATTCA-ACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCA
514 ATTCAGA-TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
17255165 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGAGAGT
578 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGT
*
17255229 TCTCGAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
643 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
17255294 ATGTGCGCACA-CCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--
708 ATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * * * *
17255355 C---G-----ACGATAGTGCCCCGACGAAGAAAAATGCAGCACCAGCATATGCCCGACCCCAGCA
772 CAATGCTCCAACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATACCCGAGCCCAGCA
* * *
17255412 TGTGCTACCGCAACCCTCGATCCGGTCTGATCT
837 TGTCCTACCGCAACCCTCGGTCCGATCTGATCT
*
17255445 TAGACTGGGAAT
1 TAGACTGAGAAT
17255457 TAACACCCTA
Statistics
Matches: 1542, Mismatches: 165, Indels: 77
0.86 0.09 0.04
Matches are distributed among these distances:
851 2 0.00
852 83 0.05
853 1 0.00
857 1 0.00
860 1 0.00
862 9 0.01
863 143 0.09
864 376 0.24
865 91 0.06
866 1 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 3 0.00
874 180 0.12
875 354 0.23
876 291 0.19
877 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (869 bp):
TAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCGATCCTCTA
CCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACA
AACAACAGGCGGGCGGGCGAGCGGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGA
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCC
AACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATACCCGAGCCCAGCATGTCCTACC
GCAACCCTCGGTCCGATCTGATCT
Found at i:17255494 original size:26 final size:26
Alignment explanation
Indices: 17255443--17255495 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17255433 CCGGTCTGAT
*
17255443 CTTAGACTGGGAATTAACACCCTATG
1 CTTAGACTGGGAATGAACACCCTATG
* * *
17255469 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCCTATG
17255495 C
1 C
17255496 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCCTATG
Found at i:17256019 original size:380 final size:366
Alignment explanation
Indices: 17255288--17256031 Score: 970
Period size: 380 Copynumber: 2.0 Consensus size: 366
17255278 GCACCCATCG
17255288 CACATCATGTGCGCACACCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
1 CACATCATGTGCGCACACCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
*
17255353 TCCGACGATAGTGCCCCGACGAAGAAAAATGCAGCACCAGCATATGCCCGACCCCAGCATGTGCT
66 TCCGACGATAGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGACCCCAGCATGTGCT
** * * * *
17255418 ACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATTAACACCCTATGCTTAGGCTGGGAAT
131 ACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAAAGAACACCATAAGCTTAGACTGGAAAT
* * *
17255483 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGGG
196 GAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGGG
* * * * * **
17255548 CATGTGTAAGCCGAGGATTAGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGTTGTCACAACCCT
261 CATGCGCAAGCCGAGGATCAGTCGGGTCACCCTCTGCATGCTGTCGATCCTGCTACCACAACCCT
*
17255613 CAATCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATCA
326 CAATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATCA
* * *
17255654 CACATCATGTGTGCACACCCCCCTTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
1 CACATCATGTGCGCACA--CCCC--CGGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* *
17255719 GTTCTCAGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATG-CCG
62 GTTCTC---CGA-----C-G--ATAGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCG
* * * * ** *
17255783 AGCCCAGCATGTTCTCCCGCAACCCTCGGT-TTGTCTGATCTTAGACTGGGAAAGAACTCCATAA
116 ACCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAAAGAACACCATAA
* *
17255847 GCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGTGCGTGCAGGCGCTCAG
181 GCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTACAGGCGCTCAG
* * *
17255912 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCGGGTCACCCTCTGCGTGCTGTCGATC
246 CCGGCCAGAGGGG-GGCATGCGCAAGCCGAGGATCAGTCGGGTCACCCTCTGCATGCTGTCGATC
* * * * *
17255977 CTGCTACCATAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
310 CTGCTACCACAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
17256032 GCCTAAGCAA
Statistics
Matches: 322, Mismatches: 40, Indels: 18
0.85 0.11 0.05
Matches are distributed among these distances:
366 16 0.05
368 4 0.01
370 44 0.14
373 3 0.01
378 1 0.00
379 99 0.31
380 119 0.37
381 36 0.11
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.20
Consensus pattern (366 bp):
CACATCATGTGCGCACACCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
TCCGACGATAGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGACCCCAGCATGTGCT
ACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAAAGAACACCATAAGCTTAGACTGGAAAT
GAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGGG
CATGCGCAAGCCGAGGATCAGTCGGGTCACCCTCTGCATGCTGTCGATCCTGCTACCACAACCCT
CAATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATCA
Found at i:17256757 original size:26 final size:26
Alignment explanation
Indices: 17256721--17256773 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17256711 CTGGTCTGAT
*
17256721 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17256747 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17256773 C
1 C
17256774 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17257896 original size:159 final size:158
Alignment explanation
Indices: 17257590--17257928 Score: 421
Period size: 159 Copynumber: 2.1 Consensus size: 158
17257580 CATGCCTGAG
* *
17257590 CCCACGAAACGAGAATGCGGGCACTCAGTCGAACAGAGGGACGGGATGCAAAAGCTAGGGATCGA
1 CCCACGAAACGAGAATGCGGGCACTCAGCCGAACAGAGGGACGGGATGCAAAAGCGAGGGATCGA
* * * *
17257655 CCGGGTCCCCTTCTACGTGCTGCTGATCCTACTACCGTAACCCTCAGTTCGGTCCAATCTTAGAC
66 CCGGGTCCCCCTCTACGTGCAGCCGATCCTACTACCGTAACCCTCAGTCCGGTCCAATCTTAGAC
* * *
17257720 TGGAAATGAACTTCGTATGCCTAAGTCAA
131 TGGAAATAAACTCCGTAT-CCTAAGCCAA
* ** * ** * *
17257749 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCATAAGCCGA-GGATCG
1 CCCACGAAACGAGAATGCGGGCACTCAGCCGAACAGAGGGACGGGATGCAAAAG-CGAGGGATCG
* * *
17257813 ACCGGGTCCCCCTCTACGTTCAGCCGATCCTGCTACCGTAACCCTC-GATCCGGTCCTATCTTAG
65 ACCGGGTCCCCCTCTACGTGCAGCCGATCCTACTACCGTAACCCTCAG-TCCGGTCCAATCTTAG
* *
17257877 AGTGGGAATAAACTCCGTATCCTAAGCCAA
129 ACTGGAAATAAACTCCGTATCCTAAGCCAA
* *
17257907 CCGACGAAACGAGAAGGCGGGC
1 CCCACGAAACGAGAATGCGGGC
17257929 GGGCACTACG
Statistics
Matches: 151, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
158 27 0.18
159 122 0.81
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
CCCACGAAACGAGAATGCGGGCACTCAGCCGAACAGAGGGACGGGATGCAAAAGCGAGGGATCGA
CCGGGTCCCCCTCTACGTGCAGCCGATCCTACTACCGTAACCCTCAGTCCGGTCCAATCTTAGAC
TGGAAATAAACTCCGTATCCTAAGCCAA
Found at i:17259763 original size:782 final size:778
Alignment explanation
Indices: 17257742--17259999 Score: 2728
Period size: 782 Copynumber: 2.9 Consensus size: 778
17257732 TCGTATGCCT
* * * * * * ** *
17257742 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCATAAGCCGA
1 AAGTCAACCCACGAAAGGAGCGTGCAGGCACTCAACCGGCCAGAGGGACGAGATGCGCAAGCTGA
* * * * * * * *
17257807 GGATCGACCGGGTCCCCCTCTACGTTCAGCCGATCCTGCTACCGTAACCCTCGATCCGGTCCTAT
66 GGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCAGTCCAAT
* * * * * * * *
17257872 CTTAGAGTGGGAATAAACTCCGTAT-CCTAAGCCAACCGACG--A-AA-----CGAGAAGGCGGG
131 CTTAGACTGAGAATGAACTTCATATGCCTAAGCCAACCGATGAAACAAGTGGGCGGGCAGGCGGG
* * *
17257928 CGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTTGTAGGTGGGT
196 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
17257993 TTAGGCACATCTTCATATTT-TTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATG
261 TTAGGCACATCTTCATATTTCTTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
17258057 GTCCCATATGCCTTCACGTGAAGTGTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTC
324 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT-
* *
17258122 A-AAACTTTTTGCAGTTTGAGATTTTTTAAAATTTTTTC-AGAAGGATTTTTGACCCCAAACTTG
388 AGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGATTTTAG-CCCCAAACTTG
*
17258185 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAACTAAAAACTCAAAGTGTA
451 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTA
*
17258250 CAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
516 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * ** * *
17258315 AACCTGTAAAATCTCTAATACTCTTTAAGGGGGTGCGAGTTCTTAAGGTTTGATTAGGTATAGGG
581 AACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGG
* **
17258380 GGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCC
646 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCAAGG-CCCCC
* * * * *
17258445 CGAGCCCAGCATGTGCTGCCGCACCCCTCGGTCCGGTCCGATCGTGGACTGGGAATGAACTCCGT
710 CGAGCCCAG-A-GTGCTGCCGCACCCATCGCTCCGGTACGATCGTGCACTGGGAATGAAATCCGT
** **
17258510 ATGCTT
773 AACCGA
* ** * *
17258516 AAGTCAACCCACGAAATGAGCGTGCAGGCACTCAACCGGCCAGAGGGGTGCGATGTGCAAGCTGA
1 AAGTCAACCCACGAAAGGAGCGTGCAGGCACTCAACCGGCCAGAGGGACGAGATGCGCAAGCTGA
* * * * *
17258581 GGATCGGTCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCGAT
66 GGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCAGTCCAAT
* *
17258646 CTTAGACTGAGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACAAGTGGGCGGGCAGGCAGG
131 CTTAGACTGAGAATGAACTTCATATGCCTAAGCCAACCGATGAAACAAGTGGGCGGGCAGGCGGG
* *
17258711 CGAGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
196 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
**
17258776 TTAGGCACATCTTCATATTTC-TGCATGCCAATGCCATTTTTATGGCTTGCCAATTCATACAATG
261 TTAGGCACATCTTCATATTTCTTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
17258840 GTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTA
324 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTA
* * * * ** *
17258905 GAAACTTTTTACGGTTCGGGATTTTTCAAAAAATTTTCGGAAA-GATTTTTGGCCCCAAACTTGG
389 GAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGA-TTTTAGCCCCAAACTTGG
* *
17258969 TAGAAC-TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTA
452 TAG-ACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTA
* *
17259033 CAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCA
516 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
17259098 AACCTGTAAAACCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGG
581 AACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGG
* * * *
17259163 GGCCAATATAAGGGCCAAGTACCAGCACCC-TCCGGCCCCCTCGATCGTCG-G-A-ACCCTAATG
646 GGCCAATATAAGGGCCAAGTACCAGCACCCAT-C-G-CACATC-AT-GT-GTGCACACCCCAAGG
* * * * * *
17259224 -CCGCCG-G-TCAG-GTTCT-CCG-A-CGAT-GCTCC-G-ACGATGGTGCCCTGGGGAA-GAAAA
705 CCCCCCGAGCCCAGAGTGCTGCCGCACCCATCGCTCCGGTACGATCGTGCACT-GGGAATG--AA
*
17259278 ATTCG-ACACCAGA
767 ATCCGTA-ACC-GA
* * * *** * *
17259291 ACATGCCTGAGCCCACGAAAGGAGCGTGCGGGTGGTCAGCCGGTC-GAGGGACGAGATGCGCAAG
1 A-A-G--TCAACCCACGAAAGGAGCGTGCAGGCACTCAACCGGCCAGAGGGACGAGATGCGCAAG
* * * * * **
17259355 CTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTACTACCGTAACCCTTGGTCTGGTC
62 CTGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCAGTC
* * * * *
17259420 CAATTTTAGACTGGGAATGAAC-TCTATATGCCTAAGCCAACTGATGGAACGAGCGTGCGGGCGG
127 CAATCTTAGACTGAGAATGAACTTC-ATATGCCTAAGCCAACCGATGAAAC-A-AGT--GGGCGG
* * * * *
17259484 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGTCGTGGATCGATAAGGTGG
187 GCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
17259549 TAGGTGGGTGTAGGCACATCTTCATATTTCTATGTGCGAATGCCACTTTTATGGCTTGTAAATTC
252 TAGGTGGGTTTAGGCACATCTTCATATTTCT-TGTGCCAATGCCATTTTTATGGCTTGTAAATTC
17259614 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
316 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
* * * *
17259679 CGATTTTTGAAACCTTTTGCTGTTCGAGATTTTTTTAAATTTTTTCGAAAGGAGTTTTAGCCCCA
381 CGATTTTAGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGA-TTTTAGCCCCA
* *
17259744 AACTTGGTAGCCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
445 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAA
* *
17259809 AGTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTG
510 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
17259874 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGG
575 GCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGA
* * * * *
17259939 ATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACAACAAGTGCGCACACCCC
640 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCC
17260000 TCCGACCCCC
Statistics
Matches: 1283, Mismatches: 158, Indels: 80
0.84 0.10 0.05
Matches are distributed among these distances:
772 10 0.01
773 7 0.01
774 142 0.11
775 18 0.01
776 2 0.00
777 8 0.01
778 119 0.09
779 32 0.02
780 9 0.01
781 9 0.01
782 451 0.35
783 447 0.35
784 12 0.01
785 10 0.01
786 3 0.00
787 3 0.00
788 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (778 bp):
AAGTCAACCCACGAAAGGAGCGTGCAGGCACTCAACCGGCCAGAGGGACGAGATGCGCAAGCTGA
GGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCAGTCCAAT
CTTAGACTGAGAATGAACTTCATATGCCTAAGCCAACCGATGAAACAAGTGGGCGGGCAGGCGGG
CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTAGA
AACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTAGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCAAGGCCCCCCGAGCC
CAGAGTGCTGCCGCACCCATCGCTCCGGTACGATCGTGCACTGGGAATGAAATCCGTAACCGA
Found at i:17260176 original size:26 final size:26
Alignment explanation
Indices: 17260147--17260199 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17260137 TCGGTCCGCT
17260147 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
17260173 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
17260199 C
1 C
17260200 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:17261773 original size:26 final size:26
Alignment explanation
Indices: 17261737--17261789 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17261727 CTGGTTCGAT
*
17261737 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
17261763 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
17261789 C
1 C
17261790 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:17264685 original size:26 final size:26
Alignment explanation
Indices: 17264648--17264700 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17264638 TTTGACTTAG
* *
17264648 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGACTAA
17264674 GCATACGAAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
17264700 G
1 G
17264701 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:17265001 original size:889 final size:883
Alignment explanation
Indices: 17263896--17265585 Score: 2492
Period size: 889 Copynumber: 1.9 Consensus size: 883
17263886 GAGCATCGCT
* * *
17263896 GGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGAGGGCCTAGAGGGTTGTGTGCACAT
1 GGAGAACCAGACCGACGGCATTAGGGTTCCGGCGATCGGGAGGG-CTAGAGGGGTGTGCGCACAT
* * * *
17263961 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAG
65 GATGTGCGATGGGTGCTGATACCTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGAA
17264026 CTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT
**
17264091 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTGAGCTGAATT-
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCAAGTTTTGAGCTGAATTC
* * * *
17264155 TTTCTATGCATGCTATCAAAAATACAAGGATCAAGTCCACCATGTTTCGGGCCAAAACTCCTTTC
260 TTT-TATGCATGCCAACAAAAATACAAGGATCAAGTCCACCAAGTTTCGGGCCAAAACTCCTTCC
* *
17264220 GAAAAAATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGT
324 GAAAAAATTTAAAAAAATCTCAAACCCTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGT
*
17264285 CGTCTTGCCAAGAAACTTCACGTGAAGGATTAAGGGACCAATGTATGAATTTACAAGCCATAAAA
389 CGTCTTGCCAAGAAACTTCACATGAAGGATTAAGGGACCAATGTATGAATTTACAAGCCATAAAA
* *
17264350 ATGGCATTGGCTCATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGA
454 ATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCAATC-ATCCACGA
* *
17264415 CTTGCATATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGCCCGCCTGCTCGTTTCGTCT
518 CTTGCACATCCCGTCTCTCTGGCCGGCATAGTG----CCCGCCCG--C-CC-GCTCGTTTCGTCA
**
17264480 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTAGACCG-AGGGCTACGGTAG
575 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTAGA-CGAAGGGCTACAATAG
* * * * * ** *
17264544 CAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATTCTCGGCTTGCGCATCCCGTCCCTCTGGT
639 CAGGAACGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGC
* * *
17264609 CGACTGAGTGCCCGGA-GCTCCTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
704 CGACTGAGTGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* *
17264673 AGCATACGAAGTTCATTCCCAGACTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATACTGC
769 AGCATACGAAGTTCAATCCAAGACTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATACTGC
17264738 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTACCATCATC
834 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTACCATCATC
* * *
17264788 GGAGAACCAGACCGACGGCATT-GGGTTCCGGCTATCGAGG-GGG-TCGGGGGGTGTGCGCACAT
1 GGAGAACCAGACCGACGGCATTAGGGTTCCGGCGATCG-GGAGGGCTAGAGGGGTGTGCGCACAT
* *
17264850 GATGTGTGATGGGTGCTGATACCTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTTGAGAA
65 GATGTGCGATGGGTGCTGATACCTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
17264915 CTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
17264980 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTC
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCAAGTTTTGAGCTGAATTC
* ** *
17265045 TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCG
260 TTTTATGCATGCCAACAAAAATACAAGGATCAAGTCCACCAAGTTTCGGGCCAAAACTCCTTCCG
* * ** *
17265110 AAAAAATTTAAAAAAATTTCAAACCGTAAAAAGTTTTTAAAATCGTGAAAAATAGAAAACGAGTC
325 AAAAAATTTAAAAAAATCTCAAACCCTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTC
** * * **
17265175 GTCTTGCCATTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTTATAAAAA
390 GTCTTGCCAAGAAACTTCACATGAAGGATTAAGGGACCAATGTATGAATTTACAAGCCATAAAAA
* * * *
17265240 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCATCCATGGCT
455 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCAATCATCCACGACT
* ** **
17265305 TGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCTTGCCCGCTCGTTTCGTCAGTTGGCTTAG
520 TGCACATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* * ** * *
17265370 GCATACGGAGTTCATTCCCAGTTTAAGATCGGAGTAGACGAAGGGCTGCAATAGCAGGAACGACA
585 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACTAGACGAAGGGCTACAATAGCAGGAACGACA
* *
17265435 GCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGTATCCCACCCCTCTGGCCGACTGAGTGC
650 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGTGC
* * *
17265500 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCTAAGCATACGGAG
715 CCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAG
*
17265565 TTCAATCCAAGTCTAAGATCG
780 TTCAATCCAAGACTAAGATCG
17265586 TCGGAGAACC
Statistics
Matches: 713, Mismatches: 81, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
879 2 0.00
880 135 0.19
881 74 0.10
882 1 0.00
884 6 0.01
888 35 0.05
889 417 0.58
890 3 0.00
891 17 0.02
892 23 0.03
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (883 bp):
GGAGAACCAGACCGACGGCATTAGGGTTCCGGCGATCGGGAGGGCTAGAGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGATACCTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCAAGTTTTGAGCTGAATTCT
TTTATGCATGCCAACAAAAATACAAGGATCAAGTCCACCAAGTTTCGGGCCAAAACTCCTTCCGA
AAAAATTTAAAAAAATCTCAAACCCTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCG
TCTTGCCAAGAAACTTCACATGAAGGATTAAGGGACCAATGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCAATCATCCACGACTT
GCACATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGG
CATACAGAGTTCATTCCCAGTCTAAGATCAAACTAGACGAAGGGCTACAATAGCAGGAACGACAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGTGCC
CGCACGCTCCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGT
TCAATCCAAGACTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATACTGCGCTCGGGCATGT
GCTGGTGCCACATTTTTCTTCACCGGGGTACCATCATC
Found at i:17265565 original size:26 final size:26
Alignment explanation
Indices: 17265529--17265581 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17265519 GTTGACTTAG
*
17265529 GCATACAGAGTTCATTCGC-AGTCTAA
1 GCATACAGAGTTCAATC-CAAGTCTAA
*
17265555 GCATACGGAGTTCAATCCAAGTCTAA
1 GCATACAGAGTTCAATCCAAGTCTAA
17265581 G
1 G
17265582 ATCGTCGGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCAAGTCTAA
Found at i:17269164 original size:862 final size:866
Alignment explanation
Indices: 17267082--17270481 Score: 4286
Period size: 862 Copynumber: 3.9 Consensus size: 866
17267072 GATTGGCTTA
* *
17267082 GGCATACGGAATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATACTGG
1 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGG
* * *****
17267147 CCTCGAGCATGTGCAGGTATTGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTTGCAG
66 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA-C--CATC--AGCA-CG--G-AG
* * *
17267212 AACCTGATCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
122 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
17267275 GCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCAATCCCTCATCAAACCTTGAGAACTCA
187 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17267340 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
252 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17267405 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
317 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17267470 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCGTTGCGAAAA
382 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTTCCAAAA
** * * * *
17267535 AACGTT-AAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATATAAAACT-CGTCGT
446 AAATTTAAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-TGAGTCAT
* *
17267598 CTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATG
510 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
17267663 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
575 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
* * * * * *
17267728 GCGCATCCCATCTCTCTGGCGGGTGTAGTTCTCGCCTGCCCGCCCGTCCGCTCATTTCATCGGTT
640 GCGCATCCCGTCTCTCTGGCCGGCGTAG---T-GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTT
** ** * *
17267793 ATCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGG
701 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGG
* * * * *
17267858 ATCGATAGCATGCAGAGGGGGACCCGATCTG-TCCCC-GACTTGCACATCCTACCCCTCTGGCCG
766 ATCGACAGCATGCAGAGGGGGACCTGA-CTGATCCCCAG-CTTGCGCATCCAACCCTTCTGGCCG
* * *
17267921 GCTGAGCGCCCGCACGCTCATTTCATGGGTTGA-CTTA
829 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGATCTTT
* * * *
17267958 GGCATACGAAGCTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGAAGCACATGCTGG
1 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGG
* * **
17268023 GCTCGAGCATGTGCTGGTGTCACATTTTTCTTCGTC---GAAGTATCA-C-CGGAGAACCTGACC
66 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAGCACGGAGAACCTGACC
* * * *
17268083 GGCGGCATTGGGGTACTGACGATCGGGGGGGCCGGGCGGGGTGTGCGC-CGATGATGTACGATGG
131 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCAC-ATGATGTGCAATGG
* * *
17268147 GTGCTGGTAGTTAGCCCTGATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * * *
17268212 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGCAGCCTTTAAAGTGTTTGAATTGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
17268277 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
17268342 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAATTTAA
389 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAATTTAA
* * *
17268407 AAAAATCCTGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATG
454 AAAAATCCTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATG
*
17268471 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** **
17268536 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT-CC
584 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
*** *
17268600 GTCTCTCTGATAGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
649 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * *
17268665 GGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGCGGTAGCAGGATCGGCAGCATGC
714 GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCATGC
* * * * *
17268730 AGAGGGGGACCTGCCCGATCCCCAGCTTGCGCATCCAACCCTTCTGGCCGGTTGACCGCCCGAAC
779 AGAGGGGGACCTGACTGATCCCCAGCTTGCGCATCCAACCCTTCTGGCCGGCTGAGCGCCCGCAC
17268795 GCTCGTTTCGTGGGTT-ATCTTT
844 GCTCGTTTCGTGGGTTGATCTTT
* * *** *
17268817 GGGATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTTGCAGCACATGCTGG
1 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGG
* ** *
17268882 GCTCGAGCAAGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCA-C-CGGAGAACCTGACG
66 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAGCACGGAGAACCTGACC
** **
17268945 GGCGATATTGGGGTTCTAACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCAATGGG
131 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCAATGGG
* **
17269010 TGCTGGTACTTGGCCCTTAT-TTCGGCCCCCTGTCCCTCATCAAACCTATAGAACTCACACCCCC
195 TGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * *
17269074 TTAAAGAGCATTTGAGATTTCACAGCTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGAAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
17269139 ACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
17269204 CCAAAAAAAATA-ATAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-TCTTCCAAAAAAATTT
389 CCAACAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCT-TTCCAAAAAAATTT
*
17269267 AAAAAAATCCTGAACTGCACAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCA
452 AAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCA
* * *
17269332 TGAAGCTTCACGTGAAAGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
17269397 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACAGCTTGCGCATC
582 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATC
* * * ** * *
17269462 TCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCTGCC-CACCAACTCGTTTTGTCAGCTGGCTTA
647 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--CCGC-CC-GCTCGTTTCATCGGTTGGCTT-
* * * *
17269526 AGG-ATACAGAGTTCATTCCAAGTGTAAGATCCA-A-CGGATCGAGGGTTGCGGTAGCAAGATCG
706 AGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCGGATCGAGGGTTGCGGTAGCAGGATCG
* * * *
17269588 ACAGCACGC-GTAGGGGGACCTGACTGATCCCTAGCTTACGCATCCCACCCCTT-TGGCCGGCTG
770 ACAGCATGCAG-AGGGGGACCTGACTGATCCCCAGCTTGCGCAT-CCAACCCTTCTGGCCGGCTG
**
17269651 AGCGCCCGCATACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATT
833 AGCGCCCGCACGCTCGTTTCGT-GG--G--TT--G-AT-C-----T--TT
* * **
17269701 CCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGTAGC
1 ----G-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGC
* * * ** *
17269766 ACATGCTGGGCTTGGGCATGTGCTAGTGCCACATTTTTCTTCACCGGGCCACCATCATCGGTGCA
57 ACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA-----GCA
* * *
17269831 TCGATGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGTGTACGC
117 -C---GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
* * *
17269896 ACATGATATGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTC
178 ACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
17269961 GAGAACTCACACCCCCTTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
243 GAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
17270026 GTGTCTGAAATGGGGACACTTTTTTTGAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGC
307 GTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
17270091 TGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACT
371 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * * * * * *
17270155 CCTTCCGAGAAAACTTTACAAAATTTC-AAACAGCAAAAAGTTTCAAAAATTATGAAAAATAAAA
436 CTTTCC-AAAAAAATTTAAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
17270219 AACGAGTCATCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
500 AATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
17270284 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTAT-TA
565 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
** * * ** *
17270348 TCCTTAGCTTACGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCATCCGCCCGTTCGTTTCA
630 TCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCA
* * * * *
17270413 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGC
695 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGT
17270478 AGCA
760 AGCA
17270482 CATGCTGGCC
Statistics
Matches: 2199, Mismatches: 250, Indels: 126
0.85 0.10 0.05
Matches are distributed among these distances:
858 3 0.00
859 252 0.11
860 2 0.00
861 4 0.00
862 358 0.16
863 185 0.08
864 193 0.09
865 279 0.13
866 2 0.00
867 93 0.04
868 53 0.02
869 5 0.00
870 4 0.00
872 2 0.00
873 2 0.00
876 91 0.04
877 1 0.00
882 1 0.00
884 2 0.00
888 1 0.00
893 97 0.04
898 4 0.00
899 41 0.02
900 23 0.01
901 2 0.00
903 126 0.06
904 293 0.13
905 80 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (866 bp):
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGG
GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAGCACGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAATTTAAAA
AAATCCTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAG
AGGGGGACCTGACTGATCCCCAGCTTGCGCATCCAACCCTTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGATCTTT
Found at i:17269716 original size:26 final size:26
Alignment explanation
Indices: 17269685--17269737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17269675 GTTGACTTAG
17269685 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
* **
17269711 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
17269737 G
1 G
17269738 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:17273042 original size:26 final size:26
Alignment explanation
Indices: 17273006--17273056 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17272996 TGACTTAGGC
17273006 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
*
17273032 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17273057 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:17273947 original size:26 final size:26
Alignment explanation
Indices: 17273918--17273970 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17273908 GTTTACTTAG
*
17273918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
17273944 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
17273970 G
1 G
17273971 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:17276033 original size:863 final size:866
Alignment explanation
Indices: 17270415--17278895 Score: 8826
Period size: 863 Copynumber: 9.7 Consensus size: 866
17270405 TCGTTTCATC
* *
17270415 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGA-TCGGACCGAGGGTTACGG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTCAGACCGAGGGTTACGG
* * * * *
17270477 CAGCACATGCTGGCCTCGGGCATGTGCTGGTGTCGCATTTTTCTTTACCGGGGCACCATCGTCGG
66 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA---TC-G
* * * *
17270542 AGCATCATCGGAGAACCTGACCAGCGGCATTGGGGTCCCGACGATC-GGGGGG-TCGGGGGGTGT
127 -G----ATCGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGT
* * * *
17270605 GCGCACATGATGTGCAATGGGTGCTGGTATTTGGCCCTTATACTGGCCCCCAATCCCTCATCAAA
187 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
17270670 CCTTGAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
252 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
17270735 AAAGTGTCTGGAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
317 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
17270800 GCTGAATTTTTTTGTACAAGCCAACAAAAATACAAGGATCACATCTACGAAGTTTGGGGCCAAAA
382 GCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
17270865 CTCCTTCCGAAAAAATGTTAAACAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
447 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* * *
17270930 AAACAAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAG
512 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * * *
17270995 TCATAAAAATGGCATTGGCTCACAGAAATATGAAGATGTGCCTAAACCCACTTACCACACTATCG
577 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
** * * * * * * *
17271060 ATCCGTGGCTTGCACATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCTGCCCGCCCGCTCATTTC
642 ATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTC
* * * *
17271125 GTCGGTTGGCTTAGGCGTACGGAGTTCATTCCTGGTCTAAGATCGGACCGGGCCGAGGGTTGCGG
706 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* * * *
17271190 CAGCAGGATCGGCAGCATGCAGAGGGGGA-CCTACCCGATCCCCGGCTTGCACATCCAAC-CCCT
771 CAGCAGGATCGGCAGCATGCAGAGGGGGACCCGA-CCGATCCCTGACTTGCGCATCC--CGCCCT
* * * * *
17271253 CTGGCCGGTTTAGCGCCCGAACGTTAATTTCGTG
