Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 98 of 117
Found at i:17476474 original size:26 final size:26
Alignment explanation
Indices: 17476422--17476474 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17476412 GTTGACTTAG
* *
17476422 GCATACGAAGTTCATTCCCATTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17476448 GCATAC-AGAGTTCATTCTCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
17476474 G
1 G
17476475 ATCTGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17478203 original size:27 final size:26
Alignment explanation
Indices: 17478163--17478216 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
17478153 GTTAACTTAG
17478163 GCATACGGAATTCATTCCCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
* * *
17478189 GCATAACGGAGTTCATTCTCAGTCTAA
1 GCAT-ACGGAATTCATTCCCAATCTAA
17478216 G
1 G
17478217 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:17479098 original size:26 final size:27
Alignment explanation
Indices: 17479061--17479114 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
17479051 GTTGACTTAG
17479061 GCATACGAAG-TTCATTCCCAGTCTAA
1 GCATACGAAGTTTCATTCCCAGTCTAA
*
17479087 GCATACGGAGTTTCATTCCCAGTCTAA
1 GCATACGAAGTTTCATTCCCAGTCTAA
17479114 G
1 G
17479115 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATACGAAGTTTCATTCCCAGTCTAA
Found at i:17481244 original size:26 final size:26
Alignment explanation
Indices: 17481207--17481271 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
17481197 CGTGGGTTGA
*
17481207 CTAAGGCATACGGCCTTCATTCCCAGT
1 CTAA-GCATACGGACTTCATTCCCAGT
*
17481234 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGACTTCATTCCCAGT
17481260 CTAAG-AT-CGGAC
1 CTAAGCATACGGAC
17481272 CAGATCGAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
24 4 0.11
25 2 0.06
26 25 0.71
27 4 0.11
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
CTAAGCATACGGACTTCATTCCCAGT
Found at i:17481901 original size:886 final size:884
Alignment explanation
Indices: 17479428--17483804 Score: 5580
Period size: 886 Copynumber: 4.9 Consensus size: 884
17479418 GCTGACTTAG
* * * * ** * * * *
17479428 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTAACGGTAGCGCATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCAGCAGCACATGCTGGG
* * * * *
17479493 CTAGGGCATGTGCTGGAGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG---CA----C----CATCGTCGAAGA
* * * *
17479558 ACCTGACCGACGGTATTGGGGTTCTGATGATCGGGGGGGTCGGGGGGTGTACGCACATGATGTGC
120 ACCTGACCGACGGCATTGGGGTTCCG-GGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGC
*
17479623 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
183 -ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACA
* *
17479688 -CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
247 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* * *
17479752 GGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTAAATTTTTTTGT
312 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** *
17479817 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTAATTTCAAAAAAA
377 GCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
*
17479882 TTTT-AAAAATCACCGAACCCGTAAAGATGTTT-AAAAATCATGAAAAATA-AAAACGAGTCGTC
441 TTTTAAAAAATC-CCGAA-CCGTAAA-AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
17479944 TTAGCCATTG-AA--TCTCGTTGACGGCTTTAAGGGGGACCGTTGTATGAATTTACAAGCCAT-A
503 TT-GCCA-TGAAACTTCACG-TGAAGGC-TTAA--GGGACCATTGTATGAATTTACAAGCCATAA
* *
17480005 AAATGGCCATTGGCATGTAGAAATATGAAAGATGTGCCTAAACCCCACCTACCACCCTATCAATC
562 AAATGG-CATTGGCATGCAGAAATATG-AAGATGTGCCTAAA-CCCACCTACCACCCTATCGATC
* * *
17480070 CACGGCTTTGCGCACTCCCGTCTCTCT-GACGACCATAGTGCCCGCCCGCCCGGCCCGCCCGCAC
624 CACGGC-TTGCGCA-TCCCGTCTCTCTGGCCGA-CGTAGT----GCCCGCCC-GCCCGCCCGCTC
* * * *
17480134 GTTGTGCGTTGGTTGGCTT-GGCATTCGGAGTTAATTCCTAGTCTAAGATCAGACCAGACCGAGG
681 GTT-T-CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* ** * * * * * * *
17480198 GTTACGGTAGCAAGATCAACAGCATGAAGCGGGGGACCCGGCTGATCCCCTGG-TTGCGTATCCT
744 GTTCCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCC-GGCTTACGCATCCC
* * * * * **
17480262 GCCCCTTTGGCCGGCTGAGCACCCCCATGCTCGTTCCGTGGGTTGACTTAGGCATATAGAGTTCA
808 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
17480327 TTCCCAGTCTAA
873 TTCCCAGTCTAA
* * * * **
17480339 GCATACGGAGTTCATTCGCAGTCCAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCAGCAGCACATGCTGGG
* * * * *
17480404 CTCGGGCATTTGCTGGTGCTGCATTTTTCTTCATCGGGGTGCCATCACCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-CCGGG-G----CACC--ATCGTCG--A-AGA
* * * * * * *
17480469 ATCTGATCGACGACATTGGGGTTCCGGCAATCGGGCGTGCCGGGGGGTGTGCACACATGATGTGC
120 ACCTGACCGACGGCATTGGGGTTCCGG-GATCGGG-GGGTCGGGGGGTGTGCGCACATGATGTGC
* * * *
17480534 GATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTACCCCTTATCAAACCTCCAAAACTCACA
183 -ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACA
* *
17480599 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATGAAAGTGTCTAAAATG
247 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* *
17480664 GGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
312 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * *
17480729 GCATGCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTCAGGGCCAAAAATCCTTCCGAAAAAA
377 GCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * *
17480794 TTTAAAAAAATCCCAAACCGTAAAAATTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
441 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
17480859 CCAAGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCAT
506 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
17480924 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTAC
571 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
17480989 ATCCCGCCTCTCTAGCCAACGTAGTGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGG
636 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
17481054 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTCCGGTAGCAAGATTGGTAG
701 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCCGGTAGCAAGATCGGCAG
* * * * * *
17481119 CACGCAGAAGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGATGAGCGGC
766 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* **
17481184 CGCACGCTCGTTTCGTGGGTTGACTAAGGCATACGGCCTTCATTCCCAGTCTAA
831 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17481238 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCAGCAGCACATGCTGGG
** *
17481303 CTCGGGCATGTGCTGGTGCCGCATTTTT-TTCGTCAGGGCACCATCGTCGAAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGAACCTGACCGAC
*
17481367 GGCATTGGGGTTTCGGGTATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCACTGGGTGCTGG
131 GGCATTGGGGTTCCGGG-ATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCA-TGGGTGCTGG
**
17481432 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGA
194 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGA
17481497 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
259 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
*
17481562 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAT
324 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA-
* *
17481627 AAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATC
388 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* * *
17481692 CCGAACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTC
453 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
17481757 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
518 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* ** *
17481822 ATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCTTGGCTTGCGCATCCTGTCTCTC
583 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
17481887 TGGCCGATGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGAAGTTC
648 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * ** *
17481952 ATTCCCAGTCTAAGATCACACCAGACTGA-GGTTGTGGCAGCAAGATCGGCAGCACGCAGAGGGG
713 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCCGGTAGCAAGATCGGCAGCACGCAGAGGGG
* * * * * * * *
17482016 GACTCGGCCGATCCCCGACTTACACATCCCACCCCTTTGGGCGGCTGAGCGCCTGCACGCTTGTT
778 GACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
17482081 TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
843 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17482123 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGAAT-GAGGGTTGCAACGGTACATG-TGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ATCGAGGGTTGCAGCAGCACATGCTGG
** * ** * *
17482186 AATCGAGCATGTG-TCGGTGCCATATTTTTTTTCGCCGGGGCACCATCGTCGAAGAACCTGACCG
65 GCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGAACCTGACCG
* * *
17482250 ATGGCATT-GGG-TCCGACGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGTGGGTGCT
129 ACGGCATTGGGGTTCCG-GGATCG-GGGGGTCGGGGGGTGTGCGCACATGATGTGCATGGGTGCT
*
17482313 GGTACTTGGCCCTTATA-TGG-CCCCTAT-CCTCATCAAACAT-CAGAACTCACACCCCCTTAAA
192 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAA
* *
17482374 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTT
257 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
* *
17482439 TTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAC
322 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-
* *
17482504 AAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
386 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* *
17482569 TCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGCAACT
451 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
17482634 TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCAGAAAAATGGCATTGGCACGTAG
516 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
17482699 AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTCGTCTC
581 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
17482764 TCTGGACGACGTAGTGCCCGTCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGT
646 TCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** * * * * * * *
17482829 TCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGG
711 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCCGGTAGCAAGATCGGCAGCACGCAGAGG
* * *
17482894 GGGACCCGGCCGATCCCCGGCTTATGCATCTCGCCCCTCTGGCCGGCTGAGAGCCCGCACGCTCG
776 GGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * *
17482959 TTTCATAGGTTGACGTAGGCATACGGAGTTCATTCTCAGTCTAA
841 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17483003 GCATATGGAGTTGATTCCCAATATAAGCATACGG---AGTTC-A---TTCCCAGTCTAAGCACAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGACCAGATCGAGGGTT-GCAG-C--AGCACAT
* * * * *
17483061 GCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATTG-CTGGAGAGCCT
60 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTC-GAAGAACCT
* * * *
17483125 GACCAACGGCATTGAGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATG
124 GACCGACGGCATTGGGGTTCCGG-GATCG-GGGGGTCGGGGGGTGTGCGCACATGATGTG-CATG
* * *
17483190 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTGATCAAACCTCGAGAACTCACACCCC
186 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCC
* * * * **
17483255 CTTAAAGAGCATTTGAGATTTTAAAGGTTAGCTGCCGGTAGCCAGTAAAGTGTCCGAAATGGGGA
251 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
17483320 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
316 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** *
17483385 GCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAAAAACCTTCCAAAAAAATTTA
381 GCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * * * *
17483450 AAAAAATCTCGAATCGTAAAAAATTTCAAAGATCATGAAAAAGAGAAAACGAGTCGTCTTGCCAT
445 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17483515 GAAACCTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGG
510 GAAA-CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
17483580 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATC
574 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
17483645 CCATCTCTCTGGCAG-CGTAGTGCCCGCCAGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
639 CCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
17483709 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACC-ATAGCAGGATCGGC
700 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-CCGGTAGCAAGATCGGC
* * *
17483773 AGCATGCAGAGGGGGA-CCAGCCGATCCTCGGC
764 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGC
17483805 ATGTGTCGGT
Statistics
Matches: 3048, Mismatches: 363, Indels: 131
0.86 0.10 0.04
Matches are distributed among these distances:
875 2 0.00
876 2 0.00
877 1 0.00
878 2 0.00
879 473 0.16
880 216 0.07
881 12 0.00
882 45 0.01
883 58 0.02
884 62 0.02
885 222 0.07
886 546 0.18
887 296 0.10
888 127 0.04
889 1 0.00
890 21 0.01
891 97 0.03
892 5 0.00
896 1 0.00
897 2 0.00
898 17 0.01
899 237 0.08
900 12 0.00
901 8 0.00
905 16 0.01
906 9 0.00
907 27 0.01
908 19 0.01
909 45 0.01
910 16 0.01
911 226 0.07
912 210 0.07
913 11 0.00
914 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGAACCTGACCGAC
GGCATTGGGGTTCCGGGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCG
AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTCCGGTAGCAAGATCGGCAGCACGCAGAGGGGGAC
CCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17482134 original size:26 final size:26
Alignment explanation
Indices: 17482097--17482149 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17482087 GTTGACTTAG
17482097 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17482123 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17482149 G
1 G
17482150 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17483007 original size:26 final size:26
Alignment explanation
Indices: 17482977--17483057 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
17482967 GTTGACGTAG
*
17482977 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * * *
17483003 GCATATGGAGTTGATTCCCAATATAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17483029 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17483055 GCA
1 GCA
17483058 CATGCTGGGC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17484356 original size:732 final size:708
Alignment explanation
Indices: 17483071--17485811 Score: 3397
Period size: 718 Copynumber: 3.8 Consensus size: 708
17483061 GCTGGGCTCG
* * ** * *
17483071 GGCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATTGC-T-GGAGAGCCTGACCAACGG
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCA-TGCATCGGAGAACCTGACCGACGG
*
17483134 CATTGAGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
64 CATTG-GGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
17483199 ACTTGGCCCTTATATTGGCCCCCTATCTCTGATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
128 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * * *
17483264 CATTTGAGATTTTAAAGGTTAGCTGCCGGTAGCCAGTAAAGTGTCCGAAATGGGGACACTTTTTT
193 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
17483329 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
258 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * *
17483394 AATACATGGATCACGTCTACCAAGTTTGGGGCCAAAAAACCTTCCAAAAAAATTTAAAAAAATCT
323 AATACAAGGATCACGTCTACAAAGTTTGGGGACAAAAATCCTTCCAAAAAAATTTAAAAAAATCC
* * * * *
17483459 CGAATCGTAAAAA-ATTTCAAAGATCATGAAAAAGAGAAAACGAGTCGTCTTGCCATGAAACCTT
388 CAAACCGTAAAAAGTTTTGAAA-ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA-CTT
* *
17483523 CACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
451 CACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * * *
17483588 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCATCTCT
516 AATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
*
17483653 CTGGCAGCGTAGTGCCCGCCAGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAA
581 CTGGCAGCGTAGTGCCCGCC-GCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** *
17483718 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACCATAGCAGGATCGGCAGCATGCAGA
644 GTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGG-T----T-GCAGG-TCAGCA-CATGC---
17483783 GGGGGACCAGCCGATCCTC
698 --GGG--CAG-CGA---TC
* *
17483802 GGCATGTG-TCGGTGCCACATTTTTTCTTCGTCAAGGCACCAT-CATCGGAGAACCTGACCGACG
1 GGCATGTGCT-GGTGCCGCA-TTTTTCTTCGTC-GGGCACCATGCATCGGAGAACCTGACCGACG
* * * **
17483865 GCATTAGGGTTTCGACGATCAAGGGGGCCGGGGGGTGTATGCACATGATGTGCGATGGGTGCTGG
63 GCATT-GGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
17483930 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
127 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
17483995 GTATTTGAGATTTTATAGGTTTGCTGCTAGTAGCAATTAAAGTGTCT-AGAATGGGGACACTTTT
192 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTT
*
17484059 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
256 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAC
* * *
17484124 AAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTCT-AAAAA
320 AAAAATACAAGGATCACGTCTACAAAGTTTGGGGACAAAAATCCTTCCAAAAAAATT-TAAAAAA
* * * *
17484188 ATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCAATGAAAC
384 ATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
17484253 TTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT-A
449 TTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGC
* * * * * * *
17484317 AGATATATGAAGATGGGCCTAAACCCGCCTACCACCCTATCGATCCACGACTTGCACATCCCGTT
513 AGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
17484382 TCTCTAGCCAGCGTAGT-------GCCCG---CCCGCTCGTTTCATCGGTTGGTTTAGGCATACG
578 TCTCT-GGCAGCGTAGTGCCCGCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* *
17484437 GAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGC-GGT-AGCACATGC-TG-AGC--
642 GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGGTCAGCACATGCGGGCAGCGA
17484496 TC
707 TC
* *
17484498 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATGACCAGAGAACC
1 -GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCA----T---GCAT---CGGAGAACC
* *
17484563 TGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGAT
54 TGACCGACGGCATT-GGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
17484628 GGGTGCTTGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
118 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
17484693 CCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGG
183 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
17484758 ACACATTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
248 ACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
17484822 ATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGACAAAACTCCTTTCAAAAAAATT
312 ATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGACAAAAATCCTTCCAAAAAAATT
* * * * * *
17484887 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATTAAAAATAAAAAACGATTCGTCTTGCC
377 TAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * ** * *
17484952 ATGAAACTTTACGTGAAGGCTTAGGGGACTTTTTTATGAATTTACAAGCCATTAAAATGGCATTG
442 ATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
17485017 GCATGCAGAAATATGAAGATGTGAATAAACACACCTACCACCCTATCGATCCACGGCTTGCGCAT
507 GCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
17485082 CCCGTCTCTTTGGCCAACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTA
572 CCCGTCTCTCTGG-CAGCGTAGTGCCCG-CCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
17485147 GG-AAAGTGGAGTCCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCA-G-CAGCACATGC
634 GGCATA-CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGGTCAGCACATGC
*
17485209 TGG--GC--TC
698 GGGCAGCGATC
17485216 GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCACCGGAGCATCGTCGGAGAACCT
1 G-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCAT-------GCA---TCGGAGAACCT
* * * ** *
17485281 GACCGACGGCATTGGGGTTCTGGCCATCGGGGGGGCCGAGGGGGTGTGCGTGCATGATGTGCAAT
55 GACCGACGGCATT-GGGTTCCGGCGATCGAGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGAT
** * * * *
17485346 GGGTGCTTTTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAAGTCACACCC
118 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
17485411 ACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
183 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * *
17485476 ACACTTTTTTCGAATGGCCACAAAATCTTATACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCA
248 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * ** ***
17485541 TGCCAACAAAAATACAAGGATCACGTCTACAATGTTTGGGGATAAAAATGTTTTTGAAAAAATTT
313 TGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGACAAAAATCCTTCCAAAAAAATTT
* *
17485606 CAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
378 AAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* ** *
17485671 TGAAACTTCATGTGAAGGCC-TAAGGGACCATTGTATGAATTTATGAGCCACAAAAATGGCATTG
443 TGAAACTTCACGTGAA-GCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
17485735 GCGTGTAGAAATATGAAGATGTGACTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCAT
507 GCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
17485800 CTCGTCTCTCTG
572 CCCGTCTCTCTG
17485812 ACCGACGGTA
Statistics
Matches: 1772, Mismatches: 182, Indels: 125
0.85 0.09 0.06
Matches are distributed among these distances:
696 21 0.01
697 15 0.01
698 1 0.00
700 1 0.00
701 1 0.00
702 2 0.00
704 3 0.00
705 4 0.00
706 235 0.13
707 246 0.14
708 7 0.00
711 5 0.00
712 3 0.00
713 2 0.00
714 6 0.00
715 2 0.00
716 1 0.00
717 67 0.04
718 543 0.31
719 3 0.00
720 2 0.00
721 63 0.04
725 5 0.00
730 2 0.00
731 18 0.01
732 387 0.22
733 120 0.07
734 7 0.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (708 bp):
GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATGCATCGGAGAACCTGACCGACGGCA
TTGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACAAAGTTTGGGGACAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCAA
ACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
AGCGTAGTGCCCGCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGGTCAGCACATGCGGGCAGCGATC
Found at i:17486318 original size:529 final size:530
Alignment explanation
Indices: 17485279--17486340 Score: 1637
Period size: 529 Copynumber: 2.0 Consensus size: 530
17485269 GTCGGAGAAC
***
17485279 CTGACCGACGGCATTGGGGTTCTGGCCATCGGGGGGGCCGAGGGGGTGTGCGTGCATGATGTGCA
1 CTGACCGACGGCATTGGGGTTCTGGCCATCGGGGGGGCCGAGGGGGTGTGCACACATGATGTGCA
* * * * *
17485344 ATGGGTGCTTTTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAAGTCACAC
66 ATGGGTGCTTATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* **
17485409 CCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
131 CCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCCAAAATGG
*
17485474 GGACACTTTTTTCGAATGGCCACAAAATCTTATACACTTCAAGTTTTTAGCTGATTTTTTTTGTG
196 GGACACTTTTTTCAAATGGCCACAAAATCTTATACACTTCAAGTTTTTAGCTGATTTTTTTTGTG
* * ** *
17485539 CATGCCAACAAAAATACAAGGATCACGTCTACAATGTTTGGGGATAAAAATGTTTTTGAAAAAAT
261 CATGCCAACAAAAATACAAGGATCACATCTACAATGTTTGGGGACAAAAATCCTTTCGAAAAAAT
* *
17485604 TTCAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
326 TTCAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* **
17485669 CATGAAACTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTATGAGCCACAAAAATGGCATT
391 CATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATT
* * * *
17485734 GGCGTGTAGAAATATGAAGATGTGACTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCA
456 GGCATGCAGAAATATGAAGATGTGACTAAACACACCTACCATCCTATCAATCCACGGCTTGCGCA
*
17485799 TCTCGTCTCT
521 TCCCGTCTCT
* * *
17485809 CTGACCGACGGTATTGGGGTT-TCGGCGATCGGGGGGGCCG-GGGGGTGTGCACACATGATGTGT
1 CTGACCGACGGCATTGGGGTTCT-GGCCATCGGGGGGGCCGAGGGGGTGTGCACACATGATGTGC
*
17485872 GATGGGTGCTTATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
65 AATGGGTGCTTATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
17485937 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCAGTAAAGTGTCCAAAATG
130 CCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCCAAAATG
* * *
17486002 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGT
195 GGGACACTTTTTTCAAATGGCCACAAAATCTTATACACTTCAAGTTTTTAGCTGATTTTTTTTGT
*
17486067 GCATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGACAAAACA-CCTTTCGAAAAA
260 GCATGCCAACAAAAATACAAGGATCACATCTACAATGTTTGGGGACAAAA-ATCCTTTCGAAAAA
* * *
17486131 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGGAAATCATGAAAAATAGAAAACGATTCGTCTT
324 ATTTCAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * * **
17486196 GCCATGAAACTTTACGTGAAGGCTTAGGGGACCATTTTATGAATTTACAAGCCATTAAAATGGCA
389 GCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
* *
17486261 TTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCA-CTCTATCAATCCACGGCTTGG
454 TTGGCATGCAGAAATATGAAGATGTGACTAAACACACCTACCATC-CTATCAATCCACGGCTTGC
17486325 GCATCCCGTCTCT
518 GCATCCCGTCTCT
17486338 CTG
1 CTG
17486341 GCCAACGTAG
Statistics
Matches: 481, Mismatches: 48, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
528 1 0.00
529 443 0.92
530 37 0.08
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (530 bp):
CTGACCGACGGCATTGGGGTTCTGGCCATCGGGGGGGCCGAGGGGGTGTGCACACATGATGTGCA
ATGGGTGCTTATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCCAAAATGG
GGACACTTTTTTCAAATGGCCACAAAATCTTATACACTTCAAGTTTTTAGCTGATTTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACATCTACAATGTTTGGGGACAAAAATCCTTTCGAAAAAAT
TTCAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGACTAAACACACCTACCATCCTATCAATCCACGGCTTGCGCA
TCCCGTCTCT
Found at i:17487298 original size:26 final size:25
Alignment explanation
Indices: 17487269--17487320 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
17487259 GTTGACTTAC
17487269 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTC-CAGTCTAA
17487295 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
17487320 G
1 G
17487321 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:17488915 original size:26 final size:26
Alignment explanation
Indices: 17488886--17488937 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17488876 TTGACTTAGT
*
17488886 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17488912 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17488938 ATCGGGCCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17490289 original size:719 final size:717
Alignment explanation
Indices: 17488911--17490325 Score: 2063
Period size: 719 Copynumber: 2.0 Consensus size: 717
17488901 CCTAGTCTAA
* * *
17488911 GCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCGGACTAAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACACATGCTAGG
* * * * *
17488976 CTTTGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGCTGGAGA
66 CTTCGGCATGTGCTGGAGCCGCATTTTTCTTCGCCGGGACACCATCGCCAGAGCATCGCTGGAGA
* ** *
17489041 ACCTAACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGTACATGATGTGC
131 ACCTAACAGACGGCATTGGGGTTCCGACGATCGGAGGGGCCAAGGGGTGTGCGCACATGATGTGC
* * **
17489106 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACA
196 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
17489171 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATG
* * *
17489236 GGGATAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGCTTTTTTTTGT
326 GGGACAATTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGATTTTTTTTGT
* * **
17489301 GCATGACAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAAAAAA
391 GCATGACAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * * * *
17489366 TTTTAAAATATCCCGAACCGTAAAAAGTTTTGAAAATCGCAAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCACAAAAAATAAAAAACGAGTCGACTTG
* *
17489431 CCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAAACTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTCAACGGACCATTGTATGAAACTACAAGCCATAAAAATGCCAT
*
17489496 TGGCATGCAGAAATATGAAGATGTTCCTAAACCCACTACCACCCTATCGATCCACGGCTTGCGCA
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
17489561 TCCCGTCTCTTTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
651 TCCCGTCTCTCTGGCCGACGTAATCCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
17489626 AG
716 AG
* *
17489628 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAACACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACACATGCTAGG
* * *
17489693 C-TCGAGCATGTGCTGGAGCCGTATTTTTCTTTGCCAGGG-CACCATCGCCAGAGCATTG-TCGG
66 CTTCG-GCATGTGCTGGAGCCGCATTTTTCTTCGCC-GGGACACCATCGCCAGAGCATCGCT-GG
* * * * * *
17489755 AGAACCTGATCAG-TGGCATTGGGGTTCTGGCTATCGG-GGGGCCAAGGGGTGTGCGCACTTGAT
128 AGAACCT-AACAGACGGCATTGGGGTTCCGACGATCGGAGGGGCCAAGGGGTGTGCGCACATGAT
*
17489818 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAA-T
192 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
17489882 GCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTG
257 -CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTG
* *
17489947 AAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTG-ATTTT
* * ** * **
17490012 TTTTTTGCATGCCAA-AAAGAATACAAGGATCACGTCTAACAAGTTTTTTTGGCCAAAACTTTTT
385 TTTTGTGCATGACAACAAA-AATACAAGGATCACGTCTAACAAG--TTTGGGGCCAAAAATCCTT
* **
17490076 CCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGA
447 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCACAAAAAATAAAAAACGA
* * ** *
17490141 GTCGACTTGCCATTAAACTTCACGTGAAGGCTGAACGGACCATTGTATGAATTTACAAGTCATAA
512 GTCGACTTGCCATGAAACTTCACGTGAAGGCTCAACGGACCATTGTATGAAACTACAAGCCATAA
* *
17490206 AAATTCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACGA-CCTATCGATCCAC
577 AAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCCAC
*
17490270 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATCCCCGCCCGCCCGCCCGCCCGC
641 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATCCCCGCCCGCCCGCCCGCCCGC
17490326 CTATACAGAG
Statistics
Matches: 619, Mismatches: 69, Indels: 18
0.88 0.10 0.03
Matches are distributed among these distances:
715 1 0.00
716 203 0.33
717 171 0.28
718 6 0.01
719 233 0.38
720 5 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACACATGCTAGG
CTTCGGCATGTGCTGGAGCCGCATTTTTCTTCGCCGGGACACCATCGCCAGAGCATCGCTGGAGA
ACCTAACAGACGGCATTGGGGTTCCGACGATCGGAGGGGCCAAGGGGTGTGCGCACATGATGTGC
AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATG
GGGACAATTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGATTTTTTTTGT
GCATGACAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCACAAAAAATAAAAAACGAGTCGACTTG
CCATGAAACTTCACGTGAAGGCTCAACGGACCATTGTATGAAACTACAAGCCATAAAAATGCCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAATCCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
AG
Found at i:17490527 original size:26 final size:26
Alignment explanation
Indices: 17490484--17490536 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17490474 GTTGACTTAG
* *
17490484 GCATACGGAGTTCGTTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17490510 GCATACGGAGTTTATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17490536 G
1 G
17490537 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17492133 original size:26 final size:26
Alignment explanation
Indices: 17492097--17492149 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17492087 GTTGACTTAC
17492097 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17492123 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17492149 G
1 G
17492150 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17493046 original size:26 final size:26
Alignment explanation
Indices: 17493010--17493059 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17493000 GACTTACGCG
17493010 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
17493036 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17493060 ATCGACGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:17493829 original size:803 final size:802
Alignment explanation
Indices: 17492263--17493865 Score: 2081
Period size: 803 Copynumber: 2.0 Consensus size: 802
17492253 ACCTGACCAG
*
17492263 CGGCATTAGGGTTCCAACGATCGGGGGGCCGGGGGGTGAGCGCACATGATGTGCGATGGGTGCTG
1 CGGCATTAGGGTTCCAACGATCGGGGGGCCGGGGGGTGAGCGCACAAGATGTGCGATGGGTGCTG
* * *
17492328 GTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
66 GGACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAG
*
17492393 AGCATTTGAAATTTTACAGTTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
131 AGCATTTGAAATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
* *
17492458 TCAAATGGTCACAAAATCTTGTACACATTCGAGTGTTTAGCTGAATGTTTTTGTGCAAGCCAACA
196 TCAAATAGTCACAAAATCTTGTACACATTCGAGTGTTTAGCTAAATGTTTTTGTGCAAGCCAACA
*
17492523 AAAATACAAGGATCACGTCTACCAAGTTGGGTCCAAAAATCCCTTCCGCAAAAAATTTTAAAAAA
261 AAAATACAAGGATCACGTCTACCAAGTTGGGTCCAAAAATCCCTTCCGCAAAAAATTTAAAAAAA
* * *
17492588 TCGTCGAACCATAAAAAGTTTAAAAATCATGGTAAAATAGGAAACGAGTCGTTCTGCCATGAAAC
326 TCGCCGAACCATAAAAAGTTTAAAAATCATGGAAAAATAGAAAACGAGTCGTTCTGCCATGAAAC
* *
17492653 TTCACGTGAAGGCATTAAGGGACCATTGTTTTGGAATTTACAAGAAATAAAAATGGATTGGCACG
391 TTCACGTGAAGGCATTAAGGGACCATTGTTATGGAATTTACAAGAAATAAAAATGAATTGGCACG
*
17492718 TAGAAATATGAAGATGTGCCTAAACCTCACCTACCACCCTATCGATCCACGGACTTGCGCATCCC
456 CAGAAATATGAAGATGTGCCTAAACCTCACCTACCACCCTATCGATCCACGGACTTGCGCATCCC
** * * * * *
17492783 GTCTTCCTCTGGTTGACGTAGTGGCCATCGCCCTGCCCGCCCGCTCGTTTCTTCGGTTGACTTAG
521 GTCTTCCTCTGGCCGACGTAGTGGCCACCACCCTGCCCGCCCACTCGTTCCATCGGTTGACTTAG
* ** * **
17492848 GCATACGGAGTTCATTCCCAATCTAAGATTGGATCAGATGGAGGGTTATAGCAACAGGATCGGCA
586 GCATACGGAGTTCATTCACAATCTAAGATCAGACCAGACCGAGGGTTATAGCAACAGGATCGGCA
* * * * * * *
17492913 AGATGCAGAGGGAGACCTGACCGATCCCCGACTTGCGCATCTCACCCCTCTGGTCGGTTGAGCAC
651 AGACGCAGAGGGAGACCCGACCGATCCCCGACTTACGCATCCCACCCCTATGGCCGGCTGAGCAC
* * * * *
17492978 CCGAATGCTCATTTTGTGGGTTGACTTACGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAG
716 CCGAACGCTCATTTCGTGGGTTGACATACGCATACGGAGTTCATTCCCAATCTAAGCATACGGAG
17493043 TTCATTCTCAGTCTAAGATCGA
781 TTCATTCTCAGTCTAAGATCGA
* * * * *
17493065 CGGCATTAGGGTTTCGACGATCGGGGGGGCCTGGGGGTGTGTGCACAAGATGTGCGATGGGTGCT
1 CGGCATTAGGGTTCCAACGATC-GGGGGGCCGGGGGGTGAGCGCACAAGATGTGCGATGGGTGCT
* *
17493130 GGGACTTGGCCCTTATATTGGCCCCCTATCCCTCGCCAAACCTCGAGAACTCATACCCCCTTAAA
65 GGGACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
17493195 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
130 GAGCATTTGAAATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACAC-TT
* *
17493260 TTTCAAATAGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTAAAT-TTTTTGTGCATGCCAA
194 TTTCAAATAGTCACAAAATCTTGTACACATTCGAGTGTTTAGCTAAATGTTTTTGTGCAAGCCAA
* * * * *
17493323 CCAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCGAAAAT-TCTTCTG-AAAAAATTTAAAA
259 CAAAAATACAAGGATCACGTCTACCAAG-TTGGGTCCAAAAATCCCTTCCGCAAAAAATTTAAAA
* * * *
17493385 AAATC-CCTAACCGTAAAAAGTTTTGAAAATCAT-GAAAAATAGAAAAGGAGTCGTGT-TGCCAT
323 AAATCGCCGAACCATAAAAAG-TTTAAAAATCATGGAAAAATAGAAAACGAGTCGT-TCTGCCAT
* **
17493447 GAAACTTTACGTGAAGGC-TTAAGGGACCATTG-TAT-GAATTTACAAGCCATAAAAATGCAATT
386 GAAACTTCACGTGAAGGCATTAAGGGACCATTGTTATGGAATTTACAAGAAATAAAAATG-AATT
* * *
17493509 GGCATGCAGAAAAATGTGAAGATGTGCCTAAACC-CACCTACCACCCTATCGATCCA-GGGCTTG
450 GGCACGCAG--AAATATGAAGATGTGCCTAAACCTCACCTACCACCCTATCGATCCACGGACTTG
* * *
17493572 CGCATCCCGTC-T-CTCTGGCCGGCGTAGTGCCTGCCCGCCCACCCGTCCGCCCTCCCACTCGTT
513 CGCATCCCGTCTTCCTCTGGCCGACGTAGTG---G-CC-ACCACCC-T--GCCCGCCCACTCGTT
* * * * *
17493635 CCATCGGTTGGCTTAGG-AGTATGGAGTTCATTCACAGTCTAAGATCATACCAGACCGAGGGTTG
570 CCATCGGTTGACTTAGGCA-TACGGAGTTCATTCACAATCTAAGATCAGACCAGACCGAGGGTTA
* * * ** * * * * * *
17493699 TGGCAGCAGGATC-GCTAGCACGTGGAGGGGGACCCGGCCGATCCCTGGCTTACGCATCCCGCCT
634 TAGCAACAGGATCGGCAAG-ACGCAGAGGGAGACCCGACCGATCCCCGACTTACGCATCCCACCC
** *
17493763 CTATGGCCGGCTGAGCGTCC-ACACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATTC
698 CTATGGCCGGCTGAGCACCCGA-ACGCTCATTTCGTGGGTTGACATACGCATACGGAGTTCATTC
* **
17493827 CCAATCTAAGCATACGGAGTTCTTTCTTGGTCTAAGATC
762 CCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATC
17493866 AGACCAGATC
Statistics
Matches: 690, Mismatches: 92, Indels: 37
0.84 0.11 0.05
Matches are distributed among these distances:
795 14 0.02
796 21 0.03
797 29 0.04
798 37 0.05
799 77 0.11
800 33 0.05
801 6 0.01
802 74 0.11
803 370 0.54
804 29 0.04
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (802 bp):
CGGCATTAGGGTTCCAACGATCGGGGGGCCGGGGGGTGAGCGCACAAGATGTGCGATGGGTGCTG
GGACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAAATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
TCAAATAGTCACAAAATCTTGTACACATTCGAGTGTTTAGCTAAATGTTTTTGTGCAAGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTGGGTCCAAAAATCCCTTCCGCAAAAAATTTAAAAAAA
TCGCCGAACCATAAAAAGTTTAAAAATCATGGAAAAATAGAAAACGAGTCGTTCTGCCATGAAAC
TTCACGTGAAGGCATTAAGGGACCATTGTTATGGAATTTACAAGAAATAAAAATGAATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCTCACCTACCACCCTATCGATCCACGGACTTGCGCATCCC
GTCTTCCTCTGGCCGACGTAGTGGCCACCACCCTGCCCGCCCACTCGTTCCATCGGTTGACTTAG
GCATACGGAGTTCATTCACAATCTAAGATCAGACCAGACCGAGGGTTATAGCAACAGGATCGGCA
AGACGCAGAGGGAGACCCGACCGATCCCCGACTTACGCATCCCACCCCTATGGCCGGCTGAGCAC
CCGAACGCTCATTTCGTGGGTTGACATACGCATACGGAGTTCATTCCCAATCTAAGCATACGGAG
TTCATTCTCAGTCTAAGATCGA
Found at i:17495272 original size:894 final size:896
Alignment explanation
Indices: 17493066--17496928 Score: 5111
Period size: 895 Copynumber: 4.3 Consensus size: 896
17493056 TAAGATCGAC
* * * * * *
17493066 GGCATTAGGGTTTCGACGATCGGGGGGGCC-TGGGGGTGTGTGCACAAGATGTGCGATGGGTGCT
1 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* ** *
17493130 GGGACTTGGCCCTTATATTGGCCCCCTATCCCTCGCCAAACCTCGAGAACTCATACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
17493195 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
17493260 TTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA-TTTTTTGTGCATGCCAAC
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAC
* * * * *
17493324 CAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAA-TTCTTCTGAAAAAATTTAAAAAAA
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* ** * *
17493388 TCCCTAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTCGTGTTGCCATGAAACT
326 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
17493453 TTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCAATTGGCATGCA
391 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGGCA--CA
* * *
17493517 GAAAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAGGGCTTGCGCATCCCGT
453 TAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
17493582 CTCTCTGGCCGGCGTAGTGCCTGCCCGCCCACCCGTCCGCCCTCCCACTCGTTCCATCGGTTGGC
518 CTCTCTGGCCGGCGTA--G--TGCCCG------C--CCG----CCCGCTCGTTTCGTCGGTTGGC
* * * ** *
17493647 TTAGG-AGTATGGAGTTCATTCACAGTCTAAGATCATACCAGACCGAGGGTTGTGGCAGCAGGAT
567 TTAGGCA-TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGAT
*** * * * * * *
17493711 C-GCTAGCACGTGGAGGGGGACCCGGCCGATCCCTGGCTTACGCATCCCGCCTCTATGGCCGGCT
631 CAG-TAGCACACAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * * * *
17493775 GAGCGTCCACACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAATCTAAGCAT
695 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
*** * * * *
17493840 ACGGAGTTCTTTCTTGGTCTAAGATCAGACCAGATCGAGAGTTGCGATAGCACATGCTGGGCTCA
760 ACGGAGTTCTTTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
* * * *
17493905 GGCATGTGTTGGTGCCACATTTCTCTTCGTCGGGGCACCATCGCCAGAGCATCG-CTAGAGAACC
825 GGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCAGAGCATCGTC-AGAGAACC
*
17493969 TGGCCGAT
889 TGACCGAT
** *
17493977 GGCATTGGGGTTCCGGCGATCGAAGGGGCC-A-GGGGTGTGCGCACACGATGTGCGATGGGTGCT
1 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
17494040 GGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTACA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * * *
17494105 GAGGCATTTAAGATTTTATACAGGTTTGGCTGCCCGCAGCTATTAAAGTGTCTGAAATGGTGACA
131 GA-GCATTTGAGA-TTT-TACAGGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC-
* * *
17494170 AC-TTTTTCAAATGGTCACAAAATGTTGCACTACTTCGAGTTTTTAGCTGAACTTTTTTTGTGCA
191 ACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAGTTTTTAGCT-AAATTTTTTTGTGCA
* * *
17494234 TGCCAA-AAAAATATAAGGATCACATCTACCATGTTT-GGGCCAAAACTCCTTCCGAAAAAATTT
254 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
17494297 T-AAAAAT-CCGAACCGTAAAAAG-TTCAAAAAATCATG-AAAATAGAAAAACGAGTCGTCTTGC
319 TAAAAAATCCCGAACCGTAAAAAGTTTC-AAAAATCATGAAAAATAG-AAAACGAGTCGTCTTGC
*
17494358 CATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
382 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * ** *
17494423 GGCACAAAAAAATATGAAGATGTG-CTAAACCCACCTACAATCCTATCGATCCGTGGCTTACGCA
447 GGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
17494487 TCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCTCCCGCTTGTTTCGTTGGTTGGCTTAGGCATAC
512 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
17494552 GGAATTCACTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGATAGCAGGATCAGGAGCACAC
577 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCAGTAGCACAC
* *
17494617 AGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACTGAGCGCCCGCAC
642 AGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
* * * *
17494682 GCTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATT-CTAGTCTAAGCATATGGAGTT-TGT
707 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCT-T
* * * *
17494745 TCCCAGTCTAAGATCAAATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTG
771 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * *
17494810 GTGCCACATTTTTCTTCGCC-AGGGCACCATCACCGGAGCATCGTCGGAGAACTTTACCGGT
836 GTGCCACATTTTTCTTCGCCGA-GGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCGAT
* * *
17494871 GGCATTGGGGTTCCGGTGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCAATGGGTGAT
1 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
17494936 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGATAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
17495001 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
17495066 TTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAC
* * *
17495131 AAAAATACAAGGATCATGTCTACCATGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAA
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
17495196 TCTCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
326 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * ** *
17495261 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATACAAATGCCATTGGCATGTAG
391 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAA
* * * *
17495326 AAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATACACGGCTTGCGCAACTCGTCTC
456 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * ** *
17495391 TCTGGCCGGCATATTGCCCGCCCGCGTGCTCGTTTCGTCGGATGGCTTAGGCATACGGAGTTCAT
521 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** *
17495456 TCCCAGTCTAAGATCAGACC-GAACCGAGGGTTACAATAGCAGGATCAACAGCA-AGTAGAGGGG
586 TCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGACAGCAGGATCAGTAGCACA-CAGAGGGG
* * * * ** * *
17495519 GA-TTCGGCCGATCCCCGGTTTGTGCATCCCGCCCCTCTGCCCGACTGAGCTTCCGCATGCTCGT
649 GACCT-GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCAT
*
17495583 TTCGTGGGTTGACTT-GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGT
713 TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGT
* **
17495647 CTAAGATCGGACCAGATTGAGGGTTGC-AGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
778 CTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
* * * * *
17495711 CATTTTTCCTCGTCGAGGCAACATCGCCAGAGCATCGCCAGAGAACCTGGCCGAT
842 CATTTTTCTTCGCCGAGGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCGAT
* * * * * * *
17495766 GGCATTGGGGTTCCAGTGATCGGAGGGGCCGGGGGGGTGTACGCACATGATGTACGAAGGGTGCT
1 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
17495831 GGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
17495896 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTATCTGAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
17495961 TTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTAAATTTTTTTGCGCATGCCAAC
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAC
17496026 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAA
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAA
* *
17496091 ATCCCGAACCGTAAAAA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAAC
325 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* **
17496155 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGTA
390 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
* ** *
17496220 GAAATATGAAGATGTGCCTAAACCCACCTACCACTTTATCGATCCACGGCTTGCGCATCCCATCT
455 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
17496285 CTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGTATACGGAG
520 CTCTGGCCGGCGTAGTGCCCGCCCGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** * * *
17496350 TTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGTAGGATCTGTAGCACACAGAG
581 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCAGTAGCACACAGAG
* * * * *
17496415 GGGGACAC-GGTCGATCCCCGGCTTGCGCATCCAGCCCCTCTAGCCGGCTGAGCGCCCGTACGCT
646 GGGGAC-CTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCT
* * * *
17496479 CAATTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATGCGAAGTTCATTCCC
710 CATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCC
* * * *
17496544 AGTCTAAGATCAGACCGGACCGAGGGTTGTGACATCACATGCCGGGCTCGGGCATGTGCTGGTGC
775 AGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * * *
17496609 CGCATTTTTCTTCACCGAGGCACCGTCGCCGGAGCATCGTCGGAGAACCTTACCGAC
840 CACATTTTTCTTCGCCGAGGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCGAT
* * * *
17496666 GACATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
1 GGCATTGGGGTTCCGGCGATCGGGGGGGCC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
17496731 TGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
17496796 AGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCAATAAATTGTCTGAAATGGGGACAC-T
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
17496860 TTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGTTAAATTTTTTTGTGCATGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
17496925 -AAAA
260 CAAAA
17496929 NNNNNNNNNN
Statistics
Matches: 2591, Mismatches: 315, Indels: 104
0.86 0.10 0.03
Matches are distributed among these distances:
890 18 0.01
891 46 0.02
892 84 0.03
893 16 0.01
894 289 0.11
895 1005 0.39
896 121 0.05
899 151 0.06
900 231 0.09
901 151 0.06
907 6 0.00
909 1 0.00
910 90 0.03
911 90 0.03
912 21 0.01
913 17 0.01
914 159 0.06
915 35 0.01
916 43 0.02
917 17 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
GGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAA
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCAGTAGCACACAGAGGGGGA
CCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTC
GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTA
AGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATT
TTTCTTCGCCGAGGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCGAT
Found at i:17495635 original size:26 final size:26
Alignment explanation
Indices: 17495599--17495651 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17495589 GGTTGACTTG
17495599 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17495625 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17495651 G
1 G
17495652 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17501293 original size:26 final size:26
Alignment explanation
Indices: 17501257--17501309 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17501247 CTGGTCTGAT
17501257 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17501283 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17501309 C
1 C
17501310 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17501830 original size:26 final size:26
Alignment explanation
Indices: 17501794--17501867 Score: 130
Period size: 26 Copynumber: 2.8 Consensus size: 26
17501784 GTTGGCATGC
17501794 ACTGGGAATGAACTCTGTATGCTTAG
1 ACTGGGAATGAACTCTGTATGCTTAG
*
17501820 ACTGGGAATGAACTATGTATGCTTAG
1 ACTGGGAATGAACTCTGTATGCTTAG
*
17501846 ACTGGGAATGAACTCCGTATGC
1 ACTGGGAATGAACTCTGTATGC
17501868 CTAAGTCAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (26 bp):
ACTGGGAATGAACTCTGTATGCTTAG
Found at i:17502743 original size:26 final size:26
Alignment explanation
Indices: 17502714--17502766 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17502704 CTGGTCCGAT
17502714 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17502740 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17502766 C
1 C
17502767 CATGGGTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17503541 original size:892 final size:897
Alignment explanation
Indices: 17501815--17503543 Score: 2331
Period size: 892 Copynumber: 1.9 Consensus size: 897
17501805 ACTCTGTATG
*
17501815 CTTAGACTGGGAATGAACTATGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* *
17501880 ACGAAACGAGCATACGGGCGCTCAGCCGACCAGAGGGGCGAGATGTGCAAGCCGGGGATCGTCCG
66 ACGAAACGAGCATACGGGCGCTCAGCCGACCAGA-GGGCGAGATGAGCAAGCCGAGGATCGTCCG
* * ** * *
17501945 GGTCCCCCTCTGCGTGCTGTCAATCCTACTGCCGCAACCCTTGGTTCGATCTGATCTTAGATTGG
130 AGTCCCCCTCTGCGTGCTGCCAATCCTA-TGCCGCAACCCTCAGTTCGAGCTGATCTTAGACTGG
* ** *
17502010 GAATGAACTCCGTAGGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCAAGCGGGCACTGCGTCG
194 GAATGAACTCCGCAGGCCTAAGCCAACCGACGAAACGAACGGGCGGGCAAGCGGGCACTACGTCG
* * *
17502075 GCCAGAGAGGCAGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
259 GCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTC
*
17502140 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
324 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTC
* * * *
17502205 TCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGT
389 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCTGAAACCTTTTACAGT
* * * ** *
17502270 TTAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGAACTGAACTTATTAGACGTGATCCTTGT
454 TCAGGATTTTTTAAAATTTTTTCAGAAGGAGATTTGGAACCAAACTTAGTAGACGTGATCCTTGT
* * * *
17502335 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATCGT
519 ATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
17502400 TTGAAAAAGAGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
584 TTGAAAAAGAGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
17502465 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAG
649 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAG
* * * *
17502530 TACCAGCACCCATCGCACGTCATTGTGCGCATACCCCCCGCGCCCCTCAATCGTCGGAACCCTAA
714 TACCAGCACCCATCGCACATCATTGTGCGCACACCCCCCGCGCCCCCCAATCGTCGAAACCCTAA
**
17502595 TGCCGCCGGTCAGGTTTCTCCAGCGAAGCTCCGGTGATGTGCCCCGGTGAAGAAAAATGCGAGGC
779 TGCCGCCGGTCAGGTTTCTCCAGCGAAGCTCCGGTGATGTGCCCCGACGAAGAAAAATGCGAGGC
17502660 AGCAGCAGATGCCCGGCCCAGCATGCACTCTCGTAACCCTCAGTCTGGTCCGAT
844 AGCAGCAGATGCCCGGCCCAGCATGCACTCTCGTAACCCTCAGTCTGGTCCGAT
* **
17502714 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCATGGGTCCAAC
1 CTTAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCC-TAAGT-CAAC
* * * * * * * *
17502779 CCATGAAACGATGCGTACGGGCGCTTATCGGGCCAGA-GGCGGGATGAGCAAGCCGAGGATTGGT
64 CCACGAAACGA-GCATACGGGCGCTCAGCCGACCAGAGGGCGAGATGAGCAAGCCGAGGA-TCGT
* * * *
17502843 -CGAGTCCCCTTCTGCGATG-TGCCGAT-CT-TG-TGC-ACACCTCAGTTTG-GCTGATCTTAGA
127 CCGAGTCCCCCTCTGCG-TGCTGCCAATCCTATGCCGCAAC-CCTCAGTTCGAGCTGATCTTAGA
* * *
17502901 CTGGGAATTGAGCTCCGCATGCCT-AG-CAACCGACGAAACGAAC-GGCGTGGGACAGCGGGCAG
190 CTGGGAA-TGAACTCCGCAGGCCTAAGCCAACCGACGAAACGAACGGGCG-GGCA-AGC--G--G
* * *
17502963 GCAACTACGTCGG-TAGAGAGACAGGAATGCGCAAGCCGTGGA-CGATAGGGTGGTTGGTGGTTT
248 GC-ACTACGTCGGCCAGAGAGACAGG-ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** *
17503026 TAGACACATC-TCATATTT-TGTGTGCCAATGGCATTTTTATGGCTTGTAAATTCAGGACAATGG
311 TAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA-GACAATGG
*
17503089 TCCCTTAAGCTTTCACATGAAGTTTCAT-GC-AGACGACTCGTTTTCTATTTTTCACGATTTCTG
375 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCTG
* * * * ** *
17503152 AAACCTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTCATAAGGA-ATTTGGCCCCAAAC-TGGTA
440 AAACCTTTTACAGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGATTTGGAACCAAACTTAGTA
* *
17503214 GATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAATATTCAGCGAAAAACTCGAAGTGTACAA
505 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTGTACAA
*
17503278 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA-
570 GATTTTGTGACCATTTG-AAAAAGAGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
* *
17503342 CTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
634 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGC
*
17503407 CAATATAAGGGCCAAGTACCAGCACCCATCGCGCATCA-TGTGCGCACACCCCCCG-GCCCCCCC
698 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTGTGCGCACACCCCCCGCG-CCCCCC
* * * * *
17503470 GATCGTCGAAACCCTAATGCCGTCGGTCAGG-TTCTCC-GACGATGCTTCGGTGATGGTGCCCTG
762 AATCGTCGAAACCCTAATGCCGCCGGTCAGGTTTCTCCAG-CGAAGCTCCGGTGAT-GTGCCCCG
17503533 ACGAAGAAAAA
825 ACGAAGAAAAA
17503544 AATGGCACCA
Statistics
Matches: 727, Mismatches: 82, Indels: 49
0.85 0.10 0.06
Matches are distributed among these distances:
890 1 0.00
891 20 0.03
892 166 0.23
893 122 0.17
894 27 0.04
895 35 0.05
896 79 0.11
897 38 0.05
898 40 0.06
899 95 0.13
900 65 0.09
901 19 0.03
902 20 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCATACGGGCGCTCAGCCGACCAGAGGGCGAGATGAGCAAGCCGAGGATCGTCCGA
GTCCCCCTCTGCGTGCTGCCAATCCTATGCCGCAACCCTCAGTTCGAGCTGATCTTAGACTGGGA
ATGAACTCCGCAGGCCTAAGCCAACCGACGAAACGAACGGGCGGGCAAGCGGGCACTACGTCGGC
CAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCAT
ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCAC
ATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCTGAAACCTTTTACAGTTC
AGGATTTTTTAAAATTTTTTCAGAAGGAGATTTGGAACCAAACTTAGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAGAGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATTGTGCGCACACCCCCCGCGCCCCCCAATCGTCGAAACCCTAATG
CCGCCGGTCAGGTTTCTCCAGCGAAGCTCCGGTGATGTGCCCCGACGAAGAAAAATGCGAGGCAG
CAGCAGATGCCCGGCCCAGCATGCACTCTCGTAACCCTCAGTCTGGTCCGAT
Found at i:17505647 original size:886 final size:866
Alignment explanation
Indices: 17503601--17506104 Score: 3345
Period size: 873 Copynumber: 2.9 Consensus size: 866
17503591 CGATCAAGTT
* *
17503601 TGATCTTAGACTGGGAATGAACTCTGTATGAATAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGGGC-GG-GGG
* * * * * * *
17503666 CGGCCAGCCAATACT-CCGGTCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
64 CGGGCGGGCACTA-TGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
17503730 TGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
128 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
17503795 AATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
193 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * *
17503860 TTTTAAAACTTTTTGCTGTTTGGGATTTTTTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAAACT
258 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
17503925 TGGTAGGCGTGATCCTTGTATTATTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
323 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
17503990 TACAAGATTTTGTGAGCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAG
388 TACAAGATTTTGTGACCATTT-GAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAG
17504055 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
452 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
* * * *
17504120 GGGTCAATATAAGGGCCAAGTACTAGCACCCATCGTACATCATGTGTGCATACCCCCCGGCCCCC
517 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCC
* *
17504185 CCGATCACCGGAACCCAAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCA
582 CCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-ACGA-G--CCGATGAT-GT---CCA
* * * *
17504250 GCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCATAACCCTCGGTCTG
639 GCGAAGAAAAATATGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCACAACCCTCGATCCG
* * * *
17504315 GACCGATCTTAGACTGGGAATTAACTCCCTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
704 GACCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACAGGGAATGAACGCTCTATGCCTAAG
* * *
17504380 TCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGA
769 TCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCAGAGGA
* ** *
17504445 TCGGTTGGGTCCCCCTCTACGTGCTGCCTGGTC
834 TAGACTGAGTCCCCCTCTACGTGCTGCCTGGTC
* * *
17504478 TGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGAAACGAGCGGGC--GGGCG
1 TGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGGGCGGGGGCG
* *
17504541 GGCGGGCACTACGCTGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTATGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* ** *
17504606 GTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGTCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
17504671 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
*
17504736 TGAAACTTTTTGCGGTTCCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
261 TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
17504801 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAGCTCGATGTGTAC
326 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
17504866 AAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAA
391 AAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAA
17504931 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGA
456 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG-
*
17504996 CCAATATAAGGGCCAAGTACCAGCACCCATTGTACATCATGTGCGCACACCCCCCGGCCCCCCCG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * *
17505061 ATCACCGGAACCCCAATGCCGCCGGTCAGGTT-TTC-CG-G-CGATGCT-T-CGGCGAAGAAAAA
585 ATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCACGAGCCGATGATGTCCAGCGAAGAAAAA
* * ** * *
17505120 TGTGGCACCAGCACATGTCCAAGCCCAGCAT-TGCTGTCGCAACCCTCGATCCGGTCCGATCTTA
650 TATGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCACAACCCTCGATCCGGACCGATCTTA
* * * *
17505184 GATTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACGC-CTATGCCTAAGTTAACCCACGA
715 GACTGGGAATGAACTCCCTATGCTTAGACAGGGAATGAACGCTCTATGCCTAAGTCAACCCACAA
* * *
17505248 AACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCTAG-GGATAGACTGAGT
780 AACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGC-AGAGGATAGACTGAGT
17505312 CCCCCTCTACGTGTTGCCGATCCTGTTGTTGCAACCCTCGGTTTGGTC
844 CCCCCTCTAC--G-T---G---C------TG-----C-C----TGGTC
*
17505360 TGATCTTAGACTGGGAATGAACTCCGTATG-CTGAAGCCAACCGACGAAACGAACGGGCGGGTGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGACT-AAGCCAACCGACGAAACGAGCGGGCGGG-GG
* *
17505424 ACGGGTGGGTACTATGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
64 -CGGGCGGGCACTATGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
17505489 TGCGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTAC
128 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
17505554 AATGGTCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCATGAT
193 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
17505619 TTTTGAAACTTTTTACGGTTCGAGATTTTTGAAAAATTTTTT-GGAAGG-GTTTT-GCCCCAAAC
258 TTTTGAAACTTTTTGCGGTTCGAGATTTTT-TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
17505681 TTGATACACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-CTGAAG
322 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-GAAG
*
17505745 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGA
386 TGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGA
* *
17505810 AGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGAT
450 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
*
17505875 AGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCTGG-C
515 AG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCC
* * * * * * * *
17505939 CCCCCGATCGCCGAAACTCCAATGCCGCCGGTCAGGTTCCCCAATGATTCTCCCGCGATGGTGCC
579 CCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-ACGA-----GC-CGATGATG-T
* * * * * * * * **
17506004 CCGGCCAAGAAAAATGTTGCACCAGCACAAGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGAT
636 CCAGCGAAGAAAAATATGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCACAACCCTCGAT
* * *
17506069 CTGGTCCGATCTT-GACTGGGAATGAACTCCGTATGC
701 CCGGACCGATCTTAGACTGGGAATGAACTCCCTATGC
17506105 CTAAGCCAAC
Statistics
Matches: 1447, Mismatches: 128, Indels: 83
0.87 0.08 0.05
Matches are distributed among these distances:
857 81 0.06
858 64 0.04
859 41 0.03
860 1 0.00
863 2 0.00
865 6 0.00
866 1 0.00
868 1 0.00
870 2 0.00
872 112 0.08
873 408 0.28
877 54 0.04
878 1 0.00
881 2 0.00
882 57 0.04
883 1 0.00
884 126 0.09
885 165 0.11
886 216 0.15
887 11 0.01
895 6 0.00
898 60 0.04
899 29 0.02
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (866 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGGGCGGGGGCG
GGCGGGCACTATGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGA
TCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCACGAGCCGATGATGTCCAGCGAAGAAAAAT
ATGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCACAACCCTCGATCCGGACCGATCTTAG
ACTGGGAATGAACTCCCTATGCTTAGACAGGGAATGAACGCTCTATGCCTAAGTCAACCCACAAA
ACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCAGAGGATAGACTGAGTCC
CCCTCTACGTGCTGCCTGGTC
Found at i:17507699 original size:26 final size:26
Alignment explanation
Indices: 17507670--17507719 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17507660 CCGATCCAAT
* *
17507670 CTTAGACTTGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17507696 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17507720 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17510216 original size:26 final size:26
Alignment explanation
Indices: 17510180--17510229 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17510170 CCAATCCGAT
*
17510180 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17510206 CTTATACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17510230 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17511705 original size:903 final size:898
Alignment explanation
Indices: 17509389--17513116 Score: 4939
Period size: 903 Copynumber: 4.2 Consensus size: 898
17509379 GGTGCTCAGT
* * * * * * *
17509389 CGGCCAGAGGGGCGGGATACACATA-CCGGGGATCGATCGGGTCCTCCTCTACGTGTTGCCGATC
1 CGGCCAGAGGGGCAGGATGCGCA-AGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** *
17509453 CTACTGCTGCAACCTTCGATCC-GATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCT
65 CTACTGCCGCAACCCTCGATCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
17509517 AAACGATGAAATGA----ACGGGCGGGCAGGCATTACGTCGGCCAGAGAGACGGGATACGCAAGC
129 AACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* ** * *
17509578 CGTGGATTGATAGGGTGGTAGGTCAGTTTAGGCACATCTTATATTTTTGCGTGCCAATGCTATTT
194 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTATATTTCTGCGTGCCAATGCCATTT
* *
17509643 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACATGAAGTTTCATGGCAGGACGAC
259 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGAC
* *
17509708 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA
324 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGG
* * * *
17509773 AAGGAGTTTTGGCCCCAAACTTGGTAGACAAGATCCTTGTATTTTTGTTAGCATGCACAAAACAA
389 AAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
17509838 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
454 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
17509903 CACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTT-AGAAGGGTGTGAGTT
519 CACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGGTGTGAGTT
*
17509967 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCA
583 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** * * * *
17510032 TGTGCGCATACCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGTTGGTCAGGTTCTCCGGC
648 TGTGCACACACCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * * *
17510097 AATGCTCCGGCGATGGTGCCCTGACGAAGAAAAAT-----A--TG-GCA---CC-AGCCCAGCAT
713 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAACAT
* * * *
17510150 GTGCTACCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTATACTG
778 GTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * **
17510215 GGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGT
843 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
** * * * * * * * * **
17510271 CGGTGAAAGGGGCAGAATGCGCATGCCGGGGATTGGCTGGATCTCCCTCTGCGTGCTATCGATCC
1 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** *
17510336 TGCTGCCGCAACCCTC-AGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
66 TACTGCCGCAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17510400 ACCGACGAAACGA---G-CGGGCGAGCGGGCACTACGTCGACCAGAGAGATGGGATGCGCGAGCC
130 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
17510461 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAGTGCCATTT
195 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTTCTGCGTGCCAATGCCATTT
* *
17510526 TTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGAC
259 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGAC
** *
17510591 TCGTTTTC-ATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTGG
324 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGG
* *
17510655 AAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATA
389 AAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
17510720 TTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGACAAAAGTGTCCCCATTTCAGA
454 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
17510785 CACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
519 CACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
17510850 TCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCAT
584 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* **
17510915 GTGCACACACCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAAGTTCTCCGGTG
649 GTGCACACACCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* *
17510980 ATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCGA-ATGCCCGAGCCCAGCAT
714 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGC-ACATGCCCGAGCCCAACAT
** * *
17511044 GTGCTGCCGCAACCCTCGGTTTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTG
778 GTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
** *
17511109 GGAATGAACTTTGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAAC
843 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * *
17511165 CGCCCAGAGGGGCTGGATGCACAAGCTGGGGATCGACCGGGTCCCCCGCTGCATGCTACCGATCC
1 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
17511230 TACTGCTGCATCCTTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
66 TACTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
17511295 CCGACGAAACGAGCGGGCTGGAAGGCGGGCGGGCACTACGCCGGCTAGAGAGACAAGATGTGCAA
131 CCGACGAAACGAGCGGAC--G--GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
17511360 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACCA
192 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTTCTGCGTGCCAATGCCA
* ** * *
17511425 TTTTTATGGCTTGTAAATTGATATGATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
256 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGAC
* * ** ** * *
17511490 AACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGTGGTTTGAGATTTTTTAAAAGTTTTT
321 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
17511555 TGGAAGGAATTTTGGCCCCAAACTTAGTAGACATCATCCTTGTATTTTTGTTGGCATGCACAAAA
386 TGGAAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17511620 AAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
451 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
17511685 AGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
516 AGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
17511750 TTCTCGAGGTTTGATGACGGATAGGGGGCCAATATATGGTCCAAGCACCAGCACCCATCGCACAT
581 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * * * * * * *
17511815 CTTGTGTGCACCCCCCCCAGTCCTCCCGATCGCC-AGAACCCCAATGCTGTCGGTCAGGTTCCCC
646 CATGTGCACACACCCCCCGGCCCCCCCGATCACCGA-AACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * *
17511879 GATGATGCTCAGACGATGGTGCCCCGGCAAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAA
710 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAA
* * * * *
17511944 CATGTGCTGCCGCAACCCTTGATCCGATCTGATCTTAGCCTGGGAATGAACTCCGCATGCTTAGA
775 CATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
17512009 CTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAAC
840 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * ** *** *
17512068 CGGCCAGAGGGGAAGGATGTGCCAGTTGGGGATCGGTTGGGTCCCCCTCTACGTGCTGCCGATCC
1 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** **
17512133 TACTACCACAACCCTCGATCTGGTCTGATGGTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
66 TACTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17512198 CCGAC-AAA--A-TGAACGGGCGGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCGGAAGCCG
131 CCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
17512259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTATATTTCTGCGTGCCAATGCCATTTTT
196 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTATATTTCTGCGTGCCAATGCCATTTTT
*
17512324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGATTC
261 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
17512389 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGGGATTTTTCAAAATTTTTTTGGAA
326 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAA
* * * * *
17512454 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTCTTGGTATGCACAAAAAAATT
391 GGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
17512519 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACA
456 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * **
17512584 CTTTAATTGCTACTGCCATAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
521 CTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
17512649 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
586 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--T
* * * * *
17512714 GTGCACAC-CCCCCCTGGCACCCCCGATTATCGGAAGCCCAATGCCGTCGGTCAGGTTCTCCGAC
649 GTGCACACACCCCCC-GGCCCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * ** *
17512778 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACTAGCACATGCTTGAGCCCAAAAT
713 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAACAT
* * * * *
17512843 GTGCTGCCGCGACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTA
778 GTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * **
17512908 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
843 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * **
17512964 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTTTGCGTGCTGTTGATCC
1 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
17513029 TACTACCACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAA
66 TACTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
17513094 CCCACGAAACGAGCGTG-CGGGCG
131 CCGACGAAACGAGCG-GACGGGCG
17513117 CTCAGTCGGC
Statistics
Matches: 2474, Mismatches: 332, Indels: 62
0.86 0.12 0.02
Matches are distributed among these distances:
881 1 0.00
882 563 0.23
883 94 0.04
887 1 0.00
889 1 0.00
890 1 0.00
893 2 0.00
894 606 0.24
895 84 0.03
896 314 0.13
897 5 0.00
898 1 0.00
899 3 0.00
900 9 0.00
902 167 0.07
903 622 0.25
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
TACTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTATATTTCTGCGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAA
GGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCACACACCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAACATGTG
CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
Found at i:17512029 original size:26 final size:26
Alignment explanation
Indices: 17511977--17512029 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17511967 CCGATCTGAT
* *
17511977 CTTAGCCTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
*
17512003 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
17512029 C
1 C
17512030 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:17512923 original size:26 final size:26
Alignment explanation
Indices: 17512873--17512925 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17512863 CCGGTCCGAT
* *
17512873 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTAGGAATGAATCTCGTATG
17512899 CTTAGACTAGGAATGAA-CTCTGTATG
1 CTTAGACTAGGAATGAATCTC-GTATG
17512925 C
1 C
17512926 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAATCTCGTATG
Found at i:17513188 original size:159 final size:159
Alignment explanation
Indices: 17512899--17513275 Score: 495
Period size: 159 Copynumber: 2.4 Consensus size: 159
17512889 ATTTCGTATG
* * * *
17512899 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * *
17512964 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTTTGCGTGCTGTTGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTTGCATGCTGTCGATCC
*
17513029 TACTACCACAACCCTCGGTCCAATCCGAT
131 TACTACCACAACCCTCGATCCAATCCGAT
*
17513058 CTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
17513123 CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGATCGGGTTCCCCTTTGCATGCTGTCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTTGCATGCTGTCGATCC
** * * **** *
17513188 TGTTATCGCAACCCTCGATTTGGTCTGAT
131 TACTACCACAACCCTCGATCCAATCCGAT
* ** *
17513217 CTTAGACTGGGAATGAACTCCGTATTG-CTAAGCCAACCGGCGAAACGAGCGGGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTA-TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
17513276 GGAAGGCTGG
Statistics
Matches: 189, Mismatches: 28, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
159 187 0.99
160 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTTGCATGCTGTCGATCC
TACTACCACAACCCTCGATCCAATCCGAT
Found at i:17514869 original size:26 final size:26
Alignment explanation
Indices: 17514825--17514877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17514815 CCGATCCGAT
* *
17514825 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATAAACTTCGTATG
17514851 CTTAGACTGGAAATAAACTTCGTATG
1 CTTAGACTGGAAATAAACTTCGTATG
17514877 C
1 C
17514878 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTTCGTATG
Found at i:17515765 original size:26 final size:26
Alignment explanation
Indices: 17515729--17515779 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17515719 CAATCCGATC
*
17515729 TTAGACTGGGAATGAACTCTGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
17515755 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
17515780 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:17516648 original size:26 final size:26
Alignment explanation
Indices: 17516612--17516664 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17516602 CTGGTCCGAT
17516612 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17516638 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17516664 C
1 C
17516665 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17517460 original size:894 final size:892
Alignment explanation
Indices: 17513058--17518488 Score: 6997
Period size: 892 Copynumber: 6.1 Consensus size: 892
17513048 CCAATCCGAT
* *
17513058 CTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * * * *
17513123 CGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGATCGGGTTCCCCTTTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** *
17513188 TGTTATCGCAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATTG-CTAAGCCA
131 TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA-TGCCTAAGCCA
* * * *
17513252 ACCGGCGAAACGAGCGGGCGGGCGGGAAGGCTGGCGGGCACTGCGTCATCCAGAGAGACGGGATG
195 ACCGACGAAACGAGCGGGCGGGCGGGCA--CT-AC--GC-C-G-G----CCAAAGAGACGGGATG
* * *
17513317 CGCAAGCCATGAATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCA
248 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ATTGCCA
*
17513381 ATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
311 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* **
17513446 CAAGACGACTTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTT-AA
376 CAAGACGAC-TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAA
* * * * * *
17513510 CATTTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTATATGTGATCCTTGTTTTTTTGTTGACG
440 -A-TTTTTTCGGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCA
** * * *
17513575 TGCGTAAAAAAATTCAGATAAAAACTCGAAGTGCACAAGATTTTGTCACCATTTGAAAAAAGTGT
501 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
17513640 CCCCATTTTAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
566 CCCCATTTCAGACACTTTAATGGCTACTGCC-GCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
17513705 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCC
630 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * ** * *
17513770 ATCGCACATCATGGGCGCACACCCCCCCAATGCCCCCGATCGTCGGAACCCCAATACCGCCGGTC
695 ATCGCACATCATGTGCGCACACCCCCCCGACACCCCCGATCGTCGGAACCCCAATGCCGTCGGTC
* * * * * *
17513835 AGGTTCTCCGACGATGCTTCGGTGATGGTGCCTCAACGAAGAAAAATACGGCACCAGCACATGCT
760 AGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCC
17513900 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGT
825 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
*
17513964 GTG
890 ATG
* *
17513967 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * *
17514032 CGGCCAGAGGGGCGGGATGCGCAAGTTGGGGATCGGCCAGGTTCCCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
17514097 TGCTGCCACAACTCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
17514162 CTGACGAAACGAGCGGGCGAGCGGGCACTACGGCGGCCAGAGAGACGGGATGCGCAAGCTTTGGA
196 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGA
** * * * * *
17514227 TTAATAGGATGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCAATTTTCATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-TTGCCAATGCCATTTTTATG
** * *
17514292 GCTTGCGAATCCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
17514357 TTCTATTTTTCATAATTTTTGGAACTTTTTGCGGTTCGGGATTTTTTCAAATTTTTTCAGAAGGA
390 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAAATTTTTTCGGAAGGA
* * *
17514422 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTGGGCATACACAAAAAAATTCAG
455 GTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAG
* *
17514487 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTT
518 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
17514552 TAATGGCTACTGGCAC-CAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCAA
583 TAATGGCTACT-GC-CGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
17514616 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCTCACATCATGTGC
646 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
17514681 GCACA-CCCCCTGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGG---T-------T-
711 GCACACCCCCCCGACACCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
** * ** * *
17514734 CTCCGGCGATGGTGCCTTGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTAC
776 CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
17514799 TGTCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATG
841 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17514851 CTTAGACTGGAAATAAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTC-GA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * * ** *
17514915 TCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATCGGTCGGGTCCCCTTCTGTGTGCTACCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATC
* * * * * *
17514980 CTGTTGCCGTAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGAATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17515045 ACTGACGAAACGAGCGAGAGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCA
195 ACCGACG-AA--A-C--GA--GCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCA
*
17515110 AGCCCTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAT-TGCCAATGCC
17515175 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
17515240 CGGCCCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
381 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAAATTTTT
* * * *
17515305 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCTTGGATAAA
446 TCGGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAA
*
17515370 ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
509 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17515435 CAGACACTTTAATGGCTACTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGA
574 CAGACACTTTAATGGCTACTGC-CGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
17515500 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
638 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
17515565 TCATATGCGCACA-CCCCCCGGCCCCCCCAATCGTCGAAACCCCAATGCCGTCGGTCAGGCTCTC
703 TCATGTGCGCACACCCCCCCGACACCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * ** *
17515629 CTGCGAGGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGTGCCCA
768 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
** * ** *
17515694 GCATGTGCTGCTACAACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCTGTATG
833 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* **
17515754 ATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAATCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17515819 CGGCCAGAGGAG-GGGATGCGCAAGCCAGGGATCGACTGGGTCCCCTTTTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** * *
17515883 TGTTGCCGCAACCCTC---C-AATCTGATCTTAGACTGGGAATCAACTCCGTATGGCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
17515944 CCGACG--AC-A-CAAGCGGGTGGGCACTACGTCGACCAAAGAGACGGTATGCGCAAGCCGTGGA
196 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGA
* *
17516005 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-TTGCCAATGCCATTTTTATG
*
17516070 GCTTGTAAATTCATGCAATGGTACCC-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
325 GCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
17516134 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTT-GGAAGG
389 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAAATTTTTTCGGAAGG
* * *
17516198 ATTTTTGGCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTT-GCATGCACAAAAAAATTCAGC
454 AGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGC
* * * *
17516262 TAAGAACTCAAAGTGTACAAGA-TTTGTGATCATTTGAAAAAAGTGTTCCGC-TTTCAGACACTT
519 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-TCCCCATTTCAGACACTT
* *
17516325 TAATGGGCTACTGCCAGGCAAACTTGTAAAAATCTCAAATGCTCTTTAA-GAGGTGTGAGTTCTC
583 TAAT-GGCTACTGCC--GCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
17516389 GAGGTTTGGATGAGGGA-ATTGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
644 GAGGTTT-GATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*** * * * * *
17516453 GTGCGCA-TGGCCCCCGACACCCCCGATCATCGGAACCCCAATGCCGTCAGTTAGGTTCTTCGAC
707 GTGCGCACACCCCCCCGACACCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
*
17516517 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCAT
772 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* *
17516582 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
837 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17516638 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTACGGGCTCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
17516703 CGACCAGAGGGGCGAGATGCGCAAGTCGGGGATTGGCCGGGTCCCCCTCTACGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * ** * ** * *
17516768 TGCTGCTGCAACCCTCGGTTTGGTCCAATCTTAGACTAGGAACCAACTCCGTATGCATATGCCAA
131 TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17516833 CCGACGAAACGA-CAGGGTGGGCGGGTACTACGCCGGCCAAAGAGACGAGATGCACAAGTCGTGG
196 CCGACGAAACGAGC-GGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGG
* *
17516897 ATCGATAGGGTGTTAGGTGGGTTTAGGGACATCTTCATATTTCTATTGCCAATGCCATTTTTATG
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATTGCCAATGCCATTTTTATG
* * * **
17516962 GCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGATGACTCAAT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** * *
17517027 TTCTATTTTTC-TCGATTTTCAAAACGTTTTACGGTTTGGGATTTTTT-AAATTTTTTCGGAAGG
390 TTCTATTTTTCAT-GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAAATTTTTTCGGAAGG
* * * *
17517090 AGTTTT-CACCCAAACTTAGTAGACATGATCCTTGTATTTTTTCTGGCATGTACAAAAAAATTTA
454 AGTTTTGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TGGCATGCACAAAAAAATTCA
* * *
17517154 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGACACT
517 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
17517219 TTAATGGCTACTGACCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
582 TTAATGGCTACTG-CCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
17517284 -ATTATGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGTG
646 GGTT-TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
17517348 CGCACACCCCCCCAGAAACCCCCGATCGTCAGAACCTCAATGCCGTCGGTTAGGTTCTTCGGTGA
710 CGCACACCCCCCC-GACACCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* * ** * **
17517413 TGCTCCGGTGATGGTG-CCCTAGCGAAGAAAAATACGGCAGTAGCACATGTCCGAGCCCAATATG
774 TGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
17517477 TGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCCTATG
838 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
17517532 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
17517597 CGGTCGGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTATGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
* * ** * * * * **
17517662 TACGGTTGCAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17517727 CCGACGAAACGAGCGGGCGGGCGGACGGGCCCTACGCCGGCCAGAA-AGACGGGATGCGCAAGTC
196 CCGACGAAACGAGCGGGC--G-GG-CGGGCACTACGCCGGCCA-AAGAGACGGGATGCGCAAGCC
* ***
17517791 GTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAGCACCATTT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAT-TGCCAATGCCATTT
17517856 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
320 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
17517921 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTCAAATTTTTTCAG
385 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAAATTTTTTCGG
* * * *
17517986 AGGGAGTTTTGGCCCCAAACTTGTTAGACGTGATCCTTATATTTTTGTTGGCATGCATAAAAAAA
450 AAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAA
17518051 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
513 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
**
17518116 CACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
578 CACTTTAATGGCTACT-GCCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
17518181 TCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCAT
642 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
17518246 GTGCGCACACCCCCCCCCCGACGCCCCCGATCGCCGAAACCCAAATGCCGTCGGTCAGGTTCTCC
707 GTGCGCACA---CCCCCCCGACACCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * ** * *
17518311 GGCGATGCTTCGACGATGGTACCCCGACGAAGAAAATTGTGGCACTAGCACATGCCTGAGCCCAG
769 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * * * * * *
17518376 CATGTGCTGCCCCAACCCTCGGTCCAGTCTGATCTTAGATTGCGAGTAAACTCTGTATG
834 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
17518435 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
17518489 ATCCCGAGGA
Statistics
Matches: 3968, Mismatches: 471, Indels: 172
0.86 0.10 0.04
Matches are distributed among these distances:
881 38 0.01
882 50 0.01
883 106 0.03
884 529 0.13
885 69 0.02
886 217 0.05
887 4 0.00
888 1 0.00
889 42 0.01
890 2 0.00
891 18 0.00
892 740 0.19
893 124 0.03
894 421 0.11
895 291 0.07
896 50 0.01
897 143 0.04
898 124 0.03
899 119 0.03
900 20 0.01
901 232 0.06
902 63 0.02
903 353 0.09
904 13 0.00
906 1 0.00
907 2 0.00
908 2 0.00
909 194 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAAATTTTTTCGGAAGGAG
TTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGCCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGACACCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG
GCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17517542 original size:26 final size:26
Alignment explanation
