Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20060819
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 113000 characters in sequence are not A, C, G, or T
File 99 of 117
Found at i:17605334 original size:185 final size:185
Alignment explanation
Indices: 17604934--17605356 Score: 510
Period size: 185 Copynumber: 2.3 Consensus size: 185
17604924 CAGCATGTGT
* * * * *
17604934 TGCCGCAACCCTCGGTGCAGTCCAATATTAGACAGGGAATGAACTCCGTATGCTTAGACTAGGAA
1 TGCCGAAACCCTCGAT-CCGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAA
* *
17604999 TGAACTCTATATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAACCGACCAGACGGGC
65 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGACGGGC
* * * * * * * * *
17605064 AGGATGCGTAAGTCGGGGATCGATCCGGGTCCTCTTTTGCGTGCTACCGATCCTGC
130 AGGATGCGCAAGTCAGGAATCGAACCAGGTCCCCCTCTGCGTGCTACCGATCCTAC
* * ** *
17605120 TGCCGTAACCCTCGATCCATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTATACTAGGAAT
1 TGCCGAAACCCTCGATCCGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAAT
* * *
17605185 GAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAG-CGGGTC
66 GAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGACGGG-C
* * *
17605249 GGGATGCGCAAGTCAGTAATC-AACTAGGTCCCCCTCTGCGTGCTACCGATCCTAC
130 AGGATGCGCAAGTCAGGAATCGAACCAGGTCCCCCTCTGCGTGCTACCGATCCTAC
* * * *
17605304 TGCTGAAACCCTC-AGTCTGGTCCAATCTTAGACTAGGAATGAACTCTGTATGC
1 TGCCGAAACCCTCGA-TC-CGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
17605357 CTAAGCCAAC
Statistics
Matches: 200, Mismatches: 34, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
183 1 0.00
184 44 0.22
185 141 0.70
186 14 0.07
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (185 bp):
TGCCGAAACCCTCGATCCGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAAT
GAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGACGGGCA
GGATGCGCAAGTCAGGAATCGAACCAGGTCCCCCTCTGCGTGCTACCGATCCTAC
Found at i:17606075 original size:26 final size:26
Alignment explanation
Indices: 17606046--17606098 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17606036 CTGGTCTGAT
* * *
17606046 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17606072 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17606098 C
1 C
17606099 CTATGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17606968 original size:26 final size:26
Alignment explanation
Indices: 17606932--17606984 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17606922 CCCATCCGAT
* *
17606932 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17606958 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17606984 C
1 C
17606985 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17609641 original size:26 final size:26
Alignment explanation
Indices: 17609590--17609642 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17609580 CCGGTCCGAT
* *
17609590 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
*
17609616 CTTAGAATGGGAATGAACTTCATATG
1 CTTAGAATGGGAATGAACTCCATATG
17609642 C
1 C
17609643 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:17610515 original size:26 final size:26
Alignment explanation
Indices: 17610479--17610529 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17610469 GGTCTGATCA
17610479 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
17610505 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17610530 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17611399 original size:26 final size:26
Alignment explanation
Indices: 17611363--17611415 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17611353 CTGATTCGAT
*
17611363 CTTAGTCTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
17611389 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
17611415 C
1 C
17611416 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:17611670 original size:13 final size:13
Alignment explanation
Indices: 17611652--17611681 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
17611642 TGCGCAAGCC
17611652 GTGGATCAATAGG
1 GTGGATCAATAGG
*
17611665 GTGGATCGATAGG
1 GTGGATCAATAGG
17611678 GTGG
1 GTGG
17611682 TAGGTGGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (13 bp):
GTGGATCAATAGG
Found at i:17612297 original size:26 final size:26
Alignment explanation
Indices: 17612268--17612320 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17612258 CCGATCTGAT
* *
17612268 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17612294 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17612320 C
1 C
17612321 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:17612365 original size:905 final size:892
Alignment explanation
Indices: 17605117--17614192 Score: 10788
Period size: 887 Copynumber: 10.1 Consensus size: 892
17605107 CTACCGATCC
* * * * *
17605117 TGCTGCCGTAACCCTCGATCC-ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTATACTAG
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
17605181 GAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGCGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * ** * * * *
17605246 GTCGGGATGCGCAAGTC-AGTAATCAACTAGGTCCCCCTCTGCGTGCTACCGATCCTACTGCTGA
131 GGCGGGATGCGCAAGCCGAG-GATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * * *
17605310 AACCCTCAGT-CTGGTCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
195 AACCCTCGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
17605374 ATGAG-CGAGCGGGC-G--GGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC-CGTGG
259 ACGAGCCG-GCGGGCGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCGCAT-G
* ** * *
17605434 ATCAATAAAGTGGTAAGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTAT
322 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
17605499 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCT
387 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
17605564 TTTCTATTTTTTAAGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCAGAAGG
452 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
17605629 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCA
517 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
17605694 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACT
582 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * **
17605759 TTGATGCCTCCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGA
647 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTCA
*
17605824 GGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
712 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
17605889 GTACACCCCCCCCGGCCCCCCCGATCATC-GAAACCCCAATGTCGTCGGTCAGGTTCTCCGACGA
777 GCACA-CCCCCCTGG-CCCCCCGATCGTCGGAAA-CCCAATGCCGTCGGTCAGG-T-T----C--
* * * * * * * *
17605953 TGCTTCGGCGATTGTGCCTCGTCGAAGAAAAATACGACACCAGCATATGCCCGAGCCAAACATG
831 TGC-TAGACGATGGTGCCCCGACGAAGAAAAATACG-CACCAGCACATGCCCGAGCCCAGCATG
** * * * * *
17606017 CACTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAGCTCTGTATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * * *
17606082 AAATGAACTCCGTATGCCTATGTAAACCCACAAAACGAGCGTGTGGGCGCTTAGTCGGCCAGAAG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * ** * * * * *
17606147 GGCAGGATGTGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGTGTGCTGCCGATCTTGCTACTGCA
131 GGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
* * *
17606212 ACCCTCGGT-CTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAGCCGATGAAA
196 ACCCTCGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* ** * * *
17606276 CAAGTTGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCTG--TGG
260 CGAGCCGGCGGGC-GGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC-GCAT-G
17606339 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
322 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * ** *
17606404 GGATTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATAACTTGT
387 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
17606469 TTTCTATTTTTAATGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTTGGAAGG
452 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * *
17606534 ATTTTTGGCCCCAATCTTGGTAGACGTGATCCCTGTATTTTTTTTTGGCATGCACAAAAAAATTC
517 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTC
* *
17606599 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGT-CCCATTTCAGACAC
581 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
17606663 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTC-TC
646 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTC
*
17606726 -GAGTTTGATGA-GGATA--GGG-CAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGT
711 AG-GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
17606786 GCGCACACCCCCCCGGCCCCCCCGATCGTC-GAAACCCAATGGCGCCGGTCAGGTTCT-CT-GAC
775 GCGCACACCCCCCTGG-CCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTGCTAGAC
* *
17606848 GATGGTGCCCCGACGAAGAAAAATACGGCACGAGCACATGCCGGAGCCCAGCATG
839 GATGGTGCCCCGACGAAGAAAAATAC-GCACCAGCACATGCCCGAGCCCAGCATG
** * * *
17606903 TGCTGCCGCAACCCTCGGTCCCATCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
17606968 GAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* ** * *
17607033 GGCGGGATGC-CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGTCGCA
131 GGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
* * * * * *
17607097 ACCCTTGGACCGGTCGGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
196 ACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * *
17607162 GAGCGGGCGGGC-G-A-GCGGGCACCACGCCAGCCAGAGAGACAGGATGCGAAAGCTGTA-GATC
261 GAGCCGGCGGGCGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC-GCATGATC
* * ** *
17607223 GATCGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTGTGTGCTAATGCCATTTTTATGGC
325 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
17607288 TTGTAAATTCATAC-ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGA-GACTCGTTT
390 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GACGACTCGTTT
* * * *
17607351 TTTATTTTTCATGATTTTTGAAACATTTTGCGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAG
454 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
*
17607415 TTTTGG----AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGC
519 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * *
17607476 TAAAAACTCAAAGTGTATAAGATTTTGGGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTT
584 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * * *
17607541 AATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTATTGAGG
649 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTCAGG
*
17607606 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGT
714 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
17607671 ACACCCCCCCCGACCCCTCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGC
779 ACA-CCCCCCTGGCCCC-CCGATCGTCGGAAACCCAATGCCGTCGGTCAGG-T-T----C--TGC
* **
17607736 TCTGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
834 T-AGACGATGGTGCCCCGACGAAGAAAAAT-ACGCACCAGCACATGCCCGAGCCCAGCATG
* * ** * * *
17607797 TGTTGTCGCAACCCTTAGTCCGGTTTGATCTTTGACT-GGAATGAACTCCGTAAGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
17607861 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * **
17607926 GGCGGGATGCGTAAGCCGATGATCGACTGGGTCCCCCTCTACGTGCTGCCAATCCTGCGGCTACA
131 GGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
* * *
17607991 ACCCTCGATCC-GATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
196 ACCCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * *
17608055 CGAGCGGGCAGGCGGGC-GGTTGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGC-CATCA
260 CGAGCCGGCGGGC-GGCAGG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCGCAT-G
* * * ** * *
17608118 ATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCACATTTTTGTGTGCCGATTCCATTTTTAT
322 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
17608183 GGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCAT
387 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
17608248 TTTCTATTTTTCACGATTCTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTCTCGGAAGG
452 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
*
17608313 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCA
517 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
17608378 GCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
582 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
** *
17608443 TTAATGGCTACCCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCG
647 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTC-
17608507 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
711 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * *
17608572 CACACACCCCCCATGGCCCTCTCTATCGCCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGCGA
776 CGCACACCCCCC-TGGCCC-CCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCT---GCTA
* * * *
17608637 TGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATG
836 -G--AC---GATGGTGCCCCGACGAAGAAAAATACG-CACCAGCACATGCCCGAGCCCAGCATG
17608701 TGCTGCCGCAA-CC-C--T-C-G---G-TC-----C-------G-A-TCCG-AT-CTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
17608740 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAAAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* ** * * *
17608805 GGCGAGATGCGCAAGCC-AGGGATCGGTCGGGTCCCCCTCTGTGTACTACCGATCCTGCTGCCGC
131 GGCGGGATGCGCAAGCCGA-GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * * * *
17608869 AACCCTCGATTC-GATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGACGAA
195 AACCCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
17608933 ACGA-ACGG-GCG-GGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTG--TGG
259 ACGAGCCGGCGGGCGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC-GCAT-G
* * ***
17608993 ATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATTTTTAT
322 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
17609058 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACAACTCGT
387 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * ** *
17609123 TTTCTATTTTTCACGATTCTCAAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTCTCGGAAGG
452 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
*
17609187 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCA
517 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * * *
17609251 GCTGAAAACTCGAAGTGTAGAAGATTTTGTGACTATTTGAAAAAAGTGTCCTCATTACAGACACT
582 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
17609316 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-GAGGGGTGTGAGTTC-TCG
647 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTC-
* *
17609379 AGGTTTGCTGAGGGATGGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
711 AGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * *
17609444 GCGCACA-CCCCCTCGGCCCCCTGATCGCCGGAACCCCAATACCGTCGGACAGGTTCT-C-CGAC
775 GCGCACACCCCCCT-GGCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTGCTAGAC
* * ** *
17609506 GATGGTGCCCCGGCGAAGAAAAATACGACACCAACACATGGGCGAGCCTAGCATG
839 GATGGTGCCCCGACGAAGAAAAATACG-CACCAGCACATGCCCGAGCCCAGCATG
* * *
17609561 TGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGG
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
17609626 GAATGAACTTCATATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGACCAGA--
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * *
17609689 ---GGGATGCACAAGTCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCTGATCCTACTGCCGCA
131 GGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
* * * * * **
17609751 ACCCTCAGTTCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAAATGACGAAAC
196 ACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
** * ** * * *
17609816 GAGCATGCGAGCGGGTGGGCGGGTACTACGTCGGCCAGAGAGACGGGATGCGCAAGC-CGTGGAT
261 GAGCCGGCGGGC-GGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCGCAT-GAT
* * *
17609880 CGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
324 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * *
17609945 CTTGTAAATTCGTACAATGGTCCCTTAATCCTTCAAGTAAAGTTTCATGGCAAGACGACTCGTTT
389 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
** * *
17610010 TCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAG
454 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * * *
17610075 TTTTGGCCCCAAACATGGTAGACATGATCCTTGTACTTTTGTTGGCATCCACAAAACAATTCAGC
519 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
17610140 TAAAAACTCGAAGTGTACGAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTT
584 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
17610205 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
649 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTCAGG
17610270 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
714 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * * * * *
17610335 ACAACCCCCC-GACCCACCAATTGTCAG-AACCCTAATGCCGCCGATCAGGTTCT-C-CGGCGAT
779 AC-ACCCCCCTGGCCCCCCGATCGTCGGAAACCC-AATGCCGTCGGTCAGGTTCTGCTAGACGAT
*
17610396 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCTGCATG
842 GGTGCCCCGACGAAGAAAAATAC-GCACCAGCACATGCCCGAGCCCAGCATG
* * *
17610448 TGCTGCCGTAACCCTCGGTTCGGTCTGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
17610513 GAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * *
17610578 GGCGGGATGCG-ATGGCCGGGGATCGATCGAGTCCCCCTCTCCGTGCTACCGATCCTGCTGCTGC
131 GGCGGGATGCGCA-AGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * * *
17610642 AACCATCAGT-CTGGTCCAATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAA
195 AACCCTCGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** * *
17610706 ACGA-CCGGACGGGCGG-A--CGGGCACTACATCGGCCAGAGAGACGAGATGCGCAAGC-CGTGG
259 ACGAGCCGG-CGGGCGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCGCAT-G
**
17610766 ATCGATAGCATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
322 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
17610831 GGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAGGACGACTCG-
387 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
17610895 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTCTTTT-GGAAG
452 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT-TTTTCGGAAG
* * *
17610959 GCGTTTTGGCCCCAACCTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
516 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
17611024 AGCTAAAAATTC-AGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
581 AGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
17611088 CTTTATTGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTT-AAGGGTGTGTGAGTTC-
645 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGG-GTGTGAGTTCT
*
17611151 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCAT
709 TC-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
17611216 GTGCGCACA--CCCCTGGCCCCCCCGATCATCGG-AACCCTAATGCTGTCGATCAGGTTC-AC-C
773 GTGCGCACACCCCCCTGG-CCCCCCGATCGTCGGAAACCC-AATGCCGTCGGTCAGGTTCTGCTA
** * * * *
17611276 GGTGATGGTGCCCCGACGAAGAAAATTGCAGCACCAGCACATGCCTGAGCCCAGTATG
836 GACGATGGTGCCCCGACGAAGAAAAATAC-GCACCAGCACATGCCCGAGCCCAGCATG
* * * * * * * *
17611334 TGCTACGGTAACCCTCAGTCTGAT-TCGATCTTAGTCTGGGAATGAACTCCGCATGCTTAGACTG
1 TGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * *** *
17611398 GGAATGAACTCCGTATGCCTAAGTCAATCCATGAAACGAGCGTATTGGTGCTCAGCCGGCCAGAG
65 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* *
17611463 GGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGTTGCCGC
130 GGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* **
17611528 AACCCTCGGTCCTGTCCGATCTTAGACTGAGAATGAACTTTGTATGCCTAAGCCAACCGACGAAA
195 AACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
17611593 CAAGCCGGCGGGCGTGCAGGCGGGCACTACGTCGGCCAGAGAGACGGAATGCGCAAGCCGTGGAT
260 CGAGCCGGCGGGCG-GCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-C---G--
*
17611658 CAATAGGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAAT
318 C---A---T-GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
17611723 GCCATTTTTATGGCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
376 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
17611788 AGACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATT
441 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * * *
17611853 TTTTCGGAAGTATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCGTGCAC
506 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
17611918 AAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
571 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
17611983 TTTCTGACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAAGGGGTG
636 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
* * *
17612048 TGAGTGCTTCAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGC
701 TGAGTTCTTCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
17612113 ACATCATGTGCGCACACCCCCCTGGCGTCCCCGATCGTCGGAAACCCAATGCTGTCGGTCAGGTT
766 ACATCATGTGCGCACACCCCCCTGGC-CCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTT
*
17612178 CT-CTAG-CGATGGTGCCCCG-CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
830 CTGCTAGACGATGGTGCCCCGACGAAGAAAAATAC-GCACCAGCACATGCCCGAGCCCAGCATG
* * *
17612239 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
17612304 GAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAAG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * ** *
17612369 GGCTGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTATCGTA
131 GGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
* * * *
17612434 ACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTCTGCCTAAGCCAACTGACGAAAC
196 ACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
** ** * * * *
17612499 GAGGGGGCGAACAGGCGGGCGGGCTCTACGCCGGCCAGAGAGACAGGAT--TCAAGC-CATGGAT
261 GAGCCGGCGGGC-GGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCGCAT-GAT
** * * *
17612561 CGATATTGTGGTAGGTAGGTTTAGGCACATGTTCATATTTCTACATGCCAATGCCATTTTTATGG
324 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
17612626 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
389 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* ** * * *
17612691 TCTATTTTTCACGATTTTCCAAACTTTTTATGATTCGGGATTTTTTAAAATTTTTTCAGAAGGAG
454 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
17612756 TTTTGGCCCCAAACTTGGTTGACGTGATCATTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
519 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
17612821 TAAAAACTAGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTT
584 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * * * *
17612886 ACTGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTGCTTGAGC
649 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTCAGG
* * *
17612951 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCGCCCATCACACATCATGTGCGC
714 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * * *
17613016 TCACCCCCC-GGCATCCCCGATCGCCGGAAACCCAATGCCGCCTGTCAGGTTCT-C-CGAGGATG
779 ACACCCCCCTGGC-CCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTGCTAGACGATG
**
17613078 GTGCCCCCG-CGAAGAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATG
843 GTG-CCCCGACGAAGAAAAATAC-GCACCAGCACATGCCCGAGCCCAGCATG
* *
17613129 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAG
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
17613194 GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
66 GAATGAACTCCGTATGCCTA-A----G--TCAAC-C------C----AC---G-A--AA---CG-
* * *** * ** ** *
17613259 ATGCCTAACTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGTAAAATGCACA
103 A-GCGT-GC-GGGCGC-T----C-AGC---C-GGC-CAGAGGGG--C----GGG----ATGCGCA
* * * * * *
17613324 AGCCGGGGATCGATCGGGTCCCCTTCTGTGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCGG
144 AGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCTG
* *
17613389 TCCGATCTTAGACTGAGAATGAACTCCGTATCCCTAAGCCAACCGACGAAACGAG-CGGACGGG-
209 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCGG-CGGGC
* ** * *
17613452 TG--GGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGC-CGTCGATCGATAGGATGGTA
273 GGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCGCAT-GATCGATAGGGTGGTA
* *
17613514 GGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATACCATTTTTATGGCTTGTAAATTCAT
337 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
** * **
17613579 ACAATGGTCCCTTAAGCCTTCACGCAAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACA
402 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* ** *
17613644 ATTTTAGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAA
467 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * * * *
17613709 CTTGGTAGATGTGATCCTTGTATTTTTTTTGCCATGCATAAAAAAATTCAGCTAAAATCTCGAAC
532 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
17613774 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGC
597 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
17613839 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGCGTTCTTGAGGTTTGACGAGGGAT
662 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTCAGGTTTGATGAGGGAT
* * * *
17613904 AGGGGGCCAATATAAGGGCCACGTACCAGCACCCAGCGCACATCATGAGCGTACACCCCCC-GGC
727 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGC
** * * * * *
17613968 CTACCGATC-ACCGAAACCCCAATGTCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
792 CCCCCGATCGTCGGAAA-CCCAATGCCGTCGGTCAGG-T-T----C--TGCT-AGACGATGGTGC
* **
17614032 CCCGACGAAGAAAAATGCGACACCAGCACATGCATGAGCCCAGCATG
847 CCCGACGAAGAAAAATACG-CACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
17614079 TGCTGTCGCAACCCTCGGTCTGGTCCGATCATAGACTGAGAATGAACTCCGCATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
17614144 GGATGAACTCCGTTTGCCTAAGTCAACCCACAAAACGAACGTGCGGGCG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
17614193 GGCGGGTTTG
Statistics
Matches: 7128, Mismatches: 812, Indels: 453
0.85 0.10 0.05
Matches are distributed among these distances:
860 58 0.01
861 2 0.00
862 1 0.00
863 1 0.00
864 1 0.00
865 2 0.00
866 1 0.00
867 1 0.00
869 1 0.00
870 2 0.00
871 33 0.00
872 41 0.01
873 163 0.02
874 140 0.02
875 284 0.04
876 14 0.00
877 11 0.00
878 9 0.00
879 214 0.03
880 79 0.01
881 275 0.04
882 21 0.00
883 25 0.00
884 9 0.00
885 324 0.05
886 620 0.09
887 661 0.09
888 195 0.03
889 56 0.01
890 590 0.08
891 10 0.00
892 111 0.02
893 97 0.01
894 190 0.03
895 3 0.00
896 5 0.00
897 23 0.00
898 136 0.02
899 125 0.02
900 50 0.01
901 205 0.03
902 10 0.00
903 155 0.02
904 638 0.09
905 618 0.09
906 125 0.02
907 6 0.00
908 2 0.00
911 1 0.00
912 1 0.00
914 2 0.00
917 2 0.00
918 1 0.00
919 4 0.00
920 1 0.00
921 4 0.00
922 2 0.00
923 2 0.00
926 3 0.00
927 3 0.00
928 1 0.00
930 1 0.00
931 3 0.00
932 5 0.00
934 1 0.00
936 1 0.00
938 35 0.00
939 21 0.00
940 434 0.06
941 3 0.00
942 118 0.02
943 4 0.00
945 2 0.00
947 1 0.00
948 1 0.00
949 7 0.00
950 121 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
ACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGCCGGCGGGCGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCGCATGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTCAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCTGGCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTGCTAGACGATGGTG
CCCCGACGAAGAAAAATACGCACCAGCACATGCCCGAGCCCAGCATG
Found at i:17613196 original size:26 final size:26
Alignment explanation
Indices: 17613158--17613262 Score: 176
Period size: 26 Copynumber: 4.0 Consensus size: 26
17613148 CCGGTCTGAT
17613158 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
17613184 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17613210 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
17613236 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17613262 C
1 C
17613263 CTAACTCAAC
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
25 2 0.03
26 71 0.96
27 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17614593 original size:404 final size:405
Alignment explanation
Indices: 17613794--17614594 Score: 1171
Period size: 404 Copynumber: 2.0 Consensus size: 405
17613784 TTTGTGACCA
*
17613794 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCA
1 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTAA
* *
17613859 AATGCTCTTTAAGGGGGTGTGCGTTCTTGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCC
66 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCC
* * *
17613924 ACGTACCAGCACCCAGCGCACATCATGAGCGTACACCCCCCGGCCTACCGATCACCGAAACCCCA
131 AAGTACCAGCACCCAGCGCACATCATGAGCGCACACCCCCCCGCCTACCGATCACCGAAACCCCA
** * * *
17613989 ATGTCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACA
196 ATGTCACCGATCAGGTTCCCCGACGATGCTACGACGATGGTGCCCCGACGAAGAAAAATGCGACA
* *
17614054 CCAGCACATGCATGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCATAGACTGAG
261 CCAGCACATGCACGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCATAGACTGAG
* *
17614119 AATGAACTCCGCATGCTTAGACTGGGGATGAACTCCGTTTGCCTAAGTCAACCCACAAAACGAAC
326 AATGAACTCCGCATGCTTAGACTAGGAATGAACTCCGTTTGCCTAAGTCAACCCACAAAACGAAC
17614184 GTGCGGGCGGGCGGG
391 GTGCGGGCGGGCGGG
* * * *
17614199 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTATTGGCAGTAAACCTGTAAAATCTAA
1 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTAA
* *
17614264 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCC
66 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCC
* * * ** *
17614329 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCC-CCCTGATCGTCG-AACCCG
131 AAGTACCAGCACCCAGCGCACATCATGAGCGCACACCCCCCCGCCTACC-GATCACCGAAACCCC
* * * * *
17614392 AAT-TCCACCGGTCAGGTTCCCCGACGATGCTACGGCGATGGTGCCCCGACGATGAAATATGCGG
195 AATGT-CACCGATCAGGTTCCCCGACGATGCTACGACGATGGTGCCCCGACGAAGAAAAATGCGA
* * * *
17614456 CACCAGTACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGGTCCGGTCCGATCTTAGACTG
259 CACCAGCACATGCACGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCATAGACTG
* * *
17614521 GGAATGAACTCCGTATGCTTAGACTAGGAATGAACT-CTTTATGCCTAAGTCAACCCACGAAAA-
324 AGAATGAACTCCGCATGCTTAGACTAGGAATGAACTCCGTT-TGCCTAAGTCAACCCAC-AAAAC
*
17614584 GAGCGTGCGGG
387 GAACGTGCGGG
17614595 TGCTTAGCCG
Statistics
Matches: 352, Mismatches: 40, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
403 4 0.01
404 177 0.50
405 171 0.49
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (405 bp):
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTAA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCAGCGCACATCATGAGCGCACACCCCCCCGCCTACCGATCACCGAAACCCCA
ATGTCACCGATCAGGTTCCCCGACGATGCTACGACGATGGTGCCCCGACGAAGAAAAATGCGACA
CCAGCACATGCACGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCATAGACTGAG
AATGAACTCCGCATGCTTAGACTAGGAATGAACTCCGTTTGCCTAAGTCAACCCACAAAACGAAC
GTGCGGGCGGGCGGG
Found at i:17615448 original size:26 final size:26
Alignment explanation
Indices: 17615410--17615462 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17615400 CTGGTTTGAT
17615410 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
*
17615436 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17615462 C
1 C
17615463 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:17616370 original size:26 final size:26
Alignment explanation
Indices: 17616313--17616370 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
17616303 CCGGTCTGAT
*
17616313 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
17616339 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
17616365 CTTAGG
1 CTTAGG
17616371 TCAACCCACG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACTCCGTATG
Found at i:17616613 original size:903 final size:902
Alignment explanation
Indices: 17614199--17617600 Score: 4703
Period size: 903 Copynumber: 3.8 Consensus size: 902
17614189 GGCGGGCGGG
* * * *
17614199 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTATTGGCAGTAAACCTGTAAAATCTAA
1 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
17614264 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCC
66 AATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
17614329 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-C-CCGCCCCCTGATCGTCG-AACCC
131 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGCC-CCCCC-GATCATCGAAACCC
* * * * * * * * * *
17614391 GAATTCCACCGGTCAGGTTCCCCGACGATGCTACGGCGATGGTGCCCCGACGATGAAATATGCGG
194 CAATGCCGCCAGTCAGGTTCTCCTACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAG
* *
17614456 CACCAGTACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGGTCCGGTCCGATCTTAGACTG
259 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* **
17614521 GGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTTTATGCCTAAGTCAACCCACGAAA-AG
324 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA-
* * * * *
17614585 AGCGTGCGGGTGCTTAGCCGGTCAGAGGGGCAGGATGC-CTAAGTTGGGGATCGGTCGGGTCCCC
388 AGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGC-AAGTCGGGGATCGGTCGGGTCCCC
* * * * * *
17614649 CTTTACATGCTGCTAATCCTACTGTCGCAACCCTC-AGTCCGGT-TCAATCTTAGACTGGGGATG
452 CTCTGCGTGCTGCTGATCCTACTGTCGCAACCCTCGA-TCCGGTCT-GATCTTAGACTGGGAATG
* * * * *
17614712 AACTCCGTATGCCTAAGCCAACTGACGAAATGAGTGGGTGGGCAGGCGGGCGGGCAGGTACTACG
515 AACTCCGTATGCCTAAGCCAACCGACGAAA-CA---AGCGGGCAGGCGGGCGGGCAGGCACTACG
*
17614777 CCGGCCAGAGAGACGGGATGCTTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
576 CCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* ** *
17614842 GTCATATTTCTGCACGCCAATGCCATTTTTATGGCTTGTCAATTCATACAATGGTCCCTTAAGCC
641 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
17614907 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTTAGGATTTTCAAAACTTTTTA
706 TTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA-TTTTTCACGATTTTCAAAACTTTTTA
* * * * * *
17614972 CGATTC-AGGATTTTTTAAAATTTTTTTGGAAAGTGTTTTGGCCCCAAACTTGGTAGACGTGATC
770 CGGTGCGA-GATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
17615036 CTTGTATTTTTGTTGGCATG-AAAAAACAAATTCACCTAAAAACTCGAAGTGTACAAGATTTTGT
834 CTTGTATTTTTGTTGGCATGCACAAAAC-AATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGT
17615100 GACCA
898 GACCA
* * * * *
17615105 TTTGAAAAAAATGTCCCTATTTCAGACACTTTAATGGGTACTGGTAGCAAACTTGTAAAATCTCA
1 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
17615170 AATGCTCTTT-AAGGGGTTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGC
66 AATGCTCTTTAAAGGGG-TGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
17615234 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTGCCGGCCCCCCGATCGTCGAAACC
130 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCT--CGCCCCCCCGATCATCGAAACC
* * *
17615299 CCAATGCCGTCGGTCAGGTTCT-C--CG--G-T-----GATGGTGCCCCGGCGAAGAAAAATGCA
193 CCAATGCCGCCAGTCAGGTTCTCCTACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCA
* ** * * * **
17615353 GCACCAGTACATGCCCGAGCCCAGCATGTGCTACCACAACCGTCGGTCTGGTTTGATCTTAGACT
258 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * * * *
17615418 AGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACG
323 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
* * * * * * *
17615483 AGCGTGC-GAGCGCTCAGCCGACCAGAGGGCCGGGATGCGCAAGACAGGGATCGGTCGAGTCCCT
388 AGCGTGCAG-GCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCC
* * * * * * * *