833 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
* ** * * * * **
17271287 GTTTCTCTTTGGCATACGGAGTTCATTCCCAGTCTAA-CAT-CCGAC-CGGATCGAGGGTTGTGG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTCAGACCGAGGGTTACGG
*** * *
17271349 CAGCACATGCTGGGCTCGAGCATGAAATGGTGCCACATTTTTCTTCATCGGGGCACCATC--ACC
66 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGGATC
* * * * * *
17271412 GGCGAACTTGATCGG-GAGCATTGGGGTTCCGACGTTCGGGGGAGCCGGTGGGGGCTGTGCACAC
131 GGAGAACTTGACCGGCG-GCATTGGGGTTCCGACGATCGGGGGGGCTGG-GGGGG-TGTGCGCAC
* * * *
17271476 ATAATGTGTGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCTTATCCCTCATCAAACCTCGA
193 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
17271541 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCACTAAAGTG
258 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
17271606 CCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGAA
323 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
17271671 TTTTTTGGTACATGCCAACAAAAATAAAAGGATCTCATCTACCAAGTTTGGGGCCAAAACTCCTT
388 TTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
17271736 CCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
453 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
17271801 GTC-TCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
518 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * * *
17271865 AAATTGCACTGACATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCAC
583 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** *
17271930 GGCTTGCGCATCCTATCTCTCTGGCCGGTGTAGTGCCCGCCCG--C-CAACTCGTTTCGTTGGTT
648 GGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTT
* * ** *
17271992 GGCTTAGGCATACGGAGTTCATTCCTAGTCTATGAAT-AGACCAGATTGAGGGTTGCGGCAGTAG
713 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAG
* ** * *
17272056 GATCGGCAGCATGCAGAAGGGGACCCGGTCGATCCCCGACTTGCGCAACCCGCCCCTCTGGCCGG
777 GATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCTGACTTGCGCATCCCG-CCCTCTGGCCGG
* * * *
17272121 TTGAGCACCAGCACGCTCGTTTCGTG
841 CTGAGCGCCCGCACGCTCATTTCGTG
* * * * * *
17272147 GGTTGACTTAGGCATACAGAGTTCATTTCCAGTCCAAG-AT-CAGA-T-AGGACCGAGTGTTGCG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTCA-GACCGAGGGTTACG
* * * * * * *
17272208 GCAGCACATGCTGGGCTCGAGCATCTACTGATGTCGTATTTTTCTTCACCGAGGCACCATC-G-T
65 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGGAT
* * * * * * *
17272271 CGGAGAACTTGACCAGCGGTATTGGGGTTCCGATGATCGGGAGGGCCAGGGGGGCTGTGCGGACA
130 CGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGGCTGGGGGGGTGTGCGCACA
* * * *
17272336 TAATGTGCGATGGGTGCTGGTACATGGACCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAG
194 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
17272401 AACTCACACCCTCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
259 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
17272466 CTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
324 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
** *
17272531 TTTTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
389 TTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* *
17272596 CGAAAGAATTTTAAAAAATCCTGAACC-------G--T-AAAAATCGTGAAAAATAGAAAACGAG
454 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
17272651 TCGTCTTGTCATGAAACTTCACGTGGAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAA
519 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
17272716 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACG
584 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
17272781 ACTTGCGCATCCCGTCTCTTTGGCCGGCGTAGT----GCCCG--C-CCGCTCGTTTCGTCGGTTG
649 GCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTG
* * * * * * **
17272839 GCTTAGGCATATGGAGTTCATTCCCT-GTCTAAGACCAGATCGGACTGAGGGTTACGACAATAGG
714 GCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * * * **
17272903 ATCAGCAACACGCAGAGGGGGACCC-AGCCGATCCCTGGCTTACGCATCCCGCCCCTCTGGTAGG
778 ATCGGCAGCATGCAGAGGGGGACCCGA-CCGATCCCTGACTTGCGCATCCCG-CCCTCTGGCCGG
* * ** *
17272967 CTGAGCGCCCGAACACTTGTTTTGTG
841 CTGAGCGCCCGCACGCTCATTTCGTG
*
17272993 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCTCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-G-G---------A--C-----
* * * * *
17273058 TCAGACCAGACCAAAGGTTGCAGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTAT
48 TCAGACC-G----AGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
* **
17273123 CTTCGTCGGGGCACCATCGTTGGAGCATCGCCAGAGTATTACCGGAGACCCTGACTAGCGGCATT
108 CTTCATCGGGGCACCATC----G-G-ATCG---GAG-A--A-C-TTGA-CC-G----GCGGCATT
* * * * *
17273188 GGGGTTTCGACGATCGGAGCGGCT-GGGGGGTGTACGCACATGATGTGCGATGGGTGCTAGTACT
153 GGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
17273252 TGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
218 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
17273316 TTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTCTCTGAAAATGGGGACACCTTTTTCA
283 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCA
* * *
17273381 AATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
347 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAA
* * ** *
17273446 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTCCCGAAAGCATTTTAAAAAATCTCG
412 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * *
17273511 AACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGCCTTGCCATTAAACTTCACG
477 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
17273576 TGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATA
542 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * * * *
17273641 TGAAGATGTGCCTAAACCCACCTACCATCCTATCAATCCATGGCTTGCGCATCCCGCCTCTCTTG
607 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGG
* * * *
17273706 TCGGTGTAGTACACGCCCACTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
672 CCGGCGTAGT----GCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *** *
17273771 CATTCCTAGTCTAAGATCAGATCGGACCAAGGGTTGTGGCATCAGGATTGGTAGCACATAGAGTG
732 CATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGG
* * * * * *
17273836 AGATCCGACAGATCCCCGGA-TTGCGCATCCCGCCCGTCTGGCCAGCTGAGCGCCCGCACGCTCG
797 GGACCCGACCGAT-CCCTGACTTGCGCATCCCGCCC-TCTGGCCGGCTGAGCGCCCGCACGCTCA
*
17273900 TTCCGTG
860 TTTCGTG
*
17273907 GGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG-----------A--C-----
* * * * *
17273972 TCAGACCGAACCAATGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTCCTGGTGCCGCATTTTT
48 TCAGACCG-----AGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
* * * * *
17274037 CTTCGTCGGGGCACCATCACCGAAGCATTATCGGAGAACCTGATCGGAGGCATTGGGGTT-CAAG
108 CTTCATCGGGGCACCAT---CG--G----ATCGGAGAACTTGACCGGCGGCATTGGGGTTCCGA-
* * * **
17274101 CGAT-TGGGGGGC-CGGGGGATGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTAT
163 CGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
17274164 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTT
228 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * *
17274229 ATAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGAAATGGAGACAC-TTTTTCAAATGGTCACAA
293 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * ** * *
17274293 AATGTAGTATGCTTCAAGTTTTTAGCTGAATATTTTTT-TGCATGCCAAC--AAA-A-AA--A-C
358 AATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTACATGCCAACAAAAATACAAGGATC
* * * *
17274350 A-AT-T----A---T-----C---ACGCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAA
422 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * *
17274398 AGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTA
487 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
** *
17274463 AGGGACTGTTGTATGAATTTACAAGTCATAAAAATGGCATTGGCAC-CTAGAAATATGAAGATGT
552 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC-AGAAATATGAAGATGT
* * * * *
17274527 GCCTAAACCCACTTACCACACTATTGATCCATGGCTTGCGCATCTTGTCTCTCTGGCCGGCGTAG
616 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAG
* * * * *
17274592 TGCCCGCCCGTCCACCTGCTCATTTCGTCAGTTGGCTTAGGTATACGGAGTTCATTCCTAGTCTA
681 TGCCCGCCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
* * * * *
17274657 AGATCAGATCGGATCGAGGGTTGCAGTAGCAGGATCGGCAGCATGCAGA-GGGG-CCTGACCG-T
745 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGAT
* * * * * *
17274719 CCC-AAGCATTGCTCA-CAAC-CCCTCTGGCCGGTTGAGCG-CCGAATG--C-TTTCGT-
810 CCCTGA-C-TTGCGCATC-CCGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
* * * **
17274771 GGTTGTCTT-GGCATACGGAGTTCATTCCCAGTCTAAG-AT-CAGAC-CGGACCGAGGGTTGTGG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTCAGACCGAGGGTTACGG
* * * * *
17274832 CAGCACATGCTAGGCTCGAGCAAGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-G-CC
66 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGGATC
* * * * *
17274895 AGAGAACTTGACCGTCGGTATT-GGGTTCCGACGATCGGGGGAGCCGGGGGGGGCTGTGCGCACA
131 GGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GGCTGGGGGGG-TGTGCGCACA
* * * * * *
17274959 TAATGTGTGATGGGTGCTGGAAATTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTTGAG
194 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* ** *
17275024 AACTCACACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTTTCAGTAGCCATTAAAGTGC
259 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
17275089 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
324 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
17275154 GTTTTGGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTC
389 TTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
17275219 CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTCAAAAATCATGAAAAATAAAAAATGAG
454 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
17275284 TCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
519 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* **
17275349 AATGGCACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
584 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * *
17275414 GCTTACGCATCCTATCTCTCTGGTCGGTGTAGTGCCCGCCCACCCACCAACTCGTTTCGTCGGTT
649 GCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCTCGTTTCGTCGGTT
* * * *
17275479 GGCTTAGGCATACGGAGTTCATTCCCAGTCTATGAAT-AGACCAGACCGAGGGTTGCGGCAGCAA
713 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAG
* * * * * *
17275543 GATCGGCAGCATACAGAGGGGGACCCGACCGATCCCTTATTTACGCATCCTGCCCTCTGCCCGGC
777 GATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCTCTGGCCGGC
* * ** *
17275608 TGAACGCCAGCACGCTTGTTTCGTA
842 TGAGCGCCCGCACGCTCATTTCGTG
* * *
17275633 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCCAAG-AT-CGGACT-AGACCGAGTGTTACGG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTCAGACCGAGGGTTACGG
* * * * *
17275695 CAGCACATGTTGGGCTCGAGCATCTGCTAGTGCCGTATTTTTCTTCACCGGGGCACCATC-G-TC
66 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGGATC
*
17275758 GGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGGCTGTGCGGACAT
131 GGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGG-TGTGCGCACAT
* * *
17275823 AATGTGCGATGGGTGCTGGTACATGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
195 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
17275888 ACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
260 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
17275953 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
325 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
17276018 TTTTTGTATATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTC
390 TTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
17276083 GAAAAAATTTTAAAAAATTCTGAACCGTAAAAA---T------T-GTGAAAAATAGAAAACGAGT
455 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
17276138 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-AGAGCCATAAA
520 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAA
* * * *
17276202 AATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATTCACG
584 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
17276267 GATTGCGCATCCTGTCTTTCTGGCCGGCGTAGTGCCAACCTGTCCGCCCGCC-CGTCCGCTAGTT
649 GCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTG-C--CC-GCCCGCCCGCCGC-T-CG-T--TT
* * *
17276331 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCA
705 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCG
* * ***
17276396 GTAGCAGGATCGACAGCACATAGAGGGGGACCCGACCGAT-CCTCGACTTGCGCATCCCGTCCCT
770 GCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCT-GACTTGCGCATCCCG-CCCT
* *
17276460 CTGGCCGGCTGAGCGCCCGCGCGCTCATTTCATG
833 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
17276494 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG--G---A----C--TC----A
* * * * * * * * *
17276559 TTGGACCGGACCAAAGATTACGACAGCACATGCTGGGCTCGGGCTTGTGCTTGTGTCGTAATTTT
51 ---GACC-G----AGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
* * * * *
17276624 CTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTCGAT
108 CTTCATCGGGGCACCAT---CG--G-A---TCGGAGAACTTGACCGGCGGCATTGGGGTTCCGAC
*
17276689 GATCGGGGGGGCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
164 GATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
17276754 TTGGCTCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTA
229 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
17276819 CAGGTTTGTTGCCAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT-G-------
294 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
17276876 -----GTA-A--T----TTTTT---TG--------TG--CATGCCAAAAAAAATACAAGGATCAC
359 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCAC
* * * ** *
17276916 GTCTACCAAGTTTGGTGCCAAAACTCCTTTCGAAAAAATTTTAGAAAATCTTGAACCGTAAAATG
424 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
*
17276981 TTT-AGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
489 TTTCA-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
17277045 GCGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
553 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* **
17277110 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTG
618 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTG
** * * * *
17277175 CCCGCCCGCCCATTCGCTCGCTTATTTCGTCGGTTGGGTTAGGCATACGGACTTCACTCCCAGTC
683 CCCGCCCG-CC---CGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
** * ** * * *
17277240 TAAGATC-GAACTAGATCGAGGGTTGCGATAGCAGGATCGGCAGCATGCATAAGGGGACTCGACC
743 TAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACC
* * * *
17277304 GAT-CCTTAGCTTGCGCATCTCGTCCCTCTGGCTGGCTGAGCGCCCG--CGCTTATTTCGTG
807 GATCCCTGA-CTTGCGCATCCCG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
* * *
17277363 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA---C--T--CAGAC--CGA
* * * *
17277428 TCGGATTGGACCGAGGTTGCAACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTC
57 --GGGTT--A-C---G--G---CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTC
*
17277493 TTCATCGGGGCACCATCATCGGAGCATCGTTGGAGAACTTGACCGGTGGCATTGGGGTTCCGACG
109 TTCATCGGGGCA-C--CATC-G-G-ATC---GGAGAACTTGACCGGCGGCATTGGGGTTCCGACG
* * ** *
17277558 ATC-GAGGGTC-CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATAT
165 ATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
17277621 TAGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTAC
230 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
17277686 AGGTTTGCTCCCAGTAGCCATTAAAGTATCT-AAAGTAGGGATACTTTTTTCAAATGGTCACAAA
295 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAA
* ** *
17277750 ATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGGGCATGCCAACAAAAAATACAATGATCA
359 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAAC-AAAAATACAAGGATCA
* ** **
17277815 AGTCTATGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAATCTCCCGAACCGTAAAAA
423 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
** * * *
17277880 GTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATCAAGGCTTAA
488 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
17277945 GCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
553 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * * *
17278010 CTAAACCCACCTACCACCCTATCGATCGACGGCTTACGAAT-CTCGTTTCTCTGGCAGGCGTAGT
618 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT-GTCTCTCTGGCCGGCGTAGT
* * * * * *
17278074 TCTCGCCCG--C-CCGCTCGTTTCGTCAGTTGGCATAGGCATACAGAGTTCATTCCCAGTCTAAG
682 GCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
* ** * **
17278136 ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCATGCAGAGGGGGAACCGGTCGATCC
747 ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCC
** * * *
17278201 C-GGTTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCACTCGAACGCTCATTTCGT-
812 CTGACTTGCGCATCCCGCCC-TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
* *
17278255 GGTTGACTTAGGCAAACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-G-G---A----C--TC-----
* * *
17278320 TTAGACCAGACCAAGGGTTACGGTAGCACATGCTAGGCTC-AGGCATGTGCTGGGGCTC-CA-TT
50 --AGACC-G----AGGGTTACGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGC-CGCATTT
* * * * *
17278382 TTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCAGCGACATAGGGGTTCCG
106 TTCTTCATCGGGGCACCAT---C-G-G-AT---CGGAGAACTTGACCGGCGGCATTGGGGTTCCG
*
17278447 ACGATCGGGGGGG-T------GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
162 ACGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
17278505 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTT
227 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
17278570 TATAGGTTTGCTGCCAGTAACCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
292 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
17278635 AAATCTTGTACACTTCAATTTTTTAGCTGACTTTTTTTGTACATGCCAACAAAAATAAAAGGATC
357 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATC
** *
17278700 ACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
422 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * *
17278765 AGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTA
487 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* ** * *
17278830 AGGGACCATTGTATCAATTTA-AATGCTGTAAAAATGGCATTGGCACGTAGAAATATAAAGATGT
552 AGGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
17278894 GC
616 GC
17278896 TAGTAGCCAT
Statistics
Matches: 6440, Mismatches: 840, Indels: 644
0.81 0.11 0.08
Matches are distributed among these distances:
825 9 0.00
826 23 0.00
827 2 0.00
828 5 0.00
829 145 0.02
830 54 0.01
831 1 0.00
832 3 0.00
833 1 0.00
834 3 0.00
836 1 0.00
837 63 0.01
838 1 0.00
839 1 0.00
842 6 0.00
843 1 0.00
845 1 0.00
846 177 0.03
847 5 0.00
848 2 0.00
849 27 0.00
850 148 0.02
851 1 0.00
852 2 0.00
853 163 0.03
854 307 0.05
855 8 0.00
856 15 0.00
857 35 0.01
858 9 0.00
859 281 0.04
860 381 0.06
861 116 0.02
862 18 0.00
863 443 0.07
864 260 0.04
865 319 0.05
866 158 0.02
867 13 0.00
868 93 0.01
869 75 0.01
870 11 0.00
871 146 0.02
872 163 0.03
873 95 0.01
874 174 0.03
875 3 0.00
876 2 0.00
877 208 0.03
878 1 0.00
879 4 0.00
880 5 0.00
881 1 0.00
882 5 0.00
883 5 0.00
884 4 0.00
885 3 0.00
886 190 0.03
887 258 0.04
888 6 0.00
889 7 0.00
890 4 0.00
891 117 0.02
892 377 0.06
893 54 0.01
894 27 0.00
895 2 0.00
896 3 0.00
897 161 0.03
898 55 0.01
899 13 0.00
900 252 0.04
901 55 0.01
902 247 0.04
903 106 0.02
904 4 0.00
906 1 0.00
907 1 0.00
908 1 0.00
909 2 0.00
910 4 0.00
911 1 0.00
912 2 0.00
913 10 0.00
914 264 0.04
915 5 0.00
917 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (866 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTCAGACCGAGGGTTACGG
CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGGATC
GGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
GGCAGCATGCAGAGGGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCATTTCGTG
Found at i:17276535 original size:26 final size:26
Alignment explanation
Indices: 17276505--17276557 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17276495 GTTGACTTAG
17276505 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17276531 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17276557 G
1 G
17276558 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17277411 original size:26 final size:26
Alignment explanation
Indices: 17277374--17277426 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17277364 GTTGACTTAG
17277374 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17277400 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17277426 G
1 G
17277427 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17280407 original size:26 final size:26
Alignment explanation
Indices: 17280371--17280423 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17280361 ATTGACTTAG
*
17280371 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17280397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17280423 G
1 G
17280424 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17281293 original size:26 final size:26
Alignment explanation
Indices: 17281254--17281306 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17281244 GATGACTTAG
*
17281254 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
17281280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
17281306 G
1 G
17281307 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:17281678 original size:895 final size:893
Alignment explanation
Indices: 17279495--17286359 Score: 8002
Period size: 895 Copynumber: 7.6 Consensus size: 893
17279485 GTTGACTTAG
* * * * *
17279495 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGACAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAG-
** * **
17279560 GC-CCAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGTCGGAG
** * * * * * *
17279624 AACCTGACCGGTGACATTGGGGTTCC-AGTGATCGAAGGGGTCGGAGGGGGTGTGCACACATTAT
129 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCG--GGGGGCCG-GGGGGTGTGCGCACATGAT
* * *
17279688 GTGCGATGGGCGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACT
* * *
17279753 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
17279818 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
17279883 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTGCCATGTTTGGGGCCAAAAATCCTTCCGAA
385 TTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCTTTCCGAA
* * * *
17279948 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATG-AAAATAGAAAATGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGT
*
17280012 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
17280077 GCATTGGCATGTAGAAATACGAAGATTTGCCTAAACCCACCTACCACCCTAT-AATCCATGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
17280141 GCGCATCCCGTCTCTCTAGTCGGCGTGGTGCCCGCCCGCCCGCCTGTCGCTCATTTCATCGATTG
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCG-C--TCG----TTTCGTCGGTTG
* * ** * * *
17280206 GCTTAGGTATACGGAGTTCATTCCCATTCTAAGATTTGACCGGACAGAGGGTTGTGGCAGTAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGA
* * * * * * *
17280271 TCGGTAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCTGGTT
768 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
17280336 GAGCGCCCGCACGCTCTTTTCGTGGATTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
833 GAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
17280397 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *** *
17280462 CTCGAGCATGTGGTGGTGCAAAATTTTTCTTCGTC-AGG---CA---C----CATCGTCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCGTCGGAGAA
* * * * * *
17280516 CTTGACCGATGGCATTGGGGTTTCGGCGATCGGGGGGTCGGGGGGGTGTGCACACATGATGTGCG
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCG
* * *
17280581 ATAGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACAC
* *
17280646 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATCGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
17280711 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
* * * * *
17280776 TATGCCAACAAAAATACAGGGATCACTTTTACCAAGTTTTGGGCCAAAACTCTTTCCGAAAAAAT
390 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCTTTCCGAAAAAAT
* *
17280841 TGTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTGTGAGAAATAGAAAACGAGTCGTCTTGC
455 TTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
17280906 CATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCAGT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*** * * * *
17280971 GGCACATAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCAATCCACAGCTTGCGAA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
17281036 TCCCATCTCTCTGGTCGGCGTAGTGCCCACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
17281101 GAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTATGGTAGTAGGATCGGCAGCATGC
715 GGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGC
* * * * * * * * *
17281166 AGAGGGGAACCCGAACGATCCCCAGCTTGCGCATCCCGCCCTTCTGGCCTGCTAAGTGCCTGTAC
780 AGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCAC
* * * *
17281231 GCTCGTTTTGTGGGATGACTTAGGCATATGGAATTCATTCCCAGTCTAA
845 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17281280 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
17281345 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGTCGGAGA
** *
17281410 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGTGCATGATATGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
17281475 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTCGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
* ** * *
17281540 CTCAGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGGAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
17281605 GGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATTTTTTTTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
* * * *
17281670 GGATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTT-TGAAAAA
389 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAC-TCTTTCCGAAAAA
* *
17281734 ATTTTAAAAAATCCTGAACTGTAAAAAGTTTTCAAAAA-TGTGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTT-AAAAATTGTGAAAAATAGAAAACGAGTCGTCT
* * * *
17281798 TGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTATTTTACAAGCCACAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
17281863 A----C--GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
17281922 ACATCCCGTCTCTCTGGCCGGTGTACTGCCCGCCCATCCGCTCTTTTCATCGGTTGGCTTAGGCA
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * *
17281987 TACGGAGTTCATTCCCAGTCTAAGATTGGATC-AGACCGAGGGTTGTGGCAGCAGGATCGACAGC
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGTGGCAGCAGGATCGGCAGC
* * * * * * * *
17282051 ATGCAGAGGGGGGCCTGGCCAATCCTCGACTTGCGCATCCCGCCCCTCTAGCCGACTGAGTGCCC
776 ACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCC
* **
17282116 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCATAGTCTAA
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17282169 GTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* *
17282234 CTCGGGCATGTGCTGGTGCCGCATTTTTC-TCTGTCGGGGCACCATCGTCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCATC-CCGGAGCATCGTCGGAG
** * * * * * *
17282298 AACCTGACCGGTGGAATTGGGGTTCC-AGCAATCGGGGGGCTGGGCGGTGTGCACGCATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
17282362 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCAT-GAGAACTCA
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCTAGAACTCA
* * *
17282426 CACCCCCTTAAAGAGCATGTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17282491 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTATTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
17282556 ATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAG-TTTGGGCCCAAAACTCTTT-CGAAA
387 TTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGG-CCAAAACTCTTTCCGAAA
* *** * * *
17282619 AAATTATAAAAAATCTTAAACCGTAAAAAGTTTCAAAAATCT-TGAAAAATAAAAAACGAGTCAT
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT-TGTGAAAAATAGAAAACGAGTCGT
* *
17282683 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGACATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
17282748 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
17282813 ACGCATCCCGTCTCTCTAGCCGACGTTGTGCCCGCCCGCCCGTCCGCTCCTTTCGTTGGTTGGCT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * *
17282878 TAGGCATACGGAGTTCATTTCTAGTCTAAGATCAGACCGAATCAAAGGTTGTGGAAGTAGGATCA
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCG
* * * * **
17282943 GCAGAACACAGAGTGGGACCC-AGCCGATCCTCGGCTTGCACATCCTACCCCTCTGGCCGGCTGA
771 GCAGCACGCAGAGGGGGACCCGA-CCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * ** *
17283007 GTGCCCGCACACACGTTTCGTGGGTTGACTTAGGAATACTGAGTTCGCTCCCAATCTAA
835 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
17283066 GCATACGGAGTTAATTCCCAGTCTAAGATTGGACC--A-GGAGGGTTACGACAGCACATGCT-GC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAG-
* * *
17283127 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATTGGGGCACCATCACCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGTCGGAG
* * *
17283192 AACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGAGCCGGGGGGTGTGCGCACATGGTGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTG
* *
17283257 CGATTGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCA
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACTCA
* *
17283321 CA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17283385 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
17283450 TTGCATTCCCAAAAAAATACAAGGATCATGCCTACCAAG-TTTGGGACCAAAAAT-TCTTCC-AA
387 TTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGG-CCAAAACTCT-TTCCGAA
* * ** *
17283512 AAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAGACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGT
17283577 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
17283642 GCATTGGCAAGCAGAAATATGAAGATTTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
17283707 ACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTCCGTCGGTTGGCTTAGG
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * *
17283772 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAGCAGGATAGGCAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAG
* * * * *
17283837 CACACAGAGGTGGACCCGGCCGATCCTCGGCTTGCTCTTCCCGCCCCTCTGGCCGGCTGA-TAGC
775 CACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGT-GC
* * *
17283901 CCGCACGCACATTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAA
839 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17283956 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCTGCAACACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * * *
17284021 TTCGGGAATGCGCTGGTGCCGCATTTTTCTCCGTCGAGGCACCAT--C---G---C--CGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCGTCGGAGAA
** * * *
17284076 CCTGACCGACGGCATTGGCATTCC-AGTGATTGGAGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 CCTGACCGACGGCATTGGGGTTCCGA-CGATCGG-GGGG-CCGGGGGGTGTGCGCACATGATGTG
**
17284140 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGCGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
* * * *
17284205 ACACCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17284270 GGGGATACTTTTTTCAAATGGGCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
* * ** * * *
17284334 GTGCATGGCAAGAAAAATACAAGGATCACGTCTACCTTG-TTTGGCCCCAAAAATCCTTT-CAAA
388 -TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGG-GCCAAAACT-CTTTCCGAA
* * * *
17284397 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCT-TGAAAAATAAAAAACGAGTCG
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT-TGTGAAAAATAGAAAACGAGTCG
*
17284461 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
17284526 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCATCCTATCGATCCACGGCT
579 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
17284591 TGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGTTTAGTTCGTCGGT
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGTCCGCTCG--T--TTCGTCGGT
* * ** * ** * *
17284656 TGGCTTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCCAACCGAGGGTTACGGTAG-AA
701 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAG
* * * *
17284720 GATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGACCGG
766 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
17284785 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGTGTTCATTCCCAGTCTAA
831 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17284848 GCACACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * * *
17284913 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGGACCATCACAGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGTCGGAGA
* * *
17284978 ACCTAACCGACAGCTTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
17285043 GATGGGTGCTGGTA-------C-----TTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCAC
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACTCAC
*
17285095 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCT-AAAG
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-
* * *
17285159 TGGGGACAATTGTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
17285224 TTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCC-AAAA
387 TTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCTTTCCGAAAA
** * *
17285288 CAATTTTAAAAAAATTATAAAAATCTTGAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAA
452 -AA--TT-------TTA-AAAAATCCCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAA
*
17285353 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCC
506 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
17285418 ATAAACAATGGCATTGGCATGCAGAAATATGAAGACGTGACTAAAGCCTACCTACCACCCTATCG
571 ATAAA-AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCG
* *
17285483 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCG--C--CCGCTCGTTTCATCG
634 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCG
* * * * * * * *
17285544 GTTGGCTTAGGCATATGGAGTTCATTTCCAGTATAAGATCAGACTGGACAGAGGATTGTGGTAGC
699 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGC
* * *** *
17285609 AGGATCGGCTAGCAAGTAGAGGGGGACCCGGTTGATCCTCGGCTTGCGCATCCCACCCCTCTGGC
764 AGGATCGGC-AGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGC
*
17285674 CAGGCTGAGAGCGCCTGCACGCTCGTTTCGAT-GGTTGACTTAGGCATACGGAGTTCATTCCCAG
828 C-GGCTGAGTGC-CC-GCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
17285738 TCTAA
889 TCTAA
* * * * * *
17285743 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCGGAACTG-GGTTTGCGGGGCAGCGAGATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG-ACCGAGGGTTGC--GGCAGC-ACATG-
* * * *
17285807 CTGGGCTCAGGCATGTGCTTAGGGGTGCCACATTTGTTCTTCAGCGCGAGAGGCGGACCATCGCC
61 CTAGGCTCGGGCATGTGC-T---GGTGCCGCATTT-TTCTTC-G-TCG-G-GGC--ACCATC-CC
** * * *
17285872 GGGGGAGCGGATCACCGGGAGAACCTGACCGACGGCAATGGGGTTTCGGCGGATC--GGGGCCGG
114 ---GGAGC--ATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGAC-GATCGGGGGGCCGG
* *
17285935 GGGATGTGGTGCGCACGATGATGGTCCGATGGGTGCTGGTACTT-GCCCTGTATTATTTGCCCCG
172 GGG--GT-GTGCGCAC-ATGAT-GTGCGATGGGTGCTGGTACTTGGCCCT-TA-TATTGGCCCC-
**
17285999 CTATCCCTGGTCAAACC-CTTGAGAACTCAGCAGCCCCCCTTTAAAGAGCCAGGTTTTGAGATTT
229 CTATCCCTCATCAAACCTC-T-AGAACTCA-CA--CCCCC-TTAAAGAG-CA---TTTGAGATTT
17286063 TACAGGTTTGGCTGGCCAG-AGGCCAGTGGTAAAGTGTCTGAAAGATGGGG-CACTGGTTTTTTC
284 TACAGGTTT-GCT-GCCAGTA-GCCA-T--TAAAGTGTCTG-AA-ATGGGGACAC---TTTTTT-
* **
17286126 CAGGAGATGCCGTCACAAAAATCTTGTTACACTTCGAGTTTTTTAGCTAAATTGTTTTGCTG-AT
337 CA--A-ATG--GTCAC-AAAATCTTG-TACACTTCGAG-TTTTTAGCTGAATT-TTTTTTTGCAT
* * * * * *
17286190 GTC-AAAACAATACAAGTATCAATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAGATG
393 GCCAAAAAAAATACAAGGATC-ACGTCTACCAAGTTTTGGGCCAAAACTCTTTCCGAAAAA-AT-
* * * * *
17286254 TGTAGAAAAATTCTCGAAACCGCCAGAATAGTTTCAAAAATAGTGTGAAAAATAGAAAACGAGTC
455 TTTA-AAAAA-TCCCG-AACCG-TA-AAAAGTTTTAAAAAT--TGTGAAAAATAGAAAACGAGTC
* *
17286319 GTCTT-CCATGAAACTGTTACGTG-AGAGCTTAACGCGACCAT
513 GTCTTGCCATGAAACT-TCACGTGAAG-GCTTAA-GGGACCAT
17286360 AGCCATAAAA
Statistics
Matches: 5149, Mismatches: 616, Indels: 338
0.84 0.10 0.06
Matches are distributed among these distances:
881 1 0.00
882 33 0.01
883 360 0.07
884 155 0.03
885 211 0.04
886 6 0.00
887 130 0.03
888 556 0.11
889 557 0.11
890 544 0.11
891 24 0.00
892 258 0.05
893 201 0.04
894 492 0.10
895 578 0.11
896 20 0.00
897 215 0.04
898 13 0.00
899 18 0.00
900 109 0.02
901 42 0.01
902 177 0.03
903 44 0.01
904 9 0.00
905 1 0.00
906 2 0.00
907 1 0.00
908 2 0.00
910 7 0.00
913 5 0.00
914 11 0.00
915 5 0.00
916 29 0.01
917 12 0.00
918 5 0.00
919 17 0.00
925 1 0.00
932 7 0.00
933 15 0.00
934 10 0.00
935 2 0.00
937 5 0.00
938 8 0.00
939 2 0.00
942 19 0.00
943 4 0.00
944 8 0.00
945 1 0.00
947 10 0.00
948 2 0.00
949 7 0.00
950 1 0.00
951 5 0.00
952 2 0.00
953 7 0.00
954 5 0.00
955 7 0.00
956 1 0.00
957 18 0.00
958 21 0.00
959 64 0.01
960 56 0.01
961 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCTTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17282181 original size:26 final size:26
Alignment explanation
Indices: 17282145--17282195 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17282135 TGACTTAGGC
*
17282145 ATACAGAGTTCATTCATAGTCTAAGT
1 ATACAGAGTTCATTCACAGTCTAAGT
* *
17282171 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCACAGTCTAAG
17282196 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCACAGTCTAAGT
Found at i:17285753 original size:26 final size:26
Alignment explanation
Indices: 17285717--17285769 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17285707 GTTGACTTAG
17285717 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17285743 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17285769 G
1 G
17285770 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17288786 original size:122 final size:121
Alignment explanation
Indices: 17288525--17288875 Score: 588
Period size: 122 Copynumber: 2.9 Consensus size: 121
17288515 TCTTGTGTAG
*
17288525 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTGAAACTTTGCTTTTCAAGGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTGAAACTTTGATTTTCAAGGA
* *
17288590 AAATTGATACTTTCAACTTTTCCTTAAAAATA-TTTTTCTGGAAATTTATTTCTAA
66 AAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTCTAA
17288645 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTGGAAACTTTGATTTTCAAGG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTT-GAAACTTTGATTTTCAAGG
17288710 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTCTAA
65 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTCTAA
* **
17288767 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTTT-AAAC-TT-ATTTT-AA-GA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTGAAACTTTGATTTTCAAGGA
17288827 AAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTT
66 AAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTTGGAAATTT
17288876 TGATTTTTAT
Statistics
Matches: 222, Mismatches: 6, Indels: 9
0.94 0.03 0.04
Matches are distributed among these distances:
116 34 0.15
117 18 0.08
118 5 0.02
119 2 0.01
120 49 0.22
121 50 0.23
122 64 0.29
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.46
Consensus pattern (121 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTGAAACTTTGATTTTCAAGGA
AAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTCTAA
Found at i:17288923 original size:18 final size:18
Alignment explanation
Indices: 17288897--17288961 Score: 96
Period size: 18 Copynumber: 3.7 Consensus size: 18
17288887 TAAAGAAAAC
*
17288897 ATAATAATAAAAAAATAA
1 ATAAAAATAAAAAAATAA
17288915 ATAAAAATAAAAAAATAA
1 ATAAAAATAAAAAAATAA
* *
17288933 AGAAAAGTAAAAAAA-AA
1 ATAAAAATAAAAAAATAA
17288950 ATAAAAATAAAA
1 ATAAAAATAAAA
17288962 TAAAGATAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
17 12 0.29
18 30 0.71
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (18 bp):
ATAAAAATAAAAAAATAA
Found at i:17288947 original size:27 final size:29
Alignment explanation
Indices: 17288911--17288983 Score: 82
Period size: 27 Copynumber: 2.6 Consensus size: 29
17288901 TAATAAAAAA
17288911 ATAAATAAAAATAA-AAAAATAAAGA-AAAG
1 ATAAA-AAAAATAATAAAAATAAA-ATAAAG
17288940 -TAAAAAAAA-AATAAAAATAAAATAAAG
1 ATAAAAAAAATAATAAAAATAAAATAAAG
* *
17288967 ATAAAAAGAATATTAAA
1 ATAAAAAAAATAATAAA
17288984 TAAACCTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
26 3 0.08
27 18 0.47
28 12 0.32
29 5 0.13
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (29 bp):
ATAAAAAAAATAATAAAAATAAAATAAAG
Found at i:17288970 original size:11 final size:11
Alignment explanation
Indices: 17288892--17288972 Score: 72
Period size: 11 Copynumber: 6.9 Consensus size: 11
17288882 TTATTTAAAG
17288892 AAAACATAATAAT
1 AAAA-ATAA-AAT
*
17288905 AAAAAAATAAAT
1 AAAAATA-AAAT
*
17288917 AAAAATAAAAA
1 AAAAATAAAAT
*
17288928 AATAAAGAAAAGT
1 AA-AAATAAAA-T
*
17288941 AAAAAAAAAAT
1 AAAAATAAAAT
17288952 AAAAATAAAAT
1 AAAAATAAAAT
*
17288963 AAAGATAAAA
1 AAAAATAAAA
17288973 AGAATATTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
11 25 0.44
12 25 0.44
13 7 0.12
ACGTcount: A:0.80, C:0.01, G:0.04, T:0.15
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:17288970 original size:17 final size:16
Alignment explanation
Indices: 17288887--17288973 Score: 68
Period size: 17 Copynumber: 5.0 Consensus size: 16
17288877 GATTTTTATT
* *
17288887 TAAAGAAAACATAATAA
1 TAAA-AAAAAATAAAAA
17288904 TAAAAAAATAAATAAAAA
1 T-AAAAAA-AAATAAAAA
17288922 TAAAAAAATAA-AGAAAA
1 TAAAAAAA-AATA-AAAA
17288939 GTAAAAAAAAAATAAAAA
1 -T-AAAAAAAAATAAAAA
*
17288957 TAAAATAAAGATAAAAA
1 TAAAA-AAAAATAAAAA
17288974 GAATATTAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
16 6 0.10
17 27 0.46
18 18 0.31
19 8 0.14
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.15
Consensus pattern (16 bp):
TAAAAAAAAATAAAAA
Found at i:17288973 original size:18 final size:18
Alignment explanation
Indices: 17288897--17288973 Score: 65
Period size: 18 Copynumber: 4.4 Consensus size: 18
17288887 TAAAGAAAAC
*
17288897 ATAATAATAAAAAA-ATAA
1 ATAAAAATAAAAAATA-AA
17288915 ATAAAAATAAAAAA-ATAA
1 ATAAAAATAAAAAATA-AA
* *
17288933 AGAAAAGTAAAAAA-AAA
1 ATAAAAATAAAAAATAAA
17288950 ATAAAAAT--AAAATAAA
1 ATAAAAATAAAAAATAAA
17288966 GATAAAAA
1 -ATAAAAA
17288974 GAATATTAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
15 4 0.08
16 3 0.06
17 15 0.29
18 30 0.58
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.16
Consensus pattern (18 bp):
ATAAAAATAAAAAATAAA
Found at i:17290295 original size:158 final size:159
Alignment explanation
Indices: 17290006--17290354 Score: 506
Period size: 158 Copynumber: 2.2 Consensus size: 159
17289996 CGCCGGTCGG
* **
17290006 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTAAGGGTTACGATAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAAGAT
*
17290071 CGACAGCATGCAGAGGGGGATCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGCCCGGCTG
66 CGACAGCACGCAGAGGGGGATCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGCCCGGCTG
*
17290136 AGCGCCCGCACACTCGTTTTATGAGTTGA
131 AGCGCCCGCACACTCATTTTATGAGTTGA
** * * *
17290165 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTATGA-CGTAAGAA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAAG-A
* * *
17290229 T-GACAGCACGCAGAGGGGGA-CCGGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGC
65 TCGACAGCACGCAGAGGGGGATCC-GACCGATCCCCGACTTGCGCATCCCGCCCCTCTGCCCGGC
* * *
17290292 TGAGCGCCCGCACGCTCATTTTGTGGGTTGA
129 TGAGCGCCCGCACACTCATTTTATGAGTTGA
*
17290323 CTTAGGCATATGGAGTTCATTCCCAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17290355 CATACGAAGT
Statistics
Matches: 171, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
157 2 0.01
158 117 0.68
159 52 0.30
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAAGAT
CGACAGCACGCAGAGGGGGATCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGCCCGGCTG
AGCGCCCGCACACTCATTTTATGAGTTGA
Found at i:17291266 original size:26 final size:25
Alignment explanation
Indices: 17291236--17291287 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
17291226 GTTGACTTAG
17291236 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCA-TCTAA
17291262 GCATACGGAGTTCATTCCCATCTAA
1 GCATACGGAGTTCATTCCCATCTAA
17291287 G
1 G
17291288 ATCGGACCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCATCTAA
Found at i:17292192 original size:159 final size:159
Alignment explanation
Indices: 17291936--17292310 Score: 494
Period size: 159 Copynumber: 2.4 Consensus size: 159
17291926 CAGGCGTAGT
* * * * *
17291936 GCCCGC-CTGCTCATTTCGTTGGTTGGCTTTGGCAAACGGAGTTCATTCCCA-TCTAAGATAGGA
1 GCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGA
* * * * * *
17291999 CCAGATCAAGGGTTGCTGCAGCAGGATTGGCAGCATGC-AGAGGGGGATCC-GGTCAATCC-CTG
65 CCAGACCAAGGGTTGCTGCAGCAAGATCGACAGCACGCAAG-GGGGGA-CCAGATCAATCCTC-G
*
17292061 GCTTGCGCATC-CAGCCCCTCTGGCTGGCTGAAC
127 GCTTGCGCATCAC-GCCCCTCTGGCCGGCTGAAC
17292094 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGG-
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGA
* *
17292158 CCAGACCGAGGGTTGCTGCAGCAAGATCGACAGCACGCAAGGGGGGACCAGATCGATCCTCGGCT
65 CCAGACCAAGGGTTGCTGCAGCAAGATCGACAGCACGCAAGGGGGGACCAGATCAATCCTCGGCT
* * *
17292223 TGGGCATCACGCCCCTTTGGCCGGCTGAAT
130 TGCGCATCACGCCCCTCTGGCCGGCTGAAC
17292253 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17292311 CATACGGAGT
Statistics
Matches: 193, Mismatches: 17, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
158 46 0.24
159 140 0.73
160 7 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGAC
CAGACCAAGGGTTGCTGCAGCAAGATCGACAGCACGCAAGGGGGGACCAGATCAATCCTCGGCTT
GCGCATCACGCCCCTCTGGCCGGCTGAAC
Found at i:17292320 original size:26 final size:26
Alignment explanation
Indices: 17292284--17292336 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17292274 GTTGACTTAG
17292284 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17292310 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17292336 G
1 G
17292337 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17293824 original size:893 final size:897
Alignment explanation
Indices: 17292093--17299339 Score: 8433
Period size: 895 Copynumber: 8.1 Consensus size: 897
17292083 GCTGGCTGAA
* * * *
17292093 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * ** *
17292158 CCAGACCGAGGGTTGCTGCAGCAAGATCGACAGCACGCA-AGGGGGGACCAGATCGATCCTCGGC
66 CCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGA-GGGGGACCCGGCCGATCCCCGGC
* * * **
17292222 TTGGGCATCACGCCCCTTTGGCCGGCTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
17292287 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCG
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCG
* * * * * *
17292351 AGGGTTACGGTAGCACAAGCTGGGCTCGGGCATGTGCTGCTGCCACATTTTTCATCGTCGGGGCA
260 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * * **
17292416 CCATCGCCGGAGTATCACCGAAGAACCTGACC-GACGACATT-GGGATCCGGTGAT--GGGGGGC
325 CCATCGCCGGAGCATCGCCGGAGAACCTGACCGGA-GGCATTGGGGTTCCGACGATCGGGGGGGC
* *
17292477 CAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
389 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
17292542 CCC-CTATCAAAGCTCGAGAACTCACACCCCCTTAAAGGGCGTTTGAGATTTTATAGGTTTGCTG
454 CCCTC-ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
17292606 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATGTTGTACAC
518 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
** * * * *
17292671 TTCGAGTTTTTATTTGAATTTTTTTGTGCATGCCTACAAATATACAAGGATGACGTCTACCAACT
583 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
17292736 TTGGGGCCAAAACTCCTTCC-AAAATAATTTTAAAAAATCCTGAACCCTAAAAACTTT-TGAAAA
648 TTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCT-AAAA
* *
17292799 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCGTAAGGGACTATTG
711 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*** *
17292864 TATGAATTTACAAGCCATAAAAATGGCATTGGTGGGCAGAAATATTAAGATGTGCCTAAACCCAC
776 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
17292929 CTATCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGAGCC
841 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
*
17292986 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
17293051 CCAGACCGAGTGTTGCGGCAGCAGGATTGGCAGCATGCAGAGGGGGACCCGGCCGATCCTCGGCT
66 CCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT
* * * *
17293116 TACGCATCCCGCCCCT-TGGCCGGCTGAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCTT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
17293180 ACGGAATTCATTCCCAGTCTAAGCATATGGAGTTCATT-TCAGTCTAAGATCGGACCGA-ACCGA
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGA
* * * *
17293243 GGGTTGTGGTAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
261 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* *
17293308 CATCGCCGGAGCATCGCCGGAGAACCTGACCGGAGGCATTGGGGTTCTGGCGATCGGGGGGGCCG
326 CATCGCCGGAGCATCGCCGGAGAACCTGACCGGAGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* * *
17293373 GGGGGGTGTGCGCATATGATGTGTGATTGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCC
391 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
17293437 CTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGGGATTTTATAGGTTTGCTGCCC
456 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
17293502 GTAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
521 GTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
17293566 CGTGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCAACCAAGTTT
585 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
17293631 GGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCTAAAATCAT
650 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCTAAAATCAT
* *
17293696 GAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
715 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
17293761 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAATCCACCTAC
780 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
17293826 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTTGCCAGCGTAGTGCCTGCCCGC
845 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TG--C-C
* * * * *
17293886 CAGCCCACCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCGG
1 C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * * *
17293951 ACC-GAACTGAAGGTTGTGATAGCAGGATCGATAGCACGTAGAGGGGGACCCGGCCAATCCCTGA
65 ACCAG-ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGG
** * * * * * * * * *
17294015 CTTGCATATCTCGCCCCTCTTGCAGGTTGAGCGCTCGCACGCCCATTTCGTGGGTTGACATAGCC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
17294080 ATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACC
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACC
*
17294144 GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
259 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * * *
17294209 ACCATCGTCGAAGCATCGCTGGAGAACCTGACC-GACAGCATTAGGGTTCCGATGATCAGGGGGG
324 ACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGA-GGCATTGGGGTTCCGACGATCGGGGGGG
* *
17294273 CCGGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTA
388 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
17294338 TCCCTCATCAATCCTCGAGAACTCTCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
453 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
17294403 CCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCAAAAAATCTTGTACAC
518 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-
* * * * * *
17294467 CAT-AAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAACTACAAGGATCACGTCTACCAGG
582 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
17294531 TTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACTGTAGAAAGTTTCAAAAAT
647 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCTAAAAT
* *
17294596 TATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGT
712 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * * *
17294661 ATGAATTTACAAGCCATAAAAATGGAATTGGTAGGCAGAAATATTAAGATGTGACTAAACCCACC
777 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
*
17294726 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCC
842 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
*
17294782 CGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * *
17294847 CCGGACCGAGGGTTGCTGTAGTAGGATCAACAGCATGCAGAGGGGGATCCGACCGATCCCTGGCT
66 CCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT
* * **
17294912 TACGCATCCAGCCCCTCTGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
** *
17294977 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGACAGTCTAAGATCGGACC-AAACCGA
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGA
* * * * *
17295041 AGGTTGCGACAGTACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCAC
261 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * ** * * *
17295106 CATTGCCGGATCATCGTTGGAGAACTTCACCTGCA-GCATTGGGGTTCCGACGATCGGGGGGGCC
326 CATCGCCGGAGCATCGCCGGAGAACCTGACC-GGAGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
17295170 GGGGGGGGTGTGGGCACATGATGTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTAT
390 -GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
17295235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGC
454 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
17295300 TAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACT
519 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
17295365 TCGTGTTTTTAGCTGAATTTTTTT-TGCATGCCAA-AAAAATACAAAGATCACGTCAACCAAGTT
584 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
*
17295428 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-TGAAAATC
649 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCT-AAAATC
* * *
17295492 GTGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
713 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
17295557 TGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAATCCACCT
778 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
17295622 ACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTTGCCGACGTAGTGCCTGCC
843 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCC
* * * * * **
17295681 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCGTACGGAGTTCATTTCCAGCCTAAGCTTGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
17295746 CCAAACCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCT
66 CCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT
* * * * *
17295811 TACGCATCCCACCCCTCTTGCCGGTTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * ** *
17295876 ACGGAGTTCA-TCCCAGTCTAAGCATACGGAGTTAATTTCCAGTGTAAGATCAAACCG-GACTGA
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGA
* * * *
17295939 GGGTTCCGGCAGCACATACTGGGCTCCGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
261 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * *
17296004 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGGGCC-
326 CATCGCCGGAGCATCGCCGGAGAACCTGACCGGAGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* * *
17296068 GGGGGGTGTGCGCACATGATGTGCGATTGGTGCTCGTAGTTGGCCCTTATATTGGCCCCCTATCC
391 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
17296133 CTCAACAATCCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
456 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * * *
17296198 GTAGCCACTAAAGTGTCTGATATGGGGACACTTTTTTCAAAGGGTCAAAAAATCTTGTACACTTT
521 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
17296263 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
586 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
17296328 GGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCGAAAATCGTG
651 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCTAAAATCATG
*
17296393 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGA
716 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * **
17296458 ATTTACAAGCCATAAAAATAGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTTTC
781 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
17296523 ACCCTATCGATCCATGGCTTGCGAATCCCGTCTCTCTGGCCGGCGTAGTGCC
846 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* *
17296575 CGCCCGCCCACCTGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCA-TCTAAGAT
1 CGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * *
17296639 CAGACCGGATCGAGGGTTGCTGCAGTAGGATCGGCAGCATGTAGAGGGGGACCCGGCTGATCCCC
62 CAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCC
* * * **
17296704 GGCTTGCGGATCCAGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAG
127 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
17296769 GCATACGGAGTTCATTCCCAGTCCAAGATAGTGTTGGACCGAAGGTTGC-TGCAGCAGGATCGAC
192 GCATACGGAGTTCATTCCCAGTCTAAG-CA----T--A-CGGA-GTT-CATTC-CCA-G-TCTA-
** * ** * * * * * ** * **
17296833 AGCA-CGCAGAGGGGGACCCGATCGTTCCTCGGCTTGCGCATCCCGCCCCTCTGGCGACTAAGCT
243 AG-ATCG--GACCGAGA-CCGAGGGTT--GCGGC-AGCACATGCTG-GGCTCGGGC-A-TGTGCT
** * * * **** * * * ***** *
17296897 CCTGCACGC-TCGTTTCTTGAGTTGACTTAGGCAT--ACGGAGTTCATTCACAATCTAAGCAT-A
298 GGTGC-CGCAT-TTTTCTT-CGTCGGGGCA-CCATCGCCGGAG--CA-TCGCCGGAGAA-CCTGA
* * *** * ** ** * * * *
17296958 -CGAAGTTCATTCCCAGTAT---AAGATCGGACCGGATC-GAGGGTTGCGACAGCACATGCTG-G
355 CCGGAG-GCATT-GGGGT-TCCGACGATCGG-GGGGGCCGGGGGGGTGTG-C-GCACATGATGTG
* * * * * * ** ** * * * *
17297017 -GCT-CGAGCAT-GTGC-TGGTGCCATAT-TTTTCATCGTCAGGGCACCATCATCGGAGTATCAT
414 CGATGGGTGC-TGGTACTTGG-CCCTTATATTGGCCCCCT-A--TC-CC-TCATC--A--AACCT
** *** ** * * * *** **
17297077 CGGAGAAC-CTGA----C-TGGCG-GCA-TTG-G-GGTT-CCGCG-AT-C-G---G-GGGGGTCG
468 C-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCAGTAGCCATTA
* ** * * * * * * * * **
17297124 GAG-GGGTG---TGCGCACA-TGATGTGC-GATGGGT-------GCTGGT--ACTT-G-GCCCTT
531 AAGTGTCTGAAATGGGGACACT-TTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAG-TTTT
** * * * * * * *
17297172 TATTTAAATTTTTTTGTGCATTCCTAGAAAAATACATGGATTACGTCTACCAACTTTGGGGCCAA
593 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * *
17297237 AACTCGTTCCGAAATAATTTTAAAAAATCTCGAATCGCAAAAAGTTT-TGAAAATCATGAAAAAT
658 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCT-AAAATCATGAAAAAT
** *
17297301 AGAAAACGAGTCGTCTTGCCATGAAACTTCATATAAAGGCTTAAGGGACCATTGTATGAATTTAC
722 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
17297366 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
787 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * * * *
17297431 TCGATCCATGACTTGCACGTCCTGTCTCTCTGGTCGGCATACTGGC
852 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* ** * **
17297477 TGCGTGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * *
17297542 CTGGACCGAGGGTTGCAGCAGCAGGATC-AGCAGCACGTAGAGGGGGACCC-GCTCGATCCCCGG
66 CCAGACCGAGGGTTGCGGTAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGC-CGATCCCCGG
* * *
17297605 CTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * * *
17297670 ATACAGAGTTCATTCGCAGTCTAAGCATACGAAGTTCATTCCCATTCCAAGATCGGACCG-GATC
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACC
** * *
17297734 GAGGGTTGCAACAGCACATGCTGGGCTGGGGCATGTCCTGGTGCCGCATTTTTCTTCG-CTGGGG
259 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGG
** * * * * * * *
17297798 CACCATCGTAGGAGCATCACCGGTGAACCTGAACGGTGGCATTAGGGTTCCGGCAATC-GGGGGG
323 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGAGGCATTGGGGTTCCGACGATCGGGGGGG
* * * *
17297862 CCTGGGGCGGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCTT
388 CC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
17297927 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
452 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
17297992 ACCAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTTCAAATGGTCACTAAAT-TTGTACA
517 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * * *
17298056 CTTTGAGTTTTTAGCTGAATGTTTTCGTGCCTACCAAAAAAAATACAAGGATCACGTCTACAAAG
582 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
17298121 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
647 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCTAAAAT
*
17298186 CATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
712 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
17298251 ATGAATTTACAAGCCATCAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACC
777 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
*
17298316 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCC
842 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * *
17298372 CGCCCGCCCGCTCATTTTGTTGGTT-GCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATC-GA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-
* * * * *
17298435 ACCGGACCGAGGGTTGTGGTAGCAGGATTCG-CAACACGTAGAGGGGGACCCGACCGATCCCCGG
65 ACCAGACCGAGGGTTGCGGTAGCAGGA-TCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGG
* ** * *
17298499 CTTGCGCATCCCGCCCCTCTAGCCGATTGAGCGCCCGCACACTCGATTCGTGGGTTGACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
*
17298564 ATACGTAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACC
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACC
* * * * *
17298628 GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCGAGG-
259 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
** *
17298692 --CA----C----CATCGCCGGAGAACCTGACCGGTCGCATTGGGGTTCCGGCGATCGGGGGGGC
324 ACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGAGGCATTGGGGTTCCGACGATCGGGGGGGC
* * **
17298747 CGGAGGGGTGTGCACACATGATGTTTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
389 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
**
17298812 CCCTCATCGTACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
454 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
17298877 CAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTGAAATTGTCACAAAATCTTGTACACT
519 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
17298942 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGAATCACGTTTACCAAGTT
584 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* ** * * * *
17299007 TGGGGCCAAAACCCCTTTTGAAAAAATTTTAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCA
649 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCTAAAATCA
*
17299072 TGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
714 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
17299137 GAATTTACAAGCCATAAAAATGGCATTGTCACGTAGAAATATGAAGATGTTCCTAAACCCACCTA
779 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
17299202 CCACCCTATCGATTCACGGCTTGCACATCCCGTCTCTCTGGTCGGCGTAGT---
844 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* *
17299253 -GCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
17299317 CCAGACCGAGGGTTGCGGTAGCA
66 CCAGACCGAGGGTTGCGGTAGCA
17299340 CATGTTGGGC
Statistics
Matches: 5394, Mismatches: 789, Indels: 354
0.83 0.12 0.05
Matches are distributed among these distances:
865 6 0.00
866 6 0.00
868 1 0.00
870 7 0.00
871 20 0.00
872 18 0.00
873 23 0.00
874 15 0.00
875 24 0.00
876 10 0.00
877 2 0.00
878 5 0.00
879 7 0.00
880 22 0.00
881 58 0.01
882 11 0.00
883 211 0.04
884 308 0.06
885 1 0.00
886 16 0.00
887 6 0.00
889 3 0.00
890 5 0.00
891 118 0.02
892 97 0.02
893 528 0.10
894 335 0.06
895 870 0.16
896 368 0.07
897 191 0.04
898 495 0.09
899 330 0.06
900 4 0.00
901 120 0.02
902 351 0.07
903 496 0.09
904 100 0.02
905 6 0.00
906 3 0.00
907 4 0.00
908 2 0.00
909 1 0.00
910 2 0.00
911 5 0.00
912 13 0.00
913 2 0.00
914 2 0.00
915 9 0.00
916 3 0.00
917 5 0.00
918 7 0.00
919 6 0.00
920 2 0.00
921 8 0.00
922 17 0.00
923 15 0.00
924 27 0.01
925 25 0.00
926 10 0.00
927 14 0.00
928 5 0.00
930 1 0.00
932 7 0.00
933 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT
TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGA
GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
CATCGCCGGAGCATCGCCGGAGAACCTGACCGGAGGCATTGGGGTTCCGACGATCGGGGGGGCCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCTAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
Found at i:17294115 original size:26 final size:26
Alignment explanation
Indices: 17294079--17294130 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17294069 TTGACATAGC
*
17294079 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17294105 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17294131 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17295009 original size:26 final size:26
Alignment explanation
Indices: 17294973--17295025 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17294963 GTTGACTTAG
*
17294973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
17294999 GCATACGGAGTTCATTGACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
17295025 G
1 G
17295026 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:17296845 original size:159 final size:157
Alignment explanation
Indices: 17296600--17296943 Score: 433
Period size: 158 Copynumber: 2.2 Consensus size: 157
17296590 TCATTTCGTC
* * * * * *
17296600 GGTTGGCTTAGGCATACAGAGTTCATTCCCATCTAAGATCAGACCGGATCGAGGGTTGCTGCAGT
1 GGTTGACTTAGGCATACGGAGTTCATTCCCATCCAAGATCAGACCGGACCGAAGGTTGCTGCAGC
* * * * *
17296665 AGGATCGGCAGCATGTAGAGGGGGACCCG-GCTGATCCCCGGCTTGCGGATCCAGCCCCTCTGGC
66 AGGATCGACAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCAGCCCCTCTGG-
*
17296729 CGACTGAGCGCCCGCACGCTCGTTT-TATG
129 CGACTAAGCGCCCGCACGCTCGTTTCT-TG
***
17296758 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGAT-AGTGTTGGACCGAAGGTTGCTGCA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCA-TCCAAGATCAG-ACCGGACCGAAGGTTGCTGCA
* * *
17296822 GCAGGATCGACAGCACGCAGAGGGGGACCCGATCGTTCCTCGGCTTGCGCATCCCGCCCCTCTGG
64 GCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCAGCCCCTCTGG
* *
17296887 CGACTAAGCTCCTGCACGCTCGTTTCTTG