Indices: 17517506--17517558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17517496 CCGGTCCGAT
*
17517506 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGAATGGGAATGAACTCCCTATG
*
17517532 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCCTATG
17517558 C
1 C
17517559 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCCTATG
Found at i:17519636 original size:26 final size:26
Alignment explanation
Indices: 17519585--17519637 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17519575 CCAATCCGAT
* * **
17519585 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17519611 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17519637 C
1 C
17519638 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17520498 original size:26 final size:26
Alignment explanation
Indices: 17520469--17520521 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17520459 CCGGTCCGAT
*
17520469 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
17520495 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
17520521 C
1 C
17520522 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:17523164 original size:26 final size:26
Alignment explanation
Indices: 17523135--17523187 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17523125 CTGGTCCGAT
17523135 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
17523161 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17523187 C
1 C
17523188 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:17523623 original size:898 final size:899
Alignment explanation
Indices: 17518705--17525710 Score: 8785
Period size: 898 Copynumber: 7.8 Consensus size: 899
17518695 CCGATCTGAT
* *
17518705 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC-AGAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTACGGGCGCTCAG
* * * * * * * * *
17518769 TCGGCCAAAGGGGCGGGAAGCACAAGCCGGGGATCGGCCAGGTCCCCCTCTGCCT-CTTGCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGC-TGTCGAT
* * ** * * * *
17518833 TCTGCTACCGCAACCCTTAGTCCGATCTGATCTTAGACTGGGAATTAACTCCGTATGCCTCAGCC
129 CCTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * ** *
17518898 AACCGATGAAACGAACGGGCGGGCAGACGGGCGGTCTCTACGTTGGCCAAAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGAGC-GG--G-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
**
17518963 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
17519028 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * *
17519093 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC-TTTTACAGTTCGGGATTTGTTAAAATTTT
385 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
17519157 TTCGAAAGGATTTTTGGCTCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAA
450 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACA
* * *
17519222 AAAAAATGCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCAT
514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
17519287 TTCAGACACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTCAGGGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
17519352 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCG
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*
17519417 CATCATGTGCGCACACCCCCCACGGCCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
709 CATCATGTGCGCACACCCCCC-CGG--CCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGT
* * * **
17519482 TCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCTAGAG
771 TCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
* * * * ** * * *
17519547 CCCAGTATGTGCTGCCGTAACCCTTGGA-CCAATCCGATCTTAGATTGGGAATGAACTCTGTATG
836 CCCAGCATGTGCTGCTGCAACCC-TCGATCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATG
* * * * *
17519611 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * * * *
17519676 CGGCCAGAGGGGCGAGACGCGTAAGCTGGGGATTGACCAGGTCCTCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCC
* * * *
17519741 TGCTACCACAACCCTC-GACTGGGTCCGATCTTAGACTAGGAATGAACCCCGTATGCCTAAGCCA
131 TGCTACCACAACCCTCGGTC-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17519805 ACCGATG-AA--A-CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGACACAGGATGCACAAGCC
195 ACCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* **
17519866 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGAAAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
** *
17519931 TCGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ***
17519996 TCGTTTTCTATTTTTCATGACTTTTGAAACTTTTTACGATTCAAAATTTTTTAAAATTTTTTC-A
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* *
17520060 GAAGGAGTTTTGGCCCCAAACCTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 -AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * ** * * *
17520125 TTTCAGCTAAAAACTCGAAGTATATGAGATTTTGGGACCATTTAAAAAAAGTGTTCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
17520190 ACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTTACTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
17520255 TTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-TACCAGCACCCATCGCACGTCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
17520319 TGTGCGCACACCCCCCCTGCCCCCTCGATCGTCGGAACCCCAATG-C--C-GTCA-G-TCT--G-
714 TGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGA
* * * ** * * *
17520375 -G-TTCTCCGACGATGGTGCCTCGACGAAGAAAAATACGGCACCAGCACATGCTCAAGCCCAACA
778 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
17520438 TGTGCT-ATCCCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGCATG
843 TGTGCTGCT-GCAACCCTCGATCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATG
* * * * *
17520495 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCACGATACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * ** *
17520560 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACAGGGTCCCACTCT-CTGTGCTACCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTAC-ATGCTGTCGATC
* * * * * * *
17520624 CTGCTGCCCCAACCCTCGGTTCGGTCCAATCTTAGAATGGGAAAGAACTCCATATGCCTAAGCCA
130 CTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17520689 ACCGACGAAACGAGCGGGTGGGCGGGCGAGCAGGCACTACGCCGGCCAAAGAGACGAGATGCGCA
195 ACCGACGAAACGAGCGAGCGGGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
17520754 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTGCATGCCAATGC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGC
*
17520819 CATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** *
17520884 ACGACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTT
385 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
*
17520948 TTC-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATA
450 TTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
* * *
17521012 AAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGGTTTTGTGACAATTTGAAAAAAGTGTCCCCAT
514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
17521077 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * *
17521142 GAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCTAAGTACAAGCAACCATCGCA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
17521207 CATCATGTGCGCACACCCCCCGGGCCCCCCGATCATCGAAACCCCAATGTCGTCGGTCAAGTTCT
709 CATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCT
* * ** * *
17521272 CCGATGATGCTCCGACGATGGTGCCCTAACGAAGAAAAATGTGGTACCAGCACATGCCTGAGCCC
774 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
*
17521337 AGCATGTGCTGCTGTAA-CC-C--T-C-G---G-TC-T-GA-T---------CT--G-AT-
839 AGCATGTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATG
* *
17521372 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * *
17521437 C-GCCTAGAGTGGTGGGATGCGCAAGCCGGTGATCGGCTGGGTCCCCCTCTACGTGCTATTGATC
66 CGGCC-AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATC
* ** * * * * * * ** * * *
17521501 TTGCTGTCGCAA-GCTTGGTCTGGTTCAATCTTAGGTTGGGAATAAACTCCATATGCCTAGGCCA
130 CTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
17521565 ACTGACG-AA--A-TGA------------GCACTACGCCGGCCAGAGAGACGGGATACGTAAGCT
195 ACCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* ** * *
17521614 ATAAATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
17521679 TTATGACTTTTAAATTCATACAATGGCCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
17521744 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTC-GGATTCTTTAAAATTTTTTCG
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG-TTCGGGATTTTTTAAAATTTTTTCG
* * *
17521808 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTTTGGCATGCACAAAAAA
454 AAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
17521872 ATTTAACTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTG-AAAAAGTGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
17521936 ACAATTTATTGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
17522001 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
17522066 TGTGCGCACACCCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGTCGTCGGTAAGGTTCTCCG
714 TGTGCGCACA-CCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCG
* * * ** * *
17522131 ACGATGCTTCGGCGACGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCGGC
777 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* * * * * * *
17522196 ATGTGATGTCACGCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGCATG
842 ATGTGCTG---C-TGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATG
* **
17522258 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAATGGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * ** *
17522323 CGGCTAGAGGGGCTGGATGCGCAAGCCGGGGATCGACCGTGTCCCCCTCTATGTGCT-ACAGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTC-GATC
** ** * *
17522387 CTGCTGTCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17522452 ACAGACGAAACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCTGGCTAGAGAGACGGGATGCGCA
195 ACCGACGAAACGA----GCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
** **
17522517 AGCCGTGGATCGATAAAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
** *
17522582 ATTTTTATGGCTTGTAAATTCATACAATGGTCCAATAAGCCTTCACGTGAAGTTTCATGGCGAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
17522647 TGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTTAAAATTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTT
* ** *
17522712 CT-G-AAGGAGTTTTGGGACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
450 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
*
17522775 AAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
17522840 TCAGACACTTTAATGGCTACTGGTAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
17522905 AGTTCTCGAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCTTCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
17522970 ATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGTCATCGGCCAGGTTCT
710 ATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCT
* * * *
17523035 CCGGCGATGCTCTGGTGATGTTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
774 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
*
17523100 AGCATGTGCTGCTGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAAAGAACTCCGTATG
839 AGCATGTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATG
* * **
17523161 CTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGAAGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
17523226 CGCCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTCTACATGTTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCC
* * **
17523291 TACTATCACAACCCTCGGTTTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17523355 CCGACGAAACGAGCAAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGAGTTGCGCAAGCCG
196 CCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
17523420 TGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
17523485 TATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
*
17523550 CGTTTTCTA-TTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
** *
17523614 ACTAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
17523679 TCAGCTAAAAACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
17523744 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTATGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
17523809 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCATCACCCATTGAACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * *
17523874 TGTGCACACCCCCCCGGCTCCCCCGATCACCGGAACCTCAAT-TCCGTCGGTAAGGTTCTCCGAC
716 TGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGT-CGTCGGTCAGGTTCTCCGAC
* ** * *
17523938 GATGCTCCGGTGATGGTGCCTTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
779 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
** * * * *
17524003 GTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAACA-CACTCCATATG
844 GTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAA-AGAACTCCGTATG
* * *
17524059 CTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * ** *
17524124 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCATGCTACCGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCC
* * * * *
17524189 TGCTATCATAACCCTCGGTCCGATCTGATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAA
131 TGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
17524254 CCAACGAAAC-A---AGCGGGCAGGCGGACACTACGCCGACCAGAAAGACGGGATGCGTAAGTCG
196 CCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
17524315 TGGATCGATAGGATGGTAGGTGGGTTTA-GCACATCTTCATATTTTTTCGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* **
17524379 TATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACAAGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
17524444 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTC-GGATTTTTTAAAATTTTTTCGGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
* * * * *
17524508 AGAAGTTTTGGCCCCAAACATGGTAGATATGATCCTTGTATTTTTTTTGGCATGCA-TAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
17524572 TCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
17524637 ACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
17524702 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
17524767 TGCGCACA-CCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCATTGGCCTGGTTCTCCGACG
716 TGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACG
* * *
17524831 ATGCTCTGGCGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATG
780 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *** **
17524896 TGCTG-TCGCAACCCTCGATCTGGTCTGATATTAGACCAAGAAAGAACTATGTATG
845 TGCTGCT-GCAACCCTCGATCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATG
*
17524951 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * * *
17525016 CAGCCATAGAGGCGGGATGCGTAAGCCAGGGATC-AGCCGGTTCCCCCTCCACGTGCTGGCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTACATGCTGTCGATC
* * *
17525080 CTGCTGCCACAA-CC-C---AC-GT--G--C-T-G---GCGAATGAACTCCGTACT-CCTAAGCC
130 CTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA-TGCCTAAGCC
* * *
17525129 AACCGATGGAACGAGCGGGCGGGCGGGCAGACGGGCGGCAGGCACTACG-CGGCCAGAGAGACGG
194 AACCGA-CGAA--A-CGAGCGAGC-GG--G-CGGGC-G--GGCACTACGCCGGCCAGAGAGACGG
* * *
17525193 GATGCGCAAGTCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCACATTTTTCTGCA
248 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT--CATATTTCTGCA
*** *
17525258 TTTGAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTT
311 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * *
17525323 CATGGCAAGATGACTCTTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGA-TTTT
376 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * *
17525387 TAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGGTTGG
441 TAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
* *
17525452 CATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGT
506 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
17525517 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA
571 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* ** *
17525582 GGGGGTATGAGTTCTCGAGGTTTGGCGAGGGATAGGGGGCCAATATAAGGGCCAAGTCCCAGCAT
636 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-
* * * * * *
17525647 CCCATCGCACATCTTGTGCACACA-CCCCCAGGCCCCCCCGATCGTCGAAACCCTAATGCCGTCG
700 CCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGTCGTCG
17525711 ATCTTAGACT
Statistics
Matches: 5319, Mismatches: 648, Indels: 276
0.85 0.10 0.04
Matches are distributed among these distances:
854 146 0.03
855 199 0.04
856 212 0.04
859 1 0.00
860 3 0.00
861 2 0.00
862 1 0.00
864 1 0.00
865 1 0.00
866 1 0.00
869 1 0.00
870 2 0.00
871 1 0.00
872 3 0.00
873 2 0.00
875 2 0.00
876 51 0.01
877 143 0.03
878 7 0.00
879 1 0.00
880 2 0.00
881 4 0.00
882 3 0.00
883 3 0.00
884 265 0.05
885 8 0.00
886 122 0.02
887 55 0.01
888 14 0.00
889 7 0.00
890 6 0.00
891 64 0.01
892 588 0.11
893 367 0.07
894 368 0.07
895 295 0.06
896 73 0.01
897 74 0.01
898 1067 0.20
899 117 0.02
900 1 0.00
901 3 0.00
902 45 0.01
903 244 0.05
904 3 0.00
905 4 0.00
906 212 0.04
907 360 0.07
908 165 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCC
TGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGA
TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATG
Found at i:17525742 original size:26 final size:26
Alignment explanation
Indices: 17525713--17525762 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17525703 TGCCGTCGAT
17525713 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17525739 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTA
17525763 CGCGTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17526162 original size:21 final size:21
Alignment explanation
Indices: 17526123--17526162 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
17526113 TCATGGCAAG
* *
17526123 AAGATTTTTTTTTCATTTTTC
1 AAGATTTTTTATCCATTTTTC
17526144 AAGATTTTTTATCC-TTTTT
1 AAGATTTTTTATCCATTTTT
17526163 ACGGTTTGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.10, G:0.05, T:0.65
Consensus pattern (21 bp):
AAGATTTTTTATCCATTTTTC
Found at i:17526649 original size:26 final size:26
Alignment explanation
Indices: 17526611--17526663 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17526601 CTGGTCTGAT
17526611 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTTCATATG
* *
17526637 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCATATG
17526663 C
1 C
17526664 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCATATG
Found at i:17528254 original size:26 final size:26
Alignment explanation
Indices: 17528225--17528277 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17528215 CCGGTCCAAT
17528225 CTTAAACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
* *
17528251 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
17528277 C
1 C
17528278 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:17529852 original size:26 final size:26
Alignment explanation
Indices: 17529823--17529874 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17529813 CCGGTCCGAT
*
17529823 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17529849 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17529875 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17530645 original size:26 final size:26
Alignment explanation
Indices: 17530616--17530686 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
17530606 GCTAGAAACG
*
17530616 GGGAATGAACTCCGTATGCTTATACT
1 GGGAATGAACTCCGTATGCTTAGACT
* *
17530642 GGGAATCAACTCCATATGCTTAGACT
1 GGGAATGAACTCCGTATGCTTAGACT
*
17530668 GAG-ATGAAACTCCGTATGC
1 GGGAATG-AACTCCGTATGC
17530687 CTACGTCAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 2 0.05
26 36 0.95
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
GGGAATGAACTCCGTATGCTTAGACT
Found at i:17531129 original size:804 final size:816
Alignment explanation
Indices: 17529552--17531184 Score: 2146
Period size: 804 Copynumber: 2.0 Consensus size: 816
17529542 TGGCTACTGG
* * *
17529552 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
1 CAGCTAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATCAGAGA
*
17529617 TAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
66 TAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGC
* * * *
17529682 CCCTCCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCAGCGATGCTCCGACGATGGTGT
131 CCCTCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGCTCTCCA-CGATG--CCGAC-ATGGTGC
* * * * * ** *
17529747 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCTAGCATGTGCTGTCGCAACCCTTAG
192 CCCGACGAAGAAAAATGCAGCACCAACACATGCCCAAGCCCAGCATGTGC-GTAGAAACCCGGAA
*** * * *
17529812 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTATGAC
256 TCAACTCCGATCTTAGACTGGGAATCAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGAC
* *
17529877 TAAGTCAACCCATGAAACGAGCGTACGAGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCG
321 TAAGTCAACCCATGAAACGAGCGTACGAGCGCTCAACCGGCCAGAGGGGCGAGATGCACAAGCCG
* * * *
17529942 AGGATCGATCGGGTCCCCATCTGCATCTTGTCGATCCTACTGTCGGAACCCACCATCCGATTCGA
386 AGGATCGACCGGGTCCCCATCTGCATCTTGTCGATCCTACTGTCGCAACCCACCATCCGATCCAA
* * *
17530007 TCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGGGG
451 TCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGACGGGCGG
* *
17530072 GCGGCCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGG
515 ACGGCCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
17530137 TTTAGGAACATCTTCATATTTCTATGTGCCAATGCCATTTTTATTTCCTTTAAATTCATACAATG
580 TTTAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTACTGCATTTAAATTCATACAATG
* * *
17530202 GTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
645 GTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
** * *
17530267 GAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGATTTTTAGCCCCAAACTTGGT
710 GAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGA
* **
17530332 AGACGTAATCCTTGTATTTTTTTTGGCTTGCACAAAAACATT
775 AGACGTAATCCTTGTATTTTTGTTGGAATGCACAAAAACATT
* *
17530374 CAGCTAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATCAGAGA
1 CAGCTAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATCAGAGA
*
17530439 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGC
66 TAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGC
* *
17530504 CCC-CTCGATCGCCGGAACCTCAATGCCGTTGGTCAGGCTCT-C-C-A-G-C-A-ATGGTGCCCC
131 CCCTC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGCTCTCCACGATGCCGACATGGTGCCCC
** * * ** *
17530561 GGTGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATTTGC-TAGAAACGGGGAATGAA
195 GACGAAGAAAAATGCAGCACCAACACATGCCCAAGCCCAGCATGTGCGTAGAAACCCGGAATCAA
* *
17530625 CTCCGTATGCTTATACTGGGAATCAACTCCATATGCTTAGACT--GAGATGAAACTCCGTATGCC
260 CTCCG-AT-CTTAGACTGGGAATCAACTCCATATGCTTAGACTAGGA-ATG-AACTCCGTATGAC
* * * * * * *
17530688 TACGTCAACCTATGAAACGAGCGTGCGGGCTCTCAGCCGGCCAGAGGGGCGAGATGCATAAGCCG
321 TAAGTCAACCCATGAAACGAGCGTACGAGCGCTCAACCGGCCAGAGGGGCGAGATGCACAAGCCG
* * * * * * *
17530753 GGGATCGGCCGGGGTCCCCCTTTGCGTGC-TG-CTGATCCTGCTG-CTGCAACCC-TCAGTCCG-
386 AGGATCGACC-GGGTCCCCATCTGCAT-CTTGTC-GATCCTACTGTC-GCAACCCACCA-TCCGA
*
17530813 TCCAATCTTAGACTAGGAATGAAC-TCTGTATGCCTAAGCCAACTGACGAAACGAGC-G-GG-CG
446 TCCAATCTTAGACTAGGAATGAACTTC-GTATGCCTAAGCCAACCGACGAAACGAGCGGCGGACG
* *
17530874 GGCGGACGGGCACTACGTC-GTCCAGAGAGAC-GGATGCGTAAGCCGTGGATCGATAGGGT-GTA
510 GGCGGACGGCCACTACGTCAG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
17530936 GGT-GGTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTT-CTGGATTGTAAATTCA
574 GGTGGGTTTAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTACTGCATT-TAAATTCA
17530999 TACAATGGTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCAT
638 TACAATGGTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* ** *
17531064 GATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
703 GATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTAGCCCCAA
*
17531129 ACTTGGAAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAACATT
768 ACTTGGAAGACGTAATCCTTGTATTTTTGTTGGAATGCACAAAAACATT
17531178 CAGCTAA
1 CAGCTAA
17531185 AAACTAGAAG
Statistics
Matches: 712, Mismatches: 86, Indels: 44
0.85 0.10 0.05
Matches are distributed among these distances:
803 3 0.00
804 220 0.31
805 5 0.01
806 28 0.04
807 28 0.04
808 2 0.00
809 14 0.02
810 7 0.01
811 206 0.29
812 34 0.05
813 2 0.00
814 1 0.00
817 1 0.00
818 1 0.00
819 1 0.00
821 2 0.00
822 157 0.22
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (816 bp):
CAGCTAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATCAGAGA
TAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGC
CCCTCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGCTCTCCACGATGCCGACATGGTGCCCCG
ACGAAGAAAAATGCAGCACCAACACATGCCCAAGCCCAGCATGTGCGTAGAAACCCGGAATCAAC
TCCGATCTTAGACTGGGAATCAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGACTAAGT
CAACCCATGAAACGAGCGTACGAGCGCTCAACCGGCCAGAGGGGCGAGATGCACAAGCCGAGGAT
CGACCGGGTCCCCATCTGCATCTTGTCGATCCTACTGTCGCAACCCACCATCCGATCCAATCTTA
GACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGACGGGCGGACGGCC
ACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
AACATCTTCATATTTCTACGTGCCAATGCCATTTTTACTGCATTTAAATTCATACAATGGTCCCT
TAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
TTTTACAGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGAAGACGT
AATCCTTGTATTTTTGTTGGAATGCACAAAAACATT
Found at i:17531558 original size:26 final size:26
Alignment explanation
Indices: 17531520--17531572 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17531510 CTGGTCTGAT
17531520 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17531546 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17531572 C
1 C
17531573 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17532437 original size:26 final size:26
Alignment explanation
Indices: 17532408--17532460 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17532398 CTGGTCCGAT
* *
17532408 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACGCCGTATG
*
17532434 CTTAGACGGGGAATGAAGGCCGTATG
1 CTTAGACGGGGAATGAACGCCGTATG
17532460 C
1 C
17532461 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACGCCGTATG
Found at i:17532871 original size:888 final size:888
Alignment explanation
Indices: 17530374--17534233 Score: 5070
Period size: 888 Copynumber: 4.3 Consensus size: 888
17530364 CAAAAACATT
* * *
17530374 CAGCTAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATCAGAGA
1 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
17530439 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGC
66 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * * **
17530504 CCCCTCGATCGCCGGAACCTCAATGCCGTTGGTCAGGCTC-TCCAGCAATGGTGCCCCGGTGAAG
131 CCCCCCGATC-CCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGA-CGATGGTGCCCCGACGAAG
* * *** * *
17530568 AAAAATGCAGCACCAACACATGCCCGAGCCCAGCAT-T--TGCTAG-AAACGGGGA-ATGAACTC
194 AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGATCTG--GTC
* * * * *
17530628 CGTATGCTTATACTGGGAATCAACTCCATATGCTTAGACTGAG-ATGAAACTCCGTATGCCTACG
256 CG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG-AACTCCGTATGCCTAAG
* * * * * * **
17530692 TCAACCTATGAAACGAGCGTGCGGGCTCTCAGCCGGCCAGAGGGGCGAGATGCATAAGCCGGGGA
318 TCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * **
17530757 TCGGCCGGGGTCCCCCTTTGCGTGCTGCTGATCCTGCT-GCTGCAACCCTCAGTC-CGTCCAATC
383 TCGGCC-GGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACCAGCAACCCTCAGTCTGGTCTGATC
* ** *
17530820 TTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGACGGGC
447 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGGGC
* *
17530885 ACTACGTCGTCCAGAGAGAC-GGATGCGTAAGCCGTGGATCGATAGGGT-GTAGGT-GGTTTAGG
512 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
17530947 CACATCTTTATATTTCTACGTGCCAATGCCATTTTTCTGGATTGTAAATTCATACAATGGTCCCT
577 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
17531012 TAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
642 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAAT
* *
17531077 TTTTACAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGAAGACGT
707 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * * *
17531142 GATCCTTGTATTTTTGTTGGAATGCACAAAAACATTCAGCTAAAAACTAGAAGTGTACAAGATTT
772 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
17531207 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
837 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
17531259 CAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGATGTTTGATGAGGGA
1 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
17531324 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGA
66 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* * * * *
17531389 CCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTTCGCCGATGGTGCCCCGGCGAAA
130 CCCCCCCGATC-CCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGGTGCCCCGACGAAG
*** * ** * * * *
17531454 AAAAATATGGCACC-GACACATGCTCGATTCCAGCATGTACCGTTGCAACCCTC-ATTCTGGTCT
194 AAAAATGCAGCACCAG-CACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGA-TCTGGTCC
* *
17531517 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
257 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
17531582 CCCATGAAACAAGCGTGC-AGGCGCTCAGCCGCCCAAAGGGGTGGGATGTGTAAGTCGGGGATCG
322 CCCACGAAACGAGCGTGCGA-GCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCG
* * *
17531646 GCCGAGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCA-CAACCCTCAGTCTGGTGTGATCTTAG
386 GCCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACCAGCAACCCTCAGTCTGGTCTGATCTTAG
* * *
17531710 ACTGGGAATGAACTTCGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGGCGGGCGGGCACTA
451 ACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGGGCACTA
* * ** **
17531775 CATCGGCCAGAGAGACAGGATGCGCAAGCCAAGGATCGATAGGGTGGTAGGTGGGTTTAGGTGCA
516 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
17531840 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
581 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
17531905 CCTTCACGTGAAGTTTCATGTCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTT
646 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTT
* **
17531970 GCGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
711 ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
17532035 CTTGTATTTATTTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
776 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
17532100 ACCATTTGAAAAAAGTGTCCCCCTTTTAGACACTTTAATGGCTACTGG
841 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
17532148 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGA
1 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
17532213 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGT-GCACATCATGTGCGTACACCCCCCCG
66 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCATGTGCGCACA-CCCCCCG
* *
17532277 GCCCCCCCGATACCCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGGTGCCCTGACGAA
129 GCCCCCCCGAT-CCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGGTGCCCCGACGAA
* * *
17532342 -AAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGTAACCCTCGATCTGGTCCG
193 GAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGATCTGGTCCG
* ** *
17532406 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACGGGGAATGAAGGCCGTATGCCTCAGTCAAC
258 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
17532471 CCACGAAACGAGCGTGCGACCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGC
323 CCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGC
* * * * * *
17532536 CAGGTCCCCTTCTGCGTGCTACCAATCTTGCTACCAG-AACCCTCGGTTTGGTCTGATCTTAGAC
388 CGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACCAGCAACCCTCAGTCTGGTCTGATCTTAGAC
* * * *
17532600 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGACGGGCGGGCGGGCACTACG
453 TAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACG
* ** *
17532665 TCGGCCAGAGAGGCGGGATGTACAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATC
518 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
17532730 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGCC
583 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
17532795 TTCACTTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTAC
648 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTAC
* * * **
17532860 GGTTTGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCTGAACTTGGTAGACGTGATCCT
713 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
17532925 TCTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGAG
778 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
17532989 CATTTGAAAAAAGTGTCCCCATTTTAGACACTTTCATGGCTACTGG
843 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
17533035 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATAAGGGG
1 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
17533100 TAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGC
66 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * * **
17533165 ACGCCCGATTGCCGGAACCCCAATGTCGTCGATCAGATTCTCTGGCGATGCTCCGGTGATGGCAC
131 CCCCCCGA-TCCCGGAACCCCAATGCCGTCGGTCAGGTTCT-T--CGA-----C---GATGGTGC
* * ** *
17533230 CCCGATGAAGAAAAATGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGG
184 CCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGA
* * * **
17533295 TCCGGTCCGATCTTGGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCC
249 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
17533360 TAAGTCAACCCACGGAACGAGCATGGGGGTGCTCAGCCGGCCAAAGGGGCGGGATACGCAA-CCA
314 TAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCC-
* * * ** * *
17533424 GGGGATCAGCCGGGTCCCCCTCTTCATGCTGTTGATCTTGCTACC-GTAACCCTCGGTCTGGTCT
378 GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACCAGCAACCCTCAGTCTGGTCT
* * *
17533488 GATCTTAGACTAGGAATTAACTCCGAATGCCTAAGCCAACCAACGAAACGTGCGGGCGGGCGGGC
443 GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAA----CGAGCGGGCGGGC
* * *
17533553 GGGCGGGCACTATGTCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTG
504 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
17533618 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
569 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17533683 CGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT-TATTTTTCATGATTT
634 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * **
17533747 TTTAAACA-TTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAATTAGTTTTGGCCCCAAACTT
699 TTGAAA-ATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
17533811 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAACTAAAAACTCGAAGTGT
763 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
17533876 ACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGG
828 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
17533937 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-AGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
1 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
17534001 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGAC
66 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * *
17534066 CCCCCCGATCATCAGAACCCCAATACCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
131 CCCCCCGATC-CCGGAACCCCAATGCCGTCGGTCAGG-T-T----C--T--T-CGACGATGGTGC
* * * * * * * * * ** *
17534131 CCCGGCGAAGAAAAATACGGCTCCAGCACATGCCCTAGCCCAGTATGCGCTACCGTTACCCTCGG
184 CCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGA
* * *
17534196 TTTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
249 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
17534234 CTAAGTCAAC
Statistics
Matches: 2605, Mismatches: 316, Indels: 92
0.86 0.10 0.03
Matches are distributed among these distances:
885 153 0.06
886 316 0.12
887 232 0.09
888 539 0.21
889 485 0.19
890 4 0.00
894 1 0.00
897 16 0.01
898 252 0.10
900 1 0.00
901 305 0.12
902 293 0.11
903 1 0.00
904 1 0.00
907 1 0.00
909 3 0.00
910 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
CCCCCCGATCCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGGTGCCCCGACGAAGAA
AAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGATCTGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGAGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGG
GTCCCCCTCTGCGTGCTGCCGATCTTGCTACCAGCAACCCTCAGTCTGGTCTGATCTTAGACTAG
GAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCG
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTACGGT
TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
Found at i:17534575 original size:26 final size:26
Alignment explanation
Indices: 17534546--17534598 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17534536 TCGGTCCGAT
17534546 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17534572 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17534598 C
1 C
17534599 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17535463 original size:26 final size:26
Alignment explanation
Indices: 17535434--17535486 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17535424 CCGATTCGAT
17535434 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
17535460 CTTAGATTGGGAATGAATTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17535486 C
1 C
17535487 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17538105 original size:26 final size:26
Alignment explanation
Indices: 17538076--17538128 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17538066 CCAATTCGAT
*
17538076 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17538102 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17538128 C
1 C
17538129 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17539019 original size:25 final size:26
Alignment explanation
Indices: 17538969--17539020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17538959 CCGATCCGAT
*
17538969 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
17538995 CTTAGACTGGGAAT-AACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
17539020 C
1 C
17539021 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:17540758 original size:26 final size:26
Alignment explanation
Indices: 17540722--17540774 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17540712 CCGGTCCGAT
17540722 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17540748 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17540774 C
1 C
17540775 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17541094 original size:894 final size:888
Alignment explanation
Indices: 17539744--17542740 Score: 3777
Period size: 894 Copynumber: 3.4 Consensus size: 888
17539734 ATGCTACGAT
* ** * *
17539744 GATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
1 GATGGTGCCTCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
* * *
17539809 ATCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGTGAATGAACTT
66 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
* ** *
17539874 CGTGTGTGTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGCGGGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGC
* ** * ** * * *
17539939 GTAAGTTGGAGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTC
196 GCAAGCCGGGGATCGACCGGGTCCCCTTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTC
* * * *
17540004 TGGTCCAATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
261 CGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGG
* *
17540069 GCGGGTGAGCGGGCAATTCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
326 GCGGGTGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGG
17540134 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTCTAAATTC
390 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTCTAAATTC
* * * * *
17540199 ATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGCCAACTCGTTTTTTTTTATTTT
455 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG---TTTTCTATTTT
* **
17540264 TCATGAATTTCGATACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
517 TCATGAATTTCGAAACTTTTTAAGGTTCAGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCC
* * ** *
17540329 CCAAACATGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACATAAAAATTTTGCCAAAAACT
581 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA-AAAAATTCAGCTAAAAACT
*
17540394 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATAGCTA
645 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTT-AGACACTTTAATGGCTA
*
17540459 CTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
709 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
*
17540524 GGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCT
774 GGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
17540589 CGGCCCCCTGATCATCGGAACCCCTATACCGTCGGTCAGGTTCTCCGGCA
839 CGGCCCCCTGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACA
* *
17540639 G-TGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCA
1 GATGGTGCCTCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
*
17540703 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC-T
66 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
* * * **
17540767 CTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGCTAGCCAGAGGGGCATGATG
131 C-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATG
* * * * * *
17540832 TGCAAGCCGAGGATCGACCGGGTCCCCGTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTC-GA
195 CGCAAGCCGGGGATCGACCGGGTCCCCTTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAG-
* * ** *
17540896 TCCGGTTCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCTGACCAACGAAACGAACGGGC
259 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC
*
17540961 GGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGT
324 GGGCGGGTGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGT
* * *
17541026 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGTCTTCTAAAT
388 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTCTAAAT
17541091 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
453 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * * *
17541156 CACGATTTTTGAAACTTTTTAAGGTT-AGGGATTTTTTAAAATTTTTTTGGAA-AACCTTTTGTC
518 CATGAATTTCGAAACTTTTTAAGGTTCA-GGATTTTTTAAAA-TTTTTTCGAAGGA-GTTTTGGC
* *
17541219 CCCAAACTTCGTAGACATGATCCTTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
580 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAAC
* * * *
17541284 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTAAGATACTTTAATGGCT
644 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC-CCTTTTAGACACTTTAATGGCT
*
17541349 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
708 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
* *
17541414 AGGGATAGGGGGCCAATATAAGGGCCAAGA-ACCAGCACCCGTCGCACATCATGTCCGCACACCC
773 AGGGATAGGGGGCCAATATAAGGGCCAA-ATACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * *
17541478 CCCGACCCCCTCGATCGTCGGAACCCCAAAACCGCCAGTCAGGTTCTCCGAC-
837 CCCGGCCCCCT-GATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACA
* ** * * * ** * *
17541530 GATGGTGCCCCGTTGAAGAAACATGCGGCACCAGCACATGCCTGAGCCCAGGTTGTGCTGCCACA
1 GATGGTGCCTCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
* * * * * *
17541595 ACCCTCGATTCGGTTCGATCTTAGATTGGGAATGAACTCTGTATGCTTACACTGGGAATGAACTT
66 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
* * *
17541660 CGTATGCCTAAGTTAACCCACGAAACGAGCTTACGGGCGCTCAG-TCGGCCAGAGGGGCGGGATG
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCGGGATG
* ** * * * ** * * *
17541724 TC-TAAATCGGGGATCGATCGGGTCCCTTTCTGTGTGCTGTTGATCCTACTACGGAAACCCTCAG
195 -CGCAAGCCGGGGATCGACCGGGTCCCCTTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAG
* * ** * * * * *
17541788 TCTGATCCGGTCTTAGACTGGGAATGAAATTCGTACGCCTAAGCCAATCGACAAAACG-AC---C
259 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC
* ** * * *
17541849 GGACGGGCAAGCGAGCACTACACCAGCC----AGA---GA---G--A-C---GA--GATA---T-
324 GGGCGGGTGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCGTGGATCGATAGGGTG
* * * *
17541892 GTAGGTCGGTTTAAGTACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
389 GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTCTAAATT
* *
17541957 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTC
454 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
17542022 AT-AATTTTC-AAAATTTTTATGGTTC-GAGATTTTTTAAAATTTTTTCGAAAGGGGTTTTGGCC
519 ATGAA-TTTCGAAACTTTTTAAGGTTCAG-GATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCC
*
17542084 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACT
581 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACT
* * *
17542149 CGTAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTTAGACGCTTTAATGGCTA
645 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-TTTTAGACACTTTAATGGCTA
*
17542214 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGA
709 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
* *
17542279 GGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
774 GGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* ** *
17542344 CCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCTGACTATGCTCCGA
838 CCGG-CCCCCTGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTC---C---G--AC-A
* * * *
17542405 CGATGGTGCCTC-AGGGAAGAAAAATGCGACATCAGCACATGCACGAGCCTAGCATGTGCTACCG
1 -GATGGTGCCTCGA-CGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* * *
17542469 CAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGAGAATGGAC
64 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
** * * *
17542534 TTCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGACGGGAT
129 TTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGAT
* * * * * * *
17542599 GCGCAAGCTGGGGATCGACCTGGTCCCCTTCTGTGTGCTACCCATCTTACTGCCGCAACCCTCTG
194 GCGCAAGCCGGGGATCGACCGGGTCCCCTTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAG
* ** * *
17542664 TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC
259 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC
*
17542729 GGGCGGGCGAGC
324 GGGCGGGTGAGC
17542741 CCAGCATGTG
Statistics
Matches: 1811, Mismatches: 249, Indels: 99
0.84 0.12 0.05
Matches are distributed among these distances:
863 14 0.01
864 265 0.15
865 163 0.09
866 6 0.00
868 1 0.00
869 4 0.00
871 3 0.00
873 1 0.00
874 1 0.00
875 1 0.00
876 256 0.14
877 1 0.00
878 1 0.00
880 11 0.01
881 2 0.00
884 3 0.00
888 22 0.01
890 2 0.00
891 300 0.17
892 300 0.17
893 6 0.00
894 447 0.25
895 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
GATGGTGCCTCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGC
GCAAGCCGGGGATCGACCGGGTCCCCTTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTC
CGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGG
GCGGGTGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
GAATTTCGAAACTTTTTAAGGTTCAGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CTGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACA
Found at i:17542519 original size:26 final size:26
Alignment explanation
Indices: 17542490--17542542 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17542480 CCGGTCCGAT
17542490 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
17542516 CTTAGACTGAGAATGGACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17542542 C
1 C
17542543 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17542807 original size:26 final size:26
Alignment explanation
Indices: 17542778--17542830 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17542768 CCCGTTCGAT
17542778 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17542804 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17542830 C
1 C
17542831 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17542971 original size:288 final size:288
Alignment explanation
Indices: 17542448--17543024 Score: 818
Period size: 288 Copynumber: 2.0 Consensus size: 288
17542438 AGCACATGCA
* * *
17542448 CGAGCCTAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGT
1 CGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCCGTCCGATCTTAGACTGAGAATGAACTCCGT
* * * *
17542513 ATGCTTAGACTGAGAATGGACTTCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTC
66 ATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTC
* * *
17542578 AACCGGCCAGAGGGACGGGATGCGCAAGCTGGGGATCGACCTGGTCCCCTTCTGTGTGCTACCCA
131 AACCAGCCAGAGGGACGGGATGCGCAAGCTGGGGATCGACCTGGTCCCCCTCTGCGTGCTACCCA
* * * *
17542643 TCTTACTGCCGCAACCCTCTGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
196 TCCTACTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
17542708 CAACCGATGAAACGAGCGGGCGGGCGGG
261 CAACCGACGAAACGAACGGCCGGGCGGG
* *
17542736 CGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCCGTTCGATCTTAGACTGGGAATGAACTCCGT
1 CGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCCGTCCGATCTTAGACTGAGAATGAACTCCGT
* * * *
17542801 ATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCAT-GAACTGAGCGTACGGGTGC-
66 ATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAC-GAGCGTACGGGCGCT
* * ** * *
17542864 CTAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCG-GTTGGGTCCCCCTCTGCGTGTTGC
130 C-AACCAGCCAGAGGGACGGGATGCGCAAGCTGGGGATCGACCT-GGTCCCCCTCTGCGTGCTAC
* *
17542928 CGATCCTACTACCGTAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
193 CCATCCTACTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
*
17542993 AGCCAACTGACGAAACGAACGGCCGGGCGGG
258 AGCCAACCGACGAAACGAACGGCCGGGCGGG
17543024 C
1 C
17543025 ACTACGTCGC
Statistics
Matches: 254, Mismatches: 32, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
287 5 0.02
288 249 0.98
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (288 bp):
CGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCCGTCCGATCTTAGACTGAGAATGAACTCCGT
ATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTC
AACCAGCCAGAGGGACGGGATGCGCAAGCTGGGGATCGACCTGGTCCCCCTCTGCGTGCTACCCA
TCCTACTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAACGGCCGGGCGGG
Found at i:17544333 original size:210 final size:211
Alignment explanation
Indices: 17543965--17544384 Score: 646
Period size: 210 Copynumber: 2.0 Consensus size: 211
17543955 AGCTGGGTAC
* * *
17543965 AGGCTCATCTTCATATTTCTGAGTGCCAACACCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGAGTACCAACACCATTATTATGGCTTGTAAATTCATACAATGGTC
** * * *
17544030 CCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAAGTTCATGGAAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
* *
17544095 ACTTTTTACAGATCGGGATCTTTTAAAATTTTTTCGAAAGGTGTTTTGGCCCCAAACTTGGTAGA
131 ACTTTTTACAGATCGGGATCTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTGGGTAGA
17544160 CGTGATCCTTGTATTA
196 CGTGATCCTTGTATTA
** *
17544176 AGGCACATCTTCATATTTCTGCA-TACCAATGCCATTATTATGGCTTGTAAATTCCTACAATGGT
1 AGGCACATCTTCATATTTCTG-AGTACCAACACCATTATTATGGCTTGTAAATTCATACAATGGT
* *
17544240 CCCTTAAGCCTTCACGT-AAAGTTCATGGAAAGACGACTCATTTTTTATTTTTCATGATTTTTGA
65 CCCTTAAGCCTTCACGTGAAAGTTCATGGAAAGACGACTCATTTTCTATTTTTCACGATTTTTGA
* * * *
17544304 AACTTTTTACGGTTCGGGATCTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTGGGTAG
130 AACTTTTTACAGATCGGGATCTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTGGGTAG
17544369 ACGTGATCCTTGTATT
195 ACGTGATCCTTGTATT
17544385 TTTGTTGGCA
Statistics
Matches: 189, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
210 115 0.61
211 73 0.39
212 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (211 bp):
AGGCACATCTTCATATTTCTGAGTACCAACACCATTATTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAAGTTCATGGAAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACAGATCGGGATCTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTGGGTAGA
CGTGATCCTTGTATTA
Found at i:17546523 original size:26 final size:26
Alignment explanation
Indices: 17546494--17546546 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17546484 CTGGTCCGAT
*
17546494 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17546520 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17546546 C
1 C
17546547 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17547420 original size:25 final size:27
Alignment explanation
Indices: 17547385--17547441 Score: 82
Period size: 25 Copynumber: 2.2 Consensus size: 27
17547375 CCGGTCCGAT
17547385 CTTAGACTGGGAATGAA-CACGTATG-
1 CTTAGACTGGGAATGAACCACGTATGC
* *
17547410 CTTAGATTGGGAATGAACCCCGTATGC
1 CTTAGACTGGGAATGAACCACGTATGC
17547437 CTTAG
1 CTTAG
17547442 TCAACCCACG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 16 0.57
26 7 0.25
27 5 0.18
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACCACGTATGC
Found at i:17547821 original size:898 final size:890
Alignment explanation
Indices: 17544176--17551874 Score: 6568
Period size: 867 Copynumber: 8.6 Consensus size: 890
17544166 CCTTGTATTA
* * *
17544176 AGGCACATCTTCATATTTCTGCATACCAATGCCATTATTATGGCTTGTAAATTCCTACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
17544241 CCTTAAGCCTTCACGTAAAG-TTCATGGAAAGACGA--C-TCATTTTTTAT-TTTTCATGATTTT
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCATTTTTCATGTTTTC-T-ATTTT
* * * * *
17544301 TGAAACTTTTTACGGTTCGGGATCTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTGGG
129 TGAAACTTTTTACGGTTC-AGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
*
17544366 TAGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAATTCAGCTAAAAACTCGAAGTGTACA
193 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACA
17544431 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATATT-AGACACTTTAATGGCTACTGGCAGCAA
258 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * *
17544495 ACCTGTAAAATCTCAAATGATCTTTAAGGCGATGTGAGTTCTCGAGGTTTGATGCGGGATAGGAG
322 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
17544560 GCCAATGTAAGGGCCAAGTACTAGTACCCATCGCACATCATGTGCACACACCCCCCCAGCCCTCC
387 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----CC-GCCC-CC
* * * * * * * **
17544625 CGATCACCGGAACCCTAATGCCGTCGATCAGGTTCTCTGGCGATGCTCTGTCGATGGCACCCCGA
445 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
*
17544690 CGAA-AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CC-C--T-CGG
510 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGG
*
17544749 TCCGA---T---C-----T------G-AT-CTTAGACGGGGAATGAACTCCGTATGCCTAAGTCA
575 TCCGATCTTAGACTGGAATGAACACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ** * * *
17544795 ACCCACGAATCGAGCGTGCCGTAGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCG-GGATCG
640 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCG
** * * * * * * *
17544859 GTCGGGTCCCCCTCTGCTTGCTGTCGATCCTACTACCGCAACCCTCAGTCTGATCCGATCTTAGA
705 ACCGGGTCCCCTTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCTGATCTTAGA
* * * * * * *
17544924 CTGGGACTGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGG-GCGA--ACACTACA
770 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGAGGGCACTACG
* **
17544986 CCGGCCAGAGAGACGGGAAGCGCAAGCTATGGATCGATAGGGTGGTAGGTGGGTTT
835 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
**
17545042 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
17545107 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT--TTTCT-AT-TTTTCATGATTTT
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCATTTTTCATGTTTTC-T-ATTTT
* *
17545168 TGAAACTTTTTGCGGTTCAGAATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGG-GCCAAACTTG
129 TGAAACTTTTTACGGTTCAG-ATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTG
17545231 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
192 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTA
*
17545296 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTCGCAGCA
256 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
17545361 AACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTC-GGAGGTTTGATGAGGGATAGGG
321 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
** * *
17545425 GGCCAATATAAACGCCAAGTACCAGCACTCATCGCACATCATGTGCGCACACCCCCCCATTCCCC
386 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCGC---CCCC
* * * * * *
17545490 TCGATCGCCGGAACCCCAATACCGTCGGTCAAGTTCTTCGGCGATGCTCTGGCGATGGTGCCCCG
445 -CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
* * * *
17545555 ATGAAGAAAAATGCGGCTCCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAA-CC-C--T-C-
509 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCG
17545614 G---G-TC-----C---AAT---C-CG-AT-CTTAGACT-GGAATGAACTCCGTATGCCTAAGTC
574 GTCCGATCTTAGACTGGAATGAACACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * ** * * *
17545660 AACCCATGAAACGACCGTGCGGGCGCTCAATTGGCCAAAGGGGTGGCATGCGCAAGCCGGGGATC
639 AACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATC
* ** * *
17545725 GACCGGGTCCCCCTT-TACGTGCTGTCGATCCTGCTGCCGTAACCCTAGGTCTGGTCTGATCTTA
704 GACCGGGT-CCCCTTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCTGATCTTA
* * * * *
17545789 GACAGGGAATCAACTCCGTATGCCTAAGCCAACTGACAAAACGAGC--G-GGCGGGCGGGCACTA
768 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGAGGGCACTA
*
17545851 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
833 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
17545909 AGGCACATCCTCATATTTTTGCATGCCAATGCCATTTTTAGGGCTTGTAAATTCATACAGTGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
17545974 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA--C-TCATTTTCCAT-TTTTCATGATTTT
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCATTTTTCATGTTTTC-T-ATTTT
* * * * **
17546035 TGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTAGCCCTAAACTTCA
129 TGAAACTTTTTACGGTTC-AGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
* * * *
17546100 TAGACGTGATCATTGTATTTTTTTTGGCATGCACAAAAGAAATCAGCTCAAAACTCGAAGTGTAC
193 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
17546165 AAGATTTTGTGACCATTTGACAAAGGTGTCCCCATTTTAAACACTTTAATCGCTACTGGCAGCAA
257 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
17546230 ACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCCAGGTTTGATGATGGATAGGGG
322 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
17546295 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCG
387 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----CCGCCCCCCG
** * * * ** * ** **
17546360 ATCAACGGAACCCCAATGCCGTCGATCAGGTTCTCTGATGATGCTCCGGCGATATTGCCCCGGTG
447 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
* * * * *
17546425 AAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTAGGTCTGGTC
512 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTC
* *
17546490 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAATTCA
577 CGATCTTAGACT-GGAATGAACAC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
17546555 ACACACGAAACGAGCGCGCGGGCGCTCAACAGGCCAGATGGGTCGGATGCACAAGCCGAGGATCG
640 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCG
* *
17546620 ATCGGGT-CCCTCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCTGATCTTAG
705 ACCGGGTCCCCT-TCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCTGATCTTAG
* * * * *
17546684 ACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAATGAACGGGCGGCCGAGTGGGCACTA
769 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGAGGGCACTA
* * * *
17546749 CGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATATGGTGGTTGGTGGGTTT
833 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * ** *
17546807 AGGCACGTCTTCATATTTTTGTGTGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
17546872 CCTTAAGCCTTCACGTTAAGTTTCATGGCAAGATGACTCG----TTTTC-TGATTTTCATAATTT
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCATTTTTCATG-TTTTC-T-ATTT
** *
17546932 TTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCTTAAACATG
128 TTGAAACTTTTTACGGTTC-AGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
* *
17546997 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCAAAGTGTA
192 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTA
* * * *
17547062 CAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCCTTTAAGACACTTTAATGGTTACTGGCAGCA
256 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* **
17547127 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTAAGGTTTGATGAGGGATAGGG
321 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* ** *
17547192 GGCCAATTTAAGGGCCAAGTATGAGCACCCATCACACATCATGTGCGCACA-C-CCCCCCGATCG
386 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCCCCGATCG
* * * * * * * * *
17547255 CTGGAACCACAATGTCGCCGGTCAGGTTCACCGGTGATGTTTCGATGATGGTGCCCCAACGAAGA
451 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
* * *
17547320 AAAATGTGGCACCAGCACATGCCCGAGCCCAGGATCTGCTGCCGTAACCCTCGGTCCGGTCCGAT
516 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGAT
* * *
17547385 CTTAGACTGGGAATGAACACGTATGCTTAGATTGGGAATGAACCCCGTATGCCTTAGTCAACCCA
581 CTTAGACT-GGAATGAACACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
17547450 CGAAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGTGGGATGTGCAAGCCGAGGATCGATCGG
645 CGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGACCGG
* ** ** *
17547515 GTCCCCTTCTGCATGCTG-CTGATTTTGCTGCCGTAACCCTCGGTTTGATCTGATCTTAGACTGG
710 GTCCCCTTCTGCGTGCTGTC-GATCCTGCTGCCACAACCCTCGGTCTGATCTGATCTTAGACTGG
*
17547579 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGAGGGCACTGC-CCG
774 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGAGGGCACTACGCCG
* *
17547643 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGCTT
838 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
17547696 AGGCACATCTTCATACTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
17547761 CCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGT--TTTCT-AT-TTTTCATGATTTT
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCATTTTTCATGTTTTC-T-ATTTT
* * * * * *
17547822 TAAAACTTTTTATGGTTTAGGATTTTTTAAAATTTTTTCGGAGGGAGTTTTGGCCCCAAAACTTT
129 TGAAACTTTTTACGGTTCA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC-AAACTTG
* * *
17547887 TTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAATTCAGCTAAAAACT-GTATGTGTA
192 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCG-AAGTGTA
* * *
17547951 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCCTTTCAGACACTTTAATGGCTGCTAGCAGCA
256 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
17548016 AACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTAT-GAAGGTTTGATGAGGGATAGG
321 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGG
*
17548080 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCGGCCCCC
385 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CC-GCCCCC
* * * * * * * * * *
17548145 CGATCGTCGGAACCCTATTTCCGCCAGTGAAGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGG
445 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* * * * *
17548210 GGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGG
510 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGG
* * * *
17548275 TCTGATCTTAGACTAGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCCGTATGCCCAAGT
575 TCCGATCTTAGACT-GGAATGAAC-ACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
17548340 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCTGCTAGAGGGGCGGGATGCTCAAGCCGGGGAT
638 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGAT
* * * * * *
17548405 CGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCCACAACCCTCGATCTGGTCTGATCTTA
703 CGACCGGGTCCCCTTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCTGATCTTA
* * *
17548470 GAATGGGAATGAACTCCATATCCCTAAGCCAACCGACGAAACGAGCGGGCAGGC----GGGCACT
768 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGAGGGCACT
*
17548531 ACGCCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
832 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
17548590 TGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
17548655 CCTTAAGCCTTCATGTGAAGTTTTATGGCAAGACGACTCG--ATTTCT-AT-TTTTCACGATTTT
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCATTTTTCATGTTTT--CTATTTT
** * * * ** * *
17548716 CAAAACTTTTTACGGTTCGGTATTTTTTAAAATCTTTTCGGAAGGAGTTTTGAACCCAAAATAGG
129 TGAAACTTTTTACGGTTCAG-ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
*
17548781 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGTTAAAAACTCGAAGTGTACA
193 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
17548846 AGATTTTGTGACCATTTG-AAAACGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAA
258 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
17548910 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG
323 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
17548974 CTTAATATAAGGGCCAAGTACCAGCACCCATCGCACATAACGTGTGCACACCCCCCTTGGACCCC
388 C-CAATATAAGGGCCAAGTACCAGCACCCATCGCACAT--CATGTGCGCA--CACC---G-CCCC
* * *
17549039 CCGATTGCCGGAACCCCAATGCCGCCGGTGAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
444 CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
* * * ** * **
17549104 ACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTACTATCGCAACCCTCGGTCTA
509 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCG
* * * *
17549169 GTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTTCGTATGCCTAAG
574 GTCCGATCTTAGACT-GGAATGAAC-ACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** * *
17549234 TCAACGCACGAAATGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCTGAGGG
637 TCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGA
* * ** * *
17549299 TC-AGCCAGGTCCCCCTT-TGTGTGCTACCGATCCTGCTGTCACAACCCTCGGTC-CAGTCTGAT
702 TCGA-CCGGGT-CCCCTTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGA-TCTGAT
** * * * * *
17549361 CTTAGA-TGGGGAATGAACTCCGTATGCCTAAGTTAACCAACGAAACGAAC--G-TG-TGG-GCG
764 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGAGGG
* * * * * ** ** * * * * *
17549420 CTC-A-GCCAGCTAGAGGGGCACGATGCGCAAGCCG-GG-TCCCCCTCTGCGTGCT--GTCGATC
828 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT--CGAT-AGGGTGGTAGGTGGGT-
17549479 CTGCT
889 -T--T
* * * * ** * *** * *
17549484 ATCGCA-ACCCTCGATCTGGTT-TGATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGTCAAC
1 A-GGCACATCTTC-ATAT--TTCTG--C----A-TGCCAATGCCA-TTTTTATGGCT-TGT-AA-
*** * ** * **
17549546 CGACGAAATGAGCGGGCAGACGGGTGGTCAGGCAC-TACGCCGGC-CAGAGAGACG--GGATGCG
51 --A-TTCAT-A-----CA-A----TGGTC---C-CTTAAGCCTTCAC-GTGA-A-GTTTCATG-G
* * **
17549607 CAAGCCGTGGA-TCGAT-AGGGTGGT-AGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCA
94 CAAGAC---GACTCG-TCA--TTTTTCA--T--GTTT-------TC-T-AT-TTT-----TG--A
* * * ** * ** ** *
17549669 ATGCCATTTTTATGGCCTGT-A-AATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCAT
132 A--AC-TTTTTACGG--T-TCAGATTTTTTAAAAT--T---TT--TTC-GAAAG-G-AGTTT--T
*** * * * * * ** * * ** *
17549732 GGCAAGACGACTCGTTATCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
179 GGCCCCA-AACTTGGTA--GA-----CGTGATCCTTG-TA-TTTTT---GTT-GGCA---TGCAC
** ** * * ** *
17549797 AATTTTTTCGAAAGGATTTTTGGCCCAAAACTTGGTAGATGTGATCCTTGTATTTTTTTTTGCAT
227 AA--------AAA--A--TTCAGCTAAAAAC-TCG-A-A-GTG-TACAAG-A---TTTTGTG-A-
**** ***
17549862 GCACAAAAAAATTCACCTAAAACCTCGAAGTGTACAGGATTTTGTGACTATTTGAAAAAAGTGTC
269 -C-CATTTG---------AAAA-----AAGTGT-CCCCA--TT-T--C-A---G-----A----C
* *
17549927 TCCATTTCAAACACTTTTGTGGCTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
299 -AC-TTT-AA---------TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
17549992 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGCGCCAAGTACTAGCACCCA
352 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *** *
17550057 TCGCACATCATGTGCGCACA-CACCCCCTGA-C-CC----CCCCGAT--CGCCGG--A-ACCCTA
417 TCGCACATCATGTGCGCACACCGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * * * * *
17550110 ATGCCAT-C-CTG-CGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCA
482 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
17550172 GCATGTGCTGCCGCAGCCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTGAG
547 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAAC-ACGTATGCTTAG
* * * * **
17550237 ACTGGGAATGAACTCCGGATGCCTAAATCAAGCCACGAAACGAGCGTGCTGGCGCTCAGTCGGCC
610 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCC
* * * * * * * * * *
17550302 AGAGGGGCGAGATGCGCAAGCTG-GGATCGGCCAGGTCCCCCTCTGCGTGCTGCCAATCTTGCTA
675 AGAGGGGTGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCTTCTGCGTGCTGTCGATCCTGCTG
* ** *
17550366 CCGCAACCCT-GGATCCAATCTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
740 CCACAACCCTCGG-TCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * *
17550430 TGAAACGAGAAGGAGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCA
804 CGAAAC--G-A-GCGGGC-GGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
17550495 TGGATCGATAGGGTGGTAGGTGGGTTT
864 TGGATCGATAGGGTGGTAGGTGGGTTT
* ** *
17550522 A-GTACATCTTCATATTTCTATATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
17550586 CTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT--TTTCT-AT-TTTTCACGATTTT
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCATTTTTCATGTTTT--CTATTTT
** * * * * * *
17550647 CCAAACTTTGTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAAGAGATTTGGCCCCAAACTTTG
129 TGAAACTTTTTACGGTTC-AGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
* * *
17550712 TAGGCGTGATCCTTGTATTTTTGTCGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
193 TAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
17550777 AATATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACCTTAATGGCTACTGGCAGCAA
257 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
17550842 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTTATGATGGATAGGGG
322 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
17550907 CCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-C-CCCCCCG---G-
387 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCCCCGATCGC
* ** * * *
17550966 C---A-CCC--T--CGATC-GTC-GGAAC-CC--CAATGCCGTCCGACGATGGCGCCCC-AGTGA
452 CGGAACCCCAATGCCG-CCGGTCAGGTTCTCCGGCGATG-C-TCCGACGATGGTGCCCCGA-CGA
* * *
17551017 AGAAAAATACGGCACCAGCACATGCCCGAGCCGAGCATGTGCTGCCGCAA----C---CC--TCC
513 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCC
* * *
17551073 G----T---C-GG-AT---C-TG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAAGC
578 GATCTTAGACTGGAATGAACACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
17551123 CACGAAATGAGCGTGCGGGCGCTCAGCCGCCCAGAGGGGCGGGATGCGCAAGCCGAAGATCGATC
643 CACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGACC
* ** * ** * **
17551188 GGGTCCCCTTCTGTGTGCTACCGATCCTGCTACTGCAACCCTTGGTCTGGGCTGATCTTAGACTG
708 GGGTCCCCTTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCTGATCTTAGACTG
* * *
17551253 GGAATGAACTTCTTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGC-GGA---CACTACGCT
773 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GCGGGAGGGCACTACGCC
* * * * *
17551314 GACCAGAGAGATGGGATGCACAAGTCGTGGATCGATAGGTTGGTAGGTGGGTTT
837 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
17551368 TGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATGCGTACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
17551433 CCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT--TTTCT-AT-TTTTCATGATTTT
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCATTTTTCATGTTTTC-T-ATTTT
** * * * * *
17551494 CCAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTTG
129 TGAAACTTTTTACGGTTC-AGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
** * *
17551559 TAGGTGTGATCCTTGTATTTTTGTCGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTAC
193 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
17551624 AAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTTATGGCTACTGGCAGCAA
257 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
17551689 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTGTCGAGGTTTGATAAGAGATAGGGG
322 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
17551754 GCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCTCCGGGCCC
387 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-------CC--GCCC
* * *
17551819 CCCGATCGCCGGAACCCCAATGCCACCTGTCAGGTTCTCCGGTGATGCTCCGACGA
443 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGA
17551875 AGAAAAATGC
Statistics
Matches: 5626, Mismatches: 831, Indels: 746
0.78 0.12 0.10
Matches are distributed among these distances:
845 1 0.00
846 54 0.01
847 400 0.07
849 3 0.00
850 7 0.00
851 1 0.00
852 1 0.00
853 83 0.01
854 92 0.02
855 4 0.00
857 1 0.00
858 7 0.00
860 2 0.00
861 3 0.00
862 1 0.00
863 4 0.00
864 8 0.00
865 8 0.00
866 326 0.06
867 668 0.12
868 180 0.03
869 69 0.01
870 8 0.00
871 10 0.00
872 12 0.00
873 2 0.00
874 6 0.00
875 5 0.00
876 3 0.00
877 7 0.00
878 2 0.00
879 64 0.01
880 125 0.02
882 1 0.00
886 3 0.00
888 1 0.00
889 397 0.07
890 252 0.04
891 174 0.03
892 149 0.03
893 106 0.02
894 396 0.07
895 319 0.06
896 145 0.03
897 197 0.04
898 451 0.08
900 1 0.00
901 1 0.00
902 1 0.00
903 13 0.00
904 3 0.00
905 3 0.00
907 1 0.00
908 3 0.00
909 2 0.00
910 4 0.00
911 6 0.00
915 2 0.00
916 5 0.00
920 5 0.00
923 13 0.00
924 8 0.00
925 3 0.00
926 4 0.00
927 2 0.00
928 2 0.00
929 6 0.00
930 3 0.00
932 2 0.00
933 2 0.00
934 3 0.00
935 4 0.00
936 1 0.00
937 2 0.00
938 9 0.00
940 2 0.00
942 6 0.00
943 3 0.00
949 2 0.00
950 5 0.00
952 4 0.00
953 18 0.00
955 1 0.00
956 6 0.00
957 1 0.00
958 10 0.00
960 1 0.00
961 2 0.00
962 1 0.00
963 5 0.00
965 8 0.00
966 10 0.00
968 5 0.00
969 1 0.00
970 1 0.00
973 10 0.00
974 1 0.00
975 6 0.00
976 2 0.00
978 18 0.00
979 4 0.00
981 2 0.00
982 4 0.00
988 3 0.00
989 3 0.00
990 3 0.00
991 1 0.00
992 1 0.00
994 8 0.00
995 2 0.00
996 4 0.00
997 1 0.00
998 3 0.00
999 4 0.00
1000 1 0.00
1001 3 0.00
1003 6 0.00
1004 4 0.00
1005 3 0.00
1006 2 0.00
1007 9 0.00
1008 13 0.00
1009 1 0.00
1011 5 0.00
1015 1 0.00
1016 2 0.00
1017 3 0.00
1021 1 0.00
1022 7 0.00
1023 3 0.00
1024 47 0.01
1025 15 0.00
1026 45 0.01
1027 33 0.01
1028 42 0.01
1029 93 0.02
1030 192 0.03
1031 25 0.00
1032 30 0.01
1033 22 0.00
1034 8 0.00
1035 6 0.00
1036 11 0.00
1037 13 0.00
1038 27 0.00
1039 11 0.00
1040 17 0.00
1041 30 0.01
1042 9 0.00
1043 11 0.00
1044 13 0.00
1045 2 0.00
1046 4 0.00
1047 5 0.00
1048 3 0.00
1049 2 0.00
1050 2 0.00
1051 9 0.00
1053 108 0.02
1054 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCATTTTTCATGTTTTCTATTTTTG
AAACTTTTTACGGTTCAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCCCCGATCGCCGGA
ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAG
ACTGGAATGAACACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGACCGGGTCCCC
TTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGAGGGCACTACGCCGGCCAGAGA
GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
Found at i:17548319 original size:26 final size:26
Alignment explanation
Indices: 17548281--17548331 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17548271 CTGGTCTGAT
17548281 CTTAGACTAGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
*
17548307 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17548332 GCCCAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:17549214 original size:26 final size:26
Alignment explanation
Indices: 17549176--17549228 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17549166 CTAGTCTGAT
17549176 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
17549202 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17549228 C
1 C
17549229 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17550245 original size:26 final size:26
Alignment explanation
Indices: 17550209--17550258 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17550199 GTCTGATCTT
*
17550209 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCGGATGCTG
17550235 AGACTGGGAATGAACTCCGGATGC
1 AGACTGGGAATGAACTCCGGATGC
17550259 CTAAATCAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.20
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGGATGCTG
Found at i:17553342 original size:12 final size:12
Alignment explanation
Indices: 17553325--17553358 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
17553315 GATGAGGGAT
*
17553325 TAGGGGCCAATA
1 TAGGGGCCAACA
17553337 TAGGGGCCAACA
1 TAGGGGCCAACA
*
17553349 TAAGGGCCAA
1 TAGGGGCCAA
17553359 GTACCAGCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.35, C:0.21, G:0.32, T:0.12
Consensus pattern (12 bp):
TAGGGGCCAACA
Found at i:17553563 original size:26 final size:26
Alignment explanation
Indices: 17553534--17553586 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17553524 TCGATCCGAT
*
17553534 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
17553560 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17553586 C
1 C
17553587 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:17554458 original size:26 final size:26
Alignment explanation
Indices: 17554429--17554481 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17554419 CCGGTCTGAT
17554429 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
17554455 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
17554481 C
1 C
17554482 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:17555191 original size:903 final size:897
Alignment explanation
Indices: 17551939--17555726 Score: 4724
Period size: 892 Copynumber: 4.2 Consensus size: 897
17551929 GGTCCGGTTC
* * * *
17551939 GATCCTAGACTGGGAATGAACTCTGTATGCCTAAACCAACCGACGAAACGAGCGGACGGGC-G-G
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCG
* * * * *
17552002 GCAGGCACTACGTCTGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGG
66 GCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
17552067 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * * *
17552132 GTCACTTAAGCCTTCACATGAAGCTTCATGGCAGGACGACTCGTTTTCTATTTTTAATGATTTTG
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * ** * * *
17552197 GTAAGTTTTTGCGGTCGA-GATTTTTTAAAAATTTTTCGGAAGGATTTTTGGGCCCAAACTTGGT
261 GAAACTTTTTGCGGTTTAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
17552261 AGATGTGATCCTTGT-TTTTCTGTTGGCATGCACAAAAAAATTC-GATTAAAAACTCGAAGTGTA
326 AGACGTGATCCTTGTAATTT-TGTTGGCACGCACAAAAAAATTCAG-CTAAAAACTCGAAGTGTA
*
17552324 CAAGATTTTGTGACCATTTGAAAAAAGT-TCCCCATTTCAGACACTTTAATGGCTACCGGCAGCA
389 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
17552388 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
17552453 GACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAC-ACCCACCGGCCCCT
519 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCC-CCGGCCCCC
* ** * * ** *
17552517 TCGATCGTCAAAACCCCAACGCCGCCGGTCAAGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCG
583 CCGATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCT-C-GCGATGCTCCGACGATGGTGCCCTG
* * *
17552582 ACGAAGAAAAATGCGGCACCAGCACATGCCC-AGGCCCAGCTTGTGCTGCCGTAA-CC-C--T-C
645 ACGAAGAAAAATACGGCACCAGCACATGCCCGA-G-CCAGCATGTGCTGCCGCAACCCTCATTCC
17552641 -A---G-TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
708 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
17552685 GTCAACCCACGAAACGAGTGTACGGGCACTCAGCCGGCCAGAGGGACGGGATGCACAAGCC-GAG
773 GTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCACAAGCCAG-G
* * * * * * * * * ** **
17552749 GATCGGTCGGGTCCCCCACTGCATACTCCCGATCCTACTGCCACAACCCTCGATTC-AATCC
837 GATCAGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTC-AGTCTGGTAT
* *
17552810 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGCGGGCGGGA
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG-
* ** * *
17552875 GGGCGGGCACTACACCGACCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTG
64 CGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
17552940 GGTTTATGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAA
129 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17553005 TGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTT
194 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
17553070 TTAAAAATTTTTACGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTT
259 TTGAAACTTTTTGCGGTTTAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * *
17553134 GGTAGGCGTGATCCCTGTACTTTTGTTGGCACGCA-AAAAAAA-TCAGCTAAAAACTCGATGTGT
323 GGTAGACGTGATCCTTGTAATTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
17553197 ACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCCATTTCAGACACTTTAATGGCTACTGGCAG
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
17553262 CAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTA
452 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TA
* *
17553327 GGGGCCAATATAGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC-
516 ---G--------GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
17553391 A-------CCACCCCGATTGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCTGACGATGCTCTGA
570 ACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC-GGTCAGGTTCTC-G-CGATGCTCCGA
* * * * * *
17553449 CGATGGTGCCTTGGCGAAGAAAAATGCAGCACCAGCACATGCCCTAGCCCAGCATGTGCTGCCGT
632 CGATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAG-CCAGCATGTGCTGCCGC
* * * *
17553514 AGCCCTCGCTT-CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAAAGAAC
696 AACCCTC-ATTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
17553578 TCCGTATGCCTAAGTCAACTCATGAAACGACCGTGCGGGCGCTCAGCCGACCCGAGGGGCGGGAT
760 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGAT
* * * * * * *
17553643 GCACAAGCTAGGGATCCA-TCGGGTCCCCCTCAGTGTGCTGTCGATACTGCTACCGCAACCCTCA
825 GCACAAGCCAGGGAT-CAGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCA
* * *
17553707 TTTTGGTCT
889 GTCTGGTAT
* *
17553716 GATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCAACGAAACGAGC-GG-GGG-GG-G
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCG
* *
17553777 G-GAGCACTATGTCGGCCAGAGAGAC-AGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GCGGGCACTACGTCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * * *
17553840 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGACATTCTTATGGCTTGTAAAATCATAAAAT
130 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
**
17553905 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGTGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* ** * **
17553970 TGAAACTTTTTGAGGTTCGGGA-TTTTGAAAATTTTTTCGGAAGGAGTTTTTACCCCAAACTTGG
260 TGAAACTTTTTGCGGTTTAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
17554034 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
325 TAGACGTGATCCTTGTAATTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
17554099 AAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTATTGGCAGCAA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
17554164 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATAAGGGATAAGGG
455 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
17554229 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCC
520 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCGGCCCCCCC
* *
17554294 GATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCTGAA
585 GATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCT-C-GCGATGCTCCGACGATGGTGCCCTGAC
*
17554359 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCAGGCATGTGCTGCCGCAACCCTCATTCCGGT
647 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCA-GCATGTGCTGCCGCAACCCTCATTCCGAT
* * * * *
17554424 CTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAATC
711 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
17554489 AACCCATGAAACGAGCGTGCAGGCGCTCAACC-AGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
776 AACCCATGAAACGAGCGTGCGGGCACTCAGCCGA-CCAGAGGGGCGGGATGCACAAGCCAGGGAT
* * * * *
17554553 CAGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTACTATCGCATCCCTCGGTCTGGTAT
840 CAGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCAGTCTGGTAT
* *
17554611 GATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGCGGGCGGGCAGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGC
** *
17554676 TGGCGGGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
65 -GGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
17554741 GGTTTAGGCACATCTTCATATTTCTGTGTTCCAATGCCATTTTTCTAGCTTGTAAATTCATACAA
129 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17554806 TGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTT
194 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
*
17554871 TTGAAACTTTTTGCGGTTTAGGATTTTTTAAAATATTTTT-GGAAGGAGTTTTGGCCCCACACTT
259 TTGAAACTTTTTGCGGTTTAGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
17554935 GGTAGATGTGATCCTTGTAATTTTGTTGGCACACACAAAAAAATTCAGCTAAAAACTCAAAGTGT
323 GGTAGACGTGATCCTTGTAATTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
17555000 TCACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
17555065 AAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGACGAGGGATAGG
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
17555130 GGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACCTCATGTGCGCACAACCCCCGGCCCTC
518 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCGGCCCCC
* * * *
17555195 TCGATCGTCGGAACCTCAATGCTGCCGGTCAGG-T-T--C--T--T-CGACGATGGTGCCCCGAC
583 CCGATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCTCGCGATGCTCCGACGATGGTGCCCTGAC
* * * * ** *
17555251 GAAGAAAAATATGGCACCAGCACATGCCCGAGGCCAGCTTGTGTTGTCGCAACCCTCGGTCTGAT
647 GAAGAAAAATACGGCACCAGCACATGCCCGA-GCCAGCATGTGCTGCCGCAACCCTCATTCCGAT
* * * *
17555316 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGCC
711 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
17555381 AACCCATGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGTGGGATGCGCAAGCCAGGGATC
776 AACCCATGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCACAAGCCAGGGATC
* ** * * * * ** * * **
17555446 -GACCGGGTCCTCCTCTATGTGCTACCGGTCCTGCTGCTTCAACCCTTAGTCCGGTCC
841 AG-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCAGTCTGGTAT
* * * *
17555503 GATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAATCGATGAAACGAGCGGGCGGGCTGAC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGC
* *
17555568 GAGCGGGCACTACGTCGGCCAAAGAGACGAGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTG
65 G-GCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
17555633 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
129 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
17555698 TGGTCCCTTAAGCCTTTACGTGAAGTTTC
194 TGGTCCCTTAAGCCTTCACGTGAAGTTTC
17555727 TTGCCAATAT
Statistics
Matches: 2531, Mismatches: 300, Indels: 151
0.85 0.10 0.05
Matches are distributed among these distances:
871 55 0.02
873 1 0.00
874 46 0.02
875 195 0.08
876 158 0.06
877 5 0.00
879 3 0.00
880 99 0.04
881 3 0.00
882 1 0.00
885 2 0.00
886 1 0.00
887 49 0.02
888 49 0.02
889 1 0.00
890 2 0.00
891 2 0.00
892 422 0.17
893 6 0.00
894 8 0.00
895 315 0.12
896 5 0.00
897 4 0.00
898 71 0.03
899 284 0.11
900 54 0.02
901 4 0.00
902 197 0.08
903 298 0.12
904 12 0.00
905 7 0.00
906 170 0.07
907 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCG
GCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTGCGGTTTAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTAATTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCGGCCCCCCCG
ATCGTCGGAACCCCAATGCCGCGGTCAGGTTCTCGCGATGCTCCGACGATGGTGCCCTGACGAAG
AAAAATACGGCACCAGCACATGCCCGAGCCAGCATGTGCTGCCGCAACCCTCATTCCGATCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ATGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCACAAGCCAGGGATCAGCCG
GGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCAGTCTGGTAT
Found at i:17557722 original size:26 final size:26
Alignment explanation
Indices: 17557682--17557734 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17557672 CTGATCTGAT
*
17557682 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17557708 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17557734 C
1 C
17557735 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17558614 original size:25 final size:25
Alignment explanation
Indices: 17558586--17558633 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