17615547 CTCTGTGTGCTGCCGATCCTGCTGGCGCATCCCTCGGT-CGAATTTGATCTTAGACTGGGAATGA
452 CTCTGCGTGCTGCTGATCCTACTGTCGCAACCCTCGATCCG-GTCTGATCTTAGACTGGGAATGA
* * * * * *
17615611 ACTCCGCATGCCTAAGGCAACCGATGAAACGAA-AGGG-TGGACGGGCGGGCGGGCACTACGCCG
516 ACTCCGTATGCCTAAGCCAACCGACGAAAC-AAGCGGGCAGG-CGGGCGGGCAGGCACTACGCCG
*
17615674 GCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTC
579 GCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
17615739 ATATTTTTGTGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTC
644 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
17615804 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGT
709 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
*
17615869 GCGAGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATTCTTGT
774 GCGAGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
17615934 ATTTTTGTTGCCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTCTGACCA
839 ATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCA
*
17615998 TTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
1 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
17616063 AATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
66 AATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
17616128 AAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCTCGACCCCCCCGATCATCGAAACCCC
131 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCG-CCCCCCCGATCATCGAAACCCC
* * * *
17616193 AATGCCGCCAGTCAGGTTCTCTTACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGC
195 AATGCCGCCAGTCAGGTTCTCCTACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGC
* *
17616258 ACCAGCACATGCCCGAGCCCAACATGTGCTG-CGACAACCCTCGGTCCGGTCTGATCTTAGACTG
260 ACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG-CAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
17616322 GGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTATGCTTAGGTCAACCCACGAAACAA
324 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAA
** * * *
17616387 GCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCATAAGCCGGGGATCGATCGGGTCCCTCT
389 GCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCT
* * * *
17616452 TTGCGTGCTGCTGATCCTGCTGTCGCAACCCTTGATCCGGTCTGATCTTAGGCTGGGAATGAACT
454 CTGCGTGCTGCTGATCCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACT
* * *
17616517 CCGTATGCCTAAGCCAACTGACGAAACAAGCGGGCAGGCGAGCGGGCAGGCACTACGTCGGCCAG
519 CCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCGGGCGGGCAGGCACTACGCCGGCCAG
17616582 AGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
584 AGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
17616647 TTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
649 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
17616712 AAGTTTCATGACAAGATGGCTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTGCG-G
714 AAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTGCGAG
17616776 AATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
779 -ATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
17616841 TTGTTGGCTTGCACAAGACAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCA
843 TTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCA
*
17616901 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA-CTGTAAAATCTCA
1 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
17616965 AATGCTCTTTAAGGGGGTGCGTGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCC
66 AATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
17617030 AAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCTGATCATCGAAACCC
131 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCTC-GCCCCCCCGATCATCGAAACCC
*
17617095 CAATGCCGCCAGTCAGGTTCTCCTACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCAG
194 CAATGCCGCCAGTCAGGTTCTCCTACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAG
*
17617160 CACCA-CACATGCCCAAGCCCAGCATGTGCTGTCGCAA-CCTCGGTCCGGTCCGATCTTAGACT-
259 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * **
17617222 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAATGA
324 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAA
* * * *
17617287 GCGTGCAGGTGCTCAGCCGCCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCT
389 GCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCT
* ** * * * *
17617352 CT--GTGCTGTTGATCCTACTACCACAACCCTCG-GCCTGGTCCGGTCTTAGACTGGGAATGAAC
454 CTGCGTGCTGCTGATCCTACTGTCGCAACCCTCGATCC-GGTCTGATCTTAGACTGGGAATGAAC
* * * * * * ** *
17617414 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGACGGGCGGGCGCTATTCCGGTCA
518 TCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCGGGCGGGCAGGCACTACGCCGGCCA
* * * * * *
17617479 AAGAGACGGGATGGGCAAGCCGTGGATAGATAGGGTGGTTGGTGGGTTTAGGCACATTTTCATAT
583 GAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
17617544 TTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
648 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
17617601 TTATTTTTTC
Statistics
Matches: 2230, Mismatches: 227, Indels: 86
0.88 0.09 0.03
Matches are distributed among these distances:
891 2 0.00
892 38 0.02
893 293 0.13
894 190 0.09
895 2 0.00
897 6 0.00
898 473 0.21
899 2 0.00
900 117 0.05
901 24 0.01
902 141 0.06
903 739 0.33
904 7 0.00
905 5 0.00
906 154 0.07
908 9 0.00
909 27 0.01
910 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (902 bp):
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGCCCCCCCGATCATCGAAACCCCA
ATGCCGCCAGTCAGGTTCTCCTACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGC
GTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCT
GCGTGCTGCTGATCCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCGGGCGGGCAGGCACTACGCCGGCCAGAG
AGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTGCGAGAT
TTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
TTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCA
Found at i:17617248 original size:25 final size:26
Alignment explanation
Indices: 17617214--17617268 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17617204 CCGGTCCGAT
*
17617214 CTTAGACT-GGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17617239 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17617265 CTTA
1 CTTA
17617269 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 8 0.29
26 20 0.71
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17618084 original size:7 final size:7
Alignment explanation
Indices: 17618074--17618187 Score: 61
Period size: 7 Copynumber: 15.7 Consensus size: 7
17618064 ATTTTTGTCT
17618074 TTTTTTA
1 TTTTTTA
17618081 TTTTTTA
1 TTTTTTA
*
17618088 TTTTTGA
1 TTTTTTA
**
17618095 TTCATTA
1 TTTTTTA
17618102 TTTTTT-
1 TTTTTTA
17618108 TTTTCTTA
1 TTTT-TTA
17618116 CTTTTTATA
1 -TTTTT-TA
*
17618125 TTTTATA
1 TTTTTTA
17618132 TTTTTT-
1 TTTTTTA
* **
17618138 GTTTTGC
1 TTTTTTA
**
17618145 TTTAATA
1 TTTTTTA
*
17618152 TTTTTTT
1 TTTTTTA
17618159 TTTTTTA
1 TTTTTTA
*
17618166 TTTCTTTT
1 TTT-TTTA
17618174 TTTATTTA
1 TTT-TTTA
17618182 TATTTT
1 T-TTTT
17618188 CATAAATTTT
Statistics
Matches: 78, Mismatches: 22, Indels: 13
0.69 0.19 0.12
Matches are distributed among these distances:
6 8 0.10
7 45 0.58
8 17 0.22
9 8 0.10
ACGTcount: A:0.15, C:0.04, G:0.03, T:0.78
Consensus pattern (7 bp):
TTTTTTA
Found at i:17618167 original size:14 final size:14
Alignment explanation
Indices: 17618073--17618187 Score: 59
Period size: 16 Copynumber: 7.4 Consensus size: 14
17618063 CATTTTTGTC
17618073 TTTTTTTATTTTTTA
1 TTTTTTT-TTTTTTA
** **
17618088 TTTTTGATTCATTA
1 TTTTTTTTTTTTTA
*
17618102 TTTTTTTTTTCTTA
1 TTTTTTTTTTTTTA
* *
17618116 CTTTTTATATTTTATA
1 -TTTTT-TTTTTTTTA
17618132 TTTTTTGTTTTGCTTTAATA
1 -TTTTT-TTTT--TTT--TA
17618152 TTTTTTTTTTTTTA
1 TTTTTTTTTTTTTA
17618166 TTTCTTTTTTTATTTA
1 TTT-TTTTTTT-TTTA
17618182 TATTTT
1 T-TTTT
17618188 CATAAATTTT
Statistics
Matches: 76, Mismatches: 15, Indels: 17
0.70 0.14 0.16
Matches are distributed among these distances:
14 20 0.26
15 17 0.22
16 24 0.32
17 2 0.03
18 6 0.08
19 5 0.07
20 2 0.03
ACGTcount: A:0.15, C:0.04, G:0.03, T:0.78
Consensus pattern (14 bp):
TTTTTTTTTTTTTA
Found at i:17618173 original size:18 final size:18
Alignment explanation
Indices: 17618116--17618186 Score: 53
Period size: 18 Copynumber: 4.0 Consensus size: 18
17618106 TTTTTTCTTA
*
17618116 CTTTTTATATTTTATATTT
1 CTTTTTTTA-TTTATATTT
*
17618135 -TTTGTTTTGCTTTA-ATATT
1 CTTT-TTTT-ATTTATAT-TT
17618154 -TTTTTTT-TTT-TATTT
1 CTTTTTTTATTTATATTT
17618169 CTTTTTTTATTTATATTT
1 CTTTTTTTATTTATATTT
17618187 TCATAAATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
15 2 0.05
16 12 0.28
17 3 0.07
18 14 0.33
19 12 0.28
ACGTcount: A:0.15, C:0.04, G:0.03, T:0.77
Consensus pattern (18 bp):
CTTTTTTTATTTATATTT
Found at i:17618810 original size:7 final size:7
Alignment explanation
Indices: 17618800--17618922 Score: 63
Period size: 7 Copynumber: 16.7 Consensus size: 7
17618790 ATTTTTGTCT
17618800 TTTTTTA
1 TTTTTTA
17618807 TTTTTTA
1 TTTTTTA
*
17618814 -TTTTGA
1 TTTTTTA
**
17618820 TTCATTA
1 TTTTTTA
17618827 TTTTTTA
1 TTTTTTA
17618834 TTTTCTTA
1 TTTT-TTA
17618842 CTTTTTATA
1 -TTTTT-TA
*
17618851 TTTTATA
1 TTTTTTA
*
17618858 TTTTTTGT
1 TTTTTT-A
17618866 TTTGCTTTA
1 TTT--TTTA
* *
17618875 ATATTT-
1 TTTTTTA
*
17618881 TTTTCT-
1 TTTTTTA
17618887 TTTTTTA
1 TTTTTTA
17618894 TTTTTTA
1 TTTTTTA
*
17618901 TTTCTTTC
1 TTT-TTTA
17618909 TTTATTTA
1 TTT-TTTA
17618917 TATTTT
1 T-TTTT
17618923 CATAAATTTT
Statistics
Matches: 87, Mismatches: 19, Indels: 19
0.70 0.15 0.15
Matches are distributed among these distances:
6 13 0.15
7 39 0.45
8 23 0.26
9 9 0.10
10 3 0.03
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:17618869 original size:51 final size:52
Alignment explanation
Indices: 17618800--17618901 Score: 125
Period size: 51 Copynumber: 2.0 Consensus size: 52
17618790 ATTTTTGTCT
* *
17618800 TTTTTTATTTTTTATTTTGATTCATTA-TTTTTTATTTTCTTACTTTTTATA
1 TTTTATATTTTTTATTTTGATTCAATATTTTTTTATTTTCTTACTTTTTATA
* * * * * *
17618851 TTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTTATTTTTTAT
1 TTTTATATTTTTTATTTTGATTCAATATTTTTTTATTTTCTTACTTTTTAT
17618902 TTCTTTCTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
51 22 0.52
52 20 0.48
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (52 bp):
TTTTATATTTTTTATTTTGATTCAATATTTTTTTATTTTCTTACTTTTTATA
Found at i:17618893 original size:19 final size:20
Alignment explanation
Indices: 17618870--17618912 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
17618860 TTTTGTTTTG
17618870 CTTTAATATTTT-TTTCTTT
1 CTTTAATATTTTATTTCTTT
* *
17618889 -TTTTATTTTTTATTTCTTT
1 CTTTAATATTTTATTTCTTT
17618908 CTTTA
1 CTTTA
17618913 TTTATATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
18 9 0.47
19 7 0.37
20 3 0.16
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (20 bp):
CTTTAATATTTTATTTCTTT
Found at i:17618902 original size:23 final size:23
Alignment explanation
Indices: 17618824--17618922 Score: 69
Period size: 23 Copynumber: 4.4 Consensus size: 23
17618814 TTTTGATTCA
*
17618824 TTATTTTTTATTTTCTTAC--TTT
1 TTATTTTTTATTTT-TTTCTTTTT
* * *
17618846 TTATATTTTATATTTTT-TGTTT
1 TTATTTTTTATTTTTTTCTTTTT
** **
17618868 TGCTTTAATATTTTTTTCTTTTT
1 TTATTTTTTATTTTTTTCTTTTT
* *
17618891 TTATTTTTTATTTCTTTCTTTAT
1 TTATTTTTTATTTTTTTCTTTTT
*
17618914 TTATATTTT
1 TTATTTTTT
17618923 CATAAATTTT
Statistics
Matches: 57, Mismatches: 17, Indels: 5
0.72 0.22 0.06
Matches are distributed among these distances:
21 2 0.04
22 26 0.46
23 29 0.51
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (23 bp):
TTATTTTTTATTTTTTTCTTTTT
Found at i:17618913 original size:19 final size:18
Alignment explanation
Indices: 17618856--17618915 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
17618846 TTATATTTTA
* *
17618856 TATTTTTTGTT-TTGCTT
1 TATTTTTTTTTCTTTCTT
* *
17618873 TAATATTTTTTTCTTTTTT
1 T-ATTTTTTTTTCTTTCTT
17618892 TATTTTTTATTTCTTTCTT
1 TATTTTTT-TTTCTTTCTT
17618911 TATTT
1 TATTT
17618916 ATATTTTCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 1 0.03
18 14 0.41
19 19 0.56
ACGTcount: A:0.12, C:0.07, G:0.03, T:0.78
Consensus pattern (18 bp):
TATTTTTTTTTCTTTCTT
Found at i:17618923 original size:19 final size:18
Alignment explanation
Indices: 17618881--17618923 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
17618871 TTTAATATTT
* *
17618881 TTTTCTTTTTTTATTTTT
1 TTTTCTTTCTTTATTTTA
17618899 TATTTCTTTCTTTATTTATA
1 T-TTTCTTTCTTTATTT-TA
17618919 TTTTC
1 TTTTC
17618924 ATAAATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 18 0.86
20 2 0.10
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTCTTTCTTTATTTTA
Found at i:17619554 original size:15 final size:15
Alignment explanation
Indices: 17619536--17619631 Score: 57
Period size: 16 Copynumber: 5.9 Consensus size: 15
17619526 CATTTTTGTC
17619536 TTTTTTTATTTTTTA
1 TTTTTTTATTTTTTA
* *
17619551 TTTTTTTACTTTATA
1 TTTTTTTATTTTTTA
* * *
17619566 TAGTTTATATTTTTTG
1 T-TTTTTTATTTTTTA
*
17619582 TTTTGCTTTAATATTTTTT
1 TTTT--TTT-AT-TTTTTA
*
17619601 TCTTTTTTATTTCTTTC
1 T-TTTTTTATTT-TTTA
*
17619618 TTTATTTATTTTTT
1 TTTTTTTATTTTTT
17619632 CATAAATTTT
Statistics
Matches: 62, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
15 19 0.31
16 21 0.34
17 8 0.13
18 5 0.08
19 6 0.10
20 3 0.05
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (15 bp):
TTTTTTTATTTTTTA
Found at i:17619632 original size:15 final size:14
Alignment explanation
Indices: 17619596--17619632 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
17619586 GCTTTAATAT
17619596 TTTTTTCTTTTTTA
1 TTTTTTCTTTTTTA
17619610 TTTCTTTCTTTATTTA
1 TTT-TTTCTTT-TTTA
17619626 TTTTTTC
1 TTTTTTC
17619633 ATAAATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.14
15 11 0.52
16 7 0.33
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTTTCTTTTTTA
Found at i:17619973 original size:697 final size:704
Alignment explanation
Indices: 17617600--17625474 Score: 11872
Period size: 698 Copynumber: 11.1 Consensus size: 704
17617590 GTCCCTTAAG
17617600 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
* *
17617665 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTT-TTTCTT-GT
*
17617730 TTTTTTAATTTTTTT-GCAAAATTCTTTTTATTTCTTC-TTCCATTTTTTTTCACACTTCCTT-G
129 TTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCATTTTTTTTCACACTTCCTTGG
17617792 ATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTT-ACAAAT
194 ATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAAT
*
17617856 TTCTTTTTATTTTTTATTTCCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTC
259 TTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTC
17617921 GTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTG-CCTTGAATTTTTATATT
324 GTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTATATT
17617985 GTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTT
389 GTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTT
17618050 TCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTTTTTTTCTT
454 TCTCGTTTCATTTCATTTTTGTC-----TTATTTTTTATTTTT-ATT-ATTA------TTTTCTT
*
17618115 ACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTT-TTTTTTATTTCTTTTTTTAT
506 ACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTCTTTCTTTAT
*
17618179 TTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTTTTTTTTTTTATTTATCGT
571 TTATATTTTCATAAATTTTTATAATGTTTTGGA--TTTTT-TTTTTCTTTTTTTTTATTTATCGT
17618244 TGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACT-CTTTTCCTTTTAAATTTTTCT
633 TGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTTTC-
17618308 TTTTTTTTTTA
697 ---TTTTTTTA
* * *
17618319 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACGTGTTTTTTTTTTGTTTTAAAATT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCAC-T-TTTTTTCTTCGTTTTAAAAAT
*
17618384 TTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTTTCCTGT
64 TTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTTTCTTGT
*
17618449 TTTTCTAATTTTTTTCGCAAAATTTTTTTTATTTCTTCTTTCCATTTTTTTTTCACACTTCCTTG
129 TTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCA-TTTTTTTTCACACTTCCTTG
17618514 GATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAA
193 GATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAA
17618579 TTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTT
258 TTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTT
17618644 CGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTATAT
323 CGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTATAT
17618709 TGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTTCTAT
388 TGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTTCTAT
17618774 TTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTGATTCATTATTTTTTATTTTC
452 TTTCTCGTTTCATTTCATTTTTGTC-----TTATTTTTTA-TTT--TT-ATTA----TTATTTTC
17618839 TTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTTATTTTTTATTT
504 TTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTC--------TTTTTTATTT
17618904 CTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTATTTTTCTCTTCTTTT
561 CTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGA-TTTTT-TTTTTCT-TT-TTTT
* *
17618969 CTTATTTGTCGTTGTTTCTTATTTTCTATTATATTTTTATAATTTTTCATTAACTCCTTTTCCTT
622 -TTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTT
17619034 TTAAATTTTTCTTTTTTTTTTTTTA
686 TTAAATTTTTC------TTTTTTTA
* *
17619059 CTTATTTTATCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCATTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
*
17619124 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTCGCCTCTTCA-TTTTTTTTCTTGTTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTTTCTTGTTT
*
17619188 TTCCAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCATTTTTTTTTTCACACTTCCTTGG
131 TTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCA--TTTTTTTTCACACTTCCTTGG
*
17619253 ATTTTTTATTTTTCCTAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAAT
194 ATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAAT
17619318 TTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTC
259 TTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTC
*
17619383 GTTTTCATTTTTATTTTGCATTAACTTTTCTCATTTTTAATTTTTTGCCCTTGAATTTTTATATT
324 GTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTATATT
17619448 GTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTT
389 GTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTT
* *
17619513 TCTCGTTTCATTTCATTTTTGTC-T-TTTTTTA-TTTT-TTA-T-TTTT-TTACTTTATATAGTT
454 TCTCGTTTCATTTCATTTTTGTCTTATTTTTTATTTTTATTATTATTTTCTTACTTTTTATATTT
*
17619571 TATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTCTTTCTTTATTTATTTTTTCATA
519 TATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTCTTTCTTTATTTATATTTTCATA
*
17619636 AATTTTTATAATGTTTTAGA-TTTTTTTTTCTTTTTTTTTATTTATCGTTGTTTCTTATTTTCTA
584 AATTTTTATAATGTTTTGGATTTTTTTTTTCTTTTTTTTTATTTATCGTTGTTTCTTATTTTCTA
*
17619700 TTGTATTATTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTTTC-TTTTTTA
649 TTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTTTCTTTTTTTA
* *
17619755 CTTATTTTATCATGTGCTTTCATATTTTCTTTTCTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
* *
17619820 CTACAAAACATTTTTCCTTTTTATTTTATTTCATATTTTTGCCTCTTTATTTTTTTTTCTTGTTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTTTCTTGTTT
*
17619885 TTCCAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCATTTTTTTTTTCACACTTCCTTGG
131 TTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCA--TTTTTTTTCACACTTCCTTGG
* * *
17619950 ATTTTTTATTTTTCAAAAATCTTTTGTCTTTCCATTTTTATTCATTTCTTAATTTTTTCACAAAT
194 ATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAAT
17620015 TTCTTTTTATTTTTTATTTTCA--TTTAAATTCTTATAG--TTTTTTGTTGCATTTTC-TTTTTC
259 TTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTC
17620075 G-TTTCATTTTTA-TTTGCATTAACTTTTCTCTTTTTTAA-TTTTTGCCCTTGAATTTTTATATT
324 GTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTATATT
17620137 GTTTTCTTATTATATCTTATATGTTTTTCAA-TTTTTGTA-TTTTTCAAATATTTTTTTTCTATT
389 GTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTTCTATT
17620200 TTCTCGTTTCATTTCATTTTTGTCTT-TTTTTTA---TT-TT-TTATTTTCTTAC-TTTTATATT
453 TTCTCGTTTCATTTCATTTTTGTCTTATTTTTTATTTTTATTATTATTTTCTTACTTTTTATATT
*
17620258 TTATATTTTTTG-TTTGCTTTAATATTTTTCCTTTTTTCCTTTTTATTTCTTTC-TTATTTATAT
518 TTATATTTTTTGTTTTGCTTTAATA----T--TTTTTTCTTTTTTATTTCTTTCTTTATTTATAT
*
17620321 TTTCATAAATTTTTATAATG-TTTGCA--TTTTTTTTC---TTTTTTA-TTATCGTTGTTTCTTA
577 TTTCATAAATTTTTATAATGTTTTGGATTTTTTTTTTCTTTTTTTTTATTTATCGTTGTTTCTTA
17620379 TTTTCTATTGTATTTTTATAA-TTTTCATTAACTCCTTTTCCTTTTAAA-TTTTCTTTTTTTA
642 TTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTTTCTTTTTTTA
* * **
17620440 ATTA-TTTTTCATGCGCCGTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
*
17620504 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTTA-TTTTTTTTCTTG-TT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTTTCTTGTTT
*
17620567 TTCTAATTTTTTTCGCAAAATTCTTTCTATTTCTTCTTTCCA-TTTTTTTCACACTTCCTTGGA-
131 TTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCATTTTTTTTCACACTTCCTTGGAT
* *
17620630 TTTTTA-TTTTCATAAATCTCTTGTCTTTTTA-TTTTATTC-TTTCTTAA--TTTTCACAAATTT
196 TTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTT
17620690 CTTTTTA-TTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGT
261 CTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGT
17620754 TTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTATATTGT
326 TTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTATATTGT
17620819 TTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTTCTATTTT
391 TTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTTCTATTTT
* *
17620884 CTCGTTTCATTTCATTTTTGTCTTTTTTATTTTTATTTTGATTCATTATTTTTATTTCTTACTTT
455 CTCGTTTCATTTCATTTTTGTC--TTAT-TTTTTA-TTT--TT-ATTA-TTAT-TTTCTTACTTT
*
17620949 TTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTCCTTTTTTATTTTTATTTCTTTCTTTA
511 TTATATTTTATATTTTTTGTTTTGCTTTAATA---TTT--TTTTCT-TTTTTATTTCTTTCTTTA
*
17621014 TTTATATTTTCATAAATTTTTATAATGTTTTGCA-TTTTTTTTTCTTTTTTTTTTATTTATCGTT
570 TTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTTTTC-TTTTTTTTTATTTATCGTT
17621078 GTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTTTCTT
634 GTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTTTC--
17621143 TTTTTTTTA
697 -TTTTTTTA
* **
17621152 CTTA-TTTTTCATGCGCCGTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
17621216 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTTTCTTGTTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTTTCTTGTTT
*
17621281 TTCTAATTTTTTTCGCAAAATTCTTTCTATTTCTTCTTTCCATTTTTTTTCACACTTCCTTGGAT
131 TTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCATTTTTTTTCACACTTCCTTGGAT
*
17621346 TTTTTATTTTTCATAAATCTCTTGTCTTTTCATTTTTATTCTTTTCTTAA-TTTTTCACAAATTT
196 TTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTT
17621410 CTTTTTATTTTTTATTTTCA-TTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGT
261 CTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGT
*
17621474 TTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTCAATTTTTATATTGT
326 TTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTATATTGT
17621539 TTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTC
391 TTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTC
17621604 TCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTT-TTATTTTCTT
456 TCGTTTCATTTCATTTTTGTC-----TTATTTTTTATTTTT-ATT-ATTATTTTCTTA----C-T
*
17621668 ACTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTCTTTTTTTTTTATTTCTTTCTTT
509 --TTTTATATTTTATATTTTTTGTTTTGCTTTAATA--TTTT-TTTCTTTTTTATTTCTTTCTTT
17621733 ATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTCTTTTTTATTTAT
569 ATTTATATTTTCATAAATTTTTATAATGTTTTGGA--TTTTT-TTTTTCTTT-TTTTTTATTTAT
17621798 CGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTT
630 CGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTT
17621863 TCTTTTTTTTTTA
695 TC---TTTTTTTA
17621876 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
17621941 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA-TTTTTTTTCTT-TTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTTTCTTGTTT
*
17622004 TTCCAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCATTTTTTTTCACACTTCCTTGGAT
131 TTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCATTTTTTTTCACACTTCCTTGGAT
*
17622069 TTTTTAATTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTT
196 TTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTT
17622134 CTTTTTATTTTTTATTTTCATTTTTAAATTCTTATA---------G-T---TTTTC-----T--T
261 CTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGT
*
17622179 TTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAACTTTTATATTGT
326 TTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTATATTGT
17622244 TTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTTCTATTTT
391 TTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTTCTATTTT
17622309 CTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTTATTTTCTTA
455 CTCGTTTCATTTCATTTTTGTC-----TTATTTTTTA--TTT--TT-ATTA---TTATTTTCTTA
*
17622374 CTTTTTATATTTTATA-TTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTTTATTTCTCTC
507 CTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTC-----T-TTTTTATTTCTTTC
* *
17622438 TTTAATTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTTTCTTTTCTTTTTTTATTTA
566 TTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTTT-TCTT-TTTTTTTATTTA
17622503 TCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTT
629 TCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTT
17622568 TTCTTTTTTTTTTTA
694 TTC----TTTTTTTA
17622583 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCAC-TTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
17622647 CTACAAAACATTTTTTCTTTTTATTTT-TTTCATATTTTTGCCTCTTCATTTTTTTTTCTTGTTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTTTCTTGTTT
*
17622711 TTC-AA-TTTTTTCGCAAAATT-TTTTTATTTCTTCTTTCCATTTTTTTTCACACTTCCTTCGAT
131 TTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCATTTTTTTTCACACTTCCTTGGAT
*
17622773 TTTTTATTTTTCATAAATC-TCTGTCTTTTCATTTTTATTCTTTTCTTAA-TTTTTCACAAATTT
196 TTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTT
*
17622836 CTTTTTATTTTTTATTTTCATTTGTAAATTC-TATAGTTTTTTTTGTTGCA-TTTCTTTTTTCGT
261 CTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGT
* * *
17622899 TTTCATTTTTATTTTGCATTAACATTTCTCTTTTTTTATTTTTTGCCTTTGAATTTTTATATTG-
326 TTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTATATTGT
*
17622963 TTTCTTATTATATCCTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTC
391 TTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTC
* * *
17623028 TCGTTTCGTTTCATTTTTGACTTTTTTATTTTTATTTTTGATTCATCATTTTTTATTTTCTTACT
456 TCGTTTCATTTCATTTTTG--TCTTAT-TTTTTATTTTT-A-T--T-A----TTATTTTCTTACT
* *
17623093 TTTTATATTTTATATTTTTTGTTTTGCTTTAAT-TTTTTTTATTTTTTATTTCTTTCTTTATGTA
509 TTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTCTTTCTTTATTTA
*
17623157 TATTTTCATAAATTTTGATAATGTTTTGG---TTTTTTTTC--TTTTTTTATTTATCGTTGTTTC
574 TATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTTTTCTTTTTTTTTATTTATCGTTGTTTC
17623217 TTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAA-TTTT-TTTTTTT
639 TTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTTTCTTTTTTT
17623280 A
704 A
17623281 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
* *
17623346 CTACAAAACATTTTTTCTTTTTATTTTATTTCATTTTTTTGCCCCTTCATTTTTTATTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA---TTT-TTTTTTCTT
* * *
17623411 GTTTTTCTATTTTTTTTCGCAAAATTCTTTTTA-TTCTTGTTTGCATTTTTTTTCACACTTCCTT
127 GTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCATTTTTTTTCACACTTCCTT
17623475 GGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAA
192 GGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAA
17623540 ATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGATTTTTTTTGTTGCATTTTCTTTT
257 ATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAG-TTTTTTTTGTTGCATTTTCTTTT
* * *
17623605 TTCGTTTTCATTTTTATTTTGCTTTAACTTTTCTCTTTTTTAATTTTTTGTCTTTGAATTTTTAT
321 TTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTAT
17623670 ATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTA-TTTTTCGAAATA-TTTTTTCT
386 ATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTC-AAATATTTTTTTCT
17623733 ATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTTTATT
450 ATTTTCTCGTTTCATTTCATTTTTGTC-----TTATTTTTTA--TTT--TT-ATTA----TTATT
*
17623798 TTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTT-A-ATTATTTTCTTTTTTATTTCTTTC
501 TTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTCTTTC
*
17623861 CTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTTCTTTTCTTTTTTTA
566 TTTATTTATATTTTCATAAATTTTTATAATGTTTTGGA--TTTTT-TTTTTC--TT-TTTTTTTA
17623926 TTTATCGTTGTTTCTTATTTTCTATTG--------T-ATTTTTC--TAA-T--TTTT-C------
625 TTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAA
17623970 -----T-TTTTTTTA
690 ATTTTTCTTTTTTTA
17623979 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
17624044 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTT
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA---TTT-TTTTTTCTT
*
17624109 -TTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCT
127 GTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCA-TTTTTTTTCACACTTCCT
17624173 TGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACA
191 TGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACA
17624238 AATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTT
256 AATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTT
*
17624303 TTCGTTTTCATTTTTATTTTGCATTAAC-TTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTAT
321 TTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTAT
17624367 ATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTA
386 ATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTA
*
17624432 TTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTTGTTCATTATTTTTTATTC
451 TTTTCTCGTTTCATTTCATTTTTGTC-----TTATTTTTTA---TTT-TT-ATTA----TTATTT
17624497 TCTTACTTTTTATATTTTATA-TTTTTGTTTTGCTTTAATA-TTTTTTCTTTTTTTATTTCTTTC
502 TCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTC-TTTTTTATTTCTTTC
17624560 TTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTATTTTCTTTTCTTTTTTTAT
566 TTTATTTATATTTTCATAAATTTTTATAATGTTTTGGA-TTTTTT-TTTTC--TT-TTTTTTTAT
17624625 TTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAA
626 TTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAA
17624690 TTTTTCTCTTTTTTTTA
691 -TTTT-TC-TTTTTTTA
17624707 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTT-AAAATTT
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
17624771 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTCTTG
66 CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA--TTTT-TTTTTCTTG
*
17624836 TTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCTT
128 TTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCA-TTTTTTTTCACACTTCCTT
17624901 GGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAA
192 GGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAA
17624966 ATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTT
257 ATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTT
*
17625031 TCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTTAT
322 TCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAA-TTTTTAT
* *
17625096 ATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTCTTTTTTTTCAAATATTTTTTTTCT
386 ATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTTCT
* *
17625161 ATTTTCTCGTTTAATTTCATTTTTGCCTTTTTTATTTTTTATTTTTATTCATTATTTTTTATTTT
450 ATTTTCTCGTTTCATTTCATTTTTG----TCTTATTTTTTA--TTT-TT-ATTA----TTATTTT
17625226 CTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTTATTTCTTTCT
503 CTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTC-TTTTTTATTTCTTTCT
17625291 TTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTCTTTTTCTTTTCTTTTTTTATT
567 TTATTTATATTTTCATAAATTTTTATAATGTTTTGGA-TTTTT-TTTTTC--TT-TTTTTTTATT
17625356 TATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAAT
627 TATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAAT
17625421 TTTTCTTTTTTTTTA
692 TTTTC--TTTTTTTA
17625436 CTTATTTTTTCATGTGC-TTCATATTTTCTTTTGTTTTCA
1 CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCA
17625475 TATTTTTGCC
Statistics
Matches: 6757, Mismatches: 144, Indels: 501
0.91 0.02 0.07
Matches are distributed among these distances:
672 12 0.00
673 20 0.00
674 15 0.00
675 8 0.00
676 25 0.00
677 28 0.00
678 17 0.00
679 47 0.01
680 55 0.01
681 8 0.00
682 90 0.01
683 12 0.00
684 110 0.02
685 38 0.01
686 42 0.01
687 35 0.01
688 67 0.01
689 67 0.01
690 34 0.01
691 16 0.00
692 38 0.01
693 38 0.01
694 2 0.00
695 15 0.00
696 121 0.02
697 301 0.04
698 427 0.06
699 259 0.04
700 49 0.01
701 10 0.00
702 56 0.01
703 112 0.02
704 153 0.02
705 176 0.03
706 296 0.04
707 145 0.02
708 133 0.02
709 71 0.01
710 21 0.00
711 160 0.02
712 240 0.04
713 75 0.01
714 58 0.01
715 30 0.00
716 18 0.00
717 115 0.02
718 78 0.01
719 151 0.02
720 322 0.05
721 104 0.02
722 29 0.00
723 249 0.04
724 265 0.04
725 191 0.03
726 118 0.02
727 281 0.04
728 163 0.02
729 124 0.02
730 191 0.03
731 2 0.00
732 3 0.00
734 14 0.00
735 54 0.01
736 4 0.00
737 142 0.02
738 354 0.05
739 1 0.00
740 52 0.01
ACGTcount: A:0.17, C:0.12, G:0.04, T:0.67
Consensus pattern (704 bp):
CTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTT
CTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTTTTCTTGTTT
TTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTCTTTCCATTTTTTTTCACACTTCCTTGGAT
TTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTT
CTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGT
TTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTGCCCTTGAATTTTTATATTGT
TTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTC
TCGTTTCATTTCATTTTTGTCTTATTTTTTATTTTTATTATTATTTTCTTACTTTTTATATTTTA
TATTTTTTGTTTTGCTTTAATATTTTTTTCTTTTTTATTTCTTTCTTTATTTATATTTTCATAAA
TTTTTATAATGTTTTGGATTTTTTTTTTCTTTTTTTTTATTTATCGTTGTTTCTTATTTTCTATT
GTATTTTTATAATTTTTCATTAACTCCTTTTCCTTTTAAATTTTTCTTTTTTTA
Found at i:17620918 original size:6 final size:6
Alignment explanation
Indices: 17620907--17620964 Score: 53
Period size: 7 Copynumber: 8.8 Consensus size: 6
17620897 ATTTTTGTCT
* *
17620907 TTTTTA TTTTTA TTTTGA TTCATTA TTTTTA TTTCTTA CTTTTTA TATTTTA
1 TTTTTA TTTTTA TTTTTA TT-TTTA TTTTTA TTT-TTA -TTTTTA T-TTTTA
17620959 TATTTT
1 T-TTTT
17620965 TTGTTTTGCT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
6 20 0.45
7 21 0.48
8 3 0.07
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTTTA
Found at i:17621005 original size:18 final size:18
Alignment explanation
Indices: 17620988--17621022 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
17620978 ATATTTTTTC
*
17620988 CTTT-TTTATTTTTATTT
1 CTTTCTTTATTTATATTT
17621005 CTTTCTTTATTTATATTT
1 CTTTCTTTATTTATATTT
17621023 TCATAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (18 bp):
CTTTCTTTATTTATATTT
