Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 97 of 117
Found at i:17357570 original size:714 final size:719
Alignment explanation
Indices: 17356196--17357666 Score: 2344
Period size: 714 Copynumber: 2.1 Consensus size: 719
17356186 CGTGGGTTGA
* * * *
17356196 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTGTGACAGCACATG
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG
*
17356261 CCAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCC
66 CCAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGACACCATCGTCGGAGCATCGCC
* * * **
17356326 GGAGAACCTAACCGGCGTTATTGGGGTTCCGACGATCGGGAAGGCCGGGAGGGTGTGCGCACATG
131 GGACAACCGAACCGACGGCATTGGGGTTCCGACGATCGGGAAGGCCGGGAGGGTGTGCGCACATG
* * * *
17356391 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAA
196 ATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
* *
17356456 CTCACACACCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT
261 CACACACACCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCT
** * * *
17356521 GAAATGGGGACATGTTTTTCAAATGGTCACATAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
326 GAAATGGGGACACCTTTTTCAAATGATCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTT
17356586 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACACCTTCCG
391 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACACCTTCCG
17356651 AAAAAATTTTAAAAAATCCTAATTCGTAAAAAGTTTCAAATATCGTAAAAAATAGAAAATGAGTC
456 AAAAAATTTTAAAAAATCCTAATTCGTAAAAAGTTTCAAATATCGTAAAAAATAGAAAATGAGTC
17356716 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
521 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
17356781 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
586 TGGCATTGGCACACAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * *
17356846 TTGTGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTTCG-CC-C-T-CTAGTTTCGTTGA
651 TTGCGCATCCCGCCTCTCTGGCCGACATAGAGCCCGCCCGATCGCCCGCTTGCTAGTTTCGTCGA
17356907 TTGG
716 TTGG
* * *
17356911 CTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG
** * * * * *
17356976 CTGGGCTCGGGTATGTGCTGGTGCTGTATTTTTCTTCGTCGGGACACTATCGTCGGAGCATCGTC
66 CCAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGACACCATCGTCGGAGCATCGCC
* * * * *
17357041 GTACAACCGGACCGACGGCATTGGGGTTCCGGCGATC-GGAGGGGCCGGG-GGGTGTGCGCACTT
131 GGACAACCGAACCGACGGCATTGGGGTTCCGACGATCGGGA-AGGCCGGGAGGGTGTGCGCACAT
*
17357104 GATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCAAGA
195 GATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
*
17357169 ACACACAC-CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT
260 ACACACACAC-CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGT
* *
17357233 TTGAAATGGGGACACCTTTTTCAAATGATCACAAAAACTTGTACACTTCGAGTTTTTAGCTGTAT
324 CTGAAATGGGGACACCTTTTTCAAATGATCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAAT
17357298 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACACCTTC
389 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACACCTTC
17357363 CGAAAAAATTTTAAAAAATCCTAATTCGTAAAAAGTTTCAAATATCGTAAAAAATAGAAAATGAG
454 CGAAAAAATTTTAAAAAATCCTAATTCGTAAAAAGTTTCAAATATCGTAAAAAATAGAAAATGAG
*
17357428 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAA
519 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
17357493 AATGGCATTGGTACTCAGAAATATGAAGATGAGCCTATACCCAGCTACCACCCTATCGATCCACG
584 AATGGCATTGGCACACAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
17357558 GCTTGCGCATCCCGCCTCTCTGGCCGACATAGAGCCCGCCCGATCGCCCGCTTGCTCGTTTTGTC
649 GCTTGCGCATCCCGCCTCTCTGGCCGACATAGAGCCCGCCCGATCGCCCGCTTGCTAGTTTCGTC
*
17357623 GGTTGG
714 GATTGG
**
17357629 CTTAGGCATACCTAGTTCATTCCCAGTCTAAGATCGGA
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
17357667 TCAAACCAAG
Statistics
Matches: 690, Mismatches: 60, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
713 1 0.00
714 486 0.70
715 153 0.22
716 1 0.00
717 1 0.00
718 48 0.07
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (719 bp):
CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG
CCAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGACACCATCGTCGGAGCATCGCC
GGACAACCGAACCGACGGCATTGGGGTTCCGACGATCGGGAAGGCCGGGAGGGTGTGCGCACATG
ATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
CACACACACCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACCTTTTTCAAATGATCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACACCTTCCG
AAAAAATTTTAAAAAATCCTAATTCGTAAAAAGTTTCAAATATCGTAAAAAATAGAAAATGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACACAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGCCTCTCTGGCCGACATAGAGCCCGCCCGATCGCCCGCTTGCTAGTTTCGTCGA
TTGG
Found at i:17359644 original size:15 final size:15
Alignment explanation
Indices: 17359624--17359654 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
17359614 GAGTGCAATC
17359624 CCGCCCACCCGCCCG
1 CCGCCCACCCGCCCG
*
17359639 CCGCCCGCCCGCCCG
1 CCGCCCACCCGCCCG
17359654 C
1 C
17359655 TCGTTTCGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.03, C:0.74, G:0.23, T:0.00
Consensus pattern (15 bp):
CCGCCCACCCGCCCG
Found at i:17360570 original size:26 final size:26
Alignment explanation
Indices: 17360534--17360586 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17360524 GTTGACTTAG
*
17360534 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17360560 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17360586 G
1 G
17360587 AACAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17361455 original size:26 final size:26
Alignment explanation
Indices: 17361418--17361470 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17361408 GTTGACGTAG
*
17361418 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17361444 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17361470 G
1 G
17361471 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17363189 original size:26 final size:26
Alignment explanation
Indices: 17363159--17363211 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17363149 GTTGACTTAG
17363159 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
*
17363185 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17363211 G
1 G
17363212 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17365878 original size:26 final size:26
Alignment explanation
Indices: 17365842--17365894 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17365832 GTTAACTTAG
*
17365842 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
*
17365868 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACAGAGTTCATTCCCAGACTAA
17365894 G
1 G
17365895 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:17366984 original size:893 final size:894
Alignment explanation
Indices: 17363132--17375416 Score: 15187
Period size: 893 Copynumber: 13.8 Consensus size: 894
17363122 TCCTCGGGAT
* * * *
17363132 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * * * *
17363197 CATTCTCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTG
66 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTG
* *
17363262 CTGGTGCCACATTTTTCCTCGTCGGGGCACCATCG-C----CA------GAGAACCTGACCGACG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACG
* * ** *
17363316 GCATTGGGGTTCCGGCGATCGGGGGCACTGGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
196 GCATTGGGGTTCCGACGATTGGGGGGGC-CG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
17363381 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAATCTCAAGAACTCACACCTCCTTAAA
259 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
17363446 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
324 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
17363511 TTTCAAATTGTCCCAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
389 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * *
17363576 AAAAATATAAGGATCACGTCTAACAAGTTTGGGGCTAAAACTCCCTCCAAAAAAATTTTAAAAAA
454 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
17363641 TCCCGAATCACAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
519 TCCC-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
17363706 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCCATAAAAATGGCATTGGCATGCA
583 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCACGTA
* * *
17363771 GAAATATGAAGATATGCCTAAACCCACCTACCACTCTATCGATCCACTGCTTGCGCATCCCGTCT
647 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* ** ** * * * * * *
17363836 CTCTGGCCGGTGTAGTTTCCTTCCTCCCGCCCGCTCGTTTCATCGGTCGGGTTAGGCATAAGGAG
712 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * **
17363901 TTTATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTCCGACAGTAGGATTGACAGCACGTCGAG
777 TTCATTCCCAGTCTAAGATCGGACCG----GAGAGTTGCGGCAGCAGGATCGACAGCACGAAGAG
* * *
17363966 GGGGACCC-GACCGATCCCCGTCTTGTGCAT------CC-C---AC--C----C-CCC
838 GGGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* ** *
17364006 GCACGCTCGTTTCGTGGGTTGACTTAGCCATAAAGAGTTCATTCCTAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * * * * * * *
17364071 CATTCCCAGTCTAAGATCGGATCAGACCGATGCTTGC-GACAGGACACGTTGGGCTCAGGCATGT
66 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGT
* * *
17364135 GCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATGCG-CGGAGAACCTGATCGA
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT-CGTCGGAGAACCTGACCGA
* *
17364199 CGGCATTGGGGTTCCGACGATTGGGGAGGCCGGGGGGCTGTGCGAACATGATGTGCGATGGGTGC
194 CGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGC
* *
17364264 TGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGACAACTCACACCCCCTTAA
258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
17364329 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGACACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
17364394 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTTGTGCATGCCA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAA-TTTTTTTGTGCATGCCA
** * * *
17364459 GTAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAATTCCTTTCGAAAAAATTTTAAAA
452 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * **
17364524 AATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
517 AATC-CCAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
17364589 CTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
581 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * *
17364654 AGAAATATGAAGATGTCCCTAAACCCACCT-CACACCCTATCGATCCACGACTTGCGCATCTCGT
646 AGAAATATGAAGATGTGCCTAAACCCACCTAC-CACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
17364718 CTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGCCCGCCTGTCCGGTCGTTTCGTCCGTTGGCTTAC
710 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-C--T----T-GTTTCGTCGGTTGGCTTAG
* ** * * * *
17364783 GCATACGGAGTTGATTCTTAGTCTAAGATTGGACCAGACCGAAGGTTGCGGCAGCAGGATTGGCA
767 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA--G-A-GTTGCGGCAGCAGGATCGACA
* * * *
17364848 GCACGTAGAGGGGGACCC-GACTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCG
828 GCACGAAGAGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
17364912 CCC
892 CCC
* * * * * *
17364915 ACACGCTCGTTTCGTGGCTTGACTTAGGCAAACGTAGCTCATTCCCAGTCTAAGAATATGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * * * * *
17364980 CATTCCCAAACTAAGATTGGACCGGATCGAGGGTTGCGGCAGCACATACTGGGATCGAGCATGTG
66 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
17365045 CCGGTGCTGCATTTTTCTTCATCGAGGCACCATCACCGGAGCATCGTCGGAGAACCTGACC-AGC
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-C
* * *
17365109 GACATTGGGGTTCCGACGATT-GGGGGTCCGGGGGGGGTGTGCACACATGATGTGCGATGGGTGC
195 GGCATTGGGGTTCCGACGATTGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
17365173 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAA
258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
17365238 AAAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
17365303 TTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATACCAA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAA
* *
17365368 AAAAAATACATGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
453 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
17365433 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAAC
518 ATCCC-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
17365498 TTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
582 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
* * * *
17365563 GAAATATGAAGATGTGCCTAAACCCACCTGCCGCCTTATCGATCAACGGCTTGCGCATCCCGTCT
647 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
17365628 CTCTGGCCGGCGTCGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACGGAG
712 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
17365693 TTCATTCCTAGTCTAAGAAT-GGGCCGTACTGAGGGTTGCGACAGTAGGATCTATAGCACGTAA-
777 TTCATTCCCAGTCTAAG-ATCGGACCG----GAGAGTTGCGGCAGCAGGATCGACAGCACG-AAG
* * * * *
17365756 AGGGGGACCCAGCCAATCCCCGGCTTGCGCATCCTGCCTCTAC-GGCCAGCTGAGAGCCC
836 AGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCGCCC
* * *
17365815 GCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
*
17365880 CATTCCCAGA-CTAAGATCGGACCGGACCG-GGGATTGC-GACAGCACATGCTGGACTCGGGCAT
66 CATTCCCA-ATCTAAGATCGGACCGGACCGAGGG-TTGCAG-CAGCACATGCTGGGCTCGGGCAT
* * *
17365942 GTGCTGGTGCCGTATTTTTCTTCGTCGGGCCACCATCGCCGAAGCATCGTCGGAGAACCTGACCG
128 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * * *
17366007 GCGGCATTGGGGTTCCGGCGATCGGGGGTGCCGGGGGGTTTGCGCACATGATGTGCGATGGGTGC
193 ACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
17366072 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCTCTTAA
258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
17366137 AGAGCATTTGAGATTTTACAAGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAATGGAGACACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * **
17366202 TTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTCTTAACTGGTTTTTTTTGTGCATGCCAA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
17366267 CAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCCTCCGAAAAAATTTTAAAAA
453 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
*
17366332 ATCCCAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG-AACT
518 ATCCCAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
17366396 TCATGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
583 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* *
17366461 AAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGTATCCCGTCTC
648 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*** * * *
17366526 TCTGGCCAAAGTAGTGCCCGCCCGCCCGCCCGCTTGTGTCGTCAGTTGGCTTTGGCATACGGAGT
713 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGT
** * *
17366591 TCATTCCCAGTCTAAGATCGGATTGGAGAGTTGCGGCAGCAGGATCGACAGCATGAAAAGGGGGA
778 TCATTCCCAGTCTAAGATCGGACCGGAGAGTTGCGGCAGCAGGATCGACAGCACGAAGAGGGGGA
* * * *
17366656 CCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGCTC
843 CCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
** * *
17366708 GCACGCTCGTTTCGTGATTTAACTTAGGAATACGGAGTTCATTCCCAGTCTAATG-ATATGGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GCATATGGAGT
* ** * *
17366772 TCATTCCCAATCTAAGATCGGACCAGATTGAGGGTTGCAGCAACACATGCTAGGCTCGGGCATGT
65 TCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGT
* * * * *
17366837 GCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAGCCGGACCGAT
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGAC
* * * * *
17366902 GGCATTAGGGTTTCGATGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTG
195 GGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
17366967 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTGAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
17367032 AGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
17367097 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATGTTTTTGTGCATGCCAAAA
390 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAA
* ** *
17367162 AAAATATAAGGATCACGTCTACCTTGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAAT
455 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * *
17367227 CCCAAACGGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTT
520 CCC-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * *
17367292 CACATGAAGGCTTAAGCGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGCAGA
584 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
*
17367357 AATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCT
649 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
*
17367422 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCAT
714 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT-------T-GTTTCGTCGGTTGGCTTAGGCAT
* * * **
17367487 ATGGAGTTCATTCCTAGTCTAAGATCGGGCCCCACC-GAGGGTTGCAACAGCAGGATCGACAGCA
771 ACGGAGTTCATTCCCAGTCTAAGATC-GG----ACCGGAGAGTTGCGGCAGCAGGATCGACAGCA
* * * * * * * *
17367551 CGCAGAGGGGGACCC-GACCAATCCTCGGCTTGCACATCCTGCCTCTCTGGCCAGCTGAGAGCCC
831 CGAAGAGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
17367615 GCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG--
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * *
17367669 --------ATC--GGATCGGACC-G---G-GGATTAC-GACAGCACATGCTGGACTCGGGCATGT
66 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGT
* * * *
17367718 GCTGGTGCCGTATTTTTCTTCGTCGGGCCACCATCACCGGAGCATCGTCGGAGAACCTGGCCGAC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGAC
* *** *
17367783 GGCATTGGGGTTCCGGCGA-TGTGGGGTATCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCT
195 GGCATTGGGGTTCCGACGATTG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
17367847 GGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACACCCACTTAAA
259 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
17367912 GAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACAC-TT
324 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
17367976 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAA
389 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAA
* *
17368041 AAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
454 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
**
17368106 TCCCAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG-AACTT
519 TCCCAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
17368170 CATGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
584 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
* *
17368235 AATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGTATCCCGTCTCT
649 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
*** * * *
17368300 CTGGCCAAAGTAGTGCCCGCCCGCCCGCCCGCTTGTGTCGTCAGTTGGCTTTGGCATACGGAGTT
714 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** *
17368365 CATTCCCAGTCTAAGATCGGATCGGAGAGTTGCGGCAGTAGGATCGACAGCATAAAAAGGGGGAC
779 CATTCCCAGTCTAAGATCGGACCGGAGAGTTGCGGCAGCAGGATCGACAGCACGAAGAGGGGGAC
* *
17368430 CCAGCCGATCCCCGGCTTGCACATCCCGCCCCTCTAGCCGGCTGAGCGCCC
844 CCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
17368481 GCACGCTCGTTTC----G-TGA-TT-----TA---A---C-TT---AG-----GCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * *
17368520 CATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAACACATGCTAGGCTCGGGCATGTG
66 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
17368585 CTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAGCCTGACCGACG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACG
* * * * * * *
17368650 GCATTAGGGTTTCGATGATTGGGGGGGTCGGAGGGTGTGCGCACATGATGTACGGTGGGTGCTGG
196 GCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
17368715 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGA
261 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
17368780 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGCACACTTTTT
326 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
17368845 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAAA
391 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * *
17368910 AAATATAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAAAT
456 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAAT
* *
17368975 CCCGAACCGCAAAAAGTTTCAAAAATCGTG-AAAATAGAAAATGAGTCATCTTGCCATGAAACTT
520 CCC-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
17369039 CACGTGAAGGCTGAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
584 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
*
17369104 AATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCT
649 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* ** * * *
17369169 CTGGCTGGCGTAGTGCTTGCCCCGCCCGCCCGCTCGTTTTGTCCGGTTGGCTTAGGCCTACGGAG
714 CTGGCCGGCGTAGTGCCCG-CCCGCCCGCCCGCTTGTTTCGT-CGGTTGGCTTAGGCATACGGAG
* * * * **
17369234 TTCATTCCCTGTCTAAGATCGGGCTGCACC-GAGGGTTG-TGCACCACCGGATCGACAGCACGCC
777 TTCATTCCCAGTCTAAGATC--G--G-ACCGGAGAGTTGCGGCAGCA--GGATCGACAGCACGAA
* * * * * **
17369297 GAGGGGGACCCGGTCAATCCCCGGCTTGCGCCATCCCGCCTCCTCTGGCCAGCTGAGAGCTT
835 GAGGGGGACCCAGCCGATCCCCGGCTTGCG-CATCCCGCC-CCTCTGGCCGGCTGAGCGCCC
* * * *
17369359 GCACGCTC-ATTCG-GTGGTTAACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCTATAAGGAG
1 GCACGCTCGTTTCGTG-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-ATATGGAG
* * * ** * *
17369422 TTAATTCCCAGTCTAAGATCGGACCGGACCG-GCGATTGCAATAGCACATGCTAGACTCGGGCAT
64 TTCATTCCCAATCTAAGATCGGACCGGACCGAG-GGTTGCAGCAGCACATGCTGGGCTCGGGCAT
* * * ** *
17369486 GTGCTGGTGCTGCATTTTTCTTCGTTGGGCCACCATCGTTGGAGCATCGTCGAAGAACCTGACCG
128 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * * * *
17369551 ACGGCATTGGGGTTCCAACGATAGGGGGTGCCGGGGGGTGTGCGCACACGATCTACGATGGGTGC
193 ACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
17369616 TGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAA
258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
17369681 CGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGTCACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
17369746 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAA
* *
17369811 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAA
453 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
17369876 ATCCCAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
518 ATCCCAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
17369941 TCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
583 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
17370006 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
648 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * *
17370071 TCTGGCCGACGTAGTGCCTGCCCGCCCGTCCGCCCGCTTGTGTCATCAGTTGGCTTAGGCATATG
713 TCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
17370136 GAGTTCATTCCCAGTCTAGGATCGGATCGGAGAGTTGCGGAAGCAAGATCGACAGCATGAAAAGG
774 GAGTTCATTCCCAGTCTAAGATCGGACCGGAGAGTTGCGGCAGCAGGATCGACAGCACGAAGAGG
* ** *
17370201 GGGACCCAGTCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCGGAGCGCCC
839 GGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *** * * * * *
17370257 ACACGCTCGTTTCGTTATTTAACTTAGGCATACAGAGTTCATTCCCAATTTAATG-ATACGGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GCATATGGAGT
* * * * *
17370321 TCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAACACATGCTAGGCTCGGGCATGT
65 TCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGT
* * * *
17370386 GCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGCCGGAGAGCCTGACCGAC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGAC
** * * * ** *
17370451 GGCATTAAGGTTTCGATGATTGGGGGGGCCGGGGGGTGTGCGCGCATGATGTATGATGGGAGCTG
195 GGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
17370516 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA-CCCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
17370580 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
17370645 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAGCTGAATTTTTTTATGCATGCCAAAA
390 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAA
* *
17370710 AAAATAAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
455 AAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
17370775 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAGTCGTCTTGCCATGAAACT
519 TCCC-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * **
17370840 TCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACATGAAATAAAAATGGCATTGGCACGTAG
583 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * * * *
17370905 AAATATGAAGATGTACCTTAACCCACGTACCACTCTATCGATCCACGGCTTGTGCATCCCGTCTC
648 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
17370970 TCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTGTCATCGGTTGGCTTAGGCATACGGAGT
713 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
17371035 TCATTCCCAGTCTAAGATCGGATCGGAGAGTTGCAGCAGTAGGATCGACAACACGCA-AGGGGGA
778 TCATTCCCAGTCTAAGATCGGACCGGAGAGTTGCGGCAGCAGGATCGACAGCACGAAGAGGGGGA
* *
17371099 CCCAGCCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCG
843 CCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* **
17371151 GCACGCTCGTTTCATGATTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATG-ATATGGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GCATATGGAGT
* * * *
17371215 TCATTCTCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCACATGCTGGACTCGGGCATGT
65 TCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGT
* * * * *
17371280 GCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGTCAGAGAGCCTGA-CGAC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGAC
* * * *
17371344 GGCATTAGGGTTTCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTG
195 GGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * * *
17371409 GTACTTGGCTCTTATATTGGTCCCCTATCTCTTATCAAACTTCGAGAACACACACCCCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
17371474 AGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
17371539 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTGTTTTGTGCATGCCAAAA
390 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAA
* *
17371604 AAAATACAAGGATCATGTCTACCAAGTTTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
455 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * *
17371669 CTCGAACCGCAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTT
520 C-CCAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
17371734 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
584 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
* * *
17371799 AATTTGAAGATGTGCCTAAACCCACCTACCACACTATCGATCTACGGCTTGCGCATCCCGTCTCT
649 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * * * * *
17371864 CTGGCCGACGTAGTGCTCACCTGCCCGTCCGCTCGTTTCGTTGGTCGGCTTAAGCATACGGACTT
714 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
17371929 CATTCCCAATCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAGGATCGATAGCACGCAGAGTG
779 CATTCCCAGTCTAAGATCGGACCGG----AGAGTTGCGGCAGCAGGATCGACAGCACGAAGAGGG
** * * **
17371994 GGACCCAGCCGATCCCCATCTTGTGCATCCTGCCCCTCTGGCCAACTGAGCG-CC
840 GGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* **
17372048 -CAC-AT--TTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAAAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * * * **
17372108 CATTCCTAGTCTAAGATCAGACCGAACCAAGGGTTGGGGCAGCACATGCTGGGCTCGGGCATGTG
66 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTG
* * ** * ** ** *
17372173 CTAGTGCCGCATTTCTCTTCACCGGGGCACCATCGCCGGATCATCACCAAAGAACCTGACCGGCG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACG
* * * * * * *
17372238 GCATTGGGCTTCCGGCGATCGGGGGGGCTGAGGGGTGTGCGCACATGATGTGCGGTTGGTGCTGG
196 GCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* ** *
17372303 TACTTGGCCCTAATATTGGCCCCCTATCTTTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
261 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
17372368 GCATTTGAAATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATTGGGACACTTTTT
326 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * * *
17372433 TCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTACCTTAGTTTTTTTGTGCATGCCAACAA
391 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * *
17372498 AAATACAAGGATCAC-TTTACCAAGTTTAGGGCCAAAACTCTTTCCGAAAAAATTTAAAAAAATC
456 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * *
17372562 TCAAACCGTAAAAAGTTTCAAAAATCGTGAGAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
521 -CCAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
17372627 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
585 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
* * * *
17372692 ATATAAAGATGTGCCTAAACCCACCTACCACCCCATCGATTCGCGGCTTGCGCATCCCGTCTCTC
650 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
17372757 GGGCCGCCGTA--G--CGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
715 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** * * ****
17372818 ATTCCCAGTCTAAGATTAGACTGGATCGAGGGTTACAATTGCAGGATCTG-CAGCAC-ACAGAGG
780 ATTCCCAGTCTAAGATCGGACCGGA--GA--GTTGCGGCAGCAGGATC-GACAGCACGA-AGAGG
* * * * * * *
17372881 GGGACCC-GATCAATCCCCAGCTTACGCATCCTGCCCCTTTGGTCGGCTGAGCGCCC
839 GGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * ** * * *
17372937 GTACGCTCGTTTCATGGGTTGACTTAGGCATACACAGTTCATTCCCAGTCTAAGTATACGAAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * * * *
17373002 GATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGC-GACAGCACATGATGGGCTCGAGCATGT
66 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGT
* * *
17373066 GGTGGTGCCGCATTTTT-TTCGTCGGGGCACCATCGCCGGAGCATCGTC-GAAAACCTGACGGAC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGAC
*
17373129 GGCATTGGGGTTCC-AGCGATTGGGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGGGTG-T
195 GGCATTGGGGTTCCGA-CGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
17373192 GGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAA
259 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
17373257 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
324 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
17373322 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGTTGAATTTTTTTGTGAATGCCAAA
389 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAA
*
17373387 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
454 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * *
17373452 TCTCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATTGAAAACGAGTCATCTTCCCATGAAACT
519 TC-CCAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
17373517 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
583 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
*
17373582 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCCGTCTC
648 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
17373647 GCTGGCCGGCGTAGTACCCGTCGGCCCGCCCGCCCG-TCCGCACTTTTCGTTGGTTGGCTTAGGC
713 TCTGGCCGGCGTAGT-GCC--C-GCCCGCCCGCCCGCT-TG----TTTCGTCGGTTGGCTTAGGC
* * * ** * * *
17373711 ATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGACGCTTCCGATAGTAGGATCGGCAGT
769 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA--GA-G-TTGCGGCAGCAGGATCGACAGC
* * * ** * * ** ** *
17373776 ATGCAGATGGGGACCTGGTCGATCCCTGGCTTATGCATCCCGTTCCTCTGGCCGGCTGAACGCCC
830 ACGAAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
17373841 GCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG---ATCGA---
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * *
17373900 -A----C---C--AG-T---------CTGAGGGTTGCAGTATCACATGCTGGACTCGGGCATGTG
66 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTG
* * * * ** *
17373945 CTGGTGCCACAATCTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCCG-C
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA-CCGAC
* * * * *
17374009 AGCATTAGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG-TG
195 GGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
17374073 GTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
17374138 AGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
17374203 TTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
390 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAA
* *
17374268 AAAATACAAGGATCACGACTACC-A-TTTGGGGCCAAAACTCC-TCCG-AAAAATTTAAAAAAAT
455 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
** * *
17374329 CCCGAACTACAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
520 CCC-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
17374394 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
584 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
* *
17374459 AATATGAAGATGTGACTAAACCCACCT-CCACCCTATCGATCCACGGCTTGCACATCCCGTCCCT
649 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT--CT
* ** * * * *
17374523 CTCTGGCCCGGTGTAGTGCCCGCCCTTCTGCCCGCTCGTTTCGTCGGTTGGCTTACCGCATATGG
712 CTCTGG-CCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTA-GGCATACGG
* * * *
17374588 AGTTCATTCGCCAGT-T---AT---A---AAGA-TT-------CA-GACCAACAG-A-G-GGTAG
775 AGTTCATTC-CCAGTCTAAGATCGGACCGGAGAGTTGCGGCAGCAGGATCGACAGCACGAAG-AG
* * *
17374631 GGGGACCCA-ACGATCCCCGGCTTACGCATCCC-ACCCTC-GGCCGGCTGAGCCGGCCC
838 GGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-C-GCCC
* * *
17374687 GCACGCTCGTTTCGTGGGTTGACTTTGGTATACGGGAGTTCATTCACCAGCCTAAGCATATGGGA
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTC-CCAGTCTAAGCATAT-GGA
* * * * * * *
17374752 GTTCATT-CGAAGTGTATGATCGGACCGGACTGAGGCTGTG-A-TAGCACATCCTGGGCTCGGGC
63 GTTCATTCCCAA-TCTAAGATCGGACCGGACCGAGGGT-TGCAGCAGCACATGCTGGGCTCGGGC
* ** *
17374814 ATGTGCTGGATGCCACA-TTTTCTTCGTCGGGGGGCACCATCGCCGGAGCATCACCGGAGAAACT
126 ATGTGCTGG-TGCCGCATTTTTCTTCGTC--GGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
** * *
17374878 GGACCGACGGCATTGGGGTTCCCGGTGATCGGTGGGGCCGGGGGGTTGTGTGCGCACATGATGTG
188 -GACCGACGGCATTGGGGTT-CCGACGATTGGGGGGGCC-GGGGG--GTGTGCGCACATGATGTG
* *
17374943 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTTGAGAACTCA
248 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17375008 CACCCCCTTAAAGGGGCATTTGAGATTTTACAGGTTT-CTGGCCAGTAGCCATTAACGTGGTCTG
312 CACCCCCTTAAA-GAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGT-GTCTG
* * *
17375072 AAATAGGGACA--ATTTTCAAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
374 AAATGGGGACACTTTTTTC-AAATGGTCAC-AAAATCTTGTACACTTCGAGTTCTTAGCTGAATT
* * * ** * * * *
17375135 ATTTTGTGCATGTC-ACAAAAATACCAATAATCACGTCTACCTAG-TTGGGGCAAAAAATCCTAC
437 TTTTTGTGCATGCCAAAAAAAATA-CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
17375198 CGAAAAAATTTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGA
501 CGAAAAAA-TTTTAAAAAATCC-CAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* *
17375263 GTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-CCTTTGTATGAATTTACAAGCCATAA
564 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
17375327 AAATGGCATTGGCACATAGAAATATGAAGATGTACCTAAACGCACCTACCACCCTATCAATCCAC
629 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
**
17375392 GGCTTGCGCATCTTGTCTCTCTGGC
694 GGCTTGCGCATCCCGTCTCTCTGGC
17375417 TGGCNNNNNN
Statistics
Matches: 9968, Mismatches: 1159, Indels: 556
0.85 0.10 0.05
Matches are distributed among these distances:
844 10 0.00
845 8 0.00
846 57 0.01
847 20 0.00
848 11 0.00
849 9 0.00
850 1 0.00
851 2 0.00
852 3 0.00
855 2 0.00
856 1 0.00
857 2 0.00
859 2 0.00
860 4 0.00
861 11 0.00
862 3 0.00
865 5 0.00
866 347 0.03
867 124 0.01
868 38 0.00
869 165 0.02
870 78 0.01
871 56 0.01
872 4 0.00
873 2 0.00
874 197 0.02
875 58 0.01
876 234 0.02
877 38 0.00
878 261 0.03
879 87 0.01
880 404 0.04
881 287 0.03
882 25 0.00
883 55 0.01
884 356 0.04
885 284 0.03
886 27 0.00
887 14 0.00
888 208 0.02
889 117 0.01
890 5 0.00
891 197 0.02
892 779 0.08
893 1231 0.12
894 532 0.05
895 255 0.03
896 5 0.00
897 363 0.04
898 411 0.04
899 518 0.05
900 347 0.03
901 24 0.00
902 31 0.00
903 223 0.02
904 582 0.06
905 41 0.00
906 17 0.00
907 125 0.01
908 289 0.03
909 369 0.04
910 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACG
GCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCGGAGAGTTGCGGCAGCAGGATCGACAGCACGAAGAGGGGGACCC
AGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
Found at i:17375226 original size:27 final size:25
Alignment explanation
Indices: 17375185--17375242 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
17375175 CTAGTTGGGG
*
17375185 CAAAAAATCCTACCGAAAAAATTTT
1 CAAAAAATCCTACCGAAAAAAGTTT
* *
17375210 TAAAAAATCCTGAACCGTAAAAAGTTT
1 CAAAAAATCCT--ACCGAAAAAAGTTT
17375237 CAAAAA
1 CAAAAA
17375243 TCATGAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 10 0.37
27 17 0.63
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.22
Consensus pattern (25 bp):
CAAAAAATCCTACCGAAAAAAGTTT
Found at i:17375231 original size:26 final size:27
Alignment explanation
Indices: 17375186--17375249 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 27
17375176 TAGTTGGGGC
**
17375186 AAAAAATCCT--ACCGAAAAAATTTTT
1 AAAAAATCCTGAACCGAAAAAAAGTTT
*
17375211 AAAAAATCCTGAACCG-TAAAAAGTTT
1 AAAAAATCCTGAACCGAAAAAAAGTTT
* *
17375237 CAAAAATCATGAA
1 AAAAAATCCTGAA
17375250 AAATAGAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 10 0.31
26 18 0.56
27 4 0.12
ACGTcount: A:0.53, C:0.16, G:0.08, T:0.23
Consensus pattern (27 bp):
AAAAAATCCTGAACCGAAAAAAAGTTT
Found at i:17376597 original size:26 final size:26
Alignment explanation
Indices: 17376563--17376613 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17376553 TGATTTAGGT
*
17376563 ATACGGAGTTCATTCCCAATCTAAGC
1 ATACAGAGTTCATTCCCAATCTAAGC
*
17376589 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
17376614 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:17378376 original size:26 final size:26
Alignment explanation
Indices: 17378347--17378399 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17378337 GTTGACTTAG
*
17378347 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17378373 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17378399 G
1 G
17378400 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17378610 original size:885 final size:884
Alignment explanation
Indices: 17376493--17381874 Score: 6963
Period size: 885 Copynumber: 6.1 Consensus size: 884
17376483 GTCCATGACA
* * * * * * *
17376493 CCCGGCTTGCGCGTCCCGCCCCTCTGGCTGGCTGAGTGACCGCATGCTCATTTCATGGGTTGATT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACT
* * * * *
17376558 TAGGTATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCA
66 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGA-CA
* * * ** * * *
17376623 -GACCGAGGGTTTCGGCAGCACATGCTGAGCTTCGACCATGTGCTGGTGCCGTATTTTTCTTCGT
130 GGACC-AAGGTTGCGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCATATTTTTCTACGC
* * * * *
17376687 TGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCCGCATTGGGGTTCCGACGATCGG
193 CGGGGCGCCA---T-----CA-C--CGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGG
*
17376752 GG-GGACCGGGGGGGCT-TGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGG
247 GGAGG-CCGGGGGGG-TGCGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATT-G
* * * * *
17376815 GCCC-CTATCCCTCATCTAACCTCGAGAACTCACACCGCCTTAAAGAGCAATTGAGATTTTACAG
309 GCCCTCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCATAAAGAGCATTTGAGATTTTACAG
* *
17376879 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCATAAAATC
374 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
17376944 TTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTC
439 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTC
* * *
17377009 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
504 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* * *
17377074 CCAAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCAGACGAAGGCTTAAGGGA
569 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGA
*
17377139 CCATTGTATGAATTTACAAGCCATAAGAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
634 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
* * *
17377204 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGCCTCTCTGGCCGACGTAGTGCCCG
699 ACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGCCTCTCTGGCCGACTTAGTG--C-
* * *
17377269 CCTGCCCGCCCGCTCGTTTCATCGGTTGGCGTAGGCATACGAAGTTCATTCCCAGTCTAAGATTG
761 CC-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* ** * * * * *
17377334 GATTGGATTGAGGGTTGCGGTAGCAGGATTGGCAGCATGCAGA-AGGGGAC-CTGGCCGATC
825 GATCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGA-GGGACTC-GACCGATC
* * ** * * * **
17377394 CCCGGCTTGCGCATCCCGCCCCACTAGCCGGTTGGGTGCCCGCATGTTGGTTTCGTGGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACT
* *
17377459 TAGGCGTACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACAG
66 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACAG
17377524 GATCCAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTACGCCG
131 GA-CCAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTACGCCG
*
17377589 GGGCGCCATCACCGGAGAACCTGACCGATGGCATTGGGGTTCCGATGATCGGGGAGGCCGGGGGG
195 GGGCGCCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGAGGCCGGGGGG
17377654 GTGCGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCTCTATCCCTCAT
260 GTGCGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCTCTATCCCTCAT
* *
17377719 CAAACCTCGAGAACTCAAACCCCCATAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCATTAGC
325 CAAACCTCGAGAACTCAAACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
17377784 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
390 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* ** *
17377849 TTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGCAGCG
455 TTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
17377914 AAAACTCCTTCCGAAAAGATTTTAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCGTGAAAAA
520 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
*
17377979 TAGAAAACGAGTTGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTA
585 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTA
*
17378044 CAAGCCATAAAAATGGCATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCT
650 CAAGCCATAAAAATGGCATTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
**
17378108 TATCGATCCACGGCTTACGCATCCTACCTCTCTGGCCGACTTAGTGCCCGCCCGCCCGCTCGTTT
714 TATCGATCCACGGCTTACGCATCCCGCCTCTCTGGCCGACTTAGTGCCCGCCCGCCCGCTCGTTT
* * * ** * * *
17378173 CGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTTGGATCGGACCAGACCGAGGGTTGTA
779 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCA
* * *
17378238 GCAGCAGGATCGGCAGCACGTAGAGAAGGACTCGATCGATC
844 GCAGCAGGATCGGCAGCACGCAGAGAGGGACTCGACCGATC
* * *
17378279 CCCGACTTGCGCATCCAGCCCCTCTGGCCGACTGAACGCCCGCATGCTCATTTCGTGGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACT
17378344 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACAG
66 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACAG
*
17378409 GATCCAAGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTACGCCG
131 GA-CCAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTACGCCG
*
17378474 GGGCGCCATCACCGGAGAACCTGACCGATGGCATTGGGGTTCCGATGATCGGGGAGGCCGGGGGG
195 GGGCGCCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGAGGCCGGGGGG
17378539 GTGCGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCTCTATCCCTCAT
260 GTGCGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCTCTATCCCTCAT
* *
17378604 CAAACCTCGAGAACTCAAACCCCCATAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCATTAGC
325 CAAACCTCGAGAACTCAAACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
17378669 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
390 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
17378734 TTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCG
455 TTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
17378799 AAAACTCCTTCCGAAAAGATTTTAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCGTGAAAAA
520 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
*
17378864 TAGAAAACGAGTTGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTA
585 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTA
*
17378929 CAAGCCATAAAAATGGCATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCT
650 CAAGCCATAAAAATGGCATTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
17378993 TATCGATCCACGGCTTATGCATCCCGCCTCTCTGGCCGACTTAGTGCCCGCCCGCCCGCTCATTT
714 TATCGATCCACGGCTTACGCATCCCGCCTCTCTGGCCGACTTAGTGCCCGCCCGCCCGCTCGTTT
* * * ** *
17379058 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCGGACCAAACCGAGGGTTGTA
779 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCA
* ** * *
17379123 GCAGCAAGATCGGCAGCACATAGAGAAGGACTCGATCGATC
844 GCAGCAGGATCGGCAGCACGCAGAGAGGGACTCGACCGATC
* * *
17379164 CCCGACTTACGCATCCAGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACT
17379229 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACAG
66 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACAG
*
17379294 GATCCAAGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTACGCCG
131 GA-CCAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTACGCCG
*
17379359 GGGCGCCATCACCGGAGAACCTGACCGATGGCATTGGGGTTCCGATGATCGGGGAGGCCGGGGGG
195 GGGCGCCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGAGGCCGGGGGG
17379424 GTGCGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCTCTATCCCTCAT
260 GTGCGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCTCTATCCCTCAT
* *
17379489 CAAACCTCGAGAACTCAAACCCCCATAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCATTAGC
325 CAAACCTCGAGAACTCAAACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
17379554 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
390 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
17379619 TTTAGCTGAATTTTTTTTTTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGC
455 TTTAGCTGAA-TTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * ** * *
17379684 AAAAACTCCTTCCGAAAAGATTTTAAAAAATCTTGAATCGCAAAAAGTTTCAAAAATCATGAAAA
519 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * * *
17379749 ATAGAAAACGAGTCGTCTTGTCATGAAACTTCACAAGAAGGCTTAAGGGACCACTGTTTGAATTT
584 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTT
* *
17379814 ACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCGCCTACCACCC
649 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* ** * *
17379879 TATCGATCCACGGCTTACGCATCCCGTCTCTCTAACCGACATAGTGCCCGCCCGCCTGCGCGCTT
714 TATCGATCCACGGCTTACGCATCCCGCCTCTCTGGCCGACTTAGTGCCCGCCCG-C--C-CGCTC
* * * * *
17379944 GTTTCATCAGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGAT
775 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
* * * * *
17380009 TGCAGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATC
840 TGCAGCAGCAGGATCGGCAGCACGCAGAGAGGGACTCGACCGATC
* * * ** * * *
17380054 CCTGGCTTGCACGTCCCGCCCCTCTAACC-AGCTGAGCGCCCGCACGCTCGTTTCGTTGGGGTGA
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCATGCTCATTTCG-TGGGTTGA
*
17380118 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G----------------GA-C---C
64 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGAC
* * * * *
17380158 -GGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGT
129 AGGACCAA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTACGC
* * * * **
17380222 CGGGGCACCATTGCGGAGCATCGTCGGAGAACCTGACCGGCAGCATTCGGGTTCCGACAATCGGG
193 CGGGGCGCCA-T------CA-C--CGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGG
** * * * *
17380287 G-GGCCATGGGGGTGTGCGAAGATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCC
248 GAGGCCGGGGGGGTGCGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCC
* * * *
17380351 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTT
313 TCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCATAAAGAGCATTTGAGATTTTACAGGTTT
* *
17380416 GCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
378 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * *
17380481 ACACTTCAAGGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAGTGCAAGGATCATGTCTACC
443 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
17380546 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAATCCCAAACCTCAAAAAGTTTCAA
508 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAA
* * * *
17380611 AAATCCTAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACACAAAGGCTTAAGGGACCA
572 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCA
* *
17380676 TTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACC
637 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
* * * * * *
17380741 CAACCAACCACCCTATCAATCCACGGCTTGCGCATCCTGCCTATCTGGCCG-GTGTAGTGCCCGC
702 C-ACCTACCACCCTATCGATCCACGGCTTACGCATCCCGCCTCTCTGGCCGACT-TAGTG-CC-C
* * * *
17380805 ATGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGG
763 --GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * **
17380870 ATCGGACCGAGGGTTACAGCGGTAGGATCGGCAGCACGCAAAGGGGGACTCGACTAATC
826 ATCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGAGGGACTCGACCGATC
* * * * * * * *
17380929 CCCGGCTTGTGCATCTCGGCCCTC-GACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACT
* *
17380993 TAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C--GGATC-G--A-
66 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACAG
* *** * *
17381038 G-----GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGACGG
131 GACCAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTACGCCGG
* * *
17381098 GGCACCATCGCTGGAGCATCACCGAAGAACCTGACCGACGACATTGGGGTT-CGATGGTC-GGGA
196 GG------CGC-----CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGA
** * * *
17381161 GGGCTTGGGAGGTGTGCGCACATGATGTGTGGTGGGTGCTGGTGCTTGGCCCTTATATTGGCCC-
250 -GGCCGGGGGGGTGCGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCT
* * **
17381225 CTTATCCCTCATCAAACCTCGAGAACTCACATCCCTTTAAAGAGCATTTGAGATTTTACAGGTTT
314 C-TATCCCTCATCAAACCTCGAGAACTCAAACCCCCATAAAGAGCATTTGAGATTTTACAGGTTT
* *
17381290 GCTGGCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
378 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
17381355 ACACTTCGAGTTATTAGCTGAATTTTTTTGTGCAT-CCAACAAAAATACAAGGATCACGTCTACC
443 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
17381419 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAA
508 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* * **
17381484 AATCATG-AAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCAT
573 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCAT
** *
17381548 T-TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATTTGCCTAAA-CC
638 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
* * * * * *
17381611 ATCTACTACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGAGCTCGCCCG
703 ACCTACCACCCTATCGATCCACGGCTTACGCATCCCGCCTCTCTGGCCGAC-T-TAG-T-GCCCG
* * * *
17381676 CCCGTCCGCCCACTCATTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
764 --C--CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * *
17381741 GATCGGACTGAGGGTTGC-G--GCAGCAT----A-CA-G-A-AG-GGGACCCGGCCGATC
825 GATCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGAGGGACTCGACCGATC
* * * * * *
17381789 CCCAGCTTGCGCATCCCGTCCCTTTGGCC-AGCTGAGTGCCCGCACGTTCATTTCGTGGGTTGAC
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCATGCTCATTTCGTGGGTTGAC
17381853 TTAGGCATAC-GAAGTTCATTCC
65 TTAGGCATACAG-AGTTCATTCC
17381875 TGGTCTAATA
Statistics
Matches: 4062, Mismatches: 351, Indels: 176
0.89 0.08 0.04
Matches are distributed among these distances:
860 31 0.01
861 56 0.01
862 1 0.00
863 1 0.00
864 6 0.00
865 63 0.02
866 2 0.00
868 43 0.01
869 8 0.00
870 62 0.02
871 57 0.01
872 105 0.03
873 235 0.06
874 604 0.15
875 196 0.05
876 4 0.00
877 3 0.00
878 3 0.00
879 9 0.00
883 1 0.00
884 2 0.00
885 1418 0.35
886 283 0.07
887 3 0.00
888 7 0.00
889 506 0.12
890 139 0.03
891 39 0.01
892 2 0.00
897 1 0.00
900 38 0.01
901 132 0.03
902 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACT
TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACAG
GACCAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTACGCCGG
GGCGCCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGAGGCCGGGGGGG
TGCGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCTCTATCCCTCATC
AAACCTCGAGAACTCAAACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTACGCATCCCGCCTCTCTGGCCGACTTAGTGCCCGCCCGCCCGCTCGTTTCA
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGC
AGCAGGATCGGCAGCACGCAGAGAGGGACTCGACCGATC
Found at i:17379261 original size:26 final size:26
Alignment explanation
Indices: 17379232--17379284 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17379222 GTTGACTTAG
*
17379232 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17379258 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17379284 G
1 G
17379285 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17381959 original size:147 final size:147
Alignment explanation
Indices: 17381699--17382037 Score: 457
Period size: 147 Copynumber: 2.3 Consensus size: 147
17381689 TCATTTTATC
* * * * * *
17381699 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGATCGGACTGA-GGGTTGCGGC
1 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGGAT-CGGC
*** * * *
17381762 AGCATACAGAAGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGTCCCTTTGGCCAGCTGAGTG
64 AGCACGTAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTTTGGCCAGCTGAGCG
*
17381827 CCCGCACGTTCATTTCGTG
129 CCCGCACGCTCATTTCGTG
** *
17381846 GGTTGACTTAGGCATACGAAGTTCATTCCTGGTCTAATATCGAACCAGACCGAGGGGATCGGCAG
1 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGGATCGGCAG
* ***
17381911 CACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGTTGGCTGAGCGCC
66 CACGTAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTTTGGCCAGCTGAGCGCC
*
17381976 CGCACGCTCGTTTCGTG
131 CGCACGCTCATTTCGTG
17381993 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAAC
1 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAAC
17382038 TGGATCGAGG
Statistics
Matches: 166, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
147 161 0.97
148 5 0.03
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.22
Consensus pattern (147 bp):
GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGGATCGGCAG
CACGTAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTTTGGCCAGCTGAGCGCC
CGCACGCTCATTTCGTG
Found at i:17382914 original size:26 final size:26
Alignment explanation
Indices: 17382878--17382930 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17382868 GTTGACTTAG
*
17382878 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17382904 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17382930 G
1 G
17382931 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17383940 original size:718 final size:720
Alignment explanation
Indices: 17382904--17384394 Score: 2303
Period size: 718 Copynumber: 2.1 Consensus size: 720
17382894 CCCAGTCTAA
** * *
17382904 GCATACAGAGTTCATTCCCAGTCTAAGATC-GAACTGGATCGAGGGTTACGGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTACGGCAGCACATGCTGG
* *
17382968 GCTCAGGAATGTGCTGGGGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCATTGGAG
65 GCTCAGGAATGTGCTGGGGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGAAG
* * ** * * *
17383033 AACCTGATCAATGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGTGTGCGCGCACATGATG
130 AACCTGACCAACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACACATGATG
*
17383098 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
195 TGCGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
17383163 ACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
260 ACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
* *
17383228 ATGGGGACATTTTTTTCACATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTT
*** *
17383293 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACCTCCTTCCGAA
390 TGCACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA-CTCCTTCCGAA
*** *
17383357 AAAATTTTAAAAAATCTTGAACCGT-AAAAACTTTCAAAAATCTTGAAAAATAGAAAACGAGTCG
454 AAAATTTTAAAAAATCCCAAACC-TAAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
17383421 TCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
518 TCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
17383486 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
583 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* **
17383551 TGCGCATCCCGTCTCTCTGGCC-AGCATAGTGCCCGCCCGCCCTCCCGCTTGCTCATTTCATCGG
648 TGCGCATCCCGTCTCTCTGGCCGA-CATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGG
17383615 TTGGATTAG
712 TTGGATTAG
* * * *
17383624 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTTCGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
* * * * * *
17383689 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGAAGA
66 CTCAGGAATGTGCTGGGGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGAAGA
* * *
17383754 ACCTGACCGACGGCATTGGGGTTCTGACGATC-AGGGGGCCGGGGGG-GTGTGCACACATGATGT
131 ACCTGACCAACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACACATGATGT
* *
17383817 GGGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
196 GCGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
17383882 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTAAAA
261 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* * *
17383947 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTTAGCTGAATTTTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTT
*
17384012 GCACATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
391 GCACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
17384077 AATTTTAAAAAATCCCAAACCTAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
456 AATTTTAAAAAATCCCAAACCTAAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* **
17384142 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATTTC
521 TGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
* *
17384207 ATTGGCATGCAGTAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
586 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* **
17384272 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTTGTCGGTTGG
651 GCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGG
*
17384337 CTTAG
716 ATTAG
* * * * *
17384342 GCATCCAGAGTTCATTCCCAGACTCAGATCAGACCAAACTGAA-GGTTACGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-CAAGGGTTACGGCA
17384395 ACAGGATCAG
Statistics
Matches: 697, Mismatches: 69, Indels: 12
0.90 0.09 0.02
Matches are distributed among these distances:
717 1 0.00
718 537 0.77
719 20 0.03
720 138 0.20
721 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (720 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
CTCAGGAATGTGCTGGGGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGAAGA
ACCTGACCAACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACACATGATGT
GCGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTT
GCACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AATTTTAAAAAATCCCAAACCTAAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGG
ATTAG
Found at i:17384537 original size:26 final size:26
Alignment explanation
Indices: 17384501--17384553 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17384491 GTTGACTTAG
* *
17384501 GCATATGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17384527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17384553 G
1 G
17384554 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17386717 original size:709 final size:711
Alignment explanation
Indices: 17385360--17386863 Score: 2197
Period size: 709 Copynumber: 2.1 Consensus size: 711
17385350 AGCGCCTGCA
* * * * *
17385360 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGATTGGACCGGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
* * * * * *
17385425 AGGCTTGCAGCAGCACATACTGGGCTTGGGAATGTGCTGCTGCCGCATTTTTCTTCGCCAGGGCA
66 AGGGTTGCAGTAGCAAATACTGGGCTCGGGAATGTACTGCTGCCACATTTTTCTTCGCCAGGGCA
* * * *
17385490 CCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCG
131 CCATCGCCAGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCG
* * ** *
17385555 GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
196 AGGGGGTGTGCGCACATGATGTACAATGGGCACTAGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
17385620 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
261 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
17385685 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
326 ATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
** * * *
17385750 GAGTTTTTAACTTTTTTTTTTTTGCATGCCAACAAAAATAAAAGGATCGCATCTACAAAGTTTGG
391 GAGTTTTTAACTAATATTTTTGTGCATGCCAACAAAAATAAAAGGATCCCATCTACAAAGTTTGG
* *
17385815 GGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGA
456 GGCCAAAAATCCTGCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
*
17385880 AAAATAAAAAACGAGTTGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
521 AAAATAAAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
17385945 TTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
586 TTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
17386010 CCCTATTGATCCACGACTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTG-CT-CGCCCGCC
651 CCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCTCCGCCCGCC
* * * *
17386069 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCAGACCA
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
* * * * * *
17386134 AGGGTTGCAGTAGCAAATGCTGGGCTCGGGCATTTACTGGTGCCACATTTTTCTTCGTCGGGGCA
66 AGGGTTGCAGTAGCAAATACTGGGCTCGGGAATGTACTGCTGCCACATTTTTCTTCGCCAGGGCA
* * * ** * *
17386199 CCATCGCCAGAGCATCGCCGGAGAACCTGACCGATGGTATTAGGGTTCCGGTGATTGGGGGGGC-
131 CCATCGCCAGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCG
* *
17386263 AGGGGGTGTGCGCACATGATGTGCAATTGGCACTAGTACTTGGCCCTTATATTGGCCCCCTATCC
196 AGGGGGTGTGCGCACATGATGTACAATGGGCACTAGTACTTGGCCCTTATATTGGCCCCCTATCC
*
17386328 CTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
261 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
17386393 ATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
326 ATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
17386458 GAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCCCATCTACTAAGTTTG
391 GAGTTTTTAACT-AATATTTTTGTGCATGCCAACAAAAATAAAAGGATCCCATCTACAAAGTTTG
** * * *
17386523 GTTCCAAAACTCCGTGCGAAAAAAA-TTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
455 GGGCCAAAAATCC-TGCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
* *
17386587 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
519 GAAAAATAAAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
17386652 AATTTATATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
584 AATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
17386717 CACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGGCGGCATAGTGCCCACCTGCCCGCC
649 CACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCAGCATAGTG----CCT--CCGCC
17386782 CGCC
708 CGCC
* * * * ** *
17386786 CGTTCGTTTCTTCAGTTGGCTTAGGCATGCATAGTTCATTCCCAGTCTAAGATTAGACCAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
*
17386851 AGGGTTGCGGTAG
66 AGGGTTGCAGTAG
17386864 TAGGATCGGC
Statistics
Matches: 702, Mismatches: 83, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
708 195 0.28
709 422 0.60
710 9 0.01
714 2 0.00
717 74 0.11
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (711 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
AGGGTTGCAGTAGCAAATACTGGGCTCGGGAATGTACTGCTGCCACATTTTTCTTCGCCAGGGCA
CCATCGCCAGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCG
AGGGGGTGTGCGCACATGATGTACAATGGGCACTAGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
ATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAACTAATATTTTTGTGCATGCCAACAAAAATAAAAGGATCCCATCTACAAAGTTTGG
GGCCAAAAATCCTGCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
AAAATAAAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCTCCGCCCGCC
Found at i:17386998 original size:26 final size:26
Alignment explanation
Indices: 17386969--17387021 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17386959 GTTGATTTAG
*
17386969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17386995 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17387021 G
1 G
17387022 ATTGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17388713 original size:722 final size:717
Alignment explanation
Indices: 17386995--17394357 Score: 7437
Period size: 722 Copynumber: 10.1 Consensus size: 717
17386985 CCCAGTCTAA
* * *
17386995 GCATACGAAGTTCATTCCCAGTCTAAGAT-TGAATCGGATCGAGGGTTGC-AGCAGCACATGCTG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCTA-CAGCACATGCTG
* * * * * *
17387058 GGCTCGGGCATGTGCTGGTGCCGCATTTTACTTCATCGGGG---CA---C-----CATCGTCGGA
64 GGCTCGAGCATGTGCTGGTGTCACGTTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGTCGGA
* * *
17387112 GAACCTGACTGACGGCA-TAGGGGTTCCGTCGATCGGGGGC-C--GGG-GGGTGTGCGCACATGA
129 GAACCTGACTGGCGGCATTA-GGGTTCTGGCGATCGGGGGCGCGAGGGCGGGTGTGCGCACATGA
* * * * *
17387172 TGTGCGATCGGTGCTAGGTACTTGGGCCCTTATATTGGCCCCCTATTCCCCCATCAAACCTTGAG
193 TGTGCTATGGGTGCT-GGTACTT-AGCCCTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGAG
* *
17387237 AACTCACACCCCTGT--AGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGT
255 AACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
17387300 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTG-AT
320 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTGAAT
* * * * ** *
17387364 TTGTTTTGTGGATGCCAATAAAAATAAAAGGATCACGTCAACCAAGTTCAGGGCCAAAAATCC-T
385 TT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
17387428 TCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAAGCGTAAAAAATAGAAAAC
449 TC-GAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAAT
* *
17387493 GAGTCATCTTGCCATGAAACTTCACGTGAAAGCTTAA-GGA-CATTGTATGAATTTACAAGCCAT
512 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** *
17387556 -AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCC
577 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
17387620 ACGGCTTGCACAT-CCGTCTCTTTGGCAGACGTAGTGCCCG-CC-CCC--CG-C-TCG-TTAGTC
642 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCGCCATCGTTTCGTC
*
17387677 GGTTGGTTTAG
707 GGTTGGCTTAG
* ** * *
17387688 GCATAC-AGAGTTCATTCCCAATCTCCTGATC-GA-TCGGACAGAGGGTTGCTGCAGCACATGCT
1 GCATACGA-AGTTCATTCCCAGTCT-AAGATCAGACT-GGACCGAGGGTTGCTACAGCACATGCT
* ** *
17387750 GGGCTCGACCATGTGCTGGTG---CGTATTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGTC
63 GGGCTCGAGCATGTGCTGGTGTCACGT-TTTTCTTCACCGGGGCACCATCGCT-AGAGCATCGTC
* * * *
17387811 GGAGCACCTGACTGGCGGCATTGGGGTTCTGGCGATCGGGGG-GACCG-GTGGCGGGTTTGTGCA
126 GGAGAACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGCG--CGAG-GGCGGGTGTGCGCA
* *
17387874 CATGATGTGCGAT-GGTGATGGTACTTAGCCCTTATAGTTGGCCCCCTATCCCTCATCAAACCTC
188 CATGATGTGCTATGGGTGCTGGTACTTAGCCCTTATA-TTGGCCCCCTATCCCTCATCAAACCTC
*
17387938 GAGAACTTACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
252 GAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
17388003 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTG
317 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTG
*
17388068 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
382 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
17388133 TTTCGAAAAAATTTTAAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
447 TTTCGAAAAAATTTT-AAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
17388198 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-AATGCC
511 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCC
17388262 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
575 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
17388327 CCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTCGCACATTCGTT
640 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-TCGC-CA-TCGTT
* *
17388392 TTGTCGGTTCGCTTAG
702 TCGTCGGTTGGCTTAG
*
17388408 GCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCTACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCTACAGCACATGCTGGG
17388473 CTCGAGCATGTGCTGGTGTCACGTTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGTCACGTTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGTCGGAGA
*
17388538 ACCTGACTGGCGGCATTATGGTTCTGGCGATCGGGGGCGCTGAGGGCGGGTGTGCGCACATGATG
131 ACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGCGC-GAGGGCGGGTGTGCGCACATGATG
* * * *
17388603 TGCTACGGGTTCTGGTACTTAGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTT
195 TGCTATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
17388668 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
17388733 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTGAATTTTTT
* * *
17388798 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* *
17388863 AAATTTTAAAAAAATTCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCAT
455 AAATTTT-AAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
** *
17388928 CTTGCCACACAACACTTCACGTGAAGCGACTTAAGGGA-CATTGTATGAATTTA-ATGCCATAAA
519 CTTGCCA-TGAA-ACTTCACGTGAAG-G-CTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
17388991 AATGGAATTGGCACATAGAAATATGAAAGATGCTGCCTAAACCC-CCTGCCACCCTATCGATCCA
580 AATGGCATTGGCACGTAGAAATATG-AAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
17389055 CGGCTTACGCATGCCGTCTCTCTGGCCGGCGTAGTGCCGCGCCCGCCCGTTCGCCATTCTTTTTG
643 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-CGCCCGCCCG-TCGCCA-TCGTTTCG
* * *
17389120 TCGGTTCGCATGG
705 TCGGTTGGCTTAG
*
17389133 GCCATACGAAGTTCATGTCCCAATCTAAGAAT-AGACTGGAGCCGAGGGTTGCTACATGCACAAT
1 G-CATACGAAGTTCAT-TCCCAGTCTAAG-ATCAGACTGGA-CCGAGGGTTGCTACA-GCAC-AT
* * * * *
17389197 GCTGCG-TCGTAGCATGGTGCTGGTGGTCGCGATTTTCTTCACCGGCGCCCCCATCGCTAGAGCA
60 GCTGGGCTCG-AGCAT-GTGCTGGT-GTCACGTTTTTCTTCACCGG-GGCACCATCGCTAGAGCA
* *
17389261 TCG-CCGAGAACCTGACTGGGCGGCA-TATGGTTCTGGCGATCGGGGGC-CGCAGGGCGGGTGAT
121 TCGTCGGAGAACCTGACT-GGCGGCATTAGGGTTCTGGCGATCGGGGGCGCG-AGGGCGGGTG-T
*
17389323 GCGCACATGATGTGCTAATGGGTTCTGGTACTTAGCCCTTATACTTGG--CCCTATCCCTTCATC
183 GCGCACATGATGTGCT-ATGGGTGCTGGTACTTAGCCCTTATA-TTGGCCCCCTATCCC-TCATC
* * *
17389386 -AACCTC-AGAACTCACACCCCTATTAAAGACCACTTGAGATTTTACAGGGTTGGCTGCCAGTAG
245 AAACCTCGAGAACTCACACCCCT-TTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAGTAG
* * *
17389449 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGT
308 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGC
* * ** *
17389514 TTTTAGCCGAATTTTTTTGTTCATGCCAAAAAATGTAAAAGGATCACGTCTACCAAGTTTGGGG-
373 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * ** * *
17389578 -AAGAACGCTTTTTGAAAAAATTTTAAAAAATCCTAAACTGCAAAAAGTTTCAAAAATCATGAAA
438 CAA-AACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAA
* * * *
17389642 ATTAGAAAACGAGTCGTCTTTCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
502 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
17389707 TACAAGCCATAAAAATGGAACTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACC
567 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * **
17389772 CTATCTATCCACGGCTCGCGCATCCCGTCTCTCTAACCGACGTAGTGCCCGCCCGCCCGCTCG-C
632 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-TCGCC
17389836 -TCGTTTCGTCGGTTGGCTTAG
696 ATCGTTTCGTCGGTTGGCTTAG
* * * * * **
17389857 GCATACGGAGTTCAATCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCTACAGCACATGCTGGG
* * * * ** * *
17389922 CTCGGGCAT-TGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCTTCGGAG
66 CTCGAGCATGTGCTGGTGTCACGTTTTTCTTCACCGGGGCACCATCGCT-AGAGCATCGTCGGAG
* ** * * * *
17389985 AACCTGACCGAAGGCATTAGGGTTCCGACGATCGGGGGGGC-CGGG-GGGTGTGCGCACATGATG
130 AACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGCGCGAGGGCGGGTGTGCGCACATGATG
* * *
17390048 TG-TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACT
195 TGCT-ATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
17390112 CGCACCACC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTA
259 CACACC-CCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* **
17390176 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-GATTTTTTAGCTGAATTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCGAGCTTTTAGCTGAATTT
* * *
17390240 TTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAAC-CCTTCC
387 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTTC
* * * *
17390304 AAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
451 GAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
* *
17390369 CGTCTTGCCATGAAACTTTATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
516 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
17390434 ATGGCATTGGCATGCAGAAATGTGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGG
581 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
17390499 CTTGCGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCAG-C-CCACTCGTTTCGTCGA
646 CTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGTCGCCA-TCGTTTCGTCGG
17390561 TTGGCTTAG
709 TTGGCTTAG
* * ** * * *
17390570 CCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC--TA-CA-G--C-ACA
* * ** * ****
17390635 -GCACGTAGAGGGGGACTCGATCGATCCTCGCTTGCGCATCCCGCCCCTC-T-AGCCGGCTGAGC
59 TG--C-T-----GGG-CTCGAGC-AT-GT-GC-TG-GTGTCACGTTTTTCTTCA-CCGG--G-GC
* * *** *** ** *
17390697 GCC--CGC-A-CGC-TCGTTTCATG-GGTTGACT-TAGGCA-TACGGAGTTCATTCCCAGTCTAA
106 ACCATCGCTAGAGCATCGTCGGA-GAACCTGACTGGCGGCATTA-GG-GTTC--T----GGC---
** ** * * * ** *
17390754 GATC-GGACCG-GACCGAGGGT-TACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
159 GATCGGGGGCGCGAGGGCGGGTGT--G-C-GCACATGATGTGCTATGG---GTGCTGGT---AC-
*** * * * * * * * * * ** *
17390816 TT-TTTCTT-TGTCGGGGCACC-AT-CGTCGGAGC-ATCATCGGAGAACCCGACCGACGGCATT-
213 TTAGCCCTTATAT-TGGCCCCCTATCCCTC--ATCAAACCTC-GAGAACTC-A-C-ACCCCTTTA
** ** ** *** * *** * * * **
17390875 --G-G-GGTTCCGATGAT-C-GGGGGGCCGGGGGGGTATCCA-CACATGATGT-TCGATGTGTGT
271 AAGAGCATTTGAGATTTTACAGGTTTG-C-TGCCAGTAGCCATTA-AAG-TGTCT-GAAATG-G-
* * ** ** * ** *
17390932 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
329 -GG-A-----CACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTG---T-ACA-----TT-T
* * * * ** * *
17390997 AGAGCATTT-G-AG-ATTTTACAGGTTTGCTTCCAGTAGCC-ATTAAAGTGTCTGAAATTGGGA-
368 CGAGCTTTTAGCTGAATTTT-----TTTG--TGCA-T-GCCAAAAAAAAT-AC---AA---GGAT
* * ** * * **
17391057 CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTGTG
417 CACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTTCGA------A----AA--AATT-T-
** * ** *
17391118 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAT
461 --T----A-AAAAAT-C-CCGAACA-G-C-AAAAAGTTT-----CAAAAAT-C--GTG-AAAAA-
* *** *
17391183 TTTAAAAAATCCCGAACCG-CAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCATCTTG
504 --TAGAAAAT---G-A--GTC-----G--TC-----T--T--GCCAT-G-AAAC--TTCA-C--G
17391247 CCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
538 ---TG--A----A---G---GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
17391312 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCAC
588 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
17391377 ATCCCGTCTCTTTGGCAGACGTAGTGCCCGCCCG-CC--CG-C-TCGTTTCGTCGGTTGGTTTAG
653 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCGCCATCGTTTCGTCGGTTGGCTTAG
** * *
17391437 GCATAC-AGAGTTCATTCCCAGTCTCTGATC-GA-TCGGACAGAGGGTTGCTGCAGCACATGCTG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCTACAGCACATGCTG
** *
17391499 GGCTCGAGCATGTGCTGGTG-C-CGTATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGTC
64 GGCTCGAGCATGTGCTGGTGTCACG--TTTTTCTTCACCGGGGCACCATCGCT-AGAGCATCGTC
* * * *
17391561 GGAGCACCTGACTGGCGGCATTGGGGTTCTGGCGATCGGGGG-GACCG-GTGGCGGGTTTGTGCA
126 GGAGAACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGCG--CGAG-GGCGGGTGTGCGCA
* *
17391624 CATGATGTGCGATGGGTGATGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
188 CATGATGTGCTATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
17391689 AGAACTTACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGT
253 AGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
17391754 GTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTG
318 GTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTG
*
17391819 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
382 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
17391884 TTTCGAAAAAATTTTAAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
447 TTTCGAAAAAATTTT-AAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
17391949 TGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-AATGCC
511 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCC
*
17392013 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGAT
575 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
17392078 CCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTCGCACATTCGTT
640 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-TCGC-CA-TCGTT
* *
17392143 TTGTCGGTTCGCTTAG
702 TCGTCGGTTGGCTTAG
*
17392159 GCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCTACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCTACAGCACATGCTGGG
17392224 CTCGAGCATGTGCTGGTGTCACGTTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGTCACGTTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGTCGGAGA
*
17392289 ACCTGACTGGCGGCATTATGGTTCTGGCGATCGGGGGCGCTGAGGGCGGGTGTGCGCACATGATG
131 ACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGCGC-GAGGGCGGGTGTGCGCACATGATG
* * * *
17392354 TGCTACGGGTTCTGGTACTTAGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTT
195 TGCTATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
17392419 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
17392484 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTGAATTTTTT
* * *
17392549 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* *
17392614 AAATTTTAAAAAAATTCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCAT
455 AAATTTT-AAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
**
17392679 CTTGCCACAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-AATGCCATAAAAAT
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAAT
*
17392743 GGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
583 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
17392808 TACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTCGCCCATTCGTTTTGTCGGT
648 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-TCG-CCA-TCGTTTCGTCGGT
* * *
17392873 TCGCATGG
710 TGGCTTAG
*
17392881 GCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCTACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCTACAGCACATGCTGGG
* * *
17392946 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGTCACGTTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGTCGGAGA
*
17393011 ACCTGACTGGCGGCATTATGGTTCTGGCGATCGGGGGCGCCGAGGGCGGGTGTGCGCACATGATG
131 ACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGCG-CGAGGGCGGGTGTGCGCACATGATG
* *
17393076 TGCTATGGGTTCTGGTACTTAGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTC
195 TGCTATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17393140 ACACCCCTTTAAAGACCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
17393205 ATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTGAATTTTTT
* ** * * * *
17393270 TGTTCATGCCAAAAAATGTAAAAGGATCACGTCTACCAAGTTTGGGG--AAGAACGCTTTTTGAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA-AACTCCTTTCGAA
** ** * * *
17393333 AAAATTTTAAAAAATCCTAAACTTCAAAAAGTTTCAAAAATCATGAAAATTAGAAAACGAGTCGT
454 AAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
* *
17393398 CTTTCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
17393463 GAACTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCTATCCACGGCTC
584 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
**
17393528 GCGCATCCCGTCTCTCTAACCGACGTAGTGCCCGCCCGCCCGCTCG-C-TCGTTTCGTCGGTTGG
649 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-TCGCCATCGTTTCGTCGGTTGG
17393591 CTTAG
713 CTTAG
* * * * * **
17393596 GCATACGGAGTTCAATCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCTACAGCACATGCTGGG
* * * * ** * *
17393661 CTCGGGCAT-TGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCTTCGGAG
66 CTCGAGCATGTGCTGGTGTCACGTTTTTCTTCACCGGGGCACCATCGCT-AGAGCATCGTCGGAG
* ** * * * * *
17393724 AACCTGACCGAAGGCATTAAGGTTCCGACGATCGGGGGGGC-CGGG-GGGTGTGCGCACATGATG
130 AACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGCGCGAGGGCGGGTGTGCGCACATGATG
* * *
17393787 TG-TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACT
195 TGCT-ATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
17393851 CGCACCACC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTA
259 CACACC-CCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* **
17393915 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-GATTTTTTAGCTGAATTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCGAGCTTTTAGCTGAATTT
* * * *
17393979 TTTTGTGCCTGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAAC-CCTTCC
387 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTTC
* * * *
17394043 AAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
451 GAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
*
17394108 CGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
516 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
17394173 ATGGCATTGGCATGCAGAAATGTGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGG
581 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
17394238 CTTGCGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCAG-C-CCACTCGTTTCGTCGA
646 CTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGTCGCCA-TCGTTTCGTCGG
17394300 TTGGCTTAG
709 TTGGCTTAG
* * ** * *
17394309 CCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCAAGGGTTGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC
17394358 GGCAGCAGGT
Statistics
Matches: 5643, Mismatches: 641, Indels: 752
0.80 0.09 0.11
Matches are distributed among these distances:
690 2 0.00
691 13 0.00
692 1 0.00
693 65 0.01
694 7 0.00
702 42 0.01
703 1 0.00
704 40 0.01
705 19 0.00
706 231 0.04
707 60 0.01
708 20 0.00
709 72 0.01
710 26 0.00
711 58 0.01
712 351 0.06
713 623 0.11
714 232 0.04
715 115 0.02
716 46 0.01
717 11 0.00
718 2 0.00
719 231 0.04
720 114 0.02
721 211 0.04
722 1052 0.19
723 317 0.06
724 67 0.01
725 102 0.02
726 52 0.01
727 56 0.01
728 93 0.02
729 57 0.01
730 22 0.00
731 104 0.02
732 130 0.02
733 197 0.03
734 15 0.00
735 1 0.00
736 6 0.00
737 2 0.00
738 1 0.00
739 5 0.00
740 9 0.00
741 1 0.00
742 1 0.00
743 12 0.00
744 1 0.00
745 5 0.00
746 11 0.00
747 19 0.00
748 15 0.00
749 17 0.00
750 2 0.00
751 5 0.00
752 6 0.00
753 1 0.00
754 1 0.00
757 11 0.00
758 1 0.00
759 2 0.00
760 5 0.00
761 2 0.00
763 4 0.00
764 10 0.00
765 4 0.00
766 3 0.00
769 8 0.00
770 4 0.00
771 1 0.00
772 4 0.00
773 6 0.00
774 10 0.00
775 3 0.00
776 5 0.00
778 5 0.00
780 3 0.00
781 7 0.00
782 5 0.00
784 10 0.00
785 4 0.00
787 8 0.00
788 4 0.00
790 4 0.00
791 1 0.00
793 1 0.00
794 6 0.00
795 1 0.00
796 4 0.00
797 7 0.00
798 1 0.00
799 8 0.00
800 5 0.00
802 6 0.00
803 7 0.00
804 3 0.00
806 5 0.00
808 7 0.00
809 3 0.00
810 2 0.00
811 11 0.00
812 1 0.00
813 3 0.00
814 4 0.00
815 1 0.00
816 7 0.00
818 3 0.00
819 4 0.00
820 3 0.00
821 10 0.00
822 1 0.00
824 2 0.00
825 7 0.00
826 3 0.00
827 2 0.00
828 7 0.00
831 7 0.00
832 4 0.00
833 4 0.00
834 20 0.00
835 16 0.00
836 19 0.00
837 10 0.00
838 4 0.00
840 20 0.00
841 2 0.00
842 1 0.00
843 8 0.00
844 7 0.00
845 3 0.00
846 5 0.00
847 8 0.00
848 5 0.00
849 17 0.00
850 9 0.00
851 11 0.00
852 3 0.00
853 2 0.00
856 1 0.00
857 1 0.00
858 1 0.00
859 5 0.00
860 2 0.00
861 1 0.00
862 1 0.00
863 2 0.00
865 2 0.00
866 13 0.00
867 43 0.01
868 1 0.00
869 2 0.00
870 1 0.00
871 134 0.02
872 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCTACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGTCACGTTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGTCGGAGA
ACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGCGCGAGGGCGGGTGTGCGCACATGATGT
GCTATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTGAATTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
AATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCGCCATCGTTTCGTCGGTTGGCTT
AG
Found at i:17395378 original size:26 final size:26
Alignment explanation
Indices: 17395342--17395394 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17395332 GTTGACTTAG
*
17395342 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
17395368 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17395394 G
1 G
17395395 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17396279 original size:26 final size:26
Alignment explanation
Indices: 17396243--17396293 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17396233 TGACTTAGGT
17396243 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
* *
17396269 ATACGGAGTTCGTTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17396294 ATTAGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:17396680 original size:897 final size:895
Alignment explanation
Indices: 17393596--17402599 Score: 11480
Period size: 900 Copynumber: 10.1 Consensus size: 895
17393586 GTTGGCTTAG
* * ** *
17393596 GCATACGGAGTTCAATCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
* * * **
17393661 CTCGGGCAT-TGTTGGTGCCACATTTTTCTTC-GTCGGGGCACCATCGTCGGAGCATCTTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCGT-GGAGCATCGCCGGAG
* * ** *
17393724 AACCTGACCGAAGGCATTAAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGACATTGGGGTT-CGACGATC-GGGAGGCCGGGGGGTGTGCGCACATGATGTG
* * *
17393789 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCGC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
17393854 ACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17393919 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
17393984 TGCCTGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAACCCTTCCAAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * *
17394049 ATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
452 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
17394114 GCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * *
17394179 TTGGCATGCAGAAATGTGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
17394244 CATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCAGCCCACTCGTTTCGTCGATTGGCTTAG
647 CATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * *
17394309 CCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCAAGGGTTGCGGCAGCAGG-TTCGAC
712 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATT-G-C
** * * * *
17394373 AGCACGTAGAGGGGGACTCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCG
775 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
17394438 CCCGCACGCTCGTTTCAT-GG--G---T-----T---GA---C-TT---AG-----
840 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** *
17394468 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
** **
17394533 CTCGGGCATGTGCTGGTGCCGCATTTTTCTT-TGTCGGGGCACCATCGTCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCGT-GGAGCATCGCCGGAG
* * * * * * *
17394597 AACCCGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTATCCACACATGATGT
129 AACCTGACCGACGACATTGGGGTT-CGACGATC-GGGAGGCC-GGGGGGTGTGCGCACATGATGT
* *
17394662 TCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
17394727 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17394792 TTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
17394857 GTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * *
17394922 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCATCT
451 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
17394987 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
***
17395052 ATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
17395117 GCATCTCGTCTCTCTAGCCGGCGTAGCGCCAGCCCGCCTGCCCGCTAGTTTCGTCGGTTGGCTTA
646 GCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
17395182 GGCATACGGAGTTCATTCCTAGTGTAAGATCAGACCAGACTGAGGGTTACGGTAGTAGGATCGGT
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT-TGC
* * * * *
17395247 AGCACATAGAGGGGGACCC-AGTCGATCCCCGGTTTACGCATCCCGCCCCTCTGGCCTGCTGAGC
775 AGCACACAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
17395311 GCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
839 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** *
17395368 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
* * * * *
17395433 CTCAGGCATGTGCTGGTGTCGCCTTTTTCTTCACCGGCGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGT-GGAGCATCGCCGGAGA
* * *
17395498 ACCTGATCGACGACATTGGGGTTCTGACAATCAGGG-GGCCGGGAGGGGTGTACGCACATGATGT
130 ACCTGACCGACGACATTGGGGTTC-GACGATC-GGGAGGCC-GG-GGGGTGTGCGCACATGATGT
*
17395562 GCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
17395627 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
17395692 TGGGGACACTTTCTTCAAACGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
17395757 CTGCAAGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * *
17395822 AATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCT
451 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
17395887 TGCCATGAAACTTTACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGG
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGG
* ** * * *
17395952 AATTGGCAGGTAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTG
580 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
17396017 TGCATCTCGTCTCTCTAGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
645 CGCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
17396082 AGGCATACGGAGTTCATTCCTAGTCTAAGAT-AGGACCAG-CCGAGGGTTGCAGTAGCAAGATTG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGCGGCAGCAGGATTG
* ** ** ** * ** * * *
17396145 GAGCACGTAGAGGGGGACTTGGTCGATCCTCGATTTGCGTAACCCACCCCTCTGGCCGGCTGAGC
774 CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
17396210 GCCCGCACGTTCATTTCTTTGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCTAA
839 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** * **
17396267 GCATACGGAGTTCGTTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGTGCCAGCACATATTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
* * * *
17396332 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGTGAACCATCGCTGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCG-TGGAGCATCGCCGGAGA
* * * *
17396397 ACCTGATCGACAACATTGGGGTTCGACAATCGGGAAGGCCGGGGGGTGTGCGCACATGATGTGAG
130 ACCTGACCGACGACATTGGGGTTCGACGATCGGG-AGGCCGGGGGGTGTGCGCACATGATGTGCG
17396462 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
17396527 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
17396592 GGACACTTTTTTCTAATGGTCATAAAATCTTGTGCACTTCGAGTTTTTAGGTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * *
17396657 CACGCCAACAAAAATACAAGGATCACGTCCACCATGTTTGGGGCCGAAACTCCTTCTGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