17558576 TCCGATCTTA
17558586 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
17558611 GACTGGGAATGAACTCCGTATGC
1 GACTGGGAATGAACTCCGTATGC
17558634 CTAGGTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:17559536 original size:26 final size:26
Alignment explanation
Indices: 17559482--17559537 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
17559472 CCAATCCAAA
* *
17559482 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGCACG
*
17559508 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGCACG
17559534 CTTA
1 CTTA
17559538 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCACG
Found at i:17559951 original size:901 final size:896
Alignment explanation
Indices: 17555729--17561486 Score: 6786
Period size: 903 Copynumber: 6.5 Consensus size: 896
17555719 GAAGTTTCTT
* *
17555729 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAGC-CTCCCCGCTCAACC
1 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACCCCCCG-GC--CC
* * * * *
17555793 CCCCGATCGTCGGAACCCCAATGTCACTGGTCAGGTTTTCCGA----CGATG--GTGCCCCGACG
62 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGCTCGATGATGTGCCCCGGCG
** * * *
17555852 AAGAAAAATGTGGCACCAGCACATGCCCGAACCCAGCATGTGCTGTCGCAACCCTC-GATCCAGT
127 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCCAAT
* * * * **
17555916 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGAAATGAACTCCATACACCTAAGTC
191 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
17555981 AACCCATGAAACAAGCGTGCGGGCGCTCAGCTGGCTAGATGGGTAGGATGCACAAGCCGGGGATC
256 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATC
** * ** * * * * ** * *
17556046 GGTCGGGTCCCTTTTTACGTGCT-ACTGATCCTGCTTCCGTAACCTTTGGTCTGGTTTGATCTTA
321 GGTCGGGTCCCCCTCTGTGTGCTGTC-GATCCTGCTGCCATAACCCTCAGTCCGGTCTGATCTTA
* * *
17556110 GAATGGGAATGAACTTCGTATGCCAAAGCCAACCGATAAAACG-AACGAGCGAGCGGGCGATCGA
385 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCG-----ACGAAACGAGCG-G-GGG-G--CG-
* * * * * *
17556174 ACGAGCGGGAGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGGATTGATAGGGTGG
439 --G-GCGGGCGGGCACTATGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
17556239 TAGGTGGGTTTAGGCAGATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCCTGTAAATTC
501 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * * *
17556304 ATACAATGGTCACTTAAGCCTTTACGTGAAGTTTCATGGCAAGATGACTCTTTTTTCTATTTTTT
566 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTC
* *** ** *
17556369 ATGATTTCCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCC
630 ACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAA-TTTTTTGAAAGGAGTTTTGGCCCC
* *
17556434 AAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
694 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
17556499 AAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTATCCCTA-TTCAAGACACTTTAATGGCTAT
759 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTAC
* * * *
17556563 TGCCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCAAGGTTTGATGAG
823 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
17556628 GGATAGGGG
888 GGATAGGGG
* * * *
17556637 GCAAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCGGCCCTCC
1 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
* * * * *
17556702 CGATCGTCAGAACCCCAACGTCGCTGGTCAGGTTCTCCGA----CGATG--GTGCCCCGACGAAG
65 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGCTCGATGATGTGCCCCGGCGAAG
* * *
17556761 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCTGTAACCCTC-G----AT-C--
130 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAATCCGA
17556818 -C-----C---------A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
195 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
17556865 CAAGAAACGAGCGTGCGGGTGTTCAGCCGACCAGAGGGTCAGGGTGCACAAGCCGGGGATTGGTC
260 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTC
* * * * *
17556930 GGGGCCCCCACTATGTGCTGTTGATCCTGCTGCCATAACCCTCAGTCTGGTCTGATCTTAGACTG
325 GGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCATAACCCTCAGTCCGGTCTGATCTTAGACTG
* * * * * * *
17556995 GGAATGAAATTCGTATGCCTAAGCCAGCCAACGAAATGAGC---GGGCAGGC--GC---TAC-AT
390 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGCGGGCGGGCGGGCACTAT
*
17557051 --CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
455 GCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
17557114 CTTCATATTTTTGCTTGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGC
520 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
17557179 CTTCACGTGAAGTTTCATGGCAAGACGACTCGCTTTCTATTTTTCACGATTTTTGAAACTTTTTA
585 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* *
17557244 CGGTTTG-GTATTTTTTAAAATATTTTTAGAAA-GAGTTTTGACCCCAAACTTGGTAGACATGAT
650 CGGTTTGAG-ATTTTTTAAAAT-TTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
17557307 CCTTGTATTTTTGTTGGCATGCACGAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
712 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
17557372 GACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
777 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
17557437 TCTCAAATGCTCTTTAA-GGGGTGTGGGTTCTTGAGGTTTGATGAGGGATAGAGG
842 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
17557491 GCCAATATAAGGGCCAACTACCAGCACCCAACGCACATCATGTGCGCACACCCCACCCGGCCCCC
1 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCCCCC
** * * * * * *
17557556 CCGATCACCAGAACCCCAATACCACCGGTCAGGTTATCC-A-G--CGATG--GTGCCCCGACAAA
64 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGCTCGATGATGTGCCCCGGCGAA
* * * * * * * ** *
17557615 GAAACATCCGGCACAAGCACATGCCCGAGCCCAGCATGTGTTGTCGCCACCCTCGGTCTGATCTG
129 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAATCCG
*
17557680 ATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
194 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
17557745 CCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCGGGATGCGCAAGCCAGGGATCGGT
259 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCGGT
* * * * * * * *
17557810 CGGGTCCCCTTTTGTGTGCTGCCGTTCCTACTGCCATAACCCTCGGTCCGGT-TCAATCTTAGAT
324 CGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCATAACCCTCAGTCCGGTCT-GATCTTAGAC
* * * *
17557874 TGGGAATGAACTCTGTATTCCTAAGCCAACCGATGAAACGAGC---GGGCGAGCGGGCGGGCACT
388 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGCGGGCGGGCGGGCACT
* * * *
17557936 ACGTCAGCCAGAAAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
453 ATGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
17558001 ATCTTCATATTTCTGCATACCAATGCCATTTTTTTGGCCTGTAAATTCATACAATGGTCCCTTAA
518 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
17558066 GCCTTTACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTT
583 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
** *
17558131 TGTGG-TTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
648 TACGGTTTGA-GATTTTTTAAAATTTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
17558195 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTTCAAGATTTTG
711 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
17558260 TGACGATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAA
776 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
17558325 ATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
841 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
17558381 GCCAATATAAGGGCCAAGTAGCAGCACCCATCACACATCTTGTGCGCACACCCCCCTGGCCCCCC
1 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCC
* * * * * * * *
17558446 CGACCGCCGGAACCCCAACGCCACTGGTTAGGTTCTTCGGCGATGCTTCGACGATGGTGCCCCGA
65 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-TC--CGATGC-TCGATGAT-GTGCCCCGG
* ** * * * * *
17558511 CAAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAACATGTGCTGCTGCAACCCTCGGTCCCA
125 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAA
*
17558576 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTT-GACTGGGAATGAACTCCGTATGCCTAGGT
190 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
17558640 CAACCCACGAAATGAGCGTGCGGGTGTTCAGCCGGCCAGAGGGTCAGGATGCACAAGTCGAGGAT
255 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGAT
* * * * * * *
17558705 CGATCGGGTCCCCCTCTGTGTGCTGTTGATCCTGTTGCCGTAACCCTCGGTCCGGTCTAATCTGA
320 CGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCATAACCCTCAGTCCGGTCTGATCTTA
* * * * * *
17558770 GACTGGGAATTAACTCCTTATGCCTAAGCTAACCGATGAAACAAGCGGGCGGGCGGGCAGGCGGG
385 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-GGGCGGGCGGGCGGG
* * * * * *
17558835 CACTACGCCAGCCAGAGAGATGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
449 CACTATGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* **
17558900 GTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
514 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
17558965 TTAAGCCTTCACGTGGAGTTTCATGGCAAGACGACTCGCTTTCTATTTCTCACGATTTTCGAAAC
579 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
17559030 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGTGTTTTGGCCCCAAACTTGGTAGACG
644 TTTTTACGGTTTGAGATTTTTTAAAATTTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
17559095 TGATTCTTGTATTTTTTTTGGCATGCACAAAAAACTTCAGCTAAAAAATCGAAGTGTACAAGATT
708 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
17559160 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGC
773 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
17559225 AAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGCGATAGGGG
838 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
17559284 GCCAATATAATGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCC-G-CCCCCC
1 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
*
17559347 GATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCTAACGATGCTCCGATGATAGTGCCCCGGC
66 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC---CGATGCT-CGATGAT-GTGCCCCGGC
** *
17559412 GAAGAAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCCAAT
126 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAAT
* * * * * *
17559477 CCAAACTTAGACTGGGAATGAACTTCGCATGCTTAGACTGGGAATGAACTCCGTACGCTTAAGTC
191 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * ** *
17559542 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGTCCAGAGGGGCAGGATGCGTAAGCCTGGGATC
256 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATC
* ** * * * *
17559607 GGTCGGGTCCCTCTCTGCATGCTGTCGATCCTGCTACCACAACCCTAAGTTCGGTCTGATCTTAG
321 GGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCATAACCCTCAGTCCGGTCTGATCTTAG
* * * *
17559672 ACTGGGAATGAACTCCATATGCCTAGGCCAACCGACGAAATGAGCGGGTGGGGGGGCGGGCGGGC
386 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-GGGCGGGCGGGCGGGC
* * *
17559737 ACTATGCCGGCTAGAAAAATGGGATGCGCAAGCCGTGGATCGATAGGGTTGGTAGGTGGG-TTAG
450 ACTATGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGG-TGGTAGGTGGGTTTAG
* *
17559801 GCACATCTTCATATTTCTGCCTGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCC
514 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
17559866 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACGATTTTTGAAAC
579 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
17559931 TTTTTGCAGTTTGAGATTTTTTAAAATTGTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
644 TTTTTACGGTTTGAGATTTTTTAAAATT-TTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
17559996 TGATCCTTGTAATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
708 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
17560061 TAGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGGTAGCAAACCTGT
773 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
17560126 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
838 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
17560185 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGG-CCCCT
1 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCC
* * * *
17560249 TGATTGTCGGAACCCCAATGCCGTCGGACAGGTTCTCCGA----CGATG--GTGCCCCGGCGAAG
65 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGCTCGATGATGTGCCCCGGCGAAG
* * *
17560308 AAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAA-CC-C--T----T--GG
130 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAATCCGA
17560363 TC-----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
195 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * **
17560412 CACGAAACGAGCATGCAGGCGCTCAGCTGACCAGAGGGGTGGGATGCACAAGCCGGGGATCGGTC
260 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTC
* ** * * ** * **
17560477 GGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCACCACACTC-GATCCATTCTGATCTTAGACT
325 GGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCATAACCCTCAG-TCCGGTCTGATCTTAGACT
* * * *
17560541 AGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGTGCAGGCACT
389 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-GGGCGGGCGGGCGGGCACT
* * *
17560606 -TCACCGGTCAGAAAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
453 AT-GCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* ** ** *
17560670 CATCCTCATATTTCTGCATGAAAATGTGATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTG
517 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
17560735 AGCCTCCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
582 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* *
17560800 TTACGG-TTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
647 TTACGGTTTGA-GATTTTTTAAAA-TTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * * *
17560864 ATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCATCTAAAAACTCGAAGTGTGCAAGATTTT
710 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
17560929 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAA
775 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
17560994 ACTCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGGTTTGATGAGCGATAGGGG
840 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
17561051 GCCAATATAAGAGCCAAGTACTAGCACCCATTGCACATCATATGCGCACACCCCCCGGCCCCCCC
1 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * * * *
17561116 GATCGTCGGAAGCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGT
66 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--CGATGCT-CGATGAT-GTGCCCCGGC
* * * **
17561181 GAAGAAAAATACGGCACCAGCACATGTCCGAGCCCAGCATGTGCTGCTGCAACCCTCAATCCGGT
126 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAAT
* * *
17561246 CTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
191 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * * * * * *** * *
17561311 AACTCATAAAATGAGCCTGCGGGCACTCAGTCGACCAGA-GGGAAGGGATATGCATGCCGAGGAT
256 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCA-GGATGCACAAGCCGGGGAT
* ** ** * * * * * **
17561375 CGGTCAGGTCCCCCTCTACGTGCTACCAATTCTACTGTCACAACCCT-AGGTCTAGTCTGATCTT
320 CGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCATAACCCTCA-GTCCGGTCTGATCTT
* * * *
17561439 AGACTAGGAATGGACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
384 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
17561487 TGCAGCTGCT
Statistics
Matches: 4203, Mismatches: 527, Indels: 245
0.84 0.11 0.05
Matches are distributed among these distances:
854 84 0.02
855 312 0.07
856 155 0.04
858 1 0.00
859 2 0.00
860 2 0.00
862 1 0.00
864 3 0.00
865 20 0.00
866 673 0.16
867 5 0.00
868 2 0.00
869 4 0.00
870 3 0.00
871 2 0.00
873 1 0.00
874 4 0.00
875 5 0.00
876 6 0.00
877 57 0.01
878 3 0.00
879 5 0.00
880 164 0.04
881 183 0.04
882 5 0.00
883 3 0.00
884 1 0.00
885 1 0.00
886 2 0.00
887 4 0.00
888 15 0.00
889 397 0.09
890 83 0.02
891 2 0.00
892 59 0.01
893 1 0.00
894 3 0.00
895 5 0.00
896 1 0.00
897 5 0.00
899 179 0.04
900 240 0.06
901 637 0.15
902 21 0.00
903 681 0.16
904 2 0.00
906 106 0.03
907 1 0.00
908 46 0.01
909 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGCTCGATGATGTGCCCCGGCGAAGA
AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAATCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCG
GGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCATAACCCTCAGTCCGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGCGGGCGGGCGGGCACTATG
CCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
GGTTTGAGATTTTTTAAAATTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
Found at i:17561280 original size:26 final size:26
Alignment explanation
Indices: 17561251--17561303 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17561241 CCGGTCTGAT
*
17561251 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17561277 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17561303 C
1 C
17561304 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17562341 original size:26 final size:26
Alignment explanation
Indices: 17562312--17562364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17562302 CCGGTCTGAT
*
17562312 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17562338 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17562364 C
1 C
17562365 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17563236 original size:26 final size:26
Alignment explanation
Indices: 17563207--17563259 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17563197 CCGGTTTGAT
17563207 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17563233 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17563259 C
1 C
17563260 CTAAGTCCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17563596 original size:897 final size:899
Alignment explanation
Indices: 17561436--17565016 Score: 5015
Period size: 886 Copynumber: 4.0 Consensus size: 899
17561426 CTAGTCTGAT
* *
17561436 CTTAGACTAG-GAATGGACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-AGCTGCTCA
1 CTTAGACT-GTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCA
* * * * * ** * *
17561499 GTCAGCCAAAGGGGCGGGATACGCAAGCCAGGGATCAACCAGGTCCCTTTCTATGTGCTGTCGAT
64 GTCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTATGTGCTGCCTAT
* *
17561564 CCTACTGCCGCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
17561629 AACCGACGAAACGAGCGAGCGAAAGGGCGGGCGGAC-ACTACGTCAGCCAGAGAGACGAGATGCG
194 AACCGACGAAACGA--GTG-G-ACGGGCGGGC--ACTA-TAC--CGGCCAGAGAGACGGGATGCG
* *
17561693 CAAGTCGTGGAT-GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT-
250 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATG
*
17561756 CCTATTTTTACA-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACTGC
315 CC-ATTTTTA-AGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGC
* * *
17561820 AAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAGT
378 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
*
17561885 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGACCCTTGTA-TTTTGTTGGCATGCA
443 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGACCCTTGTATTTTTGTTGGCATGCA
*
17561949 TAAAAAAATTCAGCTAAAAACTCAAAGTGTATAAGATTTTGTGACCATTTG-AAAAAGTGTCCCC
508 TAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
17562013 ATTTCAAACACTTCAGTGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGT
573 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGAGT
* *
17562078 GTGTGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCTATATAAGGGCCAAGTGCAAGCACCCATTT
638 GTGTGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCTATATAAGGGCCAAGTACAAGCACCCATTG
* * * * *
17562143 CACATCATGTGCGTACA-CCCCCCTCGGCCCTCCCGATCATCG-GAACCCTAATGCTGCCGGTTA
703 CACATCATGTGCGCACACCCCCCCTCGGCCCTCCCGATCACCGAAAACCCTAATGCCGCCGGTCA
* * * * * * *
17562206 GGTTCTACGACGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGTACCAGCACATGCCT
768 GGTTCTCCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC
* *** *
17562271 GAGCCCAGAATGTGCTGTTGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTA
833 GAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTA
17562336 TG
898 TG
* *
17562338 CTTAGACTATGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC-GT
1 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* ** * * *
17562402 CAG-CAGAGGGGCAGGATGCCCAAGCCGGGGATCAGTCGGGTCCTCCTCTGTGTGTTG-CTGATC
66 CAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTATGTGCTGCCT-ATC
** * * * * * *
17562465 CTACTATCGTAACCCTCAGTCTGATCTGATCTTATATTGGGAATGAACTCCGTATGCCTAAGCTA
130 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17562530 ACCGACGAAACGAGT-GAGCGGGCGGGCACTGTGCCGGCCAGAGAGACGGGATGCGCAAGTCGTG
195 ACCGACGAAACGAGTGGA-CGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
17562594 GATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCACATTTTTGCATGCCAATGCCATTTTTA
259 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATTTTTA
*
17562659 AGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACAACTCG
324 AGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCG
* ** *
17562724 TTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
389 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
*
17562789 GAGTTTTGGCCCCAAACTTGGTAGAAGTGACCCTTGTATTTTTGTTGGCATGCATAAAAAAATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGACCCTTGTATTTTTGTTGGCATGCATAAAAAAATTC
17562854 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
519 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
17562919 TTTATTGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-AGAGTGTGTGTTCTCG
584 TTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGTGTTCTCG
17562983 AGGTTTGATGAGGGAAAGGGGGCCTATATAAGGGCCAAGTACAAGCACCCATTGCACATCATGTG
649 AGGTTTGATGAGGGAAAGGGGGCCTATATAAGGGCCAAGTACAAGCACCCATTGCACATCATGTG
* * *
17563048 CGCACACCCCCCCGCGGCCCTCCCGATCACCGAAAACCC-AATGCCTCCGGTCAGGTTCTCCGGC
714 CGCACACCCCCCCTCGGCCCTCCCGATCACCGAAAACCCTAATGCCGCCGGTCAGGTTCTCCGAC
* * *
17563112 GATGCTCTGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATTCCCGAGCCCAGCAT
779 GATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
17563177 GTACTACCGTAACCCTCGTTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATG
844 GTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
*
17563233 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCCACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* ***
17563298 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAAT-GGTCGGGTCCCCCTCTATGTGCTGCCTATC
66 CAGCCAGAGGGGCAGGATGCGCAAGCCGGGG-ATCAACCGGGTCCCCCTCTATGTGCTGCCTATC
* * * ** * * *
17563362 CTATTGTCGTAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCA
130 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
17563427 ATCGACGAAACGAGTGGACGGGCGGGCACTATACCGGCCAGAGAGACGGGATACGCAAGCCGTGG
195 ACCGACGAAACGAGTGGACGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
17563492 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAA
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATTTTTAA
* *
17563557 GGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGATGACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGT
* * *
17563622 TTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* * *
17563687 AGTTTTGGCCCCAAACTTGGTAGATGTGACCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCT
455 AGTTTTGGCCCCAAACTTGGTAGACGTGACCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCA
17563752 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
520 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
17563817 TTAATAGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTGA
585 TTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGTGTTCTCGA
*
17563882 GGTTTGATGAGGGATA-GGGGCCTATATAAGGGCCAAGTACAAGCACCCATTGCACATCATGTGC
650 GGTTTGATGAGGGAAAGGGGGCCTATATAAGGGCCAAGTACAAGCACCCATTGCACATCATGTGC
* * * *
17563946 GCACACCCCCTCTCGGCCCTCTCGATTACC-AGAACCCTAATGCCGCCGGTCAGG-T-T----C-
715 GCACACCCCCCCTCGGCCCTCCCGATCACCGAAAACCCTAATGCCGCCGGTCAGGTTCTCCGACG
* *
17564003 -T-C-C-GACGATGGTGCCCCGACGAAGAAAAATACGGCAGCAGCACATGCCCGAGCCTAGCATG
780 ATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
17564064 TGCTATCGTAACCCTCGGTCCGGTCTGACCTTAGACTGGGAATGAACTCTGTATG
845 TGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
* * *
17564119 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGTGGGCGCTCTGT
1 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
17564184 CGGCCAGAGGAGCAGGATGCGCAAGCCGGGAATCGACCGGGTCCCCCTCTGTGTGCTAACC-ATC
66 CAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTATGTGCT-GCCTATC
** ** *
17564248 CTGTTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
130 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **
17564313 ACCGACGAAAAGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
195 ACCGACGAAACGAGTGGACGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* ** *
17564378 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCACATTTCTGCATGGAAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATTTTTAA
* * * * * *
17564443 GGCTTGTAAATTCATACAATGATCCCTTCAGCCTTCACATAAAGTTTCATGGCAAGACGACTCCT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGT
* * * * *
17564508 TTTCTATTTTTTAAGATTTTTGAAACTTTTTACGATTCGGGACTTTTTAAAATTTTTTCGGAAGG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
*
17564573 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTCGGCATGCATAAAAAAATTC
455 AGTTTTGGCCCCAAACTTGGTAGACGTGACCCTTGTATTTTTGTT-GGCATGCATAAAAAAATTC
17564637 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
519 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
17564702 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGAGGTGCGAGTTTTC
584 TTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGA-GTGTGTGTTCTC
* * * * * *
17564766 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGT
648 GAGGTTTGATGAGGGAAAGGGGGCCTATATAAGGGCCAAGTACAAGCACCCATTGCACATCATGT
* ** * * * * * *
17564831 GAGCACACCCCCCC-CGGCCC-CCTCGATTGCTG-GAACCCCAATGTCGCTGATCAGGTTCTCCG
713 GCGCACACCCCCCCTCGGCCCTCC-CGATCACCGAAAACCCTAATGCCGCCGGTCAGGTTCTCCG
* * *
17564893 ACGATGATCT-AGCGATTGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAG
777 ACGATGCTCTGA-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* ** *
17564957 CATGTGCTGCCACAACCCTCGGTCCAGT-TCGATCTTAGACTAGGAATGAACTCCGTATG
841 CATGTGCTACCGTAACCCTCGGTCCGGTCT-GATCTTAGACTAGGAATGAACTCCGTATG
17565016 C
1 C
17565017 CTAAGCCAAT
Statistics
Matches: 2416, Mismatches: 224, Indels: 83
0.89 0.08 0.03
Matches are distributed among these distances:
885 7 0.00
886 731 0.30
887 58 0.02
888 2 0.00
889 1 0.00
891 1 0.00
892 33 0.01
893 210 0.09
894 154 0.06
895 278 0.12
896 28 0.01
897 703 0.29
898 36 0.01
899 1 0.00
900 112 0.05
901 5 0.00
902 55 0.02
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTATGTGCTGCCTATCC
TACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGTGGACGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATTTTTAAG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGACCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAG
CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGTGTTCTCGAG
GTTTGATGAGGGAAAGGGGGCCTATATAAGGGCCAAGTACAAGCACCCATTGCACATCATGTGCG
CACACCCCCCCTCGGCCCTCCCGATCACCGAAAACCCTAATGCCGCCGGTCAGGTTCTCCGACGA
TGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
Found at i:17564122 original size:26 final size:26
Alignment explanation
Indices: 17564093--17564145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17564083 CCGGTCTGAC
*
17564093 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17564119 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17564145 C
1 C
17564146 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17565731 original size:26 final size:26
Alignment explanation
Indices: 17565702--17565754 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17565692 CCGGTCCGAT
17565702 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17565728 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17565754 C
1 C
17565755 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17566629 original size:26 final size:26
Alignment explanation
Indices: 17566593--17566643 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17566583 CCAATCCTAT
17566593 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
17566619 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17566644 GCATAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:17567423 original size:76 final size:80
Alignment explanation
Indices: 17567297--17567457 Score: 242
Period size: 76 Copynumber: 2.1 Consensus size: 80
17567287 GGATAGGGGG
*
17567297 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACA-CC-CC-CCGGCCCC-
1 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCTCCACCGGCCCCT
17567358 CCCAAT-GCCGGAACC
66 CCC-ATCGCCGGAACC
* *
17567373 CCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACACCCTCCACCGGCCCCT
1 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCTCCACCGGCCCCT
*
17567438 TCCATCGCCGGAACC
66 CCCATCGCCGGAACC
17567453 CCAAT
1 CCAAT
17567458 GCTGTCGGTC
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
76 46 0.61
77 2 0.03
78 2 0.03
79 10 0.13
80 16 0.21
ACGTcount: A:0.27, C:0.43, G:0.17, T:0.14
Consensus pattern (80 bp):
CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCTCCACCGGCCCCT
CCCATCGCCGGAACC
Found at i:17567604 original size:26 final size:26
Alignment explanation
Indices: 17567575--17567627 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17567565 CCGATTCGAT
*
17567575 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17567601 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17567627 C
1 C
17567628 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17568509 original size:26 final size:26
Alignment explanation
Indices: 17568480--17568532 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17568470 CCGGTCCGAT
17568480 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17568506 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17568532 C
1 C
17568533 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17569585 original size:899 final size:898
Alignment explanation
Indices: 17567373--17574734 Score: 9813
Period size: 899 Copynumber: 8.2 Consensus size: 898
17567363 TGCCGGAACC
*
17567373 CCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACACCCTCCACCGGCCCCT
1 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CC-CC-GCCCC-
* * * * * * * * * *
17567438 TCC-ATCGCCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGCTTCGGCAATAGTGCCTC
62 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCC
* * * * * *
17567502 GATGAAGAAAACTACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCGGTCC
127 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* * *
17567567 GATTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
192 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
* * * * * * * * *
17567632 GTCAACCCATGAAATGAGTGTGCGGGCGTTCAACTGACCAGAGGGGAGGGATGCGCAA-CCGGGG
257 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGG
* * * * * * * * *
17567696 ATCGATCGGGTCCCCATCTGTGTGCTACCGATTCTGCTGCCGCAACCCTCAGTCCGGTCTAATCT
322 ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCAATCT
* * *
17567761 TAGACTGAGAATGAACTCTGTATGCCTAAACCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCG
387 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G--GGCGGGCG
* **
17567826 GGCGCTACGCCGATCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCT-GGTGGGTT
448 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG-TAGGTGGGTT
** *
17567890 TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGT
512 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
17567955 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
577 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
*** * * *
17568020 AACCTTTCGTGGTTCGAGATTTTTTTAAATTTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTA
642 AACCTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* *
17568085 GACGTGATCCTTGTAATTTTGTTGGCATGCACGAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
706 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
17568150 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTATACACTTTAATCGCTACTGGCAGGAAAC
771 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
17568215 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAG
836 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG-G
* * *
17568279 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCACACACCTCCCCCCGGCCCCC
1 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCCGCCCCCC
* * * * **
17568344 CGATCGTCGGAACCCCAATGCAGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGCACCCCGA
64 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGA
* * * * * *
17568409 CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATTTGCTGCCACAACCCTTGGTCCGG
129 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
17568474 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
194 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
** * * * **
17568539 CAACCCATAAAACAAGCGTGCAGGCGCTCAGCCGGCCAGAAGGGCGGGATGTGCAAGCTAGGGAT
259 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGAT
** * * * * ** *
17568604 CGACCGGGTCCCCCTCTGTGTGCTGCCAATCTTGCTACCGCAACCCTCGGTCCGGTCTGATCTTG
324 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCAATCTTA
* * * * * * * *
17568669 GATTGGAAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAACGGACGGGCAGGCGAGCACT
389 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACT
* *
17568734 ACGTCGGCC-GAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
454 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
17568798 ATCTTCATATTTCTGCATGCCACTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
519 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
17568863 GCCTTCACTTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTAAAACCTTT
584 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTT
* * *
17568928 TGCGGTTCGGGATTTTTAAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
649 TACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
17568993 CCTT-TCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAGAA-TGCGAAGTGTACAAGATTTT
714 CCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT-CGAAGTGTACAAGATTTT
* * * *
17569056 GTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACATTAAAGGCTGCTGGCAGCAAACCTGTAA
777 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
17569121 AATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGG
842 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGG
*
17569179 CCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCC
1 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-CCCCCCC
* * * *
17569244 GATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATACTTCGACGATGGTGCTCCGAC
65 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGAC
* * * *
17569309 GAGGAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAGCCACAACCCTCGGTCTGGT
130 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* * * * *
17569374 CCGATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTGGTAATGAACTGC-ATATGCCTATGT
195 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CTGTATGCCTAAGT
* * * * * * *
17569438 CAACCTACGAAACAAGCGTGCAGGCGCTCAACCGACCAGAGGGGCGGGATGCACAAGCCGGGGAT
259 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGAT
* ** *
17569503 CGGTTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCTGGTCCAATCTTA
324 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCAATCTTA
* * * * *
17569568 GACTGGGAATCAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCTGACAGGCGGGCACT
389 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACT
* * *
17569633 ACGCCAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCAC
454 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
17569698 ACCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAATTTCATACAATGG-CCCTTAA
519 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
17569762 GCCTTCACGTGAAGTTTCATGGCAAGA-GAACTCG-TTT-T-TTTTTCACGATTTTTG-AACTTT
584 GCCTTCACGTGAAGTTTCATGGCAAGACG-ACTCGTTTTCTATTTTTCACGATTTTTGAAACCTT
* ** * * *
17569822 TTACGGCTCAAGATTTTTTAAAATTTCTTCGAAAGGAGTTTTGGCCTCATACTTGGTAGACGTGG
648 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT-G
* *
17569887 ATCCTTGTATTTTTGCTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
712 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * * *
17569952 GTAACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACCGGTAGCAAACCTATAA
777 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
17570017 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
842 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG
* * *
17570075 CCAGTATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCCTCCGACCCCCCC
1 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-CCCCCCC
* *** * *
17570139 GATCGCGGGAACCCCAATGCCGCCGGTCAGGTTCTTTGGCGATGCTCCGACAATGGTGCCTCGAC
65 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGAC
* *
17570204 GAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
130 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* * * *
17570269 CCGGTCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTC
195 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
* *
17570334 AACCTACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATT
260 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATC
* ** * * * * * **
17570399 GGTTGGGTCCCCCTCTGCGTATTGCCAATCCTGTTACCACAACCCTCGATCTGATCTGATCTTAG
325 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCAATCTTAG
*
17570464 ACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTA
390 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTA
* ** * * **
17570529 CACCGGTTAGAGAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGCATTTAGGCACA
455 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
17570594 TCTTCATATTTTTACATGCCAATACCATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAG
520 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
17570659 CCTTCACGTCATGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTT
585 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTT
* * * *
17570723 AGCAGTTCGGGATTTTTTAAAATTTTTTCGAAAGTATTTTTGGCCCCAAACTTGGTAGACATGAT
650 A-CGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
17570788 CCTTATATTTTTGTTGGCTTGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGT
714 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
17570853 GACAATTTGAAAAAAATGTCACCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAA
779 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
17570918 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGG
844 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGG
*
17570974 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCG
1 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCG
* * *
17571039 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGATGATGGTGCCCCGACA
66 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACG
* *
17571104 AAGCAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
131 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
** *
17571169 CGATCTTAGACTACGAATGAACTCCGTATGTTTAGACTGGGAATGAATTCCGTATGTTTAGACTG
196 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA---C-------T---CT-
* * * * *
17571234 GGAATAAACTCTTTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGTCGGCCGGAG
247 -G-----------TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAA
* * * * *
17571299 GGGCGGGATACGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCCAC
300 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCAC
* * * ** *
17571364 AACCCTCAGTCCGGTTCAATCTTAGATTGGGAATTCACTCCGTATGCCTAAGCCAACCGACGAGA
365 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * **
17571429 CGACCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTATGGATCGAT
430 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
17571494 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
495 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
*
17571559 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTA
560 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
17571624 TTTTTCACGATTTTTGAAGCTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
625 TTTTTCACGATTTTTGAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
*
17571689 GG-CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
690 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
17571753 AACTCAAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
755 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
17571818 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTCAAGGTTTG
820 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
17571883 ATGAGGGATAGAGG
885 ATGAGGGATAGGGG
* *
17571897 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCACCCCTGGCCCCC
1 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCC-GCCCCCC
* * *
17571962 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTC-GACGATGCTCCGACGATGGTGCCCC-
64 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGATGCTCCGACGATGGTGCCCCG
* * * * ***
17572025 AGTGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGTATATGCTAATGCAACCCTCGGTCT
128 A-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* * * *
17572090 GATCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAGCTCCGTATGCCTAA
192 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
* * * * * *
17572155 ATCAACCCACGAAACGATCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGG
257 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGG
* * ** * **
17572220 ATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCT
322 ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCAATCT
* * * *
17572285 TAGACTGGGAATGAACTCCGCATGCGTAAGCCAACCGACGAAACGA-CTGGGCGGGTGAGCGGGC
387 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGGCGGGCGGGCGGGC
* * * *
17572349 ACTACGCTGGCCAGAGAGACGGGAAGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
451 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
17572414 CACATCTTCATATTTCTACATGCCAATGCCATTTTTGATGGCTTGTAAATTCATACAATGGTCCC
516 CACATCTTCATATTTCTACATGCCAATGCCATTTTT-ATGGCTTGTAAATTCATACAATGGTCCC
* * *
17572479 TTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGACTTTTGAAAC
580 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
17572544 TTTTTACGGTTCGAGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACA
645 CTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
17572608 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
710 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
17572673 TTGAGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
775 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
17572738 AAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTCAAGGTTTGATGAGGGATAGAGG
840 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
**
17572797 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGGCCCCCG
1 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCG
* * * * * **
17572861 ATTGCCAGAACCTCAATGCGGCCGGTCAGGTTCTTC-GACGATGCTCCGACGATGGTGCCCCGGT
66 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGATGCTCCGACGATGGTGCCCCGAC
** * * * *
17572925 GAAGAAAAATGCGGCAGTAACACATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGT
130 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* * *
17572990 CCGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
195 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
* * * * * * * *
17573055 AACCCACGAAATGAGCGTGTGTGCACTTAGCCGGCCAGAAGAGCGGGATGCGCAAGTCGGGGATT
260 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * *
17573120 GGCCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACAGCCCTCAGTCCGGTCCGATCTTAG
325 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCAATCTTAG
* * * * *
17573185 ATTGGGAATGAACTCCGTATGCCTAACCCCACCGACGAAACGAGTGGGCAGGCGGGCGAAAGGGC
390 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC----GGGC