Found at i:17621009 original size:22 final size:20
Alignment explanation
Indices: 17620897--17621023 Score: 78
Period size: 21 Copynumber: 6.0 Consensus size: 20
17620887 GTTTCATTTC
17620897 ATTTTTGTCTTTTTTATTTTT
1 ATTTTT-TCTTTTTTATTTTT
** **
17620918 A-TTTTGATTCATTATTTTT
1 ATTTTTTCTTTTTTATTTTT
*
17620937 ATTTCTTACTTTTTATATTTTAT
1 ATTT-TTTCTTTTT-TATTTT-T
* * **
17620960 ATTTTTTGTTTTGCT-TTAAT
1 ATTTTTTCTTTT-TTATTTTT
17620980 ATTTTTTCCTTTTTTATTTTT
1 ATTTTTT-CTTTTTTATTTTT
17621001 ATTTCTTTCTTTATTTATATTTT
1 ATTT-TTTCTTT-TTTAT-TTTT
17621024 CATAAATTTT
Statistics
Matches: 79, Mismatches: 17, Indels: 18
0.69 0.15 0.16
Matches are distributed among these distances:
19 11 0.14
20 15 0.19
21 23 0.29
22 21 0.27
23 9 0.11
ACGTcount: A:0.16, C:0.07, G:0.03, T:0.74
Consensus pattern (20 bp):
ATTTTTTCTTTTTTATTTTT
Found at i:17621636 original size:7 final size:7
Alignment explanation
Indices: 17621626--17621694 Score: 66
Period size: 7 Copynumber: 9.6 Consensus size: 7
17621616 ATTTTTGTCT
17621626 TTTTTTA
1 TTTTTTA
17621633 TTTTTTA
1 TTTTTTA
*
17621640 TTTTTGA
1 TTTTTTA
**
17621647 TTCATTA
1 TTTTTTA
17621654 TTTTTTA
1 TTTTTTA
17621661 TTTTCTTA
1 TTTT-TTA
*
17621669 CTTTTATA
1 -TTTTTTA
*
17621677 TTTTATA
1 TTTTTTA
*
17621684 TTTTTTG
1 TTTTTTA
17621691 TTTT
1 TTTT
17621695 GCTTTAATAT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
7 42 0.82
8 5 0.10
9 4 0.08
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.77
Consensus pattern (7 bp):
TTTTTTA
Found at i:17621694 original size:21 final size:21
Alignment explanation
Indices: 17621626--17621694 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 21
17621616 ATTTTTGTCT
*
17621626 TTTTTTATTTTTTA-TTTTTG
1 TTTTATATTTTTTATTTTTTG
* * *
17621646 ATTCATTATTTTTTATTTTCTTAC
1 TTTTA-TATTTTTTATTTT-TT-G
*
17621670 TTTTATATTTTATATTTTTTG
1 TTTTATATTTTTTATTTTTTG
17621691 TTTT
1 TTTT
17621695 GCTTTAATAT
Statistics
Matches: 37, Mismatches: 8, Indels: 7
0.71 0.15 0.13
Matches are distributed among these distances:
20 2 0.05
21 13 0.35
22 5 0.14
23 14 0.38
24 3 0.08
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.77
Consensus pattern (21 bp):
TTTTATATTTTTTATTTTTTG
Found at i:17621704 original size:27 final size:26
Alignment explanation
Indices: 17621651--17621720 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 26
17621641 TTTTGATTCA
* * *
17621651 TTATTTTTTATTTTCTTACTTTTATATT
1 TTATATTTT-TTTT-TTGCTTTAATATT
17621679 TTATATTTTTTGTTTTGCTTTAATATT
1 TTATATTTTTT-TTTTGCTTTAATATT
* *
17621706 TTTTCTTTTTTTTTT
1 TTATATTTTTTTTTT
17621721 ATTTCTTTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.11
27 22 0.61
28 10 0.28
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (26 bp):
TTATATTTTTTTTTTGCTTTAATATT
Found at i:17621725 original size:15 final size:16
Alignment explanation
Indices: 17621702--17621738 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
17621692 TTTGCTTTAA
17621702 TATTT-TTTCTTT-TT
1 TATTTATTTCTTTCTT
*
17621716 TTTTTATTTCTTTCTT
1 TATTTATTTCTTTCTT
17621732 TATTTAT
1 TATTTAT
17621739 ATTTTCATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
14 4 0.21
15 7 0.37
16 8 0.42
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (16 bp):
TATTTATTTCTTTCTT
Found at i:17622342 original size:7 final size:7
Alignment explanation
Indices: 17622332--17622399 Score: 57
Period size: 7 Copynumber: 9.6 Consensus size: 7
17622322 ATTTTTGTCT
17622332 TTTTTTA
1 TTTTTTA
17622339 TTTTTTA
1 TTTTTTA
*
17622346 TTTTTGA
1 TTTTTTA
**
17622353 TTCATTA
1 TTTTTTA
17622360 -TTTTTA
1 TTTTTTA
17622366 TTTTCTTA
1 TTTT-TTA
*
17622374 CTTTTTA
1 TTTTTTA
*
17622381 TATTTTA
1 TTTTTTA
*
17622388 TATTTTTG
1 T-TTTTTA
17622396 TTTT
1 TTTT
17622400 GCTTTAATAT
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
6 4 0.09
7 32 0.68
8 11 0.23
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:17623059 original size:7 final size:7
Alignment explanation
Indices: 17623049--17623143 Score: 52
Period size: 7 Copynumber: 13.4 Consensus size: 7
17623039 CATTTTTGAC
17623049 TTTTTTA
1 TTTTTTA
17623056 -TTTTTA
1 TTTTTTA
*
17623062 TTTTTGA
1 TTTTTTA
** *
17623069 TTCATCA
1 TTTTTTA
17623076 TTTTTTA
1 TTTTTTA
17623083 TTTTCTTA
1 TTTT-TTA
17623091 CTTTTTATA
1 -TTTTT-TA
*
17623100 TTTTATA
1 TTTTTTA
*
17623107 TTTTTTG
1 TTTTTTA
*
17623114 TTTTGCT-
1 TTTT-TTA
**
17623121 TTAATT-
1 TTTTTTA
17623127 TTTTTTA
1 TTTTTTA
17623134 TTTTTTA
1 TTTTTTA
17623141 TTT
1 TTT
17623144 CTTTCTTTAT
Statistics
Matches: 66, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
6 11 0.17
7 40 0.61
8 9 0.14
9 6 0.09
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:17623771 original size:7 final size:7
Alignment explanation
Indices: 17623761--17623830 Score: 68
Period size: 7 Copynumber: 9.6 Consensus size: 7
17623751 ATTTTTGTCT
17623761 TTTTTTA
1 TTTTTTA
17623768 TTTTTTA
1 TTTTTTA
*
17623775 TTTTTGA
1 TTTTTTA
**
17623782 TTCATTA
1 TTTTTTA
17623789 TTTTTTA
1 TTTTTTA
17623796 TTTTCTTA
1 TTTT-TTA
17623804 CTTTTTATA
1 -TTTTT-TA
*
17623813 TTTTATA
1 TTTTTTA
*
17623820 TTTTTTG
1 TTTTTTA
17623827 TTTT
1 TTTT
17623831 GCTTTAATTA
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
7 37 0.73
8 8 0.16
9 6 0.12
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.77
Consensus pattern (7 bp):
TTTTTTA
Found at i:17624476 original size:6 final size:7
Alignment explanation
Indices: 17624459--17624527 Score: 57
Period size: 7 Copynumber: 9.6 Consensus size: 7
17624449 ATTTTTGTCT
17624459 TTTTTTA
1 TTTTTTA
17624466 TTTTTTA
1 TTTTTTA
*
17624473 TTTTTTG
1 TTTTTTA
**
17624480 TTCATTA
1 TTTTTTA
17624487 TTTTTTA
1 TTTTTTA
*
17624494 TTCTCTTA
1 TT-TTTTA
*
17624502 CTTTTTA
1 TTTTTTA
*
17624509 TATTTTA
1 TTTTTTA
*
17624516 TATTTTTG
1 T-TTTTTA
17624524 TTTT
1 TTTT
17624528 GCTTTAATAT
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
7 37 0.79
8 10 0.21
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (7 bp):
TTTTTTA
Found at i:17624561 original size:16 final size:15
Alignment explanation
Indices: 17624535--17624574 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
17624525 TTTGCTTTAA
*
17624535 TATTTTTTCTTTTTT
1 TATTTTTTCTTTATT
17624550 TATTTCTTTCTTTATT
1 TATTT-TTTCTTTATT
*
17624566 TATATTTTC
1 TATTTTTTC
17624575 ATAAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (15 bp):
TATTTTTTCTTTATT
Found at i:17624842 original size:727 final size:731
Alignment explanation
Indices: 17623964--17625474 Score: 2855
Period size: 727 Copynumber: 2.1 Consensus size: 731
17623954 ATTTTTCTAA
17623964 TTTT-TCTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTC
1 TTTTCTCTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTC
17624028 TTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA
66 TTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA
17624093 TTTTTTATTTTTTCTTTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTT
131 TTTTTTATTTTTTCTTTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTT
17624158 TTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTT
196 TTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTT
17624223 CTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTT
261 CTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTT
17624288 GTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAAC-TTTCTCTTTTTTAATTTTTTG
326 GTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTG
*
17624352 TCCTTGAA-TTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTGTATTTTTT
391 TCCTTGAATTTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTCTATTTTTT
* * *
17624416 CAAATA-TTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTTTTTATTTTTTG
456 CAAATATTTTTTTTCTATTTTCTCGTTTAATTTCATTTTTG-CCTTTTTTATTTTTTA-TTTTTA
17624480 TTCATTATTTTTTATTCTCTTACTTTTTATATTTTATA-TTTTTGTTTTGCTTTAATA-TTTTTT
519 TTCATTATTTTTTATTCTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTT
17624543 CTTTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTT-TAT
584 CTTTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTCT-T
17624607 TTTCTTTTCTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTA
648 TTTCTTTTCTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTA
17624672 ACTCCTTTTCCTTTTAAAT
713 ACTCCTTTTCCTTTTAAAT
17624691 TTTTCTCTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTC
1 TTTTCTCTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTC
17624756 TTCGTTTT-AAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA
66 TTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA
17624820 TTTTTTA-TTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTT
131 TTTTTTATTTTTTCTT-TTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTT
17624884 TTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTT
195 TTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTT
17624949 TCTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTT
260 TCTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTT
17625014 TGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTT
325 TGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTT
*
17625079 GTCCTTGAATTTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTCTTTTTTT
390 GTCCTTGAATTTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTCTATTTTT
17625144 TCAAATATTTTTTTTCTATTTTCTCGTTTAATTTCATTTTTGCCTTTTTTATTTTTTATTTTTAT
455 TCAAATATTTTTTTTCTATTTTCTCGTTTAATTTCATTTTTGCCTTTTTTATTTTTTATTTTTAT
*
17625209 TCATTATTTTTTATTTTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTC
520 TCATTATTTTTTATTCTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTC
17625274 TTTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTCTTTT
585 TTTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTCTTTT
17625339 TCTTTTCTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAAC
650 TCTTTTCTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAAC
17625404 TCCTTTTCCTTTTAAAT
715 TCCTTTTCCTTTTAAAT
17625421 TTTTCT-TTTTTTTTACTTATTTTTTCATGTGC-TTCATATTTTCTTTTGTTTTCA
1 TTTTCTCTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCA
17625475 TATTTTTGCC
Statistics
Matches: 770, Mismatches: 6, Indels: 15
0.97 0.01 0.02
Matches are distributed among these distances:
726 8 0.01
727 289 0.38
728 161 0.21
729 120 0.16
730 191 0.25
731 1 0.00
ACGTcount: A:0.16, C:0.12, G:0.04, T:0.68
Consensus pattern (731 bp):
TTTTCTCTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTTTTCACTTTTTTTC
TTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATATTTTTGCCTCTTCA
TTTTTTATTTTTTCTTTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTTCTTGTTTCCATTTT
TTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTCATTTTTATTCTTTT
CTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAATTCTTATAGTTTTTTTT
GTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTTTTTTAATTTTTTG
TCCTTGAATTTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTTTTTCTATTTTTT
CAAATATTTTTTTTCTATTTTCTCGTTTAATTTCATTTTTGCCTTTTTTATTTTTTATTTTTATT
CATTATTTTTTATTCTCTTACTTTTTATATTTTATATTTTTTGTTTTGCTTTAATATTTTTTTCT
TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTCTTTTT
CTTTTCTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACT
CCTTTTCCTTTTAAAT
Found at i:17625198 original size:7 final size:7
Alignment explanation
Indices: 17625188--17625256 Score: 68
Period size: 7 Copynumber: 9.6 Consensus size: 7
17625178 CATTTTTGCC
17625188 TTTTTTA
1 TTTTTTA
17625195 TTTTTTA
1 TTTTTTA
17625202 -TTTTTA
1 TTTTTTA
**
17625208 TTCATTA
1 TTTTTTA
17625215 TTTTTTA
1 TTTTTTA
17625222 TTTTCTTA
1 TTTT-TTA
17625230 CTTTTTATA
1 -TTTTT-TA
*
17625239 TTTTATA
1 TTTTTTA
*
17625246 TTTTTTG
1 TTTTTTA
17625253 TTTT
1 TTTT
17625257 GCTTTAATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
6 6 0.12
7 31 0.61
8 8 0.16
9 6 0.12
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (7 bp):
TTTTTTA
Found at i:17625283 original size:16 final size:18
Alignment explanation
Indices: 17625240--17625303 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 18
17625230 CTTTTTATAT
*
17625240 TTTATATTTTTTGT-TTTGC
1 TTTATATTTTTT-TCTTT-A
17625259 TTTAATATTTTTTTCTTT-
1 TTT-ATATTTTTTTCTTTA
*
17625277 TTT-TATTTCTTTCTTTA
1 TTTATATTTTTTTCTTTA
17625294 TTTATATTTT
1 TTTATATTTT
17625304 CATAAATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
16 12 0.31
17 3 0.08
18 8 0.21
19 4 0.10
20 12 0.31
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTATATTTTTTTCTTTA
Found at i:17625619 original size:19 final size:19
Alignment explanation
Indices: 17625597--17625663 Score: 91
Period size: 19 Copynumber: 3.6 Consensus size: 19
17625587 TTCATAAATC
17625597 TTTTGTCTTTTGATTTTAT
1 TTTTGTCTTTTGATTTTAT
*
17625616 TTTTGTCTTTTGATTCTA-
1 TTTTGTCTTTTGATTTTAT
* * *
17625634 TTTTGTCGTTTCATTTCAT
1 TTTTGTCTTTTGATTTTAT
17625653 TTTTGTCTTTT
1 TTTTGTCTTTT
17625664 TTTATTTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
18 14 0.34
19 27 0.66
ACGTcount: A:0.09, C:0.10, G:0.10, T:0.70
Consensus pattern (19 bp):
TTTTGTCTTTTGATTTTAT
Found at i:17625671 original size:7 final size:7
Alignment explanation
Indices: 17625661--17625730 Score: 59
Period size: 7 Copynumber: 9.6 Consensus size: 7
17625651 ATTTTTGTCT
17625661 TTTTTTA
1 TTTTTTA
17625668 TTTTTTA
1 TTTTTTA
*
17625675 TTTTTGA
1 TTTTTTA
**
17625682 TTCATTA
1 TTTTTTA
*
17625689 TTTCTTA
1 TTTTTTA
17625696 TTTTCTTA
1 TTTT-TTA
17625704 CTTTTTATA
1 -TTTTT-TA
*
17625713 TTTTATA
1 TTTTTTA
*
17625720 TTTTTTG
1 TTTTTTA
17625727 TTTT
1 TTTT
17625731 GCTTTAATAT
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
7 36 0.72
8 8 0.16
9 6 0.12
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:17625833 original size:19 final size:19
Alignment explanation
Indices: 17625811--17625858 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
17625801 ATGTTTTGGA
*
17625811 TTTTTTTATTTTTC-TTTT
1 TTTTTTTATTTATCGTTTT
17625829 CTTTTTTTATTTATCGTTTT
1 -TTTTTTTATTTATCGTTTT
*
17625849 TTTTTCTATT
1 TTTTTTTATT
17625859 GTATTTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 22 0.85
20 4 0.15
ACGTcount: A:0.08, C:0.08, G:0.02, T:0.81
Consensus pattern (19 bp):
TTTTTTTATTTATCGTTTT
Found at i:17626402 original size:26 final size:26
Alignment explanation
Indices: 17626363--17626415 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17626353 TCGGTCCGAT
*
17626363 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
17626389 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
17626415 C
1 C
17626416 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:17626833 original size:78 final size:78
Alignment explanation
Indices: 17626704--17626865 Score: 256
Period size: 78 Copynumber: 2.1 Consensus size: 78
17626694 TGCCAATGCC
* *
17626704 ATTTTTATGACTTGTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCAGGGCAAGA
1 ATTTTTACGACTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGA
*
17626769 CGACTC-TTATTTT
66 CGACTCATT-TTCT
*
17626782 ATTTTTACGACTTGTAAATTCATACAATAG-TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
1 ATTTTTACGACTTGTAAATTCATACAAT-GCTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAG
17626846 ACGACTCATTTTCT
65 ACGACTCATTTTCT
17626860 ATTTTT
1 ATTTTT
17626866 CATGATTTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
78 75 0.96
79 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (78 bp):
ATTTTTACGACTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGA
CGACTCATTTTCT
Found at i:17630884 original size:26 final size:26
Alignment explanation
Indices: 17630855--17630907 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17630845 CCGGTCTGAT
* *
17630855 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17630881 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17630907 C
1 C
17630908 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17631778 original size:26 final size:25
Alignment explanation
Indices: 17631749--17631800 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
17631739 CCGATCCGAT
17631749 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
17631775 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
17631800 C
1 C
17631801 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:17631979 original size:894 final size:892
Alignment explanation
Indices: 17627327--17633634 Score: 7810
Period size: 894 Copynumber: 7.1 Consensus size: 892
17627317 CTTGTCCGAT
* * * * *
17627327 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** *
17627392 CGGCCAGAGGGGCGAGATGCGTAAGCTGGGGATCGATCGGGTCCCCCTCCGCATGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * *
17627457 TGCTGCCATAACCCTC-GATCCGGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
17627521 ACCGACGAAACGA---A-CGGGCGGGC--A--CTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGAGCGGGCGGGCGGAGGCTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* ** *
17627578 GTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTACCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
** *
17627643 TTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** *
17627708 TCATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATGTTTTAAAATTTTTTCGG
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
17627773 ATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
17627838 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
17627903 CACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAAAGCTCTTTACGGGGGTGCGAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
17627968 TTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTATCAGCACCCATTGGACATCCT
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
* * * * * *
17628033 GTGCACACACCCCTCTCGGCCCGCCCGATCGTCGGAACCCTAATGTCGCCGGTCAAGTTCTCTGA
715 GTGCGCACACCCC-C-CTGCCCCCCCGATCGCCGGAACCCCAA--T-GCCGGTC--GTTGTC--A
* * * ** * *
17628098 TGATACTCCAACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCA
771 GGATTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
17628163 TGTTGCTGCTGTAACTCTCGGTCCGGTCCGATCTTGGACTGGGAATGAACTCCGTATG
836 TG-TGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17628221 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCATGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
17628286 AGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGTCGAGTCCCCCTTTGGGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * ** * *
17628351 TGTTGTCGCAACCCCCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGACAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17628416 CCAACGAAACGATCGAGCGGGCGGGCAGGCAGGCACTACGCCTGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGAGCGGGCGGGC-GG-AGG--CTACGTCGGCCAGAGAGACGGGATGCGCAA
* * ** *
17628481 GTCATGGATCGATAGGGTGGTAGGTTAGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17628546 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
17628611 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAAATTATT
387 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTT
* * * *
17628676 TGGGAAGGATTTTTGGCCCTAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
17628741 AAAATTCAACTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAATGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17628806 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
17628871 GTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
* * *
17628936 TCATGTGCGCACACCCCCCCG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTC
711 TCATGTGCGCACACCCCCCTGCCCCCCCGATCGCCGGAACCCCAATG-C--CGGTC--GTT-GTC
* * * *
17629000 CGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAAT---G---C-G-GCATGCCCGAGCCCAG
770 AG-GATTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * * * * *
17629057 TATGTGCTGCCGCAACCCTTGATTCGATCTGATCTTAGACTAGGAATGAACTCCGTATG
834 CATGTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
17629116 CTTAGATTGGGAATCAACTTTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
17629181 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTGCATGCTG-CTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GATC
* * * *
17629245 TTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGCACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
17629310 ACCGACGAAACGAGCGAGTGGACGGCCGGCCGAGCACTATGTCGGCCAAAGAGTCGGGATGCGCA
195 ACCGACGAAACGAGCGAG-CG--GGCGGGCGGAG-GCTACGTCGGCCAGAGAGACGGGATGCGCA
17629375 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
17629440 ATTTTTATGGCTTGTAGATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** * *
17629505 CGACTTGTTTTCTATTTTTCACGACTTTCAAAACTTTTTGCGGTTCGAGATTTTTT-AAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
*
17629569 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
17629634 AAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
17629699 CAGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTTAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
17629764 GTTCTTGAGGTTTGATAAGGGATA-GGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
* * * ** ** *
17629828 TCATGTGCGCGCACCCCTCTGTCCCCTCCGATCGCTAGAACCGTAATGCTGTCGGTCAGGTTCTC
711 TCATGTGCGCACACCCCCCTG-CCCCCCCGATCGCCGGAACCCCAATGC---CGGTC--GTTGT-
* * * ** * * *
17629893 CGACGATGCTCCGACGATGGTG-CTCGGTGAAGAAAAATGCTGCACCAGCAAATGCCCGAGCCCA
769 C-AGGATTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
17629957 GCATGTGCTG-TCGCAA-CC-C--T-CG----G-TC-----C-------G-A-TCCG-AT-
833 GCATGTGCTGCT-GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
*
17629991 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
17630056 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCTCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
17630121 TGCTGCCACAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17630186 TCGACG-AA--A-CGAGCGGACGGGC--A--CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGAGCGGGCGGGCGGAGGCTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
17630243 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATACCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
17630308 TATGGCTTGTAAATTCATACAATGGTCCCTTAA-CCTTCATGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * * *
17630372 CGTTTTCTATTTTTCATAATTTTCAAAAATTTTTACGGTTCGGGATTTTTTTAAATTTTTTTGGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * *
17630437 AGGAGTTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTTTTGTTGGCTTGCAC-CAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
17630501 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
17630566 ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * ** *
17630631 TGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTA-CATGAACCCATCACACATCCT
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-GCACCCATTGCACATCAT
* * * * *
17630695 GTGCGCACACCCCCCCGGCTCCCCCGATCGTCGGAACCCCAATGCGGCCGGTCAGGTTCTCCGGT
715 GTGCGCACA-CCCCCCTGCCCCCCCGATCGCCGGAACCCCAAT---GCCGGTC--GTTGT-CAG-
* * * ** *
17630760 GATGCTCCGACGATTGCGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTTGAGCCTAGCAT
772 GATTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
17630825 GTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAGTGAACTCTGTATG
837 GTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17630881 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAACCAAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
17630946 CGGCCAGAGGGGTGGGATGCTCAAGCCGGGGATC-GACTGGGTCCCCCTCTACGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGTCGATC
* * * *
17631010 CTGCTGCCGCAACACTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
17631075 ATCGACGAAACGAGCGGGCGGGCGGGCAGGATGGCATTACATCAGCCAGAGAGACGGGATGCGCC
195 ACCGACGAAACGAGCGAGCGGGCGGGC-GGA-GGC--TACGTCGGCCAGAGAGACGGGATGCGCA
* * * ** *
17631140 AGTCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATACC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
17631205 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
17631270 TGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
17631335 TCGGAAAGAGTTTTGGTCCCAAACTTGGTAGACGTGATCATTGTATCTTTT-TTTGCATGCACAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAA
* * * *
17631399 AAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTGCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
17631464 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
17631529 AGTTCTCGAGGTTTGATGAGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
645 AGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
* * *
17631594 CATCATGTGTGCACACCCACCCAGCCCCCCCGATCGCCGGAACCCCAATGCC-G-C-TTGTCAAG
709 CATCATGTGCGCACACCC-CCCTGCCCCCCCGATCGCCGGAACCCCAATGCCGGTCGTTGTCAGG
*
17631656 -TTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATG
773 ATTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
17631720 TGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
838 TGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17631775 CTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
17631839 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGATCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
17631904 TGCTACCGTAACCCTCAGTCCGGTCCGATCTTAGGCTGGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17631969 ACCAACGAAACGAGCGAGCGAGC--GC-----C-ACGCCGGCCAAAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGAGCGGGCGGGCGGAGGCTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
*
17632026 GTGGATCGATAGGGT-GTAGGT-GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
17632089 TTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** **
17632154 TCCTTTTCTATTTTTAACAATTTTTGAAACTTTTTACGGTTTTGGATTTTTTAAAATTTTTTCGG
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
17632219 AAGGAG-TTTGGACCCAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
17632283 TTCAGCTAAAATCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
17632348 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
17632413 TGGAGGTTTGATGAGGGATA-GGGG-CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
* *
17632476 GTGCGCACACCCCCCCTGGCCCCCCGATCGCCGAAACCCCAATGCCACCGGTCAGGTTGTCCAGC
715 GTGCGCACA-CCCCCCTGCCCCCCCGATCGCCGGAACCCCAATG---CCGGTC--GTTGT-CAG-
** * * * * * * *
17632541 GAAGCTCCGGCGAAAGGTGCCCCGGCGAAGAAAAATATGGCACCAGCACATGCGCAAGCCCGGCA
772 GATTCTCCGACG-ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
*
17632606 TGTGCTG-TCGCAA-------TCC--T-C--TGTT---C---G---G---TCCG-AT-
836 TGTGCTGCT-GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
17632637 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
17632702 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGT-CCCC-CT-C-TGC---CGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * ** * *
17632760 AGTTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
17632825 CTGACCAAACGAGCGGGCGGGCGGGCGGGCGGGCGCTACGCCTGCTAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGAGCGGGCGGGC--G-GAG-GCTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
17632890 GCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17632955 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
17633020 GACTCGTTTTCTATTTTTCATGATTTTTGATACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * ** * *
17633085 CAGTAGGAGTTTTCACCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
17633150 ACATTCAGTTAAAAACTTGAAGTGTAGAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
17633215 AGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
17633280 TTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCTATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
* * *
17633344 CATGTGCGCACA-CCCCCTGGCCCCCCGATCACCGGAACCCCAATGCCGCTGGTCAGGTTCTCCA
712 CATGTGCGCACACCCCCCTGCCCCCCCGATCGCCGGAACCCCAATG-C-C-GGTC--GTTGT-C-
* * * * ** *
17633408 ACGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAAC
770 AGGATTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * * * * *
17633473 ATGTACTACCGCAACCCTTGGTCCGATCCAATCTTAGA-TCGAGAATGAACTCCGTATG
835 ATGTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACT-GGGAATGAACTCCGTATG
* * * * *
17633531 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GG-GCGCTC-
* * *
17633596 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
63 A-GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
17633635 ATAGGGTGGT
Statistics
Matches: 4754, Mismatches: 497, Indels: 322
0.85 0.09 0.06
Matches are distributed among these distances:
855 44 0.01
856 35 0.01
857 2 0.00
859 3 0.00
860 1 0.00
861 2 0.00
862 247 0.05
863 368 0.08
864 57 0.01
865 2 0.00
866 5 0.00
867 44 0.01
868 67 0.01
869 220 0.05
870 195 0.04
871 54 0.01
872 1 0.00
873 2 0.00
874 4 0.00
875 184 0.04
876 81 0.02
877 12 0.00
878 13 0.00
879 192 0.04
880 168 0.04
881 10 0.00
882 40 0.01
884 4 0.00
885 3 0.00
886 4 0.00
887 9 0.00
888 60 0.01
889 5 0.00
890 182 0.04
891 4 0.00
892 63 0.01
893 355 0.07
894 455 0.10
895 423 0.09
896 28 0.01
897 9 0.00
898 48 0.01
899 1 0.00
900 5 0.00
901 29 0.01
902 129 0.03
903 134 0.03
904 210 0.04
905 82 0.02
906 197 0.04
907 262 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGGGCGGGCGGAGGCTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
TGCGCACACCCCCCTGCCCCCCCGATCGCCGGAACCCCAATGCCGGTCGTTGTCAGGATTCTCCG
ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTG
CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17633534 original size:26 final size:26
Alignment explanation
Indices: 17633505--17633557 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17633495 CCGATCCAAT
17633505 CTTAGA-TCGAGAATGAACTCCGTATG
1 CTTAGACT-GAGAATGAACTCCGTATG
*
17633531 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17633557 C
1 C
17633558 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17634256 original size:735 final size:734
Alignment explanation
Indices: 17632789--17634324 Score: 2277
Period size: 735 Copynumber: 2.1 Consensus size: 734
17632779 CCGGTCCGAT
* * *
17632789 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACCAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GCGGGCGGG
* * * *
17632854 CGGGCGCTACGCCTGCTAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGT
58 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGAT
**
17632919 TTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
123 TTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTACAGCTTGTAAATTCATACAATGG
* * **
17632984 TCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
188 TCCCTTAAGCCGTCACGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCATGATTTTCA
* * * * * *
17633049 ATACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGTAGGAGTTTTCACCCCAAACTTTGTA
253 AAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTCACCCAAAACTTGGTA
* * * * * *
17633114 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGTTAAAAACTTGAAGTGTAGAA
318 GACGTGATCCTTGTACTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
17633179 GATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
383 GATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAAC
* *
17633244 TTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
448 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCC
* *
17633309 AATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATC
513 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
*
17633374 ACCGGAACCCCAATGCCGCTGGTCAGGTTCTCCAACGATGCTTCGGCGATGGTGCCCCGACGAAG
578 ACCGGAACCCCAATGCCGCTGGTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCCGACGAAG
** * * *
17633439 AAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTACTACCGCAACCCTTGGTCCGATCCAA
643 AAAAATACGGCACCAGCACATGCCCAAGCCCAACATGTACTACCACAACCCTCGGTCCGATCCAA
17633504 TCTTAGATCGAGAATGAACTCCGTATG
708 TCTTAGATCGAGAATGAACTCCGTATG
*
17633531 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
*
17633596 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGATTTAGGCAC
* * *
17633661 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTGCAGCTTGTAAATTCATACAATGGTCCCTTAA
131 ATCTTCATATTTCTCCATGCCAATGCCATTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
17633726 GCCTTCATGTGAAGTTTCATGGGAACACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTT
196 GCCGTCACGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTT
* * * * **
17633791 TGCATTTCGAGATTTTTTAAAAATTTTTTCGGAAGGATTTTTGGCCCAAAACTTGGTAGACGTGA
261 TACAGTTCGAGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTCACCCAAAACTTGGTAGACGTGA
17633856 TCCTTGTACTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
325 TCCTTGTACTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
17633921 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAA
390 TGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAA
*
17633986 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATA
455 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATA
*
17634051 AGGGCCAAGTACCA-CACCCATCGCACATC-TGTGCGCACACCCCCCGGCCCCCCCGATCATCGG
519 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCACCGG
* * * * *
17634114 AACCCTATTGCCGTTGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAA
583 AACCCCAATGCCGCTGGTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
** * * ** * * * **
17634179 TACGGTGCCAGCATATGCCCAAGCCCAGCATGTGGTGCCACAACCCTCGGTCTGGTCTGATCTTA
648 TACGGCACCAGCACATGCCCAAGCCCAACATGTACTACCACAACCCTCGGTCCGATCCAATCTTA
* *
17634244 GA-CTGGGAATGAACTCGGTATG
713 GATC-GAGAATGAACTCCGTATG
* * *
17634266 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
17634325 CTCAGCAGGC
Statistics
Matches: 715, Mismatches: 75, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
734 225 0.31
735 419 0.59
736 26 0.04
742 45 0.06
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (734 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGATTTAGGCAC
ATCTTCATATTTCTCCATGCCAATGCCATTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAA
GCCGTCACGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTT
TACAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTCACCCAAAACTTGGTAGACGTGAT
CCTTGTACTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAAC
CCCAATGCCGCTGGTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATAC
GGCACCAGCACATGCCCAAGCCCAACATGTACTACCACAACCCTCGGTCCGATCCAATCTTAGAT
CGAGAATGAACTCCGTATG
Found at i:17634276 original size:26 final size:26
Alignment explanation
Indices: 17634240--17634292 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17634230 CTGGTCTGAT
*
17634240 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17634266 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17634292 C
1 C
17634293 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17635961 original size:878 final size:873
Alignment explanation
Indices: 17633535--17636383 Score: 3969
Period size: 878 Copynumber: 3.2 Consensus size: 873
17633525 CGTATGCTTA
*
17633535 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC--G-GG-CGGGTGGG
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGGG
*
17633592 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ***
17633657 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTGCAGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
17633722 TTAAGCCTTCATGTGAAGTTTCATGGGAACACGACTCATTTTCTATTTTTCATGATTTTCAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * * *
17633787 TTTTTGCATTTCGAGATTTTTTAAAAATTTTTTCGGAAGGATTTTTGGCCCAAAACTTGGTAGAC
261 TTTTTGCAGTTCGGGATTTTTT-AAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGAC
*
17633852 GTGATCCTTGTACTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
17633917 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTG
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTG
*
17633982 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAA
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
* *
17634047 TATAAGGGCCAAGTACCA-CACCCATCGCACATC-TGTGCGCACACCCCCCGGCCCCCCCGATCA
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGG-CCCCCCGATCG
* ** *
17634110 TCGGAACCCTATTGCCGTTGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGA
583 TCGGAACCCTAATGCCG-TGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGA
** ** * * * *
17634175 AAAATACGGTGCCAGCATATGCCCAAGCCCAGCATGTGGTGCCACAACCCTCGGTCTGGTCTGAT
647 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-TGGTCTGA-
*
17634240 CTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
706 -TT---C--------AA-----TA---TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
* * * **
17634305 ACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGAAGCGCAAGCCAGGGATCGGTCG
751 ACGAAACGAGCATGCGGGCGCTCAGCTGGCCAGAGGGGTGGGATTCGCAAGCCAGGGATCGGTCG
* * * * * * ** * *
17634370 AGTCCCCCTCTGCGTGATGCCGATCCTGCTGCTGCAACCATCTATCCAGT-TCGATCTTA
816 GGTCCCTCTCTGCATGCTGCCCATCCTGCTGC-GCAACCCTCGGTCCGGTCT-GATCTTG
* * * * ** * *
17634429 GACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCAGGTAGGCGGGCGGACGGG
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGGG
* * * * * *
17634494 CACTACACCGGCCAAAGAGACAGGATGCTCAAGCCGCGGATCGATAGGCTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
17634559 GCACATCTTCATATTTCTGTATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
17634624 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* *
17634689 TTTTTGCAGTTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACA
261 TTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
* * *
17634754 TGATCCTTGTATTTTTATTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACTAGATT
326 TGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
17634819 TTGTGACCATTTGAAAAAACTGTCCCCATTTCAGAAACTTTAATGGCTACTGACAGCAAACCTGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGT
17634884 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
*
17634949 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCGGCTCCCTCGATCG
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCC-CGGC-CCCCCGATCG
* * * *
17635014 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGTTCCGACGATTGTGCCCCGACGAAGA
583 TCGGAACCCTAATGCCGT-GGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGA
* *
17635079 AAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCTGATTCAAT
647 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCTGATTCAAT
* *
17635144 ATTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGC
712 ATTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * ** *
17635209 TGGCCAGATGGGTGGGATTCGCAAACCTGGGATCGACCGGGTCCCTCTTTGCATGCTGCCCATCC
777 TGGCCAGAGGGGTGGGATTCGCAAGCCAGGGATCGGTCGGGTCCCTCTCTGCATGCTGCCCATCC
*
17635274 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTG
842 TGCTG-CGCAACCCTCGGTCCGGTCTGATCTTG
* * * *
17635307 GACTGGGAATGAACTCCGTATGTCTAAGCCAACCAACGAAACGAGCGGGCGGGCAGATGGGCGGG
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGGG
* *
17635372 CACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAA
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** *
17635437 GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * **
17635502 TTAATCCTTCATGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * **
17635567 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTATTAGACG
261 TTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
* **
17635632 TGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAATTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
17635697 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAGCAAACCAGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGT
*
17635762 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGACAGGGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
17635827 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTATGCACACCCCCCAGGCCCCCCAGATTG
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC-GGCCCCCC-GATCG
* * * *
17635892 TTGGAACCCTAATACCGCTAGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCCGACGAAGA
583 TCGGAACCCTAATGCCG-TGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * * * *
17635957 AAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACACTTGGTCCGATCCGAT
647 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCTGATTCAAT
* * * *
17636022 CTTAGACTGTGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATAG-GGGTGCTCAG
712 ATTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCAT-GCGGGCGCTCAG
* *
17636086 -TCGGCCAGAGGGGTGGGATTCGCAAGTCGGGGATCGGTCGGGTCCCTCTCTGCATGCTGCCCAT
776 CT-GGCCAGAGGGGTGGGATTCGCAAGCCAGGGATCGGTCGGGTCCCTCTCTGCATGCTGCCCAT
* *
17636150 CTTGTTGCCGCAACCCTCGGTCCGGTCTGATCTTG
840 CCTGCTG-CGCAACCCTCGGTCCGGTCTGATCTTG
* *
17636185 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGACGGGCGGG
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGGG
* *
17636250 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
17636315 GCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
17636380 TTAA
196 TTAA
17636384 TCCTGTGTGC
Statistics
Matches: 1751, Mismatches: 183, Indels: 58
0.88 0.09 0.03
Matches are distributed among these distances:
877 6 0.00
878 1100 0.63
879 4 0.00
881 2 0.00
886 2 0.00
894 42 0.02
897 2 0.00
898 1 0.00
899 8 0.00
900 7 0.00
901 239 0.14
902 217 0.12
903 18 0.01
904 103 0.06
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (873 bp):
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
TTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGTCG
GAACCCTAATGCCGTGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCTGATTCAATATTA
GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCTGGC
CAGAGGGGTGGGATTCGCAAGCCAGGGATCGGTCGGGTCCCTCTCTGCATGCTGCCCATCCTGCT
GCGCAACCCTCGGTCCGGTCTGATCTTG
Found at i:17637539 original size:26 final size:26
Alignment explanation
Indices: 17637488--17637540 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17637478 TCGGTCCGAT
**
17637488 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAATATG
*
17637514 CTTAGACTGGGAATGAATTCAATATG
1 CTTAGACTGGGAATGAACTCAATATG
17637540 C
1 C
17637541 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAATATG
Found at i:17638420 original size:26 final size:26
Alignment explanation
Indices: 17638391--17638443 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17638381 CCAGTCTGGT
17638391 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17638417 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17638443 C
1 C
17638444 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17638846 original size:902 final size:902
Alignment explanation
Indices: 17636413--17641051 Score: 6209
Period size: 905 Copynumber: 5.1 Consensus size: 902
17636403 CATTTTTATG
* * * *
17636413 CCATCGCACATCATGTGCGCACACCCCCACGGCCCCCCCGATC-GTCGAAACCCCAATGTCGTCG
1 CCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCACT-GGAACCCCAATGCCGCCG
* * * ** **
17636477 GTCAGGTTCTCTGTCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAACACCAGCACAT
64 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * *
17636542 GCCCGAGCCCAGTATGTGCTGCCGTAACCCAT-GGTCCGATCCGATCTTTGACTGGGAATGAACT
129 GCCCAAGCCCAGCATGTGCTGCCGTAACCC-TCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * * *
17636606 CCGTATGCTGAGACTAGAAATAAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
193 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * ** *
17636671 GCTCAGCCGACCAAAAGGGCGGGATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTGTGTGTTG
258 GCTCAGTCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTG
* * * ** * *
17636736 CTGATCCTGTTGCCATAACCCTC-GATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCC
322 CCGATCCTGCTACCGCAACCCTCAG-TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * *
17636800 TAAACCAACCGATG----GAATGAGTGGGCAGCCGAGCGGGCACTACGCTGGCCAGAGAGACGGG
386 TAAGCCAACCGACGAAACGAACGAGCGGGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGG
** * * * ***
17636861 ATGCGCAAGCCGTGGATCGATTTGGTGGTAGGTGGGTTTAGGTACATCTTCATTTTTTTGTGTGC
451 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
*
17636926 CAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
516 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * ** *
17636991 GGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAA
581 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
** * *
17637056 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGGCAT
646 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCAT
*
17637121 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
711 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
17637186 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGG
776 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
17637251 GGTGTGATTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCAC
841 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* ** * *
17637313 CCATCGCACATCATGTGCGCACACCCGCCCCGGCCCCCCTGATCGTTGAAACCCCAATACCGCCG
1 CCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCGATCACTGGAACCCCAATGCCGCCG
* *
17637378 GTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAAAGCGGCACCAGCACAT
64 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * *
17637443 GCCCGAA-CCCAGCATGTGATGACGCAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACT
129 GCCC-AAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* ** * * **
17637507 CTGTATGCTTAGACTGGGAATGAATTCAATATGCCCAAGTCAACCCACAAAATAAGCGTGCGGGC
193 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
** * * * *
17637572 ATTCAGTCAGCCAGAGGGGCGAGAAGCGCAAGACGGGGATCGGTCGGGTCCCCCTCTACGTGCTG
258 GCTCAGTCGGCCAGAGGGGCG-GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTG
* * * * * *
17637637 CTGATCCTACTATCGCAACCCTCGGTCC-GATCTGATCTTAGACTGGTAATGAACTCCGTATGCC
322 CCGATCCTGCTACCGCAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
17637701 TAAGCCAACCGACGAAACGAACGGGCGGGCAGGCCGGCGGGCACTACACCGGCCAGAGAGACGGG
386 TAAGCCAACCGACGAAACGAACGAGCGGGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGG
* * * * * *
17637766 ATGCGTAAGCCGTCGATTGATAGAGTGATAGGTGGGTTTAGGCACATCTTCGTATTTCTACATGC
451 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
* *
17637831 CACTACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
516 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
17637896 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAA
581 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* ** * ** *
17637961 AATTTTTTCGAAAAAATTTTTGGAACTAAACTTGGTAAA-ACTGATCCTTGTATTTTTGTTGGCA
646 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAACA-TGATCCTTGTATTTTTGTTGGCA
* * * *
17638025 TGCGCAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGT
710 TGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
17638090 CCCCATTTCAGACACTTTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
775 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
17638155 GGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCAC
840 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
*
17638218 CCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCACTGGAACCCCAATGCCGCCGGT
1 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACTGGAACCCCAATGCCGCCGGT
* * * * * *
17638283 TAGGTTCTCTGACGATGCTCCAGCGATGGTGCCCTGACGAAGAAAAATGTGGCACCAACACATGC
66 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * * *
17638348 TCAAGCCTAGCATGTGCTGCCGTAATCCTCGGTCCAGTCTGGTCTTAGACTGGGAATGAACTCTG
131 CCAAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTG
* * *
17638413 TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCT
196 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
17638478 CAGCCGGCCAGAGGGGCAGGATGTGTAA-CCGGGGATCGATCGGGTCCCCCTCTACGTACTACCG
261 CAGTCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCG
* * * * **
17638542 GTCCTGCTATCGCAACCCTCAGTCCGGTTCAATCTTAGATTGGGAATTCACTCCGTATGCCTAAG
325 ATCCTGCTACCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
17638607 CCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGAGCACTACGTCAGCCAGAGAGACGGGATGC
390 CCAACCGACGAAACGAACGAGCGGGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGC
*
17638672 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
455 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* *
17638737 GCCATTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCA
520 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
*
17638802 GGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAACA-
585 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA-AT
*
17638866 TTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCA
649 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCA
*
17638931 CAAAAAAATTCAGCTAAAAACTTAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
714 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
17638996 ATTTTAGACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
779 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * **
17639060 GTGAGTTCTCGAGGTTCGATGAGGAATAGGGGGCCAATATAAGAGCCAAGTACCAGGTC
844 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * * * *
17639119 CCATTGCACATCATGTGTGCACACCCCCCGG-CCCCCCAATCACCGGAACCCTAATACAGTCGGT
1 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACTGGAACCCCAATGCCGCCGGT
* * ** * *
17639183 CAGGTTCTCCGGCAATGCTCCGATGATGGTGCCCCGACGAAGAGAAATACGGCACCAGCACATGC
66 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * * *
17639248 CCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCG
131 CCAAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTG
* * * * *
17639313 TATGCTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCGTGCAGGCACT
196 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * ** * * * * * **
17639378 CAGTCGGCCAGAGGGGCGGTATGCACAAGCTGACGATCGGTCGGGTCCCACTTTGCATGCTATCG
261 CAGTCGGCCAGAGGGGCGG-ATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCG
* * * *
17639443 ATCCTGCTACCGTAATCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
325 ATCCTGCTACCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
17639508 CCAACAGACG--A--AACGAGCGGGC-GG-GTG-G-GCACTACGCCGGTCAGAGAGATGGGATGT
390 CCAACCGACGAAACGAACGAGCGGGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
17639565 ACAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
455 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* *
17639630 GCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
520 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * * *
17639695 AGACTACTCGTTTTCTATTTTTTACGATTTTTGAAATTTTTTACGGTTCGGGATTTTTTATAACT
585 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * * * *
17639760 TTTTCAGAAGGTGTGTTGGCTCCAAACTTGGTAGACATGATCCTTGTATTTTCT-TTGCCATGCA
650 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTT-TGTTGGCATGCA
* * * *
17639824 CAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTTTGATCATTTGAAAAAAACTGTCCC
714 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCC
* * * *
17639889 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAACGTGG
778 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
17639954 TGTGAGTTCTTGAGGTTTAATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACTAGCAC
843 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
17640014 CAATCACACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCACCGGAACCCTAATGCCGTCG
1 CCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCACTGGAACCCCAATGCCGCCG
** * * * *
17640079 GTCAGGTTCTTTGGCGATGCTCCGGCGATGGTGCCCTGGCGAAGAACAATGCGGCACCAGCACAT
64 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * *
17640144 GCCCGAGCCCAGCATGTGCTGTCGTAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACT-
129 GCCCAAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
*
17640208 TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGC
194 T-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
17640273 GCTCAGTCGGCCAGAGGGGCAGGATGCGCAA-CTGGGGATCGATTGGGTCCCCCTCTACATACTG
258 GCTCAGTCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTG
* * * * * **
17640337 TC-AGTCCTGCTGCCGCAACCCTCAGTCCAGTTCCATCTTAGATTGGGAATTCACTCCGTATGCC
322 CCGA-TCCTGCTACCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
17640401 TAAGCCAACCGATGAAACGAGCGAGCGGGCGGGCAGGCGAGCACTACGTCAGCCAGAGAGACGGG
386 TAAGCCAACCGACGAAACGAACGAGCGGGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGG
*
17640466 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
451 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
* *
17640531 CAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
516 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
17640596 GGCAGGACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTCGGGATTTTCTAA
581 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* * * *
17640661 AAATTTTTCGGAAGGAGTTTTGGTCCCAAACTTAGTAAACGTGATCCTTGTATTTTTGTTGGCAT
646 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCAT
17640726 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
711 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
17640791 CCCATTTTAGACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGG
776 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
17640856 GGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAATACCAGCAC
841 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
17640918 CCATCGCACATCATGTGCGCACACCCCCC-GACCCCTCGATCACTGGAACCCCAATGCCGCCGGT
1 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACTGGAACCCCAATGCCGCCGGT
* *
17640982 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGC
66 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
17641047 CCAAG
131 CCAAG
17641052 GACCAGCACC
Statistics
Matches: 3257, Mismatches: 443, Indels: 77
0.86 0.12 0.02
Matches are distributed among these distances:
892 1 0.00
893 305 0.09
894 70 0.02
895 75 0.02
896 3 0.00
897 106 0.03
898 223 0.07
899 6 0.00
900 239 0.07
901 576 0.18
902 506 0.16
903 223 0.07
904 149 0.05
905 775 0.24
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACTGGAACCCCAATGCCGCCGGT
CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
CCAAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTG
TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGTCGGCCAGAGGGGCGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGA
TCCTGCTACCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAACGAGCGGGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCACA
AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
Found at i:17639330 original size:26 final size:26
Alignment explanation
Indices: 17639291--17639343 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17639281 TCGGTCCAAT
*
17639291 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17639317 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17639343 C
1 C
17639344 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17640225 original size:26 final size:26
Alignment explanation
Indices: 17640189--17640241 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17640179 CTGGTCTGAT
*
17640189 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17640215 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17640241 C
1 C
17640242 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17641171 original size:145 final size:143
Alignment explanation
Indices: 17640910--17641174 Score: 390
Period size: 145 Copynumber: 1.8 Consensus size: 143
17640900 AGGGCCAAAT
*
17640910 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCTCGATCACTGGAACCCCAATGC
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCACTGGAACCCCAATGC
* *
17640975 CGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAA
66 CGCAGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCAA
17641040 CACATGCCCAAGG
131 CACATGCCCAAGG
* * *
17641053 ACCAGCACCCATCGTACATCCTGTGCGCACAACCCCCC-AGCCCCCCAGATC-GTCGGAACCCCA
1 ACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGA-CCCCCC-GATCACT-GGAACCCCA
* * * *
17641116 ATGCCGCAGGTTAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCTCGACAAAGAAAAAT
62 ATGCCGCAGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAAT
17641175 ACGACACCAG
Statistics
Matches: 108, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
143 29 0.27
144 13 0.12
145 66 0.61
ACGTcount: A:0.24, C:0.38, G:0.23, T:0.15
Consensus pattern (143 bp):
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCACTGGAACCCCAATGC
CGCAGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCAA
CACATGCCCAAGG
Found at i:17641271 original size:26 final size:26
Alignment explanation
Indices: 17641235--17641287 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17641225 CCAGTCTGAT
*
17641235 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATAAACTACGTATG
*
17641261 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTACGTATG
17641287 C
1 C
17641288 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTACGTATG
Found at i:17642178 original size:26 final size:26
Alignment explanation
Indices: 17642139--17642191 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17642129 CTGGTCCAAT
17642139 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17642165 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17642191 C
1 C
17642192 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17642902 original size:896 final size:893
Alignment explanation
Indices: 17641047--17644909 Score: 4764
Period size: 896 Copynumber: 4.4 Consensus size: 893
17641037 CAACACATGC
* * * * *
17641047 CCAAGGACCAGCACCCATCGTACATCCTGTGCGCACAACCCCCCAGCCCCCCAGATCG-TCGGAA
1 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-GATCGCT-GGAA
* * * *
17641111 CCCCAATGCCG-CAGGTTAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCTCGACAAAGAAAAAT
64 CCCC-ATGCCGTC-GGTTAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * ** * * *
17641175 ACGACACCAGCACTTGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGATCCAGTCTGATCTTAG
127 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* * *
17641240 ACTGGGAATGAACTACGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCGCGAA
192 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
17641305 ATGAGCGGGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGTCGGGGATC-AGTCGGGTC
257 ACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGA-TCGGGTC
** * * ** * *
17641369 CCCCTCTGTGTGCTGACGAACCTGCTACCGCAACCCTCAGTCTGGTTCAATCTTAGACTGGAAAT
321 CCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAAT
** * ** * *
17641434 TCACTCCGTATGCCTAAGCCAACCGACGAAATAAGTGAGCGAGTGGGCGGGCGAGCACTACGTCG
386 GAACTCTGTATGCCTAAGCCAACCGACG----AA---A-CGAACGGGCGGGCGGGCACTACGCCG
*** *
17641499 GCCAGAGAGACGGGATGCGCAAGTTATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
443 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
17641564 ATATTTCTAAATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTC
508 ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * **
17641629 ACGTGAAGTTTCATGGCAGGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGT
573 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
* * * *
17641694 TTGGGATTTTTTTAAATTTTTTCGGAAGAAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGT
638 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
17641759 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTGGTGACCAT
703 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
* *
17641824 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGACTACTGGCAGCAAACCTGTAAAATCTCAA
768 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
17641889 ATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGG
833 ATGCTCTTTAAGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
17641950 CCAAGTACCAGCACCCATCGCACATCATGTGTC-CACACCACCCCCGGCACCCCCCGATCGCTGG
1 CCAAGTACCAGCACCCATCGCACATCATGTG-CGCACACC-CCCCCGG--CCCCCCGATCGCTGG
* * ** *
17642014 AACCCCATGCGGTCGGTTAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCTAACAAAGAAAAAT
62 AACCCCATGCCGTCGGTTAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * *
17642079 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAG
127 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* *
17642144 ACTGGGAATGAACTCCGTATGCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGGA
192 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* *
17642209 ACGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCG-GTATGCACAAGCCGACGATCGATCGGGTC
257 ACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGAG-ATGCACAAGCCGAGGATCGATCGGGTC
* * * * * *
17642273 CCACTCTGCATGCTGCCGATCCTGCTGCTGTAATCCC-TGGTCTGGTCCGATCTTAGACTGGGAA
321 CCCCTCTGCATGCTGTCGATCCTGCTACCGCAA-CCCTTGGTCTGGTCCAATCTTAGACTGGGAA
* * * *
17642337 TGAA-TTTCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGTGGGTACTACACCGGCCAGA
385 TGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAGA
* * * *
17642401 GAGATGGGATGCACAAGCCGTGGATCAATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTT
449 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
17642466 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
514 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * *
17642531 AGTTTCATGGCGAGACCAGTCGTTTTCTATTTTTCACGATTTTCAAAATTTTTTACGGTTCGGGA
579 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGA
* * *
17642596 TTTTTTAAAATTTTTTTGGAAGGAGTTATGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTT
644 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * * *
17642661 TTTTGCAGGAACAAAAAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAA
709 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
17642726 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
774 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
17642791 TTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGG
839 TTTAA-GGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
17642847 CCAAGTACCAGCACCCATCGCACACCATGTGCACATACCCCCCTCGGCGCCCCCGATCACCGGAA
1 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGC-CCCCCGATCGCTGGAA
* * * *
17642912 CCCTAATGCCG-CCGTTCAGG---T-------T-CTCCGACGATGTTGCCCCGATGAAGAAAAAT
64 CCC-CATGCCGTCGGTT-AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * *
17642965 ACGGTACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAA--C-C-GT-C-G---G---TT--
127 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
17643016 -C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
192 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
17643069 ACGAGTGTGC-GGCGCTCAGCTGGCCAGAGAGGG-GAGATGCGCAAGCCGGGGATCGGTCGGGTC
257 ACGAGCGTGCAGGCGCTCAGCCGGCCAGAG-GGGCGAGATGCACAAGCCGAGGATCGATCGGGTC
* * * * *
17643132 CCCATCTGCATGCTGTCGATCCTGCTGCCGCAACCCTTGGTCCGATCCAATCTTAGACTGGGATT
321 CCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAAT
* * * * * * *
17643197 GAACTCTGTATGCCTAAGCCAACCG--G--GCGGACGAGCAGACGGGCACTACGTC-GACAGAGA
386 GAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAGAGA
17643257 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
451 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * * *
17643322 GCATGCCAATTCC------A-----TGTAAATTCATACAATGATCTCTTAAGCCTTCACGTGAAG
516 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
*
17643376 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATT
581 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATT
* * **
17643441 TTTTAAAATTTTTTCGAAAGGGGTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGTATTTTTGT
646 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
17643506 TGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
711 TGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
17643571 AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGT-AAATCTCAAATGCTCTT
776 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
17643635 TAACTGGGTGTGAGTTCTT-GAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGG
841 TAA-GGGGTGTGAGTT-TTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
17643689 CCAAGTACCAGCACCCATCACACATCATGTTCGTACACCCCTTCTGGCCCCCCGATCGCTGGAAC
1 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCCGATCGCTGGAAC
* * * * **
17643754 CCCATTGTCG-CTGGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATA
65 CCCA-TGCCGTC-GGTTAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATA
* * * * * * ** *
17643818 CAGCACCAACACATTCCCGAGCCTAGCATGTGCTGTCGCAACCCTTGGTCCGGTTTGATCTTCGA
128 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
17643883 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
193 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * ** *
17643948 CGAGCATGCAGGTGCTCAGCCGACCAGAGGGGC-AGGATGCGTAAGCCGAGGATCGGTCGGGTCC
258 CGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCACAAGCCGAGGATCGATCGGGTCC
* * * * * * * *
17644012 CCCTTTGCAAT-CTATCAATCCTACTACTGAAACCCTTGATCTGGTCTAATCTTAGA-TAGGGAA
322 CCCTCTGC-ATGCTGTCGATCCTGCTACCGCAACCCTTGGTCTGGTCCAATCTTAGACT-GGGAA
* * * *
17644075 TGAACTCTGTATGCCTAAGCCAACCGACGAGACGAGAGGACGGGCGGGCCGGCAGTACGCCAGCC
385 TGAACTCTGTATGCCTAAGCCAACCGACGAAAC--GA--ACGGGCGGGCGGGCACTACGCCGGCC
* *
17644140 AGAGAGACAGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
446 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
**
17644205 TTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
511 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * ** * *
17644270 TGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACCATTTTTGAAACATTTTACGGTTTG
576 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG
* *
17644335 AGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
641 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
17644400 TTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTG
706 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
* *
17644465 AAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAA-CTGTAAAATCCCAAATG
771 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
17644529 CTCTTTAAAGGGGTGTGA-TTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGG
836 CTCTTT-AAGGGGTGTGAGTTT-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
17644588 CCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCGCCCCGACCTCCCCGATCG-TCGGA
1 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCC-CCCCGATCGCT-GGA
* * *
17644652 ACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGA-GATGGTGCCCCGACGAAGAAAAA
63 ACCCC-ATGCCGTCGGTTAGGTTCTCCGGCGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAA
* * * * * * *
17644716 -A-GTGACACCAGCTCATGCTCGAACCTAGCATGTACTGCCGTAACCC-CTGCTCCGGTCCGATC
126 TACG-G-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GGTCCGGTCCGATC
* * * ** *
17644778 TTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAATTCAATATGCCCAAGTCAACCCA
188 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
17644843 CAAAATGAGCGTGCAGGCACTCAGTCGGCCAGAGGGGCGAGAAGCGCAAGCCGTGGATCGATAGG
253 CGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGATCGG
17644908 GT
318 GT
17644910 GGGAAGGTGG
Statistics
Matches: 2558, Mismatches: 302, Indels: 203
0.84 0.10 0.07
Matches are distributed among these distances:
840 1 0.00
841 25 0.01
842 104 0.04
843 265 0.10
844 1 0.00
848 1 0.00
851 1 0.00
852 63 0.02
854 81 0.03
855 17 0.01
856 2 0.00
857 2 0.00
858 4 0.00
859 114 0.04
860 57 0.02
861 3 0.00
862 4 0.00
864 2 0.00
865 1 0.00
867 1 0.00
868 1 0.00
870 1 0.00
871 1 0.00
873 1 0.00
874 2 0.00
876 4 0.00
877 2 0.00
878 57 0.02
879 114 0.04
880 3 0.00
881 1 0.00
882 2 0.00
883 2 0.00
884 1 0.00
885 1 0.00
886 63 0.02
887 17 0.01
888 79 0.03
894 2 0.00
895 1 0.00
896 411 0.16
897 95 0.04
898 7 0.00
899 359 0.14
900 222 0.09
901 5 0.00
903 35 0.01
904 295 0.12
905 18 0.01
906 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (893 bp):
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCTGGAACC
CCATGCCGTCGGTTAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGG
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGATCGGGTCCCCCT
CTGCATGCTGTCGATCCTGCTACCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACT
CTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA
AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
Found at i:17644828 original size:26 final size:26
Alignment explanation
Indices: 17644777--17644829 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17644767 CCGGTCCGAT
**
17644777 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCAATATG
* *
17644803 CTTAGACTGGGAATGAATTCAATATG
1 CTTAGACTAGGAATGAACTCAATATG
17644829 C
1 C
17644830 CCAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAATATG
Found at i:17647272 original size:26 final size:26
Alignment explanation
Indices: 17647243--17647293 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17647233 CGATCCAATC
17647243 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
* *
17647269 TTAGGCTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
17647294 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:17649943 original size:26 final size:26
Alignment explanation
Indices: 17649891--17649943 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17649881 CCGGTCTGAT
* *
17649891 CTTAGACTAGGATTGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCACATG
* *
17649917 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCACATG
17649943 C
1 C
17649944 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:17650810 original size:26 final size:26
Alignment explanation
Indices: 17650774--17650826 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17650764 CCGGTCCGAT
*
17650774 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17650800 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17650826 C
1 C
17650827 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17653763 original size:887 final size:875
Alignment explanation
Indices: 17644868--17654150 Score: 9865
Period size: 882 Copynumber: 10.5 Consensus size: 875
17644858 GGCACTCAGT
* * * * * *
17644868 CGGCCAGAGGGGCGAGAAGCGCAAGCCGTGGATCGATAGGGTGGGAAGGTGGGTTTAAGCACATC
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-GGTAGGTGGGTTTAGGCACATC
* *
17644933 ATCATATTTCTACGA-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGC
65 TTCATATTTCTAC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * * **
17644997 CTTCACGTGAAGTTTCTTCGCAAGACGGCTTGTTTTATATTTTTCACGAATTTAAAAACTTTTT-
129 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG-ATTTTGAAACTTTTTG
* * * *
17645061 ACGGCTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGACATGATC
193 A-GGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