* *
17396722 TTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
17396787 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
17396852 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
584 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
17396917 TCTCGTCCCTCTGGCCGGCGTAGTGCTTGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGC
649 TCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** * * * * *
17396982 ATACAGAGTTTATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTACGGCAGCAAGATTGATAGC
714 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTG-CAGC
* * * *
17397047 ACACAGAGGGGGACCCGACCGATCCCCGGGTTGAGCATCCCACCCCTCTGGCCGGCTGAGCACCC
778 ACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
17397112 GTACACTCGTTTCATGGGTTGACCTAGGCATACAGAGTTCGTTCCCAGTCTAA
843 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
17397165 GCATACGGAGTTCA-TCCCAGTCTAAGATCGGACCATACCGAGGGTTGCGGCCA-CACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-TGCCAGCACATGCTGG
* * * ** ** *
17397228 GCTCGAGCATGTACTGGTGTCAAATTTTTCTTCGTTGGGGCACCATCGTTGGAGCATCGCCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCG-TGGAGCATCGCCGGAG
* * * * *
17397293 AACCTGA-CGAAGGCATTGGGGTTCGACGATCGGAAAGGCTGGGGGGTGTGCGCACATGATGTGA
129 AACCTGACCGACGACATTGGGGTTCGACGATCGG-GAGGCCGGGGGGTGTGCGCACATGATGTGC
*
17397357 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
17397422 CTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAATGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
17397487 GGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTTTT
* * * * *
17397552 TTGCATGCCAACAAGAATACAAGGATCACGTCTAACAACTTTGGGGCC-AAATTCCTTCCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * * *
17397616 AATTTAAAAAAATCCCAAACCGCTAAAAAGTTTCAAAAATCTTAAAAAAAAGAAAACGAGTCATC
451 AATTTTAAAAAATCCCAAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
17397681 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGA
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
17397746 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
580 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
17397811 TGCATCTCGTCTCTCTGGCCGGCGTAGTGCTTGCCCGCCCACCCGCTCGTTTCCTCAGTTGGCTT
645 CGCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * * * *
17397876 AGGCATACGGAGTTTATTTCCAGTCTAAGATTGGATCAGATCGAGGGTTACGGCAGCAAGATTGA
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTG-
* * * *
17397941 CAACACACAGAGGGGGACCCGACCGATCCCCGGGTTGAGCATCCCACCCCTC-GGCCGGCTGAGC
774 CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
17398005 GCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCGTTCCCAGTCTAA
839 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
17398062 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCCA-CACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-TGCCAGCACATGCTGG
* * * * * * *
17398126 GCTAGAGCATGTACTGGTGTCGAATTTTTCTTC-GTCGGGGCACCATCATTGGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATC-GTGGAGCATCGCCGGA
17398190 GAACCTGACCGACGACATTGGGGTTCCGACGATCGGGAAGGCCGGGGGGTGTGCGCACATGATGT
128 GAACCTGACCGACGACATTGGGGTT-CGACGATCGGG-AGGCCGGGGGGTGTGCGCACATGATGT
* *
17398255 GAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
17398320 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
17398385 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
17398449 TTGCATGCCAACAAGAATACAAGGATCACGTCTAACAACTTTGGGGCCAAAATTCCTTCCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * *
17398514 AATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
17398579 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17398644 ATTGGCACATAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
581 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
17398709 GCATCTCGTCTCTCTGGCCGGCGTAGTGCTTGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTA
646 GCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** * * * * *
17398774 GGCATACGGAGTTTATTCCCAGTCTAAGATTGGATCAGATCGAGCGTTACGGCAGCAAGATTGAC
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTG-C
* * * * *
17398839 AACACACAGAGGGGGACCCGACCGATCCCCGGGTTGAGCATCCCACCCCTCTGGCCGACTGAGCG
775 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
17398904 CTCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCGTTCCCAGTCTAA
840 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
17398960 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCCA-CACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-TGCCAGCACATGCTGG
* * * * * * *
17399024 GCTCGAGCATGTACTGGTGTCGAATTTTTCTTC-GTCGGGGCACCATCATTGGAGCATCGCCAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATC-GTGGAGCATCGCCGGA
* *
17399088 GAACCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
128 GAACCTGACCGACGACATTGGGG-TTCGACGATC-GGGAGGCC-GGGGGGTGTGCGCACATGATG
* * **
17399153 TGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCTTCATCAAACCTTGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
17399218 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTGCTGCCAGTAGGCATTAAATTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
17399283 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
17399348 TGTGCATGCCAACAAGAATACAAGGATCACGTCTAACAACTTTGGGGCCAAAATTCCTTCCGAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * ** *
17399413 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
450 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
17399478 TTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
17399543 CATTGGCATAGAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCACGGCTTG
580 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * *
17399608 CGCATCCCGTTTCTCTGGTAGGCGTA--G--TGCCAGCCCACCCGCTCGTTTCGTCAGTTGGCTT
645 CGCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** *
17399669 AGGCATATGGAGTTCATT-CCAGTCTAAGATCAGATCAGACCGAGGGTTGTAGCAGCAGGATCGA
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTG-
* * * * *
17399733 TAGCACGCAGAGGGGGACCAGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGTTGAGC
774 CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
17399798 GCTCGCACTCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCC--TGT--
839 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * ** *
17399851 -C-TA---AG---A-T--CAG----A-A-CGGA-CAG---G-GTGCTGTAG-TGGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGT-GCCAGCACATGCTGG
* * * * * * * * *
17399893 GCTCGGGCAGGGGCTGGTGCTGCAATTTTCTTCACCGTGGGTACCATCATCGGAGTATCACCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTG-GGGCACCATCGT-GGAGCATCGCCGGA
* * * *
17399958 GAACCTGACCGGC-AGCATT-GGGTTCTA--A-C--GA--TC---GGGTGTGCGCACATGATTTG
128 GAACCTGACCGACGA-CATTGGGGTTCGACGATCGGGAGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
17400011 TGATGGGTGCTGGTACTTGTCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCGC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
17400076 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCACTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17400140 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
17400205 TGCATGCCAACAAAATTACAAGCATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTTC-AAAAT
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA-
** * * *
17400269 TTTTTTTAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
17400334 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
17400399 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAATCACCCTATCGATCCACGGCTTGC
581 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** *
17400464 GCATCCCGTCTCTCTGGCAGTTGTAGTGCCCGCCTGCCCTCCTGCCCGCCCGCTCGTTTCATCGG
646 GCATCTCGTCTCTCTGGCCGGCGTAGT----GCCTG--C-CC-GCCCGCCCGCTCGTTTCGTCGG
* * * * * * *
17400529 TTAGCTTAGACATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTAGTA
703 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* ** * * *
17400594 GGATCAGCAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTTTGGCCG
768 GGAT-TGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * **
17400659 ACTGAGTGCCCACACGCTCATTTCGTAAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
832 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
17400723 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
* * * *
17400788 CTCGGGCATGCGCTGGTGTCGTATTTTTCTTC-GTCGGGGCA-C--C-----G--TCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCGTGGAGCATCGCCGGAGA
* * * **
17400842 ACCTGTCTGGCGGTATTGGGGTTC--CGA-C--GA--CCGGGGGGTGTGCGCACATGATGTGCGA
130 ACCTGACCGACGACATTGGGGTTCGACGATCGGGAGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
17400900 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTAT-CCTCATCAAACCTCGAGAACT-AGCAC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA-CAC
* * ** *
17400963 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAATAGTTACTAAAGTGTCT-AACATG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA-ATG
* *
17401027 GGGGCACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
17401092 GCAAGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * * *
17401157 TTTTAAAAGATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTG
453 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
17401222 CCATGAAACTTCACTTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * *
17401287 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACTACCATATCAATCCTCGGCTTGCGC
583 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
17401352 ATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGTTTGGCTTAGG
648 ATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
17401417 CATACGGAATTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCAGCAG
713 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT-TGCAG
* * * * *
17401482 CACGCAGAGGGGGACCC-AGCCGATCCCCGACTTACACATCCCGCCCTTCTGGCCGGCTGAGCGC
777 CACACAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
17401546 CCACACGCTTGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
841 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
17401601 CCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCACTTGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
* * * * * *
17401666 ATCGGGCATGTG-TCGGTGCTGTATTTTTCCTCA-TCAGGGCACCATC-----G--T---CGGAC
66 CTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCACT-GGGGCACCATCGTGGAGCATCGCCGGAG
* * * * * *
17401719 AACCTTACCGGCAACATTGGGGTTCTGACGTTCGGGGGGCCGGGGGGGTGTGCACACATGATGTG
129 AACCTGACCGACGACATTGGGGTTC-GACGATCGGGAGGCC-GGGGGGTGTGCGCACATGATGTG
* *
17401784 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
17401849 ACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17401914 GGGGACACTTTTTTCTAATGGTCATAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
17401979 TGCATGCCAACAAAAATACAAGGATCA--TGTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * **
17402042 ATTTTAAAAAATTCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
17402107 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
17402172 TTGGCATGA-AGAAATATGAAGATGTGACTAAACCCACCTACGACCCTATCGATCCACGGCTTAC
582 TTGGCA-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
17402236 GCAACCCGTCTCTCTGACCGACGTAGTGGCC-ACCCGCCCGCCCGCTCATTTCGTTGCTTGGCTT
646 GCATCTCGTCTCTCTGGCCGGCGTAGT-GCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
17402300 AGGCATACAGAGTTCATTCCCAGTCTAAGGTCAGATC-GAACTGACGGTTGTGGCAGCAGGATTG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATT-
* * ** * * * * * *
17402364 GCAGCACCCAGAAGGGGATGCGGCCAATCCCCGACTTGCGTATCCTGCCCCTCTGGCCGGCTTAG
773 GCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
17402429 CACCCGCACGCTCATTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCCAGTCTAA
838 CGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * * *
17402488 GCATATGGAGTTCATTCCCAGTCTCAGATCAGATCGGACCGAGGTTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
* *
17402553 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCG
17402600 CTGGCTTTCG
Statistics
Matches: 7290, Mismatches: 694, Indels: 280
0.88 0.08 0.03
Matches are distributed among these distances:
854 4 0.00
855 373 0.05
856 77 0.01
860 1 0.00
861 1 0.00
862 1 0.00
863 2 0.00
865 2 0.00
866 2 0.00
867 40 0.01
868 139 0.02
869 46 0.01
870 39 0.01
872 72 0.01
873 92 0.01
874 626 0.09
875 5 0.00
876 1 0.00
877 5 0.00
878 300 0.04
879 3 0.00
880 6 0.00
881 6 0.00
882 27 0.00
883 15 0.00
884 2 0.00
885 26 0.00
886 799 0.11
887 199 0.03
888 167 0.02
889 9 0.00
890 4 0.00
891 1 0.00
892 3 0.00
893 8 0.00
894 42 0.01
895 140 0.02
896 430 0.06
897 1017 0.14
898 892 0.12
899 473 0.06
900 1036 0.14
901 157 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGTGGAGCATCGCCGGAGAA
CCTGACCGACGACATTGGGGTTCGACGATCGGGAGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
TCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTGCAGCACA
CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:17397188 original size:25 final size:26
Alignment explanation
Indices: 17397139--17397190 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17397129 GTTGACCTAG
*
17397139 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCGATCCCAGTCTAA
*
17397165 GCATACGGAGTTC-ATCCCAGTCTAA
1 GCATACAGAGTTCGATCCCAGTCTAA
17397190 G
1 G
17397191 ATCGGACCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCGATCCCAGTCTAA
Found at i:17398072 original size:26 final size:26
Alignment explanation
Indices: 17398036--17398088 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17398026 GTTGACTTAG
*
17398036 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17398062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17398088 G
1 G
17398089 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17398970 original size:26 final size:26
Alignment explanation
Indices: 17398934--17398986 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17398924 GTTGACTTAG
*
17398934 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17398960 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17398986 G
1 G
17398987 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17400733 original size:26 final size:26
Alignment explanation
Indices: 17400697--17400749 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17400687 GTTGACTTAG
17400697 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17400723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17400749 G
1 G
17400750 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17401764 original size:886 final size:875
Alignment explanation
Indices: 17399991--17402600 Score: 3519
Period size: 886 Copynumber: 3.0 Consensus size: 875
17399981 TCTAACGATC
* * * *
17399991 GGGTGTGCGCACATGATTTGTGATGGGTGCTGGTACTTGTCCTTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTC
* * *
17400056 ATCAAACCTCAAGAACTCGCA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTA
65 ATCAAACCTCGAGAACTAGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
17400120 GCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
130 GCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
17400185 TTTTTAGCTGAATTCTTTTGTGCATGCCAA-CAAAATTACAAGCATCACGTCTACCAAG-TTTGG
195 TTTTTAGCTGAATTTTTTTGTGCATGCCAACCAAAA-TACAAGGATCACGTCTACCAAGTTTTGG
** *
17400248 GCCCAAAAATCCTTTC-AAAATTTTTTTTAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATG
259 G-CCAAAAATCCTTTCGAAAA--AATTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
17400312 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
321 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
17400377 ATTTACAAGCCATAAAAATGGCATTGGCA-CACAGAAATATGAAGATGTGCCTAAACCCACC-AA
386 ATTTACAAGCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTGCCTAAACCCACCTAC
* **
17400440 TCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGTTGTAGTGCCCGCCTGCCCTC
450 T-ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-G--C-C
* * * *
17400505 CTGCCCGCCCGCTCGTTTCATCGGTTAGCTTAGACATACGAAGTTCATTCCCAGTCTAAGATCAG
507 C-GCCCGCCCGCTCGTTTCGTCGCTTGGCTTAGGCATACGAA-TTCATTCCCAGTCTAAGATCAG
* ** * * *
17400570 ACCAGATCGAGGGTTGCAGTAGTAGGATCAGCAGCATGCAGAGGGGGACCCGACCGATCCCTGGC
570 ACCAGACCGAGGGTTGTGGTAGTAGGATCAGCAGCACGCAGAGGGGGACCCG-CCGATCCCCGAC
* * * **
17400635 TTGCGCATCCTGCCCCTT-TGGCCGACTGAGTGCCCACACGCTCATTTCGTAAGTTGACTTAGGC
634 TTGCGCATCCTG-CCCTTCTGGCCGGCTGAGCGCCCACACGCT-TTTTCGTGGGTTGACTTAGGC
*
17400699 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCG
697 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* *
17400764 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGCGCTGGTG-TCGTATTTTTCTTCGTCGGGGC
762 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GTATTTTTCTTCATCGGGGC
* * * ***
17400828 ACCGTCGCCGGAGAACCTGTCTGGCGGTATTGGGGTTCCGACGACC-GGG
826 ACCATCGCCGGACAACCTGTCCGGCAACATTGGGGTTCCGACGACCGGGG
17400877 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTAT-CCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTC
* *
17400941 ATCAAACCTCGAGAACTAGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAATA
65 ATCAAACCTCGAGAACTAGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
** * *
17401006 GTTACTAAAGTGTCT-AACATGGGGGCACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGA
130 GCCACTAAAGTGTCTGAA-ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
17401070 GTTTTTAGCTGAATTTTTTTGTGCAAGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTTGG
194 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTTGG
* * *
17401135 GCCAAAACTCCTTCCGAAAAAATTTTAAAAGATCTCGAACCGCAAAAAGTTTCAAAAATCATGAA
259 GCCAAAAATCCTTTCGAAAAAATTTTAAAA-ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
* * *
17401200 AAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTATATGAAT
323 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
17401265 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACTAC
388 TTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACTAC
* * * * *
17401330 CATATCAATCCTCGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGC
453 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC
* * *
17401395 TTGTTTCGTCGTTTGGCTTAGGCATACGGAATTCATTCCCAATCTAAGATCAGACCAGACCGAGG
518 TCGTTTCGTCGCTTGGCTTAGGCATAC-GAATTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * *
17401460 GTTGTGGTAGTAGGATCAGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTACACATCCCG
582 GTTGTGGTAGTAGGATCAGCAGCACGCAGAGGGGGACCC-GCCGATCCCCGACTTGCGCATCCTG
*
17401525 CCCTTCTGGCCGGCTGAGCGCCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACAAAGTTCAT
646 CCCTTCTGGCCGGCTGAGCGCCCACACGCTT-TTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
* * * * *
17401590 TCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAG
710 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAG
* ** * * *
17401655 CACTTGCTGGAATCGGGCATGTG-TCGGTGCTGTATTTTTCCTCATCAGGGCACCATCGTCGGAC
775 CACATGCTGGGCTCGGGCATGTGCT-GGTGCTGTATTTTTCTTCATCGGGGCACCATCGCCGGAC
* *
17401719 AACCT-TACCGGCAACATTGGGGTTCTGACGTTCGGGGGGCCGGGG
839 AACCTGT-CCGGCAACATTGGGGTTC---CG-AC----GACCGGGG
*
17401764 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTC
*
17401829 ATCAAACCTCGAGAACTCA-CACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGT
65 ATCAAACCTCGAGAACT-AGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
17401893 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGGTCATAAAATCTTGTACACTTTGA
129 AGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
17401958 GTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA--TGTACCAAGTTTGGG
194 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTTGG
*
17402021 GCCAAAAATCCTTTCGAAAAAATTTTAAAAAAT-TCCGAACCATAAAAAGTTTCAAAAATCATGA
259 GCCAAAAATCCTTTCGAAAAAATTTT-AAAAATCT-CGAACCGTAAAAAGTTTCAAAAATCATGA
*
17402085 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAA
322 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
17402150 TTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGACTAAACCCACCTACGA
387 TTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACTA
* * * * *
17402215 CCCTATCGATCCACGGCTTACGCAACCCGTCTCTCTGACCGACGTAGTGGCCACCCGCCCGCCCG
452 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * * * *
17402280 CTCATTTCGTTGCTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGGTCAGATC-GAACTGA
517 CTCGTTTCGTCGCTTGGCTTAGGCATAC-GAATTCATTCCCAGTCTAAGATCAGACCAG-ACCGA
* * * ** * * * * * *
17402344 CGGTTGTGGCAGCAGGATTGGCAGCACCCAGAAGGGGATGCGGCCAATCCCCGACTTGCGTATCC
580 GGGTTGTGGTAGTAGGATCAGCAGCACGCAGAGGGGGA-CCCGCCGATCCCCGACTTGCGCATCC
* * * *
17402409 TGCCCCTCTGGCCGGCTTAGCACCCGCACGCTCATTTTCGTGGGTTGACTTAGGCATACAGAGTT
644 TGCCCTTCTGGCCGGCTGAGCGCCCACACGCT--TTTTCGTGGGTTGACTTAGGCATACAGAGTT
* * * * * *
17402474 CATTTCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTCAGATCAGATCGGACCGAGGTTTGCGA
707 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
*** *
17402539 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGC
772 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCACCATCGC
17402601 TGGCTTTCGC
Statistics
Matches: 1523, Mismatches: 165, Indels: 71
0.87 0.09 0.04
Matches are distributed among these distances:
877 7 0.00
878 299 0.20
879 7 0.00
880 1 0.00
881 2 0.00
882 2 0.00
883 2 0.00
884 1 0.00
885 39 0.03
886 779 0.51
887 213 0.14
888 168 0.11
889 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (875 bp):
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCA
TCAAACCTCGAGAACTAGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTTGGGC
CAAAAATCCTTTCGAAAAAATTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG
TTTCGTCGCTTGGCTTAGGCATACGAATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
TGGTAGTAGGATCAGCAGCACGCAGAGGGGGACCCGCCGATCCCCGACTTGCGCATCCTGCCCTT
CTGGCCGGCTGAGCGCCCACACGCTTTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCACCATCGCCGGACAACCTGT
CCGGCAACATTGGGGTTCCGACGACCGGGG
Found at i:17402764 original size:205 final size:206
Alignment explanation
Indices: 17402411--17402798 Score: 589
Period size: 205 Copynumber: 1.9 Consensus size: 206
17402401 GCGTATCCTG
* *
17402411 CCCCTCTGGCCGGCTTAGCACCCGCACGCTCATTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
1 CCCCTCTGGCCGGCTGAGCACCCGCACGCTCAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* * ** *
17402476 TTTCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTCAGATCAGATCGGACCGAGGTTTGCGACA
66 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGTTGCGACA
* *
17402541 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCTGGCT
131 GCACAGGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACAGGGGCACCATCGCTGGCT
17402606 TTCGCATCCCA
196 TTCGCATCCCA
* ** *
17402617 CCCCTCTGGCTGGCTGAGTGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 CCCCTCTGGCCGGCTGAGCACCCGCACGCTCAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* * **
17402681 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGATTGGACCGAGGGTTGCGGTA
66 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGTTGCGACA
* **
17402746 GCACAGGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACAGGGGCA
131 GCACAGGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACAGGGGCA
17402799 TGATCACCGG
Statistics
Matches: 162, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
205 135 0.83
206 27 0.17
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.27
Consensus pattern (206 bp):
CCCCTCTGGCCGGCTGAGCACCCGCACGCTCAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGTTGCGACA
GCACAGGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACAGGGGCACCATCGCTGGCT
TTCGCATCCCA
Found at i:17403594 original size:26 final size:26
Alignment explanation
Indices: 17403565--17403617 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17403555 GTTAACTTAG
*
17403565 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
17403591 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17403617 G
1 G
17403618 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17407942 original size:26 final size:26
Alignment explanation
Indices: 17407906--17407958 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17407896 GTTGACTTAG
*
17407906 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17407932 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17407958 G
1 G
17407959 AACAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17408832 original size:26 final size:26
Alignment explanation
Indices: 17408796--17408848 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17408786 GTTGACTTAG
*
17408796 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17408822 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17408848 G
1 G
17408849 AACAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17408908 original size:890 final size:891
Alignment explanation
Indices: 17407187--17416643 Score: 11586
Period size: 890 Copynumber: 10.7 Consensus size: 891
17407177 GGGGTTTCAG
* * *
17407187 CGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTAGCCCTTATA
1 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
17407252 TTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
66 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
17407317 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAA
131 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
17407382 ATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
196 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
17407447 GTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTAAAAAAATTCTGAACCGCAAAAAG
261 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
* * *
17407512 TTTCGAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
326 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
17407577 GGACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACC
391 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * * *
17407642 CAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGTCTCTATGGCCGACGTAGTGC
456 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * *
17407707 CCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTGT
521 CCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
17407772 AATACCAGATCGGACCAAGGGTT-CCATAGTAGGATCGGCAGCATGCAGAAGGGGACCCGATCGA
586 AAGATCGGATCAGACCAAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATCGA
* * * * * * *
17407836 TCCCCGATTTACGCATCCCGTCCCTCTGGGCGACTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGA
651 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
*
17407901 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAACAGAC
716 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGAACGGAC
* * *
17407966 CGGACCGAAGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGT
780 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCAT
* * *
17408031 CGGGGCACCATCACCGGAGAACCCGACCGACGGCTTTGGGGTTCCTA
845 CGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * *
17408078 TGATCGGGGGGGCCGGGGGGTGTGCGGACAAGATGTGCGATGGGTGCTGCTACTTGGCCCTTATA
1 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
17408143 TTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTG
66 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
17408208 CAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAA
131 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
17408273 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
196 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
17408338 GT-TACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATTCCGAACCGCAGAAAG
261 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
* * *
17408402 TTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAATGCTTAAG
326 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
17408467 GGACCATTGTATGAATTTTCTAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
391 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
17408532 CAAACCCACCTAACACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGC
456 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * * * * *
17408597 CCGCCCGCCCACCCACCTGTTCATTTCATTGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCT
521 CCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
17408662 AAGATCGGATCAGAACGAGGGTT-CCACAGTAGGATCGGCAGCACGCAGAAGGGGACCCGATCGA
586 AAGATCGGATCAGACCAAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATCGA
* * * * *
17408726 TCCCCGATTTACGCATCCCGCCCCTGTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGA
651 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
*
17408791 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAACAGAC
716 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGAACGGAC
* * *
17408856 CGGACCGAAGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGT
780 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCAT
* * *
17408921 CGGGGCACCATCACCGGAGAACCCGACCGACGGCTTTGGGGTTCCTA
845 CGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * *
17408968 TGATCGGGGGGGCCGGGGGGTGTGCGGACAAGATGTGCGATGGGTGCTGCTACTTGGCCCTTATA
1 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
17409033 TTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTG
66 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
17409098 CAGGTTTGCTGCCAGTAGCCATTAAAGTTTCCTGAAATGAGGACACTTTTTTCAAATGGTCACAA
131 CAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
17409163 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAGTACAAGGATCA
195 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * **
17409228 TGTCTACCAAGTTAGAGGCC-AAAATGCCTTCCAAAAAAATTTTAAAAAATCCCGAACCTTAAAA
260 CGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAA
*
17409292 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
324 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
17409357 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTG
389 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* *
17409422 CCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAGT
454 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * ** * *
17409487 ----GCCCGCTCGCCTGCCCGTTTTTTTCATCGATCGGCTTAGGCATACGGAGTTCATTCCCAGT
519 GCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * *** * * * ** **
17409548 CTAAGATCGGACCGGATTGAGGATTGCAACAACAGGATCGGCAGCACGTTG-AGCCTGACCCGAT
584 CTAAGATCGGATCAGACCAAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAAG-GGGACCCGAT
* * *
17409612 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTGAGCGCCCGCACGTTCGTTTCATGGGT
648 CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * * *
17409677 TGAGTTAGGCATACAGAGTTCGTTCCCAGTCTAAGCATACGAAG-TCATTCCCAATCTAAGATCG
713 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGAACG
* * * * * * *
17409741 GACCGGATCAAGGGTTACGGTAGCACATGCTAGGCTCGAGCATGTTCTGGTGCCGTATTTTTCTT
777 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
* * * * *
17409806 CGTCAGGGCACCATCACCGGAGAACCTGACGGACGGCGTTGGGGCTCCGA
842 CATCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * *
17409856 TGATTGGGGGGGCCGGGGGGAGTGTGCGCACATGATGTCCGATGGGTGCTGTTACTT-GCCCTTA
1 CGATCGGGGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
17409920 TATTGGCCTCCTATCCCTCATCAGACCTCGAGAACTCACACCCCCTT-AA-AG----TGACATTT
64 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
17409979 TACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACA
129 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * * *
17410044 AAATGTTGTACACTTCAAGTTTTTAGCTGAATTTGTTTGTGGATGCCAAAAAAAATACAAGGATC
194 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* ** * * * ** *
17410109 ACGTTTACCAAGTTTGGGGGTAAAACTCCTTCCGAAAAAATTTAAAAAAATCTTGAACCGTAAAA
259 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAA
17410174 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
324 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
17410239 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGCGTAGAAATATGAAGATGTG
389 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* * * *
17410304 CCTAAACCCACCTACCAGCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTAGCCGACGTAGT
454 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * *
17410369 GCCCGCCCG---TCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGT
519 GCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * *
17410431 CTAAGATCGGA-CTGGACCAAAGGTTGCGGCAACAGGATCTGCAACACACA-AAGGGGGACCCGG
584 CTAAGATCGGATC-AGACCAAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAA-GGGGACCCGA
* * *
17410494 TCGATCCCC-AGCTTGCGCAACCCGCCCCTCTGGTCGGCTGAGCGCTCGCACGCTCGTTTCATGG
647 TCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* * * * * *
17410558 GTTAACTT-GGCATACGAAGTTCATTTCCTGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
711 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGAA
* * * * *
17410622 CGGACCAGAGCGAGGGTTGCGGCAGCACATGCTGGGCTCAGACATGTGCTGGTGCCACT-TTTTT
775 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GTATTTTT
* * *
17410686 CTTCACCGGGACACCATCGCCAGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGA
839 CTTCATCGGG--------G-C--ACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
17410750 CGATCGGGGGGGCTGGGGGGGTGTGCGCACAT-ATGTGTGATGGGTGCTGGTACTTGGACCTTAT
1 CGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
17410814 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGAGCATGTGAGATTTT
65 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
17410879 ACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGCTCACAA
130 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * * *
17410944 AAACTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATATAAGGATCA
195 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * *
17411009 CGTCTTCCAAATTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAATATCCCAAACCG-TAAAA
260 CGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
*
17411073 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
325 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * * *
17411138 GGGAGCATTGTATGAATTCACAGGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGC
390 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * *
17411203 CTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATCTCATCTCTCTGGGCGGCGTAGTG
455 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * * * * ** **
17411268 CCCGCCTGTCCGTCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACACAGTTCATTCCCAACC
520 CCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * * * * *
17411333 TAAGATCAGG-TCGGATCGAGGGTTGTGGCAGCAGGATTGGTAGCATGCGGAGGGGGACCCGGTC
585 TAAGATC-GGATCAGACCAAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATC
* * * * * * *
17411397 AATCCCCGGCTTGCGCGTCCCACCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGGTA
649 GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
17411462 GACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--AG---------A---T-----CGGA
714 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGAACGGA
* * * *
17411502 CCGGACTGAGGGTTGCGGCAGCACATGCAGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCA
779 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCA
* *
17411567 TCGGGGCACCATCGTCGGAGGCTCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCAGA
844 TCGGGGCACCA---TC--A--C-CG--G-AGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
17411626 CGATC-GGGGGGCTAGGTGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTA
1 CGATCGGGGGGGC-CGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
17411690 TATTGGCCCCCTATCCTTCATCAAACCTCTAAAACTCACACCCCCTTAAAAAGCATTTGAGATTT
64 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
17411755 TACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
129 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
17411820 AAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAGAAGGATC
194 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
*
17411885 ACGTCTACCAAGTTTGGGGAC-AAAA--C-TCC---------TT------T--CG-A----AAAA
259 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* *
17411924 A---TC-----T--TGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTA
324 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
17411979 AGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG
389 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* * *
17412044 CCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATCTCGTCTCTCTGGGCGGCGTAGT
454 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * * *
17412109 GCCCGCCTGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGC
519 GCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * ** *
17412174 CTAAGATCAGG-CCAGACCAAGGGTTAC-AGTAGCAGGATCGGCAGCATGGGGAAGGGGACCCGG
584 CTAAGATC-GGATCAGACCAAGGGTTGCGA-CAGCAGGATCGGCAGCACGCAGAAGGGGACCCGA
* * * * * * *
17412237 TCGATCCCCGGCTTACGCGTCCC-ACCCTCTGGCCGGCTGAGCGCCCGCAAGCTCATTTCGTGGG
647 TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
17412301 TTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--AG---------A---T-----CG
712 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGAACG
* * * * *
17412341 GACCGGACTGAGGGTTGTGGCAGAACATGCTGGGCTCGAGCATGTGCTGGTGGCGTATTTTTCTT
777 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
* * *
17412406 CATCGCGGCACCATCGTCGGAGCCTCGCCGGAGAACCTGACCG-CGGCATTAGGGTTCCGG
842 CATCGGGGCACCA---TC--A------CCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
*
17412466 CGATC-GGGGGGCCGGGCGGGTTGTGCGGACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTA
1 CGATCGGGGGGGCCGGG-GGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
17412529 TACTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCTTTAAAAAGCATTTGAGATTT
64 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
17412594 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACA
129 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
17412659 AAATCTTGTACACATCGAGTTTTTAGCTGTATTGTTTTTGTGCATGCCAACAAAAATAGAACGAT
194 AAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * * * * * *
17412724 CACGTCTACTAAGTTTGGGGACAAAACTCCTTTCGAAAAAATCTTGAAAAATCCCAAACCACAAA
258 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAA
* * *
17412789 ACGTTTCAGAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
323 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
17412854 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
388 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * * * *
17412919 GCCTAAACCCACCTACCACCCTGTCGATCCACAGCTTGTGCATCCCGTCTCTCTAGCCGACGTAG
453 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * *
17412984 T----GCCCGCCCGCCCGTCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAG
518 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* ** ** * * * *
17413045 TCTCAGATCGGATTGGAGTGAA-GGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCTGA
583 TCTAAGATCGGATCAGA-CCAAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAAGGGGACCCGA
* * * * * * *
17413109 CCGATCTCC-AGCTTGCGCATCCCGCCCCTCTGGCCGACTGGGCACCCGCACGCTCATTTCGTGG
647 TCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* * * * *
17413173 GTTGACTTAGGCACATGGAGTTCATTCCCAGTCTAAACATACAGAGTTCATTCTCAATCTAAGAA
711 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGAA
** * * * *
17413238 CGGACTAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATCTGCTGGTGTC-TCATTTTT
775 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT-ATTTTT
* *
17413302 CTAT-GTCGGGGCACCATCGTCGGAGCATCGTTGGAGAACTTGACC-AGCGGCATTGGGGTTCCG
839 CT-TCATCGGGGCACCA---TC--A-C--C---GGAGAACCTGACCGA-CGGCATTGGGGTTCCG
17413365 A
891 A
* * * *
17413366 CGATCGAGGGGGCCGGCGGGGTGTGCACACATGATGTGCGATAGGTGCTGGTACTTGACCCTTAT
1 CGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
17413431 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
65 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
17413496 ACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACAA
130 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
17413561 AATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
195 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* **
17413626 CGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCATAAAAA
260 CGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
* * * *
17413691 TTTTTGAAAAA-CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
325 -GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
17413755 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCACGTAGAAATATGAAGATGTG
389 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* * * *
17413820 CCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTTTGGCAGGCGTAGT
454 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * *
17413885 GCCCGCCCGCCCGCTTGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCC
519 GCCCGCCCGCCCGC---CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * *
17413950 CAGTCTAAGATTGGACCAGACCAAGGGTT-CTGGCAGCAGGATCGACAGCATGCAGAGGGGGACT
580 CAGTCTAAGATCGGATCAGACCAAGGGTTGC-GACAGCAGGATCGGCAGCACGCAGAAGGGGACC
** * * * *
17414014 CGGCCGATCCCCGGCTTGCGCATCTCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCAT
644 CGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCA-
* * *
17414079 TGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTTATTCCTAGTCTAA
708 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAA
* * ** * **
17414144 GATCGGACTGGACCGAGGGTTTTGGCAGCACATGTTGGGCTCGGGCATGTGCTACTGCC-TCATT
772 GAACGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT-ATT
* * * *
17414208 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCGGTGGCATTGGGGTTCA
836 TTTCTTCATCGGGGCACCATCACCGGAG-A--ACC--TG-ACC-GA-C---GGCATTGGGGTTCC
*
17414273 AA
890 GA
* * * *
17414275 CGATCTGGGGGGTCAGGGGGGTGTGCGAACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTAT
1 CGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
17414340 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTT
65 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
17414405 ACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
130 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
17414470 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
195 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
** ** * * * * *
17414535 CGTCTAATAAGTTTGGGTTCAAAACTTCTAT-CGAAAAAATTTTAAAAAATCTCGAACCGTAAAA
260 CGTCTACCAAGTTTGGGGCCAAAAATCCT-TCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAA
** *
17414599 AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
324 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
17414664 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTAGGCAGAAATATGAAGATGTG
389 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* * * *** * *
17414729 CCTAAACCCACCTACCACCCTATCGAGCCACGGCTTCCGCATCCCGCCTCTCTAATCAGCGTCGT
454 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * *
17414794 GCCCGCTCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAT
519 GCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
17414859 CTAAGATCAGACCAGACCAAGGGTTGCGACAGTAGGATCGGCAAG-ATGCAG-AGCGGGACCCGG
584 CTAAGATCGGATCAGACCAAGGGTTGCGACAGCAGGATCGGC-AGCACGCAGAAG-GGGACCCGA
* * *
17414922 TCGATCTCC-AGCTTGCGCATTCCGCCCCTCTGGCCGGCTGA--GCCTGCACGCTCGTTTCATGG
647 TCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
*
17414984 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGAT
711 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGAA
* * * * **
17415049 CGGATCGGACCGAGGGTTTCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTC
775 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
* **
17415114 TCCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGA
840 TTCATCGGGGCACCA---T-----CA-C--CGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
17415177 CGATCGGGGGGACCGGGGGGTGTGCGTACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
1 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
17415242 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGTATTTGAGATTTTA
66 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
17415306 TAGGTTTGCTGTCAGTAGCCATTAAAGTG--TGAAATGGGGACACTTTTTTCAAGTGGTCACAAA
131 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
17415369 ATCTTGTACACTTTGAGTTTTTAGCTG-ATTTGTTTTGTGCATACCAACAAAAATACAAGGATCA
196 ATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCA
* ** ** * * *
17415433 CATCTAATAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAA
260 CGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
*
17415498 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAA
325 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * **
17415563 GAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACATAGAAATATGAAGATGTGC
390 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * * *
17415628 CCAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAATG
455 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * * * *
17415693 CCCGCCCGCCCACCCGCCCGCTTGTTTCATCGATTAGCTTAGGCGTACAGAGTTCATTCCCAGTC
520 CCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * *
17415758 TAAGATCGGATCAGACCGACGGTTGTGGCAGCAGGATCGGCAGCACGTAG-AGAGGACCCGACCG
585 TAAGATCGGATCAGACCAAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATCG
* * * * *
17415822 ATCCCCGTCTTGCGCATCCC-ACCCTCTGGCCGGTTGAGCGCCCACACGCTTGTTTCATGGGTTG
650 ATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
*
17415886 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATA-GG
715 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGA-ACGG