* * *
17573250 CCTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
451 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * ***
17573315 CACATCTTCATATTTCTACGTGTCAATGCCATTTTTGCAGCTTGTAAATTCATACAATGGTCCCT
516 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* ** *
17573380 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
581 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACC
* * * *
17573445 TTTTAAGGTTCAGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
646 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
17573510 GATCCTTGTATTTTTGTTGGCATGCATAAGAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTT
711 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * *
17573575 TGTGGCCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCAGTA
776 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
17573640 AAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATGGGGGG
841 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGG
17573699 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCC
1 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-C-GCCCCCC
* * * *
17573764 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCAACGATGCTCCGACGATGGTGCCCCGG
64 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGA
* * * * * *
17573829 TGAAGTAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCACGGTCCT-
129 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTG
* * * * * *
17573893 GTCTGATCTTAGACTGGCAATGAACTCTC-TCTACTTAGGCTGGGAATAAACTCTGTATGCCTAA
193 GTCCGATCTTAGACTGGGAATGAACTC-CGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
* * * * * * * *
17573957 GTCAACCGACGAAACGACCGTGGGGGCGCTCAGCCAGCCAAAAGGGCAGG-TCGTGCAAGCTGGG
257 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGAT-GCGCAAGCCGGG
* * *
17574021 GA----TC-GG-----C-C-G-G-G-T-CCGGTCCTACTACCACAACCCTTGGTCCGGTCCAATC
321 GATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCAATC
* *
17574070 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGGCGGGC
386 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGCGGGCGGGC
* * *
17574135 GGACACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCCATAGGGTGGTAGGTGGGTT
447 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
17574200 TAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGT
512 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* **
17574265 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
577 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
17574330 AACCTTTTGA-GGTTCAGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTA
642 AACCTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
17574394 GACATGATCCTTTTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGTGTACAA
706 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
17574459 GATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAAC
771 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
17574524 CTGTAAAGTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
836 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG
* *
17574588 CCAATATAAGGGCCAAGTACTACCACCCATCGCACATCATGTGCGCACACCCCCTCCGCCCCCCC
1 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGCCCCCCC
* * ** * * **
17574653 GATCGTCGGAACCCCAATGCCCCCGGTCAGGTTCTCTGGCAATGCTCGGGTGATGGTGCCCCGAC
65 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGAC
* *
17574718 GAAAAAAAATACGGCAC
130 GAAGAAAAATGCGGCAC
17574735 ATCCCTCTGT
Statistics
Matches: 5726, Mismatches: 649, Indels: 180
0.87 0.10 0.03
Matches are distributed among these distances:
888 75 0.01
889 536 0.09
890 5 0.00
891 1 0.00
892 1 0.00
893 16 0.00
894 2 0.00
895 521 0.09
896 266 0.05
897 340 0.06
898 17 0.00
899 1066 0.19
900 933 0.16
901 468 0.08
902 70 0.01
903 5 0.00
904 5 0.00
905 439 0.08
906 152 0.03
907 3 0.00
908 2 0.00
909 1 0.00
910 1 0.00
912 2 0.00
914 1 0.00
915 1 0.00
922 1 0.00
923 54 0.01
924 193 0.03
925 544 0.10
926 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCG
ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACG
AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCG
GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCAATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTAC
GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTA
CGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
Found at i:17570310 original size:26 final size:26
Alignment explanation
Indices: 17570274--17570326 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17570264 CTGGTCCGGT
17570274 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17570300 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17570326 C
1 C
17570327 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17571233 original size:26 final size:26
Alignment explanation
Indices: 17571174--17571244 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 26
17571164 TGGTCCGATC
**
17571174 TTAGACTACGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
17571200 TTAGACTGGGAATGAATTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
17571226 TTAGACTGGGAATAAACTC
1 TTAGACTGGGAATGAACTC
17571245 TTTATGCCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:17571620 original size:925 final size:912
Alignment explanation
Indices: 17564961--17574734 Score: 10766
Period size: 900 Copynumber: 10.8 Consensus size: 912
17564951 GCCCAGCATG
* * *
17564961 TGCTGCCACAACCCTCGGTCCAGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * ** * * *
17565026 TTGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGTCAACAAAAGAGACGGGATGTG-AATGCC
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA-GCC
* **
17565090 GTGGATTGATAGGGTGGTAGGTGGGTTTAGGTTCATCTTCATATTTCTACATGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
17565155 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
17565220 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG-GTTCGTGATTTTTTAAAATTTTTTTG
260 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-GAGTTCGGGATTTTTTAAAATTTTTTCG
* * * * * ** * **
17565284 CAAGGAGTTTTGGCCCTAACCTTGGTAGGCGTGATTGTTGTATTTTTGTTGGCAGGCATGAAAAA
324 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
17565349 ATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCCTTTCAG
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
17565414 ACACTTTAATTGCTATTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGT-TGAGTT
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
17565478 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCACACATCA
519 CTCGAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** ** * *
17565543 TGTGTGCACAACCCCCGGGCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTACGACG
583 TGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG-CG
* * * ** *
17565608 ATGCTCTGGCGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
647 ATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* * *
17565673 TGTTG-TCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTC-------C------G
712 TGCTGCT-GCAACCCTCGGTCTGGTCCGATCTTAGACTACGAATGAACTCGGTTAGACTGGAATG
* *
17565724 ---TATGCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
776 ATCTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * ** *
17565786 GCTTTA-TCGGCCAGAGGGGCGAGATGCGCAAG-TCGAGGATCGACCGGGTCCCCCTCTGTGTGC
841 GC-TCAGCCGGCCAGAAGGGCGGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGCGTGC
*
17565849 TGCCGATCC
904 TGCCAATCC
* * * * *
17565858 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAACGAAGTTCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17565923 CCGATGAAACGAGCAGGCGGACGGCTGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGC-G--GGC-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
17565988 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTTTGCATGCCGATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
17566053 ATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
17566118 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-GCGGTTCGAGATTTTTTAAACTTTTT
257 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAG-AGTTCGGGATTTTTTAAAATTTTT
*
17566182 TCGGAAGGAGTTTTGGCCCAAAACTTGGTAGACATGATCCTTGTA-TTTTGTTGGCATGCACAAA
321 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
*
17566246 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
17566311 CAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGAGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** *
17566376 GTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACA
516 GTTCTCGAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
17566441 TCATGTGCGCACAACCCCCGGCCCCCCTGATCGTCGAAACCCCAATGTCGCCGGTCAGGTTC-TC
580 TCATGTGCGCAC-ACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTC
* * *** * * *
17566505 -C---G----G-CGTTGGTGCCCAGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGC
644 GCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* * *** * **
17566561 ATGTGCTG-TCGCAACCTTTGGTCCAATCCTATCTTAGACTGGGAATGAACTC-------C--G-
709 ATGTGCTGCT-GCAACCCTCGGTCTGGTCCGATCTTAGACTACGAATGAACTCGGTTAGACTGGA
* * *
17566615 -T-A--TA--CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGGGTGCG
773 ATGATCTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * ** *
17566674 GGCGCTCAGTCGGCTAGAGGGGCAGGATACGCAAGTTGGGGATCAATCGGGTCCCCCTCTGTGTG
838 GGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTG
*
17566739 CTGTCAATCC
903 CTGCCAATCC
* ** * * * ** *
17566749 TGCTTCCGTAACCCTCGGTCTGG-TCCATTCTTAGACCAGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGCCACAACCCTCAGTCCGGTTCGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * * *
17566813 ACCGACGAAACAAGCGAGTGGGCGGGCAGGCAGGCGCTACACTGACCAAAGAGACGGGATACGGA
65 ACCGACG--A-AA-CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * * *
17566878 AGCCGTAGATCGATAGGGTGGTTGGTGGGTTTATGCACATCTTCATATTTTTGCGTGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
17566943 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
17567008 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-GAGGTTCGGTATTTTTTAAACTTTT
256 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGA-GTTCGGGATTTTTTAAAATTTT
** * * ** * *
17567072 TTCAAAAGGAGTTTTAGCCCAAAACAAGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
320 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
*
17567137 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
385 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
17567202 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
450 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
17567267 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
515 AGTTCTCGAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *** * *
17567332 ATCATGTGTGCACACCCCCCGGCCCCCCCAAT-GCCGGAACCCCAATATAAG--GGCCAAGTATC
579 ATCATGTGCGCACACCCCCC-GCCCCCCCGATCGTCGGAACCCCAAT-GCCGCCGGTCAGGT-TC
** * * * * * ****** * * ** *
17567394 AGCACCCATCGC-AC-ATC-AT-GTG-CGC-A-CACCCTCCA-CCGGCCCCTTC-CATCGCCGGA
641 TTC-GCGAT-GCTCCGA-CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACAT-GCCCG-
* * * ** * * **
17567450 ACCCCAATGC-TGTCGGTCAGGTTCTCCGGTGATGCTTCGG-CAATAGTGCCTCGAT-GAAGAAA
701 AGCCC-A-GCATGT--G-C---TGCT---G-CAACCCTCGGTC--T-G-GTC-CGATCTTAG---
* * * *
17567512 ACTACGGCACCAGCACATGCCCAAGCCCAGCATGT-G-CTGTCGCAACCCTCGGTCCGATTCGAT
746 ACT-----A-C-G-A-ATG---AA-CTC-G-GT-TAGACTG--G-AA---T-GAT-CTA-T-G--
* *
17567575 CTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
783 CTTAGACTGGGAATAAACT------------------------C-C-GTATGCCTAAGTCAACCC
* * * * * * * * * * *
17567640 ATGAAATGAGTGTGCGGGCGTTCAACTGACCAGAGGGGAGGGATGCGCAA-CCGGGGATCGATCG
822 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCTGGGGATCGGTCG
* * * * *
17567704 GGTCCCCATCTGTGTGCTACCGATTC
887 GGTCCCCCTCTGCGTGCTGCCAATCC
* * * * *
17567730 TGCTGCCGCAACCCTCAGTCCGG-TCTAATCTTAGACTGAGAATGAACTCTGTATGCCTAAACCA
1 TGCTGCCACAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* **
17567794 ACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCGCTACGCCGATCAGAGAGACGGGATGCGCA
65 ACCGACGAAACGAGCGGGC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
**
17567859 AGCCGTGGATCGATAGGGTGGCT-GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
126 AGCCGTGGATCGATAGGGTGG-TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
17567923 CATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
190 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
17567988 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTCGT-G-GTTCGAGATTTTTTTAAATT
255 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTT-TTAGAGTTCGGGA-TTTTTTAAAAT
* * * *
17568051 TTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCA
317 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
*
17568116 CGAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
382 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
17568181 ATTTTATACACTTTAATCGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
447 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
17568246 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCG
512 GTGAGTTCTCGAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
17568311 CACATCCTGTGCACACACCTCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCAGCCGGTCAGG
576 CACATCATGTGCGCACA---CCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * ** * * *
17568376 TTCTCCGGTGATGCTCCGACGATGGCACCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGA
638 TTCTTC-GCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGA
* * ** * * **
17568441 GCCTAGCATTTGCTGCCACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTC------
702 GCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTACGAATGAACTCGGTTAG
* * ** *
17568500 -C------G---TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACAAG
767 ACTGGAATGATCTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * **
17568555 CGTGCAGGCGCTCAGCCGGCCAGAAGGGCGGGATGTGCAAGCTAGGGATCGACCGGGTCCCCCTC
832 CGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTC
* *
17568620 TGTGTGCTGCCAATCT
897 TGCGTGCTGCCAATCC
* * * * * *
17568636 TGCTACCGCAACCCTCGGTCCGG-TCTGATCTTGGATTGGAAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCACAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
17568700 ATCGATGAAACGAACGGACGGGCAGGCGAGCACTACGTCGGCC-GAGAGACGGGATGCGTAAGCC
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
17568764 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCACTGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* *
17568829 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTAATGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
17568894 TCGTTTTCTATTTTTCACTATTTTTAAAACCTTTT-GCGGTTCGGGATTTTTAAAAATTTTTTCG
260 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAG-AGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
17568958 AAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-TCATTTTTTTTGGCATGCACAAAAA
324 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT-ATTTTTGTTGGCATGCACAAAAA
* *
17569022 AATTCAGCTAAGAA-TGCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTC
388 AATTCAGCTAAAAACT-CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
17569086 AGACACATTAAAGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
17569151 TTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACAT
517 TTCTCGAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** *
17569216 CATGTGCGCACACCCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
581 CATGTGCGCACA-CCCCCCG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTC
* * * * * * *
17569281 AGCGATACTTCGACGATGGTGCTCCGACGAGGAAAAAAGCGGCACCAGCACATGCCCGAGCCCAG
644 -GCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* ** **
17569346 CATGTGCAGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA--C---T---CT-G-
708 CATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTACGAATGAACTCGGTTAGACTGGA
* * * * * * * *
17569401 -T-A-C---GCTTAGACTGGTAATGAACTGCATATGCCTATGTCAACCTACGAAACAAGCGTGCA
773 ATGATCTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * *
17569460 GGCGCTCAACCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTTGGGTCCCCCTCTGCGTG
838 GGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTG
*
17569525 CTGCCGATCC
903 CTGCCAATCC
* ** * * * * * *
17569535 TGCTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATCAACTCCGTATACCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17569600 CCGACGAAACGAGCGGGCTGACAGGCGGGCACTACGCCAGCCAGAGAGATGGGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
17569665 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTCCATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
17569730 TATGGCTTGTAATTTCATACAATGG-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-GAAC
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG-AC
* ** *
17569793 TCG-TTT-T-TTTTTCACGATTTTTG-AACTTTTTACG-GCTCAAGATTTTTTAAAATTTCTTCG
260 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-GAGTTCGGGATTTTTTAAAATTTTTTCG
* * * * * *
17569853 AAAGGAGTTTTGGCCTCATACTTGGTAGACGTGGATCCTTGTATTTTTGCTGGCATGCACAAAAC
324 GAAGGAGTTTTGGCCCCAAACTTGGTAGACAT-GATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
17569918 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCACTTCA
388 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
17569983 GACACTTTAATGGCTACCGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
17570048 TCTTGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATTGCACATC
518 TCTCGAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
17570113 ATGTGCGCACACCCTCCGACCCCCCCGATCG-CGGGAACCCCAATGCCGCCGGTCAGGTTCTTTG
582 ATGTGCGCACACCCCCCG-CCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTC-TTC
* * * *
17570177 GCGATGCTCCGACAATGGTGCCTCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGC
644 GCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* * **
17570242 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGGTCTTAGACTGGGAATGAACTC-------C-----
709 ATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTACGAATGAACTCGGTTAGACTGGAA
* * *
17570295 --A--TATGCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGG
774 TGATCTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * **
17570356 GCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATTGGTTGGGTCCCCCTCTGCGTAT
839 GCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGC
17570421 TGCCAATCC
904 TGCCAATCC
* * * *
17570430 TGTTACCACAACCCTC-GAT-CTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
1 TGCTGCCACAACCCTCAG-TCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** * *
17570493 AACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACACCGGTTAGAGAGACGAGATGCACAAGC
64 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
** * *
17570558 CGTGGATCGATAGGGTGGTAGGTGCATTTAGGCACATCTTCATATTTTTACATGCCAATACCATT
129 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * * *
17570623 TTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTCATGTTTCATGGCAAGATGA
194 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
17570688 CTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTAGCAGTTCGGGATTTTTTAAAATTTTTTC
259 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAG-AGTTCGGGATTTTTTAAAATTTTTTC
* * * * *
17570752 GAAAGTATTTTTGGCCCCAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCTTGCACAAAAA
323 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
17570817 AATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAATGTCACCATTTCA
388 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
17570882 GACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
17570947 TCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
518 TCTCGAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
17571012 ATGTGCGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAG
582 ATGTGCGCACACCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTC-G
* ** * * *
17571077 CGATGCTCCGATGATGGTGCCCCGACAAAGCAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
645 CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
*
17571142 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTACGAATGAACTCCGTATGTTTAGACT
710 TGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTACGAATGAACT-CG---G-TTAGACT
* **
17571207 GGGAATGAATTCCGTATGTTTAGACTGGGAATAAACTCTTTATGCCTAAGTCAACCCACGAAACG
770 -GGAATG-A-T-C-TATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * *
17571272 AGCATACGGGCGCTCAGTCGGCCGGAGGGGCGGGATACGCAAGCTGGGGATCGGTCGGGTCCCCC
830 AGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCC
* * *
17571337 TCTACGTGCTGCCGATCT
895 TCTGCGTGCTGCCAATCC
* * **
17571355 TGCTGCCACAACCCTCAGTCCGGTTCAATCTTAGATTGGGAATTCACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * **
17571420 CCGACGAGACGACCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
17571485 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
17571550 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
17571615 CGTTTTCTATTTTTCACGATTTTTGAAGCTTTTTATG-GTTTGGGATTTTTTAAAATTTTTTCGG
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-GAGTTCGGGATTTTTTAAAATTTTTTCGG
**
17571679 AAGGAGTTTTGG-CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
17571743 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGA
390 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
17571808 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTC
455 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
17571873 TCAAGGTTTGATGAGGGATAGAGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
520 TCGAGGTTTGATGAGGGATGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
17571938 TGCGCACACCCACCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGAC
585 TGCGCACA-CC-CCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG-C
* * *
17572003 GATGCTCCGACGATGGTGCCCC-AGTGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGTA
646 GATGCTCCGACGATGGTGCCCCGA-TGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
* ** * ** *
17572067 TATGCTAATGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAAAGAACTC-------C------
710 TGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTACGAATGAACTCGGTTAGACTGGAAT
* * * * *
17572119 G---TATGCTTAGACTGGGAATGAGCTCCGTATGCCTAAATCAACCCACGAAACGATCGTACGGG
775 GATCTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * *
17572181 CGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG-TCGGGGATCGGTCGGGTCCCCCTCTGTGTGC
840 CGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGCGTGC
17572245 TGCCAATCC
904 TGCCAATCC
* * * * *
17572254 TGCTGTCGCAACCCTCGGTCCGG-TCTGATCTTAGACTGGGAATGAACTCCGCATGCGTAAGCCA
1 TGCTGCCACAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
17572318 ACCGACGAAACGA-CTGGGCGGGTGAGCGGGCACTACGCTGGCCAGAGAGACGGGAAGCACAAGC
65 ACCGACGAAACGAGC-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
17572382 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
129 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
*
17572447 TTTGATGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACG
194 TTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
17572512 ACTCATTTTCTATTTTTCACGACTTTTGAAACTTTTTACG-GTTCGAGATTTTTTAAAATTCTTT
258 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-GAGTTCGGGATTTTTTAAAATTTTTT
17572576 CGGAAGGAGTTTTGG-CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
322 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
17572640 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTATCCCCATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
17572705 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
17572770 TTCTCAAGGTTTGATGAGGGATAGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
517 TTCTCGAGGTTTGATGAGGGATGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * * * * *
17572835 ATGTGCGCACACCCCCCGGGCCCCCGATTGCCAGAACCTCAATGCGGCCGGTCAGGTTCTTCGAC
582 ATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG-C
* ** *
17572900 GATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCAGTAACACATGCTCGAGCCCAGCAT
646 GATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT
* **
17572965 GTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA-T---TT---C------G
711 GTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTACGAATGAACTCGGTTAGACTGGAATG
* * * *
17573017 ---TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGTGC
776 ATCTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * *
17573079 ACTTAGCCGGCCAGAAGAGCGGGATGCGCAAG-TCGGGGATTGGCCGGGTCCCCCTCTGCATGCT
841 GCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* *
17573143 GTCGATCC
905 GCCAATCC
* * * * * *
17573151 TACTGCCACAGCCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAACCCCA
1 TGCTGCCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17573216 CCGACGAAACGAGTGGGCAGGCGGGCGAAAGGGCCCTACGCCGACCAAAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
17573281 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGTCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*** *
17573346 TTTTTGCAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * *
17573411 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA-AGGTTCAGAATTTTTTAAAATTTTT
257 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGA-GTTCGGGATTTTTTAAAATTTTT
* * *
17573475 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAG
321 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
17573540 AAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCTTTTGAAAAAAGTGTCCCCATTT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
17573605 CAGACACTTTAATGGCTACTGGTAGCAAACCAGTAAAATCTCATATGCTCTTTAAGGGGGTGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
17573670 GTTCTCGAGGTTTGATAAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
516 GTTCTCGAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
17573735 TCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
580 TCATGTGCGCACA-CCCCC-C-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
17573800 TCAACGATGCTCCGACGATGGTGCCCCGGTGAAGTAAAATGTGGCACCAACACATGCCCGAGCCC
642 TC-GCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* * *
17573865 AGCATGTGCTGCTGCAACCCACGGTCCT-GTCTGATCTTAGACT-GGCAATGAACTC---T---C
706 AGCATGTGCTGCTGCAACCCTCGGT-CTGGTCCGATCTTAGACTACG-AATGAACTCGGTTAGAC
* * * *
17573922 --------TCTA--CTTAGGCTGGGAATAAACTCTGTATGCCTAAGTCAACCGACGAAACGACCG
769 TGGAATGATCTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * *
17573977 TGGGGGCGCTCAGCCAGCCAAAAGGGCAGG-TCGTGCAAGCTGGGGATCGGCCGGG------TC-
834 TGCGGGCGCTCAGCCGGCCAGAAGGGCGGGAT-GCGCAAGCTGGGGATCGGTCGGGTCCCCCTCT
17574034 -C--G--G----TCC
898 GCGTGCTGCCAATCC
* * ** * * *
17574040 TACTACCACAACCCTTGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17574105 CCGATGAAACGAGCGAGCGGGCGGGCGGGCGGACACTACGCCGGCCAGAGAGACGGGATACGCAA
66 CCGACG-AA--A-CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
17574170 GCCGTGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
17574235 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * *
17574300 GACTCGTTTTCTATTTTTCACGATTTTCAAAACCTTTT-GAGGTTCAGGATTTTTTAAAATTTTT
257 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGA-GTTCGGGATTTTTTAAAATTTTT
* * *
17574364 TCGGATGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCATAAA
321 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
17574429 AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17574494 CAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAGTCTCAAATGCTCTTTAAGGGGGTGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
17574559 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTACCACCCATCGCACA
516 GTTCTCGAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
17574624 TCATGTGCGCACACCCCCTCCGCCCCCCCGATCGTCGGAACCCCAATGCCCCCGGTCAGGTTCTC
580 TCATGTGCGCACA-CCCC-CCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-
* * * ** * * *
17574689 TGGCAATGCTCGGGTGATGGTGCCCCGACGAAAAAAAATACGGCAC
642 TCGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCAC
17574735 ATCCCTCTGT
Statistics
Matches: 7706, Mismatches: 907, Indels: 537
0.84 0.10 0.06
Matches are distributed among these distances:
888 75 0.01
889 537 0.07
890 13 0.00
891 529 0.07
892 233 0.03
893 20 0.00
894 8 0.00
895 516 0.07
896 281 0.04
897 416 0.05
898 30 0.00
899 1069 0.14
900 1074 0.14
901 781 0.10
902 111 0.01
903 5 0.00
904 6 0.00
905 281 0.04
906 108 0.01
907 5 0.00
908 6 0.00
911 4 0.00
912 3 0.00
913 1 0.00
914 3 0.00
920 1 0.00
921 1 0.00
922 1 0.00
923 54 0.01
924 193 0.03
925 545 0.07
926 12 0.00
927 3 0.00
931 18 0.00
933 1 0.00
934 1 0.00
935 2 0.00
939 2 0.00
945 1 0.00
950 1 0.00
952 1 0.00
956 18 0.00
960 2 0.00
961 2 0.00
964 3 0.00
965 1 0.00
966 1 0.00
973 3 0.00
975 4 0.00
976 4 0.00
977 9 0.00
978 2 0.00
979 7 0.00
980 2 0.00
981 286 0.04
982 329 0.04
983 4 0.00
984 13 0.00
985 26 0.00
986 10 0.00
987 2 0.00
988 4 0.00
989 4 0.00
990 5 0.00
991 10 0.00
992 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (912 bp):
TGCTGCCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGAGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGCGATGC
TCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT
GCTGCAACCCTCGGTCTGGTCCGATCTTAGACTACGAATGAACTCGGTTAGACTGGAATGATCTA
TGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGGCCAGAAGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAAT
CC
Found at i:17572127 original size:26 final size:26
Alignment explanation
Indices: 17572098--17572150 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17572088 CTGATCCGAT
17572098 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
17572124 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17572150 C
1 C
17572151 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:17573031 original size:26 final size:26
Alignment explanation
Indices: 17572995--17573047 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17572985 CCGGTCCGAT
* *
17572995 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17573021 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17573047 C
1 C
17573048 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17575518 original size:26 final size:26
Alignment explanation
Indices: 17575489--17575542 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
17575479 GGTCCAATCT
17575489 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* *
17575515 TAGACTTGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
17575541 TA
1 TA
17575543 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:17575803 original size:158 final size:158
Alignment explanation
Indices: 17575515--17576196 Score: 844
Period size: 158 Copynumber: 4.3 Consensus size: 158
17575505 TCCATATGCC
* * * * * *
17575515 TAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCTG
1 TAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCG
* * * **
17575580 GCCAGAGGGTCGGGATGCGTAAGTCGAGGATCAGTCGAGTTCCCTCTGCGCATTGCCAATCCTGT
66 GCCAGAGGGTCAGGATGCGTAAGTCGAGGATCAGTCGGGTCCCCTCTGCGCGCTGCCAATCCTGT
* *
17575645 TGCCGTAACCCTTGGTCCGGTCCGATCT
131 TGCCGTAACCCTCGGTCCGGTCCCATCT
* * *
17575673 TAGACTGGGTATTAACTCCGTATGGCTTAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCG
1 TAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCG
* *
17575738 GCCAGATGGTCGGGATGCGTAAGTCGAGGATCAGTCGGGTCCCCTCTGCGCGCTGCCAATCCTGT
66 GCCAGAGGGTCAGGATGCGTAAGTCGAGGATCAGTCGGGTCCCCTCTGCGCGCTGCCAATCCTGT
17575803 TGCCGTAACCCTCGGTCCGGTCCCATCT
131 TGCCGTAACCCTCGGTCCGGTCCCATCT
* * ** * *
17575831 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCTCTCAGCCG
1 TAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCG
* * *
17575896 GCCAGAAGGTCAGGATGCATAAGTCGAGGATCAGTCGGGTCCCCTCTGCACGCTGCCAATCCTGT
66 GCCAGAGGGTCAGGATGCGTAAGTCGAGGATCAGTCGGGTCCCCTCTGCGCGCTGCCAATCCTGT
* * * **
17575961 TGCCGCAACCCTCAGTTCGGTCTGATCT
131 TGCCGTAACCCTCGGTCCGGTCCCATCT
* *
17575989 TAGATTGGGAATTAACTACGTATAG-CTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCC
1 TAGACTGGGAATTAACTCCGTAT-GCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCC
* * * * * * * * * *** *
17576053 GGCTAGAGGGGCAGAATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCCATCGATCCT
65 GGCCAGAGGGTCAGGATGCGTAAGTCGAGGATCAGTCGGGT-CCCCTCTGCGCGCTGCCAATCCT
*
17576118 GTTACCGTAACCCTCGGTCCGGTCCCATCT
129 GTTGCCGTAACCCTCGGTCCGGTCCCATCT
* * * * ** *
17576148 TAGACTAGGAATGAACTCTGTATACCTAACCCAACCGACAAAACGAGCG
1 TAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCG
17576197 GGCAAGCGGG
Statistics
Matches: 448, Mismatches: 73, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
158 367 0.82
159 81 0.18
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
TAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCG
GCCAGAGGGTCAGGATGCGTAAGTCGAGGATCAGTCGGGTCCCCTCTGCGCGCTGCCAATCCTGT
TGCCGTAACCCTCGGTCCGGTCCCATCT
Found at i:17576095 original size:316 final size:317
Alignment explanation
Indices: 17575515--17576196 Score: 936
Period size: 316 Copynumber: 2.2 Consensus size: 317
17575505 TCCATATGCC
* * *
17575515 TAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCTG
1 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGTTCAGCCG
* * * * * *
17575580 GCCAGAGGGTCGGGATGCGTAAGTCGAGGATCAGTCGAGTTCCCTCTGCGCATTGCCAATCCTGT
66 GCCAGAAGGTCAGGATGCATAAGTCGAGGATCAGTCGAGTCCCCTCTGCACACTGCCAATCCTGT
* ** * * * *
17575645 TGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGTATTAACTCCGTATGGCTTAGTCAACCC
131 TGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATTAACTACGTATAGCTAAGTCAACCC
* * * * * *
17575710 ACAAAACGAGCGTGCAGGCGCTCAGCCGGCCAGATGGTCGGGATGCGTAAGTCGAGGATCAGTCG
196 ACAAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGAATGCGCAAGCCGAGGATCAGTCG
** *
17575775 GGT-CCCCTCTGCGCGCTGCCAATCCTGTTGCCGTAACCCTCGGTCCGGTCCCATCT
261 GGTCCCCCTCTGCGCGCCACCAATCCTGTTACCGTAACCCTCGGTCCGGTCCCATCT
* *
17575831 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGC-TCTCAGCC
1 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGT-TCAGCC
* *
17575895 GGCCAGAAGGTCAGGATGCATAAGTCGAGGATCAGTCGGGTCCCCTCTGCACGCTGCCAATCCTG
65 GGCCAGAAGGTCAGGATGCATAAGTCGAGGATCAGTCGAGTCCCCTCTGCACACTGCCAATCCTG
* * *
17575960 TTGCCGCAACCCTCAGTTCGGTCTGATCTTAGATTGGGAATTAACTACGTATAGCTAAGTCAACC
130 TTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATTAACTACGTATAGCTAAGTCAACC
* * * *
17576025 CACAAAACGAGCGTGCAGGCGCTCAGCCGGCTAGAGGGGCAGAATGTGCAAGCCGGGGATCGGTC
195 CACAAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGAATGCGCAAGCCGAGGATCAGTC
* * *
17576090 GGGTCCCCCTCTGCGTGCCATCGATCCTGTTACCGTAACCCTCGGTCCGGTCCCATCT
260 GGGTCCCCCTCTGCGCGCCACCAATCCTGTTACCGTAACCCTCGGTCCGGTCCCATCT
* * ** * *
17576148 TAGACTAGGAATGAACTCTGTATACCTAACCCAACCGACAAAACGAGCG
1 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCG
17576197 GGCAAGCGGG
Statistics
Matches: 318, Mismatches: 46, Indels: 3
0.87 0.13 0.01
Matches are distributed among these distances:
315 1 0.00
316 229 0.72
317 88 0.28
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (317 bp):
TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGTTCAGCCG
GCCAGAAGGTCAGGATGCATAAGTCGAGGATCAGTCGAGTCCCCTCTGCACACTGCCAATCCTGT
TGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATTAACTACGTATAGCTAAGTCAACCC
ACAAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGAATGCGCAAGCCGAGGATCAGTCG
GGTCCCCCTCTGCGCGCCACCAATCCTGTTACCGTAACCCTCGGTCCGGTCCCATCT
Found at i:17577563 original size:26 final size:26
Alignment explanation
Indices: 17577525--17577577 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17577515 CGGGTTCGAT
*
17577525 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17577551 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17577577 C
1 C
17577578 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17578449 original size:26 final size:26
Alignment explanation
Indices: 17578410--17578462 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17578400 CTAGTCTGAT
*
17578410 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17578436 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17578462 C
1 C
17578463 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17579163 original size:26 final size:26
Alignment explanation
Indices: 17579134--17579186 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17579124 CCAATTCAAT
17579134 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17579160 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17579186 C
1 C
17579187 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17579171 original size:724 final size:723
Alignment explanation
Indices: 17577786--17579198 Score: 2188
Period size: 724 Copynumber: 2.0 Consensus size: 723
17577776 CTACGTCAGA
* *
17577786 CAGAGAGATGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCAT
1 CAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCCTCAT
17577851 ATTTCTACATCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
66 ATTTCTACATCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * *
17577916 GTGAAGTTTTAGGCAAGATGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTG
131 GTGAAGTTTAAGGCAAGACGACCCATTTTCTATTTTTCATCAATTTTGAAACTTTTTACGGTTCG
* ** * * *
17577981 GGGTTTTTTAAAATTTTTTCGGAAGGATTTTTGGTCCCAAACTTGGTAAACGTGATCCTTGTAAT
196 AGAATTTTTAAAATTTTTTCGGAAGGAGTTTCGGCCCCAAACTTGGTAAACGTGATCCTTGTAAT
* * *
17578046 TTTGTTGGCATGCATAAAACAATTCAGCTAATAACTCGAAGTGTACAAGATTTTGTGACCATTTC
261 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTC
* *
17578111 AAAAAAGTGTTCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATG
326 AAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAACCTCAAATG
*
17578176 CTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAACT
391 CTCTTTAAAGGGGTCTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAACT
* * *
17578241 ACCAGCAGCCATCGCATATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
456 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGC
*
17578306 CGCTGATCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAA
521 CGCCGATCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAA
* * * *
17578371 GCCCAGCATGTGCTGCCGTAACCCTCAGCCTAGTCTGATCTTAGATTGAGAATGAACTCCGTATG
586 GCCCAGCATGTGCTGCCGTAACCCTCAGCCAAGTCTAATCTTAGACTGAGAATGAACTCCATATG
17578436 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCAAGCGTGCAAT
651 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCAAGCGTGCAAT
17578501 TCACCGGC
716 TCACCGGC
* * * * *
17578509 CAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCCTCGT
1 CAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCCTCAT
* * *
17578574 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
66 ATTTCTACATCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
17578639 GTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCA-CAATTTTGAAAACTTTTTACGGTT
131 GTGAAGTTTAA-GGCAAGACGACCCATTTTCTATTTTTCATCAATTTTG-AAACTTTTTACGGTT
*
17578703 CGAGAATTTTTAAAATTTTTTCGGAAGGAGTTTCGGCCCCAAACTT-TTAAGACGTGATCCTTGT
194 CGAGAATTTTTAAAATTTTTTCGGAAGGAGTTTCGGCCCCAAACTTGGTAA-ACGTGATCCTTGT
* *
17578767 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTAT
258 AATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* ** *
17578832 TTGAAAAAAGTGTTTGCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAA
323 TTCAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAACCTCAA
*
17578897 ATGCTCTTT-AAGAGGGTCTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCC
388 ATGCTCTTTAAAG-GGGTCTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCC
* * * * *
17578960 AAGTATCAGCACCCATCGCACATCATGTGTGCACACCCCTCAGCCCCCTCGATCGTTGGAACCCC
452 AACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCC-CGATCGTCGGAACCCC
* * ** *
17579025 AATGCCGCCGGTCAGGTTCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGTGGCACCTGCACATG
516 AATGCCGCCGATCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG
* * * * *
17579090 CCCGAGCCCAGTATGTGCTGCCGTAACCCTCGGTCCAATTC-AATCTTAGACTGGGAATGAACTC
581 CCCAAGCCCAGCATGTGCTGCCGTAACCCTCAG-CCAAGTCTAATCTTAGACTGAGAATGAACTC
*
17579154 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCG
645 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
17579199 GCCAGAGGGG
Statistics
Matches: 623, Mismatches: 61, Indels: 11
0.90 0.09 0.02
Matches are distributed among these distances:
723 196 0.31
724 422 0.68
725 5 0.01
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (723 bp):
CAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCCTCAT
ATTTCTACATCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTAAGGCAAGACGACCCATTTTCTATTTTTCATCAATTTTGAAACTTTTTACGGTTCG
AGAATTTTTAAAATTTTTTCGGAAGGAGTTTCGGCCCCAAACTTGGTAAACGTGATCCTTGTAAT
TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTC
AAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAACCTCAAATG
CTCTTTAAAGGGGTCTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAACT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGC
CGCCGATCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAA
GCCCAGCATGTGCTGCCGTAACCCTCAGCCAAGTCTAATCTTAGACTGAGAATGAACTCCATATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCAAGCGTGCAAT
TCACCGGC
Found at i:17580042 original size:26 final size:26
Alignment explanation
Indices: 17580006--17580058 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17579996 TCGGTCTGGT
* *
17580006 CTTATACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17580032 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17580058 C
1 C
17580059 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17580923 original size:26 final size:26
Alignment explanation
Indices: 17580887--17580939 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17580877 CTGGTCCAAT
*
17580887 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17580913 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17580939 C
1 C
17580940 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:17581141 original size:891 final size:888
Alignment explanation
Indices: 17578436--17582875 Score: 5391
Period size: 876 Copynumber: 5.0 Consensus size: 888
17578426 ACTCCGTATG
* * ** *
17578436 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGC----GGGCAAGCGTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGG
* * ** *
17578497 CAATTCACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * ***
17578562 TCACATCCTCGTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
17578627 TTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCAC-AATTTTGAAAA
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAA
* * * *
17578691 CTTTTTACGGTTCGAGAATTTTTAAAATTTTTTCGGAAGGAGTTTCGGCCCCAAACTT-TTAAGA
260 CTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT-AGA
* *
17578755 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGA
* *** *
17578820 TTTTGTGACTATTTGAAAAAAGTGTTTGCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
17578885 GTAAAATCTCAAATGCTCTTTAAGAGGGTCTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG-CA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
17578949 ATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGTGCACACCCCTCAGCCCC-CTCGAT
519 ATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTC-CGAT
* * **
17579013 CGTTGGAACCCCAATGCCGCCGGTCAGGTTCTC-CG-G-T-G-ATGGTGCCCCGGTGAAGAAAAA
583 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCACGAGCTCGAATGATGCCCCGACGAAGAAAAA
*** * * * * * * **
17579073 TGTGGCACCTGCACATGCCCGAGCCCAGTATGTGCTGCCGTAACCCTCGGTCCAATTCAATCTTA
648 TACAGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGCT-C---T-GGTCTTA
*
17579138 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT-------C--
708 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
17579194 -A--A-------------C---CGGCCAGAGGGGCGGGATGCACAAGCCGGGAATCGACCGGGTC