17645126 CTTGTATTTTTATTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
257 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* ** * *
17645191 ACGATTTGAAAAAAGTGTTACCATTTCAGACACTTTAATGGCTACTGGCAACAAACCGGTAAAAT
322 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
17645256 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG-CAATATAAG
387 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
17645320 GGCCAAGTATCAGTACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAA
452 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGAAA
* * *
17645385 CCCCAATGCCGTCGATCAGGTTCTCCG-G-T-GATGGTGCCCCGGTGAAGAAAAATGTGGTACCA
516 CCCCAATGCCGTCGATCAGGTTCTCCGAGCTCGATGGTGCCCCGATGAAGAAAAATGCGGCACCA
* * ** ** * **** *
17645447 GCACATGCCCGAGCCCAGTATGTGCT-GT-CG--CA-ACCCTCGG--TCCGGTCCG-ATCTTAGA
581 GCATATGCCCGAACCC--TCGGT-CTGGTCCGATCATAGACTGGGAATGAACTCCGAAGCTTAGA
* * * *
17645504 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTTAGTCGGCCA
643 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCA
* * * * * ** *
17645569 GAGAGGCGGGATGCGTAAGTCGGGGATCAG-CTGGGTCCCCCTCTGCATGCTACCGATCCTGCTA
708 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
** * * *
17645633 CCATAA-CCTC-GATTGGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-A---A
772 CCGCAACCCTCGGTTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
** * *
17645692 T---CGACGAAACGATCGGGC-GGG--CGGGTACTACAC
837 TGAACGACGAAACGGGCGGGCGGGGCACGGGCACTACGC
*
17645725 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG-GGTAGGTGGGTTTATGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
17645789 TCATATTTCTACGTGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
17645854 TCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTT-AT
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTGA-
*
17645918 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
194 GGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
17645983 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
259 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
17646048 CATTTGAAAAAACTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
324 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
17646113 CAAATGCTCTTTAAGGGGG-CTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGG
389 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
17646177 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG-GACCA
454 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACC-
** * * * * * *
17646241 CCAATGCCACCGGTCAAGTTCTCCGGTGATGCTCCGACGATGGTACCCCGGTGAACAAAAATACG
518 CCAATGCCGTCGATCAGGTTCTCC---GA-GCT----CGATGGTGCCCCGATGAAGAAAAATGCG
* * * ** * ****
17646306 GCACCAGC-TCATGCCCGAGCCCAGCATGTGCT-G-CC-AT-A-ACCCTCGG--TCCGGTCC-AA
575 GCACCAGCAT-ATGCCCGAACCC-TC-GGT-CTGGTCCGATCATAGACTGGGAATGAACTCCGAA
* * * *
17646362 TCTTAGACTGGGAATGAACTCCGGATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAG
636 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * *
17646427 TCGGCCAGAGGGAAGGGATACGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTATCAATC
701 CCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATC
** * *** *
17646492 CTGCTGTTGCAACCCTAGG-TTCGGTCCGATCTTAGACTAATAATGAACTCCGTTTGCCTAAGCC
766 CTGCTGCCGCAACCCTCGGTTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
*
17646556 AACCGATGAA--ACG-AGCGGGCGGGCAGACGGG--CGGGCACTACGC
831 AACCGATGAACGACGAAACGGGCGGGC-G--GGGCACGGGCACTACGC
* * * *
17646599 CGGCTAGAGAGAGGGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGAACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
17646664 TCATATTTCTACGA-GCCAATGCCATTTTTTTGGCTTGTAAA-TCATACAATGCTCCGTTAAGCC
66 TCATATTTCTAC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
17646727 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAACTTTTTG
130 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT--GAAACTTTTTG
* * * * * * *
17646792 CGGTTGGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCGAAACTTGGTAGATGCGATCC
193 AGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
17646857 TTGTATTTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTG
258 TTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
17646922 ACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAAT
322 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* ** *
17646987 CTGAAATGCAATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAG
387 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
17647052 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCATCGGA
452 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGG-CCCCCCGATCGTCGAA
* * * * *
17647117 ACCCCAATGCTGTCGGTCAGGTTCTCTGGGGATGCTCCAACGATGGTGCCCTGACGAAGAAAAAT
515 ACCCCAATGCCGTCGATCAGGTTCTC---CGA-GCT----CGATGGTGCCCCGATGAAGAAAAAT
** * * *
17647182 TTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTTGGTCCGATCCAATCTTAG
572 GCGGCACCAGCATATGCCCGAACCC-TC--G-G----T------C-TGGTCCGAT-C-A---TAG
* *
17647247 ACTGGGAATGAACTCC-ATATGTTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
617 ACTGGGAATGAACTCCGA-A-GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * *
17647311 AATGAGCGTGCAGGCGCTCAGCC-AGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCAGCCGAGT
680 AACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * *
17647375 CCCCCTCTGCGTCCTGTCGATCTTGCTGCTGCAACCCAT-GG-TTCGGTCCGATCTTAGACTGGG
744 CCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCC-TCGGTTTCGGTCCGATCTTAGACTGGG
* * *
17647438 AATGAACTCCGTATGCCTAAGGCAGCCGATGAA--ACG-AACGGGC-GGTGGGGCA--GGCACTA
808 AATGAACTCCGTATGCCTAAGCCAACCGATGAACGACGAAACGGGCGGGCGGGGCACGGGCACTA
*
17647497 TGC
873 CGC
* * * ** *
17647500 CGGCCAAAGAGACGGGATGCGCAAGTCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGTGCATAT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
17647565 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCT
66 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
*
17647630 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTG
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTGAG
* * *
17647695 GTTTGGGATTTTTTAAAATTTTTT-GGAAGGACTTTTGGACCCAAACTTGGTGGACGTGATCCTT
195 GTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
**
17647759 GTATTTTTACTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
260 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* **
17647824 ATTTGAAAAAAGTGTCCCCTTTTTGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
325 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * **
17647889 AAATGCTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGAACAATATAAGGGC
390 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
17647954 CAAGTACCAGCACCCATTGCACATCATGTGCACACACCCCCCTGGCCCCCCGATCGTC-AGAACC
455 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGTCGA-AACC
* * * *
17648018 CCAATGTCG-CCAGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCACCGACGAAGAAAAATGC
518 CCAATGCCGTCGA-TCAGGTTC-TC--CGA-GCT----CGATGGTGCCCCGATGAAGAAAAATGC
* * * * * * * ** * * *
17648082 GACACCAGCACATGCCCGAGCCC-AGCATGTGCTACCG--CA-ACCCT--CAGTCCAA-TCCG-A
574 GGCACCAGCATATGCCCGAACCCTCG-GTCTGGT-CCGATCATAGACTGGGAAT-GAACTCCGAA
* * * *
17648139 TCTTAGACTAGGAATGAACTCCGTATGTTTGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGC
636 GCTTAGACTGGGAATGAACTCCGTA----TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * *
17648204 TCAGCC-AGCCAGAGGGGCGGGATGCACAAGCCGGGAATCGATCGGGTCCCCCTTTGCGTCCTGT
697 TCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGT
* * * **
17648268 CGATCCTGCTGCCGCAACCCTCGATCT-GGTCTGATCTTAGACTATGAATGAACTCCGTATGCCT
761 CGATCCTGCTGCCGCAACCCTCGGTTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *** *** ***
17648332 AAGCCAACCGACGAA--AAG-TGTGGGCGTATGGGTGGGTGGGCACTACGC
826 AAGCCAACCGATGAACGACGAAACGGGCGGGCGGG-GCACGGGCACTACGC
* * * * * *
17648380 TGGCCAAAGAGAGGGGATGCACAAGCCGTGGATCGATAGGGTGGAAGGTGGGTTTAGGCCCATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
17648445 TCATATTTCTGCATGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
17648510 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCATGATTTTCGAAACTTTTTGCA
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTG-A
* * * * ** *
17648575 -GTTCGGGATTTTTTAAAATATTTTCAGAAGGAGTTCTGGCATCAAACTTGGTAGACATGATCCT
194 GGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
17648639 TGTATTTTTGTTAGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGAC
259 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
17648704 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCT
324 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * * ** *
17648769 AAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGATTGATGAGGGAAAGGGGGAAAATATTAGGG
389 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
17648834 CCAAGTACCTGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCAAAACCC
454 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCC
* * * *
17648899 CAATGCCGTCGGTCAAGTTCTCCAACGATGCTCTAGCGATGGTGCCCCGGTGAAGAAAAATGTGG
519 CAATGCCGTCGATCAGGTTCT-C--CGA-G--CT--CGATGGTGCCCCGATGAAGAAAAATGCGG
* * * * * * * * ** * *** * *
17648964 CACCAGTACATGCCCGAGCCC-AGCATATGCTGCCG--C-CACCCTCGGTCCG-GC-CCG-ATCT
576 CACCAGCATATGCCCGAACCCTCG-GTCTGGT-CCGATCATAGACTGGGAATGAACTCCGAAGCT
* * * *
17649022 TAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGTGCTCAGCCG
639 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * ** * * *
17649087 ACCGGAGGGGCGAGATGCGCAAGTCGAGGATCGGTCAAGTCCCCTTGTACGTGCTGTCGATCCTG
704 ACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
* * * *
17649152 CTGTCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
769 CTGCCGCAACCCTCGGTTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
17649216 CGACGAA--ACG-AGCGGGCGGGC--GG-ACGGGCACTACGT
834 CGATGAACGACGAAACGGGCGGGCGGGGCACGGGCACTACGC
* * *
17649252 CGGCCAGAGAGACGGGATTCGCAAGCCCTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
17649317 TCATATTTCTGCATGCCAATGCCA-TTTTAGAGGCTTGTAAATTCATGCAATGCTCCCTTAAGCC
66 TCATATTTCTACATGCCAATGCCATTTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
17649381 TTCACGTGAAGTTTCATGGCAAG-CAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGC
130 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTGA
* * *
17649445 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-TATGGTAAACGTGATCC
194 GGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCC
*** * * *
17649509 TTGTATTTTTGTTGTTGTGCACAAAACAATTCAGCTAAAAACTCCAAGTGTACGAGATTTTGTGA
258 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
17649574 CCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
323 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
17649639 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGG
388 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
17649704 GCCAAGTACCAGCACCTATCTCACATCAAGTGTGCACACCCCCCGGCCCCCTCGATCGTCGGAAC
453 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGAAAC
* *
17649769 CCCAATGCCGTCGGTCAGGTTCTCCTATGATGCTCCGGCGATGTTGCCCC-AGTGAAGAAAAATG
517 CCCAATGCCGTCGATCAGGTTCTCC---GA-GCT----CGATGGTGCCCCGA-TGAAGAAAAAT-
* * * * * *
17649833 CAGCACTAGCACATGCTTGAGCCCAGCATGTGCTGCCCAACCCCCGGTCCGGTCTGATCTTAGAC
572 --G--C--G-----GC---A--CCAGCATATGC--CCGAACCCTCGGTCTGGTCCGATCATAGAC
* * * *
17649898 TAGGATTGAACTCCGCATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA-CC-C---A-
619 TGGGAATGAACTCCG-AAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* **
17649957 -A-----CGGGCGCTTAGCCGACCAGAGGGATGGGATGCGCAAGCCAGGGG-TCGGTCGGGTCCC
683 GAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGGTCGGGTCCC
* * * * * ** *
17650015 CCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCGGTCT-GGTCCAATCTTAGACAAGGAATC
747 CCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTTCGGTCCGATCTTAGACTGGGAATG
* * ** *
17650079 AACTTCGTATGCCTAAGCCAACCGACGAAACGA-GAGGCGGGTGGGC--GGC-CGGGCACTACGC
812 AACTCCGTATGCCTAAGCCAACCGATG-AACGACGAAACGGGCGGGCGGGGCACGGGCACTACGC
* * ** * *
17650140 CTGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAAGTGGTAGGTGGGTTCAGGCATATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
17650205 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
17650270 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTGGAAACTTTTT-AC
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTGA-
17650334 GGTTTGGGATTTTCTT-AAATTTTTTCGGAAGGAGTTTTGG-------CTTGGTAGACGTGATCC
194 GGTTTGGGATTTT-TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
17650391 TTGTATTTTTCTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGA
258 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
17650456 CCATTTAAAAAAAATGTCCCCGTTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATC
323 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
17650521 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
388 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* ** * * * * *
17650586 GCCAAATATAAGGCACCCATCGCACATCTTGTGCGCACACCCCCCGGCCACCTGACCGTCGGAAC
453 GCCAAGTACCA-GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAAC
* * * *
17650651 CCCAATGTCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
517 CCCAATGCCGTCGATCAGGTTCTCC---GA-GCT----CGATGGTGCCCCGATGAAGAAAAAT--
* * *
17650716 GACATTAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
572 G-C----G-----G--C-A--CCAGCATATGC--CCG-AACCCTCGGTCTGGTCCGATCATAGAC
* * *
17650781 TGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
619 TGGGAATGAACTCCG-AAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
17650846 GACCGTGCGAGCGCTCAGCCGACCAGAGGGGCGAGATGC-TAGGCCGTGGTTCGGTCGGGTCCCC
683 GAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* * * * **
17650910 CTCTACGTGCTGTCGATCCTGCTACCGCAATCCTCGGTCT-GGTTTGATCTTAGACTGGGAATGA
748 CTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTTCGGTCCGATCTTAGACTGGGAATGA
* * * * *
17650974 ACTCCGTATGCCTAAGCCAACCGACGAA--ACG-AGCGGGCGTGCGGGCGGACGGGCACTATGC
813 ACTCCGTATGCCTAAGCCAACCGATGAACGACGAAACGGGCGGGCGGG-GCACGGGCACTACGC
* * *
17651035 CGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACAACT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
17651100 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
17651165 TCACGTCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACTATTTTTGAAACTTTTTGCG
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTGAG
* * * * *
17651230 GTTCGAGATTTTTTTAAATATTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
195 GTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
17651295 GTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACC
260 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
17651360 ATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
325 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * * *
17651425 AAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTGGATTAGGAAAAGGGGGCCAATATAAGGGC
390 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
17651490 CAAGTACCAGCACCCATTGCTCATCATGTGCGCACACCCCCCGGCCCCCCCGATCG-CTGGAACC
455 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTC-GAAACC
* ** *
17651554 CTAATTTCGTC-AGTCAGGTTCTCCGA---CGATGGTGCCCCGATGAAGAAAAATACGGCACCAG
518 CCAATGCCGTCGA-TCAGGTTCTCCGAGCTCGATGGTGCCCCGATGAAGAAAAAT---G---CGG
* * * * *
17651615 CACATGCTGGAGCCCATCATGTGTTACCGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAAAG
576 CAC---C---AG--CAT-A--TG--CCCG-AACCCTCGGTCTGGTCCGATCATAGACTGGGAATG
* * * * * * * *
17651680 AACTCTGTATGCTTAGATTGAGATTGCACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGT
627 AACTCCG-AAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * * * * *
17651745 GGGCACTCATCC-AGCCAGAGGGGCGAGATACGTAAGTCGGGGATC-ATCCAGGTCCCCCTCTGT
691 GGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT-CGGGTCCCCCTCTGC
** * * * * * * *
17651808 GTGCTACCGATCCTACTGTCACAACCTTCAG--TCTGTCCGATCTTAGACTAGGAATGAACTCCG
754 GTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTTCGGTCCGATCTTAGACTGGGAATGAACTCCG
* *
17651871 TATGCCTAAGCCAA-C------CGACGAAACGAGCGTGC-GGGCA--GGCACTACGC
819 TATGCCTAAGCCAACCGATGAACGACGAAACGGGCGGGCGGGGCACGGGCACTACGC
* * *
17651918 CGGCTAAAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* **
17651983 TCTTATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
17652048 TCACGTGAAATTCCATGGCAAGACGACTCATTCTCTATTTTTCACGATTTTTGAAAACTTTTT-A
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTG-AAACTTTTTGA
* * * * * *
17652112 CGGTTAGGGATTTTTTCAAATTTTTTTGAAAAGAAGTTTCGGCCCCAAACTTGGTAGACGTGATC
194 -GGTTTGGGATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
17652177 CTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGCTTTTGTG
257 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
17652242 ACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
322 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
17652307 TTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAG
387 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
17652372 GGCCAAGTACCAGCACCCATTGCATATCACGTGCGCACACCCCCCCGGTCCCCCCGATCGTCGGA
452 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGAA
** * *
17652437 ACCAAAATGCCATCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGATGAAGAAATAT
515 ACCCCAATGCCGTCGATCAGGTTCTCC---GA-GCT----CGATGGTGCCCCGATGAAGAAAAAT
* * * * * ** * * ** *
17652502 ACGGCACCAGTACATGCCCGAGCCCAGCATGAG-CT-GT-CG--CA-ACCCT--CAGTCCAGTCC
572 GCGGCACCAGCATATGCCCGAACCC-TC--G-GTCTGGTCCGATCATAGACTGGGAATGAACTCC
* * * * *
17652559 G-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACAAAACGAGCGTGCGTGCACT
633 GAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * ** *
17652623 CAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCAGCCGAATCCCCCTCTGCGTGCTGCCG
698 CAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCG
* * * * * * *
17652688 ATCTTGCTGACACAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAA
763 ATCCTGCTGCCGCAACCCTCGGTTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** *
17652752 GCCAACCGATAAAATGAGCGGAA-GGGCGGGCGGGAGGGCGGGCACTACGT
828 GCCAACCGAT-GAACGA-CGAAACGGGCGGGCGGG-GCACGGGCACTACGC
* *
17652802 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGCCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
17652867 TGATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCT
66 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
*
17652932 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTGAAAACTTTTTGAG
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTG-AAACTTTTTGAG
* * * * *
17652997 GTTTAGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTT
195 GTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
** *
17653062 GTATTTTTGTTGGCATGCACAAAAACTTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
260 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * ** *
17653127 ATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTATTGGTGGCAAAACTGTAAAATCTC
325 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * *
17653192 AAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGCTTTGATGAGGTATAGGGGGACAATATAAGGGC
390 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * * *
17653257 CGAGCACCAGCACCCATCACACATCATGTGCGCACACCACCCCGGCCCCCTGATCATCGAAACCT
455 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCGATCGTCGAAACCC
* *
17653322 CAATGTCGTCGATCAGGTTCTCCG-G-T-GATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCA
519 CAATGCCGTCGATCAGGTTCTCCGAGCTCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCA
* * *
17653384 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCATAGATTGGGAATGAACTTCGTAAGCTTAGA-T
584 TATGC--CCG-AACCCTCGGTCTGGTCCGATCATAGACTGGGAATGAACTCCG-AAGCTTAGACT
* * * * * *
17653448 TGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGGGTGCAGGTGCTCAGCTGACCAGA
645 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGA
* * * *
17653513 GGGGTGGGATGCGCAAGCTC-GGGATCGGTTGGGTCCCCCTTTGCGTGCTGTCGATCCTGTTGCC
710 GGGGCGGGATGCGCAAGC-CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
* ** * *
17653577 GTAACTTTCGGTTTCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGATG
774 GCAACCCTCGGTTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
17653642 AAACGAGCGAACAGGCGGGCGGGCGGGCGGCAGGGCGGGCACTACGC
839 -AACGA-CGAA-A--CGGGCGGGC-GG-GGCA---CGGGCACTACGC
* * * *
17653689 CTGTCAGAGAGAAGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
17653754 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * *
17653819 TCACGTGAAGTTTCATGTCATGGCGACTCGTTTTCTATTTTTCATGATTTTTGAAACTATTT-AC
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTGA-
* *
17653883 GGTTCGTGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
194 GGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
17653948 CGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
259 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
17654013 CATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTATTGGCAGTAAACCTGTAAAATCT
324 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
17654078 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGCGGGCCAATATAAGGG
389 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
17654143 GCAA-TACC
454 CCAAGTACC
17654151 GCAACCCTCG
Statistics
Matches: 7199, Mismatches: 938, Indels: 549
0.83 0.11 0.06
Matches are distributed among these distances:
853 3 0.00
854 65 0.01
855 387 0.05
857 38 0.01
859 1 0.00
860 1 0.00
865 187 0.03
866 43 0.01
867 2 0.00
869 2 0.00
870 51 0.01
871 443 0.06
872 271 0.04
873 16 0.00
874 124 0.02
875 140 0.02
876 457 0.06
877 100 0.01
878 120 0.02
879 155 0.02
880 355 0.05
881 300 0.04
882 549 0.08
883 342 0.05
884 213 0.03
885 373 0.05
886 58 0.01
887 433 0.06
888 164 0.02
889 84 0.01
890 11 0.00
891 205 0.03
892 49 0.01
893 14 0.00
894 105 0.01
895 248 0.03
896 6 0.00
897 59 0.01
898 87 0.01
899 220 0.03
900 37 0.01
901 178 0.02
902 309 0.04
903 10 0.00
904 3 0.00
905 180 0.03
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAACTTTTTGAGG
TTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCA
ATGCCGTCGATCAGGTTCTCCGAGCTCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCATA
TGCCCGAACCCTCGGTCTGGTCCGATCATAGACTGGGAATGAACTCCGAAGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCG
GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCC
TCGGTTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAACGACG
AAACGGGCGGGCGGGGCACGGGCACTACGC
Found at i:17654209 original size:26 final size:26
Alignment explanation
Indices: 17654173--17654225 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17654163 CTGGTCTGAT
*
17654173 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
17654199 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
17654225 C
1 C
17654226 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:17656478 original size:891 final size:891
Alignment explanation
Indices: 17654149--17659547 Score: 5600
Period size: 903 Copynumber: 6.1 Consensus size: 891
17654139 AGGGGCAATA
* * * *
17654149 CCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* ** * *
17654214 AACCCCGTATGCCTAAGTCAACTTAC-AGAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCG
66 AACTCCGTATGCCTAAGTCAACCCACGA-AACAAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCG
* * * * **
17654278 GGATACGCAAGCCGAGGATCGATCGCATCCCCCTCTGCATGTTGCTGATCCTACTGCTGCAACCC
130 AGATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCA---TGCTG-----ACTGCT-CAACCC
* * * *
17654343 TCGGTCTCGTCCAATCTTAGACTGGGAATGAACTCTGTAAGCCTAAGCCAACTGACGAAACGAAC
186 TCGGTCTAGTCCAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-
* * * * *
17654408 GGACGGGCGGGCGGGCGGGCAGACGGGCACTATGCCGACTAGAGAGACGGGATGCGCAAGCCGTG
248 -G-CGGGCGGACGGGC-AG-A-AC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
17654473 GATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAACGCCATTTTTA
307 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
17654538 TGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
372 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
17654603 TTTTCTATTTTTCACAATTTTTGAAACCTTTTGCGGTTTGAGATATTTTAAAATTTTTTAGGAAG
437 TTTTTTATTTTTCACAATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAG
** * *** *
17654668 GACATTAGGCCCCAAACTTGGTAGGTATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
502 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTA
* * *
17654733 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACTC
567 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
17654798 TTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCA
632 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* * * *
17654863 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATTGCATATCAAGTG
697 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTG
* * *
17654928 CGCACACCCCTCCGG-CCCCCTGATCGTCGGAACCCCAATGCCATCGGTTAGGTTCTCCG-ATGA
762 CGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCAT--
* * *
17654991 TGCTCTGGCGATGGTGCCTCGGCGAAGAAAAAT-GCGGCACCAGCACATGCTCGAGCCCAGCATG
825 TGCTC--GCGATGGTGCCCCGACGAAGAAAAATAG-GGCACCAGCACATGCCCGAGCCCAGCATG
*
17655055 TGCTA
887 TGCTG
* * * * * *
17655060 CTGCAACCCTCGGTTCGGTTCGATCTTAGACTGGGAATTAACTCCGTACGCTTAGACTGGGAATG
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* ** * * * * *
17655125 AACTCCATATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCCCAGCTAGCCAGAGGGGCGA
66 AACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGA
** * * * * * *
17655190 GATGCATAAGGTGGGGATCGATCGGGTCCCCTTCTGCGTGCTACCGATCTTGTTGCCACAACCCT
131 GATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCATGCT---GA-C----TG-CTCAACCCT
* ** * * * **
17655255 CGATCTAGTCTGATGTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAATG
187 CGGTCTAGTCCAATCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * *
17655320 GGC-GAGCGAGCCG-GCGGCCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
251 GGCGGA-CGGGCAGAACGG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * * *
17655383 AGGGTGGTAGGTGAGTTTAGGTACATCTTCATATTTCTGCGTGTCGATGCCATTTTTATGGCTTG
314 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
17655448 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATTGCAAGACGACTCGTTTTCTT
379 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT-TT
* * * * * *
17655513 -TTTTTCACAATTTTTGAAACTTTTTGTGGTTCGGGATTTTTCAAAATTTTTTCGAAAGGGGTTT
443 ATTTTTCACAATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
17655577 TGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTTAGCTGA
508 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAA
* * * *
17655641 AAACACGAAGTGTACGAGATTTTGTAACCATTTG-AAAAAGTGTCCCCATTTCATACACTTTAAT
573 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
17655705 GGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTACTCAAGGTTT
638 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* * *
17655770 GATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGTGCCCA
703 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCACA
17655835 CCCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCATTGCTCC
768 -CCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GCATTGCT-C
17655900 GACGATGGTGCCCCGACGAAGAAAAATAGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
830 G-CGATGGTGCCCCGACGAAGAAAAATAGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
17655963 CCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATACTTAGACTGGGAATG
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
17656028 AACTCCGTTTGCCTAAGTAAACCCACGAAACAAGCGTGCCGGCGCTCAGCTGGCCAGAGGGGCGA
66 AACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGA
* * * *
17656093 GATGCGCAAGCTG-GTGATCGACCGGGTCCCCCTCTCCATGCTG-CTG-T-AACCCTTGGTTTGG
131 GATGCGCAAGCTGAG-GATCGACCGGGTCCCCCTCTGCATGCTGACTGCTCAACCCTCGGTCTAG
*
17656154 TCCAATCTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACG
195 TCCAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACG
* * * * *
17656219 GGCAGAATGGCACTACGCCGGCCAAAGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGATAG
259 GGCAGAACGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* **
17656284 GTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGATATTTTTATGGCTTGTAAATTCATA
324 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
17656349 CAATGGTCCTTTAAACCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCACGA
389 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAA
* *
17656414 TTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
454 TTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
17656479 CTGGTAGACGTGATCCCTT-TATTTTTGTTGGCATACATAAATAAATTAAGCTAAAAACTCGAAG
519 TTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAG
* *
17656543 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGA
583 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
17656608 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGAT
648 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* * * *
17656673 AGGGGGCCAATATAAGGGCCAAGTCCTAGCACCCATCGCACATCATGAGCGCACACCCACCCGGC
713 AGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGC
* *
17656738 CCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCT-C-C---G---GCGATGGTGCCCC
778 CCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCATTGCTCGCGATGGTGCCCC
*
17656795 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
843 GACGAAGAAAAATAGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
17656844 CAGCAACCCTCGGTTCC-AGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGGCTGGGAA
1 CCGCAACCCTCGG-TCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
*
17656908 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGCTGGCCAGAGCGGC
64 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGC
* *
17656973 -AGGATGCGAAAGCTGAGGATCGACCGGGTCCCCCTCTGCGTGCTGTCAATCTTGCTACCACAAC
129 GA-GATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCATGCTG---A-C-TGCT----CAAC
* * * *
17657037 CCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA
184 CCTCGGTCTAGTCCAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
17657102 GC--G-AG-CGGGC-G---GGCACTACGTCGGCCAGAGAGATGGGA----C-A-TC-T---TC-A
248 GCGGGCGGACGGGCAGAACGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
** ** * * * * ** * ***
17657148 TA---T--T-TCTGCATGCTA---ACA-C--CATTTTTATGGCTTGTAAAT-TCA-TAGAATGGT
313 TAGGGTGGTAGGTGGGT-TTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGG-
* * * * * * * *
17657199 CCCT-T-AA-GC---C--T--TCACGTGAAG-TTTCA--TG--G---CA-AG-ACGAC-TCGT--
375 -CTTGTAAATTCATACAATGGTC-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-TCG
** * * ** ** * ** * * * **
17657241 TTTCTATT-TTTCAC-GATTTTTGAAACTTTTTTCG-GTTCGAGA-TTTTTTAAAATTTTTTAGG
437 TTT-T-TTATTTTTCACAATTTTTGAAACTTTTT-GCGGT-TTGAGATTTTTTAAAATTTTTTCG
* * *** * ** *
17657302 AAGGACTTTTG-GCCCCAAACTTGGTAGGTGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAA
498 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
17657366 ATTCAGCTAAAAACTTC-AAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTA
563 ATTAAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
17657430 GACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTCAAGGGGGTGTGAGT
627 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* ** * * * *
17657495 TCTCGAGGTTTGATGACAGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACACC
692 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATC
** *
17657560 ATGTGCGCACACCCCTCCAAGCCCCCC-GATCGTCGGAACCCTAATGCCGTCGGGT-AGGTTCTC
757 ATGTGCGCACACCCC-CCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTC
* * * *
17657623 CG-ATGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGTACCAGCACATGCCCAAGCCC
820 CGCAT--TGCT-CG-CGATGGTGCCCCGACGAAGAAAAATAGGGCACCAGCACATGCCCGAGCCC
17657687 AGCATGTGCTG
881 AGCATGTGCTG
* * * *
17657698 CCACAA---AC-GT-CG----G-TC-----C---G---G---TCCG-AT-CTTACATTGGGAATG
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * * * *
17657737 AACTCCGTATGCCTAAGTGAACCCACGAAACGACCGTACGGGCACTCAGCCGGCCAGAGGGGCGG
66 AACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGA
* * *
17657802 GATGCGTAAGCTGAGGATCGACCGGGTCCCCCTCTGTATGCTCCCGATCCGGCTACCGTAACCCT
131 GATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCATGCT---GA--CTGCT--C--AACCCT
* * * * *
17657867 CGATCT-GATCCAATCTTAGACTGGCAATGAACTTCGTATGCATAAGCCAACCGACGAAATGAGT
187 CGGTCTAG-TCCAATCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
** * *** * * * *
17657931 GGGCAGG-CGGGC-GGGCGGGCATTACGTTTGCTAGAGAGACGAGATGCGCAAGCCGTGTATCAA
250 GGGC-GGACGGGCAGAAC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
17657994 TAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
313 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* *
17658059 GTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
378 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTT
* * ** * *
17658124 ATTTTTCATAATTTTTGAAACTTTCTATGG-TTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTT
443 ATTTTTCACAATTTTTGAAACTTTTTGCGGTTTGA-GATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * * *
17658188 TTGGACCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCGCAAAAAAATTCAGCTA
507 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTA
* *
17658253 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTCAGACACTTTAA
572 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
17658318 TGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
637 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* * * * *
17658383 TGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCAA
702 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCAC
* * ** *
17658448 ACCCCCCAGGCCCCCC-GATCGTCGGAACCCCAATTCCACCGGTCAGGTTCCCCGACGA-TGCTT
767 ACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-C-ATTGC-T
* * * *
17658511 CGGCGATGGTGCCCCGACGATGAAAAATACGGCACCAGCACGTGCCCGAGCCCAGCATGTGCTA
829 C-GCGATGGTGCCCCGACGAAGAAAAATAGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
17658575 TCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATC
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * ** * * * *
17658640 AACTCCTTATGCCTAAGTGAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGG
66 AACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGA
* * * * *
17658705 GATGCGTAAGC-CAGGGATCAGA-CGGGTCCCTCTCTGCGTGTTGTCGATCCTGCTACTGCAACC
131 GATGCGCAAGCTGA-GGATC-GACCGGGTCCCCCTCTGCATG--CT-GA--CTG---CT-CAACC
* * * * *
17658768 CTCGGTC-CGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAATGA
185 CTCGGTCTAG-TCCAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * * * * *
17658832 GCGAGCGGGCGGGC-GAGCGGGCACTATGCCAGCCAGAGAGACAGGATGTGCTAGCCATGGATTG
248 GCGGGCGGACGGGCAGAAC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * **
17658896 ATAGGGTGGTAGGTAGGTTTAGGCATATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCT
312 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * ** * * * * *
17658961 TTTAAATTCATGCAATATTCCCTTAAGCCTTCACGTTAAGTTTCATGACAAGACAAATCGTTTTC
377 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTT
** ** * * * *
17659026 TATTTTTCATGATTTTCAAAACTTTTTGCTGTTCGGGATTTGTTAAAATTTTTTCGGAAGGAGTT