* * * * * **
17415950 ACTGGGCTGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCCCATTTTTCTTC
778 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC
* ** * *** *
17416015 ATCAGAGG----ATCGTCGGAGAACCTGAACGGTAGCATTGGGGTTCTGA
843 ATC-GGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
17416061 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCA
1 CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT-A
*
17416126 -ATTGGCCCCCTATCCCTCAT-AAACCTC-AGGAACTCACACCCCCTTAAAGAGCATTTGAGGTT
64 TATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * *
17416188 TTACAAGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAA
128 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
17416253 AAAATATTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTTGCATGCCATCAAAAATACAAGGAT
193 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * ** *
17416318 CACGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAAACGCAAA
258 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAA
** * * * *
17416383 AAGTTTTGAAAATCGTGAAAAATAGACAACGTGTCGTCTTGCCATGAAACTTCACGTGAGGGCTT
323 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
17416448 AAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
388 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
** * *
17416513 GCCTAAACCCACAAACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCCCTGGCCGGCGTAG
453 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
** * *
17416578 T----GCCCGCCCG--C-CCC-CTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCGTTCCCAG
518 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
17416635 TCTAAGATC
583 TCTAAGATC
17416644 AAACTGGACC
Statistics
Matches: 7546, Mismatches: 812, Indels: 428
0.86 0.09 0.05
Matches are distributed among these distances:
838 1 0.00
839 179 0.02
840 96 0.01
841 171 0.02
842 300 0.04
843 1 0.00
844 5 0.00
845 2 0.00
849 2 0.00
852 4 0.00
853 2 0.00
855 1 0.00
856 1 0.00
858 1 0.00
859 1 0.00
861 1 0.00
862 1 0.00
864 2 0.00
865 3 0.00
866 4 0.00
867 1 0.00
868 3 0.00
869 2 0.00
870 1 0.00
871 2 0.00
872 112 0.01
873 71 0.01
874 2 0.00
875 12 0.00
876 285 0.04
877 226 0.03
878 1 0.00
879 45 0.01
880 3 0.00
881 2 0.00
882 353 0.05
883 275 0.04
884 62 0.01
885 114 0.02
886 6 0.00
887 321 0.04
888 208 0.03
889 179 0.02
890 776 0.10
891 349 0.05
892 253 0.03
893 63 0.01
894 57 0.01
895 3 0.00
896 18 0.00
897 33 0.00
898 751 0.10
899 260 0.03
900 348 0.05
901 434 0.06
902 174 0.02
903 19 0.00
904 14 0.00
905 128 0.02
906 10 0.00
907 8 0.00
908 152 0.02
909 612 0.08
910 13 0.00
911 1 0.00
912 1 0.00
913 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
CCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCGGATCAGACCAAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAAGGGGACCCGATCGA
TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGAACGGACC
GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATC
GGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
Found at i:17410595 original size:26 final size:26
Alignment explanation
Indices: 17410566--17410617 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17410556 GGGTTAACTT
* *
17410566 GGCATACGAAGTTCATTTCCTGTCTA
1 GGCATACGAAGTTCATTCCCAGTCTA
*
17410592 GGCATACGGAGTTCATTCCCAGTCTA
1 GGCATACGAAGTTCATTCCCAGTCTA
17410618 AGATCGGACC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (26 bp):
GGCATACGAAGTTCATTCCCAGTCTA
Found at i:17414123 original size:26 final size:26
Alignment explanation
Indices: 17414092--17414144 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17414082 GTTGACTTAG
*
17414092 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
*
17414118 GCATACAGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17414144 G
1 G
17414145 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17414445 original size:909 final size:900
Alignment explanation
Indices: 17412310--17416643 Score: 5892
Period size: 909 Copynumber: 4.8 Consensus size: 900
17412300 GTTGACTTAG
* * ** *
17412310 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGAACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
17412375 CTCGAGCATGTGCTGGTGGCGT-ATTTTTCTTCATCGCGGCACCATCGTCGGAGCCTCGCCGGAG
65 CTCGGGCATGTGCTGGT-GCCTCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
17412439 AACCTGACC-GCGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGCGGGTTGTGCGGACATGATGT
129 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGG-GGG-TGTGCGAACATGATGT
* *
17412503 GCGAT-GGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
192 GCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17412567 CACCCCTTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
17412632 TGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGTATTGTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* * * *
17412697 TGTGCATGCCAACAAAAATAGAACGATCACGTCTACTAAGTTTGGGGACAAAACTCCTTTCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGTCAAAACTCCTTCCGAAA
* * * * * *
17412762 AAATCTTGAAAAATCCCAAACCACAAAACG-TTTCAGAAATCATGAAAAATAGAAAACAAGTCGT
451 AAATTTTAAAAAATCCCAAACCA-AAAAAGTTTTGA-AAATCGTGAAAAATAGAAAACGAGTCGT
17412826 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
17412891 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACAGCTT
579 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
17412956 GTGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCG----CCCGTCCGCTCATTTCGTCAGTT
644 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGGTT
* *** **
17413017 GGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCGGATTGGAGTGAA-GGTTGCGGCAGCAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CCAAGGGTTGCGGCAGCAG
* * *
17413081 GATCGACAGCACGCAGAGGGGGACCTGACCGATCTCCAGCTTGCGCATCCCGCCCCTCTGGCCGA
773 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGA
* * * * * *
17413146 CTGGGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCACATGGAGTTCATTCCCAGTCTAA
838 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17413209 ACATACAGAGTTCATTCTCAATCTAAGAACGGACTAGACCGAGGGTTACGGCAGCACATGCTAGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * **
17413274 CTCGGGCATCTGCTGGTGTCTCATTTTTCTAT-GTCGGGGCACCATCGTCGGAGCATCGTTGGAG
65 CTCGGGCATGTGCTGGTGCCTCATTTTTCT-TCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
17413338 AACTTGACCAGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGCGGGGTGTGC-ACACATGATG
129 AACCTGACCGGTGGCATTGGGGTTCCGACGATCG-GGGGGCCGG-GGGGTGTGCGA-ACATGATG
*
17413402 TGCGATAGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
17413467 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
17413532 ATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
17413597 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGTCAAAACTCCTTCCGAAA
* * *
17413662 AAATTTTAAAAAATCCCAAACCATAAAAATTTTTGAAAAACGTGAAAAATAAAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCAAACCA-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
17413727 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
17413792 CTTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTG
580 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
17413857 CGCATCCCGTCTCTTTGGCAGGCGTAGTGCCCGCCCGCCCGCTTGCCTGCCCACTCGTTTCGTCG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCAC---CC-GCCCGCTCGTTTCATCG
* *
17413922 GTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTGGACCAGACCAAGGGTT-CTGGCAG
706 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGC-GGCAG
* * * * *
17413986 CAGGATCGACAGCATGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCTCGCCCCTCTAGC
770 CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGC
*
17414051 CGACTGAGCGCCCGCACGCTCGTTTCATTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCT
835 CGACTGAGCGCCCGCACGCTCGTTTCA-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
17414116 AA
899 AA
* * ** *
17414118 GCATACAGAGTTTATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTTTGGCAGCACATGTTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
** * * * *
17414183 CTCGGGCATGTGCTACTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGA
65 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** *
17414248 ACCTGACCGGTGGCATTGGGGTTCAAACGATCTGGGGGGTCAGGGGGGTGTGCGAACATGATGTG
130 ACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGAACATGATGTG
17414313 CGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17414378 ACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
17414443 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17414508 TGCATGCCAACAAAAATACAAGGATCACGTCTAATAAGTTTGGGTTCAAAACTTCTAT-CGAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGTCAAAACTCCT-TCCGAAAA
* * *
17414572 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCAAACC-AAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
17414637 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
17414702 ATTGGTAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAGCCACGGCTTCC
581 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *** * * *
17414767 GCATCCCGCCTCTCTAATCAGCGTCGTGCCCGCTCGCCCACCCGCCCGCTCGTTTCATCGGTTGG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGG
* * * *
17414832 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGACAGTAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGAT
* * * ** * *
17414897 CGGCAAG-ATGCAGAGCGGGACCCGGTCGATCTCCAGCTTGCGCAT-TCCGCCCCTCTGGCCGGC
776 CGAC-AGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCT-CGCCCCTCTGGCCGAC
*
17414960 TGA--GCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17415020 GCATACGCAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTTCGACAGCACATGCTGG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTACGGCAGCACATGCTGG
* * * *
17415084 GCTTGGGCATGTGCTGGTGCCACATTTTTCTCCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
17415149 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGACCGGGGGGTGTGCGTACATGATGTG
129 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGAACATGATGTG
* *
17415214 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17415279 A-CCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTG--TGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17415341 GGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTGTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTT
* * * *
17415405 GTGCATACCAACAAAAATACAAGGATCACATCTAATAAGTTTGGGGTGAAAACTCCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGTCAAAACTCCTTCCGAAAA
* ** *
17415470 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCAAACC-AAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
17415535 TGCCATTAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
17415600 ATTGGAACATAGAAATATGAAGATGTGCCCAAACCCACCTACCACCATATCGATCCACGGCTTGC
581 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
17415665 GCATCCCATCTCTCTGGCCGACGTAATGCCCGCCCGCCCACCCGCCCGCTTGTTTCATCGATTAG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGG
* * * * * *
17415730 CTTAGGCGTACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGACGGTTGTGGCAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGAT
* * * **
17415795 CGGCAGCACGTAGA-GAGGACCCGACCGATCCCC-GTCTTGCGCATC-C-CACCCTCTGGCCGGT
776 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCAG-CTTGCGCATCTCGC-CCCTCTGGCCGAC
* *
17415856 TGAGCGCCCACACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17415918 GCATACGAAGTTCATTCCCAATCTAAGATAGGACTGGGCTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
17415983 CTCGGGCATGTGCTGGTGCCCCATTTTTCTTCAT--------CA------GAGGATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
17416034 ACCTGAACGGTAGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGAACATGATGTG
*
17416099 CGATGGGTGCTGGTACTTGGCCCTTCA-ATTGGCCCCCTATCCCTCAT-AAACCTC-AGGAACTC
193 CGATAGGTGCTGGTACTTGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTC
* * * *
17416161 ACACCCCCTTAAAGAGCATTTGAGGTTTTACAAGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
17416226 ATGGGGACACTTTTTTCAAATGGTCAAAAAATATTGTACACTTCGAGTTTTTAGCTGATTTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
17416291 TTTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGTCAAAACTCCTTCCGAAA
* *
17416356 AAATTTTAAAAAATCCCGAAACGC-AAAAAGTTTTGAAAATCGTGAAAAATAGACAACGTGTCGT
451 AAATTTTAAAAAATCCC-AAAC-CAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
17416420 CTTGCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** **
17416485 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACAAACCACCCTATCGATCCACGGCTT
579 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * **
17416550 GCGCTTCCCGTCTCCCTGGCCGGCGTAGTGCCCGCCCG------C-CCC-CTCGTTTTGTCGGTT
644 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGGTT
* *
17416607 GGCTTAGGCATACGAAGTTCGTTCCCAGTCTAAGATC
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
17416644 AAACTGGACC
Statistics
Matches: 3063, Mismatches: 323, Indels: 118
0.87 0.09 0.03
Matches are distributed among these distances:
879 43 0.01
880 3 0.00
881 1 0.00
883 1 0.00
884 61 0.02
885 120 0.04
886 1 0.00
887 322 0.11
888 7 0.00
889 1 0.00
890 2 0.00
895 1 0.00
896 17 0.01
897 30 0.01
898 557 0.18
899 112 0.04
900 361 0.12
901 284 0.09
902 180 0.06
903 17 0.01
904 2 0.00
905 130 0.04
906 5 0.00
907 5 0.00
908 145 0.05
909 649 0.21
910 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCTCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGAACATGATGTGCGA
TAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCAAACCAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17415024 original size:26 final size:26
Alignment explanation
Indices: 17414994--17415046 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17414984 GTTGACTTAG
*
17414994 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
17415020 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
17415046 G
1 G
17415047 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:17415922 original size:26 final size:26
Alignment explanation
Indices: 17415892--17415944 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17415882 GTTGACTTAG
* *
17415892 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17415918 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17415944 G
1 G
17415945 ATAGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17420019 original size:25 final size:26
Alignment explanation
Indices: 17419971--17420022 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17419961 AGTTGACTAG
17419971 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17419997 GCATACGGAGTT-ATTCCCGGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17420022 G
1 G
17420023 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17420909 original size:26 final size:26
Alignment explanation
Indices: 17420873--17420924 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17420863 TTGACTTAGA
* *
17420873 CATACGGAGTTCATTCCCAGTGTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
17420899 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
17420925 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:17421320 original size:892 final size:892
Alignment explanation
Indices: 17419102--17424396 Score: 6535
Period size: 892 Copynumber: 6.0 Consensus size: 892
17419092 GTTGACTTAG
* * * *
17419102 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGCTTTCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* *
17419167 -TCGGGCATGTGCTGCTGCCTCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT---C---G--T---CGGAGA
* * * *
17419231 ACCTGACCGGTGGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
120 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
17419295 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17419360 ACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
17419424 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** *
17419489 TGCATGCCAACAAAAATACAAGGATCACGTCTAATAAGTTTGGGGCCAAAACAT-CTACCAAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCAAAAA
* ** *
17419553 AATTTTAAAAAATCTC-AAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
444 AATTTTAAAAAATCTCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
* **
17419617 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAACTAT
509 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
17419682 CATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGAGCCACGGCTTG
574 CATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
17419747 CGCATCCCGCCTCTCT-GACCGACGTCGTGGCCGCTCGCCCACCCACCCGCTCGTTTCATCGGTT
639 CGCATCCCGCCTCTCTAG-CCGACGTAGT-GCCGCTCGCCCACCCGCCCGCTCGTTTCATCGGTT
* * * * * * *
17419811 GGCTTAGGCATCCGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGA-GG--GCTGCAGTAAG
702 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAGG
* ** *
17419873 ATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCACTCTGGCCGGC
766 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
* * * *
17419938 TGA--GCCTGCACGCTCGTTTCATGAGTTGAC-TAGGCATACGAAGTTCATTCCCAGTCTAA
831 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
17419997 GCATACGGAGTT-ATTCCCGGTCTAAGATTGGACCGGATTGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
17420061 CTCGAGCATGTGCTGCTGCAGCA-TTTTCTTCACCAGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC---G--T---CGGAGA
* * *
17420125 ACCTGATCGACGGCATTGGGGTTCC-AGCGATCGGGTGGGCC-GGGGGGTGTGCACACATGATGT
120 ACCTGATCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
17420188 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17420253 CACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17420318 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * *
17420383 GTGTGTGCCAACAAAAATACAAGGACCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
379 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* *
17420448 AAGTTTCAAAAATC-CGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
444 AATTTTAAAAAATCTCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
*
17420512 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
509 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
17420577 CATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGTTTG
574 CATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
17420642 CGCATCCCGCCTCTCTAGCCGACGTAGTGCCCGCTCGCCCGCCCGCCCGCTTGTTTCGTCGGTTG
639 CGCATCCCGCCTCTCTAGCCGACGTAGTG-CCGCTCGCCCACCCGCCCGCTCGTTTCATCGGTTG
* * * * *
17420707 GCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAAGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAGGA
* * * *
17420772 TCGACAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
767 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
* * * *
17420837 GAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGACATACGGAGTTCATTCCCAGTGTAA
832 GAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17420898 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACTAGACTGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * **
17420963 CTCGGTCATGTGCGGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGATCGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGATCGGC
* * *
17421028 GACATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGTG-GACACATAATGTGCGATGGGTGC
131 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG-CACATGATGTGCGATGGGTGC
17421091 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * ** *
17421156 ATAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGTTATTAAAGTGTTTGAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
17421221 TTTTCAAATAGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
17421286 CAAAAATACAGGGATCAGGTCTACCAATTTTGGGGCCAAAACTCCTT-TAGAAAAAATTTTAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA-AAAAAATTTTAAAA
17421350 AATCTCG-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
454 AATCTCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* * * *
17421414 ACTTCAGGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGCACA
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
* * * * *
17421479 TAGAAATATGAAGATTTGCCGAAACCCACCTATCACCCTATCGATCAACGGCTTGCGCATCCCGC
584 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* ** * * * *
17421544 TTCTCTAGCCGGTGTAGTGCCCGCCCGCCCACCCGCCTGCTTGTTTCACCGGTTGGCTTAGGCAT
649 CTCTCTAGCCGACGTAGTG-CCGCTCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * * *
17421609 ACGGTGTTCATTCCCAGTCTAAGACCAAACCGGATGAGGGTTGCGGTAGCAGGATCGGCGGCACG
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * ** *
17421674 CGAGAGGGGGACCCGGTCGATCCCCGGACTTGCGGATCCTGCCCCT-TGGCCGGTTGA--GCCCG
778 C-AGAGGGGGACCCGATCGATCCCCGG-CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
*
17421736 CACGCTCGTTTCATGGGTTGACTT-GCGCATACGGAGTTCATTCCCAGTCTAA
841 CACGCTCATTTCATGGGTTGACTTAG-GCATACGGAGTTCATTCCCAGTCTAA
* ** * ** *
17421788 CCATACGGAGTTCATTCTTAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
** * **
17421853 CTCGGGCACATGCTGGTGCCGCATTTTTCTT---C---G------C--CGGAGAACTTGATCGAT
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGATCGGC
* * ** *
17421904 GGCGTTGGTGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGTTGCT
131 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
17421969 GGTACTTGGCCCTTATATTGGTCCCTTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAA
196 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* ** * *
17422034 GAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGTTATTAAAGTGTCTAAAATGGGGGCACTTT
261 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
17422099 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATGCATGCCAAC
326 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
** *** * *
17422164 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTAGTTTTGAAAAATTTTTAAGAAA
391 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* *
17422229 TCTCG-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
456 TCTCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
*
17422293 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
521 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACA
* **
17422358 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CATTGGCTTGCGCATCCCATC
586 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTGCGCATCCCGCC
* * ** * * *
17422422 TCTCCAGTC-AGCGTAGTG-C-C-CGCCCGTCCGTCCACTCGTTTCGTCGGTTGGCTTAGGCATA
650 TCTCTAGCCGA-CGTAGTGCCGCTCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
** * * * *
17422483 CGGAGTTCATAACCAGTCTAAGATCAGACCGGACAGAGGGTTACGGCAGTAGGATCGGCAACACG
714 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * * * * *
17422548 TAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTACCCCTCTGGCCCGCTGATCGGCCACA
778 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
* *
17422613 CGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
17422663 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
17422728 CTCGGGCATGTACTGGTACCGCA-TTTTCTTCATCGGGGCACTATCACCCGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG------CA--C---CATCGTCGGAGA
* * * *
17422792 ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGTGCACATGATGTG
120 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
17422857 CTATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-CGAGAACTCAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17422921 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17422986 GGGGACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTATCTGAATTTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
17423051 TGCCTGGCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTTTTCC-AAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
17423115 AGTTTAAAAAATC-CTAAATCGTAAAAAGTTTCAAAAATTGA-GAAAAATAGAAAACGAGTCATC
445 ATTTTAAAAAATCTCGAAACCGTAAAAAGTTTCAAAAA-TCATGAAAAATAGAAAACGAGTCATC
* *
17423178 TTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGG
509 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
17423243 CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGATTG
574 CATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * * *
17423308 CGCATCACGTCTCTCTGGCCGGCATAGTGTCCGC-CACCCACCCACCCGCACGTTTCATCAGCTG
639 CGCATCCCGCCTCTCTAGCCGACGTAGTG-CCGCTCGCCCACCCGCCCGCTCGTTTCATCGGTTG
* * * *
17423372 GCTTAGGTATATGGAGTTCATTCCCAGTCCAAGATCAGACCGGATGGAGGGTTGCGGCTGCAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-GAGGGTTGCGGCAGCAGGA
* * * *
17423437 TCCGCAGCATGCAGAGGGGGACCCGA-CTGAACCCCAGCTTGCGCATCCCACCCCTCTGGCCGGC
767 TCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
*
17423501 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA-T-----TC---
831 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17423554 -C-T----AG-----T-----T-TAAGATCGGACCAGGCTGAGGGTTGTTG-CAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-CGACAGCACATGCTGG
* * * ** *
17423601 GTTCGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGTGCACCATCGCCGAAGCATCGCTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT---C---G--T--C-GGAG
* * * * *
17423666 AACCTGACCGACGGCATT---G--AC-ACGATCGGGGGGGCCAGGGAGGGTGTGTGCACATGATG
119 AACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
* * * * * *
17423725 TACGATGGGTGCTAGAACTTGGCCCTTATATTGGCCCCCTATCCTTCACCAAACCTTGAGAACTC
183 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17423790 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
17423855 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTT
313 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * **
17423919 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTACTGAAA
378 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
17423984 AAATTTT-AAAAATC-CTGAAA-CATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
443 AAATTTTAAAAAATCTC-GAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
17424046 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
507 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
17424111 GGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
572 GGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
17424176 TACGCATCCCGTCTCTTTGGCAGGCGTAGT---GCT--------CGCCCGCTCGTTTCGTCGATT
637 TGCGCATCCCGCCTCTCTAGCCGACGTAGTGCCGCTCGCCCACCCGCCCGCTCGTTTCATCGGTT
* * * * **
17424230 GGCTTAGGCATACAGACTTCATTCCCAATCTAAGATCAGTCTTTGATCGAGGGTTGCGGCAGCAG
702 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGGAT-GAGGGTTGCGGCAGCAG
* * * *
17424295 GATCGGCAACACGCAGAGGCGGACCCGATCGAT-CCCGGCTTGTGCATCCCACCCCTTTGGCCGG
765 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGG
* *
17424359 CTGAAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
830 CTG-AGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
17424397 AGAGCATTTG
Statistics
Matches: 3878, Mismatches: 431, Indels: 217
0.86 0.10 0.05
Matches are distributed among these distances:
859 80 0.02
860 78 0.02
861 1 0.00
864 3 0.00
866 2 0.00
867 2 0.00
869 17 0.00
870 321 0.08
871 137 0.04
872 17 0.00
873 95 0.02
874 87 0.02
875 163 0.04
876 40 0.01
877 456 0.12
878 3 0.00
880 2 0.00
884 1 0.00
885 2 0.00
887 1 0.00
889 2 0.00
890 135 0.03
891 28 0.01
892 605 0.16
893 19 0.00
894 235 0.06
895 458 0.12
896 4 0.00
897 199 0.05
898 257 0.07
899 112 0.03
900 200 0.05
901 37 0.01
902 62 0.02
903 17 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGATCGGC
GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
TCTCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
CTCTAGCCGACGTAGTGCCGCTCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGATGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17421793 original size:26 final size:26
Alignment explanation
Indices: 17421763--17421813 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17421753 TTGACTTGCG
17421763 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
**
17421789 CATACGGAGTTCATTCTTAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
17421814 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:17424020 original size:26 final size:26
Alignment explanation
Indices: 17423981--17424038 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
17423971 AATCCTACTG
* *
17423981 AAAAAATTTTAAAAATCCTGAAACAT
1 AAAAAATTTCAAAAATCCTGAAAAAT
* *
17424007 AAAAAGTTTCAAAAATCGTGAAAAAT
1 AAAAAATTTCAAAAATCCTGAAAAAT
*
17424033 AGAAAA
1 AAAAAA
17424039 CGAGTCGTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.22
Consensus pattern (26 bp):
AAAAAATTTCAAAAATCCTGAAAAAT
Found at i:17424980 original size:595 final size:595
Alignment explanation
Indices: 17423797--17424987 Score: 1674
Period size: 595 Copynumber: 2.0 Consensus size: 595
17423787 CTCACACCCC
*
17423797 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGA
* * *
17423862 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATG
66 CACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGATTTTTTTGTGCACG
**
17423927 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTACTGAAAAAATTTTA
131 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTACCAAAAAAATTTTA
* * **
17423992 AAAATCCTGAAACATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
196 AAAATCCCGAAACACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACAA
* * *
17424057 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
261 AACTTCACGTGAAGGCATAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
17424122 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCCCG
326 ACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACATACGCATCCCG
* * * *
17424187 TCTCTTTGGCAGGCGTAGTGCTCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGACTTCAT
391 TCTCTCTGGCAGACGGAGTGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGACTTCAT
* ** * * * *
17424252 TCCCAATCTAAGATCAGTCTTTGATCGAGGGTTGCGGCAGCAGGATCGGCAACACGCAGAGGCGG
456 TCCCAATCTAAGATCAGACTCGGACCAAGGGTTGCGACAGCAGGATCAGCAACACGCAGAGGCGG
* * *** * * * * *
17424317 ACCCGATCGATCCCGGCTTGTGCATCCCACCCCTTTGGCCGGCTGAAGCGCCCGTACGCTCATTT
521 ACCCGACCGACCCCGGCTTACCCATCCCACCCCTCTGGCCCGCTGAAGCACCAGCACGCTCATTT
17424382 CGTGGGTTGA
586 CGTGGGTTGA
* * *
17424392 CTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGA
1 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGA
17424457 CACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCAC
66 CACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTG-ATTTTTTTGTGCAC
* * * *
17424522 GCC-AAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
130 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTACCAAAAAAATTTT
* * *
17424586 AAAAAATCCCGAACCCCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAC
195 -AAAAATCCCGAAACACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAC
* ***
17424651 AAAACTTCACGTGGAGGCATAAGCGATTGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
259 AAAACTTCACGTGAAGGCATAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
17424716 ACACAG-AA-ATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACATACGCATCC
324 ACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACATACGCATCC
* * *
17424779 CGTCTCTCTGGCCGACGGAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
389 CGTCTCTCTGGCAGACGGAGTG----CCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGA
* *** * * * * *
17424844 GTTCATTCCTTGTCTAAGATCAGAC-CGGACCAAGGGTTGTGACAGTAGGATCAGCAGCATGGAG
450 CTTCATTCCCAATCTAAGATCAGACTCGGACCAAGGGTTGCGACAGCAGGATCAGCAACACGCAG
* ***
17424908 AGG-GGACCCGACCGACCCCGGGTTACCCATCCTGTCCCTCTGGCCCGCTG-AGCACCAGCACGC
515 AGGCGGACCCGACCGACCCCGGCTTACCCATCCCACCCCTCTGGCCCGCTGAAGCACCAGCACGC
*
17424971 TCGTTTCGTGGGTTGA
580 TCATTTCGTGGGTTGA
17424987 C
1 C
17424988 GTAGGCATAC
Statistics
Matches: 522, Mismatches: 68, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
594 71 0.14
595 192 0.37
596 172 0.33
597 31 0.06
598 56 0.11
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (595 bp):
CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGA
CACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGATTTTTTTGTGCACG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTACCAAAAAAATTTTA
AAAATCCCGAAACACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACAA
AACTTCACGTGAAGGCATAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACATACGCATCCCG
TCTCTCTGGCAGACGGAGTGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGACTTCAT
TCCCAATCTAAGATCAGACTCGGACCAAGGGTTGCGACAGCAGGATCAGCAACACGCAGAGGCGG
ACCCGACCGACCCCGGCTTACCCATCCCACCCCTCTGGCCCGCTGAAGCACCAGCACGCTCATTT
CGTGGGTTGA
Found at i:17425029 original size:26 final size:26
Alignment explanation
Indices: 17424992--17425044 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17424982 GTTGACGTAG
*
17424992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17425018 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17425044 G
1 G
17425045 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17426801 original size:24 final size:26
Alignment explanation
Indices: 17426762--17426812 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17426752 GTTGACTTAG
*
17426762 GCATACAGAGTTCATTC-CAGTCTAA
1 GCATACAGAATTCATTCTCAGTCTAA
17426787 GCATAC-GAATTCATTCTCAGTCTAA
1 GCATACAGAATTCATTCTCAGTCTAA
17426812 G
1 G
17426813 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 9 0.38
25 15 0.62
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAATTCATTCTCAGTCTAA
Found at i:17427666 original size:26 final size:26
Alignment explanation
Indices: 17427630--17427681 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17427620 TTGACTTAGC
*
17427630 CATAAGGAGTTCATTCCTAGTCTAAG
1 CATAAGGAGTTCATTCCCAGTCTAAG
*
17427656 CATATGGAGTTCATTCCCAGTCTAAG
1 CATAAGGAGTTCATTCCCAGTCTAAG
17427682 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCCAGTCTAAG
Found at i:17429483 original size:25 final size:26
Alignment explanation
Indices: 17429424--17429474 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17429414 GTTAACTTAG
*
17429424 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
17429450 GCATACGGAGTTCATT-CCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
17429475 TCGACCGGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:17432999 original size:26 final size:26
Alignment explanation
Indices: 17432963--17433015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17432953 GTTAACTTAG
* *
17432963 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17432989 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17433015 G
1 G
17433016 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17437797 original size:880 final size:878
Alignment explanation
Indices: 17424392--17447983 Score: 18094
Period size: 893 Copynumber: 26.4 Consensus size: 878
17424382 CGTGGGTTGA
* *
17424392 CTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17424457 CACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCAC
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
17424522 GCC-AAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
17424586 AAAAAATCCCGAACCCCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAC
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * * ***
17424651 AAAACTTCACGTGGAGGCATAAGCGATTGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * * * *
17424716 ACACAG-AA-ATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACATACGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
17424779 CGTCTCTCTGGCCGACG--G-AGTGCCCACCCGCCCG-CTCG---TTTCGTCGGTTGGCTTAGGC
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTC-CGCCTTTTCGTCGGTTGGCTTAGGC
** * * * *
17424837 ATACGGAGTTCATTCCTTGTCTAAGATCAGACCGGACCAAGGGTTGTGACAGTAGGATC-AGCAG
455 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGA-CAG
* * * * * * * * * *
17424901 CATGGAGA-GGGGACCCGACCGA-CCCCGGGTTACCCATCCTGTCCCTCTGGCCCGCTGAGCACC
519 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
17424964 AGCACGCTCGTTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGT
584 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-CG-A--
* *
17425029 TCATTCCCAGTCTAAGATCGGACCGAACTG-AGGGTTACGGTAGCACATGCTGGGCTCGAGCATG
645 T-A-T-CCAGTCT--GA--GG---G--TTGCA--G---C---AGCACATGCTGGGCTCGGGCATG
* * * * ** * *
17425093 TGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAACATCATCGAAGAACCTGACCGG
690 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * * * *
17425158 CGGCATTGAGGTTCCGGCGATCGAGGGGGCTAGGGGGGGTGTGTGCACATGATGTGAGATGGGTG
755 CGGCATTGGGGTTCCGACGATCGGGGGGGC--CGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
17425223 CTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCC
818 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17425284 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCACTAAAGTGTCTGGAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17425348 CAC-TTTTTCAAATGGTC-CCAAATCTTATACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17425411 GCCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAGAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * ** *
17425476 AAAAAATCTCAAACCG-TAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
17425540 G-AACTTCACGTGAAGGCTTAAGGGGACCATTGTATGAATTTACAAG-CATAAAAATGGCATTGG
261 GAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * *
17425603 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAAACGGCCTGCGCAT
325 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CACGGCTTGCGCAT
* * * * * * *
17425668 CTCGTCTCTCAGGCCAGCGTAGT-GATCGCCCGCCCGCCCG-CCGCTTGTTTCATTGGTTGGCTG
389 CCCGTCTCTCTGGCCGGCGTAGTAG-T-GCCCGCCCGCCCGTCCGCCT-TTTCGTCGGTTGGCTT
* * * * * **
17425731 AGGTATACGGAGTTCATTCCCAGTCCAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCGA
451 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGA
* * * * *
17425796 CAAG-ACGTAGAGGTGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAG
516 C-AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
17425860 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGAACTTCATTCCCAGTCTAAG-ATCG-
580 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCGA
* * * * *
17425923 -AT-CAGACCGATGCTTGCGGCAGCACACGCTTGGGCTCAAGCATGTGCTGCGTGCGCAAGCATG
645 TATCCAGTCTGAGGGTTGCAGCAGCACA----T--GCT---G---G-GCT-C--G-G---GCATG
* * * * *
17425986 TGCT-GTGCCGCCTTTTTCTTCTTCCTTCTCGGGGACACCATCGTCGAAGCATCACCGGAGAAAC
690 TGCTGGTGCCG-C-ATTT-TTCTT-C--GTCGGGG-CACCATCGCCGGAGCATCGCCGGAG-AAC
* * * *
17426050 CTGACCGACGGTATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGAACATGATGTGCGA
747 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
17426115 TGGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTGAGGAACTCACA
812 TGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACA
17426179 CCCC
875 CCCC
* *
17426183 TTTAAAAGAGCATTTGAGATTTTAAACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAAATG
1 CTT-AAAGAGCATTTGAGATTTT--ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATG
* * *
17426248 GGGGCACTTTTTTTCAAATAGTCACAAAAATCTTGTACACTTCGAGTTTTTAGTGCTGAATTGTT
62 GGGACAC-TTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTA--GCTGAATTTTT
* * * * * *
17426313 TTCTGCATGCC-AACAAAATACAAGGATCATGTCTTCCAAGCTTGGGGCCAAAACTCCTTTCGAA
123 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
17426377 AAAATTTTAAGAAATCCCGAACAGCATAAAGTTTCGAAAAATCATG-AAAATAGAAAACGAGTCA
188 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCG
*
17426441 TCTTGCCATCAAAACTTCACGTGAAGGCTTAAGGGA-CATTGTATGAATTTACAAGCCATAAAAA
252 TCTTGCCAT-GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
17426505 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-TGC
316 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
17426569 TTGCGCATCCCATCTCTCTGGCCGAC---GTAGTGCTCGCCCGCCCGTTCG---TTTCATCGGTT
381 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCGCCTTTTCGTCGGTT
* **
17426628 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAATGATCAGG-CCGAACCGAGGGTTGCGGTAGCA
446 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAA-GATC-GGACCGGACCGAGGGTTGCGACAGCA
* * * * ** * ** * * *** *
17426692 AGATCAATAGCACGTAGAGGGGGACCCGAACGATCCTCGGGAT--GCA-CGCTCGTTTCATGGGT
509 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC-T-GGC
* * * *** * * ** * * * *
17426754 TGACTTAG-GCATACA-G--AG-TTCAT---TCCAGTCTAAGCATAC-GAATTCATTCTCAGTCT
572 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT-TAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * * *
17426810 AAG-ATCG-GA-CCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCA
636 AAGAATCGATATCCAGTCTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* *
17426872 CATTTTTCCTCGTCGGGGCACCATCG-C----CA------GAGAACCTGACCGGCGGCATTGGGG
701 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * *
17426926 TTCCGGCGATC-GGGGCGCTAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
766 TTCCGACGATCGGGGGGGC--CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
17426990 CCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAACTCACACCTC
829 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
17427040 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
17427105 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * *
17427170 GCCAAAAAAAATATAAGGATCACGTCTAACGAGTTTGGGGCTAAAACTCCCTCCAAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
*
17427235 AAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
17427300 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * **
17427365 ATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACTCTATCGATCCACTACTTGCGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * * * *
17427430 CGTCCCTCTGGCC-G-GT-GTAGTTCCC-TTCGCCTGCCCGCTCATTTCGTCGGTTGGGTTAGGC
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCGC-CTTTTCGTCGGTTGGCTTAGGC
* * * *
17427491 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTCCGACAGTAGGATTGACAGC
455 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGC
* * * * * ** * *
17427556 ACGTAGAGGGGGACCCGGCCGATCCCCGTCTTGTGCATCCCCCCCCGCACGCTCGTTTCGTGGGT
520 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-CG--GC-TGAG-
* ** * * * * *** * * * *
17427621 TGACTTAGC-C-ATAAGGAGTTCATTCCTAGTC-TAAGCATATGGAGTTCATTCCCAGTCTAAG-
580 CG-C-CCGCACGCT--CG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * *
17427682 ATCG-GAT-CAGACCGATGCTTGC-GACAGGACACGTTGGGCTCAGGCATGTGCTGGTGCCGCAT
640 ATCGATATCCAGTCTGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * *
17427744 TTTTCTTCGCCGGGGCACCATCGTCGGAGCAT-GCGCGGAGAACCTGATCGACGGCATTGGGGTT
704 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC-CGGAGAACCTGACCGACGGCATTGGGGTT
* * *
17427808 CCGACGATTGGGGAGGCCGGGGGGCTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCC
768 CCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
17427873 TTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCC
832 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17427920 CTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
17427985 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** * * * *
17428050 ACCAGTAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAATTCCTTTCAAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* **
17428115 AAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
17428180 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
17428245 ACATAGAAATATGAAGATGTCCCTAAACTCACCT-CACACCCTATCGATCCACGACTTGCGCATC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC-CACCCTATCGATCCACGGCTTGCGCATC
* * *
17428309 TCGTCTCTCTGGCC-G-GT-GTAGTGCCCGCCCGCCCGGT-CG--TTTT-GTCGATTGGCTTACG
390 CCGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCC-GTCCGCCTTTTCGTCGGTTGGCTTAGG
* * * * * * * *
17428367 CATACGGAATTGATTCCTAGTCTAAGATTGGACCAGACCGAAGGTTGCTG-CAGCAGGATTGGCA
454 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCAGGATCGACA
* * * * ** * *
17428431 GTACGTAGAGGGGGACCCGTCTGATCCTTGGCTTGCGCATCTCGCCCCTCTGGCCAGCTGAGCGC
518 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
17428496 CCGCACGCTCGTTTCGTGGCTTGACTTAGGCAAACGGAGCTCATTCCCAGTCTAAGAATATGGAG
583 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A-ATCGA-
* * * *
17428561 TTCATTCCCAAACTAAGATTGGACCGGATCGAGGGTTGCGGCAGCACATACTGGGATCGAGCATG
645 -T-A-T--C---C--AG--T----C---T-GAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATG
* * * * * **
17428626 TGCCGGTGCTGCATTTTTCTTCATCGAGGCACCATCACCGGAGCATCATCGGAGAACCTGACC-A
690 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * *
17428690 GCGACATTGGGGTTCCGACGAT-TGGGGGTCCGGGGGGGTGTGCACACATGATGTGCGATGGGTG
755 -CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
17428754 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCC
818 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
17428815 CTTAAAAAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
17428880 CACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
17428945 ACCAAAAAAAATACATGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
17429010 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17429075 GAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
17429140 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
17429205 CGTCTCTCTGGCCGGC---GTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGTTTAGGC
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCGC-CTTTTCGTCGGTTGGCTTAGGC
* * * * * * * *
17429267 ATACGAAGTTCATTCCTAGTTTAAGATCGGGCCGCACTGAGGGTTGCGATAGTAGGATCGACAGC
455 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGC
* * * * * * *