129 CGACTAAGCGCCCGCACGCTCGTTTCTTG
*
17296916 AGTTGACTTAGGCATACGGAGTTCATTC
1 GGTTGACTTAGGCATACGGAGTTCATTC
17296944 ACAATCTAAG
Statistics
Matches: 161, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
158 82 0.51
159 78 0.48
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCATCCAAGATCAGACCGGACCGAAGGTTGCTGCAGC
AGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCG
ACTAAGCGCCCGCACGCTCGTTTCTTG
Found at i:17296979 original size:26 final size:26
Alignment explanation
Indices: 17296927--17296979 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17296917 GTTGACTTAG
* *
17296927 GCATACGGAGTTCATTCACAATCTAA
1 GCATACGAAGTTCATTCACAATATAA
* *
17296953 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCACAATATAA
17296979 G
1 G
17296980 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAATATAA
Found at i:17298599 original size:26 final size:26
Alignment explanation
Indices: 17298562--17298614 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17298552 GTTGACTTAG
*
17298562 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17298588 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17298614 G
1 G
17298615 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17299941 original size:708 final size:697
Alignment explanation
Indices: 17298588--17300030 Score: 2065
Period size: 708 Copynumber: 2.1 Consensus size: 697
17298578 CCCAGTCTAA
17298588 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
17298653 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCGAGGCACCATCGCCGGAGAACCTGACCGGT
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGCCGGACAACCTGACCGGA
* * * * ** *
17298718 CGCATTGGGGTTCCGGCGATCGGGGGGGCCGGAGGGGTGTGCACACATGATGTTTGATGGGTGCT
131 CGCATTAGGGTTCCGACGATCGAGGCGGCCGGAGGGGTGTGCACACATGATGTGCGATGCGTGCT
**
17298783 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGTACCTCGAGAACTCACACCCCCTTAAA
196 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
17298848 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTT
261 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
17298913 TTTGAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAT
326 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* **
17298978 AAAAATACAAGAATCACGTTTACCAAGTTTGGGGCCAAAACCCCTTTTGAAAAAATTTTAAAAAA
391 AAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAA
*
17299043 TCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGATTCGTCTTGCCATGAAACT
456 TCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
17299108 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCACGTAG
521 TCACATGAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
17299173 AAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCACATCCCGTCTC
586 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCCTACACATCCCGTCTC
* * *
17299238 TCTGGTCGGCGTAGTGCCAG-CCCGCTCGTTTCGTCGGTTGGCTTAG
651 TCTGGACGGCGTAATGCCAGCCCCACTCGTTTCGTCGGTTGGCTTAG
* * *
17299284 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
17299349 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCG-GGACACCATCACCGGAGCATTGCCGGAC
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGG-CACCAT--------C---GCCGGAC
* *
17299413 AACCTGACC-GACAGCATTAGGGTTCCGACGATCGAGGCGGCCAGG-GGTGGTGTGCGCTCATGA
119 AACCTGACCGGAC-GCATTAGGGTTCCGACGATCGAGGCGGCC-GGAGG-GGTGTGCACACATGA
* *
17299476 TGTGCGATGCGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAAC
181 TGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
17299541 TCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
246 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
17299606 AAATGGGGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
311 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * **
17299671 TTT-TTCAATGCCTACAAAAATACATGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCG
376 TTTGTGC-ATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCG
** *
17299735 AAAAAATTTTAAAAAATC-CGAAAAT-GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
440 AAAAAATTTTAAAAAATCTCG--AATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
17299798 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCCATAAA
503 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCCATAAA
* *
17299863 AATGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGA-TCGAC
568 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTC-AC
* * * * *
17299927 GGCCTACGCATCCCGTCTTTCTGGACGGCGTAATGCCCGCCCACCCACTCGTTTTGTTGGTTGGC
632 GGCCTACACATCCCGTCTCTCTGGACGGCGTAATGCCAG--C-CCCACTCGTTTCGTCGGTTGGC
17299992 TTAG
694 TTAG
* * * *
17299996 GTATACGAAGTTCATTCCCAGTCAAAGATCAGACC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
17300031 GGATTGAGGG
Statistics
Matches: 661, Mismatches: 63, Indels: 30
0.88 0.08 0.04
Matches are distributed among these distances:
695 2 0.00
696 102 0.15
704 1 0.00
706 2 0.00
707 48 0.07
708 449 0.68
709 3 0.00
712 54 0.08
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (697 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGCCGGACAACCTGACCGGA
CGCATTAGGGTTCCGACGATCGAGGCGGCCGGAGGGGTGTGCACACATGATGTGCGATGCGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAA
TCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACATGAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCCTACACATCCCGTCTC
TCTGGACGGCGTAATGCCAGCCCCACTCGTTTCGTCGGTTGGCTTAG
Found at i:17300191 original size:26 final size:26
Alignment explanation
Indices: 17300155--17300207 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17300145 GTTGACTTAG
17300155 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17300181 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17300207 G
1 G
17300208 AACGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17301093 original size:25 final size:26
Alignment explanation
Indices: 17301059--17301110 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
17301049 GTTGACTTAG
17301059 GCATACGGAGTTCATT-CCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17301084 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17301110 G
1 G
17301111 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17302664 original size:875 final size:861
Alignment explanation
Indices: 17301084--17303496 Score: 3131
Period size: 875 Copynumber: 2.8 Consensus size: 861
17301074 TCCAATCTAA
* ** *
17301084 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGACAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTCCGACAGCACATGCTGGG
* * *
17301149 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCATCGGGGCACCATCGTCGGAGTATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATC-CTGGAGA
* * * *
17301214 ACCTGACCGGTGACATTAGGGTTCCGACGAT-GCGGGGCCGGGGGGTGTGCACACATGATGTGCG
130 ACCTGACCGGCGACATTAGGGTTCCGATGATCGCGGGGCCGGGGGTTGTG-GCACATGATGTGCG
*
17301278 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACA-
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
17301342 CCCCTTAAAGAGTA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
17301406 GGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * ** *
17301471 CGTGCCAATAAAAATACAACGATCACCCCTACTC-AGTTTGGGGCCACAAATCATTCCGAAAAAA
389 CATGCCAACAAAAATACAAGGATCACGTCTAC-CAAGTTTGGGGCCA-AAATCCTTCCGAAAAAA
* * * * * *
17301535 TTTTCAAAAAT-TCCAAACCGTAGAAAGTTTTG-AAAATCGTGAAAAAT-AGAAAATGAGTCGTA
452 TTTTAAAAAATCT-GAAACCGAAAAAAGTTTTGAAAAATTGTGAAAAATAAGAAAACGAGTCGT-
* * *
17301597 CTTG-CATGAACTTTACGTGAAGGCTTAAAGGGACAAACTGTATGAATTTTACAAGCCAT--AAA
515 CTTGCCATGAACTTCACGTGAAGGCTT-AAGGGAC-CATTGTATGAA-TTTACAAGCCATAAAAA
* * * * * *
17301659 TGGCATTGGTATGCAAAAATATGAAGATGTGCAT-AACCC-C-TACCAACCTATCGATCCACTGG
577 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCAC-GG
** * *
17301721 CTTGCGCATCCTATCTCTCTA-CCGACATAGTG-C-CCG--CCCGGCCGCTCGTTTCATCGGTTG
641 CTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCGCCGCCCCCGCCCGCTCGTTTCATCGGTTG
* *
17301781 GCTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGATCGGACTGAGGG-T-TA-C-GGCAGC
706 GCTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGACTGAGGGTTATAGCAGGCAGC
* * * * * *
17301842 ACGTAGAGGGGGACCCGGCCGATCCCTGACTTGCGCATCTCACCCCTTTGGCCGGCTGAGCGCTC
771 ACATAGAGGGGGACCCGACCGAT-CCTGACTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCC
17301907 GCACGCTCGTTTCGTAGGTTGACTTAG
835 GCACGCTCGTTTCGTAGGTTGACTTAG
* *
17301934 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTCCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTCCGACAGCACATGCTGGG
* * * *
17301999 CTTGAGCATGTCCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATC-CTGGAGA
*
17302064 ACCTGACCGGCGACATTAGGGTTCCGATGATCGGGGGGGCCTAGGGGGTTGTGTGCACATGATGT
130 ACCTGACCGGCGACATTAGGGTTCCGATGATC-GCGGGGCC--GGGGGTTGTG-GCACATGATGT
17302129 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17302193 CACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAA
256 CA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
17302258 ATGGAGACAC-TTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTGTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
17302322 TATGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAA
*
17302387 AAATTTTAAAAAATCATGAAACCTGGCAAAAAAAGTTTTGAAAAATTGTTAAAAAATTAAGGAAA
449 AAATTTTAAAAAATC-TGAAACC--G--AAAAAAGTTTTGAAAAATTG-TGAAAAA-TAA-GAAA
* * *
17302452 ACGAGTCGTCTTGCCATGAACTTCACGTAAAGGCTTAAGGGACCATTGTCTGAGTTTACAAGCCA
506 ACGAGTCGTCTTGCCATGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
17302517 TAAAAATAGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATC
571 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATC
* *
17302582 CACGGCTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCTCGACCGCCCACCCGCCCGTTCGTTT
636 CACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGC-CG-CCG-CC-CCCGCCCGCTCGTTT
* * *
17302647 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGATTGAGGGTTTCA
697 CATCGGTTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGACTGAGGG-TT--
* * *
17302712 ATAGCAGGATTGGCAGCACATAGAGGGGGACCCGATCGATCCTGGCTTGCACATCCCTCCCCTCT
759 ATAGC---A--GGCAGCACATAGAGGGGGACCCGACCGATCCTGACTTGCACATCCCACCCCTCT
* * * *
17302777 GGTCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
819 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAG
* * ** * * *
17302820 GCTTACGGAAATTCCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTCCGACAGAAAATGTTG
1 GCATACGG-AGTT-CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTCCGACAGCACATGCTG
* * *
17302885 GGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCCT-GGA
* * * * * *
17302950 GAACCTGACCGACGACATTGGGGTTCCGGTGATCGCGGGGTCGGGGGGTATGCGG-ACATGCTGT
128 GAACCTGACCGGCGACATTAGGGTTCCGATGATCGCGGGG-CCGGGGGT-TGTGGCACATGATGT
* * * *
17303014 GCGATTGGTGCTGGTACTCGACCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17303079 GA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17303143 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17303208 GTGCAAGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAA
* * * **
17303273 AATTTAAAAAAATCCCG-AACCGAAAAAAG-TTTCAAAAATCATGAAAAATAA-AAAAC-AGGTC
450 AATTTTAAAAAAT-CTGAAACCGAAAAAAGTTTTGAAAAATTGTGAAAAATAAGAAAACGA-GTC
* * *
17303334 ATCTTGCCGTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 GTCTTGCCATGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
17303399 GGCATTGGCTCATAGAAATTTGAAGATGTGCCTAAACCCACTAACCACCCTATCGATCCACGGCT
578 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCT
** * *
17303464 TGCATATCCCGTCTCTCTGGCCGGCGTAGTGCC
643 TGCGCATCCCGTCTCTCTAGCCGACGTAGTGCC
17303497 CGCCCGCCTG
Statistics
Matches: 1366, Mismatches: 140, Indels: 90
0.86 0.09 0.06
Matches are distributed among these distances:
850 145 0.11
852 7 0.01
853 32 0.02
854 56 0.04
855 127 0.09
856 59 0.04
857 1 0.00
858 1 0.00
860 10 0.01
861 6 0.00
862 18 0.01
863 8 0.01
864 43 0.03
865 37 0.03
866 21 0.02
867 28 0.02
869 1 0.00
871 3 0.00
874 2 0.00
875 222 0.16
877 4 0.00
878 6 0.00
879 9 0.01
880 9 0.01
881 1 0.00
882 1 0.00
884 73 0.05
885 158 0.12
886 108 0.08
887 38 0.03
888 132 0.10
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (861 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTCCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCCTGGAGAA
CCTGACCGGCGACATTAGGGTTCCGATGATCGCGGGGCCGGGGGTTGTGGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTT
AAAAAATCTGAAACCGAAAAAAGTTTTGAAAAATTGTGAAAAATAAGAAAACGAGTCGTCTTGCC
ATGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTAGCCGACGTAGTGCCGCCGCCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
ACGGAGTTCATTACCAGTCTAAGATCAGACCAGACTGAGGGTTATAGCAGGCAGCACATAGAGGG
GGACCCGACCGATCCTGACTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTAGGTTGACTTAG
Found at i:17304174 original size:578 final size:577
Alignment explanation
Indices: 17302955--17304664 Score: 2768
Period size: 578 Copynumber: 3.0 Consensus size: 577
17302945 TCGGAGAACC
* ** * * * * *
17302955 TGACCGACGACATTGGGGTTCCGGTGATCGCGGGG--TCGGGGGGTATGCGGACATGCTGTGCGA
1 TGACCGACGACATTAGGGTTCCAATGATCG-GGGGAACCGGGGGGTGTGCGCACATGATGTGCCA
* * * * *
17303018 TTGGTGCTGGTACTCGACCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCAGA-C
65 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
17303082 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
130 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
17303147 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGC
195 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
17303212 AAGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
260 ATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCCAAAAAAATT
* * *
17303277 TAAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAAAAAAC-AGGTCATCTTGC
325 TAAAAAAATCCTGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA-GTCATCTTGC
17303341 C--GTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
389 CAAG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
17303404 TGGCTCATAGAAATTTGAAGATGTGCCTAAACCCACTAACCACCCTATCGATCCACGGCTTGCAT
453 TGGCTCATAGAAATTTGAAGATGTGCCTAAACCCACTAACCACCCTATCGATCCACGGCTTGCAT
*
17303469 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCATTTCATCACCGAAAATTT
518 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCATTTCATCACCAAAAATTT
17303529 TGACCGACGACATTAGGGTTCCAATGATCGGGGGAACCGGGGGGTGTGCGCACATGATGTGCCAT
1 TGACCGACGACATTAGGGTTCCAATGATCGGGGGAACCGGGGGGTGTGCGCACATGATGTGCCAT
* *
17303594 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCACTCCC
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
17303659 CCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGA
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
17303724 ACACTTTTTTCAAATGGTCACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGC
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGC
* * * *
17303789 ATGCCAAAAAAAATACAAGGATAATGTCTACCAAGTTTGGGGTCAAAAATCCTTCCAAAAAAATT
260 ATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCCAAAAAAATT
* * * * *
17303854 TTAAAAAATCCTGAGCCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
325 TAAAAAAATCCTGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
17303919 AAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
390 AAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
17303984 ACTTATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCATAT
455 GCTCATAGAAATTTGAAGATGTGCCTAAACCCACTAACCACCCTATCGATCCACGGCTTGCATAT
17304049 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCATTTCATCACCAAAAATTT
520 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCATTTCATCACCAAAAATTT
17304107 TGACCGACGACATTAGGGTTCCAATGATCGGGGGAACCGGGGGGTGTGCGCACATGATGTGCCAT
1 TGACCGACGACATTAGGGTTCCAATGATCGGGGGAACCGGGGGGTGTGCGCACATGATGTGCCAT
*
17304172 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCT
66 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
17304237 CATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGG
131 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * *
17304302 ACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTGAGCTGAATTTCTCTGTGCA
196 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * * *
17304367 TGCTATCAAAAATACAAGGATCACGTCCACCATGTTTTGGGCCAAAACTCCTTTCAAAAAAATTT
261 TGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCCAAAAAAATTT
** *
17304432 AAAAAAAT-CTCGAACCCCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
326 AAAAAAATCCT-GAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
* *
17304496 AAGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTG
390 AAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
17304561 GCTCGTAGAAATTTGAAGATGTGCCTAAACCCACTAACCACCCTATCGATCCACGGCTTGCATAT
455 GCTCATAGAAATTTGAAGATGTGCCTAAACCCACTAACCACCCTATCGATCCACGGCTTGCATAT
* *
17304626 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCC
520 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCC
17304665 GTCCGCTCGT
Statistics
Matches: 1049, Mismatches: 79, Indels: 13
0.92 0.07 0.01
Matches are distributed among these distances:
573 4 0.00
574 27 0.03
575 79 0.08
576 118 0.11
577 403 0.38
578 417 0.40
579 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (577 bp):
TGACCGACGACATTAGGGTTCCAATGATCGGGGGAACCGGGGGGTGTGCGCACATGATGTGCCAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCCAAAAAAATTT
AAAAAAATCCTGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
AGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CTCATAGAAATTTGAAGATGTGCCTAAACCCACTAACCACCCTATCGATCCACGGCTTGCATATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCATTTCATCACCAAAAATTT
Found at i:17304887 original size:26 final size:26
Alignment explanation
Indices: 17304850--17304902 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17304840 TTTGACTTAG
* *
17304850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGACTAA
17304876 GCATACGAAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
17304902 G
1 G
17304903 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:17309228 original size:865 final size:860
Alignment explanation
Indices: 17308067--17311350 Score: 4030
Period size: 904 Copynumber: 3.8 Consensus size: 860
17308057 GGCACCATCA
* * * * * *
17308067 TCGAAGCATCATCGGAGAACCTGACCGGCGGCAGTAGGGTTCCGGCGATCGGGGGGCC-GGGGGG
1 TCGAAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
* ** *
17308131 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGCTGGCCCCCAATCCCTCATC
66 TGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
17308196 AAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
131 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
17308261 ATTAAAGTGACTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
196 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
17308326 TTAGCTGAATTTTTTTGTGCATGCCAACAACAATACAAGGATCACGTCTACCAGGTTTGGGGCCA
261 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
17308391 AAACTCATTGCGAAAAAACTTTAAAAAATCCTAAACTGCAAAACGTTTCGAAAATCGTGAAAAAT
326 AAACTC-TTCCGAAAAAATTTTAAAAAATCCTAAACTGCAAAAAGTTTCAAAAATCATGAAAAAT
* * * *
17308456 ATAAAACT-CGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
390 AGAAAA-TGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
17308520 CAAGCCATATAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
454 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
17308585 ATCGATCCACAACTTGCGCATCCCGTTTCTCTGGCTGATGTTGTTCTCGCCTGCCTGCCCGTCCG
519 ATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTGATGTAGTGCTCGCCCGCCTGCCCGTCCG
* * *
17308650 CTCATTTCCTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
584 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * *
17308715 GGTTGCGGTAGCAGGATCGATAGCATGCAGAGGGGGACCCGATCGGTCCCC-GACTTGCGCATCC
649 GGTTGCGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCTGA-CGATCCCCAG-CTTGCGCATCC
* *
17308779 CACCCCTCTGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTC
712 CACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCTC
* *
17308844 ATTGCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCTTGTGC
777 ATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGC
* **
17308909 TGGTGTCGTATTTTTCTTCG
841 TGGTGCCACATTTTTCTTCG
* * *
17308929 TCGAAGTATCACCGAAGAACCTGACCGACGGCATTGGGGTACTGACGATCGGGGGGGCCGGGCGG
1 TCGAAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGG-GG
* * * *
17308994 GGTGTGCGC-CGATGATGTACGATGGGTGCTGGTACTTTGCCCTGATATTGGCCCCCTATCCCTC
64 GGTGTGCGCAC-ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
17309058 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGCA
128 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
17309123 GCCTTTAAAGTGTTTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
193 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
17309188 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
258 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
17309253 CCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC-AAAATCATGAAA
323 CCAAAACTC-TTCCGAAAAAATTTTAAAAAATCCTAAACTGCAAAAAGTTTCAAAAATCATGAAA
* *
17309317 AATAGAAAATGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
387 AATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** **
17309382 TACAAGCCATAAAAAAAGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
452 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
17309447 CTATCGATCCACGGCTTGCGCAT-CCGTCTCTCT-GATAGACGTAGTGCCCGCCCGCC--CGC-T
517 CTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCT-GATGTAGTGCTCGCCCGCCTGCCCGT
* * * * * * *
17309507 -CGATTGTTTCATCGGTTGGTTTAGGCTTACGGAGTTCATTCCTAGTCTGAGATCAGACCGGATC
581 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * *
17309571 GAGGGTTGCGGTAGCAGGATCGGCAGCATGTAGAGGGGGACCTGCCCGATCCCCAGCTTGCGCAT
646 GAGGGTTGCGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCTG-ACGATCCCCAGCTTGCGCAT
* * * * * * * * *
17309636 CCAACCCTTCTGGCCGGCTGACCGCCCGAACGCTCGTTTCGTTGGTTGTCTTTGGCATACGGAGA
710 CCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGC
* * * *
17309701 TCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGTTGGGCTCGAGCAAGT
775 TCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGT
17309766 GCTGGTGCCACATTTTTCTTCG
839 GCTGGTGCCACATTTTTCTTCG
* * * * * * *
17309788 TCGGGGCACCATCACCGGAGAACCTGACGGGCGACATTGGGGTTCTGACGATCGGGGGGCCGAGG
1 TC---GAAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GG
*
17309853 GGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT-TTCAGCCCCCTATCCC
62 GGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCC
* * * *
17309917 TCATCAAACCTCTAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTCACAGCTTTGCTGCCAG
126 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
17309982 TAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCG
191 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
17310047 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATAAAAGGATCACGTCTACGAAGTTTG
256 AGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
17310112 GGGCCAAAACGTCTTCCGAAAAAAATTTAAAAAATCCTGAACTGCACAAAGTTTCAAAAATCATG
320 GGGCCAAAAC-TCTTCCGAAAAAATTTTAAAAAATCCTAAACTGCAAAAAGTTTCAAAAATCATG
*
17310177 AAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGA
384 AAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
17310242 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
449 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
17310307 ACACTATCGATCCACAGCTTGCGCATCCCGTCTCTTTGGCCGGTGTAATGCCCGCCCGTCTGCCC
514 ACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTGATGTAGTGCTCGCCCGCCTGCCC
* * ** * * * * **
17310372 -ACCAACTCGTTTTGTCAGCTGGCTTAAGCATACGGAGTTCATTCCCAGTGTAAGATC-GAATGG
579 GTCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * *
17310435 ATCGAGGGTTGCGGTAGCAGGATCGGTAGC-TCGCATAGGGGGACCTGACTGATCCCTAGCTTAC
643 ACCGAGGGTTGCGGTAGCAGGATCGGTAGCAT-GCAGAGGGGGACCTGAC-GATCCCCAGCTTGC
* * **
17310499 GCATCCCACCCCTCTGGCCAGCTGAGCGCTCGCATACTCATTTCGTGGGTTGACTTAGGCATACA
706 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-
* *
17310564 GAGTTAATTCCCAGTCTAAGCATACAGAGTTCTTTCCCAGTCTAAGATCGGACCAGATCGAGGGT
770 --G----------G----AGC-T-C--A-----TTCCCAGTCTAAGATCGGA-CGGACCGAGGGT
* * * *
17310629 TGCGGTACCACATGCTGGGCTTGGGCATGTGCTAGTGCCACATTTTTCTTCACCGG
809 TGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCACATTTTTCTT---C-G
* * * * * * * *
17310685 GCCACCATCGCCGGTGCATCGATGGAGAACCTAACTGACGGCATTGGAGTTCCGGCGATCGGGGG
1 TCGA--A--G-C-AT-CACCGA---AGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGG
* * *
17310750 GGCCGGGGGGGTGTACGCACATGATATGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCC
55 GGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
17310815 TATCTCTCATCAAACCTCAAGAACTCACACCCCCTTTAAGGGCATTTGAGATTTTACAGGTTTGC
120 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
17310880 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTGAAATGGTCACAAAATCTCGTA
185 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTA
* * *
17310945 CACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGATCATGTCTACCA
249 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
17311009 AGTTTGGGGCCAAAAGTCCTTCCGAGAAAATTTTAAAAAAT-TTCAAACAGCAAAAAGTTTCAAA
314 AGTTTGGGGCCAAAACT-CTTCCGAAAAAATTTTAAAAAATCCT-AAACTGCAAAAAGTTTCAAA
** * * *
17311073 AATTTTGAAAAATAAAAAAACGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
377 AATCATGAAAAAT-AGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
17311138 TTGTATGAATTTACAATCCATAAAAATGGCATTGGCACACAGAAATATGAACATGTACCTAAACC
441 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
*** * **
17311203 CACCTACCACCCTATCGATCCTTGGCTTACGCATCCCGTCTCTCTGGGC-GGCGTAGTG--C-CC
506 CACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCT-GGCTGATGTAGTGCTCGCC
**
17311264 ATCC-GCCCGT----TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
570 CGCCTGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
17311324 -AGGACCGGACCGAGGGTTACGGCAGCA
635 CA-GACCGGACCGAGGGTTGCGGTAGCA
17311351 CATGCTGGCC
Statistics
Matches: 2084, Mismatches: 261, Indels: 119
0.85 0.11 0.05
Matches are distributed among these distances:
858 1 0.00
859 242 0.12
860 4 0.00
861 213 0.10
862 164 0.08
863 191 0.09
864 178 0.09
865 286 0.14
866 4 0.00
867 111 0.05
868 40 0.02
870 1 0.00
880 1 0.00
884 2 0.00
885 1 0.00
886 1 0.00
888 1 0.00
893 70 0.03
894 1 0.00
896 46 0.02
897 22 0.01
899 1 0.00
900 5 0.00
901 7 0.00
902 3 0.00
903 85 0.04
904 329 0.16
905 74 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (860 bp):
TCGAAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
TGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAACTCTTCCGAAAAAATTTTAAAAAATCCTAAACTGCAAAAAGTTTCAAAAATCATGAAAAATA
GAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTGATGTAGTGCTCGCCCGCCTGCCCGTCCGCT
CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
TTGCGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCTGACGATCCCCAGCTTGCGCATCCCACC
CCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCATTC
CCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTG
CCACATTTTTCTTCG
Found at i:17310588 original size:26 final size:26
Alignment explanation
Indices: 17310557--17310609 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17310547 GTTGACTTAG
17310557 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
**
17310583 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
17310609 G
1 G
17310610 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:17312198 original size:26 final size:26
Alignment explanation
Indices: 17312167--17312219 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17312157 GTTGACTTAG
17312167 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
**
17312193 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
17312219 G
1 G
17312220 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:17313281 original size:716 final size:714
Alignment explanation
Indices: 17312193--17313679 Score: 2078
Period size: 717 Copynumber: 2.1 Consensus size: 714
17312183 CCCAGTCTAA
* * * * * * *
17312193 GCATACAGAGTTCTTTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTACCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGC
* *
17312258 CTTGGGCATGTGCTAGTGCCACATTTTTCTTCACCGGGCCACCATCGCCGGTGCATCGATGGAGA
66 CTTGGGCATGTGCTAGTGCCACATTTTTCTTCACCGAGCCACCATCGCCGGAGCATCGATGGAGA
* * *
17312323 ACCTAACTGACGGCATTGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTACGCACATGATATGCA
131 ACCTAACAGACGGCATTGGGTCCCGACGATCGGGGGGCCGGGGGGGTGTACGCACATGATATGCA
* * *
17312388 ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTAGTACTTGGCCCTTATACTGGCCCCCAATCCCTCATCAAACCTCAAGAACTCACAC
* * *
17312453 CCCCTTTAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
17312518 GGACACTTTTTTTGAAATGGTCATAAAATCTCGTACACTTTGAG-TTTTGGCTGAATTTTTTTGT
326 GGACACTTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** *
17312582 GCATGCCAAC-AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCGAGAAAA
391 ACAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-AAAA
** **
17312646 ATTTTAAAAAATTTCAAACAGCAAAAAGTTTCAAAAATTTTGAAAAATAAAAAAAACGAGTCATC
455 ATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAAT--AAAAAACGAGTCATC
17312711 CTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-TCCATAAAAATG
518 CTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGT-CATAAAAATG
* *
17312775 GCATTGGCACACAGAAAT-TGAACATGTACCTTAAACCCACCTACCACCCTAATCGATCCTTGGC
582 GCATTGGCACACAGAAATATGAACATGTACC-TAAACCCACCTACCACACT-ATCGATCCATGGC
* * * ** * *
17312839 TTACGCATCCCGTCTCTCTGGGCGGCGTAGTG-CC-CATTCCCGCCCATTCGTTTCATCGGTTGG
645 TTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCACGCCCGCCCACTCATTTCATCGGTTGG
17312902 CTTAG
710 CTTAG
* **
17312907 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTATGGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGC
* * * * *
17312972 CTTCGGGCATGTGCTGGTGTCGCATTTTTCTTTACCGAAG-CACCATCGTCGGAGCATC-ATCGG
66 CTT-GGGCATGTGCTAGTGCCACATTTTTCTTCACCG-AGCCACCATCGCCGGAGCATCGAT-GG
* * *
17313035 AGAACCTGACCAG-CGGCATTGGGGTCCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGAT
128 AGAACCT-AACAGACGGCATT-GGGTCCCGACGATCGGGGGGCCGGGGGGGTGTACGCACATGAT
* * * * **
17313099 GTGCGATGGGTGCTGGTATTTGGCCCTTATACTGGCCCCCCAATCCCTCATCAAACCTTGAGAAC
191 ATGCAATGGGTGCTAGTACTTGGCCCTTATACTGG-CCCCCAATCCCTCATCAAACCTCAAGAAC
17313164 TCACACCCCAC-TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT
255 TCACACCCC-CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
17313228 GGAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
319 GAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATT
*
17313292 TTTTTGTACAAGCCAACAAAAATACAAGGATCACATCTACGAAGTTTGGGGCCAAAACTCCTTCC
384 TTTTTGTACAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
17313357 GAAAAAATTTTAAACAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
449 GAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGT
* *
17313422 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAA
514 CATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAA
* * * * *
17313487 ATGGCATTGGCTCATAGAAATATGAAGATGTGCCTAAACCCACTTACCACACTATCGATCCATGG
579 ATGGCATTGGCACACAGAAATATGAACATGTACCTAAACCCACCTACCACACTATCGATCCATGG
* * * **
17313552 CTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCCGCCCGCCCGCCCGCTCATTTTGTCGGTT
644 CTTACGCATCCCGTCTCTCTAGCCGACGTAGTG-CCCGCACGCCCGCCCACTCATTTCATCGGTT
17313617 GGCTTAG
708 GGCTTAG
*
17313624 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
17313680 GGATCGACAG
Statistics
Matches: 679, Mismatches: 80, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
714 100 0.15
715 168 0.25
716 119 0.18
717 246 0.36
718 46 0.07
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGC
CTTGGGCATGTGCTAGTGCCACATTTTTCTTCACCGAGCCACCATCGCCGGAGCATCGATGGAGA
ACCTAACAGACGGCATTGGGTCCCGACGATCGGGGGGCCGGGGGGGTGTACGCACATGATATGCA
ATGGGTGCTAGTACTTGGCCCTTATACTGGCCCCCAATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
ACAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCCTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCAT
TGGCACACAGAAATATGAACATGTACCTAAACCCACCTACCACACTATCGATCCATGGCTTACGC
ATCCCGTCTCTCTAGCCGACGTAGTGCCCGCACGCCCGCCCACTCATTTCATCGGTTGGCTTAG
Found at i:17315043 original size:869 final size:866
Alignment explanation
Indices: 17312896--17317960 Score: 5831
Period size: 866 Copynumber: 5.8 Consensus size: 866
17312886 TCGTTTCATC
* * * ** **
17312896 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTATGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCGGATAGGACCGAGGGTTGCGGCAG
* * * *** **
17312961 CACATGCTGGCCTTCGGGCATGTGCTGGTGTCGCATTTTTCTTTACCGAAGCACCATCGTCGGAG
66 CACATGCTGGGC-TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G