442 TATTTTTCACAATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
17659091 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTA
507 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTA
* *
17659156 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAA
572 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * **
17659221 TGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGATCTTGAGGTT
637 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* * *
17659286 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCAC
702 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCAC
* * *
17659351 ACCCCCCCCGCCCCCC-GATCGTCGGAACCTCAATGCCGTCGGTTAGGTTCTCCGACGA-TGCTA
767 ACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-C-ATTGCT-
* * * * *
17659414 CGACGTTGGTGCCCTGGCGAAGAAAAAT-GTGGCACCAGCACATACCCGAGCCCAGCATGTGCTA
829 CG-CGATGGTGCCCCGACGAAGAAAAATAG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
17659478 CCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
17659543 AACTC
66 AACTC
17659548 TGACGATCGG
Statistics
Matches: 3775, Mismatches: 523, Indels: 388
0.81 0.11 0.08
Matches are distributed among these distances:
825 1 0.00
826 3 0.00
827 168 0.04
828 3 0.00
829 4 0.00
830 1 0.00
831 7 0.00
832 1 0.00
835 22 0.01
838 1 0.00
839 1 0.00
840 1 0.00
841 1 0.00
842 5 0.00
843 263 0.07
844 49 0.01
845 10 0.00
846 10 0.00
847 1 0.00
848 3 0.00
849 3 0.00
850 1 0.00
851 5 0.00
852 3 0.00
853 3 0.00
854 65 0.02
855 7 0.00
856 13 0.00
857 11 0.00
858 7 0.00
859 2 0.00
862 2 0.00
863 7 0.00
864 10 0.00
865 13 0.00
866 7 0.00
867 3 0.00
868 2 0.00
869 3 0.00
870 4 0.00
872 1 0.00
873 2 0.00
874 1 0.00
875 10 0.00
876 11 0.00
877 137 0.04
878 245 0.06
879 1 0.00
880 3 0.00
881 77 0.02
882 146 0.04
883 1 0.00
886 25 0.01
887 3 0.00
888 2 0.00
889 3 0.00
890 7 0.00
891 303 0.08
892 117 0.03
893 146 0.04
894 64 0.02
895 1 0.00
898 2 0.00
900 1 0.00
901 148 0.04
902 79 0.02
903 1283 0.34
904 9 0.00
905 4 0.00
906 5 0.00
907 9 0.00
908 4 0.00
910 2 0.00
911 195 0.05
912 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGA
GATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCATGCTGACTGCTCAACCCTCGGTCTAGT
CCAATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGG
CAGAACGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATT
TTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCC
CCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCATTGCTCGCGATGGTGCCCCGAC
GAAGAAAAATAGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
Found at i:17656905 original size:26 final size:26
Alignment explanation
Indices: 17656869--17656921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17656859 CCAGTCCGAT
*
17656869 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17656895 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17656921 C
1 C
17656922 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17658650 original size:26 final size:26
Alignment explanation
Indices: 17658599--17658651 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17658589 CCGGTCCGAT
* *
17658599 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
17658625 CTTAGACTGGGAATCAACTCCTTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17658651 C
1 C
17658652 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:17661075 original size:12 final size:12
Alignment explanation
Indices: 17661058--17661082 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17661048 ACCGACGAAA
17661058 CGAGCGGGCGGG
1 CGAGCGGGCGGG
17661070 CGAGCGGGCGGG
1 CGAGCGGGCGGG
17661082 C
1 C
17661083 ACTACGTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.64, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGG
Found at i:17663406 original size:159 final size:158
Alignment explanation
Indices: 17663187--17663537 Score: 501
Period size: 159 Copynumber: 2.2 Consensus size: 158
17663177 CGCCGGTCGG
* *** *
17663187 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTACGGCAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGACAGCAAGAT
17663252 CG-CAGC-ACGCAGAGGGGGAACCCGATCGATCCCCGCTTGCGCATCCCCGCCCCTCTGGCCGGC
66 CGACAGCAACGCAGAGGGGG-ACCCGATCGATCCCCGCTTGCGCAT-CCCGCCCCTCTGGCCGGC
* * *
17663315 TGAGCACCCGCACGCTTATTTTGTGGGTTGA
129 TGAGCACCCGCACGCTCATTTCGT-GGCTGA
* *
17663346 CTTAGGCATACGGAGGTTCATTCCCGGTCTAAGATCGGA-CGAACCAAGGGTTACGACAGCAGGA
1 CTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGACAGCAAGA
** * *
17663410 TCGACAGCAACGCAGAGGGGGACCCGATCGATCCTGGCTTGCGCATCCCGCCCCTTTGGTCGGCT
65 TCGACAGCAACGCAGAGGGGGACCCGATCGATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
17663475 GAGCGCCCGCACGCTCATTTCGTGGCTGA
130 GAGCACCCGCACGCTCATTTCGTGGCTGA
*
17663504 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
17663538 ACGAAGTTCA
Statistics
Matches: 172, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
157 19 0.11
158 18 0.10
159 73 0.42
160 50 0.29
161 12 0.07
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.21
Consensus pattern (158 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGACAGCAAGAT
CGACAGCAACGCAGAGGGGGACCCGATCGATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCACCCGCACGCTCATTTCGTGGCTGA
Found at i:17664448 original size:26 final size:28
Alignment explanation
Indices: 17664403--17664458 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
17664393 GGTTGACTAG
*
17664403 GCATACAGAGGTTTATTCCCAG-TCTAA
1 GCATACAGAGGTTCATTCCCAGTTCTAA
*
17664430 GCATACGGA-GTTCATTCCCAGTTCTAA
1 GCATACAGAGGTTCATTCCCAGTTCTAA
17664457 GC
1 GC
17664459 TCGGACTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (28 bp):
GCATACAGAGGTTCATTCCCAGTTCTAA
Found at i:17665339 original size:26 final size:26
Alignment explanation
Indices: 17665303--17665355 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17665293 GTTGACTTAG
17665303 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17665329 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17665355 G
1 G
17665356 ATCGGACTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17666360 original size:159 final size:158
Alignment explanation
Indices: 17666010--17666405 Score: 528
Period size: 159 Copynumber: 2.5 Consensus size: 158
17666000 CCGGCATAGT
* * * * *
17666010 GCCCGC-CTGCTCGTTTCGTCGGTTGGCTTAGGCAAACAGAGTTCATTCCCA-TCTAAGATAAGA
1 GCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
17666073 CCAGATCGAGGGTTGCTGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGGTCAATCCCTGCTT
65 CCAGACCGAGGGTTGCTGCAGCAAGATCGGCAGCACGCAAAGGGGGACCCGATCAATCCCGGCTT
* * *
17666138 GCGCATCCAGCTCCTCTGGCTGGCTGAAC
130 GCGCATCCAGCCCCTCTGGCCGACTGAAC
* * *
17666167 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGGC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** *
17666232 CAGACCGAGGGTTGTTGCAGCAAGATCGGCAGCACGCAGGGGGGGACCCGATCGATCCTCGGCTT
66 CAGACCGAGGGTTGCTGCAGCAAGATCGGCAGCACGCAAAGGGGGACCCGATCAATCC-CGGCTT
*
17666297 GCGCAT-CATGCCCCTCTGGCCGACTGAAT
130 GCGCATCCA-GCCCCTCTGGCCGACTGAAC
* *
17666326 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* *
17666391 CAAACTGAGGGTTGC
66 CAGACCGAGGGTTGC
17666406 AGTAGCATAG
Statistics
Matches: 207, Mismatches: 28, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
157 43 0.21
158 65 0.31
159 99 0.48
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGCTGCAGCAAGATCGGCAGCACGCAAAGGGGGACCCGATCAATCCCGGCTTG
CGCATCCAGCCCCTCTGGCCGACTGAAC
Found at i:17667259 original size:26 final size:25
Alignment explanation
Indices: 17667223--17667274 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
17667213 GTTGACTTAG
17667223 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATT-CCAGTCTAA
* *
17667249 GCATATGGAGTTCATTTCAGTCTAA
1 GCATAGGGAGTTCATTCCAGTCTAA
17667274 G
1 G
17667275 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
GCATAGGGAGTTCATTCCAGTCTAA
Found at i:17669055 original size:26 final size:26
Alignment explanation
Indices: 17669019--17669070 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17669009 TGACTTAGGC
17669019 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
17669045 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
17669071 TCGAACCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:17669578 original size:896 final size:893
Alignment explanation
Indices: 17666357--17686325 Score: 9896
Period size: 898 Copynumber: 22.0 Consensus size: 893
17666347 GTTGACTTAG
* * * * *
17666357 GCATATGGAGTTCATTCCCAGTCTAAGATC-AGACCAAACTGAGGGTTGC-AGTAGCATAGGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGA-CAGCACATGCTG
** * * * * *
17666420 GGCTCGGGCATGTGCTACTGCCGCATTTTTCATCATCGGGGCAGCATCGCCGGAGTATCGCCGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* * *
17666485 GAACCTGACCGGCGGCATT-GGGATCCGGTGATCGGGGGGGCC-AGGGGGTGT-CGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
17666547 TGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAAGCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * ** *
17666612 ACACCCCCTTAAAGGGCGTTTGAGATTTTATGGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * **
17666677 ATGGGGACACTTTTTTCAAATGATCACAAAATGTTGTACACTTCGAGTTTTTATTTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
17666742 TGTGCATGCCTACAAAAATACAAGGATCATGCCTACCAACTTTGGGGCCAAAACTCCTTCC-AAA
389 TGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
17666806 ATAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGC
453 A-AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
*
17666871 CTTGCCATGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *** * * * * *
17666935 GCATCAGTGGGTAGAAATATTAAGATGTGCCTGAACCCACCTACCACCCTATTGATACACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
17667000 GCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGTTTGGCTTAGG
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
17667065 CATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAAGGTTACGGCAGCAGGATTGGCAG
712 CATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGCTGTAGCAGGATCGACAG
* * * * * *
17667130 CACGCAGAGAGGGACCCGGCCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCC
776 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAG-CCCTCTGGCCGGCTGAGCGCC
* *
17667195 CGCACGCTCGTTTTGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
17667249 GCATATGGAGTTCATT-TCAGTCTAAGATCGGACC-GAACCGAGGGTTGCGATAGCACGTGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACTGAGGGTTGCGACAGCACATGCTGG
* * *
17667312 GCTCGGGCATGTGGTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
17667377 AACCTGACCGGCGGCATTGGGGTTCCGACGAT-GGGCGGGGCC-GGGGGGTGTGCGCATATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG-GGGGCCGGGGGGGTGTGCGCACATGATG
* *
17667440 TGTGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGACAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
17667504 ACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
17667569 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
17667634 TGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAAATCCTTCTGAAA
389 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * *
17667699 AAATTTTAAGAAATCCCGAACTGTAAAAAGTTTCT-AAAATCATGAAAAATAAAAAACAAGTCAT
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-TGAAAATCATGAAAAATAGAAAACGAGTCGT
*
17667763 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
17667828 GTATTGGCATGCAAAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
17667893 GCGCATCCCGTCTCTCTTGTCGGCGTAGTGCCTGCTAGCCCGCCCGCCCGTTCGTTTCATCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC--C--GCCCGCCCG--C--TCGTTTCGTCGGTT
* * *
17667958 GGCTTAGGCATACGGAGTTCATTCCCAGTATATGATCAGACCGACCTGAGGGTTG-TGATAGTAG
704 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-CTGAGGGTTGCTG-TAGCAG
* * * * * * *
17668022 GATCGACAGCACGTACAGGGGGACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCTTGCCTG
767 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAG-CCCTCTGGCCGG
* * * * * * * * *
17668087 TTGAGCGCTCGCATGCCCATTTTGTGGGTTGACATAGGCATATGGAGTTCATTCCCAGTCTAT
831 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * **
17668150 TCATACGGAGTTCATTTGCAGTCCAAGATC-AGACCAGACTAAGGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGACAGCACATGCTGG
* * * * ** *
17668214 GCTCGGGCATCTGCTGGTGTCGCATTTTTTTTCGTCGGGGTACCATCAACGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
17668279 AACCTGACCGGCGGCATTAGGGTTCCGGTGATC-AGGGGGCCGGAGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
17668343 GCGATGGGTGCTGGTAGC-TGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGGGAACTC
195 GCGATGGGTGCTGGTA-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
17668407 TCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
17668472 ATGGGGACAC-TTTTTCAAATGGTCAAAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
17668536 TGTGCATTCCAACAAAAATACAAAGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAA
389 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * *
17668601 AAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTATGAAAAGTAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
17668666 TTGCCATGAAACTTCACGTGAAGGCTTAAGCGG-CCATTGTATGAATTTACAAGTCATAAAAATG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
17668730 GCATTGGTAGGCAGAAATATTAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
17668795 GCGCATCCCGTCTCTCTAGCCGGTGTAGTGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGG
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* *
17668860 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCTGTAGCAGGATCGACAG
712 CATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGCTGTAGCAGGATCGACAG
* * * * **
17668925 CACGCATAGGGGGACCTGGCCGATCCCTGGCTTGCGCATCCAGCCCTCTGGTTGGCTGAGCGCCC
776 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCTCTGGCCGGCTGAGCGCCC
17668990 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17669043 GAATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAACTGAAGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* * * *
17669108 GTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
17669173 ACTTGACCTGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGCGGGGGTGTGCACACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGT
* * *
17669238 GCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17669303 CACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
17669368 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTAGCTTAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17669433 GTGCATGCCAAAGAAAATACAAGGATCACCTCAACCAAGTTTGGGGCCAAAATTCCTTCCGAAAA
390 GTGCATGCCAAA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
17669498 AAGTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
17669563 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAAAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17669628 ATTGGCATGCAGAAATATGAATATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * *
17669693 GCATCCCGTCTCTCTTACCGACGTAGTGCCTGCCCACCTGCCCGGTCGTTTCATCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCC--CGC-CC-GCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * ** * *
17669758 GACATACGGAGTTGATTTCTAGTCTAAGATTGGATCGAACTGAGGGTT-ATGATAGCAGGATCGA
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACTGAGGGTTGCTG-TAGCAGGATCGA
* * * * * *
17669822 CAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGTGCATCCCACCCCTCTTGCCGGTTGAGC
773 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCAGCCCTCTGGCCGGCTGAGC
* *
17669887 GCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAA
837 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
17669944 GCATACGAAGTTCCTTTCCAGAGTAAGATCGAACCGGACTGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* * * * *
17670009 CTCCGGAATGTCCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * *
17670073 ACCTGATCGGCGGCATTGGGGTTCCGGTGATTGGGAGGGCC-GGGGGGTGTGCGAACTTGATGTA
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * ** * * *
17670137 TGATTGGTGCTCATAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGACAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
17670202 -GCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
17670266 GGGGACACTTTTTTCAAAGGGTCAAAAAATGTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
17670331 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAA
391 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * *
17670396 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
17670461 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATAGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
17670526 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGACTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
17670591 AATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCTCGTTCCGTCGATTGGCTTAGGCAT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
17670656 ACAGAGTTCATTCCCA-TCTATGATCAGATCAGATTGAGGGTTGCTGCAGCAGGATC-AGCAGCA
715 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACTGAGGGTTGCTGTAGCAGGATCGA-CAGCA
* * * * * * * *
17670719 CGTAGAGGGGGACTCGACCAATCCCCGGCTTACGGATCCAACCCCTCTGGCCGACTGAACGCCCG
778 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC-AGCCCTCTGGCCGGCTGAGCGCCCG
* *
17670784 CATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
17670836 G-ATA-GG-GTT-AGACCGAGGGTTGCTGCAACAGAATCG-A-CAGCACGTAAAGGG--G-GACC
1 GCATACGGAGTTCATTCCCA--G-T-CT---A-AG-ATCGAACCAG-AC-T-GAGGGTTGCGA-C
* * * * * * ***
17670892 TG-ATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCGACTGAGCTCCCGCA-CACTCGTTTCG
53 AGCA-C-ATGCTGGGCTCGGGCAT---G------T---G-CTG-G-TGCCGCATTTTTC--TTCG
* * ** * * *** * **
17670955 T-GGGTTGACTTAGGCAT--ACGGAGTTCAT--TC--CCAATCTAAGCATAC-GAAGTT--CATT
99 TCGGG--G-C--A-CCATCGCCGGAG--CATCGTCGGAGAACCTGA-CCGGCGGCA-TTGGGGTT
* * ** * * * * * *
17671010 CCCAGTCTAAGATTGGACCGGACC-GAGGGTTGTGACAGCACATGCTG-G-GCTCGG-GCATGTG
154 -CC-GGC---GATCGG-GGGGGCCGGGGGGGTGTG-C-GCACATGATGTGCGATGGGTGC-TG-G
*** ** * * * *** * * * **
17671071 TTGGTGCAGCATTTTTCATCGTCGGGGC-A-CCATCATCGGAGTATCGTCGGAGAAC-CTGA---
209 TACTTG--GCCCTTAT-ATTGGC-CCCCTATCCCTCATC--A--AACCTC-GAGAACTCACACCC
*** ** * * ** ** * ** * *
17671130 -C-TGGTG-GCA-TTG-GGGTTT-C-GG--CGAT-CGGGGGGCC---AGAG-GGGTG---TGCGC
265 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * * * ** ** *
17671178 ACA-TGATGTGC-GATGGGT-------GCTGGT--ACTT-G-GCCCTTTATTTGAATTCTTTTGT
330 ACACT-TTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGT
* * * * * *
17671230 GCATTCCTACAAAAATACATGGATCACATCTACCAACTTTGGGGCCAAAACTCCTTCCGAAATAA
392 GCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
17671295 TTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
17671360 CCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
17671425 TGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** * *
17671490 ATCCTGTCTCTCTGGCCAGTATACTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
17671555 CGGAGTTCATTCCAAGTCTAACATCGGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACG
716 CGGAGTTCATTCCCAGTCTAAGATCAGAC-CGACTGAGGGTTGCTGTAGCAGGATCGACAGCACG
* ** * * *
17671620 CAGAGGGGGACCCG-CTTGATCCCCGAATTG-GCGTCCCGCCC-CATTGGCCGGCTGAGCACCCG
780 CAGAGGGGGACCCGAC-CGATCCCCGGCTTGCGCATCCAGCCCTC--TGGCCGGCTGAGCGCCCG
* * *
17671682 CACACTCGTTTCGTGGGTAGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
17671734 GCATACAAAGTTCATTCCCATTCCAAGATCGGACCGGACTGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* * * **
17671799 CTCAGGGCATGTCCTGGTGGCCAACCATTTTTTCTTTGGT-GGGCAGCACCATCGGTAGGACGCA
66 CTC-GGGCATGTGCTGGT-GCC--GCA-TTTTTC-TTCGTCGGG--GCACCATC-GCCGGA-GCA
* * * * *
17671863 TAC-CCGGAGAA-CTGACTGGCTGGCATTAGGGTTCCGGGCAAT-TGGGGGGCCTGGGGGGCGTT
121 T-CGTCGGAGAACCTGACCGGC-GGCATTGGGGTTCC-GGCGATCGGGGGGGCC-GGGGGG-G-T
* * *
17671925 GTTGCG-GCATGATGTGGGGATGGGCTGGCTGGTACTTGGCACC-TATATTGGCCCCTTATCCCG
180 G-TGCGCACATGATGT-GCGATGGG-T-GCTGGTACTTGGC-CCTTATATTGGCCCCCTAT-CC-
*
17671988 CTCCATTAAACCATCGAGAACTCACACCCCCCTTAACA-A-CATTTGAGGATTTTA-AGGTTTGG
238 CT-CATCAAACC-TCGAGAACTCACA-CCCCCTTAA-AGAGCATTTGA-GATTTTACAGGTTT-G
* * *
17672050 CTAGCCAGTAGCCATT-AAGTTGTCTAAAAATGGGGACAATTTTTTCAAAAATGGTCACTAAAT-
297 CT-GCCAGTAGCCATTAAAG-TGTCT-GAAATGGGGACACTTTTTTC--AAATGGTCACAAAATC
* * *
17672113 TTGTACACTT-GAGGTTTTTAGCTGAA-TGTTTTATGCATTCCAAAAAAATACAAGGATCACGTC
357 TTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTC
* *
17672176 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT-AAAAATCCCGAACCGTAAAAAGTTT
421 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
*
17672240 TGAAAATCGTGAAAAATAGAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
486 TGAAAATCATGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
17672305 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
550 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
17672370 AACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCC
615 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* *
17672435 GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGATCAGAC
680 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * *
17672500 CGGACCGAGGGTT-ATGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGGT
745 C-GACTGAGGGTTGCT-GTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * *
17672564 TGCGCATCCTGCCCCTCTGGCCGACTGAGCAG-CCACACGCTCGTTCCGTGGGTTGACTTAGGCA
808 TGCGCATCCAG-CCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
17672628 TACGTAGTTCATTCCCAGTCTAA
871 TACGGAGTTCATTCCCAGTCTAA
* * * ** *
17672651 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
** ** * * *
17672716 CTCAAGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCAGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * ** * *
17672781 ACTTGACCGGCGGCATTCGGGTTTCTACGATCGGGGGGGCCGAGGGGATGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * * *
17672846 TGATGGGTGCTGCTACTTGGCCCTCATATTGGCCCCCTATCCCTCATGAAACCTCAAGAACTCAT
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
17672911 ACCCACTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAATAGTCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17672976 GGGGACACTTTTTTCTAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
**
17673041 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATGCTCCTTCCGAAAAA
391 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * * *
17673106 GTTTTGAAAAATCCCGAAACGCAAAAAGTTTTGAAAATCGTGAAAAAAAGAAAACAAGTCATCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
17673171 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
17673236 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
17673301 CATCCCGTCTTTCTGGACGGCGTAGTGCCCGTGCCCACCCACTTGTTTCGTTGGTTGGCTTAGGT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCC--GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * **
17673366 ATACGAAGTTCATTCCCAGTCAAAGATCAGACCGAACTGAGGGTTGC-GCTGGCAGGATTGGTAG
713 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACTGAGGGTTGCTG-TAGCAGGATCGACAG
** * ** * * *
17673430 CACATAGAGGGGGACTCGGTCGATCCCCAGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCC
776 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCAGCCCTCTGGCCGGCTGAGCGCC
* * * *
17673495 CGTACGCTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
17673549 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCGGACCGGGGGTTGCGATAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* * *
17673614 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGTACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * ** * * * * *
17673679 ACTTGACCGACGGCATTGGGGTTCCGAAGATCGGGGGGGCCGGAGGGGTGTGCGCCCTTGTTGTA
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
17673744 TGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
17673809 ATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17673874 GGGGACACTTTTTTCAAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTTTTTT
326 GGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17673939 GTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTCCAAAAAA
390 GTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
17674004 ATTTT-AAAAAT-CCGAA-TGCAAAAAGTTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTGT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTG-AAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
17674066 T-CCATGAAAC-TCACATGAAGGCTTAA--GA-C-TTGTATGAATTTGCAAGCCAACAAAAATGG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-ATAAAAATGG
* * *
17674125 CATTGGCACGCAG--A-AT-AAGATGTGCCT--ATCCA-CTACCACGC-ATCGATCCACGGCTT-
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * ** ** ***** * ****** **** **
17674181 CGCAT-CCGTCTCTTTGACTCCGAGTTTTGGGCTAAAACTCC-TTCAAAAAAATAAAAAT--CCG
648 CGCATCCCGTCTCTCTGGC-CGGCGTAGTGCCCGCCCGC-CCGCTC-GTTTCGT-CGGTTGGCTT
* * * **** ** * ** * *
17674242 ACGCGCAAAAGG-TTTCAAAAATCA-TGAAAAAT-AGA-AAAC-GAGTCGTCTTGCCATGAAACT
709 A-G-GCATACGGAGTTC-ATTCCCAGTCTAAGATCAGACCGACTGAG--G-GTTG-C-TG-TA--
* * * * **** ** ****
17674302 TCACGTGA-AGGCTTAAGGGAC-CATTGTATGAATTTACAAG-CC-ATAAAAGTGGCATTG-GCA
763 GCA-G-GATCGAC---A-GCACGCA--G-A-G-GGGGACCCGACCGAT--CCCCGGC-TTGCGCA
* *** * ** * * * * * ** *
17674362 -CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATCT
814 TC-CAGCCCTCTG--GCCG-G-CTGAGCGC-CC--GCACGC--TCG-T-TTCG---TG-G-GT-T
* * ** * * * *
17674426 CGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTCCATCGGTTGGCTTAG
861 -GACT-T-AGGCATACGGAGT------TCA------------TTCC--CAG-T--C-TAA
* * * *
17674486 GCATATGAAGTTCATTCCCAGTCTAAGATC-AGACCGGACTGAGGGTTACGATAGTAGGATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGG-T----T-G--CGA-CAGC
* * ** *** *** * * * *
17674550 AGCACGCAGAGGGGGACTCGACCGATCCCCAACTTG-CGCATCTCGTCCCTCTGGCCGGCTGAGC
56 A-CATGC----TGGG-CTCGGGC-ATGTGC-TGGTGCCGCAT-T--T--TTCT--TCGTC-G-GG
* ** * ** *
17674614 GCCCGCA-CGCTCGGTTCATGGGCTCAGGTATG-TTCTG---GTGCCGCATTTTTCTTCCCCGGG
104 GCAC-CATCGC-CGGAGCAT-CG-TC-GG-A-GAACCTGACCG-GCGGCA------TT----GGG
* * ** * * *
17674674 GCACCATCGTCAGAGCATCATCGGAGAACCTGACCGGTGGTATTGGG-GTTC-CGACGATTGAGG
151 G-----T--TCCG-GC--GATCGG-G---GGGGCCGG-GG----GGGTGTGCGC-AC-A-TGA-T
* * * ** ** ** ** * **
17674737 GGGCCGGAGGGGAGGGTG-TGCGCACATGATGTGCGATGGGTGCTGG-TACTTGGCCCTTATATT
193 GTG-C-GA----TGGGTGCTG-GTAC-T--TG-GCCCT-TATATTGGCCCCCTATCCC------T
* *
17674800 GGCCCCCTATCCCTCAGCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGGTTTTACA
240 ------C-A----T---CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
17674865 GGTTTGTTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
291 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
17674930 CTTGTACACTCCGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTT
356 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGT
* * * * *
17674995 CTACAAAGTTT-GGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAGTCACGAACCGCAAAAAGTT
420 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
** *
17675059 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGG
485 TTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
17675124 ACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
550 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * *
17675189 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAATGCCC
615 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * *
17675254 GCCCACCCACCCGCCTGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGCCTAA
680 G----CCCGCCCG-CT-C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * * *
17675319 GATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCTCGTAGAGAGGGACCCGATCGATC
737 GATCAGA-CCGACTGAGGGTTGCTGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATC
* ** * * * *
17675384 CTCAACTTGTGCATCCA-CCGCTCTGGCCGGCTGAGTGCCCACACGCTCGTTTCATGGGTTGACT
801 CCCGGCTTGCGCATCCAGCC-CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
17675448 TAAGCATACGGAGTTCATTCCCAGTTTAC
865 TAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** ** * * * * *** ** *
17675477 G-AT-CGGA--CCGA-ACCGAGGGGTGCGA-C-AGCACATG-CTG-GGCTCGGGGGGGC-CGGGG
1 GCATACGGAGTTC-ATTCCCA-GTCTAAGATCGAAC-CA-GACTGAGGGTTGCGACAGCACATGC
* ** * * *** * ** * * * *
17675532 TGTG-TGCGCACATGATTGCGATGGGTGCTAGTACTTGGCCCTT-ATATTGGCCCCCTAT-ACCT
62 TGGGCT-CGGGCATG--TGC--T-GGTGC-CGCA-TT-TTTCTTCGT-CGGGGCACC-ATCGCCG
* * * * ** ** ** * ** **
17675594 AATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTAGAGATTTTACAGG-TTTGCTGCCA
116 GAGC-ATCGTCGGAGAAC-CTGACCGGC-----G-GCATT-G-G-GGTT-CCGGCGAT-C-G-GG
** ****** * ** * ** ** *** *
17675657 GTAGCCATTAAAGTGT-CTG-A-A--ATG-GGGAT-AAT-TTTTTCAAATGGTCACAAAATCTTG
166 GGGGCCGGGGGGGTGTGC-GCACATGATGTGCGATGGGTGCTGGT-ACTTGG-C-CCTTATATTG
* ** * ** * ** * ***** ** ***** * * ** * *
17675714 TACACTTCGAGT-TTTTAGTTGAA-TTTTTTTA-TGCATGCCAAAAAAAAAAACA-AGGATCACG
227 -GC-CCCCTA-TCCCTCA-TCAAACCTCGAGAACT-CACACCCCCTTAAAGAGCATTTGA-GA-T
* * ** ** * * * * * ** * *
17675775 TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT-TTTAAAAAATCCCGAACAGCAAAAAG
285 TTTA-CAGGTTTGCTGCCAGTA-GCCATT----AAAGTGTCT--GAAAT-GGGGACA-C-----T
** * * * *** *
17675839 TTTTGAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCATAAG
335 TTTTTCAAA-TG-G-----T-CACAA--A---ATCTTG---T-ACACTT--C--G-AGTTTTTAG
* * * * * * * ** ** *
17675904 -GGACCATTGTATGAATT-TACAAGCCATAAAAATGGCATTGGCATGCA-GAAATATGAAG-AT-
378 CTGA--ATT-T-T--TTTGTGCATGCCAAAAAAAT-ACA-AGG-AT-CACG-TCTACCAAGTTTG
* * * * ** *** *** * * ****
17675964 GTGCCTAAAC-CC-ACC--TACCACCCT-ATCGATCCAG-GCTTGCGCATCCCGTCTCTCTG---
432 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC---CGCAAAAAGT-T-T-TGAAA
* * **** ** * * ** ** **
17676020 GTC--G--ACATAGTGCCCG-CCCG-CCTGCC-CGCCTACTCGTTTCGTCGGTTGGCTT-A-GG-
491 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACT--TCACGT--GAAGGCTTAAGGGA
* * ** * * * *** ** * * **
17676075 -CATACGGAGTTCA-TTCCCA-CTC-TAAGATAGGACCGGACCGAGGGTTGCGGCAGCA-G--GA
551 CCAT-TGTA-TGAATTTACAAGC-CATAA-A-A--A-TGG-CATTGGCATGCAGAAATATGAAGA
* * * ** ** ** ** * * * * * *
17676133 T-CGACTGAACGTA-GAAGGGGACCCGGTCGATCCTCGACTTG-TCATCCCGCCCCTCTGGTC-G
607 TGTGCCTAAACCCACCTA--CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
** ** * * * *
17676194 -GT--TGAACGCCCGCAAGCTCATTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCT
670 CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * * *** * * *
17676256 AAG--CATA-C-A--GA--GTT-CAT-TCCCA--ATCTA-AG-A-TCAGA-CCAGA-TCGA-GGG
735 AAGATCAGACCGACTGAGGGTTGC-TGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGA
** ** * * * ** * * * *** *
17676303 T-TGCGG-TAACACATGCTGGGCTC-GAGCATGTGCTG-GTG-CCGTATTTTTC-TTCACCG-GG
799 TCCCCGGCTTGCGCATCCAGCCCTCTG-GC-CG-GCTGAGCGCCCGCA-CGCTCGTT--TCGTGG
*** ** ** * ** * *
17676361 GCACCATCGTCGGAGCATCACCGGAGAACCTGACC-GAC--G
858 G-TTGA-C-TTAG-GCAT-A-CGGAGTTCATTCCCAGTCTAA
* * * * ** * * * *
17676400 GCAT-TGGGGTTC---CGGCAATC-GGGGT-G--GCAG--GGGGGGTGTGCGTACATG---ATG-
1 GCATACGGAGTTCATTC-CCAGTCTAAGATCGAACCAGACTGAGGGT-TGCG-ACA-GCACATGC
* * * * * * ** * ***** * *
17676451 TGCGATGGGTGC-TAGTACTTG-GCC-C-TTATAT-TGGGCCCTTATACCTCATCAAACCTCGAG
62 TGGGCTCGG-GCAT-GTGCTGGTGCCGCATT-TTTCTTCGTCGGGGCA-C-CATC--GCC-GGAG
* ** *** * **** ** * * ** ** ** ***
17676511 -AAC-TCACACCCCCTTA--AAAAGCATTTGAGATTTTACAG-G-T--TTGCTGCCAGTAGCCAT
119 CATCGTCGGAGAACCTGACCGGCGGCA-TTG-G-GGTTCCGGCGATCGGGGGGGCC-GGGGGGGT
** * * * *** * ** ** *** * * ** *
17676568 -TAAAGTATATGAAATG-GGGA-CACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
180 GT-GCGCACATG--ATGTGCGATGGGTGCTGGT-ACTTGG-C-CCTTATATTG-GC-CCCCTA-T
** * *** * * ** ***** * * *
17676629 -TTTTATCTGAATGTTTGTGTGCATGC-CAACAAAAATACAAGGATCATCTCTAACAATTTTGGT
236 CCCTCATC--AAACCTCGAGAAC-T-CAC-ACCCCCTTA-AA-GAGCAT-T-TGA-GA-TTT--T
* *** * * *** *** ** ** * ** ** *
17676692 GCCAAAACTT-CTTCC-GAAAAAATTTTAAAAAATCTCG-AACCGTAAAAAGTTTTGAAAATCGT
288 -AC-AGGTTTGCTGCCAGTAGCCA--TTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGT
* * ** * ** ** ****
17676754 GA-AAAA--TAG-A-A-AACGAGTCGTCTT-GCCATGAA--ACTTCAT--ATG---AAGGCTTA-
348 CACAAAATCTTGTACACTTCGAGT--TTTTAG-C-TGAATTTTTTTGTGCATGCCAAAAAAATAC
* * * * ** * *** * * * * * * * * **
17676804 AGGGACCA-TTGTATGAATTTTCAAGCCATAAAAATGGCATAGGCACGTAGAAATATGAAGATGT
409 AAGGATCACGTCTACCAAGTTTGGGGCC--AAAACT--CCT--TC-CGAAAAAATTTTAAAAAAT
** *** * * * * ** * **
17676868 GCCTAAACC-CACCTAGCACCCTATTG-ATA-CATG---ACTTGCGCATCCCGTC-TCTCTGGCC
467 -CCCGAACCGCA---A--AAAGTTTTGAAAATCATGAAAAATAG-AAAACGAGTCGTCT-T-G-C
** * * *** ** ** * * * *
17676926 GGCGTAGTGCCCACCCGTTCGCCTGCTCG-TTTCGTCGGTTGC-TTAGGCATACGGAGTT-CATT
522 --C--A-TG---AAAC-TTCACGTGAAGGCTTAAG--GG-ACCATT--G--TATGAATTTACA-A
* * * * * ** * *** * * * * * *****
17676988 CCCAGTCTAAGATCGAACCGG-A-CCGAGGGTTAATGCAGCAAGATCGAC-AGCACGCAGAGGGG
570 GCCA-T-AAAAATGGCATTGGCATGC-AGAAAT-ATGAAG-ATG-T-GCCTA-AACCCA-CCTAC
* * * * ** **** * ** * *
17677050 GACCCGA-CTGATCCCCGACTTATGCATCTTACCCCTCTGGCC-G-GT--TGAGCGCCCACACGC
626 CACCCTATC-GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * ** ** *
17677110 ACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTTCAGTCT---A--AG-CTTA-TG-GAG
690 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACTGAGGG
* * * * * * *
17677167 TT-CTTTCCCAGTCTAAGATCAGACTGGAC-CGAGGGTTGTGGGAGCACATGCTGGGCTCGA-GC
755 TTGCTGT---AG-C-AGGATC-GACAGCACGC-AGAG--G-GGGA-C-C---C--GAC-CGATCC
** * **** * * * * * *
17677229 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGCAGGAGCATCGCCTGAGAAC-CTGA
802 CCG-GCT--TG-CGCATCCAGC--CCTC-TGG--CC--GGC-TGAG---CGCC--CGCACGCT--
*** * ** * * * * **
17677293 CCGAGGCATTGGGGTTCCGACGATCGGGGGGGCCGA-AGGGGGGTGTGCA--CACATGATGTGT
848 -CGTTTC-GT-GGGTT--GAC--T----TAGG-C-ATA-CGGAGT-T-CATTCCCA-G-TCTAA
* * * * * * * *
17677354 G-ATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACA--ACAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* ** * ** ** * ** * * ** ** * * * *
17677416 CAGCATGCA-GAGGGGGACCCG-ACTGATCCTCGGC-TTGCA-CATC-CCCCATC-TGGCCGGCT
66 C-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG-A
* * * * **
17677475 GAGCGGCTG-CAC-GC-TCATTTCGTGGGTTAACTTAGGC-ATAC-GGAGTTCATTCATAGTCTA
129 GAAC--CTGAC-CGGCGGCA-TT-G-GGGTT--C--CGGCGAT-CGGGGGGGC---C---G----
* * * * * *
17677535 AGCATACGGTGTTAATTCCCAGTCTAAGATCAGAT-CGGATTGAGGGTTGC-GGTAGCACATGCT
173 -G-----GGGGGT-GTGCGCA--C-ATGAT--G-TGC-GA-T--GGG-TGCTGGT---AC-T--T
* * * ** * * * * *
17677598 AGGGTCGGGCATATGTTGGTGCTGCATTTCTCTTCGTCAGCGCACTATCGC-CGGAGAACTTGAC
214 --GG-C--CCTTATATT-G-GCCCCCTATC-C--C-TCA--TCA--AAC-CTC-GAGAAC-TCAC
**** * ** * ** * * * * *
17677662 TGGTGGCATT---G-GGGTTCCGAAGATCGGGGGGTCCGGGGGGTGTGC-GCACATGATGTGCGA
261 --ACCCCCTTAAAGAGCATT-TG-AGAT-----TTTAC---AGGTTTGCTGC-CA-G-T-AGCCA
** * * * * * ** ** ** * *
17677722 -T-GGGTG-CTGGTACT--TGACCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTC
310 TTAAAGTGTCT-GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAAA-TCTTGTACAC
*** *** ** * *
17677782 TTACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
365 TT--CGAGTT-TTTAGC---TGA-ATTTT-----TTTG-TG-CA-T-GCCAAAAAAAT-AC---A
* * ** * *
17677847 ATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTT-CGACTTTTTAGTTGAAT
410 A---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCCGA------A----AA-