17429332 ACGTAGAGGGGGACCCGGCCAATCCCCGGCTTGCACATCCCGCCTCTCCGGCCAGCTGAGAGCCC
520 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
17429397 GCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
585 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-C-GA--T
* * *
17429462 CATTCCAGACTAATCGACCGGACCGGGGATTGCAACAGCACATGCTGGACTCGGGCATGTGCTGG
646 -A-TCCAG-----T----CTGA---GGG-TTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * *
17429527 TGCCGTATTTTTCTTCGTCGGGCCACCATCGCCGAAGCATCGTCGGAGAACCTGATCGGCGGCAT
696 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCAT
* * * *
17429592 TGGGGTTCCGGCGATCGGGGGTGCCAGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACT
761 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
17429657 TGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCGCGAGAACTCACACCCT
826 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * *
17429710 CTTAAAGAGCATTTGAGATTTTACAAGTTTTCTGCCAGTAGCCATTAAAGTGTGTAAAATGGAGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * **
17429775 CACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTCTTAACTGGTTTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
17429840 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCCTCCGAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
*
17429905 AAAAAATCCC-AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
17429969 G-AACTTCATGTGAAGGCGTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
17430033 ACGTAGAAATATGAAGATGTGCCTAAACCCAGCTACCACTCTATCGATCCACGGCTTGCGTATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * *
17430098 CGTCTCTCTGG-C--CAAAGTAGTGCCCGCCCGCCCGCCCG-CTTGTGTCGTCAGTTGGCTTTGG
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCGCCTT-T-TCGTCGGTTGGCTTAGG
** *
17430159 CATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGA--GA--GTTGCGGCAGCAGGATCGACAG
454 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAG
* * * ** *
17430220 CATGAAAAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCT
519 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
** * * *
17430285 CGCACGCTCGTTTCGTGATTTAACTTAGGAATACGGAGTTCATTCCCAGTCTAATGATATGGAGT
584 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GA-ATCGA--
* *
17430350 TCATTCCCAATCTAAGATCGGACCAGATTGAGGGTTGCAGCAACACATGCTAGGCTCGGGCATGT
645 T-A-T--C---C--AG-T-----C----TGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGT
* * * * *
17430415 GCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAGCCGGACCGAT
691 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * * * * *
17430480 GGCATTAGGGTTTCGATGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTG
756 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
17430545 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCC
821 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
17430603 CTGAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17430668 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTCTTAGCTGAATGTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** * *
17430733 GCCAAAAAAAATATAAGGATCACGTCTACCTTGTTTGGGGCTAAAACACCTTCCGAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
17430798 AAAAAATCCCAAACGGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17430863 GAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
17430928 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
17430993 CGTCTCTCTGGCCGACGTAGT-GCCTGCCCGCCCGCCCGCTCGCCCGCTCGTTTT-GTCGGTTGG
391 CGTCTCTCTGGCCGGCGTAGTAG--TGCCCGCCCGCCCG-T---CCGC-C-TTTTCGTCGGTTGG
* * * ** *
17431056 CTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGGCCCCACCGAGGGTTGCAACAGCAGGAT
448 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGAT
* * * * * * *
17431121 CGACAGCACGCAGAGGGGGACCCGACCAATCCTCGGCTTGCACATCCTGCCTCTCTGGCCAGCTG
513 CGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
17431186 AGAGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATC
578 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATC
* * * * * * *
17431250 G-GAT-CGGACCG-GGGATTAC-GACAGCACATGCTGGACTCGGGCATGTGCTGGTGCCGTATTT
643 GATATCCAGTCTGAGGG-TTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * *
17431311 TTCTTCGTCGGGCCACCATCACCGGAGCATCGTCGGAGAACCTGGCCGACGGCATTGGGGTTTCG
706 TTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* *** *
17431376 GCGAT-GTGGGGTATCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
771 ACGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
17431440 TATTGGCCCCCTATCCCTCATCGAACCTCAAGAACTCACACCCA
835 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17431484 CTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17431549 CAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17431613 GCCAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
**
17431678 AAAAAATCCC-AACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17431742 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
17431807 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGTATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
17431872 CGTCTCTCTGG-C--CG-ACTAGTGCCCGCCCGCCCGCCCGCCCACTTGTGTCATCAGTTGGCTT
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCG--C-CTT-T-TCGTCGGTTGGCTT
* * * * ** *
17431933 TGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATC--A--GAGAGTTGCGGTAGTAGGATCGA
451 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGA
* * * * * * * *
17431994 CAGCATGAAAAGGGGGACCCAGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTAAGC
516 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
** * * * * *
17432059 GCCCGCACGCTCGTTTCGTGATTTAATTTAGGCATACGGAGTTCATTCCCAGTCT-AGGATTG-G
581 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCGAT
* * * * *
17432122 A-CCGGACTGAGGGTTGCAGCAACACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
646 ATCCAGTCTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * *
17432186 CGTCGGGGCACCATCACCGGAGCATCGCCAGAGAGCCTGACCGACGGCATTAGGGTTTCGATGAT
711 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * * * *
17432251 TGGGGGGGTCGGAGGGTGTGCGCACATGATGTACGGTGGGTGCTGGTACTTGGCCCTTATATTGG
776 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
17432316 CCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCC
841 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17432354 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGCA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17432419 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
17432484 GCCAAAAAAAATATAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
17432549 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
17432614 GAAACTTCACGTGAAGGCTGAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
17432679 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
17432744 CGTCTCTCTGGCTGGCGTAGT-GCTCGCCCGCCCGCCCG-CTCG--TTTT-GTCGGTTGGCTTAG
391 CGTCTCTCTGGCCGGCGTAGTAG-T-GCCCGCCCGCCCGTC-CGCCTTTTCGTCGGTTGGCTTAG
* * * * * *
17432804 GCATACGGAGTTCATTCCCTGTCTAAGATCGGGCTGCACCGAGGGTTGTGACACCAGGATCGACA
453 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * *
17432869 GCACGCAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCAGCTGAGAGC
518 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
** * * * * *
17432934 TTGGACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGGAG
583 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-C-GA-
** * *
17432999 TTAATTCCCAGTCTAAGATCGGACCGGACCGGCGATTGCAATAGCACATGCTAGACTCGGGCATG
645 -T-A-T-CCAGTC-----T-------GA--GG-G-TTGCAGCAGCACATGCTGGGCTCGGGCATG
* * * ** * * *
17433064 TGCTGGTGCTGCATTTTTCTTCGTTGGGCCACCATCGTTGGAGGATCGTCGAAGAACCTGACCGA
690 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * * * *
17433129 CGGCATTGGGGTTCCAACGATAGGGGGTGCCGGGGGGTGTGCGCACACGATCTACGATGGGTGCT
755 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
17433194 GGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCT
820 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
17433253 CTTAACGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGT
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17433317 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17433382 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTA
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
17433447 AAAAAATCCC-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17433511 GAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
17433576 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
17433641 CGTCTCTCTGGCCGACGTAGT-GCCTGCCCGCCCGTCCGCCCG-CTTGTGTCGTCAGTTGGCTTA
391 CGTCTCTCTGGCCGGCGTAGTAG--TGCCCGCCCGCCCGTCCGCCTT-T-TCGTCGGTTGGCTTA
* * * *
17433704 GGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCGGA--GA--GTTGCGGCAGCAAGATCGAC
452 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * * * *
17433765 AACATGAAAAGGGGGACCCAGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCGGAGCG
517 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*** * * *
17433830 CCCGCACGCTCGTTTCGTTATTTAACTTAGGCATACAGAGTTCATTCCCAGTTTAATG-ATACGG
582 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GAAT-C-G
* *
17433894 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAACACATGCTAGGCTCGGGCA
644 A--T-A-T--C---C--AG-T---------CTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
* * *
17433959 TGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGCCGGAGAGCCCTGAC
688 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA-ACCTGAC
* * * * * ** *
17434024 CGACGGCATT-AGGTTTCGATGATTGGGGGGGCCGGGGGGTGTGCGCGCATGATGTATGATGGGA
752 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
17434088 GCTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCTAGAACTCACA--CC
817 GCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17434149 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-ACAGTAGCAATTAAAGTGTCTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17434213 CACTTTTTTC-AATGGTCACAAAATCTTGTACACTTTGAGTTCTTAGCTGAA-TTTTTTATGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17434276 GCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
17434341 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAGTCGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * ** *
17434406 GAAACTTCACGTGACGGCTTAAGGGACGATTGTATGAATTTACATGAAATAAAAATGGTATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
17434471 ACGTAGAAATATGAAGATGTACCTTAACCCACGTACCACTCTATCGATCCACGGCTTGTGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
17434536 CGTCTCTCTGGCCGAC---GTAGTGCCCGCCCGCCCGCCCG-CTTGTGTCATCGGTTGGCTTAGG
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCGCCTT-T-TCGTCGGTTGGCTTAGG
* * *
17434597 GATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGA--GA--GTTGC-AGCAGCAGGATCGACA
454 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCAGGATCGACA
* * * * *
17434657 ACACGCA-AGGGGGACCCAGCCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGC
518 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * ** *
17434721 CGGCACGCTCGTTTCATGATTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATGATATGGAG
583 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GA-ATCGA-
*
17434786 TTCATTCCCAGTCTAAGATGGGACCGGACTGAGGGTTGCAGCAGCACATGCTGGACTCGGGCATG
645 -T-A-T--C---C--AG-T---------CTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATG
* * * * * *
17434851 TGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGTCAGAGAGCCTGA-CGA
690 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * * *
17434915 CGGCATTAGGGTTTCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTACGATGGGTGCT
755 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * * *
17434980 GGTACTTGGCTCTTATATTGGTCCCCTATCTCTTATCAAACTTCGAGAACACACACCCC
820 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17435039 CTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
17435104 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTGTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17435169 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTCGGGCCAAAACTCCTTCCGAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
17435234 AAAAAATCTCGAACCGTAGAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTACCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
17435299 GAAACTCCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
17435364 ATGCAGAAATTTGAAGATGTGCCTAAACCCACCTACCACACTATCGATCTACGGCTTGCGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
17435429 CGTCTCTCTGGCCGAC---GTAGTGCTCACCTGCCCGTCCGCTCGTTTCGTTGGTCGGCTTAGGC
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCGC-CTTTTCGTCGGTTGGCTTAGGC
* * * * *
17435491 ATACGGACTTCATTCCCAATCTAAGATTGGACCGGACCAAGGGTTGC-AGCAGCAGGATCGATAG
455 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCAGGATCGACAG
* * ** * * *
17435555 CACGCAGAGTGGGACCCAGCCGATCCCCATCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCG-C
519 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
17435619 C-CAC-AT--TTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAAAGT
584 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A-AT--CGA
**
17435679 TCATTCCTAGTCTAAGATCAGACCGAACCAAGGGTTGGGGCAGCACATGCTGGGCTCGGGCATGT
645 T-A-TCC-AGTC-----T------G-----AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGT
* * ** * * ** *
17435744 GCTAGTGCCGCATTTCTCTTCACCGGGGCACCATCGCCGGATCATCACCAAAGAACCTGACCGGC
691 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * * * * *
17435809 GGCATTGTGCTTCCGGCGATCGGGGGGGCTGAGGGGTGTGCGCACATGATGTGC-AGTTGGTGCT
756 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCT
* ** *
17435873 GGTACTTGGCCCTAATATTGGCCCCCTATCTTTCATCAAACCTCAAGAACTCACACCCC
820 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
17435932 CTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATTGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
17435997 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTTAGTTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
17436062 GCCAACAAAAATACAAGGATCAC-TTTACCAAGTTTAGGGCCAAAACTCTTTCCGAAAAAATTTA
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
17436126 AAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAGAAATAGAAAATGAGTCGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
17436191 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
17436256 ATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCGCGGCTTGCGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
17436321 CGTCTCTCGGGCC-GC--CGTAGTGCCCGCCCGCCC-ACTCG---TTTCGTCGGTTGGCTTAGGC
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTC-CGCCTTTTCGTCGGTTGGCTTAGGC
** * * * * ** *
17436379 ATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGATCGAGGGTTACAATTGTAGGATCTG-CAG
455 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATC-GACAG
* ** * * * * * *
17436443 CACACAGAGGGGGACCCGATCAATCCCCAGCTTACGCA-CCTGCCCCTTTGGTCGGCTGAGCGCC
519 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
** ** *
17436507 CATACGCTCGTTTCGTGGGTTGACTTAGGCATACACAGTTCATTCCCAGTCTAAGTATACGAAGT
584 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-CG-A--
* * *
17436572 TGATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGC-GACAACACATGATGGGCTCGAGCATG
645 T-A-T-CCAGTC-----T-------G----AGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATG
* * * *
17436636 TGGTGGTGCCGCATTTTT-TTCGTCGGGGCACCATCGCCGGAGCATCGTC-GAAAACCTGACGGA
690 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* *
17436699 CGGCATTGGGGTTCC-AGCGATTGGGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGGGTG-
755 CGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
17436762 TGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCC
819 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17436822 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17436887 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGTTGAATTTTTTTGTGAAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
17436952 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
17437017 AAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATTGAAAACGAGTCATCTTCCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
17437082 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
17437147 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
17437212 CGTCTCGCTGGCCGGCGTAGTACCCGTCGGCCCGCCCGCCCGTCCGCACTTTTCGTTGGTTGGCT
391 CGTCTCTCTGGCCGGCGTAGTA---GT--GCCCGCCCGCCCGTCCGC-CTTTTCGTCGGTTGGCT
* * * * * * * *
17437277 TAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGACGCTTCCGATAGTAGGATCG
450 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCG
* * * * * * * ** ** *
17437342 GCAGTATGCAGATGGGGACCTGGTCGATCCCTGGCTTATGCATCCCGTTCCTCTGGCCGGCTGAA
515 ACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
17437407 CGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-ATCGA
580 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCGA
* * * *
17437471 -A-CCAGTCTGAGGGTTGCAGCATCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAATCTTCT
645 TATCCAGTCTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
17437534 TCGTCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCCG-CAGCATTAGGGTTCCGACG
710 TCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA-CCGACGGCATTGGGGTTCCGACG
* *
17437598 ATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG-TGGTACTTGGCCCTTATATT
774 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
17437662 GGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
839 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
17437702 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17437767 CACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17437832 GCCAAAAAAAATACAAGGATCACGACTACC-A-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTA
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
** * *
17437895 AAAAAATCCCGAACTACAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
17437960 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
17438025 ACGTAGAAATATGAAGATGTGACTAAACCCACCT-CCACCCTATCGATCCACGGCTTGCGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * * *
17438089 CGTCTCTCTGGCC-G-GT-GTAGTGCCCGCCCTTCTGCCCGCTCGTTTCGTCGGTTGGCTTACGC
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCGC-CTTTTCGTCGGTTGGCTTAGGC
* *
17438151 ATATGGAGTTCATTCCCAGTATAAGATC--A---GACC-A-------G--A-CA-GA--G---G-
455 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGC
* ** *
17438193 --GTAGAGGGGGACCC-AACG-TCCCCGGCTTACGCATCCC-CACCCTCTGGCCGGCTGAGCGCC
520 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGC-CCCTCTGGCCGGCTGAGCGCC
* * *
17438253 CGCACGCTCGTTTCGTGGGTTGACTTTGGTATACGGAGTTCATTCCCAGTCTAAGCATATGGAGT
584 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A-ATCGA--
* * * *
17438318 TCATTCGAAGTGTATGATCGGACCGGACTG-AGGGCTGTGATAGCACATCCTGGGCTCGGGCATG
645 T-A-TC-CA--GTCTGA---G---GG-TTGCA--GC------AGCACATGCTGGGCTCGGGCATG
* * *
17438382 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAAACTGACCGA
690 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
**
17438447 CGGCATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTG
755 CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTG
*
17438511 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
818 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17438572 CTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17438637 CAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * ** * * * *
17438702 GTCAACAAAAATACAAATATCACGTCTACCTAGTTTGGGGCCAAAAATCCTACCGAAAAATTTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
17438767 AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTGGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
17438832 GAAACTTCACGTGAAGGCTTAAGGGGCCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
17438897 ACATAGAAATATGAAGATGTACCTAAACGCACCTACCACCCTATCAATCCACGGCTTGCGCATCT
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
17438962 TGTCTCTCTGGCTGGCGTAGTA---CCTGCCCGCCCG-CTCG---TTTCGTCGGTTGGCTTAGGC
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTC-CGCCTTTTCGTCGGTTGGCTTAGGC
* * * ** * *
17439020 ATACGGAGTTCATTCCCAGTCCAAGATCAGACCGGACTGAGGGTTGCGGTAGTAGGATC-AGTAG
455 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGA-CAG
* * * * * * ** * *
17439084 CACACAAAGGAGGACCCGACCGATCCCCGGCTTGTGCATCCTGTACCTCTGGTCGACTGAGCGCC
519 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * *
17439149 CGCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCTGACTAAGCATACGGAGT
584 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-C-GA--
*
17439214 TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGT
645 T-A-T--C---C--AG-TC---T------GAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGT
* * * * * *
17439279 GCTGGTGCCGCATTTCTCTTCGCCAGGGCACCAT---C---G--T---CGGAGAACTTGACTGGC
691 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
*
17439333 GGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
756 GGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT
17439398 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
820 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * **
17439457 CTTAAAAAGCATTTAAGATTTTACAGGTTTGGGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17439522 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTGTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17439587 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
17439652 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17439717 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
17439782 ACGTAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGTGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* **
17439847 CGTCTCTCTAGCCGGC---GTAGTGCCCGCCCGCCCACCCGCCTACTCGTTTCGTCGGTTGGCTT
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCG-C--CT--TTTCGTCGGTTGGCTT
* * * * ** * *
17439909 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATTGG
451 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGA
* * ** ** * *
17439974 CAGTACGCAGAGGGGGACCCAGTTGATCCCCGGCTTGCGCATCCTTCCCCTCTGGTCAGCTGAGC
516 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
17440039 GCTCGCACGCTCGGTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAAGCATACGG
581 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-C-G
* * *
17440104 AGTTCATTCCCAGTTTAAGATCGGACCAGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCA
644 A--T-A-T-CC------AG-T-----C---T-GAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
* * * * * * *
17440169 TGTGCTGGTGTCACATTTTTCTTCATCGGGGCACTATCGTC-GAACAATCGTCGGAGAACCTGAC
688 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC-ATCGCCGGAGAACCTGAC
** * * * * *
17440233 CGGTGGCATTGGAGTTTCGGA-GATCGAGGGGGCCGAGGGGGCGTGTGCTCACATGATGTGCAAT
752 CGACGGCATTGG-GGTTCCGACGATCGGGGGGGCC--GGGGG-GTGTGCGCACATGATGTGCGAT
* * *
17440297 GAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGGGAACTCACACCC
813 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
17440362 C
878 C
*
17440363 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17440428 CATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * ** * * ** *** **
17440493 GCCAAGAAAAATACAAGGATCATGACCGA-CGGGATTGGGTTTCCGGCAA-TCGGGGGGGCCGGG
131 GCCAAAAAAAATACAAGGATCACG-TCTACCAAGTTTGGG--GCC-AAAACTC----CTTCCGAA
**** ** * * *** *** * *** ** * ** * * * **** *
17440556 GGGGTTTGCACACAT---GATGTGCAATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTA-T
188 AAAATTTTAAAAAATCCCGAACCGCAAAAAGT-TTCAAAAATCGT--GAAAAATAGAAAACGAGT
* * * ** * * * * *
17440617 CCCTCAT-CAAACCTCGAGAAC-TCAC---ACACCCTTAA-AGAGCATT-TAAGATTTTA-TAGC
250 -CGTCTTGC---CAT-GA-AACTTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAAGC
* ** * * ** * * ** * * *** ** **
17440674 TTTGCTTCCATA-GCCATT-AAAGTGTCTGAAATGGGGACACT-TTTTTCAAATGGTCA-C-AAA
308 ----CATAAAAATGGCATTGGCA-CGT-AGAAATATGAAGA-TGTGCCT-AAA--CCCACCTACC
* * * * ** ** * * * * ** ** * * **
17440734 ATCTTGTACAATTTGA-GTTTTTAGCTGAAT--TGT-T-T-TGGGCATGCCAACAAAAATACAAA
363 ACCCTAT-CGA-TCCACG-GCTT-GC-GCATCCCGTCTCTCT-GGC-CGGC-GTAGTAGTGC-CC
** * ** * * ***** ** * **** * *
17440793 G--ATCACGTCTACCAAGTTT-G-GGGCCAAATT-TCCAT-CCGAAAAAATT-----TTTAAAAA
419 GCCCGCCCGTCCGCC--TTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGA
* * * * * * * ** * * *** *
17440847 TC---CCGAACCGCAAGAAGTTTCAAAAATCATGA-AAACTAGAAAACG-AGTCGTCTTG-CCAG
481 TCGGACCGGACCG--AG-GGTTGC-GACAGCAGGATCGAC-AG--CACGCAG-AG-GGGGACCCG
** * * ** * *** * * *** ** * *** *** * **
17440906 G-AAACTTCACGTG-AAG-GCTTAAGGGACCAT-TGTATGAATTTA-CAAGCCATAAAAATGGCA
537 GCCGA-TCCCCG-GCTTGCGCAT-CCCGCCCCTCTGGCCG-GCTGAGC--GCCCGCACGCTCGTT
** ** * * ** * ** ** *
17440966 T--TGGCATG-C--AGAAATATGAAGATGTGCCTAAACCCA-CCTACCACCCTATCGATCCA--C
596 TCGTGGGTTGACTTAGGCATACG--GA-GT-TC-ATTCCCAGTCTAAGAATCGAT--ATCCAGTC
* * * * * * * ** **
17441023 -GA--CTTGC-GCATCCCGT-CTTTTTGGC-C-GGCTTAGTGCCCGCCCGCCCGC--TCGT-TTC
654 TGAGGGTTGCAGCAGCACATGC---TGGGCTCGGGCAT-GTG-CTG-GTG-CCGCATTTTTCTTC
* * * *** * * *
17441078 GTCGGTTGGCTTAGGCATACG--GAATTCATTC-CC--A-ATATGAGATCGGATCAG-ACTGAGG
712 GTCGG--GGC--A-CCAT-CGCCGGA-GCA-TCGCCGGAGA-ACCTGA-CCGA-CGGCATTG-GG
* *** * * * * * *** * *
17441136 GTTACGGCAGCAAGATCGGTAGCACGCAGAGGGG-G-ACCCAGC-CGATCCCCGACTTGCGCATC
765 GTT-C--C-G-ACGATCGG--GGGGGCCGGGGGGTGTGCGCA-CATGATGTGCGA--TG-G-GTG
* *** * ** * * * ** * * ** * **
17441198 CCGCCCCTCTGGCCGGCTGATCACCGACACGCTCATTTCGTGGGTTGACTTAGGCATACG-GAGT
818 CTGGTACT-TGGCC--CTTAT-ATTGGC-C-C-CCTATC----CCTCA-TCAAACCT-CGAGAAC
** **
17441262 TCATTCCTAGT
870 TCACACC--CC
* ** * * ** * * **
17441273 CTAAGCATGCAGAGTTCATTCCCAG--TCTA-AGATCGGACCAGACCGAGGGTTGCGGCACCACA
1 CTTA--A---AGAG--CATT-TGAGATTTTACAGGTTTG--CTG-CC-A--GTAGC--CATTA-A
* * ** * ** * ** **
17441335 TGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTC-TGTCGGGGCACCATCATCGCGAGTAT
49 AG-T--G-TC-TG-AAATG--GG-GACAC-TTTTT-TCAAAT--GGTCA-CAAAAT--CTTGTA-
*** * * * * * * *******
17441399 CGAC--CGGAGAACCTGACCGACGGTATTGGGGTTTCG-ACGATCGGGGGGGCC-GGGGGTGTGC
97 C-ACTTC-GAG-TTTTTA--G-CTGAATT---TTTTTGTGC-AT-------GCCAAAAAAAAT--
* * * ** * ** * * **
17441460 GCAGATGATGTGCGATGGGTACC-AGTACTT-GGCCCTTATATTGCCCCCCTATCCCTCATCAAA
143 ACA-AGGA--T-C-ACGTCTACCAAGT--TTGGGGCC--A-A---AACTCCT-T-CC-GAAAAAA
** * * * * * * * * * * * *** * **** *
17441523 CCTTGAGAACTCAC-ACCCCCTTAAAGAGCATTT--GAGAT-TTTACAGGTTTGCCGCCAGTAGC
192 TTTTAAAAAATCCCGAACCGC--AAAAAG--TTTCAAAAATCGTGA-AAAATAGAAAAC-G-AGT
* * ** **
17441584 CGT-TAAAGTGTC-TGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTT--GTACACTTCG
250 CGTCT----TGCCATG--A-----A-AC----TTC--AC-GT---GAAGGCTTAAG-GGAC--C-
* * * * * * * ** **
17441645 AGTTTTTAGCTGAATTTTTTTTTTTTGCATGCCAAAAAAAAT-ACA-AGGATGACGT-CTACCAT
289 A--TTGTA--TGAA---------TTTACAAGCC-ATAAAAATGGCATTGG--CACGTAGAAATAT
** * * ** ** *** *** * **** *
17441707 G--TTTGGGGCCGAAACTCCTTCTGAAAAAATTTTAAAAAATCC-CGAAC---CGCAAAAAGTTT
338 GAAGAT-GTGCCTAAAC-CCACCT---ACCACCCT-ATCGATCCACG-GCTTGCGCATCCCGTCT
***** ** *** * **** * * * *** * **
17441766 CAAAAATCATGAAAAATAGAAAACG--AG-TCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAG
396 C-TCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTC-CGCC-T-TTTCGTCGGTT---GGCTT-A-
* * ** * * ** * *** **
17441828 GGACCATTTTACGAATTTACA-AGCCA-T-AAAAAT-GGCATTGGTA-TGCAGAAATATGA-AG-
452 GG--CA---TACGGAGTT-CATTCCCAGTCTAAGATCGG-ACCGG-ACCG-AGGGTTGCGACAGC
* * * * ****** *** * ** * * *
17441886 ATG-T-GCCTA-AACCCA-CCTACCACCCTATCAATCCATGGCTTGCGAATCCCGTCTCTCTGGC
508 AGGATCGAC-AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * * *
17441947 CGACGTAGTGCCCGACCGCCCACCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACTGAGTTC
572 CGGC-T-GAG--CG-CC-CGCA------CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * ** * * *
17442012 ATTCCTAGTCTAAG-ATC-AGA-CCAGACCGAGGGTTGTGGCAGCAGGAT-C-GACAGCAC--GC
625 ATTCCCAGTCTAAGAATCGATATCCAGTCTGAGGGTTGCAGCAGCA-CATGCTG--GGCTCGGGC
* ** ** *** ** * *
17442070 A-GAGGGGGACCCAGCCAATCCTCGACTTGCGCATCTTGGC-CC-TCCGACCGG-TCGTACGCTC
687 ATGTGCTGGTGCC-G-C-AT--TTTTCTT-CG--TCGGGGCACCAT-CG-CCGGAGCAT-CGC-C
* *** ** * * ** * *
17442131 GTTTCGTG-GGTTGACTTA-GGCATACGGAGTTCATTCCGAGTCTAAGATCGGACTGGACCGAGG
740 G----GAGAACCTGACCGACGGCAT-TGG-G---GTTCCGA--C---GATCGG-GGGGGCCGGGG
* * * * * * * ** ** *
17442194 GTTACG-GCAGCACATG--GTGGGCTCGG-GCAT-GTGC-TGGTGCCGTAT-TT-TTCTTC-GTC
790 GGT--GTGC-GCACATGATGTGCGATGGGTGC-TGGTACTTGG-CCCTTATATTGGCCCCCTATC
*** * * ** * *
17442250 GGGGCAGC-ATCGC-CGGAGAAC-CTGATCGC
850 -CCTCATCAAAC-CTC-GAGAACTCACACCCC
* ** ** * * * *
17442279 C-----G-GCATTGTG-G-TTTCGAC-GGTCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG-
1 CTTAAAGAGCATT-TGAGATTT-TACAGGT--TTGCTGCCA-----GT-AGC-CA-TTAAAGTGT
* * * ** ** * **
17442334 C-GAAGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
54 CTGAA--ATG--GG-----GACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTG---T-A
* ** * * * ** * *
17442398 CACCCCCTTAAAGAGCATTT--C-GGATTTTACAGGTTTACTGCCAGTAGTC-ATTAAAGTGTCT
97 CA----CTT--CGAGTTTTTAGCTGAATTTT-----TTT-GTG-CA-T-GCCAAAAAAAAT-AC-
* * ** * * *
17442459 GAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATGTTGTACACTT-CGAGTTTTTAGCTA
145 --AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA----CT-C-CTTCCGA------A---A
* ** * * **
17442519 AATTTTTTTTTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
189 AA-----ATTT---T----A-AAAAAT-C-CCGAAC-CG-C-AAAAAGTTT-----CAAAA----
* * ** * * * *
17442584 ATCCGAAAATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAATATAGAAAACCA
227 AT-CG-------TGAAAAAT-----A--G-AAAACGAGTC----GTCTTGC--CAT-G--AA--A
17442649 GTCGTCTTGCCATGAAATTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
265 -----CTT--C-----A-----CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
17442714 AAATGGCATTGGCATGCAGAAACATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCAC
313 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
17442779 GACTTGCGCATCCCGTCTCTCTGGCCGGC---GTAGTGCCCGCCCGCCCGCTCTCTCGTTTT-GT
378 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCG-TC-CGCCTTTTCGT
* * * ** *
17442840 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTATGGCA
441 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACA
* * * * ** *
17442905 GCAGGATCGGCAGCATGCAGAGTGAGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGG
506 GCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * * *
17442970 TCGGCTGAGCGGCCGTACGCTCATTTCGTCGGTTGACTTAGGCATACGAAGTTTATTCCCAGTCT
571 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
17443035 AAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATACTG
636 AAGAAT-C-GA--T-A-TCC-AGTC-----T-----------GAGGGTTGCAGCAGCACATGCTG
**** ** * * **
17443100 GGCTCGGGCATGTGCTGGCATTGCATTTTTCTTCACCAGGGCACCATGGCCGGAGCATCATC-GA
678 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * * * *
17443164 GAACTTGACCGGCGGGATTGGGGTTCCGACGATCGAGAGGGCCGGGGGGGTTTGCGCACATGATG
743 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
**
17443229 TGCGATGGGTGCTGGTACTTGTTCCTTATATTGGCCCCCTATCCC-CATCAAACCTCGAGAACTC
807 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17443293 ATACACC
872 ACACCCC
* * * *
17443300 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAATAGCCATTAAAGTGTCTGAAATAGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17443365 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
** * *
17443430 GCCAGCAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
17443495 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
17443560 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
17443625 ATGCAGAAACACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
17443690 CGCCTCTCTGGCCGGC---GTAGTGCCCGCCCGCCCG-CTCG---TTTCGTCGGTTGGCTTAGGC
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTC-CGCCTTTTCGTCGGTTGGCTTAGGC
* * * * * ** * *
17443748 ATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGACGGTTATGGCAGCAAGATCGACAGC
455 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGC
* *** * *
17443813 ACGCAGAGTGGGACCCAATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
520 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
17443878 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCG-GA-CC
585 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCGATATCC
* * * * *
17443940 GGACCGAGGGTTGCGGTAGCACA---T--GCT-----A---------G--G----------C-TC
650 AGTCTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * **
17443973 -GGG---CATCGTCGGAGCATCGTCGGAGAACATGACCGGCGGCATTGGGGTTTTGACGATC-GG
715 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* * * **
17444033 GGGGCAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCTT
780 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
17444098 CTATTCCTAATCAAACCTTGAGAACTCACACCCC
845 CTATCCCTCATCAAACCTCGAGAACTCACACCCC
** *
17444132 CTTATTGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17444197 CACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17444262 ACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** ** * *
17444327 ACAAAAT-CTGAACCATAAAAAGTTTCAAAAATTATGAAAAATAAAAAACAAGTCGTCTTGCCAT
196 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
17444391 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
261 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
17444456 ACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTAGATCCACGGCTTGCGCATCC
326 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * * * * *
17444521 CGTCTCTCTTACCGAC---GTAGCGCCCGCCCGCCTGCCCTCTCGTTTT-GTCGGTTGGCTTAGT
391 CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCGC-C-TTTTCGTCGGTTGGCTTAGG
* * * * * *
17444582 CATACGGAGTTAATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGC-AGTAGCAGGATCGACA
454 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCAGGATCGACA
* * * * *
17444646 GCACACAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCCCAG-CCCTCTGGCTGGCTGAGCG
518 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCC-GCCCCTCTGGCCGGCTGAGCG
* * * * *
17444710 CCCGTACGCTCGTTTCATGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
582 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-C-GA
* *
17444775 GTTCATTCCCAGTCTAAGATCGAACTAGACTGAGGGTTGC-GACAGCACATGCTAGGCTCGTGCA
645 --T-A-T--C---C----A--G---T---CTGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCA
* * * *
17444839 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATTGTCGGAGAACCTGACC
688 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* * *** *
17444904 GAC-GCATTGGGGTTCCGACGAGCGGACGGGTTGGGGGGGTGTGCGCACATGATGTACGATGGGT
753 GACGGCATTGGGGTTCCGACGATCGG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
17444968 GCTGGTACTTGGCCCTTATATTGG-CCCTTATCCCTCATCAAACCTCGAGAACTCACA-CCC
817 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17445028 CTTAAAGAGCAATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTATCTGAAATGGGG
1 CTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
17445093 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGTTC
65 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGC
* * **
17445158 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAAAAAACTCCTTCCGAAAAAATT
129 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * ** *
17445223 TTCAAAAATCCCGAACCGTAAAAGGTTTGAAAAATTATGAAAAATAGAAGACGAGTCGTCTTGCC
194 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
17445288 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTT
259 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
17445353 GCATGCAAAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCGCAT
324 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** ** * * * * ** *
17445418 CCCGTCTCTCTGGCCGATGTAGT-GCCCACCATCCCGCCCGCCCACTCGTTTAATCAGTTGGCTT
389 CCCGTCTCTCTGGCCGGCGTAGTAGTGC-CC-GCCCGCCCGTCCGC-CTTTTCGTCGGTTGGCTT
* ** * *
17445482 AGGCGTACGGAGTTCATT-CC---C--AGATC-GA----ACTAATGGTTGCGGCAGCAGGATCGA
451 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGA
* * * * * *
17445536 CAGCACGTAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGT
516 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
17445601 GCCCGTACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTATG-ATCG-G
581 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCGAT
* * * ** * * *
17445664 A-CCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTT
646 ATCCAGTCTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * *
17445728 CGTCGGGGCACCATCGCCGAAGCATCGCTGGAGAACCTGACCGACAGCATTGGGGTTCGGGCGAT
711 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
*
17445793 CGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
776 CGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
17445858 GCCCCCTAT-CCTCATCAAACCTCGAGAACTCACACCCC
840 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
17445896 CTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17445961 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTCTTAGCTGAATTTTTTTATGCA
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TTAGCTGAATTTTTTTGTGCA
* * * * *
17446025 TGCCAAAAAATATACAAGGATCATGACTACCAAGTTTGGGGCCAAAAAAT--TTCTGAAAAAATT
130 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATT
* * *
17446088 TTAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
194 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
17446153 ATCAAACTTCACGTGAAGGCTTAAGGGACCATTCTATAAATTTACAAGCCAAAAAAATGGCATTG
259 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
17446218 GCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCAT
324 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * *
17446283 CCCGTCTCTCTGG-TTG-AT-GTAGTACCCGCCCG--C-T-CG---TTTCGTCGGTTGGCTTAGG
389 CCCGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCGCCTTTTCGTCGGTTGGCTTAGG
* * * * * **
17446338 CATACGGAGTTCATTCCTAGTCTAAGATAGGATCGGATCGAGGGTTGC-AGTAGCAGGATCGGTA
454 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCAGGATCGACA
* * ** * * * * *
17446402 GCACACAAAGGGGGACCCGATCGATCCCCGACTTACGTATCCCGACCCTCTGGCCGGCAGAGCGC
518 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
17446467 TCGTACGCTCGTTTCGTGGTTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAGCATACGGAG
583 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-C-GA-
** * * * * * **
17446532 TTCATTCCCAGTCT--TTGAT-CAG-ACCAAACTG-AGGGTTTCGGCAGCACATGCT-G-G--GC
645 -T-A-T-CCAGTCTGAGGGTTGCAGCAGCACA-TGCTGGG-CTCGG--GCATGTGCTGGTGCCGC
*** * ** * *
17446588 -TTGGGC-T--T--GGGCACCATCGTCGGAGCATCATCGGAGAACTTGACCGGCGGCATTGGGGT
702 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
** * * *
17446647 TCCGACGATCGAACGTGTCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
767 TCCGACGATCG-GGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
17446712 CCTTATATTGGCCCCCTAT-CCTCAGCAAACCTCGAGAACTCACACCCC
830 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
17446760 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17446825 CACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGCATTTTTTTTTGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * ** *
17446890 GCCAACAAAAATGCAAGGATCACGTCTACCTAGTTTGGGGGAAAAAATCCTTCCGAAAAAATTTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
** *
17446955 AAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
196 -AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
17447020 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
260 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
17447085 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCGCATC
325 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * ** * * *
17447150 CCGTCTCTTTGGCCGACGCAGT-GCCCACCCGCCCGCCCG-CCAGCTCGTTTCATCGGTTAGCTT
390 CCGTCTCTCTGGCCGGCGTAGTAG--TGCCCGCCCGCCCGTCC-GC-CTTTTCGTCGGTTGGCTT
* * * * * *
17447213 AGGCGTACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTGC-AGCAGCAAGATCG
451 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCAGGATCG
** * * * * * * *
17447277 GTAGCACGTAAAGGGGGACCCGGCCAATCCCCGACTTGCGCATCTCGCACCTCTGGGCGGCTGAG
515 ACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** *
17447342 TGCCCGCACGCTCGTTTCGTGGGTCAACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-ATCG-
580 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCGA
* * * * * * *
17447405 GAT-CAGACCGAGAGTTG-TGACAGCACATGCTGGGTTCGGGCATGTGCTGGTGCCACATTTTTT
645 TATCCAGTCTGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTT
* ** ** * * * *
17447468 CTTCG-CTGGGGCACCGTCATCGGAGCATCATCGAAGAACCTAACCGGCGGCATTGGGGTTTCGA
708 CTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* **
17447532 CGATTGGGGGGGTTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
772 CGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
17447597 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCC
836 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
17447640 TTTAAAGAGTATTTGAGATTTTACAGGTTTGTTGCCATTAGCCATTAAAGTGTCTGAAATGGGGA
1 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17447705 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAACTGAATTTTTTTATGCAT
66 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * **
17447770 GCCAACAAAAATACAAGGTTCACGTCTAGCAAGTTTGGTGCCAGAAA-TCCTTTGGAAAAAATTT
131 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAAAAATTT
* * * * *
17447834 AAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCGTCTTGCAA
195 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
17447899 TGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
260 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
17447963 CATGTAG-AATAT-AAGATGTGC
325 CACGTAGAAATATGAAGATGTGC
17447984 TACCAAAATT
Statistics
Matches: 18505, Mismatches: 2929, Indels: 2548
0.77 0.12 0.11
Matches are distributed among these distances:
831 255 0.01
832 231 0.01
833 32 0.00
835 175 0.01
836 7 0.00
837 2 0.00
838 1 0.00
842 88 0.00
843 2 0.00
844 11 0.00
845 4 0.00
846 1 0.00
847 2 0.00
849 56 0.00
850 194 0.01
851 57 0.00
852 21 0.00
853 100 0.01
854 80 0.00
855 5 0.00
856 30 0.00
857 89 0.00
858 38 0.00
859 5 0.00
860 7 0.00
861 23 0.00
862 7 0.00
863 65 0.00
864 377 0.02
865 224 0.01
866 340 0.02
867 220 0.01
868 153 0.01
869 284 0.02
870 658 0.04
871 163 0.01
872 385 0.02
873 193 0.01
874 77 0.00
875 24 0.00
876 31 0.00
877 171 0.01
878 455 0.02
879 371 0.02
880 1161 0.06
881 278 0.02
882 10 0.00
883 6 0.00
884 12 0.00
885 528 0.03
886 30 0.00
887 34 0.00
888 186 0.01
889 342 0.02
890 581 0.03
891 509 0.03
892 638 0.03
893 1521 0.08
894 438 0.02
895 1273 0.07
896 355 0.02
897 700 0.04
898 696 0.04
899 702 0.04
900 149 0.01
901 64 0.00
902 75 0.00
903 267 0.01
904 126 0.01
905 32 0.00
906 257 0.01
907 143 0.01
908 51 0.00
909 112 0.01
910 104 0.01
911 108 0.01
912 66 0.00
913 17 0.00
914 21 0.00
915 28 0.00
916 17 0.00
917 16 0.00
918 6 0.00
919 8 0.00
920 5 0.00
921 4 0.00
922 4 0.00
923 3 0.00
924 2 0.00
925 1 0.00
926 7 0.00
927 2 0.00
928 2 0.00
929 2 0.00
930 3 0.00
932 2 0.00
933 3 0.00
934 13 0.00
935 2 0.00
936 4 0.00
937 4 0.00
939 5 0.00
940 4 0.00
941 6 0.00
942 2 0.00
943 1 0.00
944 4 0.00
946 6 0.00
947 5 0.00
951 7 0.00
953 3 0.00
954 6 0.00
955 3 0.00
956 9 0.00
957 1 0.00
958 3 0.00
959 3 0.00
960 6 0.00
961 3 0.00
962 2 0.00
963 5 0.00
964 12 0.00
965 4 0.00
966 6 0.00
967 6 0.00
968 1 0.00
969 5 0.00
971 2 0.00
972 3 0.00
977 5 0.00
978 3 0.00
979 3 0.00
980 3 0.00
981 8 0.00
983 8 0.00
984 3 0.00
985 6 0.00
986 4 0.00
987 7 0.00
988 4 0.00
989 8 0.00
990 7 0.00
991 4 0.00
992 12 0.00
993 20 0.00
994 14 0.00
995 19 0.00
996 22 0.00
997 24 0.00
998 18 0.00
999 10 0.00
1000 10 0.00
1001 13 0.00
1002 11 0.00
1003 8 0.00
1004 5 0.00
1005 7 0.00
1006 14 0.00
1007 15 0.00
1008 5 0.00
1009 5 0.00
1010 10 0.00
1011 12 0.00
1012 50 0.00
1013 16 0.00
1014 9 0.00
1015 8 0.00
1016 22 0.00
1017 22 0.00
1018 52 0.00
1019 35 0.00
1020 44 0.00
1021 24 0.00
1022 22 0.00
1023 19 0.00
1024 47 0.00
1025 13 0.00
1026 42 0.00
1027 31 0.00
1028 22 0.00
1029 9 0.00
1030 8 0.00
1031 22 0.00
1032 27 0.00
1033 17 0.00
1034 5 0.00
1035 4 0.00
1037 7 0.00
1038 17 0.00
1039 7 0.00
1040 10 0.00
1041 6 0.00
1043 7 0.00
1044 4 0.00
1045 2 0.00
1046 4 0.00
1047 5 0.00
1048 2 0.00
1049 1 0.00
1050 2 0.00
1051 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTAGTGCCCGCCCGCCCGTCCGCCTTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCA
CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCGATATCCA
GTCTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCC
Found at i:17438797 original size:26 final size:26
Alignment explanation
Indices: 17438743--17438805 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
17438733 AGTTTGGGGC
*
17438743 CAAAAATCCT--ACCGAAAAATTTTT
1 CAAAAATCCTGAACCGAAAAATGTTT
*
17438767 AAAAAATCCTGAACCGCAAAAA-GTTT
1 CAAAAATCCTGAACCG-AAAAATGTTT
*
17438793 CAAAAATCATGAA
1 CAAAAATCCTGAA
17438806 AAATAGAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 9 0.28
26 18 0.56
27 5 0.16
ACGTcount: A:0.51, C:0.19, G:0.08, T:0.22
Consensus pattern (26 bp):
CAAAAATCCTGAACCGAAAAATGTTT
Found at i:17438797 original size:27 final size:24
Alignment explanation
Indices: 17438744--17438798 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 24
17438734 GTTTGGGGCC
* *
17438744 AAAAATCCTACCGAAAAATTTTTA
1 AAAAATCCTACCGAAAAAGTTTCA