* * *
17313026 CATCATCGGAGAACCTGACCAGCGGCATTGGGGTCCCGACGATCGGGGGGTC-GGGGGGGTGTGC
124 ---C--CGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGCTGTGC
* * * * *
17313090 GCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATACTGGCCCCCCAATCCCTCATCAAAC
184 GCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGG-CCCCCTATCCCTCATCAAAC
* *
17313155 CTTGAGAACTCACACCCCAC-TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATT
248 CTCGAGAACTCACACCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
17313219 AAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
312 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
17313284 GCTGAATTTTTTTGTACAAGCCAACAAAAATACAAGGATCACATCTACGAAGTTTGGGGCCAAAA
377 GCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA
* * *
17313349 CTCCTTCCGAAAAAATTTTAAACAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
442 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
17313414 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
507 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
17313479 TCATAAAAATGGCATTGGC-T-CATAGAAATATGAAGATGTGCCTAAACCCACTTACCACACTAT
572 CCATAAAAATGGCATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
17313542 CGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCCGCCCGCCCGCCCGCTCA-
635 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCCGCCCGCCCGCCTGC-CAC
*
17313606 T--TTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGG
698 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGG
* * * * **
17313668 GTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCTGCCCGATCCCTGGCTTGCGCATCCAA
763 GTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCG
* *
17313733 CCCCTCTGGCCAGTTGAGCGCCCGAACGCTCATTTCATG
828 CCCCTCTGGCCGGTTGAGCGCCCGAACGCTCATTTCGTG
* * * * * ** *
17313772 GGTTGTCTTCGGCATACGGAGTTCATTCCCAGTCTAACATCCGACCGGACCGAGGGTTGTGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCGGATAGGACCGAGGGTTGCGGCAG
17313837 CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGA
66 CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGA
* * ** *
17313902 ACTTGACCGGCAACATTGGGGTTCCGAC-ATTCGGGGGAGCCAGTGGGGGCTGTGCACACATAAT
131 ACCTGACCAGCGGCATTGGGGTTCCGACGA-TCGGGGG-GCCAG-GGGGGCTGTGCGCACATAAT
* *
17313966 GTGTGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
17314031 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGCCTAA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
17314096 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
17314161 TGGTACATGCCAACAAACATACAAGGATCTCATCTACCATGTTTGGGGCCAAAACTCCTTCCAAA
388 TTGTACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
17314226 AAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
17314291 CTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATT
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
17314356 GCACTGACATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
17314421 GCGCATCCTGTCTCTCTGGCCTGTGTAGTGCCCGCCCGCCCGCCTGCCAACTCGTTTCGTCGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCC-ACTCGTTTCGTCGGTT
* * *
17314486 GGCTTAGGCATACGGAGTTCATTCCCAGTCTATGAAT-AGACCAGACCGAGGGTTGCGGCAGCAG
712 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAG
*
17314550 GATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGG
776 GATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
17314615 CTGAGCGCCAGCACGCTCGTTTCGTG
841 TTGAGCGCCCGAACGCTCATTTCGTG
* * *
17314641 GGTTGACTTAGGCATACAGAGTTCATTTCCAGTCAAAGATCGGATAGGACCGAGTGTTGCGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCGGATAGGACCGAGGGTTGCGGCAG
* * * * **
17314706 CACATGTTGGGCTTGAGCATCTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGA
66 CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGA
* * ** * *
17314771 ACTTGACTAGCGATATTGGGGTTTCGATGATCGGGAGGGCCAGGGGGGCTGTGCAG-ACATAATG
131 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGG-GGGCCAGGGGGGCTGTGC-GCACATAATG
* * *
17314835 TGCGATGGGTCCTAGTACATGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
17314900 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
17314965 ATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
** * * *
17315030 TTGTGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAA
388 TTGTACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
17315095 AGAATTTTAAAAAATCCTGAACC-------G--T-AAAAATCATGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
17315150 CTTGCCATGAAACTTCACATGGAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
17315215 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
17315280 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGACTGCCT---ACTCGTTTCATCGGTTG
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCACTCGTTTCGTCGGTTG
* * * * ** * *
17315338 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAATTGAGGGTTACGGCAACAGGA
713 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * * ** *
17315403 TC-AGCAACATGCAGAGGGGGACCCAGCCGATCCCTGGCTTACGCATCCCGCCCCTCTGGTAGGC
778 TCGA-CAGCATGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGT
* * *
17315467 TGAGCGCCCGAACACTTATTTTGTG
842 TGAGCGCCCGAACGCTCATTTCGTG
*
17315492 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCTCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-----A-A---AG---A---TC-G-----GA
* * *
17315557 TCAGATCGGACCAAAGGTTGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTAT
45 T---A--GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA-TT-T
* * *
17315622 CTTCGTCAGGGCACCATCGTCGGAGCATCGCCAGAGAATTGCCGGAGAACCTGACGAGCGGCATT
103 -TTC-T----------TCGTCGGGGCA---CC-----ATCGCCGGAGAACCTGACCAGCGGCATT
* ** * * *
17315687 GGGGTTTCGACGATCGGAGGGG-TTGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTAC
148 GGGGTTCCGACGATCGG-GGGGCCAGGGGGGCTGTGCGCACATAATGTGCGATGGGTGCTGGTAC
* *
17315751 TTGGCCCTTATATTGG-CCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
212 TTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
17315815 TTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTCTCTGAAAATGGGGACACTTTTTTC
277 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTC
* * * *
17315880 AAATGGTCACAAAATCTTGTAAACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
341 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAA
* * * * **
17315945 ATACAAGGATCACGTATACCAAGTTTGGGGCCAAAAATCCTCCCGAAAAAATTTTAAAAAATCTT
406 ATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
** * *
17316010 GAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGCCTTGCCATGAAACTTCAC
471 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
17316075 GTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAAT
536 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
17316140 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTT
601 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * * * *
17316205 GTCGGTGTAGTACACGCCCACTCGCCCGCCCGCTCCTTTCGTCGGTTGGCTTAGGCATACGGAGT
666 GCCGGCGTAGTGCCCGCCCGCCCGCCTG-CCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * ** * * *
17316270 TCATTCCTAGTCTAAGATCAGATCGGGCTGAGGGTTGTGGCAGCAGGATTGGTAGCACGTAGAGT
730 TCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGG
* * ** * * * * * * *
17316335 GAGATCCGGTAGATCCCTGGA-TTACGCATCCCGCCCGTTTGGCCAGTTGAGCGCCCGCATGCTC
795 GGGACCCGGCCGATCCC-CGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGAACGCTC
*
17316399 GTTTCGTG
859 ATTTCGTG
*
17316407 GGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCATACGGAATTCATTCCTAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTC--A--A-A--G-----A-T-C--G-----GA
* * * * *
17316472 TCAGACTGAACCAAGGGTTGCGGTAGGACATGCTGGGCTCGGGCATGT-CTTGGTGCCGTATTTT
45 T-AG---G-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGC-TGGTGCCGCATTTT
* *
17316536 TCTTCGTCGGGGCACCATCATCGAAGCATTACCGGAGAACCTGATC-GAAGGCATTGGGGTTCCG
104 TCTTCGTCGGGGCA-C--CATC---G-----CCGGAGAACCTGACCAG-CGGCATTGGGGTTCCG
* * * * *
17316600 ACGATTGGAAGGGCCA--GGGG-TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTT
157 ACGATCGG-GGGGCCAGGGGGGCTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTC
* *
17316662 ATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATT
221 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * * *
17316727 TTACAGGTTTGCTGTCAGTAGCCATTAAAGTTTCTGAAATGGAGACACTTTTTTCAAATGGTTAA
286 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * * * *
17316792 AAAATCTAGTACGCTTCAAGTTTTTAGCTGAATATTTTTT-TGCCTG-CAA-ACAAA-A-AA--A
351 AAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTACATGCCAACAAAAATACAAGGA
* * *
17316850 T-A-AT-T----A---T-----C---ACGCCTTCCGAAAAAATTTTAAAAAATCCCAAATCGTAA
415 TCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
*
17316897 AAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
480 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
17316962 TAAGGGACTATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACGTAGAAATATGAAGATG
545 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * *
17317027 TGCCTAAACCCACTTACCACACTA-CGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGCCGTA
610 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * * **
17317091 GTGCCCGCCCGTCCACCTG---CTCATTTCGTCAGTTGGCTTAGGCATATAGAGTTCATTCCTAG
675 GTGCCCGCCCGCCCGCCTGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
* * * * * * *
17317153 TCTAAGATCAGACTGGATCGAGGGTTGCGGTAGTAGGATCGGCAGCATGCAGAGGGGGACCTGCC
740 TCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGGC
* * ** *
17317218 CGTTCCCC-AGCTTGCGTATCCAACCCCTCTGGCCGGTTAAGCGCCCGAACGCTCATTTCGTG
805 CGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGAACGCTCATTTCGTG
* * * * *
17317280 GGTTGTCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCGGATAGGACCGAGGGTTGCGGCAG
* * * *
17317345 CACATGCTAGGCTCAAGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGA
66 CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGA
* *
17317410 ACTTGACC-GTCGGCATTGGGGTTCCGACGATCGGGGGAGCCGGGGGGGGCTGTGCGCACATAAT
131 ACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGGG-GCC-AGGGGGGCTGTGCGCACATAAT
* *
17317474 GTGTGATGGGTGCTCGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
17317539 CACACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGCCTAA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
17317604 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTT
*
17317669 TAT-TACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
387 TTTGTACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* ** *
17317733 AAGAATTTTAAAAAATCTTGAACCGTAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
452 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
17317798 TCTTGCCATGAAACCTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
17317863 GGCACTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
17317928 TACGCATCCTGTCTCTCTGACCGGTGTAGTGCC
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
17317961 AACTCGTTTC
Statistics
Matches: 3589, Mismatches: 451, Indels: 309
0.83 0.10 0.07
Matches are distributed among these distances:
835 2 0.00
836 39 0.01
839 4 0.00
840 195 0.05
841 4 0.00
842 4 0.00
843 1 0.00
844 6 0.00
846 3 0.00
847 58 0.02
848 4 0.00
849 1 0.00
850 3 0.00
851 178 0.05
852 3 0.00
853 1 0.00
855 10 0.00
856 2 0.00
857 2 0.00
859 175 0.05
860 4 0.00
861 2 0.00
862 1 0.00
863 2 0.00
864 214 0.06
865 60 0.02
866 417 0.12
867 50 0.01
868 200 0.06
869 369 0.10
870 5 0.00
871 1 0.00
872 5 0.00
873 162 0.05
875 37 0.01
876 70 0.02
877 91 0.03
878 175 0.05
879 1 0.00
880 3 0.00
881 2 0.00
886 1 0.00
889 1 0.00
891 8 0.00
893 1 0.00
894 3 0.00
895 1 0.00
896 4 0.00
897 174 0.05
898 106 0.03
899 45 0.01
900 5 0.00
901 14 0.00
902 106 0.03
903 98 0.03
904 39 0.01
906 1 0.00
907 173 0.05
911 10 0.00
912 4 0.00
913 5 0.00
914 5 0.00
915 218 0.06
916 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (866 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCGGATAGGACCGAGGGTTGCGGCAG
CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGA
ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGCTGTGCGCACATAATGTG
CGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCACTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
ACAGCATGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAG
CGCCCGAACGCTCATTTCGTG
Found at i:17315541 original size:26 final size:26
Alignment explanation
Indices: 17315505--17315555 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17315495 TGACTTAGGC
17315505 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
* *
17315531 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17315556 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:17316447 original size:26 final size:26
Alignment explanation
Indices: 17316418--17316470 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17316408 GTTGACTTAG
*
17316418 GCATACGGAGTTCATTGCC-AGTCTAA
1 GCATACGGAATTCATT-CCTAGTCTAA
17316444 GCATACGGAATTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
17316470 G
1 G
17316471 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:17318881 original size:26 final size:26
Alignment explanation
Indices: 17318852--17318904 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17318842 GTTGACTTAG
*
17318852 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17318878 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17318904 G
1 G
17318905 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17320680 original size:26 final size:26
Alignment explanation
Indices: 17320644--17320694 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17320634 TGACTTAGGC
*
17320644 ATACAGAGTTCATTCATAGTCTAAGT
1 ATACAGAGTTCATTCACAGTCTAAGT
* *
17320670 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCACAGTCTAAG
17320695 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCACAGTCTAAGT
Found at i:17321575 original size:26 final size:26
Alignment explanation
Indices: 17321539--17321591 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17321529 GTTGACTTAG
* *
17321539 GCATACTGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
*
17321565 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
17321591 G
1 G
17321592 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:17323784 original size:903 final size:898
Alignment explanation
Indices: 17318008--17327428 Score: 12643
Period size: 896 Copynumber: 10.5 Consensus size: 898
17317998 ATTCCCAGTA
* * * * *
17318008 GGACCAGACCGAGGGTTGC-AGCAGCACATGCTGGTCTTGGGCATGTGCTGGTGCCGTATTTGTC
1 GGACCAGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTC
** * * * *
17318072 TTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCC-AGT
65 TTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-C
** * *
17318136 GATCGGGGGGGCCGGGGGGGTGTGCAAACATGATGTACGATGGGTCCTGGTATTTGGCCCTTATA
129 GATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
* * *
17318201 TTGGTCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
193 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
** * *
17318266 CAGGTTTGCTGCCAGTAGCCATTAAAAAGTCTGAAATGGGGACACTTTTTTCAAATGGTGATAAA
258 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * **
17318331 ATCTTGAACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAACCATCAC
323 ATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
17318396 GTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCACGAACCGCAAAAAT
387 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
**
17318461 TTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
452 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
17318526 GGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGTAGAAATATGAAGACGTGCC
517 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * *
17318591 TAGACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGC
582 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * * *
17318656 CCGCCCGCCCG-CTCGCTC-ATTGCGTCGGTTGCCTTAGGCATACGGAGTTCATTCCCAATCTAA
647 CCGCCCG-CCGTC-CGCCCGTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
17318719 GATCCGACTGGATTGAGGGTTGCGGTAGTAGGATCAGCAGCACGCAGAGGGGGACCCGATCGATC
710 GATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATC
* * * ** * * * *
17318784 GCCGACTTGCGCATCCCGCCCCTCTGGCCGATTGAGCACCTGCACGCTCGTTCCATGGGTTGACT
775 CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* *
17318849 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATC
840 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
17318908 GGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCGCATTTTTC
1 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTC
* *
17318972 TTCGTCGGGGCACCATTGTCGGAGCATCGCCGGAGAACCGGACCGACGGCATTGGGGTTCCGACG
65 TTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
** *
17319037 ATCGGGGGGGCCGGGGGACGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
130 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATT
* *
17319102 GGCCCCTTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACA
195 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
17319167 GGTTTGTTGCCAGTAGCCATTAACGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
260 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
17319232 CTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGCGTGCCAAGAAAAATACAAGGACCACGT
325 CTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * *
17319297 CTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAGAATTTAAAAAAATCCCGAACCACAAAAAGTT
389 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
** *
17319362 TTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGG
454 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
17319427 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
519 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * * *
17319492 AACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAATGCCG
584 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* *
17319557 GCCCGCCCGTCCGCTCG-TTTCGTCGGTTGGCTTAGTCATACGGAGTTCATTCCCAGTCTAAGAT
649 GCCCG-CCGTCCGCCCGTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * *** * * *
17319621 TGGACCGGACCGAGGGTTTCAACAGTAGGATC-GACAGCACGTAGAGGGGGACCCGACCGATCCT
713 CAGACCGGACCGAGGGTTGCGGTAGCAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCC
* ** * * * * *
17319685 CGACTTGCGCATTTCGCCCCTCTGGCCAGCTGAGAGCCTGCACGCTCGTTTCATGGGTTGACTTA
777 CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
17319750 GGCATACGGAGTTCATTACCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAACACTC
842 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TC
* * * * * * *
17319808 -AATC-GAACCAAGGGTTAC-AGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTT
1 GGACCAG-ACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
* *
17319870 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-A----TTTGGGGTTCCGAC
64 CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
** * * *
17319930 GATC-GGAAGGCCAGGAGGGGTGTGCGCACATGATATGCCATGGGTGCTGGTACTTGGCCCTTAT
129 GATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTAT
* ** **
17319994 ATTGGCCCCCTATCCCTCATTAAACCTCTCGAACTCACACCCAGTTAAAGAGCATTTGAGATTTT
192 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
17320059 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGGAATGGGGACACTTTTTTCGAATGGTCACAA
257 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
17320124 AATCTTGTACACTTTGAATTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATTACAAGGATC
322 AATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAA-TACAAGGATC
*
17320188 ACGTCTACCAAGTTTGGGGCCAAAACTCCTAT-CAAAAAAATTTTAAAAAATC-CTGAACCGTAA
385 ACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCAAAAAAATTTTAAAAAATCTC-GAACCGCAA
** * * *
17320251 AAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACATGAAGGCT
448 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
17320316 TAAGGGACCATTGTATTATTTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATG
513 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
*
17320381 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTA
578 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* *
17320446 GTGCCCG--C-CCGTCCGCTC-TTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
643 GTGCCCGCCCGCCGTCCGCCCGTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * * * * *
17320507 AAGA-CTGGATCAGACCGAAGGTTGTGGCAGCAGGATC-GATAGCATGCAGAGGGGGGCCTGGCC
708 AAGATC-AGACCGGACCGAGGGTTGCGGTAGCAGGATCAG-CAGCACGCAGAGGGGGACCCGACC
* *
17320570 GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTT
771 GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* ** *
17320635 GACTTAGGCATACAGAGTTCATTCATAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATC
836 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
17320698 GGACCAGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-
1 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCT
* ** * **
17320762 TCTGTCGGGGCACCATCGTCAGAGCATCATCGGAGAACTTGACCGGTGGCATTGGGGTTCC-AGC
66 TC-GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-C
** * *
17320826 GATC-GGGGGGCTAGGGGGTGTGCACGCATGATGTACGATGGGTGCTGGTACTTGGCCCTTATAT
129 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATAT
*
17320890 TGGCCCCTTATCCCTCATCAAACCAT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
194 TGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
17320954 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
258 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
17321019 ATCTTGTACACTTTGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAGAAAAATACAAGGATCAC
323 ATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCAC
*** *
17321084 GTCTACCAAGTTTGGGGCCAAAACT-CTTTTGAAAAAATTATAAAAAATCTCGAACCGCAAAAAG
387 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* * *
17321148 TTTCAAAAATCCTAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
452 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
17321213 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATCAAGATGTGCC
517 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
** * * *
17321278 TAAACCCACCTACCACCCTATCGATCCACAACTTACGCATCCCGTCTCTCTGGCCGACGTTGTGC
582 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* *
17321343 CCGCCCGCCCGTCCGCTCC--TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAA
647 CCGCCCG-CCGTCCGC-CCGTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * **
17321406 GATCAGACCGAACCAAGGGTTGTGGAAGCAGGATCAACAGAACACAGACTGGGACCCGACCGATC
710 GATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATC
* * * *
17321471 CCCGGCTTGCACATCCTACCCCTCTGGCCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACT
775 CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * *
17321536 TAGGCATACTGAGTTCATTCCCAATCTAAGCATACGGAGTTAATTCCCAGTCTAAGATT
840 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
*
17321595 GGACCAG---GAGGGTTGCGACAGCACATGCTGCGCTCG-GCCATGTGCTGGTGCCGCATTTTTC
1 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAG-CATGTGCTGGTGCCGCATTTTTC
* ** * * *
17321656 TTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCTGACG
65 TTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * * ** *
17321721 ATCGGGGGAGCCGGGGGGTGTGCGCACATGGTGTGCGACAGGTGCTAGTACTTGGCCCTTATATT
130 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATT
*
17321786 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
195 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
17321851 GGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
260 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
17321916 CTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTGCATTCCCAA-AAAAATACAAGGATCATG
325 CTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGCA-TGCCAACAAAAATACAAGGATCACG
* * * * *
17321980 TCTACCAAGTTTGGGACCAAAAATTCTTCCAAAAAAAATTTT-AAAAATCCCGAACCGTAAAAAG
388 TCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
** * *
17322044 TTTTGAAAATCGTGAAAAATAGAAGACGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAG
452 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
17322109 GTACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATTTGCC
517 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * *
17322174 TAAACCCACCTACCACCCTATCTATCCACAGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGC
582 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
** * *
17322239 CCATCCG-C--CCGCTCG-TTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
647 CCGCCCGCCGTCCGCCCGTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * *
17322300 TCAAACCGGATTGAGGGTTGTGGCAGCAGGAT-AGGCAGCACACAGAGGTGGACCCGACCGATCC
712 TCAGACCGGACCGAGGGTTGCGGTAGCAGGATCA-GCAGCACGCAGAGGGGGACCCGACCGATCC
* * * ** * *
17322364 TCGGCTTGCGCTTCCCGCCCCTCTGGCCGGCTGATAGCCCGCACGCACGTTTCATGGGTTGACTT
776 CCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* *
17322429 AGGTATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
841 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
17322487 GGATC-GAACCGAGGGTTGCTACAACACATGCTAGGTTC-AGGAATGTGCTGGTGCCGTATTTTT
1 GGACCAG-ACCGAGGGTTGCGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTT
* * * * *
17322550 CTCCGTCGAGGCACCATCGCCGTAGCATCGCCGGAGAACCTGACCGACGGCATTGGCGTTCC-AG
64 CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-
* *
17322614 TGATCGGGGCGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTAT
128 CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTAT
* *
17322679 ATTGGCCCCCTATCCCTCATCAAACCTCGTGAACTCACACACCCTTAAAGAGCATTTGAGATTTT
192 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
17322744 ACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGGCACAA
257 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
17322809 AATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCA
322 AATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * * *
17322874 CGTCTACCATGTTTGGGCCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAACTGTAAAAA
386 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
* * * * *
17322939 GTTTCAAAAATCTTGAAAAATAAAAAACGAGCCGTCTTACCATGAAACTTCATGTGAAGGCTTAA
451 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
17323004 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
516 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * * **
17323069 CTAAACACACCTACCATCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCAACGTAGTG
581 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
*
17323134 CCCGCCCGTCCGTCCGCCCGTTTAGTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTC
646 CCCGCCCG-CCGTCCGCCCG-TT--TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * * * * *
17323199 TAAGATTGGACCCGACCGAGGGTTGCGGTGGAAGGATCAGCAGCACGTAGAGGGGGACCCGGCCG
707 TAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCG
* * * * *
17323264 ATCCCCGGCTTGCGCATCCCACCCCTCTGACCGGCTGAGCGCTCGTACGCTCGTTTCATGGGTTC
772 ATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
17323329 ACCTAGGCATACGGTGTTCATTCCCAGTCTAAGCACACAGAGTTCATTCCCAGTCTAAGATC
837 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
17323391 AGACCAGACCGAAGGTTACGATAGCACATGCTAGGCTCGAGCATGTGCTGCTGCCGCATTTTTCT
1 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCT
* ** * * *
17323456 TCGACGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGAAGTCATTGGGGTTCCGACGA
66 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
17323521 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTG
131 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTG
17323586 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
196 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
17323651 GTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACAATTGTTTCAAATGGTCACAAAATC
261 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
17323716 TTGTACACTTCGAGTTTTTAGCTGATATTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
326 TTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
**
17323781 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-TCCGAACTACAAAAAGTT
390 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT-CGAACCGCAAAAAGTT
*
17323845 TTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
454 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
17323910 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACGTGACTA
519 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* *
17323975 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCAGCGTAGTGCCC
584 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * * * *
17324040 GCCCACCTGTCCGCCTGCTCCATTCGTCGGTTGGCTTAGGCATATGGAGTTCATTTCCAGTATAA
649 GCCCGCC-GTCCGCCCG-T--TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * **
17324105 GATCAGACTGGACAGAGGGTTGTGGTAGCAGGATCGGCCAGCAAGTAGAGGGGGACCCGATTGAT
710 GATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGAT
* *
17324170 CCTCGGCCTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
774 CCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* *
17324235 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATC
839 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
17324295 GGACCAAACTGAGGGTTGCGGCAGCACATCCTGGGCTC-AGGCATGTGCTGGTGCCACATTTTTC
1 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTC
** * * * *
17324359 TTCACCGGGGTACCATCGTCGGAGCATCGCCAGAGAACCTGATCGACGGCATTGGGGTTCCGGCG
65 TTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
17324424 ATC--GGGGGCCGGGGGGTGTGTGCGCACATGATGTCCGATGGGTGCTAGTACTT-GCCCTTATA
130 ATCGGGGGGGCC-GGGGG-GTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
* *
17324486 TTGGCCCGCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
193 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
17324551 CAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACATTTTTTTCAAATGGTCACAAA
258 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
17324616 ATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGTCAACAAAAATACAAGTATCAA
323 ATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
17324681 GTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAATAG
387 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* *
17324746 TTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAC
452 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
17324811 GGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
517 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * * *
17324876 TAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATTCTGTCTCTCTAGTCGGCGTAGTGC
582 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* *
17324941 CCGCCCGCCAGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCA
647 CCG--C-CC-G-CCGTCCGCCCG-T--TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * *
17325006 GTCTCAGATCAGAACGGATC-AGGGGTTGTGGCAACAGGATCAGCAGCACGCAGAGGGGGACCCA
704 GTCTAAGATCAGACCGGACCGA-GGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCG
* *
17325070 ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
768 ACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
17325135 GTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAATAT
833 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
17325199 C
898 C
** * * *
17325200 GGACTGGACAGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCT
1 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCT
** ** * *
17325265 TCACCGGGGCACCATCGTCGGAGCATCGCCGTTGAACCTGACCGGCGACATTGGGGTTCCGAC-A
66 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
*
17325329 GTCGGGGGGGCGCCGGGGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTACTTGGCCCTTATA
131 -TC-GGGGGG-GCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
* *
17325394 GTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCA-ATCCCCCTTAAAGAGCATTTGAGATTTT
193 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTT
* *
17325458 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAA
257 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* ** * * *
17325523 AATCTTGAACACTTCGAGTTTTTAATTCAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCA
322 AATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * *** * *
17325588 TGTCTACCAAGTTTGGGGCCAAAACAACCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
386 CGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAA
* *
17325653 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAGGTGAAGGCTTA
450 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
17325718 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTG
515 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * * *
17325783 CCTAAACCCACCTACCACCTTTTCGATACACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGT
580 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * ** ** *