773 AACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGAGGGATGCGCAAGCCGGGAATCGGCCGGGTC
* * * * * *
17579240 CCCCTCTGCATGCTGCCTATCGTGCT-GCAGCAACCCTCGGTCTAGT-TCAAT
838 CCCCTCTGCGTGCTGCCGATCCTGCTATC-GCAACCCTCGGTCCAGTCT-GAT
* * * * *
17579291 CTTAGACTAGGAATGAACTCCGTTTGCTTAAGCCAACCGATGAAACGAGCGTGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGTGGGCGGG
* *
17579356 CGGGCACTACGTCGGCCAGAGAGACGGGGATGTGCAAGCCGTGGATCGATAGGGTGGTTGGTGGG
62 CGGGCACTACGTCGGCCAGAGAGAC-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
17579421 TTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
126 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
17579486 GTTCCTTAAGCCTTCACGTGAAGGTTCTTGGCAAGACGACTCGTTTCCTATTTTTCACGATTTTC
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
17579551 AAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGACCCCAAACTTGGT
256 GAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
17579616 AGACGTTATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGTGTACA
*
17579681 AGATTTTGTGACCATTTGAAAAAAGTGT-TCC-TTTCAGACACTTTAATGGCTACTGGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
17579744 CCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * * *
17579809 CCAATATAAGGGCCAAGTACCAGCTCCCATCGTACATCATGTGCGCACAAGACCTCCTGGCCCCC
516 CCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC---ACCCCCCGGCCCCT
17579874 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGACGATCG-TGCCCC
578 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-TC-ACGA-GCT-CGA--AT-GATGCCCC
* * * * *
17579938 -AGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
636 GA-CGAAGAAAAATACAGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGCTC
* * *
17580002 TGGTCTTATACTGGGGATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
700 TGGTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
17580067 ACCCATGAAACGAGCGTGCGGGCGCTCATTCGACC-GAGGGGTGGGATGTGCAAGCCGAGAATCG
765 ACCCACGAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGAGGGATGCGCAAGCCGGGAATCG
* * * * * * * *
17580131 GCCAGGTCCCTCTCTGCGTGCTACCGATCTTGCTATCGTAACCTTCGGTTCGGTCTGAT
830 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCCAGTCTGAT
*
17580190 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGT-GGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGG
* * * *
17580254 CACTACGTCGGCCAGGGAGACGGGATCCGCAAGCCATGGATCGATA-GGTGGCAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
17580318 GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
17580383 TTAAGCGTTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
17580448 TTTTTATGGTTCGA-AATTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTAGACG
261 TTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
17580512 TGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAA-TGTA-AAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATT
*
17580575 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTACTGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
17580640 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCAAGGTTTGATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
17580705 ATAAAGGCCAAGTACCAGCACCCATGGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGT
521 ATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGT
* * **
17580770 CGAAACCCAAATGCCGCCGGTCA-GTTCTC-CG-G-T-GAA-GATGCCCCGACGAAGAAAAATGT
586 CGGAACCCCAATGCCGCCGGTCAGGTTCTCACGAGCTCGAATGATGCCCCGACGAAGAAAAATAC
* * * * * *
17580829 AGCACCAGTACATGCCCGAGCCCAGCATGTGCTGCTGTAACCTTCGCTCTGGTCCAATCTTAGAC
651 AGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGCTCTGG-----TCTTAGAC
* *
17580894 TGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAAT
711 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * **
17580959 GAGCGTACGGGCGCTCAACCGGCCAGAGGGGAGGGATACGCAAGTCGGGGATCGGTTGGGTCCCC
776 GAGCGTGCGGGCGCTCAATCGGCCAGAGGGGAGGGATGCGCAAGCCGGGAATCGGCCGGGTCCCC
* * * *
17581024 CTCTGCGTGCTGTCGATCCTACT-GCTGCAACCCTCAGTCCAGTCTGAT
841 CTCTGCGTGCTGCCGATCCTGCTATC-GCAACCCTCGGTCCAGTCTGAT
* * *
17581072 CTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGTGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGTGGGCGGG
* * * *
17581137 CGGGCACTACGCCGGCAAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
17581202 TTAGGCACATCTTCATATTTCTGTG-GCCAATGCCAATTTTT-TGGCTTGTAAATTCTTACAATG
127 TTAGGCACATCTTCATATTTCTATGTGCCAATGCC-ATTTTTATGGCTTGTAAATTCATACAATG
* **
17581265 GTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGGTGACTCGTTTTCTATTTTTCACGATTTTT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
17581330 GAAACTTTTTAGGGTTCGAGATTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
256 GAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
17581394 TGACGTGATCCTTGTATGTTTT-TTGGCTTGCATAAAAAAATTCAGCTAAAAACA-CGAAGTGTA
321 AGACGTGATCCTTGTAT-TTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAA-ATCGAAGTGTA
* * *
17581457 CAAGATTTTATAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCA
384 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
17581522 AACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
449 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
17581587 GGCCAATAT-AAGGAACAAGTACCAGCACCCTTGGCACATCATGTGCGCACACCCCCCCGACCCC
514 GGCCAATATAAAGG-CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC
* * * * *
17581651 -CCGATCGTCGGAACCCCAATGCTGTCGATCAGGTTTTTCAACGATGCTCCGGCAATGGTGCCCC
577 TCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG-TTCTC-ACGA-GCT-C-G-AATGATGCCCC
* *
17581715 GACGAAGACAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAA--C-C-CTC-
636 GACGAAGAAAAATACAGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGCTCT
*
17581775 GG---T---C------TG-A-TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
701 GGTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
17581824 CCCATGAAACGAGCGTGCGGGTGCTCATTCGACC-GAGGGGTA-GGATGTGCAAGCTGAGAATCG
766 CCCACGAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGG-AGGGATGCGCAAGCCGGGAATCG
* * * * * * * *
17581887 GCCAGGTCCCTCTCTGCGTGCTACCGATCTTGCTATCGTAACCTTCGGTTCGGTCTGAT
830 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCCAGTCTGAT
*
17581946 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGTGGCCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGT----GGGCGGG
* *
17582011 CGGGCACTACGTCGGGCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
17582076 TTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
17582141 TCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
17582206 AAACTTTTTGTGGTTC-AGGATTTTTTAAAATTTTTTCGAAAGCAGTTTTGGCCCCAAACTTGGT
257 AAACTTTTTATGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
17582270 AGACGTGATCCTTGTAGTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGTGTACA
17582335 AGACTTTT-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
386 AGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
17582399 ACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
17582464 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCT
515 GCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCC
* * *
17582529 GATCG-CTGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGG
580 GATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTC--ACGA-GCT-CGA--ATGATGCCCCGA
* * ** * *
17582593 TGAAGAGAAATATGGCACC-GACACATGCTCAAGCCCAGGATGTGCTACCGCAACCCTCGGTCCG
638 CGAAGAAAAATACAGCACCAG-CACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTC-G--C-
* * * * *
17582657 GTCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCGAAG
698 -TCTGGTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * * *
17582722 TCAACCTGCGAAACGAGCGTGCGTGCGCTCAGTCGGCCAGAGGGGTA-GGATGCACAAGTCGGGG
762 TCAACCCACGAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGG-AGGGATGCGCAAGCCGGGA
** ** * *
17582786 ATCGATCGGGTCCCCCTCTGTTTGCTGCCAATCCTGCTATCGCAACCCTCGGT-CTGATCTGAT
826 ATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCCAG-TCTGAT
17582849 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
17582876 TTAGACTGGG
Statistics
Matches: 3109, Mismatches: 332, Indels: 240
0.84 0.09 0.07
Matches are distributed among these distances:
855 44 0.01
859 2 0.00
862 91 0.03
863 70 0.02
864 294 0.09
865 5 0.00
866 43 0.01
867 3 0.00
869 2 0.00
870 9 0.00
871 2 0.00
872 59 0.02
873 3 0.00
874 202 0.06
875 205 0.07
876 402 0.13
877 76 0.02
878 3 0.00
879 5 0.00
881 89 0.03
882 108 0.03
883 3 0.00
884 3 0.00
885 4 0.00
886 11 0.00
887 238 0.08
888 108 0.03
889 222 0.07
890 18 0.01
891 235 0.08
892 146 0.05
893 24 0.01
894 30 0.01
895 6 0.00
896 3 0.00
897 4 0.00
898 2 0.00
899 111 0.04
900 11 0.00
901 57 0.02
902 63 0.02
903 93 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGG
CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGT
CGGAACCCCAATGCCGCCGGTCAGGTTCTCACGAGCTCGAATGATGCCCCGACGAAGAAAAATAC
AGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGCTCTGGTCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAATCGGCCAGAGGGGAGGGATGCGCAAGCCGGGAATCGGCCGGGTCCCCCTCTG
CGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCCAGTCTGAT
Found at i:17582693 original size:26 final size:26
Alignment explanation
Indices: 17582664--17582716 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17582654 CCGGTCCGAT
17582664 CTTAGACTGGGAAA-GAACTCCGTATG
1 CTTAGACT-GGAAATGAACTCCGTATG
17582690 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17582716 C
1 C
17582717 CGAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17582885 original size:26 final size:26
Alignment explanation
Indices: 17582849--17582901 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17582839 CTGATCTGAT
17582849 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17582875 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17582901 C
1 C
17582902 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17582960 original size:185 final size:185
Alignment explanation
Indices: 17582635--17583057 Score: 598
Period size: 185 Copynumber: 2.3 Consensus size: 185
17582625 GCCCAGGATG
* * *
17582635 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGG
1 TGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** *
17582700 AAATGAACTCCGTATGCCGAAGTCAACCTGCGAAACGAGCGTGCGTGCGCTCAGTCGGCCAGAGG
66 AAATGAACTCCGTATGCCGAAGTCAACCCACGAAACGAGCGTGCGTGAGCTCAGTCGGCCAGAGG
* * ** *
17582765 GGTAGGATGCACAAGTCGGGGATC-GATCGGGTCCCCCTCTGTTTGCTGCCAATCC
131 GGCAGGATGCACAAGTCGGGGATCGGCT-GGGTCCCCCTCTGCGTCCTGCCAATCC
* *
17582820 TGCTATCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
17582885 GAATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGTGAGCTCAGTCGGCCAGAGG
66 AAATGAACTCCGTATGCCGAAGTCAACCCACGAAACGAGCGTGCGTGAGCTCAGTCGGCCAGAGG
* *
17582950 GGCGGGATGCACAAGTCGGGGATCGGCTGGGTCCCCCTCTGCGTCCTGCCGATCC
131 GGCAGGATGCACAAGTCGGGGATCGGCTGGGTCCCCCTCTGCGTCCTGCCAATCC
* ** ** *
17583005 TGCTGCCATAACCCTCAAT-TCGATCCGATCTTAGACTGCGAATGAACTCCGTA
1 TGCTACCGCAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTA
17583058 CGCCTAAGCC
Statistics
Matches: 210, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
184 1 0.00
185 207 0.99
186 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (185 bp):
TGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
AAATGAACTCCGTATGCCGAAGTCAACCCACGAAACGAGCGTGCGTGAGCTCAGTCGGCCAGAGG
GGCAGGATGCACAAGTCGGGGATCGGCTGGGTCCCCCTCTGCGTCCTGCCAATCC
Found at i:17583784 original size:26 final size:26
Alignment explanation
Indices: 17583748--17583800 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17583738 CCGGTCCGAT
* *
17583748 CTTAGACTGGGAATGTACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17583774 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17583800 C
1 C
17583801 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17586440 original size:26 final size:26
Alignment explanation
Indices: 17586390--17586441 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17586380 CAGTCCGATT
* **
17586390 TTAGATTGGGAATGAACTTTATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
17586416 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
17586442 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:17588175 original size:26 final size:26
Alignment explanation
Indices: 17588146--17588198 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17588136 CACATCCGAT
17588146 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * * *
17588172 CTTAGATTGGGAATGAATTCCTTATG
1 CTTACACTGGGAATGAACTCCGTATG
17588198 C
1 C
17588199 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:17589083 original size:26 final size:26
Alignment explanation
Indices: 17589054--17589106 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17589044 CCAGTCCGAT
*
17589054 CTTAGACTAGGAGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
17589080 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17589106 C
1 C
17589107 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17589242 original size:908 final size:900
Alignment explanation
Indices: 17587273--17594300 Score: 9255
Period size: 908 Copynumber: 7.9 Consensus size: 900
17587263 CCGATCTGAT
* *
17587273 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17587338 CGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGATCCCCCTCTGTGTGCTACCGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * ** * *
17587403 TGCTATTGTAACCCTCGATCTAGTCTAATC-TAGACTGGGAATGAACTCCTTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
17587467 CCGACGAAACGAGC--G-G-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
17587528 GCCGTGGATCGATAAGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
17587593 TTTTTATGGCTTCTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGGTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17587658 GACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTAGAGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* **
17587723 CGGAAGCAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCACAAAA
455 CGGAAGGAGTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17587788 CAATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
519 -AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
17587853 AGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGAGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
17587918 TTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
17587983 CATGTGCGCACATCCCCCCTGACCCCCCAATCGTCGGAACCCCAATGCCGGCGGTCAGGTTCTCC
713 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
*
17588048 TGCGATGCTCC-AGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
778 -GCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
17588112 GCATGTGCTGCCATAACCCTCGGTCACA-TCCGATCTTACACTGGGAATGAACTCCGTATG
841 GCATGTGCTACCACAACCCTCGGTC-CAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17588172 CTTAGATTGGGAATGAATTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
17588237 CGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCGAG-TGGGTCCTTCTCTGTGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
17588301 CTGCTGCTGTAACCCTCGATCTGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
17588366 ACTGACGAAACGAGCGGGCGGTTAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
195 ACCGACGAAACGAGCGGGC-G--A-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * *
17588431 CGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
256 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
17588496 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
321 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
17588561 AAGATGACTCATTTTCTATTTTTCACGATTTATGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
386 AAGACGACTCGTTTTCTATTTTTCATGATTT-TGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
** * *
17588626 TTTTTCGGAAGGAGTTTTGGCTAAAAGCTTGGTAGACGTGATCCTTGTATTTTTTTTTGCATGCA
450 TTTTTCGGAAGGAGTTTTGGCCCAAA-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
17588691 CAAAAGAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCC
514 CAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
17588756 ATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTGAGGGAGT
578 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
17588821 GTGAGTTCTTGAGGTTTGATGAGGGATATGAGGCCAATATAAGGGCCAAGTTCCAGCACCCATCG
643 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
17588886 CACATCACGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTTAGGT
708 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* *
17588951 TCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAG
773 TCTCCG-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* ** * *
17589016 CCCAGCATGTGCTATCGTAACCCTCGGTCCAGTCCGATCTTAGACTAGGAGTGAACTCCGTATG
837 CCCAGCATGTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17589080 CTTAGACTGGGAATGAATTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17589145 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCAGATCCCCCTCTACGTGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** *
17589210 TGCTGCTGTAACCTTCGGTTTGGT-TCGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCA
131 TGCTGCTGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17589274 ACCGA-TAAA--A-----CGACCGGGCGGGCGGGCACTACGTCGGCCCGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
17589331 A-CCGTGAATCGATAGGGTGGTAAGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
17589395 ATTTTTATGGCTTGTAAATTCATGCAATGGTCCGTCAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
17589460 CGACTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCATGATTTT-GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
17589525 TCGAAAGGAGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
454 TCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
17589590 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
17589655 CAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17589720 GTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCACATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
17589785 TCATGTGCGCACA-CCCCCCGACTCCCCCAATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTC
712 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * ** * *
17589849 TGGCAATGCTTCGACGATGGTGCCCCGATGAAGAAAAATGCGGCTGCACCACATGCCTGAGCCCA
777 -CGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* ** *
17589914 GAATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
841 GCATGTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** *
17589974 CTTAGACTGGGAATGAACTCCGTATG-CTAAGTCAACACACGAAACGAGCGTATGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
17590038 CGGCCAGAGGGGCAGGATGTGCAAGTCGGGGATTGGTCGGGTCCCCCACTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
17590103 TGTTGCTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
17590168 TTGATGAAACGAGCGGGCGAGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGGAA
196 CCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* **
17590233 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGTGTGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
17590298 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAATAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17590363 GACTCGTTTTCTATTTTTCATGATTTTTGAATCTTTTTACAGTTCAGGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
17590428 TGGAAGGTGTTTTGCCCCAAATTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
455 CGGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAA
* * * *
17590493 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCGTTTGAGAAAAGTGTCCCCATTTTA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
17590558 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17590623 TCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
17590688 ACGTGCGCACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGGCGGTCAGGTTCTCC
714 ATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** ** * **
17590753 GACGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCTTGAGCCCAG
778 G-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
17590818 CATGTGCTACCACAA-CC-C--T-C-G---G----T---C-----ATG---TCCG-AT-
842 CATGTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17590851 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
17590916 CGGCCAGAGGGGCGGGATGCCCAAGTCGGGGATCGGCCGGGTCCTCCTTTGTGTGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
17590981 TGCTACTGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGGATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** *
17591046 CCGACGAAATGAGAGGGCGGGCAGGCGGGCGGGCACTACGCATGCCAAAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
17591111 GCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
17591176 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17591240 GACTCGTTTTCTATTTTTCACGAATTTTGAAA-TATTTTACGGTTCGAGATTTTTTGAAATTTTT
391 GACTCGTTTTCTATTTTTCATG-ATTTTGAAACT-TTTTACGGTTCGGGATTTTTT-AAAATTTT
* *
17591304 TTC-AAAGGAGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACACA
453 TTCGGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA-A
* * *
17591368 AAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATAT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
17591433 CAGACAATGTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGC-CTTTTAAGGGGGAGTG
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTG
* * *
17591497 AGTTCTCGAGGTTTGATGAGGCATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
17591562 ATCATGTGCGCACGCCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCTGCTGGTCAGGTTCT
711 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
17591626 -C-C---G----G-CGATAGTG-CCCTAGGGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
776 CCGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
17591680 AGCATGTGCTGCTACAACCCTC-G----GTCCGATC-----C-------G-A-T-C-T-TG
840 AGCATGTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
17591719 ----GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
17591780 CGGCCAGAGGGGCGGGATGCGCAAGCCAGAGATCGACCAGGTCCCCCTCTGCAG-GCTACCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGC-GTGCTGCCGATC
* * * ** * *
17591844 CTGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGCGAATGAACTCCGTACGCCTAAGCCA
130 CTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
17591909 ACCGACGAAACGAGCGGGCG-GATGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATG-GTT
195 ACCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG-C
17591972 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
17592037 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
17592102 ACGACTCGTTTTCTCTTTTTCATGATTTTTGAAACTTTTT-CGGTTCGGGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * * *
17592166 TTTGAAAGGAGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCATAAA
453 TTCGGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
17592231 AAAATCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCAATTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
17592296 AGACACTTTAATGGCTACTGGCTGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
17592361 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
17592426 CATGTGCGCACACCCCCCAGGCCCCCCCGATTGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCC
713 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
17592491 GACGATGCTGCGGCGATGGTAG-CCTGACGAAGAAAAATGTGGCACCAGTACATGCCCGAGCACA
778 G-CGATGCTCCGACGATGGT-GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
17592555 GCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAGGAACTCCATATG
841 GCATGTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17592615 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17592680 CGGCCAGAGGGGCGGGTTGCGCAAGCCAGGGATCAGCCGGGTCCCCCACTACATGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
17592745 TGCTGCTGCAACCCTTGATCTGGTCTGACCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
17592810 CTGATGAAACGAGC--G-GA-TGGGCGGGCGGGCACTACGCTGGCCAAAGAGACGGGATGTGCAA
196 CCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
17592871 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
17592936 TTTTTATGGCTTGTAAATTCATGCAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
17593001 GACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTAAAAATTTTTT
391 GACTCGTTTTCTATTTTTCATGATTTT-GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
17593066 TGGAATGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-CAAAA
455 CGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17593130 AACTTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTC
519 AA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
17593195 AGACACTTTAATAGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
17593260 TCCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
17593325 CATGTGCGCACACCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG-T-T--
713 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
17593386 -C--T-CT--GACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGC
778 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * ** *
17593445 ATGTGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
843 ATGTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
17593503 CTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACCCATAAAACGAGCGTACGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
17593568 CGGCCAGAGGGGTGGGATGCACAAGTCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * * * * *
17593633 TATTACTGCAACCCTCAGTCCGAT-TCAATCTTAGACTAGGAATGAGCTCCGTATGCCTAAGCCT
131 TGCTGCTGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * ** *
17593697 ACCGATGAAATGAGC--G-G-GCGGTCGGGCGAGCACTACTCCGGCCTGAGTGGCAAGATGCACA
195 ACCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * ***
17593758 AGTCATGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
17593823 ATTTTTATGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
17593888 TGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGAATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCATGATTTT-GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
17593953 TCGCAAGGATTTTTTGTCCCAAACTTGGTATACGTGATGCTTATATTTTTGTTGGCATGCACAAA
454 TCGGAAGGA-GTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
* *
17594018 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17594083 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGTGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** * *
17594147 GCCCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* **
17594212 TCATGTGCGTACA-CCCCCCGGCCCCCCCGATCGTCGGAACCTTAATGCCGCCGGTCAGGTTCTC
712 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
17594276 CGCCGATGCTCTGGCAATGGTGCCC
777 CG-CGATGCTCCGACGATGGTGCCC
17594301 AGCCAACCAA
Statistics
Matches: 5416, Mismatches: 589, Indels: 249
0.87 0.09 0.04
Matches are distributed among these distances:
862 207 0.04
863 258 0.05
864 284 0.05
865 6 0.00
866 2 0.00
867 1 0.00
868 3 0.00
869 3 0.00
870 1 0.00
872 1 0.00
873 1 0.00
874 59 0.01
875 43 0.01
876 11 0.00
877 328 0.06
878 318 0.06
879 12 0.00
882 3 0.00
884 1 0.00
887 45 0.01
888 608 0.11
889 116 0.02
890 9 0.00
891 2 0.00
892 1 0.00
893 147 0.03
894 184 0.03
895 422 0.08
896 58 0.01
897 196 0.04
898 57 0.01
899 413 0.08
900 226 0.04
901 285 0.05
902 185 0.03
903 113 0.02
904 1 0.00
905 1 0.00
907 13 0.00
908 791 0.15
909 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17589977 original size:26 final size:26
Alignment explanation
Indices: 17589948--17590001 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
17589938 CCAGTCCGAT
17589948 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17589974 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17590000 CT
1 CT
17590002 AAGTCAACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17592625 original size:26 final size:26
Alignment explanation
Indices: 17592589--17592641 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17592579 CCGGTCCGAT
17592589 CTTAGACTGGGAAGGAACTCCATATG
1 CTTAGACTGGGAAGGAACTCCATATG
* *
17592615 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCATATG
17592641 C
1 C
17592642 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCATATG
Found at i:17593513 original size:26 final size:26
Alignment explanation
Indices: 17593477--17593529 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17593467 CTGGTCCGAT
17593477 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17593503 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17593529 C
1 C
17593530 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17593809 original size:888 final size:891
Alignment explanation
Indices: 17591719--17594277 Score: 3615
Period size: 888 Copynumber: 2.9 Consensus size: 891
17591709 TCCGATCTTG
*
17591719 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * *
17591784 CAGAGGGGCGGGATGCGCAAGCCAGAGATCGACCAGGTCCCCCTCTGCAG-GCTACCAATCCTGC
66 CAGAGGGGCGGGATGCGCAAGCCAG-GATCGGCCGGGTCCCCCTCTG-AGTGCTGCCAATCCTGC
* * * *
17591848 TGCCGCAACCCTCAGTCC-AGTCCAATCTTAGACTGCGAATGAACTCCGTACGCCTAAGCCAACC
129 TGCTGCAACCCTCAGTCCGA-TTCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACC
* ***
17591912 GACGAAACGAGCGGGCGGATGGCGGGC-AGGCACTACGT-CGGCCAGAGAGACGGGATGGTTAAG
193 GATGAAACGAGCGGGCGG-T--CGGGCGA-GCACTAC-TCCGGCCAGAGAGACGGGATGCACAAG
*
17591975 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
253 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
17592040 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
318 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* **
17592105 ACTCGTTTTCTCTTTTTCATGATTTTTGAAACTTTTT-CGGTTCGGGATTTTTTAAAATTTTTTT
383 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTT
* *
17592169 GAAAGGAGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTG-CATAAAAA
448 GAAAGGTGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCCA-AAAAA
* * * *
17592233 AATCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCAATTCAG
512 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
17592298 ACACTTTAATGGCTACTGGCTGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
577 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTC
* *
17592363 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
641 CTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
17592428 TGTGCGCACACCCCCCAGGCCCCCCCGATTGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGA
706 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGA
* * *
17592493 CGATGCTGCGGCGATGGTAGCCTGACGAAGAAAAATGTGGCACCAGTACATGCCCGAGCACAGCA
771 CGA--CT--GGCGATGG-ACCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAGCA
*
17592558 TGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAGGAACTCCATATGCTTA
831 TGTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAGGAACTCCATATGCTTA
* *
17592619 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
17592684 CAGAGGGGCGGGTTGCGCAAGCCAGGGATCAGCCGGGTCCCCCACT-ACATGCTGCCAATCCTGC
66 CAGAGGGGCGGGATGCGCAAGCCA-GGATCGGCCGGGTCCCCCTCTGA-GTGCTGCCAATCCTGC
* * * * *
17592748 TGCTGCAACCCT-TGATCTG-GTCTGACCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAAC
129 TGCTGCAACCCTCAG-TCCGATTC-AATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * * * * **
17592811 TGATGAAACGAGCGGATGGGCGGGCGGGCACTACGCTGGCCAAAGAGACGGGATGTGCAAGCCGT
192 CGATGAAACGAGCGGGCGGTCGGGCGAGCACTACTCCGGCCAGAGAGACGGGATGCACAAGCCGT
17592876 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
257 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* *
17592941 ATGGCTTGTAAATTCATGCAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
17593006 ATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTAAAAATTTTTTTGGAA
387 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAA
* *
17593071 TGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCCAAAAAACTTC
452 GGTGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCCAAAAAAATTC
* *
17593136 ACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACAC
516 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
17593201 TTTAATAGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTCCTCG
581 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTCCTCG
17593266 AGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
645 AGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
17593331 CGCACACCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGA-
710 CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGAC
* * * * *
17593395 T-G-G-T-G-CCCTGGCGAAGAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGCATGTGCTATC
775 TGGCGATGGACCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAGCATGTGCTACC
* * *
17593455 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
840 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAGGAACTCCATATGCTTA
* * ** * *
17593507 GACTGGGAATGAACTCCATATGCCAAAGTCAACCCATAAAACGAGCGTACGGGCGTTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * **
17593572 CAGAGGGGTGGGATGCACAAGTCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTATT
66 CAGAGGGGCGGGATGCGCAAG-CCAGGATCGGCCGGGTCCCCCTCTGAGTGCTGCCAATCCTGCT
* * *
17593637 ACTGCAACCCTCAGTCCGATTCAATCTTAGACT-AGGAATGAGCTCCGTATGCCTAAGCCTACCG
130 GCTGCAACCCTCAGTCCGATTCAATCTTAGACTGA-GAATGAACTCCGTATGCCTAAGCCAACCG
* * * * ** * *
17593701 ATGAAATGAGCGGGCGGTCGGGCGAGCACTACTCCGGCCTGAGTGGCAAGATGCACAAGTCATGG
194 ATGAAACGAGCGGGCGGTCGGGCGAGCACTACTCCGGCCAGAGAGACGGGATGCACAAGCCGTGG
* **
17593766 ATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * *
17593831 GGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGATGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
17593896 TTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGAATTTTTTAAAATTTTTTCGCAAGG
389 TTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGG
* * * * * *
17593961 ATTTTTTGTCCCAAACTTGGTATACGTGATGCTTATATTTTTGTTGGCATGCACAAAAAAATTCA
454 -TGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-CAAAAAAATTCA
* * *
17594026 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGACACT
517 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
17594091 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGTGTGAGCCCTCAAG
582 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTCCTCGAG
17594156 GTTTGATGAGGGAT-AGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
647 GTTTGATGAGGGATAAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
17594220 GTACA-CCCCCCGGCCCCCCCGATCGTCGGAACCTTAATGCCGCCGGTCAGGTTCTCCG
711 GCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCG
17594278 CCGATGCTCT
Statistics
Matches: 1479, Mismatches: 160, Indels: 53
0.87 0.09 0.03
Matches are distributed among these distances:
887 54 0.04
888 593 0.40
889 128 0.09
890 1 0.00
891 1 0.00
892 1 0.00
893 1 0.00
896 1 0.00
897 192 0.13
898 38 0.03
899 288 0.19
900 180 0.12
901 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGCGCAAGCCAGGATCGGCCGGGTCCCCCTCTGAGTGCTGCCAATCCTGCTG
CTGCAACCCTCAGTCCGATTCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGAT
GAAACGAGCGGGCGGTCGGGCGAGCACTACTCCGGCCAGAGAGACGGGATGCACAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGTG
TTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCCAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTCCTCGAGGTTT
GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGACTGGCGA
TGGACCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAGCATGTGCTACCACAACC
CTCGGTCCGGTCCGATCTTAGACTGGGAAGGAACTCCATATGCTTA
Found at i:17595010 original size:26 final size:26
Alignment explanation
Indices: 17594981--17595033 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17594971 CCGGTCCGAT
17594981 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17595007 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17595033 C
1 C
17595034 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17595913 original size:26 final size:26
Alignment explanation
Indices: 17595884--17595958 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
17595874 CGATCCGATA
*
17595884 TTAGACTGGGAATGAACTCCGTAAGC
1 TTAGACTTGGAATGAACTCCGTAAGC
17595910 TTAGACTTGGAATGAACTCCGTAAGC
1 TTAGACTTGGAATGAACTCCGTAAGC
*
17595936 TTAGACTTGGAATGAACTTCGTA
1 TTAGACTTGGAATGAACTCCGTA
17595959 TGCCTACGTC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (26 bp):
TTAGACTTGGAATGAACTCCGTAAGC
Found at i:17596842 original size:26 final size:26
Alignment explanation
Indices: 17596806--17596858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17596796 CTTGTCCGAT
17596806 CTTAGACTGGGAACGAACCCCATATG
1 CTTAGACTGGGAACGAACCCCATATG
* * *
17596832 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACCCCATATG
17596858 C
1 C
17596859 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACCCCATATG
Found at i:17597746 original size:26 final size:26
Alignment explanation
Indices: 17597708--17597758 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17597698 CTGGTCCAAT
*
17597708 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17597734 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17597759 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17597946 original size:902 final size:901
Alignment explanation
Indices: 17594322--17614192 Score: 15208
Period size: 902 Copynumber: 21.8 Consensus size: 901
17594312 GAAATAAGCG
* * * * *
17594322 GGCGGGCACCACACCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGATGG
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
17594387 GTTTAGGCACATATTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
17594452 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
* * * ***
17594517 TGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGAAACCAAACTTGG
196 TGAAACTTTTTACGGTTC-GGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * * *
17594582 TAGACATGAACCTTGTATTTTTGTTGGCATGCAGAAAACAATTCAGCTAGAAACTGGAAGTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
17594647 AAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATAGCTACTGGTAGCA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * * * * *
17594712 AACCTGTAAAAACTCGACTGCTTTTTAAGGGTGTATGGGTTCTCAAGGTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
17594777 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACACCCCTCCCGACC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC-CCGGCCC
* *
17594842 CCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCC
517 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT-CAGCGATGGTGCCC
* * * ***
17594907 CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCGCAACCCTTAATC
581 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
17594972 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
646 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
17595037 AGTCAACCCACGAAACGAGTGTGCGGGCACTCAGCCGGCCAGAAGGGTGGGATGCGCAAGCTGGG
711 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * * * * *
17595102 GATCGACCTGGTCCCTCTCTGTGTGCTGTCAATCCTGCTGCCACAACCCTTGGTCCAGTCTAATC
776 GATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATC
* * * ** *
17595167 ATAGACTGGCAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAAGCAGAC
841 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * * *
17595228 GGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCTGTGGATCGATAGGGTGATTGGTG
1 -GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17595293 GGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17595358 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCATGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
** * * * * * *
17595423 TCAAAATTTTTTGCGATTCGAGATTTTTTAAAATTTTTTGGGAAGGCGTTTTGGCCCCAAACTTG
195 TTGAAACTTTTTACGGTTCG-GGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
17595488 GTAGACGTGAT-CTTGTATTTTTGTAGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* ** *
17595552 CATGATTTTACGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
17595617 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
17595681 GGCCAATATAAGGGCCAAGTACCAGCAGCCATTGCACATCATGTGCGCACACCCCCCCGGCCTCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * *
17595746 TCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
519 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAG-CGATGGTGCCCCG
* * ** * *
17595811 GCGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCAGTCCG
583 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * *
17595876 ATCCGATATTAGACTGGGAATGAACTCCGTAAGCTTAGACTTGGAATGAACTCCGTAAGCTTAGA
648 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT-A---T-G-
* * * * * * *
17595941 CTTGGAATGAACTTCGTATGCCTACGTCAAACCACAAATGAGCGTGCAGGCGTTCAACCGACCAG
707 CCT--AA-G----TC--A-ACCCACG---AA--AC----GAGCGTGCGGGCGCTCAGCCGGCCAG
* * * ** * * * * *
17596006 AGGGGCAGGATGCGCAATCTGAAGATCGATCGGGCCCCCCTTTGTGTGCTGCCAATCCTGCTACC
753 AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
** * * * * * * *
17596071 GCAACGTTCAGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGGCTAAGCCAACAGACGA
818 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
17596136 AACGAGTGGGCGGG--TG-
883 AACGAGCGGGCGGGCAGGC
* *
17596152 GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGG
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
17596217 GTTTAGGCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
17596282 GGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACAACTCGATTTT-TATTTTTCACGATTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-ATTTTCTATTTTTCATGATTT
** * * * *
17596346 TCAAAACTTTTTATGATTCGGGATTTTTTCAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACGTG
195 TTGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
17596411 GTAGACGTGATCCTTGTATTCTTATTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
17596476 CAA-ATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
17596540 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
17596605 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GCCCCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * ** * * ** * *
17596669 CCGATCGTCGAAAACCCAATTTCGCCAGTCAGGTTCTCTAGTGATGCTCGGACGATGGTGCCCCG
519 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAG-CGATGGTGCCCCG
* * * * * * * * ** *
17596734 TCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCTGAATGTGCTGTCGTAAGCCTCAATCTT
583 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * *
17596799 GTCCGATCTTAGACTGGGAACGAACCCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
648 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** * * * *
17596864 TCAACCCACGAAACAAGCGTACAGGCGCTCAGCTAGCCAGATGGGCAGGATGCGCAAGCTGAGGA
713 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
** * * * * * * * * *
17596929 TCGGCCAGGTCCCCCTCTGCATGCTGTCGATCCTACTACCACAACCCTCAGTTCAGTCTGATCTT
778 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* *
17596994 AGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCAGGC
843 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * *
17597053 GTGCGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTG
1 G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
17597118 GGTTTAGGCACATCTT-ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17597182 TGGTCCCTTAAGCCTTCACATGAAGTTTCGTGGCAAGACGACTCATTTTCTATTTTTCATGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
* ** * * * *
17597247 TTTAAACTTTTTGTGATTCAGGGTTTTTTATAATTTTTTGGGAAGGATTTTTGGCCCCAAACTTG
195 TTGAAACTTTTTACGGTTC-GGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
17597312 GTAGCCGTGATCCTTATATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTGGAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
17597377 CAAGATTTTGGGACCATTTGAAAAAGGTG-CCCCATTTCAGACACTTTAATGGCTACTGCCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
17597441 AACCTGTAAAATCTCTAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * *
17597506 GGCCAATATAAGGGCCAAGTACTAGTAGCCATCGCACATCATGTGTGCACACCCCCCCGACCCCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
** *
17597571 CCGATCGTCAAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTAGCGATGGTGCCCCG
519 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC-AGCGATGGTGCCCCG
** * * * * *
17597636 GTGAAGAAAAATGCGGCACCAGCAAATGTCCAAGCCCAGTATGTGCTGCCACAACCCTCGGTCTG
583 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * *
17597701 GTCCAATCTTAGACTCGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATACCTAAG
648 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
17597766 TCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGA
713 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * **
17597831 TCGATCGGGTGCCCCTCTGCGTGCTGTCGATCTTGCTACCGCAACCCTCGGTCCAATCTGATCTT
778 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
*
17597896 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGC-GGAC
843 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGG-C
* * * * * * *
17597955 AGACGGGCACTATGCGGGCCACAGAGACGGGAAGCGCAAGCCGTAGATTGATAGGGTGGTAGGTG
1 -GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
17598020 GGTTTAGGCACATCTTCATATTTCGGCATCCCAATGCCATTTTTATGGCTTGTAAATTCGTACAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
17598085 CGATCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGAC-ACTCGTTTTCTATTTTTCATGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
* * * * * *
17598149 TTGAAACGTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCTAAACTTG
195 TTGAAACTTTTTACGGTTC-GGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
17598214 TTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATTGAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
17598279 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
17598344 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
17598409 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCTCCCGACC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC-CCGGCCC
* *
17598474 CCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCAGCAATGGTGCCC
517 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT-CAGCGATGGTGCCC
* * * * *
17598539 CGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGATC
581 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
17598604 CGGTCCGATCTTA-ACTGGGAATGAACTCTGTATGCTTAGACTGGAAATGAACTCCGTATGCCTA
646 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * ** * ***
17598668 AGTCAACCCACGAAACAAGCG-GACGGGCACTCAGTCGGCCAGAAAGGCGGGATGTGCAAGCTAA
711 AGTCAACCCACGAAACGAGCGTG-CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
** ** * * * * * *
17598732 GGATC-AGTCGGGTCCCCCTCTATGCACTACCAATCCTGCTACTGCAACCCTCGGTCTGGTCCGA
775 GGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGA
* * *
17598796 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA----GCGAGC--G-
839 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * * *
17598852 GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTTGTACGT-G
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* ** * **
17598916 GTTTAGGCGCATCTTCATATTTCTGAATGCAAATGGTATTTTTATGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
17598981 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGA-TTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
* * * *
17599045 TCAAA-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
196 TGAAACTTTTTACGGTTCG-GGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
*
17599109 TAGACCTGATCCTTGTATTTTT-TCTGGCATGCACAAAAAAAATT-AGCTAAAAACTCGAAGTGT
260 TAGACGTGATCCTTGTATTTTTGT-TGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * * * * *
17599172 ACAATATTATGTGTCCATTTGAAAAACGTTTCCCCATTTCAAACACTTTAATGGCTACTGCCAGC
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
17599237 AAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
17599302 GGGCCAATATAAGGGCCCAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGGCCCC
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
*** * ** * * * * * *
17599367 TTTGATCG-CAAGAACCCCAATGCCACCTGTCAGGTTCTCTGGCGATGCTCCGGTGATGTTCCCC
518 CCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT-CAGCGATGGTGCCC
* *
17599431 CGACGAAGAAAAATGTGGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC
581 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* *
17599492 -AGTCCGA---T---CT--G-AT---CT---TA-G--T---CT----A-G------GAATGCCTA
646 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
17599524 AGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGAGGCGGGATACGCAAGTCGGG
711 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * ** * * * * * * *
17599589 GATCGGTC-GATCCCTTTTTGCGTGCTGCTGATCCTGCTACCACAACCCTCAGTCTGATCTGATC
776 GATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATC
* * *
17599653 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGA----GC-GG-ACG-
841 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * * * * * ** *** **
17599707 GGC-GG-AC-A-GCCAGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAACCGGGTCCCCATCTG
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-GGTAGGTG
* * * * ** *** ** * * * **
17599768 TGTGCT-GTCGATCCTGCTGTCGCAACCCT-CGAT-CCGGT-CTGA-TCTTA--GATTGGGAA-T
65 GGT-TTAGGC-A-CAT-CT-TCATATTTCTGCG-TGCCAATGC-CATTTTTATGGCTTGTAAATT
* ** * * ** ** *** ** *
17599825 GA-ACTCTGTATGCC-TAAGCCAACCGACGAAACGAGCGGC-TGGACGGGCGGGCGAGCACTACA
123 CATACAATG-GTCCCTTAAGCC-TTC-ACGTGA--AGTTTCATGG-C---AAGAC--G-ACT-CA
**** ***** *** * * ** * *
17599887 CAGGCTA-GAGAGATGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
175 TTTTCTATTTTTCATGATTTTTG-AA-AC-T---T-TTTACGGT--T---CGGGTTT-------T
* * * * * * *** ** * * * *
17599951 CTTCATATTTTTGCGTGCCAATGCCAATTTTTTGCTTGTAAA-TTCATACA-ATGGTCCCT-TA-
221 -TTAAAATTTTTTCG-G--AA-G--GAGTTTTGGC-CCCAAACTTGGTAGACGTGATCCTTGTAT
* * *** ** * * * * * *
17600012 -------AGCATTCACGTGAAGTTTCACGGC-AAGACGACTCGTTTTCTATTTTTCACGATTTT-
278 TTTTGTTGGCATGCACAAAAAAATTCA--GCTAA-A-AACTCG-----AAGTGTACAAGATTTTG
* ** *** * * * **
17600068 TGAAACCTTTTG----CGGT-TCGAGATTTTTTA-AAATTTTTTTGGAA-GGCATTTTGGC-GCC
334 TG--ACCATTTGAAAAAAGTGTCCCCA--TTTCAGACA---CTTT--AATGGC-TACTGGCAG-C
* * * * * *** * * * * ** ** *
17600125 AAACTTGGT-AGAT-GCGAA-CCTCGTATT--TTTGTTG-GCA-TGCACAAAAAAATTCAACTAA
388 AAACCT-GTAAAATCTCAAATGCTC-T-TTAAGGGGGTGTG-AGTTCTC---GAGGTTTGA-T-G
*** * * ** * ** * * * ** ** * * *
17600183 AAACATGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTCAGACACTTTAAT
444 AGGGAT-AGGGGGCCAATA-TAAG-GGCCA--AG-TACCAG-CAC-CCA--TC-G-CAC-ATCAT
* *** ** *** ****** * ** * ** * *
17600248 G-GC-TACTTGCAGCAAACCTGTAAAATC-TC-AAATGCTCTTTAAGGGGGT--GTGA-GTACTC
496 GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAA--C-C-CCAATGCCGTCGGTCAGGTTCTC
** ** * * * * * * * * * * *
17600306 AAAG-TTTGATGAGGGATAGG-G----GGCCAATATAAAGGCCAAGTACCAG--CA--CCCGTGG
557 -CGGCGATGCTCAGCGAT-GGTGCCCCGACGAAGAAAAATG-C-GGCACCAGCACATGCCCG-AG
* * * * * * * * ** *** * *
17600361 CACATCATGTAC-G-CACACCCCCCGGCCCT--CCCGATCGTCGGAAC-CCTAATG-CCGTCGGT
617 CCCAGCATGTGCTGCCGCAACCCTCGG-TCTGGTCCGATC-TTAG-ACTGGGAATGAAC-TCCGT
** * ** **** * * ** * *** * *
17600420 CGGGTT-CTCCAACAATG--CTCCG---G-CGATGGT--ACCCTGGTGAA-GAAAAATTC-GAC-
678 ATGCTTAGACTGGGAATGAACTCCGTATGCCTA-AGTCAACCCACG-AAACG-AGCGTGCGGGCG
* * * ** * * * * * * *
17600473 ATCAGCACATGCCCGA-GCCCAGCATGTGCTA-CC--GCAACGCTC-GG------TCTG-GT--T
740 CTCAGC-C-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT
* * * **** * * * *
17600524 --CGATCTTAGATTG--GGAATGAAC--TCC-ATATG--CTTAGACTAGGAATGAACTCCGTTTG
803 GCCGATCCT-G-CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17600580 CCTAAGTCAACCCACGAAACGAGCGTGC--G--GG-
866 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * * * * * * *** *** *
17600611 TGC--TCA--A--CCGGCCAGAGAGGCAGGATGCGTAAGTCGGGGATCGGCCGGGACCT---TGT
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * * * * * ** ** ** *
17600667 CTGT-GTC-C-T-GTC-GA-TCCTGC-TGCTACAA--CCCTTAGTCCGG-TCTG-ATCTTAGACT
66 GTTTAGGCACATCTTCATATTTCTGCGTGC--CAATGCCATTTTTATGGCT-TGTAAATT-CA-T
* ** * * * * ** * * * * **
17600721 AGGAATGAACTCCGTATGCCTAAGCCAAC-TGACGAAATGAGCGGGCACTACGCCGGC-CAGAGA
126 A-CAATGGTC-CCTTAAGCCT---TC-ACGTGAAG-TTTCA--TGGCA--A-GACGACTC--ATT
* * * * * * ** * *** ** * ** * * * * *
17600784 GT-TAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACGTCTTCATATTTC
177 TTCTA--TTTTTCATG--AT-TTTTGA-AACTTTTTA---CGGTTCGGGT--TTTTTAAAATTTT
* * * *** ** * * *
17600848 TACATGCCAACGGCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGA
231 TTC--G-GAA-GG-A-GTTT-TGGC-CCCAAA--C-T----TGGTAGACGTGATCCTT---GT-A
** ** * ****** * **** * * *
17600912 AGTTTCATGGCAAG-ACGACTCGTTTTCTATTTTTCATAATTTTCGAAACTTTTTGCGGTTCAGG
277 TTTTTGTTGGCATGCAC-AAAAAAATTC-A----GC-TAA------AAACTCGAAG-TGTACAAG
* ** ** *
17600976 ATTTT-TTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTGGACATGAGC-CTTGT-AT
328 ATTTTGTGACCA----TTTGAAAAAAG---TGTCCCC--A-TT--T---CA-GA-CACTT-TAAT
*** * * * * ***
17601038 TTTTATTGGCTTGCACAAAACAACTCG--AAGTGTACAAGATTTTG-TGACCATTTGAAGAAAGT
375 GGCTACTGGC-AG--C-AAAC--CT-GTAAAATCT-CAA-A---TGCT---C-TTT-AAGGGGGT
** * * ** * ** ** * * *** * *
17601100 GTCCCCGTTTTAGACACTTTAATG-GCTACTA-GTAGCAAACCTGTAAAATCTCAAATGCTCTTT
423 GT--GAGTTCTCGA-GGTTTGATGAGGGA-TAGGGGGCCAA--TATAAGGGC-CAAGTAC-C---
****** * ** * * * ** ** ****** *** * * **
17601163 AAGGGGGTGTGAGTTCTTAAGGTTTTG-TGA-GGGATAGG--GGGCCAAT-AT---AAGGGCCAA
477 -AGCACCCAT-CGCACATCATG-TGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAA-CCCCAA
* *** * * ** * * * ** * * ** *
17601220 GTACCAG-CACCCATCGTACATCATGTG-TGCACACCCCCTGGTCCCCCGGTCGTCGGAACCCCA
538 -TGCC-GTCGGTCA-GGTTC-TCCGGCGATGCTCA-GCGATGGTGCCCC-GACG-AAGAA---AA
* * ** ** ** * *
17601283 TTGCCGC-CGGTCAGGTTCTCCGACGATGCCCCGA-CGAAAAAAAATACGGCAC-CAACACATGC
593 ATGCGGCAC---CA-G-----C-AC-ATG-CCCGAGC-CCAGCATGTGCTGC-CGCAAC-C---C
*
17601345 CCGAGCCTAGCATGTGCTACCGTAACCCTCTGTCTGATTCGATCTTAGACTGGGAATGAACTCCG
640 TCG-G--T--C-TG-G-T-CCG--A---TC--T-T-A---GA-C-T-----GGGAATGAACTCCG
* * * * *
17601410 TATGCTTAGACTAGGAATGGACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGAGTGCT
677 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * * * * *
17601475 CAGCCGGCCAGAGGGATGAGATGCACAAGCCAGGGATCGATCGGGTCCCCCTTTGCGTGCTACCG
742 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCG
* ** * * * *
17601540 ATCTTGCTGCCATAACCTTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
807 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
17601605 CCAATCGACGAAACGAGCGGGCAGGC--G-
872 CCAACCGACGAAACGAGCGGGCGGGCAGGC
* * * *
17601632 GGAGGGCACTACGACGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGG
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
17601697 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
17601762 GGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCTAGACGACTCATTTTCTCATTTTT-ACGATTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT-ATTTTTCATGATTT
* * * * * *
17601826 TTGAAACTATTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTTGCCCAAAACTTG
195 TTGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
17601891 GAAGACGTGATCCTTGTATTTTTTTTAGCATG-ATCAAAAAAATTCAGCTAAAAACTCGAAGTGT
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * *
17601955 ACAACATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATAGCTACTGACAGC
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
17602020 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * * *
17602085 GGACCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGTGCACACCCCCCTGACCCC
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * * *
17602150 CCCGATCGTCAGAACCCTAATGTCGTCGATCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCC
518 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT-CAGCGATGGTGCCCC
* * *
17602215 GACGAAGAAAAATGCTGCACCAGCACATGCTC-AGCCCAGCATGTGCTGTCGCAACCCTCGGTCT
582 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* * * * * *
17602279 GGTCTGACCTAAGACTGGGAATGAACTCCGTATGGTTAGACTGCGAATGAACTCCGTATGCTTAA
647 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* ** *
17602344 GTCAACCCACGAAAC-AGTGTGTTGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGG
712 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * ** *
17602408 ATTGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATTTGGTCTAATCT
777 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * * *
17602473 TAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGATGAAATGAGCGGGCGGGC-GAAC
842 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAG-GC
* * *
17602533 GAGCGGGCACTACGCCGG-TATGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTTGTAAGT
1 G-GCGGGCACTACGCCGGCCA-GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
17602597 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
64 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
17602662 ATGGTCCATTAAGCCTTCAGGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
129 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATT
* * *
17602727 TTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
194 TTTGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
17602792 GGTAGACGTGATCCCTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCT-AAAACTCGAAGTGT
258 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *** *
17602856 ACAAGATTTTGTGACCATTTGAAAAGAGTGTTTGCATTTCAGACACTTTAATGGCTACTGGCAGT
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
17602921 AAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
17602986 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTTCGCACA-CCCCCTGGCCCC
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
** * *
17603050 CCCGATCACCGGAA-CCCAATGCCG-CTGGTTAGGTTCT-C--C---G---A-CGATGGTACCCC
518 CCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCAGCGATGGTGCCCC
* * * *
17603103 GACGAAGAAAAATGTGGCACCAGCACATGCCGGAGCCCAGCATGTGCTGCCACAACCCTCAGTCT
582 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* * *
17603168 GGTCCAATCTTAGAATGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
647 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * ** * *
17603233 GTCAACCCATGGAACGAACGTGCGGGCGCTCAGCCGACCAGAGGGAAGGGATACGGAAGCCGGGG
712 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * **
17603298 ATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGTCGCAACCCTAC-GTTCGGTCCAATC
777 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT-CGGTCCGGTCTGATC
* * *
17603362 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGA----GCGGGC--G-
841 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * * * *
17603416 GGCGGGCACTATGCCGACCAGAGATAAGGGATGCGCAAGCCGTGGA-CTGATAGTGTGGTAGGTG
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC-GATAGGGTGGTAGGTG
* * * * * *
17603480 GGTTTAAGAACAACTTAATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
17603545 TGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTGACGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
** * * *
17603610 TCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAAACTTG
195 TTGAAACTTTTTACGGTTC-GGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
17603675 GTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACACGAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
17603740 CAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTCTAATTGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
17603805 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
17603870 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* ** * * * * * * * *
17603934 TCGATCACCAGAACCCCAATGCCGCCGATTAGGTTCTCCGAG-GATGATCCGGTGATGTTGCCCC
519 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-GCGATGCT-CAGCGATGGTGCCCC
* * ** *
17603998 GATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAGGCCTCAGTCT
582 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* *
17604063 GGTCCCATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCTTATGCCTAA
647 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * *
17604127 GTCAACCCATGGAATGAGTGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGTGCAAGTCGGGG
712 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * ** * * * *
17604192 ATCGGTCGGGTCCCCCTCTGCATGCTGGCGATCCTGTTGTTGTAACCCTCGGTCTGATCCGATCT
777 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * * *
17604257 TAGACTGAGAATGAACTCCGTATGCCTAAGCCATCTGATGAAACGA--------GC--G-
842 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
*
17604306 GGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
17604371 GTTTCGGCACATCTTCATATTTATGAGTGCCAATGCCATTTTTATGGCTGGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
17604436 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAGTTTCTATTTTTCACGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
** *
17604501 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGG
196 TGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
17604566 TAGACATGATCCTTGTATTTTTTTTGGCTTGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* ** *
17604630 AAAATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCATACACTTTAATGGCTACTGGCAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
17604695 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
17604760 GCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCTCC
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * * ** *
17604824 CAATC-ACTAGAACCCCAATGCCGTCGGCCAGGTTCTCTAGCGATGCTCCGACGATGGTGCCCCG
520 CGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAG-CGATGGTGCCCCG
* * * *
17604888 ACGAAGAAAAATACGGCACTAGCACATGCTCGAGCCCAGCATGTGTTGCCGCAACCCTCGGTGC-
583 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CT
* * * * * **
17604952 AGTCCAATATTAGACAGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTATATGCCTAA
647 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
17605017 GTCAACCCACGGAACGAGCGTGCGGGCGCTCAACCGACCAGACGGGCAGGATGCGTAAGTCGGGG
712 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * *
17605082 ATCGATCCGGGTCCTCTTTTGCGTGCTACCGATCCTGCTGCCGTAACCCTCGATCC-ATCTGATC
777 ATCGAT-CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATC
*** * * * **
17605146 TTAGACTGGGAATGAACTCCGTATGCTTATACTAGGAATGAACTCCGTATGTCTAA-GTCAACCC
841 TTAGACTGGGAATGAACTCCGTATGC-----CTA--AGCCAA--CCG-ACG--AAACG--AGCGG
* **
17605210 AC-GAAACGAGC
892 GCGGGCA-G-GC
* * * * * * * * ****
17605221 GTGCGGGCGCT-CAACCGGCCAGCGGGTCGGGATGCGCAAGTCAGT-AATCAACTA-GGTCCCCC
1 G-GCGGGCACTAC-GCCGGCCAGAGAGACGGGATGCGCAAG-CCGTGGATCGA-TAGGGT-GGTA
** * * * * **** * * * * *
17605283 TCTGCGTGCTA--C-CGATC--C-TACTGCTGAAACCCTCAGTCTGGTCCAATCTTA-GACTAG-
61 GGTGGGT-TTAGGCAC-ATCTTCATATTTCTG-CGTGC-CA--AT-G-CCATTTTTATGGCTTGT
* * ** * * ** *** *
17605340 GAA-TGA-ACTCTGTATGCC-TAAGCCAACCGACGAAATGAGCGAGCGGGCGGGTGGGCACTACG
118 AAATTCATACAATG-GTCCCTTAAGCC-TTC-ACG---TGA---AG-TTTC--AT-GGCA--A-G
* * **** * *** *** * ** * * * **
17605402 CCGGC-CAGAGAGACGGGA-TGCGCAAGCCGTGGATCAAT-AAAGTGGTAAGTGGGTTTAGGCAC
167 ACGACTC--ATTTTC--TATTTTTC-A----T-GATTTTTGAAACTTTTTA--CGG-TTCGG-GT
* * * * * * * * * *** ** * *
17605464 ATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTA
218 TTTTTAAAATTTTTTC--G-GAA-G-GA-GTTT-TGGC-CCCAAA--C-T----TGGTAGACGTG
* ** ** * ****** ** *
17605528 AGCCTTCACGTGAAGTTTCATGGCAAG-ACGACTCCTTTTCTATTTTTTAAGATTTTTGAAACTT
268 ATCCTT---GT-ATTTTTGTTGGCATGCAC-AAAAAAATTC-A---GCT-A-A------AAACTC
*** * * * * ** * ** *
17605592 TTTGCGGTTCAGGATTTT-TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT-AGATG
316 GAAG-TGTACAAGATTTTGTGACCA---TTTGA-AAAAAG---TGTCCCC--A-TT--TCAGA--
* *** ** *
17605655 TGATCCTTGT-ATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAT
366 -CA--CTT-TAATGGCTACTGGCA-G--C-AAAC----CTG-T-AAAA-TC------T-CAA-A-
**** * ** * *
17605719 TTTG-TGACCATTTGAAAAAAGTGTCCCCA-TTC-CAGACACTTTGATGCCTCCTGGCAGCAAAC
407 --TGCT---C-TTT-AAGGGGGTGT---GAGTTCTC-GA-GGTTTGATG-----AGG--G-ATA-
**** * * *** *** * *
17605781 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATG-AGGGATAGGAGG
451 --G--GGGGC-C-AA-----TATAA------G-G-G--CCA-A-GTACCA-GCACCCATCGCA--
* * **
17605845 CCAAT-ATAAGGGC-CAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCCGGCCCC
490 -C-ATCAT--GTGCGC-A-CACC--C-CCC-CGG---------------------------CCCC
* * * * * * *
17605908 CCCGATCATCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTTCGGCGATTGTGCCTC
518 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC-TCAGCGATGGTGCCCC
* * * * * * ** * *
17605973 GTCGAAGAAAAATACGACACCAGCATATGCCCGAGCCAAACATGCACTACCGTAACCCTCGGTCT
582 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* * * * *
17606038 GGTCTGATCTTAGACTGGGAATGAGCTCTGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAT
647 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * *
17606103 GTAAACCCACAAAACGAGCGTGTGGGCGCTTAGTCGGCCAGAAGGGCAGGATGTGCAAGCCGGGG
712 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * *
17606168 ATCGGTCAGGTCCCCCTCTGTGTGCTGCCGATCTTGCTACTGCAACCCTCGGTCTGGT-TCGATC
777 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT-GATC
* * * ** *
17606232 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAGCCGATGAAACAAGTTGGCGGGCGGGC
841 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * *
17606293 GGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTG
1 -GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
17606358 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATGCAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
** ** *
17606423 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATAACTTGTTTTCTATTTTTAATGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
* * * * *
17606488 TTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAATCTTG
195 TTGAAACTTTTTACGGTTCG-GGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
17606553 GTAGACGTGATCCCTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
259 GTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
17606618 ACAAGATTTTGTGACCATTTGAAAAAAATGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGC
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
17606682 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGA-GTTTGATGA-GGATA--
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
17606742 GGG-CAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGCACACCCCCCCGGCCCC
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * *
17606806 CCCGATCGTC-GAAACCCAATGGCGCCGGTCAGGTTCT----C--TG---A-CGATGGTGCCCCG
518 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGCGATGGTGCCCCG
* * * **
17606860 ACGAAGAAAAATACGGCACGAGCACATGCCGGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCC
583 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * *
17606925 ATCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAG
648 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*
17606990 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGC-CAAGCCGGGGA
713 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * *
17607054 TCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGTCGCAACCCTTGGACCGGTCGGATCTT
778 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* *
17607119 AGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGC--G-
843 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * * * * * * * *
17607175 AGCGGGCACCACGCCAGCCAGAGAGACAGGATGCGAAAGCTGTAGATCGATCGGGTGGTAGTTGG
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
17607240 GTTTAGGCACATCTTCATATTTCTGTGTGCTAATGCCATTTTTATGGCTTGTAAATTCATAC-AT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
17607304 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGA-GACTCGTTTTTTATTTTTCATGATTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GACGACTCATTTTCTATTTTTCATGATTT
* * * *
17607368 TTGAAACATTTTGCGGTTCGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG----AAACTTGG
195 TTGAAACTTTTTACGGTTCGGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
17607429 TAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTAT
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
17607494 AAGATTTTGGGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACCGGCAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
17607559 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTATTGAGGTTTGATGAGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
17607624 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCCGACCCCT
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCC
* * * *
17607689 CCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCG
519 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAG-CGATGGTGCCCCG
* * * ** *
17607754 ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGCAACCCTTAGTCCG
583 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
** * * *
17607819 GTTTGATCTTTGACT-GGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
648 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * **
17607883 TCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGATGA
713 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * ** * *
17607948 TCGA-CTGGGTCCCCCTCTACGTGCTGCCAATCCTGCGGCTACAACCCTCGATCCGATCTGATCT
778 TCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * *
17608012 TAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGC
842 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * * * **
17608072 GGTTGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGCCATCAATCGATAGGGTGGTAGGTG
1 GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * * * * *
17608137 GGTTTAGGCAGATCTTCACATTTTTGTGTGCCGATTCCATTTTTATGGCCTGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
17608202 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCACGATTC
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
* * *
17608267 TCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGCCCCAAACTTG
195 TTGAAACTTTTTACGGTTCG-GGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
17608332 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* **
17608397 CAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACCCGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
17608462 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
17608527 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCATGGCCCT
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCC
* * * * * *
17608592 CTCTATCGCCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCC
518 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT-CAGCGATGGTGCCCC
* * *
17608657 GATGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC-
582 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
17608717 -G---G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
647 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
17608761 GTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAAAGGGGCGAGATGCGCAAGCCAGGG
712 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * *
17608826 ATCGGTCGGGTCCCCCTCTGTGTACTACCGATCCTGCTGCCGCAACCCTCGATTCGATCTGATCT
777 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * *
17608891 TAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCA---
842 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* * *
17608948 GGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTTGGTGG
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* **
17609013 GTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
17609078 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACAACTCGTTTTCTATTTTTCACGATTCT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
** *
17609143 CAAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGG
196 TGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
17609207 TAGATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTGAAAACTCGAAGTGTAG
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
17609271 AAGATTTTGTGACTATTTGAAAAAAGTGTCCTCATTACAGACACTTTAATGGCTACTGGCAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
17609336 ACCTGTAAAATCTCAAATGCTCTTTGA-GGGGTGTGAGTTCTCGAGGTTTGCTGAGGGATGGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGG
*
17609400 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGG-CCCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * * *
17609464 CTGATCGCCGGAACCCCAATACCGTCGGACAGGTTCT-C--C---G---A-CGATGGTGCCCCGG
519 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGCGATGGTGCCCCGA
* * * ** * * *
17609519 CGAAGAAAAATACGACACCAACACATGGGCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCCGG
584 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * *
17609584 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTTCATATGCCTAAGT
649 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
17609649 CAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGACCAGA-----GGGATGCACAAGTCGGGGAT
714 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * * * * *
17609709 CGGCCGGGTCCCCTTCTGCGTGCTGCTGATCCTACTGCCGCAACCCTCAGTTCAGT-TCGATCTT
779 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTT
* ** ** * * *
17609773 AGACTGGGAATGAACTCCGTATGCCTAAGCAAAATGACGAAACGAGCATGCGAGCGGGTG
843 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGG-C
* * *
17609833 GGCGGGTACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGT
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
17609898 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
17609963 GGTCCCTTAATCCTTCAAGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
** * * *
17610028 CAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATGG
196 TGAAACTTTTTACGGTTCG-GGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
17610093 TAGACATGATCCTTGTACTTTTGTTGGCATCCACAAAACAATTCAGCTAAAAACTCGAAGTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
17610158 GAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
17610223 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
17610288 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCC-GACCCAC
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * * * *
17610352 CAATTGTCAGAACCCTAATGCCGCCGATCAGGTTCT-C--C---G----GCGATGGTGCCCCGAC
520 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGCGATGGTGCCCCGAC
* * *
17610407 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCTGCATGTGCTGCCGTAACCCTCGGT-TCGG
585 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GG
* *
17610471 TCTGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
649 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
17610536 AAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCG-ATGGCCGGGGA
714 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA-AGCCGGGGA
* * * * * * * **
17610600 TCGATCGAGTCCCCCTCTCCGTGCTACCGATCCTGCTGCTGCAACCATCAGTCTGGTCCAATCTT
778 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* * *
17610665 AGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAACGACCGGACGGGC--G-
843 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
* ** * **
17610721 GACGGGCACTACATCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGCATGGTAGGTGG
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
17610786 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
17610851 GGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAGGACGACTC-GTTTCTATTTTTCATGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
* * * *
17610915 TGAAACTTTTTACGGTTTGGGATTTTTTTAAATTCTTTT-GGAAGGCGTTTTGGCCCCAACCTTG
196 TGAAACTTTTTACGGTTCGGG-TTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
17610979 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTC-AGAGTGT
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGT
*
17611043 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTGGCAGC
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
17611108 AAACCTGTAAAATTTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
388 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
17611173 GGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACA--CCCCTGGCCCC
453 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * * *
17611236 CCCGATCATCGGAACCCTAATGCTGTCGATCAGGTTC-AC--CG--G-T----GATGGTGCCCCG
518 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGCGATGGTGCCCCG
* * * * * * * *
17611291 ACGAAGAAAATTGCAGCACCAGCACATGCCTGAGCCCAGTATGTGCTACGGTAACCCTCAGTCTG
583 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * *
17611356 ATTCGATCTTAGTCTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
648 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *** * *
17611421 TCAATCCATGAAACGAGCGTATTGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
713 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * *
17611486 TCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGTTGCCGCAACCCTCGGTCCTGTCCGATCTT
778 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* ** * *
17611551 AGACTGAGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACAAGCCGGCGGGC-GTGC
843 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAG-GC
* *
17611610 AGGCGGGCACTACGTCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCAATAGGGTGGATCGAT
1 -GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-C------C------GTGGATCGAT
* *
17611675 AGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
52 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* *
17611740 TAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
117 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
* * * *
17611805 TTTTTTATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGTATTTTT
182 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * *
17611870 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAATTTAGCTAAA
246 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
17611935 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTACTG
311 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
17612000 GCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAAGGGGTGTGAGTGCTTC-AGCTTT
376 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTT
*
17612064 GATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACA
440 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* ** * *
17612129 CCCCCCTGGCGTCCCCGATCGTCGGAAACCCAATGCTGTCGGTCAGG-T-T----C--T-CT-AG
505 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAG
*
17612184 CGATGGTGCCCCG-CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
570 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * * * *
17612248 AACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAAGAACT
635 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
17612313 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAAGGGCTGGATG
700 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * ** * *
17612378 CGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTATCGTAACCCTCAGT
765 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT
* * * *
17612443 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTCTGCCTAAGCCAACTGACGAAACGAGGGGGCG
830 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
**
17612508 AACAGGC
895 GGCAGGC
* * * * ** *
17612515 GGGCGGGCTCTACGCCGGCCAGAGAGACAGGAT--TCAAGCCATGGATCGATATTGTGGTAGGTA
1 -GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
17612578 GGTTTAGGCACATGTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17612643 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
** * * *
17612708 TCCAAACTTTTTATGATTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
195 TTGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * *
17612773 GTTGACGTGATCATTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGATGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
17612838 CAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTACTGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * * *
17612903 AACCTATAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTGCTTGAGCTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * **
17612968 GGCCAATATAAGGGCCAAATACCAGCGCCCATCACACATCATGTGCGCTCA-CCCCCCGGCATCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * *
17613032 CCGATCGCCGGAAACCCAATGCCGCCTGTCAGGTTCT-C--C---G---AG-GATGGTGCCCCCG
519 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGCGATGGTG-CCCCG
* ** *
17613087 -CGAAGAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
583 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * * *
17613151 GTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTTCGTATGCTTAGA
648 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA-A
* * * *** *
17613216 CTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAA
712 ----G--TCAAC-C------C----AC---G-A--AA---CG-A-GCGT-GC-GGGCGC-T----
** ** *
17613281 CGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGTAAAATGCACAAGCCGGGGATCGATCGGGTCCC
742 C-AGC---C-GGC-CAGAGGGG--C----GGG----ATGCGCAAGCCGGGGATCGATCGGGTCCC
* * * * *
17613346 CTTCTGTGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGA
791 CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
* * *
17613411 ACTCCGTATCCCTAAGCCAACCGACGAAACGAGCGGACGGG--TG-
856 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
** * *
17613454 GGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGATGGTAGGTGG
1 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
17613519 GTTTAGGCACATCTTCATATTTCTGCTTGCCAATACCATTTTTATGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
** * * **
17613584 GGTCCCTTAAGCCTTCACGCAAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
* ** *
17613649 AGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTGG
196 TGAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * * *
17613714 TAGATGTGATCCTTGTATTTTTTTTGCCATGCATAAAAAAATTCAGCTAAAATCTCGAACTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
17613779 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
17613844 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGCGTTCTTGAGGTTTGACGAGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * **
17613909 GCCAATATAAGGGCCACGTACCAGCACCCAGCGCACATCATGAGCGTACA-CCCCCCGG-CCTAC
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
** * * * *
17613972 CGATCACCGAAACCCCAATGTCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
520 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAG-CGATGGTGCCCCGA
* ** *
17614037 CGAAGAAAAATGCGACACCAGCACATGCATGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGG
584 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * * * *
17614102 TCCGATCATAGACTGAGAATGAACTCCGCATGCTTAGACTGGGGATGAACTCCGTTTGCCTAAGT
649 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
17614167 CAACCCACAAAACGAACGTGCGGGCG
714 CAACCCACGAAACGAGCGTGCGGGCG
17614193 GGCGGGTTTG
Statistics
Matches: 15248, Mismatches: 2707, Indels: 2006
0.76 0.14 0.10
Matches are distributed among these distances:
851 44 0.00
852 9 0.00
853 16 0.00
854 7 0.00
855 99 0.01
856 71 0.00
857 7 0.00
858 1 0.00
860 59 0.00
861 7 0.00
862 9 0.00
863 3 0.00
864 2 0.00
865 1 0.00
866 2 0.00
867 2 0.00
868 1 0.00
869 2 0.00
870 8 0.00
871 34 0.00
872 35 0.00
873 171 0.01
874 145 0.01
875 282 0.02
876 18 0.00
877 13 0.00
878 13 0.00
879 226 0.01
880 86 0.01
881 286 0.02
882 310 0.02
883 241 0.02
884 29 0.00
885 334 0.02
886 659 0.04
887 709 0.05
888 276 0.02
889 498 0.03
890 1128 0.07
891 61 0.00
892 226 0.01
893 116 0.01
894 664 0.04
895 234 0.02
896 88 0.01
897 50 0.00
898 414 0.03
899 165 0.01
900 83 0.01
901 578 0.04
902 1191 0.08
903 384 0.03
904 904 0.06
905 519 0.03
906 140 0.01
907 255 0.02
908 14 0.00
909 5 0.00
910 4 0.00
911 7 0.00
912 6 0.00
913 20 0.00
914 7 0.00
915 24 0.00
916 48 0.00
917 24 0.00
918 24 0.00
919 14 0.00
920 11 0.00
921 24 0.00
922 19 0.00
923 530 0.03
924 115 0.01
925 2 0.00
926 17 0.00
927 143 0.01
928 4 0.00
929 8 0.00
930 17 0.00
931 22 0.00
932 17 0.00
933 10 0.00
934 5 0.00
935 25 0.00
936 10 0.00
937 12 0.00
938 35 0.00
939 40 0.00
940 457 0.03
941 7 0.00
942 130 0.01
943 21 0.00
944 9 0.00
945 12 0.00
946 8 0.00
947 18 0.00
948 21 0.00
949 14 0.00
950 129 0.01
951 8 0.00
952 10 0.00
953 12 0.00
954 8 0.00
955 12 0.00
956 4 0.00
957 10 0.00
958 14 0.00
959 9 0.00
960 4 0.00
962 3 0.00
963 11 0.00
964 6 0.00
965 7 0.00
966 1 0.00
967 1 0.00
968 4 0.00
969 12 0.00
970 2 0.00
971 16 0.00
972 10 0.00
973 9 0.00
974 5 0.00
975 11 0.00
976 3 0.00
977 3 0.00
978 12 0.00
979 2 0.00
980 3 0.00
981 12 0.00
982 2 0.00
983 3 0.00
984 14 0.00
985 11 0.00
987 11 0.00
988 2 0.00
990 1 0.00
991 20 0.00
992 12 0.00
993 1 0.00
994 7 0.00
995 2 0.00
996 2 0.00
997 21 0.00
998 22 0.00
999 14 0.00
1000 10 0.00
1001 9 0.00
1002 17 0.00
1003 2 0.00
1004 3 0.00
1005 4 0.00
1006 2 0.00
1007 6 0.00
1008 6 0.00
1009 10 0.00
1010 3 0.00
1011 6 0.00
1012 10 0.00
1013 8 0.00
1014 11 0.00
1015 18 0.00
1016 19 0.00
1017 4 0.00
1018 10 0.00
1019 58 0.00
1020 3 0.00
1021 6 0.00
1023 5 0.00
1024 53 0.00
1025 22 0.00
1026 49 0.00
1027 67 0.00
1028 45 0.00
1029 94 0.01
1030 203 0.01
1031 48 0.00
1032 33 0.00
1033 27 0.00
1034 24 0.00
1035 15 0.00
1036 22 0.00
1037 27 0.00
1038 32 0.00
1039 11 0.00
1040 19 0.00
1041 34 0.00
1042 13 0.00
1043 13 0.00
1044 15 0.00
1045 4 0.00
1046 7 0.00
1047 6 0.00
1048 24 0.00
1049 6 0.00
1050 6 0.00
1051 19 0.00
1052 3 0.00
1053 112 0.01
1054 6 0.00
1055 3 0.00
1056 1 0.00
1057 2 0.00
1058 5 0.00
1059 2 0.00
1061 4 0.00
1062 1 0.00
1064 1 0.00
1065 2 0.00
1068 3 0.00
1069 7 0.00
1070 6 0.00
1071 15 0.00
1072 48 0.00
1073 17 0.00
1074 6 0.00
1075 6 0.00
1076 3 0.00
1077 3 0.00
1079 2 0.00
1081 3 0.00
1085 39 0.00
1086 243 0.02
1087 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
TGAAACTTTTTACGGTTCGGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGCGATGGTGCCCCGACG
AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
Found at i:17598652 original size:26 final size:25
Alignment explanation
Indices: 17598613--17598664 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
17598603 CCGGTCCGAT
* *
17598613 CTTAACTGGGAATGAACTCTGTATG
1 CTTAACTGGAAATGAACTCCGTATG
17598638 CTTAGACTGGAAATGAACTCCGTATG
1 CTTA-ACTGGAAATGAACTCCGTATG
17598664 C
1 C
17598665 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAACTGGAAATGAACTCCGTATG
Found at i:17601426 original size:26 final size:26
Alignment explanation
Indices: 17601388--17601440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17601378 CTGATTCGAT
*
17601388 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17601414 CTTAGACTAGGAATGGACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17601440 C
1 C
17601441 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17603205 original size:26 final size:26
Alignment explanation
Indices: 17603176--17603228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17603166 CTGGTCCAAT
17603176 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
17603202 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
17603228 C
1 C
17603229 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:17605011 original size:26 final size:26
Alignment explanation
Indices: 17604961--17605012 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17604951 CAGTCCAATA
*
17604961 TTAGACAGGGAATGAACTCCGTATGC
1 TTAGACAGGGAATGAACTCCATATGC
*
17604987 TTAGACTA-GGAATGAACTCTATATGC
1 TTAGAC-AGGGAATGAACTCCATATGC
17605013 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCATATGC
Found at i:17605183 original size:26 final size:26
Alignment explanation
Indices: 17605145--17605196 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17605135 TCCATCTGAT
*
17605145 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17605171 CTTATACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17605197 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Done.