17438768 AAAAATCCTGAACCGCAAAAAGTTTCA
1 AAAAATCCT--ACCG-AAAAAGTTTCA
17438795 AAAA
1 AAAA
17438799 TCATGAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 9 0.35
26 4 0.15
27 13 0.50
ACGTcount: A:0.53, C:0.18, G:0.07, T:0.22
Consensus pattern (24 bp):
AAAAATCCTACCGAAAAAGTTTCA
Found at i:17439228 original size:26 final size:26
Alignment explanation
Indices: 17439177--17439229 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17439167 GTTGACTTAG
*
17439177 GCATACAGAGTTCATTCCCTGACTAA
1 GCATACAGAGTTCATTCCCAGACTAA
* *
17439203 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
17439229 G
1 G
17439230 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:17443040 original size:26 final size:26
Alignment explanation
Indices: 17443011--17443063 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17443001 GTTGACTTAG
*
17443011 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17443037 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17443063 G
1 G
17443064 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17444770 original size:26 final size:26
Alignment explanation
Indices: 17444740--17444792 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17444730 TTTGACTTAG
17444740 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17444766 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17444792 G
1 G
17444793 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17446525 original size:26 final size:26
Alignment explanation
Indices: 17446496--17446545 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17446486 TTTGACTTAG
*
17446496 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17446522 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
17446546 TTGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17446753 original size:864 final size:864
Alignment explanation
Indices: 17443976--17447964 Score: 4490
Period size: 864 Copynumber: 4.6 Consensus size: 864
17443966 TAGGCTCGGG
* * ** * *
17443976 CATCGTCGGAGCATCGTCGGAGAACATGACCGGCGGCATTGGGGTTTTGACGATCGG-GGG-GCA
1 CATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGTCCG
* * **
17444039 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCTTCTATTC
66 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TC
* * **
17444104 CTAATCAAACCTTGAGAACTCACACCCCCTTATTGAGCATTTGAGATTTTACAGGTTTGCTGCCA
130 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
17444169 GTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTC
195 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
17444234 GAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
260 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * ** **
17444299 GGGCC-AAAACTCCTTCCGAAAAAATTTTACAAAAT-CTGAACCATAAAAAGTTTCAAAAATTAT
325 GGGCCAAAAAAT-CTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
* *
17444362 GAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
389 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
17444427 AATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTAC
454 AATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTAC
* * ** * * *
17444492 CACCCTCT-AGATCCACGGCTTGCGCATCCCGTCTCTCTTACCGACGTAGCGCCCGCCCGCCTGC
519 CACCCTATCA-ATCCACGGCCTGCGCATCCCGTCTCTCTGGCCGACGCAG-TCAC-CCCGCC-GC
** ** * * * * * **
17444556 CCTCTCGTTTTGTCGGTTGGCTTAGTCATACGGAGTTAATTCCCAATCTAAGATTGGACC-AGAC
580 CAGCTCGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGA-AC
* * ** * ** *
17444620 TGAGGGTTGCAGTAGCAGGATCGACAGCACACAGAGGGGGACCCGACTGATCCCCGACTTGCGCA
644 TGAGGGTTGCAGCAGCAAGATCGGTAGCACACAAAGGGGGACCCGACCAATCCCCGACTTACGCA
* * * * * **
17444685 TCCCAGC-CCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCATGGTTTGACTTAGGCATAC-AG
709 TCCC-GCACCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTCAACTTAGGCATACGA-
*
17444748 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACTGAGGGTT
772 AGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-TC--AGA-C---CCAGAC------TT
* * * * ** *
17444813 GCGACAGCACATGCTA-GGCTCGTGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGGCAC
811 GTGACAGCAAATGC-AGGGTTCGGGCACATGCTGGTG-C-C----TTCTGCGCT-GGGGCAC
** ** * * *
17444873 CATCACCGGAGCATTGTCGGAGAACCTGACCGAC-GCATTGGGGTTCCGACGAGCGGACGGGT-T
1 CATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGA-GGGTCC
* *
17444936 GGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTTATC
65 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-
17445000 CCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCAATTTGAGATTTTACAGGTTTGCTGC
129 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGC
* *
17445064 CAGTAGTCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
193 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
17445129 TCAAGTTTTTAGCTGAATTTTTTT-TGTTCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
258 TCGAGTTTTTAGCTGAATTTTTTTATG--CATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
17445193 TTTGGGG--AAAAAACTCCTTCCGAAAAAATTTTCAAAAATCCCGAACCGTAAAAGGTTTGAAAA
321 TTTGGGGCCAAAAAA-T-CTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
** *
17445256 ATTATGAAAAATAGAAGACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
384 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *** *
17445321 GTATGAATTTACAAGCCATAAAAATGGCATTTGCATGCAAAAATATGAAGATGCGCCTAAACCCA
449 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCA
* * *
17445386 CCTACCACCCTATCGATCCACGGCCTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCACCATC
514 CCTACCACCCTATCAATCCACGGCCTGCGCATCCCGTCTCTCTGGCCGACGCAGT---CA-C--C
* * * *
17445451 CCGCCCGCCCA-CTCGTTTAATCAGTTGGCTTAGGCGTACGGAGTTCATTCC----C--AGAT--
573 CCG-CCG-CCAGCTCGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA
* * * * ** ** *
17445507 ---CGAACTAATGGTTGCGGCAGCAGGATCGACAGCACGTAGAA-GGGGACCCGACCGATCCCCG
636 GACCGAACTGAGGGTTGCAGCAGCAAGATCGGTAGCACACA-AAGGGGGACCCGACCAATCCCCG
* * * * * * *
17445568 ACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGTGCCCGTACGCTCGTTTCGTGGG-CTGACTTAG
700 ACTTACGCATCCCGCACCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTC-AACTTAG
* * * * * ** * *
17445632 GCATACGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTA-G
764 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCCAGACTTGTGACAGCAAATGC-AGG
* * ** *
17445696 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCG-TCGGGGCAC
828 GTTCGGGCACATGCTGGTGCC------TTCTGCGCT-GGGGCAC
* * * * * * * *
17445739 CATCGCCGAAGCATC-GCTGGAGAACCTGACCGACAGCATTGGGGTTCGGGCGATCGGAGGGGCC
1 CATCGTCGGAGCATCATC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGTCC
17445803 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
65 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
17445868 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCA
130 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
17445933 GTAGCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
195 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
17445998 GA-TTTCTTAGCTGAATTTTTTTATGCATGCCAA-AAAATATACAAGGATCATGACTACCAAGTT
260 GAGTTT-TTAGCTGAATTTTTTTATGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTT
* *
17446061 TGGGGCCAAAAAAT-TTCTGAAAAAATTTTAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCA
323 TGGGGCCAAAAAATCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG
* * *
17446125 TGAAAAATAAAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTCTAT
388 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
17446190 AAATTTACAAGCCAAAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTA
453 GAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTA
* ** * *
17446255 CCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGTTGATGTAGT-A-CCCG-C-CC-G
518 CCACCCTATCAATCCACGGCCTGCGCATCCCGTCTCTCTGGCCGACGCAGTCACCCCGCCGCCAG
* * * *
17446315 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT-AGGATCGGA-TCG
583 CTCGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA-GACCGAACT-G
* * * * *
17446378 AGGGTTGCAGTAGCAGGATCGGTAGCACACAAAGGGGGACCCGATCGATCCCCGACTTACGTATC
646 AGGGTTGCAGCAGCAAGATCGGTAGCACACAAAGGGGGACCCGACCAATCCCCGACTTACGCATC
* * * ** * *
17446443 CCG-ACCCTCTGGCCGGCAGAGCGCTCGTACGCTCGTTTCGTGGTTTGACTTAGGCATACGGATT
711 CCGCA-CCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTCAACTTAGGCATACGAAGT
** *
17446507 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTT-TGATCAGACCAAACTG-AGGGTTT
775 TCATTCCCAGTCTAAG-AT-CGGA--TCAGACCCAGACTTGTGA-CAG--CAAA-TGCAGGG-TT
* *
17446570 CGGCAGCACATGCTGG-G-C-T-TGGGCTTGGGCAC
831 CGG--GCACATGCTGGTGCCTTCTGCGCTGGGGCAC
* * * *
17446602 CATCGTCGGAGCATCATCGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGAACGTGTCG
1 CATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGA-GGGTCC
17446667 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
65 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
17446732 CTCAGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
130 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
17446797 GTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTC
195 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
17446862 GAGTTTTTAGCTGCATTTTTTTTTGCATGCCAACAAAAATGCAAGGATCACGTCTACCTAGTTTG
260 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * **
17446927 GGG-GAAAAAATCCTTCCGAAAAAATTTTAAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCG
325 GGGCCAAAAAAT-CTTCTGAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG
*
17446991 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
388 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
17447056 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
453 GAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTA
* *
17447121 CCACCCTATCGATCCACGGCCTGCGCATCCCGTCTCTTTGGCCGACGCAGTGCCCACCCGCCCGC
518 CCACCCTATCAATCCACGGCCTGCGCATCCCGTCTCTCTGGCCGACGCAGT---CA--C-CCCG-
*
17447186 CCGCCAGCTCGTTTCATCGGTTAGCTTAGGCGTACGGAGTTCATTCCTAGTCTAAGATCAGACCG
576 CCGCCAGCTCGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCG
** * *
17447251 AACTGAGGGTTGCAGCAGCAAGATCGGTAGCACGTAAAGGGGGACCCGGCCAATCCCCGACTTGC
641 AACTGAGGGTTGCAGCAGCAAGATCGGTAGCACACAAAGGGGGACCCGACCAATCCCCGACTTAC
* * * *
17447316 GCATCTCGCACCTCTGGGCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTCAACTTAGGCATACG
706 GCATCCCGCACCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTCAACTTAGGCATACG
* * * *
17447381 AAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGAGTTGTGACAGCACATGCTGGGTTCGGGC
771 AAGTTCATTCCCAGTCTAAGATCGGATCAGACCCAGACTTGTGACAGCAAATGCAGGGTTCGGGC
** *
17447446 ATGTGCTGGTGCCACATTTTTTCTTCGCTGGGGCAC
836 ACATGCTGGTG-C-C-----TTCTGCGCTGGGGCAC
* * * * * * * *
17447482 CGTCATCGGAGCATCATCGAAGAACCTAACCGGCGGCATTGGGGTTTCGACGATTGGGGGGGT-T
1 CATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGAGGGTCC
17447546 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
65 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-
* * * *
17447611 CCTCATCAAACCTCGAGAACTCACTCCCCTTTAAAGAGTATTTGAGATTTTACAGGTTTGTTGCC
129 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
17447676 ATTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
194 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
17447741 CAAGTTTTTAACTGAATTTTTTTATGCATGCCAACAAAAATACAAGGTTCACGTCTAGCAAGTTT
259 CGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
17447806 GGTGCC-AGAAATCCTT-TGGAAAAAATTTAAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATC
324 GGGGCCAAAAAAT-CTTCT-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* *
17447869 GTGAAAAATAGAAAACGAATCGTCTTGCAATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTA
387 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
17447933 TGAATTTACAAGCCATAAAAATGGCATTGGCA
452 TGAATTTACAAGCCATAAAAATGGCATTGGCA
17447965 TGTAGAATAT
Statistics
Matches: 2708, Mismatches: 281, Indels: 225
0.84 0.09 0.07
Matches are distributed among these distances:
853 38 0.01
855 1 0.00
857 5 0.00
859 4 0.00
861 1 0.00
863 65 0.02
864 373 0.14
865 239 0.09
866 327 0.12
867 208 0.08
868 36 0.01
869 10 0.00
870 7 0.00
871 13 0.00
872 10 0.00
873 10 0.00
874 16 0.01
875 4 0.00
876 7 0.00
877 4 0.00
878 222 0.08
879 149 0.06
880 261 0.10
881 2 0.00
888 1 0.00
889 1 0.00
890 1 0.00
891 4 0.00
892 129 0.05
893 2 0.00
896 33 0.01
897 172 0.06
898 119 0.04
899 189 0.07
901 1 0.00
902 1 0.00
903 39 0.01
904 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
CATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGTCCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAAAATCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCAATCCACGGCCTGCGCATCCCGTCTCTCTGGCCGACGCAGTCACCCCGCCGCCAGCTC
GTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGT
TGCAGCAGCAAGATCGGTAGCACACAAAGGGGGACCCGACCAATCCCCGACTTACGCATCCCGCA
CCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTCAACTTAGGCATACGAAGTTCATTC
CCAGTCTAAGATCGGATCAGACCCAGACTTGTGACAGCAAATGCAGGGTTCGGGCACATGCTGGT
GCCTTCTGCGCTGGGGCAC
Found at i:17451123 original size:26 final size:26
Alignment explanation
Indices: 17451094--17451146 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17451084 GTTGACTTAG
17451094 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
17451120 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
17451146 G
1 G
17451147 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:17451877 original size:26 final size:26
Alignment explanation
Indices: 17451843--17451893 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17451833 TGGCTTAGGC
*
17451843 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACAGAGTTCATTCCCAGTCTAAGG
* *
17451869 ATACAGAGTTCATTCTCGGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17451894 ATTGGATCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:17452229 original size:742 final size:746
Alignment explanation
Indices: 17451083--17452609 Score: 2291
Period size: 742 Copynumber: 2.1 Consensus size: 746
17451073 TCGTTTCGTG
* * *
17451083 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
* * *
17451148 TCAGATCAGATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTT
66 TCAGATCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGCTGGTACCACATTTTT
* * * * * *
17451213 CTTCATCGAGGCACCATTGTCGGAGCATTATCGGAGAACCTGACCGGTGGCATTGGGGTTCCAGC
131 CTTCATCGAGGCACCATCGTCGGAGCATCATCAGAGAACCTGACCAGCGGCATTGAGGTTCCAGC
* * *
17451278 GATCGGGGGGGCCGGGGGAGGGTGTGCACACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTA
196 GATCGGGGGGGCC-GAGGAGGGTGTGCACACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTA
* *
17451343 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATGTGAGATTT
260 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATGTGAGATTT
*
17451408 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
325 TACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
* *
17451473 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAAGATACAAGGAT
390 AAATCTTCTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAGAAAA-ATACAAGGAT
* * * *
17451537 CACGTCTACCAAGTTTTG-GGCCAAAACTCCATCCGTAAATATTTTAAAAAATCAT-GAACCGCA
454 CACGTCTACAAAG-TTTGAGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATC-TCGAACCGCA
* ** *
17451600 AAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTTA-AGG
517 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGACA-G
*
17451664 CTTAAGGGACCATTGTAAGAATTTACAAGCCACAAAAATGGCATTGGC-TCACAGAAATTTGAAG
581 CTTAAGGGACCATTGTAAGAATTTACAAGCCACAAAAATGGCATTGGCATCA-AGAAATATGAAG
*
17451728 ATGTGCCTAAACCCACCTACCACCCGATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGAC
645 ATGTGCCTAAACCCACCTACCACCCGATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGAC
* * **
17451793 GTAGTGCCCGCCTACCCGTCCGCCCACTCGGTTCATC
710 GTAGTACCCGCCCACCCACCCGCCCACTCGGTTCATC
* * *
17451830 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGATACAGAGTTCATTCTCGGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
** * * * * * *
17451895 TTGGATCGGACCGAGGGTTGCGGCAGTACATGTTAGGCTCAGGCATGTGCTGGTGCCGCATTTTT
66 TCAGATCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGCTGGTACCACATTTTT
* *
17451960 CTTCGTCGGGGCACCATCG-CTGGAGCATCATCAGAGAACCTGACCAGCGGCATTGAGGTTCCAG
131 CTTCATCGAGGCACCATCGTC-GGAGCATCATCAGAGAACCTGACCAGCGGCATTGAGGTTCCAG
* *
17452024 TGATC-GGGGGGCC-AGG-GGGTGTGCACACATGATGTGCGATGGCTGCTGGTACTTGGCTCTTA
195 CGATCGGGGGGGCCGAGGAGGGTGTGCACACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTA
*
17452086 TATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTT
260 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATGTGAGATTT
*
17452150 TACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
325 TACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
*
17452215 AAATCTTCTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAGAAAAATACAAGGATC
390 AAATCTTCTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAGAAAAATACAAGGATC
* * *
17452280 ACGTCTACAAAGTTTGAGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAA
455 ACGTCTACAAAGTTTGAGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAA
* *
17452345 AGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGACAGCTTC
520 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGACAGCTTA
* * *
17452410 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTG
585 AGGGACCATTGTAAGAATTTACAAGCCACAAAAATGGCATTGGCATCAAGAAATATGAAGATGTG
* *
17452475 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGT
650 CCTAAACCCACCTACCACCCGATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGT
* * * * **
17452540 ACCCGCCCGCCCACCCGCCCGCTTGTTTGGTC
715 ACCCGCCCACCCACCCGCCCACTCGGTTCATC
* *
17452572 AGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17452610 ATCAGACCGG
Statistics
Matches: 704, Mismatches: 70, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
741 5 0.01
742 463 0.66
743 54 0.08
744 2 0.00
746 9 0.01
747 171 0.24
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (746 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
TCAGATCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGCTGGTACCACATTTTT
CTTCATCGAGGCACCATCGTCGGAGCATCATCAGAGAACCTGACCAGCGGCATTGAGGTTCCAGC
GATCGGGGGGGCCGAGGAGGGTGTGCACACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATGTGAGATTTT
ACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTCTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAGAAAAATACAAGGATCA
CGTCTACAAAGTTTGAGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGACAGCTTAA
GGGACCATTGTAAGAATTTACAAGCCACAAAAATGGCATTGGCATCAAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCGATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTA
CCCGCCCACCCACCCGCCCACTCGGTTCATC
Found at i:17452771 original size:26 final size:26
Alignment explanation
Indices: 17452742--17452794 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17452732 GTTGACTTAG
17452742 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
17452768 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
17452794 G
1 G
17452795 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:17452891 original size:11 final size:11
Alignment explanation
Indices: 17452875--17452907 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
17452865 GTCGGGGCAC
17452875 CATCGCCGGAG
1 CATCGCCGGAG
17452886 CATCGCCGGAG
1 CATCGCCGGAG
*
17452897 CATCACCGGAG
1 CATCGCCGGAG
17452908 AACCGGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.36, G:0.33, T:0.09
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:17453691 original size:26 final size:25
Alignment explanation
Indices: 17453653--17453704 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17453643 GTTGACTTAG
17453653 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
*
17453678 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
17453704 G
1 G
17453705 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:17454578 original size:26 final size:26
Alignment explanation
Indices: 17454542--17454594 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17454532 TATGACTTAG
17454542 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17454568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17454594 G
1 G
17454595 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17454660 original size:890 final size:887
Alignment explanation
Indices: 17451830--17456577 Score: 5649
Period size: 913 Copynumber: 5.3 Consensus size: 887
17451820 TCGGTTCATC
* * * * *
17451830 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGATACAGAGTTCATTCTCGGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * * *
17451895 TTGGATCGGACCGAGGGTTGCGGCAGTACATGTTAGGCTC-AGGCATGTGCTGGTGCCGCATTTT
66 TCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGTATTTT
* *
17451959 TCTTCGTCGGGGCACCATCGCTGGAGCATCATCAGAGAACCTGACCAG-CGGCATTGAGGTTCC-
130 TCTTCGTCGGGGCACCAT--C--G-G----ATCGGAGAACCTGA-CAGACGGCATTGGGGTTCCG
* * * *
17452022 AGTGATCGGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGCTGCTGGTACTTGGCTCTTAT
185 A-CGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
17452087 ATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTT
249 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
17452151 ACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
314 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
17452216 AATCTTCTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAGAAAAATACAAGGATCA
379 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * *
17452281 CGTCTACAAAGTTTGAGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
444 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
* * *
17452346 GTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGACA-GCTTC
509 GTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA-AGGCTTA
* *
17452410 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTG
573 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* *
17452475 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGT
638 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * *
17452540 ACCCGCCCGCCCACCCGCCCGCTTGTTTGGTC-AGTTGGGTTAGGCATACGGAGTTCATTCCCAG
703 ----G-CCGCCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * *
17452604 TCTAAGATCAGACCGGACCAAGGGTTGCGATAGCAGGATCGACAGCATGCAGAGGGGGACCTGAC
762 TCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC
* * * * *
17452669 CGATCCTCGGCTTGCGCATCCCGCCCCTTTGGCCGGTTGAGCACCTGCATGCTCGTTTCGT
827 CGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGT
*
17452730 GGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
1 -GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * **
17452795 ATCGGACCGAACCGAGGGTTGCGGTAGCACATG-TCGGGCTTGGGCATGTGCTGGTGCCACATTT
65 ATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT-GGGCTCGAGCATGTGCTGGTGCCGTATTT
*
17452859 TTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGCATCACCGGAGAACCGGACCGACGGCA
129 TTCTTCGTCGGGGCACCAT---C-G-G-AT---CGGAG-A--ACC--TG-A-C--A--GACGGCA
** * * *
17452924 TTGGGGTTTTGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAC
174 TTGGGGTTCCGACGATCGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
17452989 TTGGCCCTTATATT-GCCCCCTATCCATCATCAAACCTCCATAACTCACACCCCCTTAAAGATCA
238 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
17453053 TTTGAGATTTTACAGGTATGCTGCCAGTAACCATTAAAGTATCTGAAATGGAGACACTTTTTTCA
303 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
17453118 AATGGTCACAAAATATTGTACACTTCGAGATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
368 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
17453183 TACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATC-CA
433 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-
* * *
17453247 AAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAAGGAGTCATCTTGCCATGAAACTTCAC
497 GAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
17453312 ATGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
562 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * *
17453377 ATGAAGATGTGCCCAAA-CCACCTA-CACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTTTG
627 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
17453440 GCTGGCGTGGCGTCCGCCCGCCCGCCCGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATACGGAGT
692 GCCGGCGT--AGT--G-CCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGT
* * * * *
17453505 TCATTCCCAGTCTAAGATTGAACCGGACTGAAGGTTAC-AGCAGCAGGATCGGCAGCACGCAGAG
752 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCAGGATCGGCAGCACGCAGAG
** * * * *
17453569 GGGGACCCGGTCGATCCCCAGCATGTGCATCCCGCCCCTCTGGCCGGTTGAGCACCCACACGCTC
816 GGGGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTC
17453634 GTTTCGT
881 GTTTCGT
*
17453641 GGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAG
1 -GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
17453705 ATCAGATCGGATCGAAGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTT
65 ATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTT
* *
17453770 TCTTCGTTGGGGCACCATC-G-TCGGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGAGG
130 TCTTCGTCGGGGCACCATCGGATCGGAGAACCTGACAGACGGCATTGGGGTTCCGACGATCG-GG
17453833 GGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
194 GGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
17453898 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
258 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
17453963 CTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
323 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
17454028 CACTTTGATTTTTTAGCTGAATTTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
388 CACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
17454093 AAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
452 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
* * * * *
17454158 AATTATGAAAAATAGAAAACGATTCGTCTTGTCGTGAAACTTCATGTGAAGGCTTAAGGGACCAT
517 AATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
17454223 TGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
582 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* *
17454288 ACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCAGCCCG
647 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCG
* * *
17454353 CCTGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
711 CCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * *
17454418 AGACCGAGTGTTGCGACAGCAGGATCGGTAGCACGCAAAGGGGGACCCAACCGATCCCCGGTTTG
776 GGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * *
17454483 AGCATCCCACCCCTCTGGCCGATTGAGCTCCCGCACGCTCATTTCGT
841 AGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGT
17454530 GGTATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
1 GGT-TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * * *
17454595 ATCAGACCGGATCGAGGGTTGCAACAACACATGCTAGGCTCGAGCATGTGGTGGTGCCATATTTT
65 ATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTT
* *
17454660 TCTTCGTCGGGGCACAATCACCGGAGCATCACCGGAGAACCTGACTGACGGGCATTGGGGTTCCG
130 TCTTCGTCGGGGCAC---CATC-G-G-AT---CGGAGAACCTGACAGAC-GGCATTGGGGTTCCG
* * * * *
17454725 ACGATCGGGGGGGTCGGGGGGTTGTGCGCACAGGATATGCGATGGGTGCTGGTACTTGGCCCTTG
185 ACGATC-GGGGGGCCAGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
17454790 CATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGCGCATTTGAGATTT
248 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
17454855 TACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
313 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * ** *
17454920 AAATCTTGTACACTTCGAGTTTTTAGTTGAA-TTTTTTATGCAAACGAACAAAAATACAAGGATC
378 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
17454984 ACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTAAAA
443 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAA
* ** * * *
17455049 ATTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA-GTTTA
508 AGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* ** *
17455113 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCTTGTAGAAATATGAAGATGTG
573 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* **
17455178 CCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCG-ATCCCGTCTCTCTGGCTAGCGTAGT
638 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * **
17455242 -------GCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAG
703 GCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
17455300 ATCGGATCAGATCGGATCAAGGGTTGTGGCAGTAGGATCGACAGCACGCAGAGGGAGACCCGACC
768 ATCGGA-C----CGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
* * * * *
17455365 GATCCCCGGCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGCCCGCACGCTCGTTTCGT
828 GATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGT
17455425 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A-T--C-G-----G
1 -GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * **
17455474 AT----------CGAGGGTTGCGGTAGCACATGCTGGTGC-C-A-CATTTTTCT--TCACCG-GG
65 ATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG-GCTCGAGCA-TGTGCTGGT-GCCGTAT
**** * * * * * ** *
17455523 GCACCATCGTC--GG-AGCATC--ACCGGAGAACCTGACCGGCGGCATTACGGTTCTGACGATCG
127 TTTTCTTCGTCGGGGCACCATCGGATCGGAGAACCTGACAGACGGCATTGGGGTTCCGACGATCG
* ** * * *
17455583 GGGGGGCAGGGGGTGCACGCACATGATGTACGATGGATGTTGGTACTTGGCCCTTATATTGGCCC
192 GGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
17455648 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAAGTTT
257 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
17455713 G-TGGCCAGTAGCCATTGAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
322 GCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
17455777 TACACTTCGAGTTTTTAGCT-AAATTATTT-TG--TG--------AATACAAGGATCACGTCTAC
386 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* **
17455830 CAAGTTTGGGGCCAAAACTCCTTCCGAAAGAA-TTTAAAAAATCTCGAACCGTAAAAAGTTTTGA
451 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAA
* * *
17455894 AAGTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCA
516 AAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
17455959 TTGTATGAATCTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACC
581 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * * * *
17456024 TACCTACCACCCTATTGATCCACGACTTGCGCATCCCGACTCTTTGGCCGGCGTAGTGCTCGGCC
646 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGCCC
* * *
17456089 GCCCGCCCACTCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTGCATTCCCATTCTAAGATC
710 GCCCG--C-C-CGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * **
17456154 GGATCGGACCGAGGGTTGTGGCAGCATGATCGGCAGCATGCAGAAAGGGACCCGACCGATCCCCG
771 GGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * *
17456219 ACTT-ACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTTGTTTCGT
836 GCTTGA-GCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGT
** * *
17456271 GGATTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAG
1 GG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
17456336 ATCGGACCGGACCGAGGGTTGCGGTAGTACATACTGGGCTCGGGCATGTGCTAGTG-CGTATTTT
65 ATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTT
* * * *
17456400 TCTTCGTCGGGGCACCATCGTCGTAGCATCGCCGAAGACCCTAACCGACGGCATTGGGGTTCCAA
130 TCTTCGTCGGGGCACCA---TCG--G-ATCG--G-AGAACCTGACAGACGGCATTGGGGTTCCGA
* *
17456465 CGATCGGGGGGGCTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
186 CGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * *
17456530 TGGCCCCTTATCCCTCATCAAACCTTGAGAACTAACA-ACCCTTAAAGA
251 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
17456578 TATAATAAGA
Statistics
Matches: 3332, Mismatches: 392, Indels: 260
0.84 0.10 0.07
Matches are distributed among these distances:
837 76 0.02
838 146 0.04
839 21 0.01
845 2 0.00
846 132 0.04
847 7 0.00
848 6 0.00
849 187 0.06
850 15 0.00
851 68 0.02
852 15 0.00
853 1 0.00
854 1 0.00
855 1 0.00
857 1 0.00
860 3 0.00
862 3 0.00
863 1 0.00
864 2 0.00
866 7 0.00
867 4 0.00
868 4 0.00
869 21 0.01
870 2 0.00
871 2 0.00
872 24 0.01
873 6 0.00
874 8 0.00
875 1 0.00
876 2 0.00
877 3 0.00
879 3 0.00
880 2 0.00
884 1 0.00
885 4 0.00
887 11 0.00
888 143 0.04
889 229 0.07
890 315 0.09
891 218 0.07
892 9 0.00
893 47 0.01
894 3 0.00
895 127 0.04
896 7 0.00
898 27 0.01
899 107 0.03
900 139 0.04
901 157 0.05
902 223 0.07
903 1 0.00
904 4 0.00
906 1 0.00
907 4 0.00
909 1 0.00
910 115 0.03
911 221 0.07
912 33 0.01
913 408 0.12
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTT
CTTCGTCGGGGCACCATCGGATCGGAGAACCTGACAGACGGCATTGGGGTTCCGACGATCGGGGG
GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATT
GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGC
CCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
GAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGAGCAT
CCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGT
Found at i:17457128 original size:20 final size:19
Alignment explanation
Indices: 17457103--17457208 Score: 68
Period size: 21 Copynumber: 4.9 Consensus size: 19
17457093 ATGAAAATAT
*
17457103 AAATAAAGAAAGAAACAAAA
1 AAATAAAAAAAGAAA-AAAA
17457123 AAATAAAAAAAGAAAAAAA
1 AAATAAAAAAAGAAAAAAA
* * *
17457142 TATTAAAGCAAAACAAAAATTATA
1 AAATAAA--AAAAGAAAAA--A-A
17457166 AAATAAAAAAGTAAGAAAATAAA
1 AAAT-AAAAA--AAGAAAA-AAA
17457189 AAATTAAAAAAAGACAAAAA
1 AAA-TAAAAAAAGA-AAAAA
17457209 TGAAATGAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 21
0.71 0.07 0.22
Matches are distributed among these distances:
19 9 0.13
20 14 0.21
21 15 0.22
22 3 0.04
23 12 0.18
24 5 0.07
25 9 0.13
26 1 0.01
ACGTcount: A:0.77, C:0.04, G:0.07, T:0.12
Consensus pattern (19 bp):
AAATAAAAAAAGAAAAAAA
Found at i:17457132 original size:8 final size:8
Alignment explanation
Indices: 17457096--17457200 Score: 59
Period size: 8 Copynumber: 12.8 Consensus size: 8
17457086 AAAATTTATG
*
17457096 AAAATATA
1 AAAAAATA
* *
17457104 AATAAAGA
1 AAAAAATA
* *
17457112 AAGAAACA
1 AAAAAATA
17457120 AAAAAATA
1 AAAAAATA
*
17457128 AAAAAAGA
1 AAAAAATA
17457136 AAAAAATA
1 AAAAAATA
17457144 TTAAAGCAAA-A
1 --AAA--AAATA
* *
17457155 CAAAAATT
1 AAAAAATA
*
17457163 ATAAAATA
1 AAAAAATA
*
17457171 AAAAAGTA
1 AAAAAATA
*
17457179 AGAAAATA
1 AAAAAATA
*
17457187 AAAAATTA
1 AAAAAATA
17457195 AAAAAA
1 AAAAAA
17457201 GACAAAAATG
Statistics
Matches: 71, Mismatches: 21, Indels: 10
0.70 0.21 0.10
Matches are distributed among these distances:
7 3 0.04
8 59 0.83
9 2 0.03
10 3 0.04
11 1 0.01
12 3 0.04
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.14
Consensus pattern (8 bp):
AAAAAATA
Found at i:17457632 original size:15 final size:15
Alignment explanation
Indices: 17457602--17457657 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
17457592 AAAAATTTAT
*
17457602 GAAAATATAAATAAA
1 GAAAAAATAAATAAA
17457617 GAAAGAAATAAA-AAA
1 GAAA-AAATAAATAAA
*
17457632 GAAAAAAT-ATTAAA
1 GAAAAAATAAATAAA
17457646 GCAAAAAA-AAAT
1 G-AAAAAATAAAT
17457658 TATAATTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
13 1 0.03
14 8 0.24
15 19 0.56
16 6 0.18
ACGTcount: A:0.75, C:0.02, G:0.09, T:0.14
Consensus pattern (15 bp):
GAAAAAATAAATAAA
Found at i:17457737 original size:7 final size:7
Alignment explanation
Indices: 17457672--17457737 Score: 60
Period size: 7 Copynumber: 9.3 Consensus size: 7
17457662 ATTAAAATAC
17457672 AATAAAA
1 AATAAAA
*
17457679 TATAAAA
1 AATAAAA
*
17457686 TATAAAA
1 AATAAAA
*
17457693 AGTAAGAA
1 AATAA-AA
*
17457701 AATCAAA
1 AATAAAA
**
17457708 AATAATG
1 AATAAAA
*
17457715 AATCAAA
1 AATAAAA
17457722 AATAAAA
1 AATAAAA
17457729 AATAAAA
1 AATAAAA
17457736 AA
1 AA
17457738 GACAAAAATG
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
7 41 0.89
8 5 0.11
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (7 bp):
AATAAAA
Found at i:17458612 original size:18 final size:17
Alignment explanation
Indices: 17458585--17458629 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
17458575 AAGTTAATGC
*
17458585 AAAATAAAAATGAAAACGA
1 AAAAAAAAAATG-AAAC-A
*
17458604 AAAAAAAAAATGCAACA
1 AAAAAAAAAATGAAACA
17458621 AAAAAAAAA
1 AAAAAAAAA
17458630 CTATAAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 10 0.42
18 3 0.12
19 11 0.46
ACGTcount: A:0.80, C:0.07, G:0.07, T:0.07
Consensus pattern (17 bp):
AAAAAAAAAATGAAACA
Found at i:17459201 original size:7 final size:7
Alignment explanation
Indices: 17459136--17459201 Score: 60
Period size: 7 Copynumber: 9.3 Consensus size: 7
17459126 ATTAAAATAC
17459136 AATAAAA
1 AATAAAA
*
17459143 TATAAAA
1 AATAAAA
*
17459150 TATAAAA
1 AATAAAA
*
17459157 AGTAAGAA
1 AATAA-AA
*
17459165 AATCAAA
1 AATAAAA
**
17459172 AATAATG
1 AATAAAA
*
17459179 AATCAAA
1 AATAAAA
17459186 AATAAAA
1 AATAAAA
17459193 AATAAAA
1 AATAAAA
17459200 AA
1 AA
17459202 AGACAAAAAT
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
7 41 0.89
8 5 0.11
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (7 bp):
AATAAAA
Found at i:17459840 original size:15 final size:15
Alignment explanation
Indices: 17459810--17459861 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
17459800 AAAAATTTAT
*
17459810 GAAAATATAAATAAA
1 GAAAAAATAAATAAA
17459825 GAAAGAAATAAA-AAA
1 GAAA-AAATAAATAAA
*
17459840 GAAAAAAT-ATTAAA
1 GAAAAAATAAATAAA
17459854 GCAAAAAA
1 G-AAAAAA
17459862 AATTATAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 1 0.03
14 8 0.25
15 17 0.53
16 6 0.19
ACGTcount: A:0.75, C:0.02, G:0.10, T:0.13
Consensus pattern (15 bp):
GAAAAAATAAATAAA
Found at i:17459944 original size:7 final size:7
Alignment explanation
Indices: 17459879--17459944 Score: 60
Period size: 7 Copynumber: 9.3 Consensus size: 7
17459869 ATTAAAATAC
17459879 AATAAAA
1 AATAAAA
*
17459886 TATAAAA
1 AATAAAA
*
17459893 TATAAAA
1 AATAAAA
*
17459900 AGTAAGAA
1 AATAA-AA
*
17459908 AATCAAA
1 AATAAAA
**
17459915 AATAATG
1 AATAAAA
*
17459922 AATCAAA
1 AATAAAA
17459929 AATAAAA
1 AATAAAA
17459936 AATAAAA
1 AATAAAA
17459943 AA
1 AA
17459945 AGACAAAAAT
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
7 41 0.89
8 5 0.11
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (7 bp):
AATAAAA
Found at i:17460548 original size:741 final size:751
Alignment explanation
Indices: 17457320--17460638 Score: 5604
Period size: 741 Copynumber: 4.5 Consensus size: 751
17457310 AATGCAAAAT
17457320 AAAAATTAGAAAAACAAGAAAAAATAAAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAA
1 AAAAATTAGAAAAACAAGAAAAAAT--AAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAA
*
17457385 AGAAAAAATGTTTTGTTGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAA
64 AGAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAA
* * *
17457450 AGCACATGAAAAAAATAAGG-AAAAAAAAGGAAAAATTTAAAAGGAAAATGAGTTAAAGAAAAAT
129 AGCACATGAAAAAAATAAGGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAAT
17457514 TATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATTAAAAAAA
194 TATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAA-T-AAAAAA
17457579 TCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTA
257 TCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTA
17457644 AAGCAAAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAAA
322 AAGCAAAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAAA
17457709 ATAATGAATCAAAAATAAAAAAT-AAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAA
387 ATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAA
*
17457773 ATATTTTAAAAAATACAAAAAATTGAAAAACATATACGATATAATAAGAAAACAATATAAAAATT
452 ATATTTTAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
*
17457838 CAAAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAA
517 CAAAGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAA
17457903 TGCAAC-AAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAA
582 TGCAACAAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAA
17457967 AATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGA--T-T-----------T-------A---TG
647 AATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATCCAAGGAAGTGTG
17458008 AAAAAAAAATGGAAACAAGAAACAAAAAGAATTTTGCGAA
712 AAAAAAAAATGGAAACAAGAAACAAAAAGAATTTTGCGAA
17458048 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGC-AAAATATGAAATAAAAT-AAAAG
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
*
17458111 AAAAAATGTTTT-TAGAAATTTTTTAAAACAAAGAAAAAAAGTG-AAACAATAGAAAATATGAAA
66 AAAAAATGTTTTGTAGAAA-TTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAA
17458174 GCACATGAAAAAAATAAGG-AAAAAAAAAGAAAAATTTAAAAGG-AAAAGAGTTAATG-AAAATT
130 GCACATGAAAAAAATAAGGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATT
17458236 AT--AAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAGAAAAGAAAAATAAAAAAATC
195 ATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAAT-AAAAAATC
* *
17458298 C-AAACAATTATAAAAATTTATG-AAATATAAATAAAGAAAGAAATAAAGAAGCAAAAATATTAA
259 CAAAAC-ATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAA
17458361 AGCAAAAAAAAATTATAATTAAAATAC-ATAAAATAATAAAATATAAAAAGTAAGAAAATC-AAA
323 AGCAAAAAAAAATTATAATTAAAATACAATAAAAT-ATAAAATATAAAAAGTAAGAAAATCAAAA
17458424 ATAATGAATC-AAAATAAAAAATAAAAAAAGAC-AAAATGAAATGAAATGAGAAAAT-GAAAAAA
387 ATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAA
17458486 ATATTTTAAAAAATAC-AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
452 ATATTTTAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATT
* *
17458550 CAAAGAC-AAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAAAAAA
517 CAAAGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAA
*
17458614 TGCAACAAAAAAAAAACTATAAGAATTTAAAAATG--AA-AAAAAATAAAAA-AAAATTGTGAAA
582 TGCAAC-AAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAA
* *
17458675 AAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGGTTTACGAAAAAAAAAATCCAAGGAAGTGT
646 AAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATCCAAGGAAGTGT
*
17458740 GAAAAAAAAAAATGGAAACAA-AAAAAAAAAGAATTTTGCGAA
711 G--AAAAAAAAATGGAAACAAGAAACAAAAAGAATTTTGCGAA
*
17458782 AAAAATTAGAAAAATAAAGAAAAAATTAAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAA
1 AAAAATTAGAAAAA-CAAGAAAAAA-T-AAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAA
17458847 AAGAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGA
63 AAGAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGA
17458912 AAGCACATGAAAAAAATAAGGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAA
128 AAGCACATGAAAAAAATAAGGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAA
17458977 TTATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATATAAAAA
193 TTATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATA-AAAAA
17459042 TCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAGAAAAATATT
257 TCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGA-AAAAATATT
17459107 AAAGCAAAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAA
321 AAAGCAAAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAA
*
17459172 AATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAACAA
386 AATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAA-AA
* * * * *
17459237 AAATATTTGAAAAAAAACAAAAAATTTAAAAGCATATAAGATATAATAAGAAAACAATATAAAAT
450 AAATATTTTAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAA
17459302 TTCAAAGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACGAAAAAAGAA
515 TTCAAAGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACGAAAAAAGAA
17459367 AATGCAACAAAAAAAACACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTG-
580 AATGCAACAAAAAAAA-ACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGA
17459431 AAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATG-AAAAAAAAATCCAAGGAAGT
644 AAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATCCAAGGAAGT
*
17459495 GTG--AAAAAAATGGAAACAAGAAACAAAAAGAATTTTGCAAA
709 GTGAAAAAAAAATGGAAACAAGAAACAAAAAGAATTTTGCGAA
17459536 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAAT-AAATAAAAAG
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
17459600 -AAAAATGTTTTGTAGAAA-TTTTAAAACAAAG-AAAAAAGTGAAAACAAAAGAAAATATGAAAG
66 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
*
17459662 CACATGAAAAAAATAAGGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAAAGTTAATGAAAAATTA
131 CACATGAAAAAAATAAGGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
17459727 TAAAAATACAATAGAAAATAAGAAAC--CGATAAATAAAAAAAGAAAAGAAAAACTAAAAAATCC
196 TAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAA-TAAAAAATCC
17459790 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAG
260 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAG
17459855 C-AAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAAAATA
325 CAAAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAAAATA
17459919 ATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATA
390 ATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATA
17459984 TTTTAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAA
455 TTTTAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAA
*
17460049 AGACAAAAAATT-AAAAAGAGAAAAATTAATGCAAGATAAAAATGAAAACGAAAAAAGAAAATGC
520 AGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGC
*
17460113 AACAAAAAATGAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAA
585 AACAAAAAA-AAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAA
*
17460178 TTAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATCCAAGGAAGTGTG
649 TTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATG-AAAA-AAAAAATCCAAGGAAGTGTG