17325848 GCCCGCCTGCCTGCCCGCTTGTTTT-GTCGGTTGGCTTCA-GCAT-CAAAGTTTATTCCCAGTCT
645 GCCCGCCCGCC-GTCCGCCCGTTTTCGTCGGTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCT
* ** * * * * * *
17325910 AAGATCAGACAGGATTGAGGGTTGCGGCAACAGGATCGGCAGCATGTAGAGGGGGACCCGATCGA
708 AAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGA
* * * * *** * *
17325975 TCCACGGCTTGCGCATCCCGCCCGTCTGGCCGGCTGAGTGCCTATAAGCTCATTTCGTGGGTTGA
773 TCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
17326040 CTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
838 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
17326101 GGACCGGACCGAGGGTTGTGGCAGCACATACTGGGCTCGAGCATCTGCTGGTGCCGCATTTTTCT
1 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCT
* ** * *
17326166 TC-ACTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC-AGCAACATTAGGGTTCCGGC
66 TCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGAC
* * * *
17326229 GATC--GAGGGCC-GGGGGTGTGCGC-CAATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATG
129 GATCGGGGGGGCCGGGGGGTGTGCGCAC-ATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
*
17326290 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
193 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * **
17326355 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGATACTTTTTAAAAATGGTCACAAA
258 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
17326420 ATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCAC
323 ATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
17326485 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAACAATCCCGAACCGCTAAAAG
387 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* * * *
17326550 TTTTGAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGCAACTTCACGTGAAGGCTTAG
452 -TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
17326615 GGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCACGCAGAGATATGAAGATGAGC
516 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * *
17326680 CTAAACCCACCTACCACCCTATCGATCCACTGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTG
581 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* *
17326745 CCCGCCCGCCCG-CCTGCACGCTTGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGT
646 CCCGCCCG-CCGTCC-GC-C-CGT-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
17326809 CTAAGATCAGACCGAACTGAGGGTTGCGATAGCAGGATCTGCAACATGCAGAGGGGGACTCGACC
706 CTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACC
* * * *
17326874 GATCCACGGCTTACACATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTT
771 GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
17326939 GACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
836 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * *
17327002 AAATC-GAACCGAGGGTTG-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC
1 GGACCAG-ACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTC
**
17327065 TTCGTCGGGGCACCA---TC---G--T---CGGAGAACCTGACCGGTGGCATTGGGGTTCC-AGC
65 TTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-C
* * * *
17327118 GATC-AGGGGG-CGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTATAT
129 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
17327181 TGGCCCCCTTTCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTAC
194 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
17327246 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAA
259 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
17327311 TCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGAATCACG
324 TCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* *
17327376 TCTACCAAGTTTGAGGCCAGAAA-GCCTTCCAAAAAAATTTTAAAAAATCTCGA
388 TCTACCAAGTTTGGGGCCA-AAACTCCTTCCAAAAAAATTTTAAAAAATCTCGA
17327429 GCCGGCGTAG
Statistics
Matches: 7564, Mismatches: 830, Indels: 264
0.87 0.10 0.03
Matches are distributed among these distances:
889 31 0.00
890 281 0.04
891 304 0.04
892 212 0.03
893 220 0.03
894 375 0.05
895 881 0.12
896 1117 0.15
897 231 0.03
898 10 0.00
899 766 0.10
900 371 0.05
901 339 0.04
902 19 0.00
903 994 0.13
904 593 0.08
905 137 0.02
906 133 0.02
907 110 0.01
908 217 0.03
909 223 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCT
TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
CCGCCGTCCGCCCGTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
TTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
Found at i:17324275 original size:26 final size:26
Alignment explanation
Indices: 17324239--17324291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17324229 GTTGACTTAG
17324239 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17324265 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17324291 G
1 G
17324292 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17325181 original size:26 final size:25
Alignment explanation
Indices: 17325145--17325195 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
17325135 GTTGACTTAG
*
17325145 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
17325171 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
17325196 TATCGGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:17326081 original size:26 final size:26
Alignment explanation
Indices: 17326045--17326097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17326035 GTTGACTTAG
* *
17326045 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17326071 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17326097 G
1 G
17326098 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17326982 original size:26 final size:26
Alignment explanation
Indices: 17326946--17326998 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17326936 GTTGACTTAG
17326946 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17326972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17326998 G
1 G
17326999 ATCAAATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17329867 original size:26 final size:26
Alignment explanation
Indices: 17329831--17329883 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17329821 GTTGACTTAG
* *
17329831 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17329857 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17329883 G
1 G
17329884 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17330770 original size:26 final size:26
Alignment explanation
Indices: 17330734--17330786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17330724 GTTGACTTAG
*
17330734 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17330760 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17330786 G
1 G
17330787 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17332084 original size:901 final size:897
Alignment explanation
Indices: 17328954--17336080 Score: 4998
Period size: 903 Copynumber: 8.1 Consensus size: 897
17328944 GTTGGCTTAG
* * **
17328954 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
17329019 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCGCC-AGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCGTCGAAGCATCGCCGA-AG
* * * *
17329083 AACCTGACCGACGGCGTTGGGGTTCCAGCGATCGGGGGGGCCGCCGGGGGGTGTGCGCACATGAT
130 AACCTGACCGGCGGCATTGGGGTTCGA-CGATC-GGGGGGCCG--GGAGGGTGTGCGCACATGAT
*
17329148 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
191 GTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
17329213 CACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGG
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
* * * * *
17329278 AATCGAGACACTTTTTTCAAATGGTCACAAAATCTGGTACAGTTCGATTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
17329343 TTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAACCCTTCCGAA
386 TT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAA
* * * * *
17329408 AAAATTTTAAAAAATCTCGGACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGATTCAT
449 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
17329473 CTTGCGCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCGATAAAAAT
514 CTTGC-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* **
17329538 GGCATTGGCATGCAGAAATGGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
578 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * **
17329603 TGCGCATCCTGTCTCTTTGG-CCAGTGTAGTGCCCG---TCCGCCCGTCCACTCGTTTTGTCGGT
643 TGCGCATCCCGTCTCTCTGGTCGA-CGTAGTGCCCGCCCCCCACCCGTCCGCTCGTTTCATCGGT
* *
17329664 TGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCA-A-C
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-GGATCGGACCGAGGGTTGC-G-ATAGC
* * * *
17329727 AGGATCGGCAGCACGTAGAGGGGGACTTGGCCGATCCTCAGCTTGTGCATCCCGCCCCTCTAGCC
769 AGGATCGGCAGCACGTAGAGGGGGACCTGGTCGATCCTCAGCTTGCGCATCCCG-CCCTCTGGCC
*
17329792 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
833 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17329857 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-TCGGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGTAGCACATGCTGG
* * * * * *
17329921 GCTCAGACATGTGCTGGTGCAACATTTTTCTTCA-CTGGGCCACCATCGTCGAAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGG-CACCATCGTCGAAGCATCGCCGAA
* * *
17329985 GAACCTGACAGGCGGCATTGGGGTTCTGGCGAT-GGGGGGCCGGG-GGGTATGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTC-GACGATCGGGGGGCCGGGAGGGTGTGCGCACATGATGT
* * *
17330048 GCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * *
17330113 CA-CCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTCGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
17330177 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTT
* * * * *
17330242 CTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGACAAAACTCCTTTCGAAAA
387 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAA
* *
17330307 AATTTTAAAAAATC-CTGAACCGTAAAACGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
451 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
17330371 TTGCCATGAAACTTCATGTGAAGGCTCAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
17330436 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
580 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
17330501 CCCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCCCC-CGCCGGCCATCCGCTCGTTTCATCG
645 CGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCCCCAC-CC-G---TCCGCTCGTTTCATCG
* * *
17330565 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACTGAGGGTTGCGGTAGC
705 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TGGATCGGACCGAGGGTTGCGATAGC
* * * *
17330630 AGGATCGGCAGCACGTAGAGGGGGCCCTGATCGATCCCCAGCTTGCGCATCCTGGCCCTCTGGCC
769 AGGATCGGCAGCACGTAGAGGGGGACCTGGTCGATCCTCAGCTTGCGCATCC-CGCCCTCTGGCC
* * * * * *
17330695 GGCTGAGCGTCCGCGCGCTCATTTAGCGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
833 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
17330760 GCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCGGGTCGAGGGTTGCGATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGTAGCACATGCTGG
* ** * * * *** *
17330824 GCTCGGGCATGTGCTAGTGCCGTATTTTTTATTCGTC-GAGGCACCATCGTCGGAGCATTATCGG
65 GCTCGGGCATGTGCTGGTGCCACA-TTTTTCTTCATCAG-GGCACCATCGTCGAAGCATCGCCGA
** *
17330888 AGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGAGGGGTGTGCACACATGAT
128 AGAACCTGACCGGCGGCATTGGGGTT-CGACGATCGGGGGGCCGGGA-GGGTGTGCGCACATGAT
* *
17330953 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
17331017 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
*
17331082 AATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TT
* * *
17331147 TTGTGCATGCCAA-AAAATTACAAGGATCACGTCTACCAAATTTGGGGCCAAAATGCCTTCCGAA
385 TTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAT-CCTTCCGAA
* *
17331211 AAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
449 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
*
17331276 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
17331341 GCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCAACCTACCACTCTATCGATCCACGGCTT
579 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
17331406 GCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCACCCACCCGTCTGCTCGTTTCATCAGAT
644 GCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCC-CCCACCCGTCCGCTCGTTTCATCGGTT
* *
17331471 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTGAATCGGACCGAGGGTTACGATAGCAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TGGATCGGACCGAGGGTTGCGATAGCAGG
** * * * ** * *
17331536 ATCGATAGCACGCAAAGGGGGACCTGGTCGATTCTCAAATTACGCATCCCGCCCTCTGGCCGACT
772 ATCGGCAGCACGTAGAGGGGGACCTGGTCGATCCTCAGCTTGCGCATCCCGCCCTCTGGCCGGCT
* * * *
17331601 GAGTGCCCGTACGCTTGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17331662 GGAAACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACGGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * * *
17331727 CTCGGGCATGTGTTGGTACCACATTTTTCTTCACCAGGGCACCATC-ACTGGAGCATCGCCGAAA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCGTC-GAAGCATCGCCGAAG
* * **
17331791 AACCTGATCGGGGGCATTGGGGTTTCGACGATCGGGGGGTGGGGAGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGG-TTCGACGATCGGGGGGCCGGGAGGGTGTGCGCACATGATGTG
* ** *
17331856 CGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAGCTCAC
194 CGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
17331921 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTATCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
*
17331986 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
* * *
17332051 GCATGCCAACAAAACTATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAA
* * * * *
17332116 TTTTAAAAAGTCCCAAACCGTAAAAAGTTTAAAAAATCATAAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
17332181 CCAAGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTTTGAATTTACAAGCAATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * * *
17332246 TGCCACACAAAAATTTGAAGATGTGCCGAAACCCACCTATCACCCTATCGATCCACGGCTTGTGC
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
17332311 ATCTCGCCTTTCTGG-CTGGCGTA------G-----CACCCGCCCGCTCGTTTCATCGGTTGGCT
648 ATCCCGTCTCTCTGGTC-GACGTAGTGCCCGCCCCCCACCCGTCCGCTCGTTTCATCGGTTGGCT
* * * * *
17332364 TAGGCATACAGAGTTCATTCCCAGTATAAAATAGGATCGAATCGAGGG-T----TA-C---A---
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGAT-GGATCGGACCGAGGGTTGCGATAGCAGGATCG
* * * * *
17332417 GCACCACGTTGAGGGGGACTCAGCT-GATCC-CTGGCTTGCGCATCCTAC-CCCTCTGGCCGGCT
776 GCAGCACGTAGAGGGGGAC-CTGGTCGATCCTC-AGCTTGCGCATCC--CGCCCTCTGGCCGGCT
* * * *
17332479 AAGCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
17332540 G-AT-C--AG---A---CCAGAC--CGA---GACTTG-CCGTA-TTTTTCTTCGTCAGGGCACCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG-AGGGTTGC--GGT-A--GCA-CA
* * * * * * ****
17332588 TCGCCAGAGCATC-GCCAGAGAGCCTGACCG-GCGACATTGGGGTT--TC--GGCA--ATCG--G
59 T-G-CTGGGC-TCGGGCA-TGTG-CTG---GTGCCACATTTTTCTTCATCAGGGCACCATCGTCG
* * * **** ** * * ** * * * *
17332643 --G-GTGGCCG-GGGGGTTGTGC-AC-ACA-TGATG-T-G-CGA-C-GGGTGCAGGTA--CT-TG
116 AAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCGACGATCGGGGGGCCGGGAGGGTGTG
* * * * ** ** * * *** **
17332693 -GC-CCT--TAT---ATTGG-CCCCCTATCTCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
181 CGCACATGATGTGCGATGGGTGCCGGTA-CT-T-GGC---CCT-TA-TA-T-TGGCCCCC-TATC
*** * * ** * *** ** * * * * *** *
17332750 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG--TCTGAAATGGGGACA-C
235 CCTCA--TCAAACCTCA-AGAACT-C-A-CA--CCCCCTTAAAGAGCATTTGAGAT-TTTACAGG
* * * * ** ** *
17332812 TTT-TTTCAAATGGTCA-CAAAATCTTATACACT-TC-GAGTTTTTAGCTTGA-ATTTTTTGTGC
291 TTTGCTGC-CA--GT-AGC--AA--TTA-A-AGTGTCTGA---AAT-G-GGGACACTTTTT-T-C
* ** * * *** *** ** *
17332872 --AT-GCCAACAAAAATACAAGGATCACGTCTACAAGTTTGGGGCT-AAAAATCCTT-C---CGA
339 AAATGGTC-AC-AAAAT-CTTGTA-CAC-T-T-CGAGTTTTTAGCTGAATTTTTTTTGCATGCCA
* ** ** * * ** * * * **
17332929 A-AAAATTTTAAAAATC-CGAACAGAAAAAATTT----CAAAAAT-CGT--G-AAAAA-TAGAAA
397 ACAAAAATACAAGGATCACG-TC-TACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTAAA
* * * ** ** ** * ** *
17332983 ACGAGTCGTCTGCCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
460 A--A---ATCT--C---GAACCGT-A--AAAAGTTTTAA-AAATCA-TG-A--AAAATAGAA---
** * * * * * * * *** **
17333048 ATAAAAAT-GGCATTGGCATGCAGAA-AT-A--TGAA-G---ATGTG-CCA---AACCCACCTAC
504 A-ACGAGTCGTC-TTGCCATG-A-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *** * * * * * * ** * *
17333100 CACCCTATCGATCCACGG-ATTGCGCATC-CCGCCACTCTG--G-TCG-GCGTAGTGCCCGCCCA
565 AAGCC-AT--AAAAATGGCATTG-GCA-CGCAG-AAATATGAAGAT-GTGCCTA-AACCCACCTA
* * * * ** * **
17333159 CC-CGCTCGTTTCG-T-CAGTTGGCTTAG-GCATACGGAGT-TCAT--TC--C-CAGT-CTAAG-
622 CCAC-C-C-TATCGATCCA--CGGCTT-GCGCATCCCGTCTCTC-TGGTCGACGTAGTGC-CCGC
** ** * *** * ** * * ** *
17333212 ATCATATCAAACTG-AGGGTT--GCGG-CAGC--AGG-AT-CGGCAG--CA--CGCAG----AGA
679 CCCCCACCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGA
* * * *** * * * * **
17333261 GGGATCCGATCGA-TCCT-CGACTTATGC---ATC--CTGCCCCTCTG-GCTGG--CTGAG-CG-
743 TGGATCGGACCGAGGGTTGCGA--TA-GCAGGATCGGCAGCACGT-AGAGGGGGACCTG-GTCGA
* * ** ** * * * * ***
17333314 CCCGCACGCTTGTTTCAT---G-GGT-TGACTTAGGCAT-A-CG---G-A-GTTC-ATTC--CCA
803 TCCTCA-GCTTG-CGCATCCCGCCCTCTGGC--CGGC-TGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
17333364 AT--C-TAAGCATACGGAGTTCATTCTCAGTCTAA
863 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
17333396 G-AT-C-G-G---------A--C------C---C--GACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
** * * * * * *
17333435 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGTAGCATCGTCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCGTCGAAGCATCGCCGAAGA
* * * * *
17333500 ACCTGACCGACGACATTGGGGTTCTGACGATCCAGGGGACCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTC-GACGAT-CGGGGGGCCGGGAGGGTGTGCGCACATGATGTG
* *
17333565 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * ** * *
17333630 ACCCCTTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGTGAGTAGCCATTAAAGAGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
* *
17333695 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGATTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTT
* * *
17333760 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACACCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAA
* * * * * *
17333825 ATTTTAACAAATCTCAAACCGAAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
17333890 GCCAAGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
17333955 TTGGCACCCAAAAATTTGAAGATGTGCCAAAATCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** ** * *** *
17334020 CATCCCACCTCTCTGGTCGACGTAGCACCCGCCCTCCCGCCTACCCGCTTGTTTCATCGGTTGGC
647 CATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCC-CCCACCCGTCCGCTCGTTTCATCGGTTGGC
*
17334085 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGAACCGAGGGTT--G-T----GG--C
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-GGATCGGACCGAGGGTTGCGATAGCAGGATC
* * * * * ** * * * *
17334141 --C-CCACGCAGAGGGGGACCCGATTGATTGTCGGGTTGCGCATCCCACCCCTCTGGCCGGCTAA
775 GGCAGCACGTAGAGGGGGACCTGGTCGATCCTCAGCTTGCGCATCCC-GCCCTCTGGCCGGCTGA
* * ** * *
17334203 GCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTTCCTGTCTAA
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17334262 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-T----T-G--C---C---G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * *
17334313 -T-----A--T--T--T------TTTTTCGT--T-GGGGCACCATCGCCGGAGCATCGCC-AGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCGTCGAAGCATCGCCGA-AG
*
17334356 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGTGG-CGGG-GGGTTGTGTGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTT-CGACGATCGGGG-GGCCGGGAGGG-TGTGCGCACATGATG
* * **
17334419 TGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
17334484 AAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
*
17334548 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
17334613 TGTGAATCCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAAATCCTTTCAAAA
387 T-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAATCCTTCCGAAA
* * * * *
17334678 AAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA-AAAACGAGTCGTC
450 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
17334742 TTGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
17334807 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTG
580 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
17334872 TGCATCCCGTCTCTTTGGACGGCGTAGTGCCCG---CCCA----TCCGCTCGTTTCGTCAGTTGG
645 CGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCCCCACCCGTCCGCTCGTTTCATCGGTTGG
* * * * * * *
17334930 CTTGGGCATACGGAGTTCATTCCTAGTGTAAGATTAGACCGGACCGAGGGTTGC-AGCAGCAAGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TGGATCGGACCGAGGGTTGCGA-TAGCAGGA
* * * * * * *
17334994 TCGGCAGCAGGCAGAGGGGGA-CTCGGCCGATCC-CTGGCTTGCGCATCCCGCCCCTCTAGCTGA
773 TCGGCAGCACGTAGAGGGGGACCT-GGTCGATCCTC-AGCTTGCGCATCCCG-CCCTCTGGCCGG
* * **
17335057 CTGAGCGCCTGGACGCTCGTTTCGTGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAA
835 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17335120 GCATACGGACTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * ** ** * *
17335185 CTCAGGCATGTGCTGGTGTCGTATTTTTCTTTGTCGGGGCACCATCG-CTGGAGCATCGCC-AGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCGTC-GAAGCATCGCCGA-A
* * * *
17335248 GAACCTAACCGACGGCATTGGGGTTCCGATGATCGAGGGGGTCCGGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTT-CGACGATCG-GGGGG-CCGGGAGGGTGTGCGCACATGAT
* * * * *
17335313 GTGTGATGGGTGCTGGCACTAGGCACTTATATTGG-CCCCTAATCCCTCATCAAACCTCAAGAAC
191 GTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCAAGAAC
* * *
17335377 TCACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
* *
17335442 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACATCGAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
17335507 TTTGTCCAGGCTAAAAAAAATACAAGGATCACATCTTCCAAGTTTGGGGCCAAAACTCCTTCCGA
385 TTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGA
* * ** * * *
17335572 AAAAATTTCAAAAAATC-CCAAATG-ACAAAAGGTTTTGAAAATTACGAAAAATAGAAAAACGAG
448 AAAAATTTTAAAAAATCTCGAACCGTA-AAAA-GTTTTAAAAATCATGAAAAATAG-AAAACGAG
* *
17335635 TCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAA
510 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
17335700 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATG
575 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * ** *
17335765 GCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTG---G--------CCGCCCGCTTGTTTTGTCA
640 GCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCCCCACCCGTCCGCTCGTTTCATCG
* ** * * * * *
17335819 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAACAGACCAGATCGAGGGTTACGACAGC
705 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATGGATCGGACCGAGGGTTGCGATAGC
* * * * * * * * * *
17335884 AGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCTCAGGTTACGCATGCCACCTTTTTGGCC
769 AGGATCGGCAGCACGTAGAGGGGGACCTGGTCGATCCTCAGCTTGCGCATCCCGCC-CTCTGGCC
* * * * *
17335949 GACTGAGCGACCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAA
833 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17336014 GCATACGGAGTTCTTTCCTAGTCTAAGATCGGACTAGACCGAGGGTTACGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
17336079 CT
66 CT
17336081 AGGGTTACGG
Statistics
Matches: 4876, Mismatches: 920, Indels: 865
0.73 0.14 0.13
Matches are distributed among these distances:
826 2 0.00
827 2 0.00
828 10 0.00
829 3 0.00
830 3 0.00
831 1 0.00
832 6 0.00
833 2 0.00
834 41 0.01
835 19 0.00
836 29 0.01
837 20 0.00
838 23 0.00
839 13 0.00
840 31 0.01
841 22 0.00
842 11 0.00
843 11 0.00
844 16 0.00
845 12 0.00
846 76 0.02
847 8 0.00
848 27 0.01
849 22 0.00
850 30 0.01
851 12 0.00
852 12 0.00
853 20 0.00
854 171 0.04
855 188 0.04
856 181 0.04
857 72 0.01
858 143 0.03
859 21 0.00
860 23 0.00
861 28 0.01
862 14 0.00
863 17 0.00
864 8 0.00
865 22 0.00
866 48 0.01
867 14 0.00
868 21 0.00
869 26 0.01
870 44 0.01
871 18 0.00
872 22 0.00
873 25 0.01
874 41 0.01
875 28 0.01
876 27 0.01
877 32 0.01
878 81 0.02
879 3 0.00
880 9 0.00
881 9 0.00
882 11 0.00
883 3 0.00
884 6 0.00
886 1 0.00
887 1 0.00
888 2 0.00
889 65 0.01
890 8 0.00
891 1 0.00
892 11 0.00
893 62 0.01
894 235 0.05
895 132 0.03
896 307 0.06
897 227 0.05
898 249 0.05
899 6 0.00
900 66 0.01
901 461 0.09
902 146 0.03
903 501 0.10
904 61 0.01
905 16 0.00
906 292 0.06
907 185 0.04
908 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCGTCGAAGCATCGCCGAAGA
ACCTGACCGGCGGCATTGGGGTTCGACGATCGGGGGGCCGGGAGGGTGTGCGCACATGATGTGCG
ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGTCGACGTAGTGCCCGCCCCCCACCCGTCCGCTCGTTTCATCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATGGATCGGACCGAGGGTTGCGATAGCAGGATCGGCAGC
ACGTAGAGGGGGACCTGGTCGATCCTCAGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17333374 original size:26 final size:26
Alignment explanation
Indices: 17333344--17333396 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17333334 GTTGACTTAG
17333344 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
17333370 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17333396 G
1 G
17333397 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17334265 original size:26 final size:26
Alignment explanation
Indices: 17334236--17334288 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17334226 GTTGACTTAG
* *
17334236 GCATATAGAGTTCATTTCCTGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
*
17334262 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
17334288 G
1 G
17334289 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:17337682 original size:26 final size:26
Alignment explanation
Indices: 17337652--17337702 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17337642 GTTAACTCAG
*
17337652 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17337678 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
17337703 GGATAGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17338551 original size:26 final size:26
Alignment explanation
Indices: 17338515--17338567 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17338505 GTTGACTTAG
*
17338515 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
17338541 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17338567 G
1 G
17338568 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17338718 original size:863 final size:859
Alignment explanation
Indices: 17336092--17339304 Score: 3777
Period size: 863 Copynumber: 3.7 Consensus size: 859
17336082 GGGTTACGGT
*
17336092 GGCCGGGGGGTTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-C
1 GGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTC
* * * *
17336156 TTATCCCTCATCAAAGCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
65 -TATCCATCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * * *
17336221 CTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACATTTTTTTCAAATGGTGACAAAATCTTGTA
129 CTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
17336286 CACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACATCTACCA
194 CACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
*
17336350 AGTTTGGGGCCAAAACTAATTCCGAAAAAAATTTAAAAAATCCCGAACCACAAAATGTTTCAAAA
259 AGTTTGGGACCAAAAC----TCC---------TT------T--CG-A--A-AAAATGTTTCAAAA
* * * * *
17336415 ATCGTAAAAAATA-AAAATGAGTTGTCTTGCCATGAAACTTCATGTGACA-GTTTAAGGGACCAC
299 ATTGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCAC
*
17336478 TGTATGAATTTACAAGCTATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
363 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
* ** * *
17336543 ACCTACCACCCTATCAATCCACGGCTTGCGCATCCTTTCTCCCTGGCCGACATAGTGCCCGCCCG
428 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
* * * * *
17336608 CCCA--------CTCGTTTCATCAATTGGCTTAGGGATACAGAGTTCATTCCCAGTCTAAGATCC
493 CCCACCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
17336665 GACC-AGACTGAGGGTTGTGGCAGCAGTATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCG
558 GACCGA-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGTCCCGACCGATCCCCG
* * * * **
17336729 GCTTGCGCATCCCGCCCCTCTGGCTGGCTGAATGC-CCGCATGCTCATTTCGTGGGTTGACTTAG
622 TCTTGCGCATCCCGCCCCTCTGGCCGG-TTAA-GCGCCGCACGCTTGTTTCGTGGGTTGACTTAG
* * * * *
17336793 GCATACAGAGTTCATTCCCAGTCTAAGCAAACGTATTTCATTCCCAGTCTAAGATTA-GAGCGGA
685 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA-TAGGACCGGA
* * * ** ** * *
17336857 CCGAGGGTT-GCCG-CAT--T----T------T-TCTT--CGTCGAGGTACCATCGTCGGAGCAT
749 CCGAGGGTTAGCAGACATGCTGGGCTCGGGCATGTGTTGGTGTCGATTTTTCTTCGTCGAAGCAT
* * * * *
17336905 CGCCAGAGAACTTGACT-GAAGGCATTGGGGTT-TCGGCGATCGGGGT
814 CGCCGGAGAACCTGAATGGCA-GCATTGGGGTTCT-GGCGATCGGGGG
* * * *
17336951 GGCCAGTGGGTTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCC-TATATTGGCCCCC
1 GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTC
*
17337015 TATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
65 TATCCATCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
17337080 TGCCAGTAGCCATTAAAGTTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
130 TGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
17337145 ACTTCAAGTTTTTAGCTGAATATTTTTGTACATGCCAAAAAAAATACAAGGATCACGTCTACCAA
195 ACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
*
17337210 GTTTGGGACCAAAAATCCTTCGAAAAAATTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATT
260 GTTTGGGACC-AAAA--C-TC-------CTT------TC--GAA----AAAATGTTTCAAAAATT
* * * * * *
17337275 GTGAAAAATAAAAAACGAGTCGTCTTGCCATTAAAACTTCACGTGAAGGCTGAAGGGACGATTGT
302 GTAAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCACTGT
* *
17337340 ATGAATTTACAACCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
366 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * *
17337405 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTGTAGCCGATGTAGT--------GCCC
431 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* *
17337462 ACCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
496 ACCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
17337527 CGAACTGAGGGTTACGGCAGCACGATCGGTAGCACACAGAGGGGGTCCCGGCCGATCCCCGTCTT
561 CGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGTCCCGACCGATCCCCGTCTT
* * * * * *
17337592 GCGTATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTTGTTTCATGGGTTAACTCAGGCATA
626 GCGCATCCCGCCCCTCTGGCCGGTTAAGCG-CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATA
* *
17337657 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAGGATAGGACCGGACCGAGG
690 CAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATAGGACCGGACCGAGG
* *
17337722 GTTATGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT-TTCGTC-AGAGCATC
755 GTTA-G-CAG-ACATGCTGGGCTCGGGCATGTGTTGGTGTCG-ATTTTTCTTCGTCGA-AGCATC
* ** *
17337785 GCCGGAGAACCTGAACGGCAATATTGGGGTTCTAGCGATC-GGGG
815 GCCGGAGAACCTGAATGGCAGCATTGGGGTTCTGGCGATCGGGGG
*
17337829 GGCCGGGGGGTGTGCGTGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCT
1 GGCCGGGGGGTGTGC--GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCT
* * * * *
17337894 CTATCCTTCATCAAATCTCGGGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTA
64 CTATCCATCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
17337959 CTGCCAGTAGTCATTAAAGTGTCTAAAATGGGGACACTTTGTTCAAATGGTCACATAATCTTGTA
129 CTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
17338024 CACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCA
194 CACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * *
17338089 TGTTTGGGACCAAAACTCCTTTCG-AAAAATGTTTCACAATTTGTGAAAAATAGAAAACGAGTCG
259 AGTTTGGGACCAAAACTCCTTTCGAAAAAATGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCG
* *
17338153 TCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCACTGTATTAATTTACAAGCCATAAAAAT
324 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAAT
* * *
17338218 GGCATTGGCATGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
389 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
17338283 TACGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGT
454 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGAT
* * * *
17338348 TGGCTTAGGCATATGGAGTTCATTCCCAGTGTAAGATCGGATCGAACTGAGGGTTGCGGCAGCAG
519 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAG
** *
17338413 GATCGGCAGCACGCAGAGGGGGTCCCGATTGATCCCAGTCTTGCGCATCCCGCCCCTCTGGCCGG
584 GATCGGCAGCACGCAGAGGGGGTCCCGACCGATCCCCGTCTTGCGCATCCCGCCCCTCTGGCCGG
17338478 TTAAGCGCTCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
649 TTAAGCGC-CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
17338543 ATACGGAGTTCATTCCCAATCTAAGATAGGACCGGACCGAGGGTTACAGCAGTACATGCTGGGCT
713 ATACGGAGTTCATTCCCAATCTAAGATAGGACCGGACCGAGGGTT--AGCAG-ACATGCTGGGCT