*
17460243 AAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGC-AA
712 AAAAAAAAATGGAAACAAGAAACAAAAAGAATTTTGCGAA
17460282 AAAAATTAGAAAAACAAGAAAAAAT-AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
17460346 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
66 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
*
17460411 CACATG-AAAAAATAA-G-TAAAAAAAAGAAAAATTTAAAAGG-AAAAGAGTTAATG-AAAATTA
131 CACATGAAAAAAATAAGGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
17460471 TAAAAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAG-AAAG-AAAA-AAAAAATCCA
196 TAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAATCCA
17460532 AAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAGC
261 AAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAGC
* *
17460597 AAAACAAAAATAAATAAATAAAATA-AATAAAA-ATAAAA-ATAA
326 AAAA-AAAAAT-TATAATTAAAATACAATAAAATATAAAATATAA
17460639 GACAAAAAAA
Statistics
Matches: 2465, Mismatches: 46, Indels: 147
0.93 0.02 0.06
Matches are distributed among these distances:
709 46 0.02
710 12 0.00
711 65 0.03
712 54 0.02
713 50 0.02
714 35 0.01
715 29 0.01
716 95 0.04
717 27 0.01
718 17 0.01
719 33 0.01
721 8 0.00
722 11 0.00
723 67 0.03
724 41 0.02
725 17 0.01
726 16 0.01
728 25 0.01
730 1 0.00
733 2 0.00
734 34 0.01
735 27 0.01
736 1 0.00
737 16 0.01
738 17 0.01
739 41 0.02
740 44 0.02
741 210 0.09
742 145 0.06
743 145 0.06
744 65 0.03
745 187 0.08
746 112 0.05
747 206 0.08
748 98 0.04
749 75 0.03
750 32 0.01
751 51 0.02
752 4 0.00
753 43 0.02
754 93 0.04
755 81 0.03
757 25 0.01
758 54 0.02
759 8 0.00
ACGTcount: A:0.68, C:0.04, G:0.10, T:0.17
Consensus pattern (751 bp):
AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
CACATGAAAAAAATAAGGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
TAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAATCCA
AAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAGC
AAAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAAAATAA
TGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATAT
TTTAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAA
GACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCA
ACAAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATT
AAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATCCAAGGAAGTGTGAAAA
AAAAATGGAAACAAGAAACAAAAAGAATTTTGCGAA
Found at i:17460574 original size:18 final size:16
Alignment explanation
Indices: 17460552--17460590 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
17460542 AAAATTTATG
17460552 AAAATATAAATAAAGAA
1 AAAATATAAA-AAAGAA
*
17460569 AGAA-ATAAAAAAGAA
1 AAAATATAAAAAAGAA
17460584 AAAATAT
1 AAAATAT
17460591 TAAAGCAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
15 9 0.47
16 7 0.37
17 3 0.16
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (16 bp):
AAAATATAAAAAAGAA
Found at i:17460581 original size:15 final size:15
Alignment explanation
Indices: 17460551--17460684 Score: 71
Period size: 16 Copynumber: 8.6 Consensus size: 15
17460541 AAAAATTTAT
*
17460551 GAAAATATAAATAAA
1 GAAAAAATAAATAAA
17460566 GAAAGAAATAAA-AAA
1 GAAA-AAATAAATAAA
*
17460581 GAAAAAAT-ATTAAA
1 GAAAAAATAAATAAA
17460595 GCAAAACAA-AAATAAA
1 G-AAAA-AATAAATAAA
*
17460611 TAAATAAAATAAATAAA
1 -GAA-AAAATAAATAAA
* * *
17460628 AATAAAAAT-AAGACA
1 GA-AAAAATAAATAAA
*
17460643 -AAAAAATAAAAAAA
1 GAAAAAATAAATAAA
17460657 GACAAAAATGAAATGAAA
1 GA-AAAAAT-AAAT-AAA
*
17460675 CGAGAAAATA
1 -GAAAAAATA
17460685 GAAAAAAATA
Statistics
Matches: 94, Mismatches: 10, Indels: 28
0.71 0.08 0.21
Matches are distributed among these distances:
13 7 0.07
14 13 0.14
15 20 0.21
16 30 0.32
17 14 0.15
18 8 0.09
19 2 0.02
ACGTcount: A:0.75, C:0.04, G:0.08, T:0.13
Consensus pattern (15 bp):
GAAAAAATAAATAAA
Found at i:17460595 original size:14 final size:14
Alignment explanation
Indices: 17460560--17460629 Score: 52
Period size: 15 Copynumber: 4.9 Consensus size: 14
17460550 TGAAAATATA
17460560 AATAAAGAAAGAAAT
1 AATAAAGAAA-AAAT
*
17460575 AAAAAAGAAAAAAT
1 AATAAAGAAAAAAT
* *
17460589 ATTAAAGCAAAACAAA
1 AATAAAG-AAAA-AAT
* *
17460605 AATAAATAAATAA-
1 AATAAAGAAAAAAT
*
17460618 AATAAATAAAAA
1 AATAAAGAAAAA
17460630 TAAAAATAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
13 11 0.24
14 11 0.24
15 16 0.36
16 7 0.16
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.14
Consensus pattern (14 bp):
AATAAAGAAAAAAT
Found at i:17460623 original size:29 final size:27
Alignment explanation
Indices: 17460597--17460670 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 27
17460587 ATATTAAAGC
17460597 AAAACAAAAATAAATAAATAAAATAAATA
1 AAAACAAAAATAAATAAA-AAAATAAA-A
* *
17460626 AAAATAAAAATAAGACAAAAAAATAAAA
1 AAAACAAAAATAA-ATAAAAAAATAAAA
17460654 AAAGACAAAAATGAAAT
1 AAA-ACAAAAAT-AAAT
17460671 GAAACGAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
28 4 0.11
29 28 0.74
30 6 0.16
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.14
Consensus pattern (27 bp):
AAAACAAAAATAAATAAAAAAATAAAA
Found at i:17460653 original size:18 final size:18
Alignment explanation
Indices: 17460612--17460664 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
17460602 AAAAATAAAT
*
17460612 AAATAAAATAA-ATAAAA
1 AAATAAAATAAGACAAAA
*
17460629 ATA-AAAATAAGACAAAA
1 AAATAAAATAAGACAAAA
*
17460646 AAATAAAAAAAGACAAAA
1 AAATAAAATAAGACAAAA
17460664 A
1 A
17460665 TGAAATGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 7 0.23
17 9 0.30
18 14 0.47
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.11
Consensus pattern (18 bp):
AAATAAAATAAGACAAAA
Found at i:17460901 original size:741 final size:738
Alignment explanation
Indices: 17457320--17468594 Score: 13758
Period size: 747 Copynumber: 15.4 Consensus size: 738
17457310 AATGCAAAAT
17457320 AAAAATTAGAAAAACAAGAAAAAATAAAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAA
1 AAAAATTAGAAAAACAAGAAAAAAT--AAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAA
*
17457385 AGAAAAAATGTTTTGTTGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAA
64 AGAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAA
* * *
17457450 AGCACATGAAAAAAATAAGGAAAAAAAAGGAAAAATTTAAAAGGAAAATGAGTTAAAGAAAAATT
129 AGCACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATT
17457515 ATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATTAAAAAAAT
194 ATAAAAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAGAAAAG-AAAA--AAAAAAAT
17457580 CCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAA
255 CCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAA
*
17457645 AGCAAAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAAAA
320 AGC-------AA--A-AA--AAAATACAAT-AAATATAAAATAT-AAAA-TAA-AAAATAAAAAA
17457710 TAATGAATCAAAAATAAAAAAT-AAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAA
369 TAATGAATC---AATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAA
*
17457774 TATTTTAAAAAATACAAAAAATTGAAAAACATATACGATATAATAAGAAAACAATATAAAAATTC
431 TATTTTAAAAAATAC-AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTC
17457839 AAAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAAT
495 AAAGAC-AAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAAT
*
17457904 GCAACAAAAAAAAC-T--AT--AAG--AAT-TTAAAAA--TG-AAAA-T--AAAAAATAAAAAGA
559 GCAACAAAAAAAACATGAATAAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGA
17457955 AATTTGTGAAAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGA--T-T-----------T-
624 AATTTGTG-AAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATC
*
17458005 ------A---TGAAAAAAAAATGGAAACAAGAAACAAAAAGAATTTTGCGAA
688 CAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGC-AA
17458048 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGC-AAAATATGAAATAAAAT-AAAAG
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
*
17458111 AAAAAATGTTTT-TAGAAATTTTTTAAAACAAAGAAAAAAAGTG-AAACAATAGAAAATATGAAA
66 AAAAAATGTTTTGTAGAAA-TTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAA
17458174 GCACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGG-AAAAGAGTTAATG-AAAATTA
130 GCACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
17458237 T--AAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAGAAAAGAAAAATAAAAAAATCC-
195 TAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAGAAAAG-AAAA-AAAAAAATCCA
* *
17458299 AAACAATTATAAAAATTTATG-AAATATAAATAAAGAAAGAAATAAAGAAGCAAAAATATTAAAG
258 AAAC-ATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAG
*
17458363 CAAAAAAAAATTATAATTAAAATACATAAAATAATAAAATATAAAAAGTAAGAAAATCAAAATAA
322 CAAAAAAAAA-TACAA-T-AAAT--ATAAAAT-ATAAAATA-AAAAA-T-----AA--AAAATAA
17458428 TGAATCAAAATAAAAAATAAAAAAAGAC-AAAATGAAATGAAATGAGAAAAT-GAAAAAAATATT
372 TGAATC--AATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATT
17458491 TTAAAAAATACAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGA
435 TTAAAAAATACAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGA
*
17458556 CAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAAAAAATG---C-
500 CAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACA
* * * *
17458617 -----AACA--AA-AAAA-AAACTAT-AAGAATTT-AAAAATGAAAAAAAATAAAAA-AAAATTG
565 AAAAAAACATGAATAAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAAATTTG
* *
17458670 TGAAAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGGTTTACGAAAAAAAAAATCCAAGGA
630 TG-AAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATCCAAGGA
*
17458735 AGTGTGAAAAAAAAAAATGGAAACAA-AAAAAAAAAGAATTTTGCGAA
694 AGTGTG--AAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGC-AA
*
17458782 AAAAATTAGAAAAATAAAGAAAAAATTAAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAA
1 AAAAATTAGAAAAA-CAAGAAAAAA-T-AAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAA
17458847 AAGAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGA
63 AAGAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGA
17458912 AAGCACATGAAAAAAATAAGGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAA
128 AAGCACATGAAAAAAATAAGG-AAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAA
17458977 TTATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATATAAAAA
192 TTATAAAAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAGAAAAGAAAAA-A-AAAAA
17459042 TCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAGAAAAATATT
254 TCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGA-AAAAATATT
*
17459107 AAAGCAAAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAA
318 AAAGC-------AA--A-AA--AAAATACAAT-AAATATAAAATAT-AAAA-TAA-AAAATAAAA
*
17459172 AATAATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAACAA
367 AATAATGAATC---AATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAA-AA
* * * * *
17459237 AAATATTTGAAAAAAAACAAAAAATTTAAAAGCATATAAGATATAATAAGAAAACAATATAAAAT
428 AAATATTTTAAAAAATAC-AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAA
*
17459302 TTCAAAGACAAAAAATTAAAAAAGAGAAAAATTAATGCAAAATAAAAATGAAAACGAAAAAAGAA
492 TTCAAAGAC-AAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAA
*
17459367 AATGCAACAAAAAAAACACT--AT--AAG--AAT-TTAAAAA--TG-AAAA-T--AAAAAATAAA
556 AATGCAACAAAAAAAACA-TGAATAAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAA
17459419 AAGAAATTTGTGAAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATG-AAAAAAAA
620 AAGAAATTTGTGAAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAA
*
17459483 ATCCAAGGAAGTGTG--AAAAAAATGGAAACAAGAAACAAAAAGAATTTTGCAAA
685 ATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGC-AA
17459536 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAAT-AAATAAAAAG
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
17459600 -AAAAATGTTTTGTAGAAA-TTTTAAAACAAAG-AAAAAAGTGAAAACAAAAGAAAATATGAAAG
66 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
*
17459662 CACATGAAAAAAATAAGGAAAAAAAAAAGAAAAATTTAAAAGGAAAAAAAGTTAATGAAAAATTA
131 CACATGAAAAAAATAAGG-AAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
17459727 TAAAAATACAATAGAAAATAAGAAAC--CGATAAATAAAAAAAGAAAAGAAAAACTAAAAAATCC
195 TAAAAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAGAAAAGAAAAA--AAAAAATCC
17459790 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAG
257 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAG
*
17459855 CAAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAAAATAA
322 C------AA--A-AA--AAAATACAAT-AAATATAAAATAT-AAAA-TAA-AAAATAAAAAATAA
17459920 TGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATAT
372 TGAATC---AATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATAT
17459985 TTTAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAA
434 TTTAAAAAATAC-AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAA
* *
17460050 GACAAAAAATT-AAAAAGAGAAAAATTAATGCAAGATAAAAATGAAAACGAAAAAAGAAAATGCA
498 GAC-AAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCA
* *
17460114 AC---AAAAA-ATGAACTATAAG--AAT-TTAAAAA--TG-AAAA-T--AAAAAATAAAAAGAAA
562 ACAAAAAAAACATGAA-TAAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAAA
*
17460166 TTTGTGAAAAAATTAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATC
626 TTTGTG-AAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATG-AAAA-AAAAAATC
17460231 CAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCAA
688 CAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCAA
17460282 AAAAATTAGAAAAACAAGAAAAAAT-AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
17460346 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
66 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
*
17460411 CACATG-AAAAAATAA-GTAAAAAAAAGAAAAATTTAAAAGG-AAAAGAGTTAATG-AAAATTAT
131 CACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTAT
17460472 AAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAG-AAAG-AAAAAAAAAATCCAAAA
196 AAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAGAAAAGAAAAAAAAAAATCCAAAA
17460535 CATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAGCAAA
261 CATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAGCAAA
17460600 ACAAAAATA-AAT-AA-AT-AAA-AT-AAAT-AAAAAT-AAAAATAA-G-A-C-A-AAAAAATAA
326 A-AAAAATACAATAAATATAAAATATAAAATAAAAAATAAAAAATAATGAATCAATAAAAAATAA
* *
17460652 AAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAAAAATACAAAAATTGA
390 AAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTTTAAAAAATACAAAAATTGA
17460717 AAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAAAATTAAAAAAGAGAAA
455 AAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAAAATTAAAAAAGAGAAA
17460782 AGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAAC-T--AT--AAG-
520 AGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAACATGAATAAAAGA
*
17460841 -AAT-TTAAAAA--TG-AAAA-T---AAAAATAAAAAGAAATTTGTGAAAAAATTAAGAAAAGAA
585 AAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAAATTTGTG-AAAAATTAAGAAAAGAA
* * *
17460897 TAAAAATGGAAAGACAAACTGGA-TTATGAAAAAATAAAAAATCCAAAGGAAGTGT-AAAAAAAA
649 TAAAAATGAAAAGGCAAA--AGATTTATG--AAAA-AAAAAATCC-AAGGAAGTGTGAAAAAAAA
*
17460960 AT-GAAAC-AGAAAT-AAAAGAATTTTGTGGAA
708 ATGGAAACAAGAAATAAAAAGAA-TTT-TGCAA
* *
17460990 AAAAATTACAAAAACAAGAAAAAAT-AAAAAAT-AAGAGGCAAAAATATGAAACAAAAATAAAAA
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAA-TAAAATAAAAA
17461053 G-AAAAATGGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAA-AAAAGAAAATATGAA
65 GAAAAAAT-GTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAA
*
17461116 AGCACATGAAAAAAATAAGGAAACAAAAAGAAAAATTTAAAAGGGAAAAACGAGTTAATGAAAAA
129 AGCACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAA-GGAAAAA-GAGTTAATGAAAAA
* * *
17461181 TTATAAAAATACAAATAGAAAATAAGAAACAACGGTAAAT-----A-AAAA-AAATAAAAAAATT
192 TTATAAAAATAC-AATAGAAAATAAGAAACAACGATAAATAAAAAAGAAAAGAAAAAAAAAAATC
*
17461239 CAAAACATTAATAAAAATTTATGAAAATATAAATACAAGAAAGAAATAACAAAAGAAATAATATT
256 CAAAACATT-ATAAAAATTTATGAAAATATAAATA-AAGAAAGAAATAA-AAAAGAAAAAATATT
* *
17461304 AAAGGCAAAAAAAAATTATAATAGAA-ATACAATA-AAAATAAAAATATAAAAAAGTAA-GAA--
318 AAA-GCAAAAAAAAA-TACAATA-AATATAAAATATAAAATAAAAA-ATAAAAAA-TAATGAATC
*
17461364 AATAAAAAAGTAAAAAAAGACAAGAGAAATGAAATGAGATG-GAAAATAGAAAAAAAAATATTTT
378 AATAAAAAA-TAAAAAAAGAC-A-A-AAATGAAATGAAATGAGAAAATAG--AAAAAAATATTTT
17461428 AAAAAATACAAAAA-TGAAAAACATATAAGATATAAAATAAG-AAACAATATAAAAATTAACAAA
437 AAAAAATACAAAAATTGAAAAACATATAAGATAT--AATAAGAAAACAATATAAAAATT--CAAA
* *
17461491 GACAAAAAATAAAAAAGAGAAAAGGTTAATGC-AAAT-AAAATG--AACGAAAAAAGAAAATTCA
498 GACAAAAATTAAAAAAGAGAAAA-GTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCA
* * * *
17461552 ACACAAAAAA-A--ACTATAAG--AAT-T-TAAAA--TGAAAAA-T--AAAAAATAAAAA-AAAT
562 ACAAAAAAAACATGAATAAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAAAT
* *
17461604 TTGTAAAAAATTAAGAAAAGAATAAAAA-GAAAAGACAAAAGATTTATGAAAAATAAAACAATCC
627 TTGTGAAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATG-AAAA-AAAA-AATCC
* * *
17461668 AAGGAAGTGT-AAACAAAAAATGTAAACAAGAAATAAAAAGAAATTTTTACCCA
689 AAGGAAGTGTGAAA-AAAAAATGGAAACAAGAAATAAAAAG-AA-TTTT-GCAA
* *
17461721 AAAAATTAGAAAAAC-AG-AAAAATGAAAAAATGAAAAGGCAAAAATATGAAATAAAAT----A-
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
* *
17461779 AAAAAATGTTTTGTAAAAAAATTTTAGAAACAAAAGAAAAAAAAGTGAAAAC-AAAGAAAATATG
66 AAAAAATGTTTTGT-AGAAATTTTTA-AAAC-AAAG-AAAAAAAGTGAAAACAAAAGAAAATATG
17461843 AAAGCACATG-AAAAAATAAGG-AAAAAAAAG-AAAATTTAAAAGGAAAAAGAGTTAATGAAAAA
127 AAAGCACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAA
17461905 TTATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAA
192 TTATAAAAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAGAAAAG-AAAA-AAAAAAA
17461970 TCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAA-AAAAAAGAAAAAA-ATTA
254 TCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTA
*
17462033 AAGCAAAAAAAAATATAATTAAAATACAATAAAATATAAAATATAAAAGTAAGAAAATCAAAAAT
319 AAGC-------AA-A-AA--AAAATACAAT-AAATATAAAATATAAAA-TAA-AAAATAAAAAAT
*
17462098 AATGAATCAAAAATAAAAAATAAAAAAAGAC--AAATGAAATGAAACGAGAAAATAGAAAAAAAT
370 AATGAATC---AATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAAT
*
17462161 ATTTGAAAAAAATACAAAAAATT--AAAACATATAAGATATAATAAGAAAACAATATAAAAATTC
432 ATTT-TAAAAAATAC-AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTC
17462224 AAAGACAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATG-AAACG--AAAAGAAAATG
495 AAAGACAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATG
*
17462286 CAACAAAAAAAAC-T--AT--AAG--AAT-T-TAAAA--TG-AAAA-T---AAAAATAAAAAGAA
560 CAACAAAAAAAACATGAATAAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAA
17462335 ATTTGTGAAAAATTAAGAAAAGAATAAAAATGAAAAGGC-AAAGATTTATGAAAAAAAAAATCCA
625 ATTTGTGAAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATCCA
* *
17462399 AGGAAGTGTGAAAAAAAAATGGAAACAAG-AACAAAAAGAATTTTGCGA
690 AGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCAA
17462447 AAAAATTAG-AAAACAAG-AAAAATAAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAA
1 AAAAATTAGAAAAACAAGAAAAAAT-AAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAA
*
17462510 GAAAAAATGTTTTGTAGAAATTTTTAAAACGAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAA
65 GAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAA
*
17462575 GCACATG-AAAAAATAAGTAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATG-AAAATTA
130 GCACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
17462638 TAAAAATACAATAGAAAATAAG-AA-AACGATAAAT-AAAAA-AAAAGAAAATAAAAAAATCC-A
195 TAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAGAAAAGAAAA-AAAAAAATCCAA
17462698 AAC---ATAAAAATTTATGAAAATATAAATAAAGAAAGAAA-AAAAAAGAAAAAATATTAAAGCA
259 AACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAGC-
17462759 AAAAAAATATATTAAAAACAATAAAATATAAAATATAAAAAGTAAGAAAAT-AAAAAT-ATGAAT
323 AAAAAAA-A-A-T----ACAAT-AAATATAAAATAT-AAAA-TAA-AAAATAAAAAATAATGAAT
* *
17462822 CAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAATATTTGAAA
377 C--AATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTTTAAA
17462887 AAA-ACAAAAAATT--AAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAA
440 AAATAC-AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAA
17462949 AATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAA
504 AATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAA
*
17463014 AAA-ACT--AT--AAG--AAT-TTAAAAA--TG-AAAA-T--AAAAAATAAAAAGAAATTTGTGA
569 AAACA-TGAATAAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAAATTTGTG-
*
17463065 AAAAATTAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAAAAAAATCCAAGGAAGT
632 AAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATCCAAGGAAGT
17463130 GT-AAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAA
697 GTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGC-AA
17463172 AAAAATTAGAAAAACAAGAAAAAAT-AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAA-
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
17463235 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTG-AAACAAAAGAAAATATGAAAG
66 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
*
17463299 CACATGAAAAAAATAAGAAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
131 CACATGAAAAAAATAAG-GAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
17463364 TAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCC
195 TAAAAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAGAAAAG-AAAA-AAAAAAATCC
17463429 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAAATATTAAA
257 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAG-AAAAAATATTAAA
*
17463494 GCAAAAAAAAATATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAAAATA
321 GC-------AA-A-AA--AAAATACAAT-AAATATAAAATAT-AAAA-TAA-AAAATAAAAAATA
* *
17463559 ATGAATAAAAATAAAAAA-AAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAACAAAAATA
371 ATGAAT--CAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAA-AAAAATA
* * *
17463623 TTTGAAAAAAAACAAAAAATTTAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAA
433 TTTTAAAAAATAC-AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAA
17463688 AGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGC
497 AGAC-AAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGC
*
17463753 AACAAAAAAAA-ACT--AT--AAG--AAT-TTAAAAA--TG-AAAA-T--AAAAAATAAAAAGAA
561 AACAAAAAAAACA-TGAATAAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAA
17463804 ATTTGTGAAAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATCC
625 ATTTGTG-AAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATCC
*
17463869 AAGGAAGTGTG-AAAAAAAATGGAAACAAGAAACAAAAAGAATTTTGCAAA
689 AAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGC-AA
17463919 AAAAATTAGAAAAACAAGAAAAAATAAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAA
1 AAAAATTAGAAAAACAAGAAAAAAT-AAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAA
*
17463984 GAAAAAATGTTTTTTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAA
65 GAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAA
*
17464049 GCACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATTAAAAATTA
130 GCACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
*
17464114 TAAAAATACAATAGAAAATAAGAAAC--CGATAAATAAAAAAAGGAAAGAAAAATAAAAAAATCC
195 TAAAAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAGAAAAG-AAAA-AAAAAAATCC
17464177 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAG
257 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAG
*
17464242 C------AAA-A-AA-AAAT-T---ATATAAAAT-----AT---AAA-AA-G--T--A-AGAAAA
322 CAAAAAAAAATACAATAAATATAAAATATAAAATAAAAAATAAAAAATAATGAATCAATAAAAAA
* * * *
17464279 TAAAAAAATACAAAAATGAAATGAAACGAGAAAATAGAAAAAAAATATTTGAAAAAAAACAAAAA
387 TAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAG-AAAAAAATATTTTAAAAAATAC-AAAA
17464344 ATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAAAAATTAAAAAA
450 ATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGAC-AAAAATTAAAAAA
*
17464409 GAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAA-A--ACT
514 GAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAACATGAAT
** *
17464471 CCAAG--AATTTAAAAAA--TG-AAAA-T--AAAAAATAAAAAGAAATTTGTGAAAAAATTAAGA
579 AAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAAATTTGTG-AAAAATTAAGA
* * ** *
17464528 AAAGAATAAAAATGGAAAGACAACTGATTTATGAAAAATAAAAATTCCAAGGAAGTGTAAAAAAA
643 AAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAA-AAAAA-TCCAAGGAAGTGTGAAAAAA
*
17464593 AAATGGAAACAAGAAATAAAAAGAATTTTGTGAA
706 AAATGGAAACAAGAAATAAAAAGAATTTTG-CAA
17464627 AAAAATTAGAAAAACAAGAAAAAAT-AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
17464691 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
66 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
17464756 CACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTAT
131 CACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTAT
* *
17464821 AAAAATACAATAGAAAATAAGAAACAACGGTAAAT-------AAAA-AAATAAAAAAATCCAAAA
196 AAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAGAAAAGAAAAAAAAAAATCCAAAA
17464878 CATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAAT-AAAAAGAAAAAAATATTAAAGCAA
261 CATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAG-AAAAAATATTAAAGC--
17464942 AAAAAAATTATAATTAGAATACAATAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATG
323 ----AAA--A-AA--A-AATACAAT-AAATATAAAATAT-AAAA-TAA-AAAATAAAAAATAATG
17465007 AATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTT
374 AATC---AATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTT
*
17465072 TAAAAAATACAAAAAATTGAAAAACATGTAAGATATAATAAGAAAACAATATAAAAATTCAAAGA
436 TAAAAAATAC-AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGA
17465137 CAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAAC
500 C-AAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAAC
*
17465202 AAAAAAAAC-T--AT--AAG--AAT-TTAAAAA--TG-AAAA-T--AAAAAATAAAAA-AAA-TT
564 AAAAAAAACATGAATAAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAAATTT
*
17465251 GTGAAAAAATTAAGAAAAGAATAAAAATGAAAA-G-ACAAGATTTATGAAAAAAAAAATCCAAGG
629 GTG-AAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATCCAAGG
*
17465314 AAGTGTGAAAAAAAAATGGAAACAAGAAACAAAAAGAATTTTGCGAA
693 AAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGC-AA
17465361 AAAAATTAGAAAAACAAGAAAAAATAAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAA
1 AAAAATTAGAAAAACAAGAAAAAAT-AAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAA
17465426 GAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAA
65 GAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAA
* *
17465491 GCACATGAACAAAATAA-G------TAA-AAAAA---AAAA--AAAAAGAGTTAATGAAAAATTA
130 GCACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
17465543 TAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCC
195 TAAAAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAGAAAAG-AAAA-AAAAAAATCC
17465608 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGGAAAAAATATTAAA
257 AAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAA-GAAAAAATATTAAA
*
17465673 GCAAAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAAAAT
321 GC-------AA--A-AA--AAAATACAAT-AAATATAAAATAT-AAAA-TAA-AAAATAAAAAAT
17465738 AATGAATCAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAAT
370 AATGAATC---AATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAAT
17465803 ATTTTAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCA
432 ATTTTAAAAAATAC-AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCA
* * *
17465868 AAGACAAAAAATTGAAAAAGAGAAAGGTTAATGGAAAATAAAAATGAAAACGAAAAAAGAAAATG
496 AAGAC-AAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATG
*
17465933 CAACAAAAAAAA-ACT--AT--AAG--AAT-TTAAAAA--TG-AAAA-T---AAAAATAAAAA-A
560 CAACAAAAAAAACA-TGAATAAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGA
* *
17465982 AATTTGTGAAAAAATTAAGAAAAGAATAAAAATGGAAAGACAAAAGATTTATGAAAAATAAAAAA
624 AATTTGTG-AAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATTTATG-AAAA-AAAAAA
* *
17466047 TCTAAGGAAGTGT-AAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGGAAA
686 TCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTT-GCAA
* * *
17466100 AAAAATTAGAAAAAC----AACAA-AAAAAAATGAAGAGGAAAAAATTTGAAATAAAAT-AAAAG
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
*
17466159 AAAAAATGTTTTGTAGAAATTTTTATAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
66 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
* *
17466224 CACATG-AAAATATAA-GTAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTAT
131 CACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTAT
* *
17466287 AAAAATACAATAGAAAATAAGAAACAACAATAAATAAAAAA-AGAAGAAAAGTAAAAAAATCCAA
196 AAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAGAAAAGAAAA--AAAAAAATCCAA
17466351 AACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAAATATT-----
259 AACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAG-AAAAAATATTAAAGC
* * **
17466411 AAAACAAAACA-AATAAA-AT--AA-ATAAAAT--GCAAT--AAAAT-AT-AA--AAT-AAAAAT
323 AAAAAAAAATACAATAAATATAAAATATAAAATAAAAAATAAAAAATAATGAATCAATAAAAAAT
17466462 AAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTTTAAAAAATACAAAAAA
388 -AAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTTTAAAAAATAC-AAAAA
17466527 TTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAAAAATTAAAAAAG
451 TTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGAC-AAAAATTAAAAAAG
17466592 AGAAAAGTTAATGCAAAATAAAAATGAAAA-GCAAAAAAGAAAATGCAACAAAAAAAAC-T--AT
515 AGAAAAGTTAATGCAAAATAAAAATGAAAACG-AAAAAAGAAAATGCAACAAAAAAAACATGAAT
* * *
17466653 --AAG--AAT-TTAAAAA--TG-AAAA-T--AAAAAATAACAA-AAATTTGTAAAAAAATTAAGA
579 AAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAAATTTGT-GAAAAATTAAGA
* *
17466706 AAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATCC----AAGTGTAAAAAAA
643 AAAGAATAAAAATGAAAAGGCAAAAGATTTATG-AAAA-AAAAAATCCAAGGAAGTGTGAAAAAA
* *
17466767 AATATGGAAACAAGAAATAAAAAGTATTTTACGAA
706 AA-ATGGAAACAAGAAATAAAAAGAATTTTGC-AA
* *
17466802 AAAAATTAAAAAAACAAGAAAAAATAAAAAAA-GAAGATGCAAAAATATGAAATAAAAT----A-
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
17466861 AAAAAATGTTTTGTAGAAATTTTTAAAACAAA-AAAAAAAGTGAAAACAAAAGAAAATATGAAAG
66 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
*
17466925 CACATG-AAAAAATAAGTAAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
131 CACATGAAAAAAATAAG-GAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTA
* *
17466989 TAAAAATACAATAAAAAATAAGAAACAGCGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCC
195 TAAAAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAGAAAAG-AAAA-AAAAAAATCC
* * *
17467054 AAAACAGTATAAAAATTTATGAAAATATAAAGAAAGATGAA-AAGTAAGAAAA-ACAAAAATATT
257 AAAACATTATAAAAATTTATGAAAATATAAATAAAGA--AAGAAATAA-AAAAGA-AAAAATATT
* * * *
17467117 AAAGCAAAACAAAAAATATAAATAAA-ATACAATA-AAATATAAAATATAAAAAGTAA-GAA--A
318 AAAGC-AAA-AAAAAATA-CAATAAATATAAAATATAAA-ATAAAAAATAAAAAATAATGAATCA
* *
17467177 ATAAAAAGTAAAAAAAGACAAAAATGAAATGAGATGAGAAAATAGAAAAAAAATATTTTAAAAAA
379 ATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAG-AAAAAAATATTTTAAAAAA
* *
17467242 TACAAAAAATTGAAAAATATATAAGATATAATAAGGAAACAATATAAAAATTCAAAGACAAAAAA
443 TAC-AAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGAC-AAAAA
* *
17467307 TT-AAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATTCAAC-AAAAAG
506 TTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAA
* * *
17467370 AC-T--AT--AAG--AAT-TTAAAAA--TG--AAA-T--AAAAAATAAAAAAAAATTTGTAAAAA
571 ACATGAATAAAAGAAAATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAAATTTGT-GAAA
*
17467420 AATTAAGAAAAGAAT-AAAAT-AGAAAGACAAAAGATTTATGAAAAATTAAAAATCCAAGGAAGT
635 AATTAAGAAAAGAATAAAAATGA-AAAGGCAAAAGATTTATGAAAAA--AAAAATCCAAGGAAGT
* *
17467483 GTAAAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTACGAA
697 GT-GAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGC-AA
*
17467527 AAAAATTAGAAAAACAAGAAAAAAT-AAAAAATGAAAAGGCAAAAATATGAAATAAAAT---AA-
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
*
17467587 AAAAAATGTTTTGTAAAAATTTTTAAAACAAAGAAAAAAAAAGTGAAAACAAAAGAAAATATGAA
66 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAG--AAAAAAAGTGAAAACAAAAGAAAATATGAA
* * * *
17467652 AGCGCATGAAAAAATACGTAA-AAAAAAAAAAGAAAAATTCAAAAGGGAAAAGAGTTAATGAAAA
129 AGCACATGAAAAAA-A--TAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAA
** *
17467716 ATTATAAAAATACAATAGAAAATAACCAACAACGATAAATAAAAAAGATAAAAAAAAATAAAAAA
191 ATTATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAG--AAAAGAAAA-AAAAAA
* *
17467781 ATTCAAAACATTATAAAAATTTTATGAAAATATAAATAAAGAAAGAAAAAAAAAATAAAAAGAAA
253 ATCCAAAACATTATAAAAA-TTTATGAAAATATAAATAAAGAAAG-----AAATA-AAAAAGAAA
*
17467846 AAATATTAAAGCAAAACAAAAAATATAAATAAAATAAAATAAAATATAAATATAAAATATAAAAA
311 AAATATTAAAG-----C-AAAAA-A-AAATACAAT-AAAT---ATA-AAATATAAAATA-AAAAA
*
17467911 GTCAAAAAATCAAAAATAATGAATCAAAAATAAAAAATAAAAAAAGACAGAAATGAAATGAAATG
362 -T------A--AAAAATAATGAATC---AATAAAAAATAAAAAAAGACAAAAATGAAATGAAATG
17467976 AGAAAATAG-AAAAAATATTTTAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAA
415 AGAAAATAGAAAAAAATATTTTAAAAAATAC-AAAAATTGAAAAACATATAAGATATAATAAGAA
* *
17468040 AACAATATAAAAATTCAAAAATTAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAA
479 AACAATATAAAAATTCAAAGA-CAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAA
* * *
17468105 AACCAAAAAAGGAAATGC-A-AAAAAAAA-AT--AT--AAG--AAT-TTAAAAA--TG-AAAATT
543 AACGAAAAAAGAAAATGCAACAAAAAAAACATGAATAAAAGAAAATATAAAAAATTTGAAAAATT
* *
17468157 ---AAAAATAAAAA-AAATTCGTGAAAAAATTAAGAAAAGAAT-AAAATGAAAAGACAAAAGATT
608 AAAAAAAATAAAAAGAAATTTGTG-AAAAATTAAGAAAAGAATAAAAATGAAAAGGCAAAAGATT
* * * *
17468217 TATGAAAAATAAAAAAATCCAAGGAAGTGTAAAAAAAAAATGAAAACAAGAAATAAAAAAAATTG
672 TATG--AAA-AAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAAATAAAAAGAATTT
17468282 TG-AA
734 TGCAA
*
17468286 AAAAATTAGAAAAACAAGAAAAAAT-TAAAAATGAAGAGGCAAAAATATGAAATAAAAT---AA-
1 AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
* * *
17468346 AAAAAA-GTTTTATAGAAATTTTTAAAACAATG-AAAAAAGTGAAAACAAAAAAAAATATATGAA
66 AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAAC-AAAAGAAA-ATATGAA
* *
17468409 AGCACATG-AAAAAATAA-G--TAAAAAA-AAAAATTTAAAAGGAAAATGAGTTAATGAAAAATT
129 AGCACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATT
* ** *
17468469 ATAAAAATACAACAGAAAATAACCAACAATGATAAATAAAAAAAGAAAAAAAAGAGATAGAAAAT
194 ATAAAAATACAATAGAAAATAAGAAACAACGATAAAT-AAAAAAG-------A-A-A-AGAAAA-
*
17468534 TAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAGAGAAAGAAATAAAAAA
247 -AAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAA
17468595 ATAAACCAAA
Statistics
Matches: 9706, Mismatches: 288, Indels: 1081
0.88 0.03 0.10
Matches are distributed among these distances:
696 6 0.00
697 69 0.01
698 3 0.00
700 9 0.00
701 54 0.01
702 82 0.01
703 294 0.03
704 279 0.03
705 142 0.01
706 258 0.03
707 152 0.02
708 207 0.02
709 131 0.01
710 162 0.02
711 150 0.02
712 90 0.01
713 66 0.01
714 69 0.01
715 35 0.00
716 171 0.02
717 59 0.01
718 89 0.01
719 89 0.01
720 74 0.01
721 85 0.01
722 101 0.01
723 336 0.03
724 295 0.03
725 231 0.02
726 179 0.02
727 87 0.01
728 166 0.02
729 217 0.02
730 156 0.02
731 265 0.03
732 181 0.02
733 110 0.01
734 189 0.02
735 330 0.03
736 313 0.03
737 49 0.01
738 135 0.01
739 145 0.01
740 121 0.01
741 328 0.03
742 193 0.02
743 370 0.04
744 119 0.01
745 202 0.02
746 158 0.02
747 476 0.05
748 145 0.01
749 107 0.01
750 212 0.02
751 103 0.01
752 4 0.00
753 51 0.01
754 89 0.01
755 77 0.01
756 27 0.00
757 52 0.01
758 90 0.01
759 107 0.01
760 29 0.00
761 191 0.02
762 83 0.01
763 53 0.01
764 8 0.00
765 1 0.00
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.17
Consensus pattern (738 bp):
AAAAATTAGAAAAACAAGAAAAAATAAAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAG
AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAG
CACATGAAAAAAATAAGGAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTAT
AAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAGAAAAGAAAAAAAAAAATCCAAAA
CATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGAAAAAATATTAAAGCAAA
AAAAAATACAATAAATATAAAATATAAAATAAAAAATAAAAAATAATGAATCAATAAAAAATAAA
AAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTTTAAAAAATACAAAAATTGAA
AAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAAAATTAAAAAAGAGAAAA
GTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAAAAAACATGAATAAAAGAA
AATATAAAAAATTTGAAAAATTAAAAAAAATAAAAAGAAATTTGTGAAAAATTAAGAAAAGAATA
AAAATGAAAAGGCAAAAGATTTATGAAAAAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAAC
AAGAAATAAAAAGAATTTTGCAA
Found at i:17461354 original size:8 final size:7
Alignment explanation
Indices: 17461337--17461380 Score: 52
Period size: 8 Copynumber: 5.7 Consensus size: 7
17461327 GAAATACAAT
17461337 AAAAATA
1 AAAAATA
17461344 AAAATATA
1 AAAA-ATA
17461352 AAAAAGTA
1 AAAAA-TA
17461360 AGAAAATA
1 A-AAAATA
17461368 AAAAAGTA
1 AAAAA-TA
17461376 AAAAA
1 AAAAA
17461381 AGACAAGAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
7 9 0.27
8 20 0.61
9 4 0.12
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.14
Consensus pattern (7 bp):
AAAAATA
Found at i:17461381 original size:16 final size:16
Alignment explanation
Indices: 17461337--17461381 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
17461327 GAAATACAAT
*
17461337 AAAAA-TAAAAATATA
1 AAAAAGTAAAAAAATA
*
17461352 AAAAAGTAAGAAAATA
1 AAAAAGTAAAAAAATA
17461368 AAAAAGTAAAAAAA
1 AAAAAGTAAAAAAA
17461382 GACAAGAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 5 0.19
16 21 0.81
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (16 bp):
AAAAAGTAAAAAAATA
Found at i:17462042 original size:21 final size:21
Alignment explanation
Indices: 17462015--17462055 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
17462005 AAAGAAAGAA
*
17462015 AAAAAAAGAAAAAAATTAAAGC
1 AAAAAAA-AATAAAATTAAAGC
*
17462037 AAAAAAAAATATAATTAAA
1 AAAAAAAAATAAAATTAAA
17462056 ATACAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (21 bp):
AAAAAAAAATAAAATTAAAGC
Found at i:17462124 original size:7 final size:7
Alignment explanation
Indices: 17462063--17462124 Score: 52
Period size: 7 Copynumber: 8.6 Consensus size: 7
17462053 AAAATACAAT
*
17462063 AAAATAT
1 AAAATAA
17462070 AAAATATA
1 AAAATA-A
*
17462078 AAAGTAA
1 AAAATAA
*
17462085 GAAAATCA
1 -AAAATAA
17462093 AAAATAA
1 AAAATAA
** *
17462100 TGAATCA
1 AAAATAA
17462107 AAAATAA
1 AAAATAA
17462114 AAAATAA
1 AAAATAA
17462121 AAAA
1 AAAA
17462125 AGACAAATGA
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
7 32 0.76
8 10 0.24
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (7 bp):
AAAATAA
Found at i:17462663 original size:21 final size:21
Alignment explanation
Indices: 17462630--17462685 Score: 51
Period size: 22 Copynumber: 2.6 Consensus size: 21
17462620 AAGAGTTAAT
* *
17462630 GAAAATTATAAAA-ATACAATA
1 GAAAATAAGAAAACATA-AATA
17462651 GAAAATAAGAAAACGATAAATA
1 GAAAATAAGAAAAC-ATAAATA
* *
17462673 AAAAAAAAGAAAA
1 GAAAATAAGAAAA
17462686 TAAAAAAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 11 0.38
22 15 0.52
23 3 0.10
ACGTcount: A:0.73, C:0.04, G:0.09, T:0.14
Consensus pattern (21 bp):
GAAAATAAGAAAACATAAATA
Found at i:17462678 original size:15 final size:14
Alignment explanation
Indices: 17462650--17462693 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
17462640 AAAATACAAT
*
17462650 AGAAAATAAGAAAA
1 AGAAAATAAAAAAA
*
17462664 CGATAAATAAAAAAAA
1 AGA-AAAT-AAAAAAA
17462680 AGAAAATAAAAAAA
1 AGAAAATAAAAAAA
17462694 TCCAAACATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 9 0.36
15 8 0.32
16 8 0.32
ACGTcount: A:0.80, C:0.02, G:0.09, T:0.09
Consensus pattern (14 bp):
AGAAAATAAAAAAA
Found at i:17462741 original size:24 final size:23
Alignment explanation
Indices: 17462714--17462817 Score: 61
Period size: 24 Copynumber: 4.3 Consensus size: 23
17462704 AAAATTTATG
17462714 AAAATATAAATAAAGAAAGAAAA-A
1 AAAATAT-AA-AAAGAAAGAAAATA
* * *
17462738 AAAAGAAAAAATATTAAAGCAAAA-A
1 AAAATATAAAA-A-GAAAG-AAAATA
* *
17462763 AAATATATTAAAAA-CAATAAAATA
1 AAA-ATA-TAAAAAGAAAGAAAATA
*
17462787 TAAAATATAAAAAGTAAGAAAATA
1 -AAAATATAAAAAGAAAGAAAATA
17462811 AAAATAT
1 AAAATAT
17462818 GAATCAAAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 17
0.71 0.10 0.19
Matches are distributed among these distances:
22 2 0.03
23 20 0.32
24 23 0.37
25 11 0.17
26 3 0.05
27 4 0.06
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.18
Consensus pattern (23 bp):
AAAATATAAAAAGAAAGAAAATA
Found at i:17462787 original size:17 final size:16
Alignment explanation
Indices: 17462736--17462791 Score: 51
Period size: 19 Copynumber: 3.2 Consensus size: 16
17462726 AAGAAAGAAA
17462736 AAAAAAGAAAAAATATT
1 AAAAAA-AAAAAATATT
17462753 AAAGCAAAAAAAATATATT
1 AAA--AAAAAAAA-ATATT
*
17462772 AAAAACAATAAAATA-T
1 AAAAA-AAAAAAATATT
17462788 AAAA
1 AAAA
17462792 TATAAAAAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
16 5 0.15
17 8 0.24
18 10 0.29
19 11 0.32
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.18
Consensus pattern (16 bp):
AAAAAAAAAAAATATT
Found at i:17462797 original size:23 final size:23
Alignment explanation
Indices: 17462758--17462817 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
17462748 ATATTAAAGC
*
17462758 AAAA-AAAATATATTAAAAA-CAAT
1 AAAATAAAA-ATA-TAAAAAGCAAG
*
17462781 AAAATATAAAATATAAAAAGTAAG
1 AAAATA-AAAATATAAAAAGCAAG
17462805 AAAATAAAAATAT
1 AAAATAAAAATAT
17462818 GAATCAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 17 0.53
24 12 0.38
25 3 0.09
ACGTcount: A:0.73, C:0.02, G:0.03, T:0.22
Consensus pattern (23 bp):
AAAATAAAAATATAAAAAGCAAG
Found at i:17462835 original size:7 final size:7
Alignment explanation
Indices: 17462773--17462840 Score: 55
Period size: 7 Copynumber: 8.9 Consensus size: 7
17462763 AAATATATTA
17462773 AAAACAAT
1 AAAA-AAT
*
17462781 AAAATAT
1 AAAAAAT
*
17462788 AAAATAT
1 AAAAAAT
*
17462795 AAAAAGT
1 AAAAAAT
17462802 AAGAAAAT
1 AA-AAAAT
17462810 AAAAATAT
1 AAAAA-AT
17462818 GAATCAAAAT
1 -AA--AAAAT
17462828 AAAAAAT
1 AAAAAAT
17462835 AAAAAA
1 AAAAAA
17462841 AGACAAAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
7 30 0.59
8 12 0.24
9 4 0.08
10 2 0.04
11 3 0.06
ACGTcount: A:0.75, C:0.03, G:0.04, T:0.18
Consensus pattern (7 bp):
AAAAAAT
Found at i:17462853 original size:33 final size:35
Alignment explanation
Indices: 17462788--17462853 Score: 84
Period size: 33 Copynumber: 1.9 Consensus size: 35
17462778 AATAAAATAT
* *
17462788 AAAATATAAAAAGTAAGAAAATAAAAATATGAATC
1 AAAATATAAAAAGTAAAAAAAGAAAAATATGAATC
17462823 AAAATA-AAAAA-TAAAAAAAGACAAAA-ATGAA
1 AAAATATAAAAAGTAAAAAAAGA-AAAATATGAA
17462854 ATGAAACGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 13 0.46
34 9 0.32
35 6 0.21
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.15
Consensus pattern (35 bp):
AAAATATAAAAAGTAAAAAAAGAAAAATATGAATC
Found at i:17463479 original size:15 final size:16
Alignment explanation
Indices: 17463450--17463506 Score: 57
Period size: 15 Copynumber: 3.8 Consensus size: 16
17463440 AAAATTTATG
*
17463450 AAAATATAAATAAAGA
1 AAAAAATAAATAAAGA
*
17463466 AAGAAATAAA-AAAGA
1 AAAAAATAAATAAAGA
* *
17463481 AAAAAAT-ATTAAAGC
1 AAAAAATAAATAAAGA
17463496 AAAAAA-AAATA
1 AAAAAATAAATA
17463507 TAATTAAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
14 1 0.03
15 24 0.73
16 8 0.24
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (16 bp):
AAAAAATAAATAAAGA
Found at i:17463499 original size:21 final size:21
Alignment explanation
Indices: 17463475--17463514 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
17463465 AAAGAAATAA
17463475 AAAAGAAAAAAAT-ATTAAAGC
1 AAAA-AAAAAAATAATTAAAGC
*
17463496 AAAAAAAAATATAATTAAA
1 AAAAAAAAAAATAATTAAA
17463515 ATACAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (21 bp):
AAAAAAAAAAATAATTAAAGC
Found at i:17463575 original size:7 final size:7
Alignment explanation
Indices: 17463519--17463582 Score: 51
Period size: 7 Copynumber: 9.3 Consensus size: 7
17463509 ATTAAAATAC
17463519 AATAAAA
1 AATAAAA
*
17463526 TATAAAA
1 AATAAAA
*
17463533 TATAAAA
1 AATAAAA
*
17463540 AGTAAGAA
1 AATAA-AA
*
17463548 AATCAAA
1 AATAAAA
**
17463555 AATAATG
1 AATAAAA
17463562 AAT-AAA
1 AATAAAA
17463568 AATAAAA
1 AATAAAA
17463575 AA-AAAA
1 AATAAAA
17463581 AA
1 AA
17463583 AGACAAAAAT
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
6 10 0.22
7 30 0.67
8 5 0.11
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.17
Consensus pattern (7 bp):
AATAAAA
Found at i:17463644 original size:19 final size:19
Alignment explanation
Indices: 17463613--17463649 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
17463603 GAGAAAATAG
17463613 AACAAAAATATTTGAAAAAA
1 AACAAAAATATTT-AAAAAA
17463633 AACAAAAA-ATTTAAAAA
1 AACAAAAATATTTAAAAA
17463650 CATATAAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.73, C:0.05, G:0.03, T:0.19
Consensus pattern (19 bp):
AACAAAAATATTTAAAAAA
Found at i:17464227 original size:15 final size:15
Alignment explanation
Indices: 17464197--17464252 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
17464187 AAAAATTTAT
*
17464197 GAAAATATAAATAAA
1 GAAAAAATAAATAAA
17464212 GAAAGAAATAAA-AAA
1 GAAA-AAATAAATAAA
*
17464227 GAAAAAAT-ATTAAA
1 GAAAAAATAAATAAA
17464241 GCAAAAAA-AAAT
1 G-AAAAAATAAAT
17464253 TATATAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
13 1 0.03
14 8 0.24
15 19 0.56
16 6 0.18
ACGTcount: A:0.75, C:0.02, G:0.09, T:0.14
Consensus pattern (15 bp):
GAAAAAATAAATAAA
Found at i:17464325 original size:703 final size:700
Alignment explanation
Indices: 17463563--17467895 Score: 4433
Period size: 703 Copynumber: 6.0 Consensus size: 700
17463553 AAAATAATGA
*
17463563 ATAAAAATAAAAAA-AAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAACAAAAATATTTG
1 ATAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAAATATTTG
*
17463627 AAAAAAAACAAAAAATTTAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGAC
66 AAAAAAAACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGAC
17463692 AAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACA
131 AAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACA
*
17463757 AAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTAAG
196 AAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTAAAAAAATTAAG
* *
17463822 AAAAGAATAAAAATGAAAAGGCAAAAGATTTATGAAAAA-AAAAATCCAAGGAAGTGT-GAAAAA
261 AAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAATCCAAGGAAGTGTAAAAAAA
* *
17463885 AAATGGAAACAAGAAACAAAAAGAATTTTGCAAAAAAAATTAGAAAAACAAGAAAAAATAAAAAA
326 AAATGGAAACAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGAAAAAAT-AAAAA
* *
17463950 AATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTTTAGAAATTTTTAAAACA
390 AATGAAAAGGCAAAAATATGAAATAAAAT-AAAA-AAAAAATGTTTTGTAGAAATTTTTAAAACA
17464015 AAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAAGGAAAAAAAAAGAA
453 AAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAA-GAAAAAAAAAGAA
*
17464080 AAATTTAAAAGGAAAAAGAGTTAATTAAAAATTATAAAAATACAATAGAAAATAAGAAAC-CGAT
517 AAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACACGAT
*
17464144 AAATAAAAAAAGGAAAGAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAAT
582 AAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAAT
17464209 AAAGAAAGAAATAAAAAAGAAAAAATATTAAAGCAAAAAAAAATTATATAAAAT
647 AAAGAAAGAAATAAAAAAGAAAAAATATTAAAGCAAAAAAAAATTATATAAAAT
*
17464263 ATAAAAAGTAAGAAAATAAAAAAATACAAAAATGAAATGAAACGAGAAAATAGAAAAAAAATATT
1 ATAAAAA-TAA-AAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAAATATT
17464328 TGAAAAAAAACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAG
64 TGAAAAAAAACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAG
17464393 ACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAA
129 ACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAA
** *
17464458 CAAAAAAAAAACTCCAAGAATTTAAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAAT
194 C-AAAAAAAAACTATAAGAATTT-AAAAATGAAAATAAAAAATAAAAAGAAATTTGTAAAAAAAT
* **
17464523 TAAGAAAAGAATAAAAATGGAAAGACAACTGATTTATGAAAAATAAAAATTCCAAGGAAGTGTAA
257 TAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAA-TCCAAGGAAGTGTAA
*
17464588 AAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGTGAAAAAAATTAGAAAAACAAGAAAAAAT-
321 AAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGAAAAAATA
*
17464652 AAAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAA
386 AAAAAATGAAAAGGCAAAAATATGAAATAAAAT-AAAA-AAAAAATGTTTTGTAGAAATTTTTAA
17464717 AACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAAGGAAAAAAAA
449 AACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAA-GAAAAAAAA
17464782 AGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACA
513 AGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAAC-
*
17464847 ACGGTAAAT----------AA-AAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATA
577 ACGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATA
*
17464901 TAAATAAAGAAAGAAAT-AAAAAGAAAAAAATATTAAAGCAAAAAAAAATTATAATTAGAATACA
642 TAAATAAAGAAAGAAATAAAAAAG-AAAAAATATTAAAGCAAAAAAAAATTAT-A-TA-AA-A-T
* * ** *
17464965 ATAAAATATAAAATATAAAAAGTAAGAAAATAAAAAATAATGAATC-A-AAAATA-AAAAATAAA
1 ATAAAA-ATAAAAAATAAAAA--AAGACAA-AAATGA-AATGAAACGAGAAAATAGAAAAA-AAA
*** * ** * * * ** *
17465027 -AAAAGACAAAAATGAAATGAAA-TGAGAAA-ATAGAA-A-AAAATATTTTAAAA-AATACAAAA
60 TATTTGAAAAAAAACAAA--AAATTGAAAAACATATAAGATATAATA--AGAAAACAATA-TAAA
* * * * * * * * *
17465086 AATTGAAAAACATGTAAGA-TATAATAAGA-AAACAATATAAAAATTCAAAGACAAAAAATTAAA
120 AATTCAAAGACA--AAAAATTA-AAAAAGAGAAA-AGT-T---AATGCAAA-A-TAAAAA-TGAA
* * ** * * * ** *
17465149 AAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAA-AAAAACTA
174 AACGAAAAAAGAAAATGC--AACAAAAA--AAAAC--TATAAG--AATTTAA-AAATGAAAA-TA
* * *** ** ** * * *
17465213 TAAGAATTTAAAAATGAAAATAAAAAATAAAAAAAATTGTGAAAAAATTAAGAAAAGAATAAAAA
229 -AA-AA-ATAAAAA-GAAATTTGTAAA-AAAATTAA--GAAAAG-AA-TAA-AAATG-A-AAAGA
* *
17465278 TGAAAAGACAAGATTTATGAAAAA-AAAAATCCAAGGAAGTGTGAAAAAAAAATGGAAACAAGAA
282 ----CA-A-AAGATTTATGAAAAATAAAAATCCAAGGAAGTGTAAAAAAAAAATGGAAACAAGAA
* *
17465342 ACAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGAAAAAATAAAAAAAATGAAGAGGCAAAA
341 ATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGAAAAAAT-AAAAAAATGAAAAGGCAAAA
17465407 ATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAA
405 ATATGAAATAAAAT-AAAA-AAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAAAGTGAA
* *
17465472 AACAAAAGAAAATATGAAAGCACATGAACAAAATAAG------TAA-AAAAA---AAAA--AAAA
468 AACAAAAGAAAATATGAAAGCACATGAAAAAAATAAGAAAAAAAAAGAAAAATTTAAAAGGAAAA
17465525 AGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAAAGAAA
533 AGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAAC-ACGATAAATAAAAAAAGAAA
17465590 AGAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAA
597 AGAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAA
17465655 AAAGGAAAAAATATTAAAGCAAAAAAAAATTATAATTAAAAT
662 AAA-GAAAAAATATTAAAGCAAAAAAAAATTAT-A-TAAAAT
* *
17465697 ACAATAAAATATAAAATATAAAAAGTAAGAAAATCAAAAAT--AATGAATC-A-AAAATA-AAAA
1 ---ATAAAA-ATAAAAAATAAAAA--AAG---A-CAAAAATGAAATGAAACGAGAAAATAGAAAA
*** * ** * * * **
17465757 ATAAA-AAAAGACAAAAATGAAATGAAA-TGAGAAA-ATAGAA-A-AAAATATTTTAAAA-AATA
56 A-AAATATTTGAAAAAAAACAAA--AAATTGAAAAACATATAAGATATAATA--AGAAAACAATA
* * * * * * * *
17465816 CAAAAAATTGAAAAACATATAAGA-TATAATAAGA-AAACAATATAAAAATTCAAAGACAAAAAA
116 -TAAAAATTCAAAGACA-A-AAAATTA-AAAAAGAGAAA-AGT-T---AATGCAAA-A-TAAAAA
* * * ** * * * *** *
17465879 TTGAAAAAGAGAAAGGTTAATG-GA-AAATAAAAA-TGAAAACGAAAAAAGAAAATGCAACAAAA
170 -TGAAAACGAAAAAAGAAAATGCAACAAAAAAAAACT-ATAA-GAATTTA-AAAATG-AA-AATA
* ** * *
17465941 AAAAACTATAAGAATTTAAAAATGAAAATAAAAATAA-AAAA-AATTTGTGAAAAAATTAAGAAA
229 AAAAA-TA-AA-AA--GAAATTTGTAAA-AAAATTAAGAAAAGAA----T--AAAAA-T--GAAA
* ** * * * *
17466004 AGA-ATAAAAATGGAAAGACAAAAGATTTATGAAAAAT--AA-AAAATCTAAGGAAGTGTAAAAA
279 AGACA-AAAGAT-TTATG---AAA-A---AT-AAAAATCCAAGGAAGTGT-A--AA----AAAAA
* * ** * *
17466065 AAAATGGAAACAAGAAA-TAAAA-AGAATTTTGGAAAAAAAATTAG--AAA-AA-CAACAA-AAA
327 A--ATGGAAACAAGAAATAAAAAGA-ATTTTGCGAAA-AAAATTAGAAAAACAAGAAAAAATAAA
* * * *
17466123 AAAATGAAGAGGAAAAAATTTGAAATAAAATAAAAGAAAAAATGTTTTGTAGAAATTTTTATAAC
388 AAAATGAAAAGGCAAAAATATGAAATAAAATAAAA-AAAAAATGTTTTGTAGAAATTTTTAAAAC
* *
17466188 AAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATG-AAAATATAAGTAAAAAAAAGAA
452 AAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAAGAAAAAAAAAGAA
*
17466252 AAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAACAA
517 AAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAAC-ACGA
*
17466317 TAAATAAAAAAAG--AAGAAAAGTAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAA
581 TAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAA
* * *
17466380 TAAAGAAAGAAATAAAAAAGAAAAAAATATTAAAACAAAACAAATAAAATAAATAAAAT
646 TAAAGAAAGAAATAAAAAAG-AAAAAATATTAAAGC-AAA-AAA-AAATTATATAAAAT
*
17466439 GCAATAAAATATAAAATAAAAATAAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAG-AAAA
1 ---ATAAAA-AT---A-AAAAAT-AAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAA
* *
17466503 AAATATTTTAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAA
57 AAATATTTGAAAAAAAACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAA
17466568 TTCAAAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAA-GCAAAAAAGA
122 TTCAAAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACG-AAAAAAGA
*
17466632 AAATGCAAC-AAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAACAA-AAATTTGTAA
186 AAATGCAACAAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTAA
17466695 AAAAATTAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAAATCC----AA
251 AAAAATTAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAAT-AAAAATCCAAGGAA
* * *
17466756 GTGTAAAAAAAAATATGGAAACAAGAAATAAAAAGTATTTTACGAAAAAAATTAAAAAAACAAGA
315 GTGTAAAAAAAAA-ATGGAAACAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGA
* *
17466821 AAAAATAAAAAAA-GAAGATGCAAAAATATGAAATAAAAT---AAAAAAATGTTTTGTAGAAATT
379 AAAAATAAAAAAATGAAAAGGCAAAAATATGAAATAAAATAAAAAAAAAATGTTTTGTAGAAATT
17466882 TTTAAAACAAA-AAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATG-AAAAAATAAGTAAA
444 TTTAAAACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAAG--AA
*
17466945 AAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAAAAAATAA
507 AAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAA
*
17467010 GAAACAGCGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAAAACAGTATAAAAATTTATG
572 GAAACA-CGATAAATAAAAAAAGAAAAGAAAAATAAAAAAATCCAAAACATTATAAAAATTTATG
* *
17467075 AAAATATAAAGAAAGATGAA-AAGTAAGAAAA-ACAAAAATATTAAAGCAAAACAAAAAATATAA
636 AAAATATAAATAAAGA--AAGAAATAA-AAAAGA-AAAAATATTAAAG-----C-----A-A-AA
17467138 ATAAAATACAATAAAATATAAAAT
685 A-AAAAT----T---ATATAAAAT
* *
17467162 ATAAAAAGTAAGAAAATAAAAAGTAAAAAAAGACAAAAATGAAATGAGATGAGAAAATAGAAAAA
1 ATAAAAA-T------A-AAAAA-TAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAA
* * * *
17467227 AAATATTTTAAAAAATACAAAAAATTGAAAAATATATAAGATATAATAAGGAAACAATATAAAAA
57 AAATATTTGAAAAAAAACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAA
17467292 TTCAAAGACAAAAAATT-AAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAA
122 TTCAAAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAA
* * *
17467356 AATTCAAC--AAAAAGACTATAAGAATTTAAAAATG-AAATAAAAAATAAAAAAAAATTTGTAAA
187 AATGCAACAAAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTAAA
17467418 AAAATTAAGAAAAGAAT-AAAAT-AGAAAGACAAAAGATTTATGAAAAATTAAAAATCCAAGGAA
252 AAAATTAAGAAAAGAATAAAAATGA-AAAGACAAAAGATTTATGAAAAA-TAAAAATCCAAGGAA
*
17467481 GTGTAAAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTACGAAAAAAATTAGAAAAACAAGA
315 GTGT-AAAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGA
*
17467546 AAAAAT-AAAAAATGAAAAGGCAAAAATATGAAATAAAAT--AAAAAAAATGTTTTGTAAAAATT
379 AAAAATAAAAAAATGAAAAGGCAAAAATATGAAATAAAATAAAAAAAAAATGTTTTGTAGAAATT
*
17467608 TTTAAAACAAAGAAAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCGCATGAAAAAATACGTAA
444 TTTAAAACAAAG--AAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAA-A--TAA
* * *
17467673 AAAAAAAAAAGAAAAATTCAAAAGGGAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAA
504 GAAAAAAAAAGAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAA
** * *
17467738 TAACCAACAACGATAAAT-AAAAAAGATAAAAAAAAATAAAAAAATTCAAAACATTATAAAAATT
569 TAAGAAAC-ACGATAAATAAAAAAAGA-AAAGAAAAATAAAAAAATCCAAAACATTATAAAAA-T
*
17467802 TTATGAAAATATAAATAAAGAAAGAAAAAAAAAATAAAAAGAAAAAATATTAAAGCAAAACAAAA
631 TTATGAAAATATAAATAAAGAAAG-----AAATA-AAAAAGAAAAAATATTAAAGCAAAA-AAAA
* *
17467867 AATATA-AATAAA
689 ATTATATAA-AAT
*
17467879 AT-AAAATAAAATATAAA
1 ATAAAAATAAAAAATAAA
17467896 TATAAAATAT
Statistics
Matches: 3161, Mismatches: 229, Indels: 479
0.82 0.06 0.12
Matches are distributed among these distances:
696 6 0.00
697 88 0.03
698 3 0.00
699 2 0.00
700 14 0.00
701 65 0.02
702 104 0.03
703 306 0.10
704 41 0.01
705 144 0.05
706 241 0.08
707 32 0.01
708 79 0.02
709 3 0.00
710 9 0.00
711 26 0.01
712 5 0.00
713 2 0.00
714 6 0.00
715 6 0.00
716 15 0.00
717 15 0.00
718 10 0.00
719 15 0.00
720 13 0.00
721 58 0.02
722 66 0.02
723 172 0.05
724 105 0.03
725 94 0.03
726 63 0.02
727 28 0.01
728 21 0.01
729 68 0.02
730 26 0.01
731 126 0.04
732 100 0.03
733 54 0.02
734 141 0.04
735 240 0.08
736 174 0.06
737 30 0.01
738 23 0.01
739 31 0.01
740 1 0.00
741 93 0.03
742 22 0.01
743 89 0.03
744 21 0.01
745 45 0.01
746 10 0.00
747 10 0.00
ACGTcount: A:0.68, C:0.04, G:0.10, T:0.17
Consensus pattern (700 bp):
ATAAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAACGAGAAAATAGAAAAAAAATATTTG
AAAAAAAACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGAC
AAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACA
AAAAAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAGAAATTTGTAAAAAAATTAAG
AAAAGAATAAAAATGAAAAGACAAAAGATTTATGAAAAATAAAAATCCAAGGAAGTGTAAAAAAA
AAATGGAAACAAGAAATAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGAAAAAATAAAAAA
ATGAAAAGGCAAAAATATGAAATAAAATAAAAAAAAAATGTTTTGTAGAAATTTTTAAAACAAAG
AAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAAGAAAAAAAAAGAAAAAT
TTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACACGATAAAT
AAAAAAAGAAAAGAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAAAG
AAAGAAATAAAAAAGAAAAAATATTAAAGCAAAAAAAAATTATATAAAAT
Found at i:17465001 original size:7 final size:7
Alignment explanation
Indices: 17464964--17465029 Score: 69
Period size: 7 Copynumber: 9.3 Consensus size: 7
17464954 ATTAGAATAC
17464964 AATAAAA
1 AATAAAA
*
17464971 TATAAAA
1 AATAAAA
*
17464978 TATAAAA
1 AATAAAA
*
17464985 AGTAAGAA
1 AATAA-AA
17464993 AATAAAA
1 AATAAAA
**
17465000 AATAATG
1 AATAAAA
*
17465007 AATCAAA
1 AATAAAA
17465014 AATAAAA
1 AATAAAA
17465021 AATAAAA
1 AATAAAA
17465028 AA
1 AA
17465030 AGACAAAAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
7 42 0.88
8 6 0.12
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.18
Consensus pattern (7 bp):
AATAAAA
Found at i:17465448 original size:736 final size:736
Alignment explanation
Indices: 17464265--17466460 Score: 3557
Period size: 735 Copynumber: 3.0 Consensus size: 736
17464255 TATAAAATAT
* * *
17464265 AAAAAGTAAGAAAATAAAAAAATACAAAAATGAAATGAAACGAGAAAATAGAAAAAAAATATTTG
1 AAAAA-TAA-AAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAG-AAAAAAATATTTT
*
17464330 AAAAAAAACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGAC
63 AAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGAC
17464395 AAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACA
128 AAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAAC-
**
17464460 AAAAAAAAACTCCAAGAATTTAAAAAATGAAAATAAAAAATAAAAAGAAATTTGTGAAAAAATTA
192 AAAAAAAAACTATAAGAATTT-AAAAATGAAAATAAAAAATAAAAA-AAATTTGTGAAAAAATTA
17464525 AGAAAAGAATAAAAATGGAAAGACAACTGATTTATGAAAAATAAAAATTCCAAGGAAGTGTAAAA
255 AGAAAAGAATAAAAATGGAAAGACAA--GATTTATGAAAAA-AAAAA-TCCAAGGAAGTGT-AAA
17464590 AAAAAATGGAAACAAGAAATAAAAAGAATTTTGTGAAAAAAATTAGAAAAACAAGAAAAAAT--A
315 AAAAAATGGAAACAAGAAATAAAAAGAATTTTG-GAAAAAAATTAGAAAAACAAGAAAAAATAAA
17464653 AAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAAA
379 AAAAATGAAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAAA
17464718 ACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAAGGAAAAAAAAA
444 ACAAAGAAAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAA-G-AAAAAAAA
17464783 GAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAA
507 GAAAAATTTAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAA
*
17464848 CGGTAAAT-AAAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAA
572 CGATAAATAAAAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAA
*
17464912 AGAAAT-AAAAAGAAAAAAATATTAAAGCAAAAAAAAATTATAATTAGAATACAATAAAATATAA
637 AGAAATAAAAAAGAAAAAAATATTAAAGCAAAAAAAAATTATAATTAAAATACAATAAAATATAA
17464976 AATATAAAAAGTAAGAAAATAAAAAATAATGAATC
702 AATATAAAAAGTAAGAAAATAAAAAATAATGAATC
17465011 AAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTTTAAA
1 AAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTTTAAA
*
17465076 AAATACAAAAAATTGAAAAACATGTAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAA
66 AAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAA
17465141 AAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAAC-AAA
131 AAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAA
17465205 AAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAAAA-TTGTGAAAAAATTAAGAAAA
196 AAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAAAATTTGTGAAAAAATTAAGAAAA
*
17465269 GAATAAAAATGAAAAGACAAGATTTATGAAAAAAAAAATCCAAGGAAGTGTGAAAAAAAAATGGA
261 GAATAAAAATGGAAAGACAAGATTTATGAAAAAAAAAATCCAAGGAAGTGT-AAAAAAAAATGGA
*
17465334 AACAAGAAACAAAAAGAATTTTGCGAAAAAAATTAGAAAAACAAGAAAAAATAAAAAAAATGAAG
325 AACAAGAAATAAAAAGAATTTTG-GAAAAAAATTAGAAAAACAAGAAAAAATAAAAAAAATGAAG
17465399 AGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAA
389 AGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAA
* *
17465464 AAAGTGAAAACAAAAGAAAATATGAAAGCACATGAACAAAATAAG-----TAA-AAAAA---AAA
454 AAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAAGAAAAAAAAGAAAAATTTAAA
17465520 A--AAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAA
519 AGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAACGATAAAT----
17465583 AAAGAAAAGAAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAG
580 -----AAA-AAAAATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAG
*
17465648 AAATAAAAAAGGAAAAAATATTAAAGCAAAAAAAAATTATAATTAAAATACAATAAAATATAAAA
639 AAATAAAAAAGAAAAAAATATTAAAGCAAAAAAAAATTATAATTAAAATACAATAAAATATAAAA
*
17465713 TATAAAAAGTAAGAAAATCAAAAATAATGAATC
704 TATAAAAAGTAAGAAAATAAAAAATAATGAATC
17465746 AAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTTTAAA
1 AAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTTTAAA
17465811 AAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAA
66 AAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAA
* * *
17465876 AAATTGAAAAAGAGAAAGGTTAATGGAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAA
131 AAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAA
17465941 AAAAACTATAAGAATTTAAAAATGAAAAT-AAAAATAAAAAAAATTTGTGAAAAAATTAAGAAAA
196 AAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAAAATTTGTGAAAAAATTAAGAAAA
*
17466005 GAATAAAAATGGAAAGACAAAAGATTTATGAAAAATAAAAAATCTAAGGAAGTGTAAAAAAAAAT
261 GAATAAAAATGGAAAGAC--AAGATTTATG-AAAA-AAAAAATCCAAGGAAGTGTAAAAAAAAAT
*
17466070 GGAAACAAGAAATAAAAAGAATTTTGGAAAAAAAATTAGAAAAAC-----AACA-AAAAAAAATG
322 GGAAACAAGAAATAAAAAGAATTTTGG-AAAAAAATTAGAAAAACAAGAAAAAATAAAAAAAATG
* * *
17466129 AAGAGGAAAAAATTTGAAATAAAAT-AAAAGAAAAAATGTTTTGTAGAAATTTTTATAACAAAGA
386 AAGAGGCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGA
*
17466193 AAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATG-AAAATATAAGTAAAAAAAAGAAAAATT
451 AAAAAAGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAAG-AAAAAAAAGAAAAATT
*
17466257 TAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAACAATAAAT
515 TAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAACGATAAAT
17466322 AAAAAAAGAAGAAAAGTAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAA
580 -----AA-AA-AAAA-TAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAA
* * * *
17466387 AGAAATAAAAAAGAAAAAAATATTAAAACAAAACAAATAA-AATAAATAAAATGCAATAAAATAT
637 AGAAATAAAAAAGAAAAAAATATTAAAGCAAAA-AAA-AATTATAATTAAAATACAATAAAATAT
17466451 AAAATA-AAAA
700 AAAATATAAAA
17466461 TAAAAAAAAG
Statistics
Matches: 1374, Mismatches: 38, Indels: 81
0.92 0.03 0.05
Matches are distributed among these distances:
723 57 0.04
725 4 0.00
728 5 0.00
729 2 0.00
731 8 0.01
732 75 0.05
733 35 0.03
734 139 0.10
735 297 0.22
736 201 0.15
737 2 0.00
738 55 0.04
739 66 0.05
740 47 0.03
741 106 0.08
742 30 0.02
743 198 0.14
744 39 0.03
745 3 0.00
746 5 0.00
ACGTcount: A:0.68, C:0.04, G:0.11, T:0.17
Consensus pattern (736 bp):
AAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTTTAAA
AAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAGACAAA
AAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATGCAACAAAA
AAAAACTATAAGAATTTAAAAATGAAAATAAAAAATAAAAAAAATTTGTGAAAAAATTAAGAAAA
GAATAAAAATGGAAAGACAAGATTTATGAAAAAAAAAATCCAAGGAAGTGTAAAAAAAAATGGAA
ACAAGAAATAAAAAGAATTTTGGAAAAAAATTAGAAAAACAAGAAAAAATAAAAAAAATGAAGAG
GCAAAAATATGAAATAAAATAAAAAGAAAAAATGTTTTGTAGAAATTTTTAAAACAAAGAAAAAA
AGTGAAAACAAAAGAAAATATGAAAGCACATGAAAAAAATAAGAAAAAAAAGAAAAATTTAAAAG
GAAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAAGAAACAACGATAAATAAAAAA
AATAAAAAAATCCAAAACATTATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAAGA
AAAAAATATTAAAGCAAAAAAAAATTATAATTAAAATACAATAAAATATAAAATATAAAAAGTAA
GAAAATAAAAAATAATGAATC
Found at i:17465764 original size:7 final size:7
Alignment explanation
Indices: 17465699--17465764 Score: 60
Period size: 7 Copynumber: 9.3 Consensus size: 7
17465689 ATTAAAATAC
17465699 AATAAAA
1 AATAAAA
*
17465706 TATAAAA
1 AATAAAA
*
17465713 TATAAAA
1 AATAAAA
*
17465720 AGTAAGAA
1 AATAA-AA
*
17465728 AATCAAA
1 AATAAAA
**
17465735 AATAATG
1 AATAAAA
*
17465742 AATCAAA
1 AATAAAA
17465749 AATAAAA
1 AATAAAA
17465756 AATAAAA
1 AATAAAA
17465763 AA
1 AA
17465765 AGACAAAAAT
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
7 41 0.89
8 5 0.11
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (7 bp):
AATAAAA
Found at i:17466399 original size:15 final size:16
Alignment explanation
Indices: 17466370--17466408 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
17466360 AAAATTTATG
*
17466370 AAAATATAAATAAAGA
1 AAAAAATAAATAAAGA
*
17466386 AAGAAATAAA-AAAGA
1 AAAAAATAAATAAAGA
17466401 AAAAAATA
1 AAAAAATA
17466409 TTAAAACAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.79, C:0.00, G:0.08, T:0.13
Consensus pattern (16 bp):
AAAAAATAAATAAAGA
Found at i:17466825 original size:19 final size:18
Alignment explanation
Indices: 17466801--17466838 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
17466791 TATTTTACGA
17466801 AAAAAATTAAAAAAACAAG
1 AAAAAA-TAAAAAAACAAG
*
17466820 AAAAAATAAAAAAAGAAG
1 AAAAAATAAAAAAACAAG
17466838 A
1 A
17466839 TGCAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.82, C:0.03, G:0.08, T:0.08
Consensus pattern (18 bp):
AAAAAATAAAAAAACAAG
Found at i:17467138 original size:19 final size:19
Alignment explanation
Indices: 17467099--17467159 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
17467089 GATGAAAAGT
17467099 AAGAAAAAC-AAAAATATTA
1 AAGAAAAACAAAAAATA-TA
*
17467118 AAGCAAAACAAAAAATATA
1 AAGAAAAACAAAAAATATA
*
17467137 AATAAAATACAATAAAATATA
1 AAGAAAA-ACAA-AAAATATA
17467158 AA
1 AA
17467160 ATATAAAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 15 0.42
20 11 0.31
21 10 0.28
ACGTcount: A:0.74, C:0.07, G:0.03, T:0.16
Consensus pattern (19 bp):
AAGAAAAACAAAAAATATA
Found at i:17467180 original size:15 final size:14
Alignment explanation
Indices: 17467147--17467191 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
17467137 AATAAAATAC
17467147 AATAAAATA-TAAAA
1 AATAAAA-AGTAAAA
*
17467161 TATAAAAAGTAAGAA
1 AATAAAAAGTAA-AA
17467176 AATAAAAAGTAAAA
1 AATAAAAAGTAAAA
17467190 AA
1 AA
17467192 AGACAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 13 0.48
15 13 0.48
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.18
Consensus pattern (14 bp):
AATAAAAAGTAAAA
Found at i:17467192 original size:15 final size:14
Alignment explanation
Indices: 17467127--17467192 Score: 53
Period size: 15 Copynumber: 4.4 Consensus size: 14
17467117 AAAGCAAAAC
*
17467127 AAAAAATATAAATA
1 AAAAAATAAAAATA
17467141 AAATACAAT-AAAATA
1 AAA-A-AATAAAAATA
*
17467156 TAAAATATAAAAAGTA
1 -AAAAAATAAAAA-TA
*
17467172 AGAAAATAAAAAGTA
1 AAAAAATAAAAA-TA
17467187 AAAAAA
1 AAAAAA
17467193 GACAAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 5 0.12
15 29 0.69
16 8 0.19
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.18
Consensus pattern (14 bp):
AAAAAATAAAAATA
Found at i:17467875 original size:6 final size:6
Alignment explanation
Indices: 17467866--17467908 Score: 56
Period size: 5 Copynumber: 7.5 Consensus size: 6
17467856 GCAAAACAAA
17467866 AAATAT AAATA- AAATA- AAATA- AAATAT AAATAT AAAATAT AAA
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT -AAATAT AAA
17467909 AAGTCAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
5 15 0.43
6 14 0.40
7 6 0.17
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (6 bp):
AAATAT
Found at i:17467884 original size:23 final size:23
Alignment explanation
Indices: 17467858--17467904 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
17467848 ATATTAAAGC
17467858 AAAACAAAAAATATAA-ATAAAAT
1 AAAACAAAAAATA-AATATAAAAT
* *
17467881 AAAATAAAATATAAATATAAAAT
1 AAAACAAAAAATAAATATAAAAT
17467904 A
1 A
17467905 TAAAAAGTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (23 bp):
AAAACAAAAAATAAATATAAAAT
Found at i:17467925 original size:7 final size:6
Alignment explanation
Indices: 17467807--17467953 Score: 59
Period size: 6 Copynumber: 22.7 Consensus size: 6
17467797 AAATTTTATG
* * * **
17467807 AAAATA TAAATA AAGAA-A GAAAAAA AAAATA AAAAGAA AAAATA TTAAAGCA
1 AAAATA AAAATA AA-AATA -AAAATA AAAATA AAAA-TA AAAATA --AAAATA
* *
17467859 AAACA-A AAAATA TAAAT- AAAAT- AAAATA AAATATA AATATA AAATATA
1 AAA-ATA AAAATA AAAATA AAAATA AAAATA AAA-ATA AAAATA AAA-ATA
*
17467907 AAAAGTCAA AAAATCA AAAATA ATGAATCA AAAATAA AAAATA AAAA
1 AAAA-T--A AAAAT-A AAAATA A-AAAT-A AAAAT-A AAAATA AAAA
17467954 AAGACAGAAA
Statistics
Matches: 109, Mismatches: 16, Indels: 32
0.69 0.10 0.20
Matches are distributed among these distances:
5 10 0.09
6 47 0.43
7 40 0.37
8 7 0.06
9 5 0.05
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:17467954 original size:7 final size:7
Alignment explanation
Indices: 17467858--17467954 Score: 63
Period size: 7 Copynumber: 13.6 Consensus size: 7
17467848 ATATTAAAGC
*
17467858 AAAACAA
1 AAAATAA
17467865 AAAAT-A
1 AAAATAA
*
17467871 TAAATAA
1 AAAATAA
17467878 AATAA-AA
1 AA-AATAA
17467885 TAAAATATA
1 -AAAATA-A
*
17467894 AATATAA
1 AAAATAA
*
17467901 AATATAA
1 AAAATAA
*
17467908 AAAGTCAA
1 AAAAT-AA
*
17467916 AAAATCA
1 AAAATAA
17467923 AAAATAA
1 AAAATAA
** *
17467930 TGAATCA
1 AAAATAA
17467937 AAAATAA
1 AAAATAA
17467944 AAAATAA
1 AAAATAA
17467951 AAAA
1 AAAA
17467955 AGACAGAAAT
Statistics
Matches: 69, Mismatches: 15, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
6 5 0.07
7 47 0.68
8 16 0.23
9 1 0.01
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (7 bp):
AAAATAA
Found at i:17468618 original size:13 final size:12
Alignment explanation
Indices: 17468602--17468764 Score: 63
Period size: 12 Copynumber: 13.3 Consensus size: 12
17468592 AAAATAAACC
17468602 AAAATAAAAAAT
1 AAAATAAAAAAT
17468614 GAAAAT-AAAAAT
1 -AAAATAAAAAAT
17468626 AAAATAAGAAAA-
1 AAAATAA-AAAAT
* ** **
17468638 AAATTTTAAAGC
1 AAAATAAAAAAT
* *
17468650 AAAACAAAAAAG
1 AAAATAAAAAAT
17468662 ATAAAT--AAAAT
1 A-AAATAAAAAAT
* *
17468673 ACAA-AAAATAT
1 AAAATAAAAAAT
*
17468684 AAAATATAAAAT
1 AAAATAAAAAAT
*
17468696 -AAA-CAAAAAT
1 AAAATAAAAAAT
*
17468706 ACAATAAAAATAT
1 AAAATAAAAA-AT
17468719 AAAAAGTAAGAAAAT
1 -AAAA-TAA-AAAAT
17468734 AAAA-AAAATTAAT
1 AAAATAAAA--AAT
17468747 CAAAAATAAAAAAT
1 --AAAATAAAAAAT
17468761 AAAA
1 AAAA
17468765 AAAGGCAAAT
Statistics
Matches: 110, Mismatches: 22, Indels: 37
0.65 0.13 0.22
Matches are distributed among these distances:
10 7 0.06
11 27 0.25
12 33 0.30
13 17 0.15
14 10 0.09
15 9 0.08
16 7 0.06
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.17
Consensus pattern (12 bp):
AAAATAAAAAAT
Found at i:17468623 original size:11 final size:11
Alignment explanation
Indices: 17468602--17468757 Score: 52
Period size: 11 Copynumber: 13.4 Consensus size: 11
17468592 AAAATAAACC
17468602 AAAATAAAAAAT
1 AAAAT-AAAAAT
17468614 GAAAATAAAAAT
1 -AAAATAAAAAT
17468626 AAAATAAGAAA-
1 AAAATAA-AAAT
* **
17468637 AAAATTTTAAAGC
1 AAAA--TAAAAAT
* *
17468650 AAAACAAAAAAG
1 AAAA-TAAAAAT
17468662 ATAAAT-AAAAT
1 A-AAATAAAAAT
*
17468673 ACAAA-AAATAT
1 A-AAATAAAAAT
17468684 AAAATATAAAAT
1 AAAATA-AAAAT
*
17468696 -AAACAAAAAT
1 AAAATAAAAAT
*
17468706 ACAATAAAAAT
1 AAAATAAAAAT
* *
17468717 ATAAA-AAGTAAG
1 A-AAATAA-AAAT
*
17468729 AAAATAAAAAA
1 AAAATAAAAAT
17468740 AATTAATCAAAAAT
1 AA--AAT-AAAAAT
17468754 AAAA
1 AAAA
17468758 AATAAAAAAA
Statistics
Matches: 107, Mismatches: 21, Indels: 31
0.67 0.13 0.19
Matches are distributed among these distances:
10 8 0.07
11 47 0.44
12 28 0.26
13 17 0.16
14 7 0.07
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:17468635 original size:49 final size:48
Alignment explanation
Indices: 17468563--17468724 Score: 115
Period size: 48 Copynumber: 3.5 Consensus size: 48
17468553 ATAAAAATTT
* * *
17468563 ATGAAAATATAAATAGAGAAAGAAATAAAAAAATAAACCAAAATAAAAA
1 ATGAAAATAAAAATAGAAAAAGAAA-AAAAAAATAAACCAAAACAAAAA
*** *
17468612 ATGAAAATAAAAATA-AAATAAGAAAAAAATTTTAAAGCAAAACAAAAA
1 ATGAAAATAAAAATAGAAA-AAGAAAAAAAAAATAAACCAAAACAAAAA
* * * *
17468660 A-GATAAAT-AAAATACAAAAA-ATATAAAATATAAA--ATAAAC-AAAA
1 ATGA-AAATAAAAATAGAAAAAGAAAAAAAAAATAAACCA-AAACAAAAA
* *
17468704 AT-ACAATAAAAATATAAAAAG
1 ATGAAAATAAAAATAGAAAAAG
17468725 TAAGAAAATA
Statistics
Matches: 93, Mismatches: 13, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
43 3 0.03
44 18 0.19
45 4 0.04
46 10 0.11
47 10 0.11
48 28 0.30
49 20 0.22
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.17
Consensus pattern (48 bp):
ATGAAAATAAAAATAGAAAAAGAAAAAAAAAATAAACCAAAACAAAAA
Found at i:17468680 original size:761 final size:760
Alignment explanation
Indices: 17467103--17468694 Score: 2239
Period size: 761 Copynumber: 2.1 Consensus size: 760
17467093 AAAAGTAAGA
17467103 AAAACAAAAATATTAAAGCAAAACAAAAAATATAAATAAAATACAATAAAATATAAAATATAAAA
1 AAAA-AAAAAT-TTAAAGCAAAACAAAAAATATAAATAAAATACAA-AAAATATAAAATATAAAA
* *
17467168 AGTAAGAAAATAAAAAGTAAAAAAAGACAAAAATGAAATGAGATGAGAAAATAGAAAAAAAATAT
63 AGTAAGAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAG-AAAAAAATAT
* *
17467233 TTTAAAAAATACAAAAAATTGAAAAATATATAAGATATAATAAGGAAACAATATAAAAATTCAAA
127 TTTAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAA
* * *
17467298 GACAAAAAATTAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACGAAAAAAGAAAATTCAA
192 AACAAAAAATTAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACCAAAAAAGAAAATGCAA
* * *
17467363 CAAAAAGACTATAAGAATTTAAAAATGAAATAAAAAATAAAAAAAAATTTGTAAAAAAATTAAGA
257 CAAAAAAAATATAAGAATTTAAAAATGAAATAAAAAATAAAAAAAAATTCGTAAAAAAATTAAGA
*
17467428 AAAGAATAAAATAGAAAGACAAAAGATTTATGAAAAATTAAAAATCCAAGGAAGTGTAAAAAAAA
322 AAAGAATAAAATAGAAAGACAAAAGATTTATGAAAAATAAAAAATCCAAGGAAGTGTAAAAAAAA
* * *
17467493 AAATGGAAACAAGAAATAAAAAGAATTTTACGAAAAAAATTAGAAAAACAAGAAAAAATAAAAAA
387 AAATGAAAACAAGAAATAAAAAAAATTGTA-GAAAAAAATTAGAAAAACAAGAAAAAATAAAAAA
*
17467558 TGAAAAGGCAAAAATATGAAATAAAATAAAAAAAATGTTTTGTAAAAATTTTTAAAACAAAGAAA
451 TGAAAAGGCAAAAATATGAAATAAAATAAAAAAAATGTTTTATAAAAATTTTTAAAACAAAG--A
* * *
17467623 AAAAAAGTGAAAACAAAAGAAAATATGAAAGCGCATGAAAAAATACGTAAAAAAAAAAAAGAAAA
514 AAAAAAGTGAAAACAAAAAAAAATATGAAAGCACATGAAAAAATAAGT-----AAAAAAAGAAAA
*
17467688 ATTCAAAAGGGAAAAGAGTTAATGAAAAATTATAAAAATACAATAGAAAATAACCAACAACGATA
574 ATTCAAAAGGGAAAAGAGTTAATGAAAAATTATAAAAATACAACAGAAAATAACCAACAACGATA
* *
17467753 AATAAAAAAGATAAAAAAAAATAAAAAAATTCAAAACATTATAAAAATTTTATGAAAATATAAAT
639 AATAAAAAAGAAAAAAAAAAATAAAAAAATCCAAAACATTATAAAAATTTTATGAAAATATAAAT
17467818 AAAGAAAGAAAAAAAAAATAAAAAGAAAAAATATTAAAGCAAAACAAAAAATATAAAT
704 AAAGAAAGAAAAAAAAAATAAAAAGAAAAAATA-TAAAGCAAAACAAAAAATATAAAT
* ** * * * **
17467876 AAAATAAAA--TAAAATATAAATATAAAATAT-AA-AAAGT-CAAAAAATCA-AAAATA-ATGAA
1 AAAAAAAAATTTAAAGCA-AAACAAAAAATATAAATAAAATACAAAAAAT-ATAAAATATAAAAA
* *
17467934 -TCA-AAAATAAAAAATAAAAAAAGACAGAAATGAAATGAAATGAGAAAATAG-AAAAAATATTT
64 GTAAGAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTT
17467996 TAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAAA
129 TAAAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAAA
** *
17468061 TTAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACCAAAAAAGGAAATGCAA-
194 CAAAAAATT-AAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACCAAAAAAGAAAATGCAAC
* *
17468125 AAAAAAAATATAAGAATTTAAAAATGAAAATTAAAAAT-AAAAAAAATTCGTGAAAAAATTAAGA
258 AAAAAAAATATAAGAATTTAAAAATG-AAATAAAAAATAAAAAAAAATTCGTAAAAAAATTAAGA
17468189 AAAGAATAAAAT-GAAAAGACAAAAGATTTATGAAAAATAAAAAAATCCAAGGAAGTGT-AAAAA
322 AAAGAATAAAATAG-AAAGACAAAAGATTTATGAAAAAT-AAAAAATCCAAGGAAGTGTAAAAAA
*
17468252 AAAAATGAAAACAAGAAATAAAAAAAATTGT-GAAAAAAATTAGAAAAACAAGAAAAAATTAAAA
385 AAAAATGAAAACAAGAAATAAAAAAAATTGTAGAAAAAAATTAGAAAAACAAGAAAAAATAAAAA
* * *
17468316 ATGAAGAGGCAAAAATATGAAATAAAATAAAAAAAA-GTTTTATAGAAATTTTTAAAACAATG-A
450 ATGAAAAGGCAAAAATATGAAATAAAATAAAAAAAATGTTTTATAAAAATTTTTAAAACAAAGAA
*
17468379 AAAAAGTGAAAACAAAAAAAAATATATGAAAGCACATGAAAAAATAAGT-AAAAAA-AAAAATTT
515 AAAAAGTGAAAAC-AAAAAAAA-ATATGAAAGCACATGAAAAAATAAGTAAAAAAAGAAAAATTC
*
17468442 AAAA-GGAAAATGAGTTAATGAAAAATTATAAAAATACAACAGAAAATAACCAACAATGATAAAT
578 AAAAGGGAAAA-GAGTTAATGAAAAATTATAAAAATACAACAGAAAATAACCAACAACGATAAAT
17468506 AAAAAAAGAAAAAAAAGAGATAGAAAATTAAAAAAATCCAAAACATTATAAAAA-TTTATGAAAA
642 -AAAAAAG----AAAA-A-A-A-AAAA-TAAAAAAATCCAAAACATTATAAAAATTTTATGAAAA
* * * *
17468570 TATAAATAGAGAAAGAAATAAAAAAATAAACCAA-AATAAA-A-AATG-AAAA-TAAAAATA-AA
697 TATAAATAAAGAAAGAAA-AAAAAAATAAA--AAGAAAAAATATAAAGCAAAACAAAAAATATAA
17468629 AT
759 AT
*
17468631 AAGAAAAAAATTTTAAAGCAAAACAAAAAAGATAAATAAAATACAAAAAATATAAAATATAAAA
1 AA-AAAAAAA-TTTAAAGCAAAACAAAAAATATAAATAAAATACAAAAAATATAAAATATAAAA
17468695 TAAACAAAAA
Statistics
Matches: 733, Mismatches: 55, Indels: 73
0.85 0.06 0.08
Matches are distributed among these distances:
749 6 0.01
750 62 0.08
751 13 0.02
755 23 0.03
756 21 0.03
757 29 0.04
758 37 0.05
759 105 0.14
760 43 0.06
761 216 0.29
762 83 0.11
763 45 0.06
764 2 0.00
765 3 0.00
766 11 0.02
767 4 0.01
768 4 0.01
769 7 0.01
770 11 0.02
772 4 0.01
773 4 0.01
ACGTcount: A:0.68, C:0.05, G:0.09, T:0.18
Consensus pattern (760 bp):
AAAAAAAAATTTAAAGCAAAACAAAAAATATAAATAAAATACAAAAAATATAAAATATAAAAAGT
AAGAAAATAAAAAATAAAAAAAGACAAAAATGAAATGAAATGAGAAAATAGAAAAAAATATTTTA
AAAAATACAAAAAATTGAAAAACATATAAGATATAATAAGAAAACAATATAAAAATTCAAAAACA
AAAAATTAAAAAGAGAAAAGTTAATGCAAAATAAAAATGAAAACCAAAAAAGAAAATGCAACAAA
AAAAATATAAGAATTTAAAAATGAAATAAAAAATAAAAAAAAATTCGTAAAAAAATTAAGAAAAG
AATAAAATAGAAAGACAAAAGATTTATGAAAAATAAAAAATCCAAGGAAGTGTAAAAAAAAAAAT
GAAAACAAGAAATAAAAAAAATTGTAGAAAAAAATTAGAAAAACAAGAAAAAATAAAAAATGAAA
AGGCAAAAATATGAAATAAAATAAAAAAAATGTTTTATAAAAATTTTTAAAACAAAGAAAAAAAG
TGAAAACAAAAAAAAATATGAAAGCACATGAAAAAATAAGTAAAAAAAGAAAAATTCAAAAGGGA
AAAGAGTTAATGAAAAATTATAAAAATACAACAGAAAATAACCAACAACGATAAATAAAAAAGAA
AAAAAAAAATAAAAAAATCCAAAACATTATAAAAATTTTATGAAAATATAAATAAAGAAAGAAAA
AAAAAATAAAAAGAAAAAATATAAAGCAAAACAAAAAATATAAAT
Found at i:17468692 original size:23 final size:21
Alignment explanation
Indices: 17468666--17468767 Score: 73
Period size: 22 Copynumber: 4.7 Consensus size: 21
17468656 AAAAAGATAA
17468666 ATAAAATACAAAAAATATAAAAT
1 ATAAAATA-AAAAAA-ATAAAAT
*
17468689 ATAAAATAAACAAAAATACAAT
1 ATAAAATAAA-AAAAATAAAAT
* * *
17468711 A-AAAATATAAAAAGTAAGAAA
1 ATAAAATAAAAAAAATAA-AAT
**
17468732 ATAAAA-AAAATTAATCAAAAAT
1 ATAAAATAAAAAAAAT--AAAAT
*
17468754 AAAAAATAAAAAAA
1 ATAAAATAAAAAAA
17468768 GGCAAATTGA
Statistics
Matches: 60, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
20 6 0.10
21 15 0.25
22 20 0.33
23 19 0.32
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (21 bp):
ATAAAATAAAAAAAATAAAAT
Found at i:17468706 original size:10 final size:9
Alignment explanation
Indices: 17468585--17468767 Score: 63
Period size: 10 Copynumber: 19.2 Consensus size: 9
17468575 ATAGAGAAAG
17468585 AAAT-AAAA
1 AAATAAAAA
*
17468593 AAATAAACCA
1 AAATAAA-AA
17468603 AAATAAAAA
1 AAATAAAAA
*
17468612 ATGAA-AATAA
1 A--AATAAAAA
17468622 AAATAAAATA
1 AAATAAAA-A
17468632 AGAA-AAAAA
1 A-AATAAAAA
*** *
17468641 TTTTAAAGCA
1 AAATAAA-AA
*
17468651 AAACAAAAA
1 AAATAAAAA
* *
17468660 AGATAAATA
1 AAATAAAAA
17468669 AAATACAAAA
1 AAATA-AAAA
17468679 AATATAAAATATA
1 AA-AT-AAA-A-A
17468692 AAATAAACAA
1 AAATAAA-AA
17468702 AAATACAATAA
1 AAATA-AA-AA
*
17468713 AAATATAAA
1 AAATAAAAA
* *
17468722 AAGT-AAGA
1 AAATAAAAA
17468730 AAATAAAAA
1 AAATAAAAA
*
17468739 AAATTAATCAA
1 AAA-TAA-AAA
17468750 AAAT--AAA
1 AAATAAAAA
17468757 AAATAAAAA
1 AAATAAAAA
17468766 AA
1 AA
17468768 GGCAAATTGA
Statistics
Matches: 127, Mismatches: 28, Indels: 39
0.65 0.14 0.20
Matches are distributed among these distances:
7 6 0.05
8 11 0.09
9 38 0.30
10 39 0.31
11 26 0.20
12 4 0.03
13 3 0.02
ACGTcount: A:0.76, C:0.04, G:0.03, T:0.16
Consensus pattern (9 bp):
AAATAAAAA
Found at i:17468719 original size:35 final size:34
Alignment explanation
Indices: 17468656--17468766 Score: 111
Period size: 37 Copynumber: 3.2 Consensus size: 34
17468646 AAGCAAAACA
*
17468656 AAAAAGATAAATAAAATAC-A-AAAAATATAAAAT
1 AAAAA-ATAAAAAAAATACAATAAAAATATAAAAT
*
17468689 ATAAAATAAACAAAAATACAATAAAAATATAAAAAGT
1 AAAAAATAAA-AAAAATACAATAAAAATAT-AAAA-T
* *
17468726 AAGAAAATAAAAAAAAT-TAATCAAAAATAAAAAAT
1 AA-AAAATAAAAAAAATACAAT-AAAAATATAAAAT
17468761 AAAAAA
1 AAAAAA
17468767 AGGCAAATTG
Statistics
Matches: 66, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
32 5 0.08
33 11 0.17
34 5 0.08
35 11 0.17
36 11 0.17
37 15 0.23
38 8 0.12
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.17
Consensus pattern (34 bp):
AAAAAATAAAAAAAATACAATAAAAATATAAAAT
Found at i:17468890 original size:22 final size:23
Alignment explanation
Indices: 17468846--17468905 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
17468836 AAAAAATTGA
*
17468846 AAAAC-ATATAAGAAATAATAAG
1 AAAACAATATAAAAAATAATAAG
*
17468868 AAAACAATATAAAAAATCA-AAG
1 AAAACAATATAAAAAATAATAAG
* *
17468890 ACAA-AATATTAAAAAT
1 AAAACAATATAAAAAAT
17468906 GAAAAAAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 11 0.33
22 11 0.33
23 11 0.33
ACGTcount: A:0.70, C:0.07, G:0.05, T:0.18
Consensus pattern (23 bp):
AAAACAATATAAAAAATAATAAG
Found at i:17472537 original size:879 final size:874
Alignment explanation
Indices: 17470592--17472817 Score: 3708
Period size: 879 Copynumber: 2.5 Consensus size: 874
17470582 TCTGTCATGC
*
17470592 CACAGAGAGAAAAACAAGAAGAAAACTCCCATACACACAGAGCCACACAAATTTTTAATCCTTAA
1 CACAAAGAGAAAAACAAG--G-AAACTCCCAT--ACAC--AGCCACACAAATTTTTAATCCTTAA
* * *
17470657 ATCCTACACACGGCCATA-TAAATTTAGAATCCATAA-T-TCC--C-CTGCAAGTCATTCTTGGA
59 ATCCTACACA----CATACT-ACTTTAGAATCCTTAATTCTCCTACACTGCAAGTCATTCTCGGA
* * * * *
17470716 CCACA-CAGCGCATTAAGTTTCATATAGACC-ATCAGATCAC-AACCACAC-AAA--ATGAACAA
119 GCACATC-GCACA-TAAGTTTCATAGAGACCAATGA-ATCACAAACCACACTAAAGGAAGAACAA
*
17470775 CCCAAGGGAATTTTCCAAAGTAAAGATACAAAGCCCTAATTTATGTAAAAATTTAAAAATGACAC
181 CCCAA-GGAATTTTCCAAAGTAAAGTTACAAAGCCCTAATTTATGTAAAAATTTAAAAATGACAC
17470840 AAGAAGAATCCAGAGACAATCTCAATGAGAAAGACACCAACTGAGAGCCTATGACAACATATATT
245 AAGAAGAATCCAGAGACAATCTCAAT--GAAAGACACCAACTGAGAGCCTATGACAACATATATT
*
17470905 TAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTTAAGCATTCAACCACAATGCATG
308 TAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTCAAGCATTCAACCACAATGCATG
*
17470970 TCAAAATTAAATTACAGAAATTGAACCTAGCAAACCAATCTGCCTTGTAACAAATAGAGTGAAAC
373 TCAAAATTAAATTACAGAAATTGAACCTAGCAAACCAATCTGCCCTGTAACAAATAGAGTGAAAC
* *
17471035 CAACAAAATAAAAACCTCCCTAAACACATACCTACACACACGAGGCACAGAAATTGAATTCACTG
438 CAACAAAATAAAAACCTCCCTAAACACATACCTACACACAAGAGGCACAAAAATTGAATTCACTG
* *
17471100 CTTGAAGCACACAAAGAAAAAAACAACAGGGAAACTCCCATACACACAGTCACATAAATTTTTAA
503 CTTAAAGCACACAAAGAAAAAAACAACAGGGAAACTCCCATACACACAGCCACATAAATTTTTAA
17471165 TCCTTAAATGCTACACAACCATAGAAATTTAGAATCCTTAATTCCCCCTACACTACAAAACAACA
568 TCCTTAAATGCTACACAACCATAGAAATTTAGAATCCTTAATTCCCCCTACACTACAAAACAACA
17471230 AGGAAACTCCCATACACATTTAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTTAA
633 AGGAAACTCCCATACACATTTAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTTAA
* *
17471295 ACATTTGACCACAACGCATGTCAAAATTAAGTTTCAGAAATTGAACCCAACAAACCAACTTGTTC
698 ACATTTGACCACAACGCATGTCAAAATTAAGTTTCAAAAATTGAACCCAACAAACCAACCTGTTC
* *
17471360 TATAACAAACAGAGTGAAATCAACAAAACAAAAAACTCCCAAAATACACCTACACACACATCAAT
763 TATAACAAACAAAGTGAAATCAACAAAACAAAAAACTCCCAAAATACACCTACACACACATCAAG
17471425 CACAGAAATTGAATTCAGCTAATCATGCAAGCCATTAGCTTAAAGCA
828 CACAGAAATTGAATTCAGCTAATCATGCAAGCCATTAGCTTAAAGCA
* *
17471472 CACAAAGAGAAACACAACAAGGAAACTCCCATACACAACCACACAAATTTTTAATCCTTAAATCT
1 CACAAAGAG-AA-A-AACAAGGAAACTCCCATACACAGCCACACAAATTTTTAATCCTTAAATCC
* *
17471537 TACACACATACAACTTTAGAATCCTTAATTCCCCCTACACTGCAAGTCATTCTCGGAGCACATCG
63 TACACACATACTACTTTAGAATCCTTAATT-CTCCTACACTGCAAGTCATTCTCGGAGCACATCG
17471602 CACATAAGTTTCATAGAGACCAATGAATCACAAACCACACTAAAGGAAG---AACCCAAGGAATT
127 CACATAAGTTTCATAGAGACCAATGAATCACAAACCACACTAAAGGAAGAACAACCCAAGGAATT
* *
17471664 TTTCAACGTAAAGTTACAAAGCCCTAATTTATGTAAAAATTTAAAAATGACACAAGAAGAATCCA
192 TTCCAAAGTAAAGTTACAAAGCCCTAATTTATGTAAAAATTTAAAAATGACACAAGAAGAATCCA
17471729 GAGACAATCTCAATGAAAGACACCAACTGAGAGCCTATGACAACATATATTTAGAGTTTCAAAGA
257 GAGACAATCTCAATGAAAGACACCAACTGAGAGCCTATGACAACATATATTTAGAGTTTCAAAGA
*
17471794 ATCCAACAAAAGGAAATAATCTTCCTTTCAAGCATTCAACCACAATGCATGTCAAAATTAAATTA
322 ATCCAGCAAAAGGAAATAATCTTCCTTTCAAGCATTCAACCACAATGCATGTCAAAATTAAATTA
*
17471859 CAGAAATTGAACCTAGCAAACCAATCTGCCCTGTAACAAATAAAGTGAAACCAACAAAATAAAAA
387 CAGAAATTGAACCTAGCAAACCAATCTGCCCTGTAACAAATAGAGTGAAACCAACAAAATAAAAA
17471924 CCTCCCTAAACACATACCTACGAACACAAGAGGCACAAAAATTGAATTCACTGCTTAAAGCACAC
452 CCTCCCTAAACACATACCTAC--ACACAAGAGGCACAAAAATTGAATTCACTGCTTAAAGCACAC
* * * *
17471989 AAGGAGAAAAATAATAGGGAAACTCCCATACACACAGCCACATAAATTTTTAATCCTTAAATGCT
515 AAAGAAAAAAACAACAGGGAAACTCCCATACACACAGCCACATAAATTTTTAATCCTTAAATGCT
* *
17472054 ACACAACCATAGAAATTTAGAATCTTTAATTCCTCCTACACTACAAAACAACAAGGAAACTCCCA
580 ACACAACCATAGAAATTTAGAATCCTTAATTCCCCCTACACTACAAAACAACAAGGAAACTCCCA
17472119 TACACATATTTAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTTAAACATTTGACC
645 TACAC--ATTTAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTTAAACATTTGACC
* * *
17472184 ACAATGCATGTCAAAATTAAGTTTCAAAAATTGAACCCAACGAACCAACCTGTTCTGTAACAAAC
708 ACAACGCATGTCAAAATTAAGTTTCAAAAATTGAACCCAACAAACCAACCTGTTCTATAACAAAC
*
17472249 AAAGTGAAATCAACAAAACAAAAAACTCCCAAAATACACCTACACACACATCAGGCACAGAAATT
773 AAAGTGAAATCAACAAAACAAAAAACTCCCAAAATACACCTACACACACATCAAGCACAGAAATT
*
17472314 GAATTCAGCTAATCATGCAAGCCATTAGCTTAGAGCA
838 GAATTCAGCTAATCATGCAAGCCATTAGCTTAAAGCA
17472351 CACAAAGAGAAAAACAAGGAAACTCCCATACACAGCCACACAAATTTTTAATCCTTAAATCCTAC
1 CACAAAGAGAAAAACAAGGAAACTCCCATACACAGCCACACAAATTTTTAATCCTTAAATCCTAC
17472416 ACACATACTACTTTAGAATCCTTAATTCTCCTTACACTGCAAGTCATTCTCGGAGCACATCGCAC
66 ACACATACTACTTTAGAATCCTTAATTCTCC-TACACTGCAAGTCATTCTCGGAGCACATCGCAC
17472481 ATAAGTTTCATAGAGACCAATGAATCACAAACCACACTAAAGGAAGAACAACCCAAGGAATTTTC
130 ATAAGTTTCATAGAGACCAATGAATCACAAACCACACTAAAGGAAGAACAACCCAAGGAATTTTC
17472546 CAAAGTAAAGTTACAAAGCCCTAATTTATGTAAAAATTTAAAAATGACACAAGAAGAATCCAGAG
195 CAAAGTAAAGTTACAAAGCCCTAATTTATGTAAAAATTTAAAAATGACACAAGAAGAATCCAGAG
17472611 ACAATCTCAATGAAAAAGACACCAACTGAGAGCCTATGACAACATATATTTAGAGTTTCAAAGAA
260 ACAATCTCAATG--AAAGACACCAACTGAGAGCCTATGACAACATATATTTAGAGTTTCAAAGAA
*
17472676 TCCAGCAAAAGGAAATAATCTTCCTTTCAAGCATTCAAGCACAATGCATGTCAAAATTAAATTAC
323 TCCAGCAAAAGGAAATAATCTTCCTTTCAAGCATTCAACCACAATGCATGTCAAAATTAAATTAC
* *
17472741 AGAAATTGAACCTAGCAAACCAATCTGTCCTGTAACAAATAGAGTGAAACCAACAAAATAAAACC
388 AGAAATTGAACCTAGCAAACCAATCTGCCCTGTAACAAATAGAGTGAAACCAACAAAATAAAAAC
17472806 CTCCCTAAACAC
453 CTCCCTAAACAC
17472818 NNNNNNNNNN
Statistics
Matches: 1270, Mismatches: 50, Indels: 51
0.93 0.04 0.04
Matches are distributed among these distances:
872 18 0.01
873 1 0.00
875 203 0.16
876 189 0.15
877 272 0.21
878 49 0.04
879 320 0.25
880 18 0.01
881 193 0.15
882 1 0.00
883 6 0.00
ACGTcount: A:0.44, C:0.23, G:0.11, T:0.21
Consensus pattern (874 bp):
CACAAAGAGAAAAACAAGGAAACTCCCATACACAGCCACACAAATTTTTAATCCTTAAATCCTAC
ACACATACTACTTTAGAATCCTTAATTCTCCTACACTGCAAGTCATTCTCGGAGCACATCGCACA
TAAGTTTCATAGAGACCAATGAATCACAAACCACACTAAAGGAAGAACAACCCAAGGAATTTTCC
AAAGTAAAGTTACAAAGCCCTAATTTATGTAAAAATTTAAAAATGACACAAGAAGAATCCAGAGA
CAATCTCAATGAAAGACACCAACTGAGAGCCTATGACAACATATATTTAGAGTTTCAAAGAATCC
AGCAAAAGGAAATAATCTTCCTTTCAAGCATTCAACCACAATGCATGTCAAAATTAAATTACAGA
AATTGAACCTAGCAAACCAATCTGCCCTGTAACAAATAGAGTGAAACCAACAAAATAAAAACCTC
CCTAAACACATACCTACACACAAGAGGCACAAAAATTGAATTCACTGCTTAAAGCACACAAAGAA
AAAAACAACAGGGAAACTCCCATACACACAGCCACATAAATTTTTAATCCTTAAATGCTACACAA
CCATAGAAATTTAGAATCCTTAATTCCCCCTACACTACAAAACAACAAGGAAACTCCCATACACA
TTTAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTTAAACATTTGACCACAACGCA
TGTCAAAATTAAGTTTCAAAAATTGAACCCAACAAACCAACCTGTTCTATAACAAACAAAGTGAA
ATCAACAAAACAAAAAACTCCCAAAATACACCTACACACACATCAAGCACAGAAATTGAATTCAG
CTAATCATGCAAGCCATTAGCTTAAAGCA
Found at i:17474659 original size:25 final size:26
Alignment explanation
Indices: 17474625--17474676 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17474615 GTTGACTTAG
*
17474625 GCATATGGAGTT-ATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17474650 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17474676 G
1 G
17474677 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17475554 original size:26 final size:26
Alignment explanation
Indices: 17475517--17475569 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17475507 GTTGACTTAG
*
17475517 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17475543 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17475569 G
1 G
17475570 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.