17338608 CGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGAAGCATCGCCGGAGAACCTGAATGGCAGCAT
775 CGGGCATGTGTTGGTGTCG-ATTTTTCTTCGTCGAAGCATCGCCGGAGAACCTGAATGGCAGCAT
17338673 TGGGGTTCTGGCGATCGGGGG
839 TGGGGTTCTGGCGATCGGGGG
*
17338694 GGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCT
1 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCT
* * *
17338759 ATCCCTCATCAAACCTCAGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
66 ATCCATCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
17338824 GCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
131 GCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
17338889 CTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
196 CTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* *
17338954 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAAT
261 TTTGGGACCAAAACTCCTTTCGAAAAAA-TGT------T--T------CAAAAA---TTG-----
* * *
17339019 CATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAATGCTTAAAGCGACCATTG
303 --TAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCACTG
17339084 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
365 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
17339149 ATATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGC-CTGGCTGGCGTAGTGCCCGCCCGC
430 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT-CTCTGGCCGACGTAGTGCCCGCCCGC
* * * *
17339213 CCGCCCGCCCGCCGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTTTAAGAT
494 CCACCCG--C-CCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
17339278 CAGACCGGACCGAGGGTTGCGGCAGCA
556 CAGACCGAACTGAGGGTTGCGGCAGCA
17339305 CATACTGGGC
Statistics
Matches: 2038, Mismatches: 211, Indels: 176
0.84 0.09 0.07
Matches are distributed among these distances:
851 5 0.00
854 1 0.00
855 140 0.07
856 45 0.02
857 37 0.02
858 188 0.09
859 424 0.21
860 10 0.00
861 2 0.00
862 4 0.00
863 533 0.26
864 57 0.03
865 23 0.01
866 1 0.00
869 2 0.00
870 1 0.00
871 1 0.00
873 1 0.00
876 3 0.00
877 12 0.01
878 7 0.00
879 82 0.04
880 202 0.10
882 3 0.00
889 47 0.02
890 133 0.07
891 1 0.00
892 1 0.00
893 72 0.04
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (859 bp):
GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCT
ATCCATCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
TTTGGGACCAAAACTCCTTTCGAAAAAATGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGATTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGA
TCGGCAGCACGCAGAGGGGGTCCCGACCGATCCCCGTCTTGCGCATCCCGCCCCTCTGGCCGGTT
AAGCGCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAATCTAAGATAGGACCGGACCGAGGGTTAGCAGACATGCTGGGCTCGGGCA
TGTGTTGGTGTCGATTTTTCTTCGTCGAAGCATCGCCGGAGAACCTGAATGGCAGCATTGGGGTT
CTGGCGATCGGGGG
Found at i:17340865 original size:26 final size:26
Alignment explanation
Indices: 17340836--17340888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17340826 GTTGACTTAG
*
17340836 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17340862 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17340888 G
1 G
17340889 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17341821 original size:717 final size:716
Alignment explanation
Indices: 17340112--17343742 Score: 4790
Period size: 717 Copynumber: 5.1 Consensus size: 716
17340102 CCCGCACCTG
* * * **
17340112 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATTTAAGATCGGATCGGACTGAGGGT
1 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGGGT
* ** * *
17340177 TGCCACAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-CACGGGGCACCAT
66 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC-CGGGGCACCAT
* * * * * * * *
17340241 CACTGGAGCATCACCGGAGAACTTGACCGGCGACATTAGTGTTTCGACGATC-GGGGGGCCAGGG
130 CGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGG
* * * *
17340305 GGTGTGTGCACGTGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCA
195 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
17340370 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAC
260 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
17340435 CCATTAAAGTGACTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
325 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * * *
17340500 TTTGAGCTAAATGTTTTTGTGCATGCCAATAAAAATACGAGGATCACGTCTACCAAGTTT-TGGA
390 TTTTAGCT-GATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGA
* *
17340564 CCAAAAATCCTTCGAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAA
454 -CAAAAATCCTTCG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* * *
17340629 AATAAAAAACGAGTTGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
517 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
17340694 TACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACAACC
582 TACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * ** *
17340759 CTATCAATCGACGGCTTGCGCATCCCGTGTCTCTGGCTGGCGTAGTGCCTGCACGCACGTTTCG-
647 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGC-CCCTCCGC
** * *
17340823 TGGGTT
711 CCGCTC
* * ** * * *
17340829 GACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGG
1 G--TT--TCGT-C-G-G----TTGGC--T-TAGGCATACGGAGTTCATTCCCAATCTAAGATCGG
* * * *
17340894 A-CTAGACCGAA-GGTTGCGGCAGCAAATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
52 ATC-GGACC-AAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
17340957 TCACCGGGGCACGATCGTCGGAGCATCATCGGAGAACCTGACCGACGGTATTGGGGTTTCGACAA
115 TCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGA
* *
17341022 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTTGTACTTGGCCCTTATATT
180 TCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
17341087 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
244 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * ** *
17341152 GGTTTGCTGCCGGTAGCCAGTAAAGTGTCCAAAACGGGGACACTTTTTTCAAATGGTCACAAAAT
309 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
17341217 CTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTAGCATGCCAACAAAAATACAAGGATCACGT
374 CTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGT-GCATGCCAACAAAAATACAAGGATCACGT
** * *
17341282 CTACCTTGTTTGGGGACAAAACTCCTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
438 CTACCAAGTTTGGGGACAAAAATCCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* ** * * *
17341347 -AAAAATCATGAAAAATAGAAAGTGATTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAGGGGA
503 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
17341411 CCATTTTATAAATTTACAAGCCATTAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAA
568 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAA
* **
17341476 ACACACCTACCACCCTATCGATCCATC-GCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCT
633 ACCCACCTACCACCCTATCGATCCA-CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCT
*
17341540 GCCCGCCCCTCCACCCGCTC
697 GCCCGCCCCTCCGCCCGCTC
* * * *
17341560 ATTTCGTCGGTTGGCTTAGGCATACGGAGTCCATTCCCAGTCTAAGATCGGATCGGACCAATGGT
1 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGGGT
* * * * *
17341625 TACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGCCAGGGCACCATC
66 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
*
17341690 GCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGTGGG
131 GCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCG-GGG
* ** * * *** *
17341755 GGTGTGTGTGCATGATGTGCAATTGGTGCCATTACTTGGCCTTTATATTGGCCCCCTATCCCTCA
195 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
17341820 TCAATCCTCGAGAAGTCACACCCACTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
260 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
17341885 CCATTAAAGTGTCTGAAATGGGGACACGTTTTTT-GAATGGTCACAAAATCTTGTACACTTCAAG
325 CCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
17341949 TGTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAATGTTTGGG
389 TTTTTAGCTGA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGG
* * **
17342013 GACAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCGAACC--ACAAAAGTTTTGAAAATCGTGA
452 GACAAAAATC-CTTCGAAAAAATTTTAAAAAATCCCGAACCGTA-AAAAGTTTCAAAAATCGTGA
* * *
17342076 AAAATAGAAAACGAGTCTTCTTGGCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAA
515 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** * *
17342141 CGTACAAGCCATAAATATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
580 TTTACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
17342206 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCACCCGC-CC
645 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCC-CTCC
17342270 GCCCGCTC
709 GCCCGCTC
* * *
17342278 GTTTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGT
1 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGGGT
* * * *
17342343 TACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCATCATCGGGGCACCATC
66 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
* *
17342408 GCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
131 GCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGG
* *
17342473 GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCAT
196 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
** * *
17342538 CAAACCTCGAGAACTTTCACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTACCAGTAGC
261 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
17342603 CATTAAAGTGTCTGAAATAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
326 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
17342668 TTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCC
391 TTTAGCTG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAC
* *
17342733 AAAAATCCTTCTGAAAAAATTTTAAAAAAT-TCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
455 AAAAATCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* * * * *
17342797 -ATGAAAATGGGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTT
519 TA-GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
17342861 ACAAGCCATAAAAATGGCATTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCATC
583 ACAAGCCATAAAAATGGCATTGGCA-AGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
17342925 CTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT---T-CCCG---C-CCGCC
647 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCCTCCGCC
17342982 CGCTC
712 CGCTC
* ** * * **
17342987 GTTTCTTCCTTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAAACGGACTGAGGGT
1 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGGGT
* * ** * *
17343052 TACGGCAGCACATGCTGGGCTCGGGCATCTGCTGGTGCCACATTTTTCTTCGTCAGGGCACTATC
66 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
* * * *
17343117 GCCGAAGCATCATCGGAGAACCTGACCTGCGGCATTGGGGTTCCGGCGATC------G--GGGGG
131 GCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGG
* * *
17343174 GTGTGCGCAAATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCAT
196 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
17343239 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACC
261 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
17343304 CGA-CAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGT
326 C-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
17343368 TTTTAGCTGAATTTTTTTGTCCATGCCAACAACAATACAAGGATCACGTCTACCAAGTTTGGGGC
390 TTTTAGCTG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGA
*
17343433 CAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAA
454 CAAAAATCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * *
17343498 ATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTT
518 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
17343563 TCAAGCCATAAAAATGGCTTTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
583 ACAAGCCATAAAAATGGCATTGGCA-AGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
17343627 CTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCATA--G--TGCCCG--CCT--GCC
647 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCCTCCGCC
*
17343684 TGCTC
712 CGCTC
* **
17343689 GTTTCGTCGGTTGGCATAGGCATACGGACCTCATTCCCAATCTAAGATCGGATC
1 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATC
17343743 AAGTCGATGG
Statistics
Matches: 2578, Mismatches: 287, Indels: 113
0.87 0.10 0.04
Matches are distributed among these distances:
701 275 0.11
702 246 0.10
703 3 0.00
709 170 0.07
713 3 0.00
716 21 0.01
717 817 0.32
718 412 0.16
719 3 0.00
720 3 0.00
721 2 0.00
723 1 0.00
724 2 0.00
725 1 0.00
726 1 0.00
727 2 0.00
728 3 0.00
729 2 0.00
730 5 0.00
731 310 0.12
732 53 0.02
733 240 0.09
734 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGGGT
TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
GCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACA
AAAATCCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCCTCCGCCCGCT
C
Found at i:17344810 original size:26 final size:26
Alignment explanation
Indices: 17344781--17344833 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17344771 GTTGACTTAG
17344781 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17344807 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17344833 G
1 G
17344834 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17345184 original size:903 final size:888
Alignment explanation
Indices: 17343006--17349006 Score: 7175
Period size: 903 Copynumber: 6.7 Consensus size: 888
17342996 TTTGGCTTAG
* * * * * *
17343006 GCATACGGAGTTCATTCCCAATCTAAGATCGAAACGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATACTGGG
* * * * ** * *
17343071 C-TCGGGCATCTGCTGGTGCCACATTTTTCTTCGTCAGGGCACTATCGCCGAAGCATCATCGGAG
66 CTTAGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT---CG--G----ATCGGAG
* * *
17343135 AACCTGACCTGCGGCATTGGGGTTCCGGCGAT---------CGGGGGGGTGTGCGCAAATGATGT
122 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
17343191 GCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCA
187 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17343256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCGA-CAAAGTGTCTGAA
252 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAA
*
17343320 ATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
316 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
17343385 TGTCCATGCCAACAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAA
381 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * *
17343450 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
446 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
17343515 TTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTTCAAGCCATAAAAATGG
511 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* **
17343580 CTTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
576 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
17343645 CGCATCCCATCTCTCTGGCCGGCATAGT---GCCCGCCTGCCTGCTCGTTTCGTCGGTTGGCATA
641 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
** * * * * * *
17343707 GGCATACGGACCTCATTCCCAATCTAAGATCGGATCAAGTCGATGGTTGCAGTAGCAAGATCAAC
706 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGCCGAGGGTTGCGGTAGCAAGATCGAC
* * * *
17343772 AGCGCAAAGATGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCACTGGCCGGTTGAGCG
770 AGCACACAGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTA-TGGCCGGCTGAGCG
* * * * *
17343837 CCCACACGCTCATTTCGTGGGTTGACTTAAGC-TTCTGCAGTTCATTCCCAGTCTAA
833 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAA
* * *
17343893 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTGCGGGAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTACGGCAGCACATACTGG
* ** *
17343957 GCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCATCATCGCCGGAGCATCACCGGA
65 GCTTAGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT---C-G-G-AT---CGGA
* *
17344021 GAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGGTGTACGCACATGAT
121 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGAT
*
17344086 GTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GAGAAC
185 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAAC
* * ** *
17344150 TCATACCCCCTGAAAGAGCATTCAAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
249 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
17344215 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAAC-TCGAGTTTTTAGCTGAATTT
314 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTT
* *
17344279 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTG
378 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* *
17344344 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAAGGAGT
443 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAG-AAAACGAGT
* *
17344409 CGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAA
507 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * ** *
17344474 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCGTGA
572 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
17344539 CTTGTGCATCTCGTCTCTCTGGCCGGCGTAGTACGTGCCCGCCAGCCCGCCCGCCCGCCCGCTCG
637 CTTGCGCATCCCGTCTCTCTGGCCGGC---GTA-GT----G-CA----GCCCGCCCGCCCGCTCG
* * *
17344604 TTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCAGATCGAGCCGAGGGTT
689 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGCCGAGGGTT
* * *
17344669 GCGGTAGCAAGATCGACAGAACACAGAGGAGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCC
753 GCGGTAGCAAGATCGACAGCACACAGAGG-GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* *
17344734 TTATGGCCGGCTGAGCGCCCGCACGCTCGGTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCC
817 -TATGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
17344799 CAGTCTAA
881 CAGTCTAA
* * * * * *
17344807 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCTAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATACTGGG
* * *
17344872 CTTAGA-CATGTGCTGGTGTCACATTTTTCTTCACCGGTGCACCATC-G-TCGGAGAACCTGACC
66 CTTAGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGGATCGGAGAACCTGACC
*
17344934 GACGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGAGGGTGTGCGCACATGATGTGCGATGG
131 GGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGG
* *
17344998 GTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
17345063 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
** * * *
17345128 ACTTTTTTCAAATGGTCGTAGAGTCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
17345193 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGTCAAAAATCCTTCCGAAAAAATTTTA
389 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * *
17345258 AAAAATCCCGAACTGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
454 AAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
17345323 AAACTTCACGTCAAGGCTTAACGGACCATTGTATGAATTTTCAAGCCAT-AAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * * * * * *
17345387 TGTAGAAATATGAAGATATGGCTAAACTCGCCCACCACACTATCGATCCACGGCTTGCGTAACTC
584 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
17345452 GTCTCTCTGGCCGACGTAGT-------GCCCGACCGATCATTTCGTCGGTTGGCCTAAGCATACG
649 GTCTCTCTGGCCGGCGTAGTGCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * ** *
17345510 GAGTTCATTCCCAGTCTAAGATCGAACTAGACGAGGGTTGCAGTAGCAGGATCGGTAGCACATAG
714 GAGTTCATTCCCAGTCTAAGATCGGACCAGCCGAGGGTTGCGGTAGCAAGATCGACAGCACACAG
* * * *
17345575 AGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGC
779 A-GGGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCTATGGCCGGCTGAGCGCCCGCACGC
17345640 TCGTTTCGT-GG--G---T-----T-----G---A-T-----TC-AA
842 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17345661 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGG-AGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAC-GGCAGCACATACTGG
* * * * * ** * * *
17345725 G-TTCGGGCATTTTTCTTCGTTGGGGCA----CCTTCACC--GG-AGCATC-GCT-GGAGAACCT
65 GCTTAGAGCA-TGTGC-T-GGTGCCGCATTTTTCTTCACCGGGGCACCATCGGATCGGAGAACCT
* * * *** *
17345780 GACCGACGGCATTGGGGTTCTGACGATTGGGGGTTTCGGGAGGGTGTGCGCACATGATGTGCGAT
127 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
** ** *
17345845 GGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCATCAAAATTCAAGAACTCACACCC
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
17345910 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * ** * *
17345975 ATACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTTTAGTTTTTAGCTGAATATTTTTATGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
17346040 TACCAGA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
387 TGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* *
17346104 TTAAAAAATCCCGAACTGCAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
451 TTAAAAAATCCCGAACCGCAAAAAG-TTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
17346168 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCAT-AAAATGGCATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
17346232 GGCA-CCTAGAAATATGAAGATATGGCTAAACCCGCCTGCCACCCTATCGATCCATGGCTTGCGC
580 GGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * * * *
17346296 ATCCCGTCTCTTTGGCCAACGTAGTGCCCGACCGCCCGCTCGCTCGTTTCGTCGTTTGGCTTAGG
644 ATCCCGTCTCTCTGGCCGGCGTAGTG-CAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * * * *
17346361 TATACGGAGTTCATTCCTAGTATTAGATCGGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAA
708 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-CCGAGGGTTGCGGTAGCAAGATCGACAG
** * * * * * * * *
17346426 CACGTAGAGGGGGATCGGATCGATCCTCGGCATGTGCATCCTGCCGCTCTGGCCGACTGAGCGCC
772 CACACAGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC-CTATGGCCGGCTGAGCGCC
* *** *
17346491 CGCACGCTCATTTTACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
835 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
17346545 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTACGGCAGCACTTACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATACTGGG
* * *
17346610 CTCA-AGCATGTGCTGGTGCTGCATTTTTCATCACCGGGGCACCATCATCCGAGCATCGCCGGAG
66 CTTAGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA-C--CAT-CG-G-AT---CGGAG
*
17346674 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGCGGGAGGGTGTGCGCACATGA
122 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGG-GGGTGTGCGCACATGA
*
17346739 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
184 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
17346804 TCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
249 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
17346869 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGTTGAATTGT
314 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
17346934 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTCTGA
379 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
** * * *
17346999 AAAAATTTTAAAAAAT-TTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA-ATGAAAATGGGTC
444 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATA-GAAAACGAGTC
17347062 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
508 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
17347127 TGGCATTGCCATGCAGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGC
573 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
17347192 TTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCACCTGCTCGCCCGTCCGCTCGTTTTGTCGG
638 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--CA---GCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * *
17347257 TTAGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAG-AGTAAGGGTTGCGGCAAC
698 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGCCG--AGGGTTGCGGTAGC
* ** * * * * * * *
17347321 CAGATCAGA-AGCACTTAGAGAGGGACCTGACCGATACCTGGCTTGTGCATCCTGCCCCATTGGC
761 AAGATC-GACAGCACACAGAG-GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTA-TGGC
* * *
17347385 CGGCTGAGCCCCCGCATGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTA
823 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
17347450 A
888 A
* * * ** * *
17347451 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGATCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATACTGGG
* * *
17347516 C-TCGAGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATTGTCGGGGCATCGTCGAAG
66 CTTAGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC--GG-ATCG--G-AG
* ** * * * ** * *
17347580 AACTTGACCGGTAGCATTAGGGTTACGGCGATTAGGGTGGCCGGGGGGGTGTGCACACATGATGT
122 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
17347645 GCGATGGGTGTTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
187 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17347710 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
252 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17347775 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTT
317 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
17347840 GCGCATGCCCAA-AAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAA
382 GTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * *
17347904 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTC
446 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
17347969 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGG
511 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
17348034 CATTGGCATGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
576 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
17348099 CGCATCCCGTCTCTTTGGTCGGCGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTG
641 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CAG----CCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * * *
17348164 GCTTA-GCATACGGAGTTCATTCGTAGTCTATGATCAGACCAGACCAAGGGTTGCGG--GCAATA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-CCGAGGGTTGCGGTAGC-A-A
* * * * * *
17348226 GGCTTGACAGCACGCAGAGTGGGACCCGATTGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCG
763 -GATCGACAGCACACAGAG-GGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCTATGGCCG
* * * *
17348291 GCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTACGCATATGGAGTTCATTCCCAGTTTAA
825 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
17348355 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATACTGGG
* * *
17348420 C-TCGAGCATGTGCTGGTGCCGCATTTTTCGTCATCGGGGCACCATCGTCGGAGCATCATCGGAG
66 CTTAGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC-G-G----ATCGGAG
* * *
17348484 AACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGACGGGCGGGTGTACGCATATGA
122 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG--GGG-GGGTGTGCGCACATGA
* *
17348549 TCTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAAC
184 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
17348614 TCACACCTCCTTAAAGGGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
249 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
17348679 GAATGGGGACAC-TTTTTCAAATGGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGATTTTT
314 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTT
**
17348743 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
378 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* * * * *
17348808 AAAAAATTTGAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
443 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTC
* * *
17348873 GTCTTGCCATGCAACTTCATGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAA
508 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
17348938 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
573 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
17349003 TTGC
638 TTGC
17349007 TCTCTGGCCG
Statistics
Matches: 4442, Mismatches: 510, Indels: 304
0.85 0.10 0.06
Matches are distributed among these distances:
849 449 0.10
850 52 0.01
851 3 0.00
853 10 0.00
854 60 0.01
855 7 0.00
856 1 0.00
857 62 0.01
858 85 0.02
859 2 0.00
860 1 0.00
861 2 0.00
864 2 0.00
869 2 0.00
874 2 0.00
877 2 0.00
878 1 0.00
879 1 0.00
880 91 0.02
881 67 0.02
882 1 0.00
883 6 0.00
884 64 0.01
885 7 0.00
886 1 0.00
887 133 0.03
888 3 0.00
891 3 0.00
892 1 0.00
894 1 0.00
895 1 0.00
896 4 0.00
897 306 0.07
898 155 0.03
899 39 0.01
900 7 0.00
901 180 0.04
902 429 0.10
903 672 0.15
904 469 0.11
905 11 0.00
906 358 0.08
907 400 0.09
908 1 0.00
911 1 0.00
913 2 0.00
914 281 0.06
915 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATACTGGG
CTTAGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGGATCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
AAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCAGCCGAGGGTTGCGGTAGCAAGATCGACAGCACACAGAG
GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTATGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17346555 original size:26 final size:26
Alignment explanation
Indices: 17346519--17346571 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17346509 GTTGACTTAG
*
17346519 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17346545 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17346571 G
1 G
17346572 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17347454 original size:26 final size:26
Alignment explanation
Indices: 17347425--17347477 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17347415 GTTGACTTTG
*
17347425 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17347451 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17347477 G
1 G
17347478 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17348365 original size:26 final size:26
Alignment explanation
Indices: 17348329--17348381 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17348319 GTTGACTTAC
*
17348329 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
17348355 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
17348381 G
1 G
17348382 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:17348928 original size:907 final size:902
Alignment explanation
Indices: 17345731--17349006 Score: 4581
Period size: 904 Copynumber: 3.6 Consensus size: 902
17345721 CTGGGTTCGG
*** * * * *
17345731 GCATTTTTCTTCGTTGGGGCACCTTCACCGGAGCATCG-CTGGAGAACCTGACCGACGGCATTGG
1 GCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTAG
* * ***
17345795 GGTTCTGACGAT--TGGGGGTTTCGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
65 GGTTCCGACGATCGGGGGGGCCGCGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
** **
17345858 TGGTGCTTATATTGGCCCCCTATCCCTCATCAAAATTCAAGAACTCACACCCCCTTAAAGAGCAT
130 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
* * *
17345923 TTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAA
195 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * * *
17345988 ATGGTCACAAAATCTTGTAGACTTTTAGTTTTTAGCTGAATATTTTTATGCATACCAGAAAAAAT
260 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-AAAAAAT
*
17346053 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGA
324 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CTGA
* * *
17346118 ACTGCAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
388 ACCGCAAAAAG-TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
17346182 TGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCC-ATAAAATGGCATTGGCA-CCTAGAAAT
452 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGC-AGAAAT
* * * * *
17346245 ATGAAGATATGGCTAAACCCGCCTGCCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTTTG
516 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTG
** * * * *
17346310 GCCAACGTAGTGCCCG---ACCGCCCGCTCGCTCGTTTCGTCGTTTGGCTTAGGTATACGGAGTT
581 G-CGGCGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * *
17346372 CATTCCTAGTAT-TAGATCGGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAACACGTAGAGG
645 CATTCCTAGTCTAT-GATCGGACCAGACTAAGGGTTGCGGCAACAGGATAGACAGCACGTAGAGA
* * * * * * *
17346436 GGGATCGGATCGATCCTCGGCATGTGCATCCTGCCGCTCTGGCCGACTGAGCGCCCGCACGCTCA
709 GGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
***
17346501 TTTTACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAG
774 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAG
* * * ** * * * *
17346566 TCTAAGATTGGACCGGATTGAGGGTTACGGCAGCACTTACTGGGCTCAAGCATGTGCTGGTGCT
839 TCTAAGATCGGACCAGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
* * * *
17346630 GCATTTTTCATCACCGGGGCACCATCATCCGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
1 GCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGG
*
17346695 GTTCCGGCGATCGGGGGGGCCGGCGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
66 GTTCCGACGATCGGGGGGGCC-GCGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
** *
17346760 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCAT
130 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
*
17346825 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
195 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
17346890 ATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAAT
260 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAT
* * *
17346955 ACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATTTGAA
324 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTGAA
* * * *
17347020 CCGCAAAAAGTTTCAAAAATCGTGAAAAA-ATGAAAATGGGTCGTCTTGCCATGAAACTTCACGT
389 CCGCAAAAAGTTTCGAAAATCATGAAAAATA-GAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
17347084 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATAT
453 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGAAATAT
* *
17347149 GAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
518 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGC
* * * * * *
17347214 AGGCGTAGTGCCCACCTGCTCGCCCGTCCGCTCGTTTTGTCGGTTAGCTTAGGCATATGGAGTTC
583 -GGCGTAGTGCCCGCCT-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * *
17347279 ATTCCTAGTCTAAGATCGGACCAGAGTAAGGGTTGCGGCAACCA-GATCAGA-AGCACTTAGAGA
646 ATTCCTAGTCTATGATCGGACCAGACTAAGGGTTGCGGCAA-CAGGAT-AGACAGCACGTAGAGA
* * * * * *
17347342 GGGACCTGACCGATACCTGGCTTGTGCATCCTGCCCCAT-TGGCCGGCTGAGCCCCCGCATGCTC
709 GGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCC-TCTGGCCGGCTGAGCGCCCGCACGCTC
* *
17347406 GTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
773 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCA
* * *
17347471 ATCTAAGATCGGACTAGATCGAGGGTTGTGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
838 GTCTAAGATCGGACCAGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
* * ** * * * **
17347536 GTATTTTTCTTCCCCGGGGCACCATTGTCGGGGCATCGTCGAAGAACTTGACCGGTAGCATTAGG
1 GCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGG
* * ** * * *
17347601 GTTACGGCGATTAGGGTGGCCG-GGG-GGGTGTGCACACATGATGTGCGATGGGTGTTGGTACTT
66 GTTCCGACGATCGGGGGGGCCGCGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
17347664 GGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
131 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
*
17347729 TGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
196 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
17347794 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGCGCATGCCCAAAAAAATA
261 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAAAAAAATA
*
17347859 CAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAA
325 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCT-GAA
*
17347924 CCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTG
389 CCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
17347989 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGAAATATG
454 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGAAATATG
*
17348054 AGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTC
519 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGG-C
17348119 GGCGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCA
583 GGCGTAGTGCCCG-CCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * *
17348183 TTCGTAGTCTATGATCAGACCAGACCAAGGGTTGCGGGCAATAGGCTTGACAGCACGCAGAGTGG
647 TTCCTAGTCTATGATCGGACCAGACTAAGGGTTGC-GGCAACAGGATAGACAGCACGTAGAGAGG
* ** * *
17348248 GACCCGATTGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTT
711 GACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
17348313 TCGTGGGTTGACTTACGCATATGGAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAGTC
776 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTC
* * * *
17348378 TAAGATCGGACCAAACCGAGGGTTGTGACAGCACATGCTAGGCTCGAGCATGTGCTGGTGCC
841 TAAGATCGGACCAGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
* * * *
17348440 GCATTTTTCGTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTAGG
1 GCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGG
* * * *
17348505 GTTCCGACGATCGGGGGGGCCGACGGGCGGGTGTACGCATATGATCTGCGATGGGTGCTGGTACT
66 GTTCCGACGATCGGGGGGGCCG-CGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
** * *
17348570 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCTCCTTAAAGGGCAT
130 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
* *
17348635 TTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACAC-TTTTTCAA
195 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
17348699 ATGGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGATTTTTTTTTGTGCATGCCAACAAAAA
260 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAA-AAAAA
** *
17348764 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTGAAAAAATCCTG
323 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CTG
* * * *
17348829 AACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGCAACTTCATG
387 AACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
17348894 TGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
452 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGAAATA
17348959 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
517 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
17349007 TCTCTGGCCG
Statistics
Matches: 2112, Mismatches: 232, Indels: 58
0.88 0.10 0.02
Matches are distributed among these distances:
899 64 0.03
900 6 0.00
901 98 0.05
902 364 0.17
903 319 0.15
904 488 0.23
905 6 0.00
906 369 0.17
907 396 0.19
908 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGG
GTTCCGACGATCGGGGGGGCCGCGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTGAACC
GCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCGGC
GTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
TAGTCTATGATCGGACCAGACTAAGGGTTGCGGCAACAGGATAGACAGCACGTAGAGAGGGACCC
GATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCAGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
Found at i:17349695 original size:695 final size:697
Alignment explanation
Indices: 17348355--17350459 Score: 2619
Period size: 758 Copynumber: 2.9 Consensus size: 697
17348345 CCCAGTTTAA
* * * * *
17348355 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGTGGCAGCAAATGCTGGG
* * * * *
17348420 CTCGAGCATGTGCTGGTGCCGCATTTTTCGTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCGCCGG-GCATCGTCGGAGA
* *
17348485 ACCTGACCGGCGGCATT-AGGGTTCCGACGATCGGGGGGGCCGACGGGCGGGTGTACGCATATGA
129 ACCTGACCGGCGGCATTGA-GGTTCCGACGATCGGGGGGG-C--CGGG-GGGTGTGCGCACATGA
* *
17348549 TCTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAAC
189 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAAC
* * *
17348614 TCACACCTCCTTAAAGGGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
253 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
17348679 GAATGGGGACAC-TTTTTCAAATGGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGATTTTT
318 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTT
17348743 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
382 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * * *
17348808 AAAAAATTTGAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
447 AAAAAATTTTAAAAAATCCGGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
* * *
17348873 GTCTTGCCATGCAACTTCATGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAA
512 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
17348938 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
577 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*
17349003 TTGCTCTCTGGCCG-G-CTG-AG-CGCCCGCACGCTTGTATCGTGGGTTAACTTAG
642 TTGCTCTCTGGCCGAGACTGCAGCCGCCCGCACGCTTGTATCGTCGGTTAACTTAG
* * *
17349055 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCATACCGAGGGTTGCGGCGGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGTGGCAGCAAATGCTGGG
* *
17349120 CTCGGGCATGTGCTGGTGCTACATTTTTCTTTGTCGGGGCACCATCGCCGGTGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGC-GCATTTTTCTTCGTCGGGGCACCATCGCCGG-GCATCGTCGGAGA
* * * *
17349185 ACCTGACCGGAGGCCTTGAGTTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT-C
129 ACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
17349249 GATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCTTCGTCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
17349314 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCACTAAAGTGTTTAAAATC
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
17349379 GGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCAT-AATGTTTTTG
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTG
*
17349443 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** *
17349508 ATTTTAAAAAATCTC-GAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCT
452 ATTTTAAAAAATC-CGGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
17349572 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
17349637 ATTGGCATGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-T--
* * * * * **
17349702 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTTTTTCGTCGGTTGGCTTA
643 ---T---G-CTCTCTGGCCGA-G-ACTG-CAG-CCGCCCGCACGCTTGTATCGTCGGTTAACTTA
17349767 G
697 G
* ** *
17349768 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGTGGCAGC---A---A-A
* * *
17349833 GCAGACAGAGGGAGACCCAACCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGTGCTGGTGCCGT
59 --TG-C---TGG-G-------C--T--C--G---G-GCA-----------T-GTGCTGGTG-CGC
* * ** * *
17349898 ATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGGATTGGGGT
87 ATTTTTCTTCGTCGGGGCACCATCGCCGG-GCATCGTCGGAGAACCTGACCGGCGGCATTGAGGT
* *
17349963 TCCGACGATC-GGGGGGCCGTGGGGGTTCTGCACACATGATGTGCGATGGGTGCTGGTACTTGGC
151 TCCGACGATCGGGGGGGCCG-GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
17350027 CCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGA
214 CCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
17350092 GATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGCCACTTTTTTCAAATGG
278 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
17350157 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAA
343 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
** * *
17350222 GGATCACGTCTAAAAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCGGAAGCG
408 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCGGAAACG
* *
17350287 CAAAAAGTTTTGAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAG
473 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
17350352 GCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
538 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
17350417 ATGTACCCAAACCCACCTACCACCCTATCAATCCACGACTTGC
603 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
17350460 GCATCCTGTC
Statistics
Matches: 1214, Mismatches: 118, Indels: 98
0.85 0.08 0.07
Matches are distributed among these distances:
695 373 0.31
696 60 0.05
697 5 0.00
699 2 0.00
700 145 0.12
701 2 0.00
704 1 0.00
705 11 0.01
707 1 0.00
709 2 0.00
711 1 0.00
713 75 0.06
716 1 0.00
719 1 0.00
720 1 0.00
722 1 0.00
723 1 0.00
726 2 0.00
727 1 0.00
734 1 0.00
736 1 0.00
738 1 0.00
740 1 0.00
743 1 0.00
744 3 0.00
748 1 0.00
749 1 0.00
752 1 0.00
755 10 0.01
756 77 0.06
757 20 0.02
758 410 0.34
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (697 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGTGGCAGCAAATGCTGGG
CTCGGGCATGTGCTGGTGCGCATTTTTCTTCGTCGGGGCACCATCGCCGGGCATCGTCGGAGAAC
CTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAATCCGGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTCTCT
GGCCGAGACTGCAGCCGCCCGCACGCTTGTATCGTCGGTTAACTTAG
Found at i:17350718 original size:26 final size:26
Alignment explanation
Indices: 17350689--17350741 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17350679 GTTGACTTAG
*
17350689 GCATACGTAGTTCATT-CTCAGTCTAA
1 GCATACGAAGTTCATTCCT-AGTCTAA
17350715 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
17350741 G
1 G
17350742 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:17352242 original size:30 final size:30
Alignment explanation
Indices: 17352206--17352267 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
17352196 ACCTACCACG
17352206 CTATCGATCCACGACTTGCGCATCCCGTCT
1 CTATCGATCCACGACTTGCGCATCCCGTCT
*
17352236 CTATCGATCCACGACTTGCGCATCTCGTCT
1 CTATCGATCCACGACTTGCGCATCCCGTCT
17352266 CT
1 CT
17352268 CTGGCCGGCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.16, C:0.39, G:0.16, T:0.29
Consensus pattern (30 bp):
CTATCGATCCACGACTTGCGCATCCCGTCT
Found at i:17352849 original size:898 final size:871
Alignment explanation
Indices: 17349899--17353983 Score: 4002
Period size: 902 Copynumber: 4.6 Consensus size: 871
17349889 TGGTGCCGTA
* * *
17349899 TTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGGATTGGGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAG-ATCGCC-GAGAACCTGACCGGCGGCATTGGGGTT
* * * *
17349964 CCGACGATCGGGGGGCCGTGGGGGTTCTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
64 TCGACGATC-GGGGGCAG-GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
17350029 TTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGA
126 TTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
17350094 TTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGCCACTTTTTTCAAATGGTC
190 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
17350159 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGG
255 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-ACAAAAATACAAGG
* ** * * * **
17350224 ATCACGTCTAAAAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CGGAAGCGC
319 ATCATGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCAT
** * *
17350288 AAAAAGTTTTGAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGG
382 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
17350353 CTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
447 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* * * * * **
17350418 TGTACCCAAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCCTGTCTC--TCTGGCCGG
512 TGTGCCTAAACCCACCTACCACGCTATCGATCCACGACTT-CGCA-CC-GTCTCTATCTCGCTTG
* * * * * **
17350481 CGTA-GTGC-C-C--GC--C-----CGCCTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGGTT
574 CGCACGT-CTCTCTGGCGGCATATGCGCCCG-CCGCCAGCT-GTTT--TCAGTTGCCTTAGGCAT
* * * *
17350534 A-CGGAGTTCATTCCCAGTCTAAGATCCGACCG-AACTGAAGGTTGCGGCAGCAGGATCAGCAGC
634 ATTGGAGTTCATTCCCAATCTAAGATCGGA-CGAAACTGAGGGTTGCGGCAGCAGGAT-AGCAGC
* * * * * * ** *
17350597 ACGTAGAGGGGCACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCT
697 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGTGCCC
* * * * *
17350662 GCATGCTCGTTTCGTGAGTTGACTTAGGCATACGTAGTTCATTCTCAGTCTAAGCATACGAAGTT
762 GC--GCAC--ATCGTAAGTTGACTTAGGCATACGGAGTTCATTC-C---C--AG--T-CTAAG--
* ** *
17350727 CATTCCTAGTCTAAGATCGGATTGGACCAAGGGTTCCGGCAGCACATGCTGGGCTCGGGCATGTG
812 -A-T-C---T-T---A---G--TGGACCGAGGGTTGTGGCAGCACAT-CTGGGCTAGGGCATGTG
** *
17350792 CTGGTGCCACA
861 CTGGTGTGACT
* * *
17350803 TTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACTGGCGGCATTGGGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAG-ATCGCC-GAGAACCTGACCGGCGGCATTGGGGTT
* * * * *
17350868 CCGACGATCGAGGGGCCGGGGGGTGTGCGTACATGATGTGCGATGGGTACTGGAACTTGGCCCTT
64 TCGACGATCG-GGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
17350933 TTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCTTTAAAGAGCATTTGAGATT
128 ATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
17350998 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCAC
192 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
17351063 AAAATCTTGTACACTTCGAGTTTCTT-GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
257 AAAATCTTGTACACTTTGAGTTT-TTAGCTGAATTTTTTTGTGCATGCC-ACAAAAATACAAGGA
* * * **
17351127 TCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCC-AAAGAAATTTTAAAAAATC-CGAATCGCA
320 TCATGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAA-AAATTTTAAAAAATCTCGAACCATA
* *
17351190 AAAAGTTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
383 AAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * *
17351255 CTTAAGAGACCATTGTATGTATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
447 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* *
17351320 TGTGCCTAAACCCACCTACTAC-CATATCGATCCACGGCTT-G---CG---C-A-------T-C-
512 TGTGCCTAAACCCACCTACCACGC-TATCGATCCACGACTTCGCACCGTCTCTATCTCGCTTGCG
** * * *
17351367 C-CGTCTCTCTAAACGACGTA-GTGCCCG-C-CCA-CTCGTTTCGTC-GATTAG-CTTAGGCATA
576 CACGTCTCTCT-GGCGGCATATGCGCCCGCCGCCAGCT-GTTT--TCAG-TT-GCCTTAGGCATA
** * * * * *
17351425 -CAGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TCGAAGGTTGCGACAGCAGGATCAGCAGCA
635 TTGGAGTTCATTCCCAATCTAAGATCGGACGAAACT-GAGGGTTGCGGCAGCAGGAT-AGCAGCA
* *
17351488 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCAC-ACCCCTCTGGTCGGCTGAGTGCCC
698 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC-CTGCCCCTCTGGTCGGCTGAGTGCCC
* * ** ** * *
17351552 GCAAGCTCGTACTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGAA
762 GC--GCACAT-C-GTAAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTTAGTGGA
* * * ** *
17351617 CCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGTTGCCACA
823 CCGAGGGTTGTGGCAGCACAT-CTGGGCTAGGGCATGTGCTGGTGTGACT
* * *
17351667 TTTTTCTTCGTCGGGGCACTATCGTCGGTGTATCGCCGGAGAACCTGACCGGCGGCATTGGTGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAG-ATCGCC-GAGAACCTGACCGGCGGCATTGGGGTT
* * * * *
17351732 CCGACGATCGGGGGCCGAGGGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
64 TCGACGATCGGGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
17351797 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
129 TATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
17351862 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACA
193 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
17351927 AAATCTTGTACACTTTGAGTTTTTACCTGACTTTTTTTGCGCATGCCAGCAAAAATAC-AGGAAT
258 AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-CAAAAATACAAGG-AT
* *
17351991 CATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATCTCGAATCATAAA
321 CATGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAA
*
17352056 AAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
385 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
17352121 AAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
450 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
17352186 GCCTAAACCCACCTACCACGCTATCGATCCACGACTTGCGCATCCCGTCTCTATCGATCCACGAC
515 GCCTAAACCCACCTACCACGCTATCGATCCACGACTT-CGCA--CCGTCTCTATC--T---CG-C
* * * *
17352251 TTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCTTTTTGTCAGTTGG
571 TTGCGCA---CGTCTCTCTGG-CGGCATA-TG--CGCCCG-CCGCCAG--CTGTTT-TCAGTTGC
*
17352316 CTTAGGCCTA-TGGAGTTCATTCCCAATCTAAGATCGGACTGAAACTGAGGGTTGCGGCAGCAGG
625 CTTAGGCATATTGGAGTTCATTCCCAATCTAAGATCGGAC-GAAACTGAGGGTTGCGGCAGCAGG
* * * * *
17352380 ATTGGCTGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGAC
689 A-TAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGC
* *
17352445 TGAGTGCCCGCGCGCCTCGTAAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTTA
753 TGAGTGCCCGCGCACATCGTAAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTTA
17352510 GTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGTGACT
818 GTGGACCGAGGGTTGTGGCAGCACAT-CTGGGCTAGGGCATGTGCTGGTGTGACT
* *
17352565 TTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAG-ATCGCC-GAGAACCTGACCGGCGGCATTGGGGTT
* *
17352630 TCGACGATCGGAAGGGCTGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCT
64 TCGACGATCGG--GGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
17352695 TATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCTTTAAAGAGCATTTGAG-TT
127 TATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
17352758 TTACAAGTTTGGCTGGCCAGTAGCCATTAAAATGTCTGAAATGGGGACAC-TTTTTCAAATGGTC
192 TTACAGGTTT-GCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
17352822 ACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATCTTTTTGTGCATGCCTACAAAAATACAAGG
255 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-ACAAAAATACAAGG
* * * * *
17352887 ATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTA
319 ATCATGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATA
* * *
17352952 AAAAGTTTCAAAAATCGTTAAAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
383 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
17353017 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGGCAGGTAGAAATATGAAGAT
448 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
17353082 GTGCCTAAACCCA-CTA-CA-G----C-AT-----A--T--CA--------ATCTCGCTTGCGCA
513 GTGCCTAAACCCACCTACCACGCTATCGATCCACGACTTCGCACCGTCTCTATCTCGCTTGCGCA
*
17353122 CGTCTCTCTGGCGGCATATGCGCCCGCCGCCAGCTGTTTTCGGTTGCCTTAGGCATATTTGGAGT
578 CGTCTCTCTGGCGGCATATGCGCCCGCCGCCAGCTGTTTTCAGTTGCCTTAGGCATA-TTGGAGT
* * * *
17353187 TCATTCCCAATCT-AGATCAGACGAAAC-GAGGGTGTTG-GGTAGCACGGA-CGCAG-AGGCAGA
642 TCATTCCCAATCTAAGATCGGACGAAACTGA-GG-GTTGCGGCAGCA-GGATAGCAGCACGCAGA
*** * * * ** * ** *
17353247 -CACGACCCGTTTCGAT-CCCGCCTTGCGCATGGCTGACTTCAGTTCTGGTTCGTGGTTTGTGCA
704 GGGGGACCCG-ATCGATCCCCGGCTTGCGCAT-CCTG-C--C-CCTCTGG-TCG-GCTGAGTGCC
* ** ** ** * * *
17353310 AGCATACAAAGTTTCAA-TTCCCATTAGG-A-ACGGAGTTTATT-CCATTCATACAAAATTTCTT
761 CGCGCACATCG--T-AAGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTC-T--AAGA--TCTT
** * * *
17353371 AAG-GGAGTGAAAGGTTGTGGCAG--CAT-TTGG-AAGGGCATGTG-TCGGTGCTG--T
817 -AGTGGACCG-AGGGTTGTGGCAGCACATCTGGGCTAGGGCATGTGCT-GGTG-TGACT
* * * * * * **
17353422 ATTTTTCCTCATCAGGGCACCA---TC--AG-TCG--TACAACCTTAGCCGGCAACATTGGGG-T
1 -TTTTTCTTCGTCGGGGCACCATCGTCGGAGATCGCCGAGAACCTGA-CCGGCGGCATTGGGGTT
* *
17353478 TCTGACGTTCGGGGGGCCAGGGGGGTGTGCACACATTTGATGTGCGATGGGTGCTGG-ACGTCT-
64 TC-GACGATC-GGGGG-CAGGGGGGTGTGCGCACA--TGATGTGCGATGGGTGCTGGTAC-T-TG
*
17353541 G-CCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTT
122 GCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
17353605 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAAT
186 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
17353670 GGTCATAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATAC
251 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-ACAAAAATAC
*
17353735 AAGGATCATG--TACCAAGTTTGGGGCCAAAATCCTTTCGAAAAAATTTTAAAAAAT-TCCGAAC
315 AAGGATCATGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTAAAAAATCT-CGAAC
17353797 CATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
379 CATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
17353862 AGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGA
444 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
* * * *
17353927 AGATGTGACTAAACCCACCTACGACCCTATCGATCCACGGCTTACGCAACCGTCTCT
509 AGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGACTT-CGC-ACCGTCTCT
17353984 CTGACCGACG
Statistics
Matches: 2755, Mismatches: 273, Indels: 334
0.82 0.08 0.10
Matches are distributed among these distances:
848 13 0.00
849 204 0.07
850 53 0.02
851 103 0.04
852 105 0.04
853 41 0.01
854 21 0.01
855 26 0.01
856 9 0.00
857 24 0.01
858 43 0.02
859 12 0.00
860 16 0.01
861 14 0.01
862 14 0.01
863 435 0.16
864 142 0.05
865 3 0.00
867 1 0.00
868 2 0.00
869 1 0.00
870 5 0.00
873 1 0.00
874 1 0.00
876 1 0.00
877 1 0.00
878 1 0.00
880 2 0.00
881 4 0.00
882 1 0.00
883 2 0.00
884 5 0.00
885 3 0.00
886 1 0.00
887 1 0.00
888 3 0.00
889 6 0.00
890 166 0.06
891 5 0.00
892 2 0.00
893 15 0.01
894 4 0.00
895 3 0.00
896 3 0.00
897 19 0.01
898 434 0.16
899 76 0.03
900 63 0.02
901 57 0.02
902 497 0.18
903 14 0.01
904 77 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
TTTTTCTTCGTCGGGGCACCATCGTCGGAGATCGCCGAGAACCTGACCGGCGGCATTGGGGTTTC
GACGATCGGGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACAAAAATACAAGGATCATGT
CTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACGCTATCGATCCACGACTTCGCACCGTCTCTATCTCGCTTGCGCACGTCTCTC
TGGCGGCATATGCGCCCGCCGCCAGCTGTTTTCAGTTGCCTTAGGCATATTGGAGTTCATTCCCA
ATCTAAGATCGGACGAAACTGAGGGTTGCGGCAGCAGGATAGCAGCACGCAGAGGGGGACCCGAT
CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGTGCCCGCGCACATCGTAAGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTTAGTGGACCGAGGGTTGTGGCAGCACATCT
GGGCTAGGGCATGTGCTGGTGTGACT
Found at i:17354498 original size:205 final size:206
Alignment explanation
Indices: 17354145--17354532 Score: 589
Period size: 205 Copynumber: 1.9 Consensus size: 206
17354135 GCGTATCCTG
* *
17354145 CCCCTCTGGCCGGCTTAGCACCCGCACGCTCATTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
1 CCCCTCTGGCCGGCTGAGCACCCGCACGCTCAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* * ** *
17354210 TTTCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTCAGATCAGATCGGACCGAGGTTTGCGACA
66 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGTTGCGACA
* *
17354275 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCTGGCT
131 GCACAGGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACAGGGGCACCATCGCTGGCT
17354340 TTCGCATCCCA
196 TTCGCATCCCA
* ** *
17354351 CCCCTCTGGCTGGCTGAGTGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 CCCCTCTGGCCGGCTGAGCACCCGCACGCTCAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* * **
17354415 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGATTGGACCGAGGGTTGCGGTA
66 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGTTGCGACA
* **
17354480 GCACAGGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACAGGGGCA
131 GCACAGGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACAGGGGCA
17354533 TGATCACCGG
Statistics
Matches: 162, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
205 135 0.83
206 27 0.17
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.27
Consensus pattern (206 bp):
CCCCTCTGGCCGGCTGAGCACCCGCACGCTCAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGTTGCGACA
GCACAGGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACAGGGGCACCATCGCTGGCT
TTCGCATCCCA
Found at i:17355328 original size:26 final size:26
Alignment explanation
Indices: 17355299--17355351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17355289 GTTAACTTAG
*
17355299 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
17355325 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17355351 G
1 G
17355352 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17356626 original size:878 final size:879
Alignment explanation
Indices: 17354426--17356950 Score: 3446
Period size: 878 Copynumber: 2.9 Consensus size: 879
17354416 TCCCAGTCTA
* * * * *
17354426 AGCATACGGAGTTCATTCCCAGTCAAAGATCGGATTGGACCGAGGGTTGCGGTAGCACAGGCTGG
1 AGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** *
17354491 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACAGGGGCATGATCACCGGAGCATCATTGGAG
66 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTTGGAG
* * * *
17354556 AACCTGACCGGCGGCATTAGGGTTCCGACGATCAGGGGGGTCGGGGGGGTGTGCCCACATGATGT
131 AACCTAACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCACACATGATGT
* * *
17354621 GTGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCTTATCCCTCATCAAACCTCAAGAACTTA
194 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCA
*
17354686 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAA
259 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17354751 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTT
323 TGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17354816 GTGCATGCCAA-AAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACACCTTTCGAAAA
** * ** * *
17354880 AATTTTAAAAAATCAC-AAACCGTAAAAAGTTTTGAAA-ATTATGAAAAATAGAAAACGAGTCGT
452 AATTTTAAAAAATC-CTAATTCGTAAAAAG-TTTCAAATATCGTAAAAAATAGAAAATGAGTCGT
* *
17354943 CTTGCCATGAAACCTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
17355008 GCATTGGCA-TGCAGAAATATGAAGATGTG-CGAAATCCCACCTACCACCCTATCGATCCGCGGC
580 GCATTGGCACT-CAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACGGC
* * *
17355071 TTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-TC--CGCCCGCCCGCTCGTTTCGTCGGT
643 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCGCCCG-CTGCTCGTTTCGTCGGT
* * * ** ** *
17355133 TGGCTTAGGCATACGGAGTTTATT-CTAGTCTAAGATTGGACCGGACTGAGGGTTACGACAGCAA
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGATTACGACAGCAA
* * * * * * * *
17355197 GATGGGCAGCACGTAGAGGGGGACCCGACGAATCCCTGGCTTGCGCATCCTGCCCCTGTAGCCGG
772 GATCGGCAACACGCAGAGGGGGACCCAACGAATCCCCGGCTTACGCATCCTACCCCTCTAGCCGG
* *
17355262 CTGAGTACCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAG
837 CTGAGGACCCG-ACGCTCATTTCGTGGG-----TT----ATA-GAA--TCATT--CAG
* *
17355320 TCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATG
1 ----AGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATG
** * * *
17355385 CTGGGCTCGGGCAT-TGCTGGTGTCACATTTTACTTCGTCGGGGCACTATCACCGGAGCATCGTT
62 CTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTT
*
17355449 GGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCACACATGA
127 GGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCACACATGA
* * *
17355514 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAAC
191 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAAC
* *
17355579 ACACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
256 TCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
17355644 AAATGGGGACACCTTTTTCAAATGATCACAAAAACTTGTACACTTCGAGTTTTTAGCTGTATTTT
320 AAATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
17355709 TTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAATACACCTTTCGA
384 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACACCTTTCGA
17355774 AAAAATTTTAAAAAATCCTAATTCGTAAAAAGTTTCAAATATCGTAAAAAATAGAAAATGAGTCG
449 AAAAATTTTAAAAAATCCTAATTCGTAAAAAGTTTCAAATATCGTAAAAAATAGAAAATGAGTCG
*
17355839 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
17355904 GGCATTGGTACTCAGAAATATGAAGATGAGCCTATACCCAGCTACCACCCTATCGATCCACGGCT
579 GGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
17355969 TGCGCATCCCGCCTCTCTGGCCGACATAGAGCCCGCCCGATCGCCCGCTTGCTCGTTTTGTCGGT
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-TCGCCCGC-TGCTCGTTTCGTCGGT
** * *
17356034 TGGCTTAGGCATACCTAGTTCATTCCCAGTCTAAGATCGGATCAAACCAAGGATT-CTGGCAG-A
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGATTAC-GACAGCA
*
17356097 AGGATCGGCAACAGGCAGAGGGGGACCCAACTG-ATCCCCGGCTTACGCAT-CTCACCCCTCTAG
771 A-GATCGGCAACACGCAGAGGGGGACCCAAC-GAATCCCCGGCTTACGCATCCT-ACCCCTCTAG
*
17356160 CCGGCTGAGCGACCAC-ACGCTTATTTCGTGGG-T-T-G-A-C-TT-AG
833 CCGGCTGAG-GACC-CGACGCTCATTTCGTGGGTTATAGAATCATTCAG
* * * * **
17356201 -GCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTGTGACAGCACATGCCAG
1 AGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** **
17356265 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
66 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTTGGAG
** * *
17356330 AACCTAACCGGCGTTATTGGGGTTCCGACGATCGGGAAGGCCGGGAGGGTGTGCGCACATGATGT
131 AACCTAACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGG-GGGTGTGCACACATGATGT
17356395 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCA
194 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCA
*
17356460 CACACCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17356525 TGGGGACATGTTTTTCAAATGGTCACATAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACAT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
17356590 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACACCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACACCTTTCGAAAA
17356655 AATTTTAAAAAATCCTAATTCGTAAAAAGTTTCAAATATCGTAAAAAATAGAAAATGAGTCGTCT
452 AATTTTAAAAAATCCTAATTCGTAAAAAGTTTCAAATATCGTAAAAAATAGAAAATGAGTCGTCT
17356720 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17356785 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
582 ATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
17356850 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTTCG-CC-CT-CTAGTTTCGTTGATTGGC
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-TCGCCCGCTGCTCGTTTCGTCGGTTGGC
*
17356912 TTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCGGACC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
17356951 GGACCGAGGG
Statistics
Matches: 1458, Mismatches: 146, Indels: 70
0.87 0.09 0.04
Matches are distributed among these distances:
874 49 0.03
875 1 0.00
876 70 0.05
877 83 0.06
878 483 0.33
879 1 0.00
881 2 0.00
884 2 0.00
885 1 0.00
888 1 0.00
889 1 0.00
891 1 0.00
895 2 0.00
896 218 0.15
897 322 0.22
898 73 0.05
900 1 0.00
901 46 0.03
902 96 0.07
903 4 0.00
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (879 bp):
AGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTTGGAG
AACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGT
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACACCTTTCGAAAAAATT
TTAAAAAATCCTAATTCGTAAAAAGTTTCAAATATCGTAAAAAATAGAAAATGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCGCCCGCTGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGATTACGACAGCAAGATCGGCAA
CACGCAGAGGGGGACCCAACGAATCCCCGGCTTACGCATCCTACCCCTCTAGCCGGCTGAGGACC
CGACGCTCATTTCGTGGGTTATAGAATCATTCAG
Done.