** ** * * * *
17677907 TTTTTTGTGCATGCCAAAAAAATATACGAGGATCACGTGTAACAAGTTTGGGGTCAAAACTCCTT
454 --AATT-T---T----AAAAAAT-CCCGA--A-C-C--GCAAAAAGTTT----TGAAAA-T-C-A
** * * * * * * *** *
17677972 TCGAAAAAATTTTAAAA-AATCTCGAAC-TG-TA-AAAAGTTTCAAAAATCGTGAAAAATAGAAA
495 T-G-AAAAA-TAGAAAACGA-GTCG-TCTTGCCATGAAA-CTTC----A-CGTGAAGGCT---TA
* * * * * * * ***
17678033 ACGAGTTG-TC-TTGCCATGAAACTTCACGTGAAGGC-T-TAAA-GGACCATT-GTATGAATTTA
546 A-G-G--GACCATTG-TATG-AA-TTTAC---AAGCCATAAAAATGG--CATTGGCATGCAGAAA
* * * ** * *** * *** * **
17678092 CAAGCCATAAAAATGGC-AATGGCA-C-ACAAAAATAT-GA---A--GATGTGC-CTAAACC--C
599 TATG--A-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT-TGCGC-ATCCCGTC
* * ** * ** ** * * * * * *
17678145 AC-CT-ACCACCCTA-TCGATCCACGGCTTGCGCATCCCGTCTC-TCCAGCTGGCGTAGTGC--C
659 TCTCTGGCCGGCGTAGT-G--CC-C-GCCCGC-CCGCTCGTTTCGT-CGGTTGGCTTAG-GCATA
** * * * * * * ** * ** * * * * *
17678204 CGCCCGCTCATTTCGTCAGT-T-GGCTTAGGCATACAGAGTTCATTCCCAGT-GTAAGATTGGAC
716 CG-GAGTTCA-TTC-CCAGTCTAAGATCAGACCGACTGAG--GGTT-GCTGTAGCAGGA-TCGA-
** * * *** * * ** *
17678266 CAG-AC-C-GAGGGTTACGGTAGCAAGATCGA-CAGCACGCGG--TGGGGGGCAAGACCGAT-TC
773 CAGCACGCAGAGGG----GG-A-CCCGACCGATC--C-C-CGGCTTGCGCATCCAGCCCTCTGGC
* * * * **** * * ** * ***
17678324 CTAGCTTGCGCATCCCGGC-C-CTC---TGGTCGGG-TGAGCGCCCGTAT-TGTCGTTTCGTGGG
828 C-GGC-TGAGC-GCCC-GCACGCTCGTTTCGT-GGGTTGA-CTTAGGCATACGGAG-TTCATTCC
* * *
17678382 TAGACTTAG
886 CAGTC-TAA
** * ** * * ** *
17678391 GCATACGGAGTTCATTTTCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* ** * * *
17678456 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCACTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
17678521 ACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGCGCC-GGGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
17678585 TGGTGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17678650 ACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17678715 GGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17678779 TGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTTGGGGCCAAAACTCTTTTCGAAAA
391 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAA
* * * * ** **
17678844 AATTTTTAAAAATCTCGTATCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
17678909 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
17678974 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCGACTG-TTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ***
17679038 GCATCCCGTCTCTCTGGTCGGTGTAGTGCCCG--C-TCC-CTCGTTTCGTCAAATGGCTTAGGCA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * **
17679099 TACGGAGTTCATTCTCAGTCTAAGATTAGACCAGACCGAGGGTTG-TGATAGCAGGATCGGTAGC
714 TACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGCTG-TAGCAGGATCGACAGC
* * **
17679163 ATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCTC-GCCCTTCTGGCCGGCTGAGTACC
777 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC-CAGCCC-TCTGGCCGGCTGAGCGCC
* *
17679227 CGCACGCTCGTTTCGTGGGTTGACTTCGGCATAAGGAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
17679281 G-AT-C--AG---------A--C------CGAA-C---C-GAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* * * *
17679320 CTCAGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCG-CTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAG
** * * ** * * * *
17679384 AACCTGACTAGCGGCATTAGGCTTCCGATGATCGGGGAGGCCTAGGGGGTTGTACGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
17679449 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17679513 ACACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCTAGTAGCCATTAAAGTGTCTGA
259 ACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
17679578 AATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATC-CTTCGAGTTTTTAGCTGAATTGT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-CACTTCGAGTTTTTAGCTGAATTTT
* * *
17679642 TTTATGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGA
387 TTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * ** *
17679707 AAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATTGTTAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
* *
17679772 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAGTTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ***
17679837 GTCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
17679902 TACGTATCCTGTCTCTCTGGTCGACGTAGTGCTCGACCGCCCATCCGTCCGTTCGTTTCATCGGT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCG--C--CCGCCCGCTCGTTTCGTCGGT
* * *** *
17679967 TGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGAGGGTTCCAACAACA
703 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACT-GAGGGTTGCTGTAGCA
* * ** * * *
17680031 GGATCGGCAGCACGTAGAGGGGGACCCGGTCGAT-CCCGGTTTGCACATCCTGCCCCTCTGGCCG
766 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAG-CCCTCTGGCCG
* * * *
17680095 GTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTCAGGCATATGGAGTTCATTCCCAGTCTAA
830 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17680159 G-AT-C-G-G---------A-TC---G---G-A-C---C-GAGGGTTGTGGCAGCACATACGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* * * * ** * * *
17680198 CTCAGGCATGTGCTGGTGTCACATTTTTCATCACCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
17680263 ACCTGACCGGCAGCATTGGGGTTTCGGCAATCGGGGGGGCCGGGGGGGTGTGCGCACATCATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
17680328 TGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
17680393 ACTCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17680458 CGGGACGCTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
17680523 TGCATGCGAACAAAAATACAAGGATCATGTCTAACAATTTTGGGGCCAACACCCCTTCCGAAAAA
391 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
17680588 ATTTTAAAAAATCCCAAATCC-CAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGGGTCGTCT
455 ATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
17680652 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
17680717 ATTGGCATGCAGAAATCTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
17680782 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGTCCGCTTGTTTCGTCGATTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C---CCGCTCGTTTCGTCGGTTGGCTTA
** ** *
17680847 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTG-TAGCAGCAGGATC-A
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGCT-GTAGCAGGATCGA
* * ** * * *
17680910 CCAGCACGCAGAGAGGGACCCGATCGATCCCCGATTTGCGCATCCCGCCC-CTGTAACCGGGTGA
773 -CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCTCTG--GCCGGCTGA
* * *
17680974 GTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCGTTCCCAGTCTAA
835 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *** * * ** * *
17681032 GCATACGAAGTTCATTCCAAGTCTAAGATCGGATTGGACCGAAGGTTGCGGTAGCAAATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* * *
17681097 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTG-CTGGGGCACCAT----------T-ATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAG
* ** ** *
17681150 AACCTAACCGGTAGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGCGGTGTGCGCACAAGAT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGG-GGTGTGCGCACATGAT
* *
17681215 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
17681280 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
17681345 AATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
17681410 TTGTGCACGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGCGCCAAAA---C-TCC---
388 TTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
17681468 ------TT------T---------C---------T-AAAATCGTGAAAAATAGAAAACGAGTTGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
*
17681502 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
17681567 GCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
17681632 GCACATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
17681697 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCCAACCGAGGGTTG-TGGCAGCAGGATAGGCA
712 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACTGAGGGTTGCT-GTAGCAGGATCGACA
* ** * * *
17681761 GCACGCAGAGGGGGACCCGATCGATCCCTAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCAC
775 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAG-CCCTCTGGCCGGCTGAGCGC
* * * * *
17681826 CCGCACGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAC
839 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * ** * *
17681881 GCATATGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGCTACGGTAGCACGTGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * *
17681946 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGAGGCACCATCGTCAGAGCATCGCCGAAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * *
17682011 ATCTAACCGACGACATTGGGGTTCTGGCGATCGGGGGGGTC-GGGGGGTGTGCGCACATGGTGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
17682075 CCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17682140 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATTAAAGTGTTTGAAA
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAA
* * *
17682205 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTCT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * *
17682270 ATGCATGCTATAAAAAATACAAGGATCACGTCCACCATGTTTCGGGCCAAAAATCCTTTCGAAAA
390 GTGCATGCCA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** *
17682335 AATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
17682400 TGCCATGAAACTTCACGTGTAGGCTTAAGGGTCCATTATAAGAATTTACAAGCCA-AAAAATTGG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGG
* * *
17682464 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCAATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * **
17682529 CGCATCCCATCTCTTTGGCCGGCGTCGTGTTCGCCCGACCCGTCTGCCCGCTCGTTTCATCATTT
648 CGCATCCCGTCTCTCTGGCCGGCGT--AG-T-GCCCG--CC--C-GCCCGCTCGTTTCGTCGGTT
* * * ***
17682594 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAAT-GGACTAGACTGAGGGTTGCAACAGCAG
704 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGAC-CGACTGAGGGTTGCTGTAGCAG
* * * ** * * *
17682658 GATAGGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCTGG
767 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAG-CCCTCTGGCCGG
*
17682723 CTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
17682786 GCATACGAAGTTCATTCCCATTCTAAGATC-AGACCGGACCGAGGGTTGTGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGACAGCACATGCTGG
*
17682850 GCTCGGGCACGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-C----CA------GAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * *
17682904 AACCTGACCGGCAGCACTAGGGTTCTGG-GATC-GGGGGGCCGGGGGGGTGTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
17682967 GAGATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCAAT-CCTCCTCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17683031 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17683096 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * **
17683161 GTGCTTGGCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTAAAAACTCCTTCCGAAAA
390 GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* **
17683226 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
17683291 TGCCATGAAACTTCACGTGCAGGCCTAAGGGACCATTGT-TGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
17683355 ATTGGCACACAGAAATATAAAGATGTGCCTAAA-CCACCTGCCACCCTATCGATCCAC-ACTTGT
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
17683418 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGGCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
** * * * *
17683483 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGA-TCAAGGATTG-TGGCAGCAAGATCG
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACT-GAGGGTTGCT-GTAGCAGGATCG
** * * * * * *
17683546 GTAGCACGTAGAGGGGGACCCGACCGATTCCCGGCTTACGCATCCCACCCCTCTGGTCGGATGAG
772 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCAGCCCTCTGGCCGGCTGAG
* *
17683611 CG-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAA
836 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
17683668 GCATACGAAGTTCATTCCCAGTCTAAGATCGAA-CTGAACCAAGAGTTCCGACAGCAAATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACTGAGGGTTGCGACAGCACATGCTGG
* * * * * *
17683732 GCTCGGGCATATGCTGGTGTCGCATTTTTCTTCATGGGGGCACCATCGTCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *** * * * * *
17683797 AACCTAACCGGCGGCATTGGGGTTCTGGTGATC-GCATGGTCGGGGGGATATACGGACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
17683861 GCAATGGGTGCTGGTACTCGACCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17683926 GACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17683991 TGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTT
325 TGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
17684056 TGTGCAAGCCAATAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCG-AAA
389 TGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * *
17684120 AATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
17684185 TGCCGTGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAACTTACAAGCCATAAGAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
17684250 ATTGGCACACAGAAATATAAAGATGTGCCTAAAGCCACCTACCACCCTATTGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * *
17684315 GCATCTCGTCTTTCTGGCCAACGTAGT----GCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
17684376 TACGGTGTTCATTCCCAGTCTAAGTTCGGACCAGACTGAGGGTTG-TGACAGTAGGATCGGCAGC
714 TACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGCTG-TAGCAGGATCGACAGC
* * * ** * * *
17684440 ACGCAGAAGGGGACCCGACCAATCCTCGGCTTATGCATCCCGCCCCTTTGGCCGACTGAGCGCCC
777 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAG-CCCTCTGGCCGGCTGAGCGCCC
* * * *
17684505 GTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
17684558 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* * * ** * *
17684623 CTCGGGCATTTGCTAGTGCCGCATTTTTCTTCATCGGGGCATGATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
17684688 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGGCCAAGAGTGGTTGTACGCACATGAT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGGCC--GGGGGGGTGTGCGCACATGAT
* *
17684753 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTAGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
17684818 CACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
17684883 AATGGGAACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
17684948 TTGTGAATGCCAAAAAAAATACAAGGATAATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAA
388 TTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
17685013 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
*
17685078 CTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
17685143 GCATTGGCTTGCAGACATATGAAGATGTGCCTAAACCCA-CTAACCACCCTATCGATCCACGGCT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCT
* * *
17685207 TGCGTATCTCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * * * * * **
17685268 GCATACGGAGTTCATTCTTAGTGTAAGATCAAACTAGACCGAGGGTTGCGGTAGCAGGATCGGTA
711 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGACTGAGGGTTGCTGTAGCAGGATCGACA
*
17685333 GCACGCAGAGGGGGA-CC-A--GA---------T---CA---A----T-T---C--C----CGCT
775 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCTCTGGCCGGCTGAGCGCC
* *
17685365 TG--CGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17685417 GCATACAGAGTTCATTCCCA-TCTAAGATCGAACCGGACTGAGGGTTGCGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
* * *
17685481 CTTGGGCATGTGCTGGTGCCACATTTCTCTTCGTCGGGGCACCAT--------CA---TCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
** * * *
17685535 ACAAGACCGACGGCATT-GGGTTCCGGCTATC-GGGGGGCCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
17685598 TGATGGGTGCTGATACTTGGCCCTTATATT-GCCCCCTATTCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17685662 ACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17685727 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17685791 TGCATGCCAACAAAAATACAAGGATCACTTCTTCCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
391 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
17685856 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTG-AAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
17685920 GCCATTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
17685985 TTGGCACGCAGAAATGTGAAGATGTGCCTAAACCCACATACCACCCAATC-ATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** *
17686049 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCTTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** * * *
17686114 ACGGAGTTCATTCCCAGTTTAAGATCGGAGTAGA-TGAAGGGCTGCGGCAGCAGGATCGACAGCA
715 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACTG-AGGGTTGCTGTAGCAGGATCGACAGCA
* * *
17686178 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCATCCCTCTGGCCGACTGAGCGCCCG
778 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCAGCCCTCTGGCCGGCTGAGCGCCCG
*
17686243 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
17686295 GCATACGGAGTTCATTCCTAGTCTAAGATCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG
17686326 TCGGAGAACC
Statistics
Matches: 14649, Mismatches: 3040, Indels: 2789
0.72 0.15 0.14
Matches are distributed among these distances:
838 37 0.00
839 127 0.01
840 97 0.01
841 145 0.01
842 140 0.01
843 2 0.00
844 8 0.00
846 15 0.00
847 20 0.00
848 158 0.01
849 115 0.01
850 6 0.00
851 1 0.00
852 184 0.01
855 1 0.00
857 127 0.01
858 199 0.01
859 67 0.00
860 42 0.00
861 8 0.00
862 8 0.00
863 3 0.00
864 110 0.01
865 35 0.00
866 330 0.02
867 100 0.01
868 1 0.00
869 9 0.00
870 4 0.00
871 10 0.00
872 6 0.00
873 121 0.01
874 64 0.00
875 9 0.00
876 10 0.00
877 436 0.03
878 305 0.02
879 115 0.01
880 21 0.00
881 34 0.00
882 187 0.01
883 166 0.01
884 31 0.00
885 27 0.00
886 26 0.00
887 29 0.00
888 88 0.01
889 182 0.01
890 525 0.04
891 399 0.03
892 588 0.04
893 547 0.04
894 601 0.04
895 761 0.05
896 864 0.06
897 547 0.04
898 1077 0.07
899 282 0.02
900 181 0.01
901 381 0.03
902 532 0.04
903 177 0.01
904 22 0.00
905 295 0.02
906 14 0.00
907 32 0.00
908 53 0.00
909 25 0.00
910 35 0.00
911 29 0.00
912 33 0.00
913 20 0.00
914 18 0.00
915 79 0.01
916 363 0.02
917 161 0.01
918 24 0.00
919 41 0.00
920 49 0.00
921 18 0.00
922 24 0.00
923 23 0.00
924 25 0.00
925 6 0.00
926 15 0.00
927 15 0.00
928 5 0.00
929 8 0.00
930 10 0.00
931 9 0.00
932 10 0.00
933 4 0.00
934 6 0.00
935 6 0.00
936 2 0.00
937 44 0.00
938 6 0.00
939 40 0.00
940 5 0.00
941 1 0.00
942 8 0.00
943 14 0.00
944 1 0.00
945 6 0.00
946 6 0.00
947 15 0.00
948 5 0.00
949 30 0.00
950 24 0.00
951 46 0.00
952 34 0.00
953 30 0.00
954 24 0.00
955 32 0.00
956 23 0.00
957 13 0.00
958 31 0.00
959 16 0.00
960 13 0.00
961 15 0.00
962 16 0.00
963 11 0.00
964 9 0.00
965 11 0.00
966 7 0.00
967 7 0.00
968 12 0.00
969 6 0.00
970 5 0.00
971 13 0.00
972 10 0.00
973 3 0.00
974 4 0.00
975 12 0.00
976 1 0.00
977 4 0.00
978 4 0.00
979 8 0.00
980 15 0.00
981 9 0.00
982 6 0.00
983 2 0.00
984 3 0.00
985 6 0.00
986 9 0.00
987 10 0.00
988 13 0.00
989 15 0.00
990 9 0.00
991 5 0.00
992 3 0.00
993 6 0.00
994 7 0.00
995 5 0.00
996 2 0.00
997 5 0.00
998 13 0.00
999 7 0.00
1000 12 0.00
1001 6 0.00
1002 13 0.00
1003 12 0.00
1004 5 0.00
1005 7 0.00
1006 13 0.00
1007 7 0.00
1008 4 0.00
1009 5 0.00
1010 3 0.00
1011 10 0.00
1012 1 0.00
1013 1 0.00
1014 4 0.00
1015 10 0.00
1016 1 0.00
1017 8 0.00
1018 4 0.00
1019 5 0.00
1020 8 0.00
1021 7 0.00
1023 1 0.00
1024 65 0.00
1025 117 0.01
1026 190 0.01
1027 147 0.01
1028 77 0.01
1029 111 0.01
1030 210 0.01
1031 75 0.01
1032 72 0.00
1033 58 0.00
1034 38 0.00
1035 30 0.00
1036 41 0.00
1037 41 0.00
1038 89 0.01
1039 26 0.00
1040 50 0.00
1041 67 0.00
1042 39 0.00
1043 28 0.00
1044 32 0.00
1045 26 0.00
1046 13 0.00
1047 22 0.00
1048 60 0.00
1049 16 0.00
1050 14 0.00
1051 36 0.00
1052 10 0.00
1053 115 0.01
1054 11 0.00
1055 10 0.00
1056 9 0.00
1057 9 0.00
1058 8 0.00
1059 8 0.00
1060 41 0.00
1061 27 0.00
1062 21 0.00
1063 7 0.00
1064 13 0.00
1065 5 0.00
1066 13 0.00
1067 5 0.00
1068 19 0.00
1069 50 0.00
1070 27 0.00
1071 48 0.00
1072 108 0.01
1073 44 0.00
1074 18 0.00
1075 36 0.00
1076 9 0.00
1077 9 0.00
1078 6 0.00
1079 6 0.00
1080 1 0.00
1081 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGACTGAGGGTTGCTGTAGCAGGATCGACAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17670934 original size:158 final size:158
Alignment explanation
Indices: 17670620--17670994 Score: 443
Period size: 158 Copynumber: 2.4 Consensus size: 158
17670610 ACGTAGTGCC
* * * * * * *
17670620 CGCCCGCCTGCTCGTTCCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCATCTATGATCAGAT
1 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATCTAAGATCAGAT
** * * *
17670685 CAGATTGAGGGTTGCTGCAGCAGGATCAGCAGCACGTAGAGGGGGACTCGACCAATCCCCGGCTT
66 CAGACCGAGGGTTGCTGCAACAGAATCAGCAGCACGTAAAGGGGGACTCGACCAATCCCCGGCTT
*
17670750 ACGGATCCAACCCCTCTGGCCGACTGAA
131 ACGCATCCAACCCCTCTGGCCGACTGAA
*
17670778 CGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGG
1 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-TCTAAGATCA-G
* * * * *
17670842 GTTAGACCGAGGGTTGCTGCAACAGAATC-GACAGCACGTAAAGGGGGAC-CTGATCGATCCTCG
64 ATCAGACCGAGGGTTGCTGCAACAGAATCAG-CAGCACGTAAAGGGGGACTC-GACCAATCCCCG
* ** *
17670905 GCTTGCGCATCCCGCCCCTCTGG-CGACTGAG
127 GCTTACGCATCCAACCCCTCTGGCCGACTGAA
* **
17670936 CTCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
1 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-ATCTAAG
17670995 CATACGAAGT
Statistics
Matches: 185, Mismatches: 27, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
158 108 0.58
159 77 0.42
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (158 bp):
CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATCTAAGATCAGAT
CAGACCGAGGGTTGCTGCAACAGAATCAGCAGCACGTAAAGGGGGACTCGACCAATCCCCGGCTT
ACGCATCCAACCCCTCTGGCCGACTGAA
Found at i:17671005 original size:26 final size:26
Alignment explanation
Indices: 17670968--17671020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17670958 GTTGACTTAG
*
17670968 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
17670994 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17671020 G
1 G
17671021 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17672654 original size:26 final size:26
Alignment explanation
Indices: 17672625--17672677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17672615 GTTGACTTAG
*
17672625 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17672651 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17672677 G
1 G
17672678 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17673560 original size:26 final size:26
Alignment explanation
Indices: 17673523--17673575 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17673513 GTTGACTTAG
17673523 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
*
17673549 GCATAC-GTAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCAATCCCAGTCTAA
17673575 G
1 G
17673576 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:17676268 original size:26 final size:26
Alignment explanation
Indices: 17676232--17676284 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17676222 GTTGACTTTG
* *
17676232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17676258 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17676284 G
1 G
17676285 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17677552 original size:26 final size:26
Alignment explanation
Indices: 17677510--17677562 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17677500 GTTAACTTAG
* *
17677510 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTAATTCACAGTCTAA
* *
17677536 GCATACGGTGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCACAGTCTAA
17677562 G
1 G
17677563 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCACAGTCTAA
Found at i:17679802 original size:866 final size:867
Alignment explanation
Indices: 17677549--17686295 Score: 9673
Period size: 866 Copynumber: 10.0 Consensus size: 867
17677539 TACGGTGTTA
* ** * *
17677549 ATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGGTAGCACATGCTAGGG-TCGGGCATATG
1 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT-GGGCTCGGGCATGTG
* * * * * * * *
17677613 TTGGTGCTGCATTTCTCTTCGTC--AGC-GCA-C-T------ATCGCCGGAGAACTTGACTGGTG
65 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCG
*
17677667 GCATTGGGGTTCCGAAGATCGGGGGGTCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
130 GCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * **
17677731 GTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCTTACCCCCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
17677796 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
17677861 TTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGTTGAATTTTTTTGTGCATGCCAAAA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
17677926 AAATATACGAGGATCACGTGTAACAAGTTTGGGGTCAAAACTCCTTTCGAAAAAATTTTAAAAAA
389 AAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
17677991 TCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
453 TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
17678056 TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACACAA
518 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
17678121 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
583 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
** * * *
17678186 TCCAGCTGGCGTAGTGCCCGC--CCGCTCATTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTC
648 TCTGGCCGGCGTAGTGCCCGCATCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** * * * * * *
17678249 CCAGTGTAAGATTGGACCAGACCGAGGGTTACGGTAGCAAGATCGACAGCACGCGGTGGGGGGCA
713 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * ** * * * * *
17678314 AGACCGATTCCTAGCTTGCGCATCCCGGCCCTCTGGTCGGGTGAGCGCCCGTATTG-TCGTTTCG
778 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA-CGCTCGTTTCG
* *
17678378 TGGGTAGACTTAGGCATACGGAGTTC
842 TGGGTTGACTTAGGCATAAGGAGTTC
** * * * * *
17678404 ATTTTCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCACATACTGGGCTCGGGCATGTGC
1 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* ** * * * * *
17678469 TGGTGCCACATTTTTCTTCACCGAGGCACCATC-ACTGGAGCATCGTCGGAGAACCTGACCGACA
66 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGGCG
* * *
17678533 GCATTGGGGTTCCGACGATCGGGGGCGCC-GGGGGGTGTGCACACATGATGTGTGGTGGGTGCTG
130 GCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
17678597 GTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
17678662 AGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAAATGGGGACACTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
17678727 TTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGTGCATGCCAACA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
17678791 AAAATACAAGGATCACGTCTGCCAAGTTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTTAAAAA
389 AAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
17678856 TCTCGTATCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
453 TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
17678921 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCATGTAG
518 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
17678986 AAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCGACTG-TTGCGCATCCCGTCTC
583 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * **
17679050 TCTGGTCGGTGTAGTGCCCGC-TCC-CTCGTTTCGTCAAATGGCTTAGGCATACGGAGTTCATTC
648 TCTGGCCGGCGTAGTGCCCGCATCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* ** * * * *
17679113 TCAGTCTAAGATTAGACCAGACCGAGGGTTGTGATAGCAGGATCGGTAGCATGCAGAGGGGGACC
713 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * **
17679178 CGACCGATCCCCGGCTTGCACATCTCGCCCTTCTGGCCGGCTGAGTACCCGCACGCTCGTTTCGT
778 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
*
17679243 GGGTTGACTTCGGCATAAGGAGTTC
843 GGGTTGACTTAGGCATAAGGAGTTC
* * * *
17679268 ATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTCC
1 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * **
17679333 TGGTGCCGCATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCGCTGGAGAACCTGACTAGCGG
66 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGG
* * * * * *
17679398 CATTAGGCTTCCGATGATCGGGGAGGCCTAGGGGGTTGTACGCACATGATGTGCGATGGGTGCTG
131 CATTGGGGTTCCGACGATCGGGG-GGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
17679463 GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCCTTAAA
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAA
* * *
17679527 GAGCATTTGAGATTTTACAGGTTTGCGGCTAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTT
258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
17679592 TTTCAAATGGTCACAAAATCTTGTATC-CTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAA
323 TTTCAAATGGTCACAAAATCTTGTA-CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
17679656 CCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTAAAAAA
387 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* ** *
17679721 ATCTCGAACCGTAAAAAGTTTTAAAAATTGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
452 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * **
17679786 TTCACGTGAAGGCTTAAGGGACCATTGTCTGAGTTTACAAGCCATAAAAATGTCATTGGCACATA
517 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
17679851 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGTATCCTGTCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
17679916 CTCTGGTCGACGTAGTGCTCGACCGCCCATCCGTCCGTTCGTTTCATCGGTTGGATTAGGCATAC
647 CTCTGGCCGGCGTAGTG--C--CCG--CATCCG--C--TCGTTTCGTCAGTTGGCTTAGGCATAC
* * * * * *
17679981 GGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTCCAACAACAGGATCGGCAGCACGT
702 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGC
** * * * * *
17680046 AGAGGGGGACCCGGTCGAT-CCCGGTTTGCACATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCAT
767 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
17680110 GCTCGTTTCGTGGGTTGACTCAGGCATATGGAGTTC
832 GCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTC
* * * * * *
17680146 ATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATACGGGGCTCAGGCATGTGC
1 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * ** * *
17680211 TGGTGTCACATTTTTCATCACCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCAG
66 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGG
* * * * *
17680276 CATTGGGGTTTCGGCAATCGGGGGGGCCGGGGGGGTGTGCGCACATCATGTGTGATGGGTGCTGG
131 CATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
17680341 TGCTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACTCCCTTAAAGA
195 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
17680406 GCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACGCTTTTT
260 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
17680471 TCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAACAA
325 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * *
17680536 AAATACAAGGATCATGTCTAACAATTTTGGGGCCAACACCCCTTCCGAAAAAATTTTAAAAAATC
390 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
17680601 CCAAATCC-CAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGGGTCGTCTTGCCATGAAACTT
455 TCGAA-CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
17680665 CACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
519 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
*
17680730 AATCTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
584 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
17680795 CTGGCCGGCGTAGTGCCCGCCCGCCTGTCCGCTTGTTTCGTC-GATTGGCTTAGGCATACGGAGT
649 CTGGCCGGCGTAGT----GCCCG-C-ATCCGCTCGTTTCGTCAG-TTGGCTTAGGCATACGGAGT
* * * * **
17680859 TCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTG-TAGCAGCAGGATCACCAGCACGCAGAG
707 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCAGGATCGGCAGCACGCAGAG
* * ** * ** * *
17680923 AGGGACCCGATCGATCCCCGATTTGCGCATCCCGCCCCTGTAACCGGGTGAGTGCCCGCACGCTC
771 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
17680988 GTTTCATGGGTTGACTTAGGCATACGAGTTCGTTCCCAGTCTAAGCATAC
836 GTTTCGTGGGTTGACTTAGGCATA--AG---G-----AG--T-----T-C
* ** * * * *
17681038 GAAGTTCATTCCAAGTCTAAGATCGGATTGGACCGAAGGTTGCGGTAGCAAATGTTGGGCTCGGG
1 --A-TTC---CC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * *
17681103 CATGTGCTGGTGCCACATTTTTCTTTG-CTGGGGCACCAT--T------AT---CGGAGAACCTA
59 CATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
** * * *
17681156 ACCGGTAGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGCGGTGTGCGCACAAGATGTGCAA
123 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGG-GGTGTGCGCACATGATGTGCGA
*
17681221 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
185 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
17681286 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGG
250 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
17681351 GACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
315 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
17681416 ACGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGCGCCAAAA---C-TCC---------
380 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
17681468 -T------T-T-----C----------T--AAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCC
445 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
17681508 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTG
510 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
17681573 GCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
575 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
17681638 CCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATATG
640 CCCGTCTCTCTGGCCGGCGTAGTGC-C-CGCATCCGCTCGTTTCGTCAGTTGGCTTAGGCATACG
* * *
17681703 GAGTTCATTCCCAGTCTAAGATCGGACCCA-ACCGAGGGTTGTGGCAGCAGGATAGGCAGCACGC
703 GAGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGC
* ** * *
17681767 AGAGGGGGACCCGATCGATCCCTAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
767 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
17681832 GCTCGTTTCATGAGTTGACTTAGGCATACA-GAGTTC
832 GCTCGTTTCGTGGGTTGACTTAGGCATA-AGGAGTTC
* * * * *
17681868 ATTCCTAGTCTACGCATATGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGCTACGGT
1 ATTCCCAG--T---C-TA---AG----------ATC--AGA-C----CGGACCGAGGGTTGCGGC
* * * * * *
17681933 AGCACGTGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGAGGCACCATCGTCAGA
40 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * * * * * *
17681998 GCATCGCCGAAAAATCTAACCGACGACATTGGGGTTCTGGCGATCGGGGGGGTC-GGGGGGTGTG
105 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTG
* *
17682062 CGCACATGGTGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
169 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
17682127 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATT
234 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATT
* * *
17682192 AAAGTGTTTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGA
298 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * * *
17682257 GCTGAATTTTTCTATGCATGCTATA-AAAAATACAAGGATCACGTCCACCATGTTTCGGGCCAAA
363 GCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * **
17682321 AATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAG
427 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* * * * *
17682386 AAAACGAGTCATCTTGCCATGAAACTTCACGTGTAGGCTTAAGGGTCCATTATAAGAATTTACAA
492 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
17682451 GCCA-AAAAATTGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTAT
557 GCCATAAAAA-TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
17682515 CAATCCACGGCTTGCGCATCCCATCTCTTTGGCCGGCGTCGTGTTCGCCCGACCCGTCTGCCCGC
621 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT--AG-T-GCCCG---C--AT--CCGC
* * * * *
17682580 TCGTTTCATCATTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAAT-GGACTAGACTGAG
675 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCAGACCGAG
* * * ** * *
17682644 GGTTGCAACAGCAGGATAGGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCT
739 GGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* *
17682709 GCCCCTCTGGCTGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
804 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G----
17682774 TTCCCAGTCTAAGCATACGAAGTTC
856 ----CA---TAAG-----G-AGTTC
* * * *
17682799 ATTCCCATTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCACGTGC
1 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
*
17682864 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-C----CA------GAGAACCTGACCGGCAG
66 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGG
* * * * * *
17682918 CACTAGGGTTCTG-GGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGAGATGGGTGCTGGT
131 CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
17682982 ACTTGGGCCTTATATTGGCCCCCAAT-CCTCCTCAAACCTCGAGAACTCACACCCCCTTAAAGAG
196 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
17683046 CATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
261 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
17683111 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCTTGGCAACAAA
326 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* ** *
17683176 AATACAAGGATCACATCTACCAAGTTTGGGGTAAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
391 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
17683241 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
456 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
17683306 CGTGCAGGCCTAAGGGACCATTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
521 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * * *
17683370 TATAAAGATGTGCCTAAA-CCACCTGCCACCCTATCGATCCAC-ACTTGTGCATCCCGTCTCTCT
586 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
**
17683433 GGCCGGCGTAGTGCCCGGCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
651 GGCCGGCGTAGTGCCC-G-CATCCG----CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
* *** * * * * * * * *
17683498 TTCCCAGTCTAAGATCAGATTGGATCAAGGATTGTGGCAGCAAGATCGGTAGCACGTAGAGGGGG
710 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * *
17683563 ACCCGACCGATTCCCGGCTTACGCATCCCACCCCTCTGGTCGGATGAGCG-CCGCACGCTCGTTT
775 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
17683627 CATGGGTTGACTTAGGCATACGGAGTTC
840 CGTGGGTTGACTTAGGCATAAGGAGTTC
* * * *
17683655 ATTGCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACTGAACCAAGAGTTCCGAC
1 ATTCCCAGTCTAAG-AT-C--AG---A---CC-G-----GA-C---C-G-----AGGGTTGCGGC
* * * * *
17683720 AGCAAATGCTGGGCTCGGGCATATGCTGGTGTCGCATTTTTCTTCATGGGGGCACCATCGTCGGA
40 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
** * * ** *** * * * *
17683785 GCATCATCGGAGAACCTAACCGGCGGCATTGGGGTTCTGGTGATCGCATGGTCGGGGGGATATAC
105 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGC
* * * * *
17683850 GGACATGATGTGCAATGGGTGCTGGTACTCGACCCTTATATTGGCCCCCTATCCCACATCAAACC
170 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
17683915 TCGAGAACTCAGACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAA
235 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
17683980 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCCAGTTTTTAG
300 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAG
* * *
17684045 CTGAATTTTTTTGTGCAAGCCAA-TAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAC
364 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
17684109 TCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAA
429 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * * * *
17684173 AACGGGTCATCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAACTTACAAGC
494 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * *
17684238 CATAAGAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAAGCCACCTACCACCCTATTGA
559 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * ** *
17684303 TCCACGGCTTGCGCATCTCGTCTTTCTGGCCAACGTAGTGCCCGC--CCGCTCGTTTTGTCAGTT
624 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCATCCGCTCGTTTCGTCAGTT
* * * * *
17684366 GGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGTTCGGACCAGACTGAGGGTTGTGACAGTAGG
689 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGG
* * * ** * *
17684431 ATCGGCAGCACGCAGAAGGGGACCCGACCAATCCTCGGCTTATGCATCCCGCCCCTTTGGCCGAC
754 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
17684496 TGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
819 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTC
*
17684545 ATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGC
1 ATTCCCAGTCTAAG-AT-C--AG---------A--C----------C-GGACCGAGGGTTGCGGC
* * * **
17684610 AGCACATGCTGGGCTCGGGCATTTGCTAGTGCCGCATTTTTCTTCATCGGGGCATGATCGTCGGA
40 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * *
17684675 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGGCCAAGAGTGGTT
105 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC--GGGGGGCC--GGGGGGGT
*
17684740 GTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
166 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
17684805 ATCCTAGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCA
231 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
17684870 TTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTT
296 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * * *
17684935 TAGGTGAATTTTTTTGTGAATGCCAAAAAAAATACAAGGATAATGTCTACCAAGTTTGGGGTCAA
361 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * **
17685000 AACTCCTTCCAAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTTGAAAATCATGAAAAAT
426 AACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* *
17685064 AGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
490 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** *
17685129 AAGCCATAAAAATGGCATTGGCTTGCAGACATATGAAGATGTGCCTAAACCCA-CTAACCACCCT
555 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCT
* * *
17685193 ATCGATCCACGGCTTGCGTATCTCGTCTCTCTGGCCGGCGTAGTGCCCGC--CCGCTCATTTCGT
619 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCATCCGCTCGTTTCGT
* ** * ** * **
17685256 CGGTTGGCTTAGGCATACGGAGTTCATTCTTAGTGTAAGATCAAACTAGACCGAGGGTTGCGGTA
684 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACA
* * * * * **
17685321 GCAGGATCGGTAGCACGCAGAGGGGGACCAGATCAATTCCC-GCTTGCGC-T--CG--TTTCGTG
749 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC-TG
** * * * * * * *** *
17685380 GTTTGACTTAG-GCATACGGA-GTTC-ATTC-CCAG-T--C-TAAGCATACA-GAGTTC
813 G-CCGGCTGAGCGC--CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-AGGAGTTC
* * * *
17685430 ATTCCCA-TCTAAGATC-GAACCGGACTGAGGGTTGCGACAGCACATACTGGGCTTGGGCATGTG
1 ATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * ** *
17685493 CTGGTGCCACATTTCTCTTCGTCGGGGCACCA---T-----CAT---CGGAGAACAAGACCGACG
65 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCG
* * * * *
17685547 GCATT-GGGTTCCGGCTATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGA
130 GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
17685611 TACTTGGCCCTTATATT-GCCCCCTATTCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGA
195 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
17685675 GCATTTGAGATTTTACAAGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACATTTTTT
260 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
17685740 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAA
325 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
17685804 AAATACAAGGATCACTTCTTCCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATC
390 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * *
17685869 TCAAACCGTAAAAAGTTTTAAAAATCGTG-AAAATAGAAAACGAGTCGTCTTGCCATTAAACTTC
455 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
17685933 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
520 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
17685998 ATGTGAAGATGTGCCTAAACCCACATACCACCCAATC-ATCCACGGCTTGCGCATCCCGTCTCTC
585 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
17686062 TGGCCGGTGTAGTGCCCGCTTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
650 TGGCCGGCGTAGTGCCCGCAT--CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* ** * * * *
17686127 CCAGTTTAAGATCGGAGTAGA-TGAAGGGCTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
713 CCAGTCTAAGATCGGACCAGACCG-AGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGAC
* ** *
17686191 CCGGCCGATCCCCGGCTTGCGCATCCCATCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCG
777 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
17686256 TGGGTTGACTTAGGCATACA-GAGTTC
842 TGGGTTGACTTAGGCATA-AGGAGTTC
17686282 ATTCCCAGTCTAAG
1 ATTCCCAGTCTAAG
17686296 CATACGGAGT
Statistics
Matches: 6719, Mismatches: 869, Indels: 610
0.82 0.11 0.07
Matches are distributed among these distances:
823 2 0.00
824 1 0.00
825 1 0.00
827 3 0.00
828 2 0.00
829 2 0.00
830 1 0.00
831 1 0.00
832 2 0.00
836 1 0.00
838 45 0.01
839 125 0.02
840 99 0.01
841 146 0.02
842 149 0.02
843 9 0.00
844 11 0.00
845 3 0.00
846 23 0.00
847 29 0.00
848 165 0.02
849 70 0.01
850 5 0.00
851 2 0.00
852 199 0.03
853 6 0.00
854 4 0.00
855 68 0.01
856 17 0.00
857 134 0.02
858 188 0.03
859 3 0.00
860 38 0.01
861 1 0.00
862 5 0.00
863 3 0.00
864 336 0.05
865 286 0.04
866 539 0.08
867 99 0.01
868 1 0.00
869 2 0.00
870 1 0.00
871 4 0.00
872 5 0.00
873 94 0.01
874 66 0.01
875 1 0.00
876 8 0.00
877 428 0.06
878 233 0.03
879 104 0.02
881 2 0.00
882 86 0.01
883 125 0.02
884 13 0.00
885 21 0.00
886 6 0.00
887 3 0.00
888 67 0.01
889 153 0.02
890 467 0.07
891 242 0.04
892 85 0.01
893 137 0.02
894 399 0.06
895 523 0.08
896 235 0.03
897 32 0.00
898 5 0.00
899 79 0.01
900 6 0.00
901 1 0.00
904 3 0.00
905 222 0.03
906 3 0.00
909 1 0.00
910 3 0.00
911 2 0.00
912 3 0.00
913 1 0.00
914 1 0.00
922 4 0.00
924 1 0.00
925 4 0.00
926 1 0.00
929 1 0.00
930 1 0.00
931 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (867 bp):
ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGG
CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAGTGCCCGCATCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATAAGGAGTTC
Found at i:17681049 original size:26 final size:25
Alignment explanation
Indices: 17681007--17681058 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
17680997 GTTGACTTAG
* *
17681007 GCATACGAGTTCGTTCCCAGTCTAA
1 GCATACGAGTTCATTCCAAGTCTAA
17681032 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACG-AGTTCATTCCAAGTCTAA
17681058 G
1 G
17681059 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCAAGTCTAA
Found at i:17681427 original size:890 final size:889
Alignment explanation
Indices: 17680141--17686325 Score: 7361
Period size: 895 Copynumber: 7.0 Consensus size: 889
17680131 AGGCATATGG
* * * * *
17680141 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATACGGGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * ** *
17680206 TGTGCTGGTGTCACATTTTTCATCAC-CGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTTGCTCGGGGCACCAT--T------ATCG---GAGAACCTAAC
* * * **
17680270 CGGCAGCATTGGGGTTTCGGCAATCGGGGGGGCCGGGGGGGTGTGCGCACATCATGTGTGATGGG
120 CGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGG
* * *
17680335 TGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACTCCCT
185 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
17680400 TAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACG
250 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
17680465 CTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
315 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
17680530 GAACAAAAATACAAGGATCATGTCTAACAATTTTGGGGCCAACACCCCTTCCGAAAAAATTTTAA
380 CAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
17680595 AAAATCCCAAATCC-CAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGGGTCGTCTTGCCATG
445 AAAATCCCGAA-CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
17680659 AAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
509 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
17680724 TGCAGAAATCTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
574 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
17680789 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGTCCGCTTGTTTCGTC-GATTGGCTTAGGCATA
639 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCTCGTTTCGTCAG-TTGGCTTAGGCATA
* ** * * *
17680853 CGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGTAGCAGCAGGATCACCAGCACG
702 CGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCAGGATCAGCAGCACG
* * ** * ** * *
17680918 CAGAGAGGGACCCGATCGATCCCCGATTTGCGCATCCCGCCCCTGTAACCGGGTGAGTGCCCGCA
767 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
17680983 CGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCGTTCCCAGTCTAAGCATACGA
832 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* ** * * * *
17681040 AGTTCATTCCAAGTCTAAGATCGGATTGGACCGAAGGTTGCGGTAGCAAATGTTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
17681105 TGTGCTGGTGCCACATTTTTCTTTGCT-GGGGCACCATTATCGGAGAACCTAACCGGTAGCATTG
66 TGTGCTGGTGCCGCATTTTTCTTTGCTCGGGGCACCATTATCGGAGAACCTAACCGGCAGCATTG
** *
17681169 GGGTTCCAACGATCGGGGGGGCCGGGGGGCGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTAC
131 GGGTTCCGGCGATCGGGGGGGCC-GGGGG-GGTGTGCGCACATGATGTGCAATGGGTGCTGGTAC
*
17681234 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
194 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
17681299 TTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCA
259 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
17681364 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAA
324 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
17681429 TACAAGGATCACGTCTAGCAAGTTTGGCGCCAAAA---C-TCC---------TT------T----
389 TACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* *
17681471 -----C--------T--AAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACG
454 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
17681521 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACGTAGAAATA
519 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
17681586 TGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGG
584 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
17681651 CCGGCGTAGTGCTCG--C-CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC
649 CCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
*
17681713 CCAGTCTAAGATCGGACCCA-ACCGAGGGTTGTGGCAGCAGGAT-AGGCAGCACGCAGAGGGGGA
714 CCAGTCTAAGATCGGA-CTAGACCGAGGGTTGTGGCAGCAGGATCA-GCAGCACGCAGAGGGGGA
* ** * *
17681776 CCCGATCGATCCCTAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
777 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * * * *
17681841 ATGAGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTACGCATATGG
842 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * * * * * * *
17681889 AGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGCTACGGTAGCACGTGTTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
17681954 TGTGCTGGTGCCGTATTTTTCTTTG-TCGAGGCACCATCGTCAGAGCATCGCCGAAAAATCTAAC
66 TGTGCTGGTGCCGCATTTTTCTTTGCTCGGGGCACCAT--T------ATCG--G-AGAACCTAAC
* * * * *
17682018 CGAC-GACATTGGGGTTCTGGCGATCGGGGGGGTC-GGGGGGTGTGCGCACATGGTGTGCCATGG
120 CGGCAG-CATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGG
17682081 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
184 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
17682146 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATTAAAGTGTTTGAAATGAGGA
249 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA
* * *
17682211 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTCTATGCAT
313 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * * *
17682276 GCTATA-AAAAATACAAGGATCACGTCCACCATGTTTCGGGCCAAAAATCCTTTCGAAAAAATTT
378 GCCA-ACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
17682340 TAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
442 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
17682405 TGAAACTTCACGTGTAGGCTTAAGGGTCCATTATAAGAATTTACAAGCCA-AAAAATTGGCATTG
507 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTG
* *
17682469 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCAATCCACGGCTTGCGCAT
571 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
17682534 CCCATCTCTTTGGCCGGCGTCGTGTTCGCCCGACCCGTCTGCCCGCTCGTTTCATCATTTGGCTT
636 CCCGTCTCTCTGGCCGGCGT--AG-T-GCCCG-CCCG-CCGCCCGCTCGTTTCGTCAGTTGGCTT
* * ***
17682599 AGGCATACGGAGTTCATTCCCAATCTAAGAAT-GGACTAGACTGAGGGTTGCAACAGCAGGAT-A
695 AGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACTAGACCGAGGGTTGTGGCAGCAGGATCA
* ** * * *
17682662 GGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGA
759 -GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
17682727 GCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
823 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
17682792 GA
888 GA
* * * *
17682794 AGTTCATTCCCATTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *** * * * *
17682859 CGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGCCAGAGAACCTGACCGGCAGCACTA
66 TGTGCTGGTGCCGCATTTTTCTTTGCTCGGGGCACCATTATCGGAGAACCTAACCGGCAGCATTG
* *
17682923 GGGTTCTGG-GATC-GGGGGGCCGGGGGGGTGTGCACACATGATGTG-AGATGGGTGCTGGTACT
131 GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCA-ATGGGTGCTGGTACT
* * *
17682985 TGGGCCTTATATTGGCCCCCAAT-CCTCCTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
195 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
17683049 TTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
260 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
17683114 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCTTGGCAACAAAAAT
325 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * **
17683179 ACAAGGATCACATCTACCAAGTTTGGGGTAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
390 ACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
*
17683244 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
455 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
17683309 GCAGGCCTAAGGGACCATTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
520 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * * *
17683373 AAAGATGTGCCTAAA-CCACCTGCCACCCTATCGATCCAC-ACTTGTGCATCCCGTCTCTCTGGC
585 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* *
17683436 CGGCGTAGTGCCCGGCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
650 CGGCGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * * *
17683501 CCAGTCTAAGATCAGATTGGATCAAGGATTGTGGCAGCAAGATCGGTAGCACGTAGAGGGGGACC
714 CCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGGACC
* * * * *
17683566 CGACCGATTCCCGGCTTACGCATCCCACCCCTCTGGTCGGATGAGCG-CCGCACGCTCGTTTCAT
779 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
*
17683630 GGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCATACGA
844 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * * * * * * *
17683676 AGTTCATTCCCAGTCTAAGATCGAACTGAACCAAGAGTTCCGACAGCAAATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
17683741 TATGCTGGTGTCGCATTTTTC-TT-CATGGGGGCACCATCGTCGGAGCATCATCGGAGAACCTAA
66 TGTGCTGGTGCCGCATTTTTCTTTGC-TCGGGGCACCA---T-------T-ATCGGAGAACCTAA
* * * *** * * * * *
17683804 CCGGCGGCATTGGGGTTCTGGTGATC-GCATGGTCGGGGGGATATACGGACATGATGTGCAATGG
119 CCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGG
* * * *
17683868 GTGCTGGTACTCGACCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCAGACCCCC
184 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
17683933 TTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
249 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
17683998 ACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCAA
314 ACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
17684063 GCCAA-TAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTT
378 GCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
17684126 AAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCGT
443 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
17684191 GAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAACTTACAAGCCATAAGAATGGCATTGGC
508 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
17684256 ACACAGAAATATAAAGATGTGCCTAAAGCCACCTACCACCCTATTGATCCACGGCTTGCGCATCT
573 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** *
17684321 CGTCTTTCTGGCCAACGTAGT----G--C-CCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATAC
638 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
* * * * * * *
17684379 GGTGTTCATTCCCAGTCTAAGTTCGGACCAGACTGAGGGTTGTGACAGTAGGATCGGCAGCACGC
703 GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCAGGATCAGCAGCACGC
* * * ** * * *
17684444 AGAAGGGGACCCGACCAATCCTCGGCTTATGCATCCCGCCCCTTTGGCCGACTGAGCGCCCGTAC
768 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
17684509 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGG
833 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* *
17684566 AGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * ** *
17684631 TTTGCTAGTGCCGCATTTTTC-TT-CATCGGGGCATGATCGTCGGAGCATCGCCGGAGAACCTGA
66 TGTGCTGGTGCCGCATTTTTCTTTGC-TCGGGGC---A-C--C--ATTAT---CGGAGAACCTAA
* * * * * *
17684694 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGGCCAAGAGTGGTTGTACGCACATGATGTGCGA
119 CCGGCAGCATTGGGGTTCCGGCGATC-GGGGGGGCC--GGGGGGGTGTGCGCACATGATGTGCAA
* *
17684759 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTAGAGAACTCACACC
181 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
17684824 CCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
246 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
17684889 AACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGA
311 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * *
17684954 ATGCCAAAAAAAATACAAGGATAATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATT
376 ATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** *
17685019 TTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
441 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
17685084 AAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
506 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * *
17685149 GCTTGCAGACATATGAAGATGTGCCTAAACCCA-CTAACCACCCTATCGATCCACGGCTTGCGTA
571 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCA
* * *
17685213 TCTCGTCTCTCTGGCCGGCGTAGT----G--C-CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
635 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
** * ** * * * *
17685271 TACGGAGTTCATTCTTAGTGTAAGATCAAACTAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCA
700 TACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCAGGATCAGCAGCA
* *
17685336 CGCAGAGGGGGA-CC-A--GA---------T-C-AAT--------TC---CC-GCT-------TG
765 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
17685367 --CGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-A
830 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * * * *
17685424 GAGTTCATTCCCA-TCTAAGATCGAACCGGACTGAGGGTTGCGACAGCACATACTGGGCTTGGGC
1 -AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * * *
17685488 ATGTGCTGGTGCCACATTTCTCTTCG-TCGGGGCACCATCATCGGAGAA-CAAGACCGACGGCAT
65 ATGTGCTGGTGCCGCATTTTTCTTTGCTCGGGGCACCATTATCGGAGAACCTA-ACCGGCAGCAT
* * ** *
17685551 T-GGGTTCCGGCTATC-GGGGGGCCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGATAC
129 TGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAC
* * *
17685614 TTGGCCCTTATATT-GCCCCCTATTCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCA
194 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
17685678 TTTGAGATTTTACAAGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCA
259 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
17685743 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAA
324 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* ** * * *
17685807 TACAAGGATCACTTCTTCCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCTCA
389 TACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * * * *
17685872 AACCGTAAAAAGTTTTAAAAATCGTG-AAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACA
454 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
17685936 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATG
519 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
17686001 TGAAGATGTGCCTAAACCCACATACCACCCAATC-ATCCACGGCTTGCGCATCCCGTCTCTCTGG
584 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* **
17686065 CCGGTGTAGTGCCCG--C-TTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
649 CCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
17686127 CCAGTTTAAGATCGGAGTAGA-TGAAGGGCTGCGGCAGCAGGATC-GACAGCACGCAGAGGGGGA
714 CCAGTCTAAGATCGGACTAGACCG-AGGGTTGTGGCAGCAGGATCAG-CAGCACGCAGAGGGGGA
* ** *
17686190 CCCGGCCGATCCCCGGCTTGCGCATCCCATCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC
777 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
17686255 GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGG
842 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
*
17686303 AGTTCATTCCTAGTCTAAGATCG
1 AGTTCATTCCCAGTCTAAGATCG
17686326 TCGGAGAACC
Statistics
Matches: 4565, Mismatches: 554, Indels: 354
0.83 0.10 0.06
Matches are distributed among these distances:
838 37 0.01
839 125 0.03
840 99 0.02
841 146 0.03
842 140 0.03
843 2 0.00
844 8 0.00
846 16 0.00
847 19 0.00
848 164 0.04
849 115 0.03
850 5 0.00
851 1 0.00
852 182 0.04
854 2 0.00
855 2 0.00
856 1 0.00
857 133 0.03
858 191 0.04
859 68 0.01
860 34 0.01
861 2 0.00
862 3 0.00
865 2 0.00
868 4 0.00
869 4 0.00
871 3 0.00
872 1 0.00
876 1 0.00
877 3 0.00
878 65 0.01
879 10 0.00
880 2 0.00
881 1 0.00
882 144 0.03
883 127 0.03
884 5 0.00
885 2 0.00
886 5 0.00
887 3 0.00
888 65 0.01
889 157 0.03
890 471 0.10
891 234 0.05
892 81 0.02
893 138 0.03
894 395 0.09
895 511 0.11
896 232 0.05
897 29 0.01
898 2 0.00
899 88 0.02
900 4 0.00
903 1 0.00
904 2 0.00
905 276 0.06
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTTGCTCGGGGCACCATTATCGGAGAACCTAACCGGCAGCATTG
GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCG
ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
Found at i:17682797 original size:26 final size:26
Alignment explanation
Indices: 17682760--17682812 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17682750 GTTGACTTAG
*
17682760 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17682786 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17682812 G
1 G
17682813 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17683672 original size:26 final size:26
Alignment explanation
Indices: 17683642--17683694 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17683632 GTTGACTTAG
* *
17683642 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17683668 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17683694 G
1 G
17683695 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17684562 original size:26 final size:26
Alignment explanation
Indices: 17684532--17684584 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17684522 GTTGACTTAG
*
17684532 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17684558 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17684584 G
1 G
17684585 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17685427 original size:26 final size:25
Alignment explanation
Indices: 17685391--17685442 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17685381 TTTGACTTAG
*
17685391 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCA-TCTAA
17685417 GCATACAGAGTTCATTCCCATCTAA
1 GCATACAGAGTTCATTCCCATCTAA
17685442 G
1 G
17685443 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCCATCTAA
Found at i:17686305 original size:26 final size:26
Alignment explanation
Indices: 17686269--17686321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17686259 GTTGACTTAG
17686269 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
17686295 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17686321 G
1 G
17686322 ATCGTCGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17688035 original size:16 final size:16
Alignment explanation
Indices: 17688016--17688082 Score: 59
Period size: 16 Copynumber: 4.1 Consensus size: 16
17688006 AAGAAAACAG
17688016 AATAATAAAAAAAATA
1 AATAATAAAAAAAATA
*
17688032 AATAAAAATAAAAAAT-
1 AATAATAA-AAAAAATA
17688048 AA-AATAAAGTAAAAATAA
1 AATAATAAA--AAAAAT-A
*
17688066 AATAA-AAATAAAATA
1 AATAATAAAAAAAATA
17688081 AA
1 AA
17688083 GATAAAAGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 13
0.72 0.05 0.22
Matches are distributed among these distances:
14 1 0.02
15 7 0.17
16 20 0.48
17 7 0.17
18 5 0.12
19 2 0.05
ACGTcount: A:0.81, C:0.00, G:0.01, T:0.18
Consensus pattern (16 bp):
AATAATAAAAAAAATA
Found at i:17688044 original size:17 final size:17
Alignment explanation
Indices: 17688024--17688078 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 17
17688014 AGAATAATAA
17688024 AAAAAATAAATAAAAAT
1 AAAAAATAAATAAAAAT
*
17688041 AAAAAATAAA-ATAAAGT
1 AAAAAATAAATA-AAAAT
17688058 -AAAAATAAAATAAAAAT
1 AAAAAAT-AAATAAAAAT
17688075 AAAA
1 AAAA
17688079 TAAAGATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
16 7 0.22
17 21 0.66
18 4 0.12
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (17 bp):
AAAAAATAAATAAAAAT
Found at i:17688064 original size:11 final size:11
Alignment explanation
Indices: 17688025--17688089 Score: 87
Period size: 11 Copynumber: 5.9 Consensus size: 11
17688015 GAATAATAAA
17688025 AAAAAT-AAAT
1 AAAAATAAAAT
*
17688035 AAAAATAAAAA
1 AAAAATAAAAT
*
17688046 ATAAAATAAAGT
1 A-AAAATAAAAT
17688058 AAAAATAAAAT
1 AAAAATAAAAT
17688069 AAAAATAAAAT
1 AAAAATAAAAT
*
17688080 AAAGATAAAA
1 AAAAATAAAA
17688090 GAATATTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
10 6 0.12
11 33 0.69
12 9 0.19
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:17688089 original size:16 final size:16
Alignment explanation
Indices: 17688025--17688089 Score: 71
Period size: 16 Copynumber: 3.9 Consensus size: 16
17688015 GAATAATAAA
17688025 AAAAAT-AAATAAAAAT
1 AAAAATAAAAT-AAAAT
*
17688041 AAAAAATAAAATAAAGT
1 -AAAAATAAAATAAAAT
17688058 AAAAATAAAATAAAA-
1 AAAAATAAAATAAAAT
17688073 ATAAAATAAAGATAAAA
1 A-AAAATAAA-ATAAAA
17688090 GAATATTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.02
16 22 0.51
17 16 0.37
18 4 0.09
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (16 bp):
AAAAATAAAATAAAAT
Found at i:17689320 original size:159 final size:159
Alignment explanation
Indices: 17689095--17689444 Score: 556
Period size: 159 Copynumber: 2.2 Consensus size: 159
17689085 CGCCGGTCGG
* *** **
17689095 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTACGGTAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGACAGCAAGAT
*
17689160 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
66 CGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
17689225 AGCACCCGCACGCTTATTTTGTGGGTTGA
131 AGCACCCGCACGCTCATTTCGTGGGCTGA
*
17689254 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGACAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGACAGCAAGAT
* * *
17689319 CGACAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTTTGGTCGGCTG
66 CGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
17689384 AGCGCCCGCACGCTCATTTCGTGGGCTGA
131 AGCACCCGCACGCTCATTTCGTGGGCTGA
*
17689413 CTTAGGCATATGGAGTTCATTCCCAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17689445 CATACGAAGT
Statistics
Matches: 175, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
159 175 1.00
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGACAGCAAGAT
CGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCACCCGCACGCTCATTTCGTGGGCTGA
Found at i:17690358 original size:26 final size:27
Alignment explanation
Indices: 17690311--17690364 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
17690301 GTTGACTTAG
17690311 GCATACAGAGTTTCATTCCCAGTCTAA
1 GCATACAGAGTTTCATTCCCAGTCTAA
*
17690338 GCATACGGAG-TTCATTCCCAGTCTAA
1 GCATACAGAGTTTCATTCCCAGTCTAA
17690364 G
1 G
17690365 ATCGGACTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATACAGAGTTTCATTCCCAGTCTAA
Found at i:17690985 original size:897 final size:892
Alignment explanation
Indices: 17689254--17690985 Score: 2889
Period size: 897 Copynumber: 1.9 Consensus size: 892
17689244 TGTGGGTTGA
*
17689254 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGACAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGACAGCAGGAT
* * ** * *
17689319 CGACAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTTTGGTCGGCTG
66 CGACAGCACGCAGAGGGGGACCCGACCGAACCCCAGCTTGCGCATCCCACCCCTCTGGTCGGCTG
**
17689384 AGCGCCCGCACGCTCATTTCGTGGGCTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATA
131 AGCGCCCGCACGCTCATTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
* *
17689449 CGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
196 CGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGA
* *
17689514 GCATGTGCTGGTGCCGCATTTTTTTTTGTCGCACCATCGCCGGAACATCGTCGGAGAACCTGACC
261 GCATGTGCTGGTGCCACATTTTTTTTCGTCGCACCATCGCCGGAACATCGTCGGAGAACCTGACC
* * *
17689579 AGCGGCATTGGGGTTTCGGCGATCGGGGCGGTCGGGGGGGGACTGTGCGCACATGATGTGAATGG
326 AGCGGCATTGGGGTTCCGGCGATCGGGGCGGCCGGGGGGGGA-TGTGCACACATGATGTGAATGG
* *
17689644 TGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCTCATCAAACCTCGAGAACTCACACCCCCTT
390 TGCCGATACTTGGCCCTTATATTGGCCCCTTATCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
17689709 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC
455 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACAC
*
17689774 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGTATTTTTTTTGGCATGCC
520 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGGCATGCC
* *
17689839 AATAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAA
585 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAAATCCTTTCGAAAAAATTTTAAA
17689904 AAACCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
650 AAACCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
17689969 ACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCACA
715 ACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCACA
17690034 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
780 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
17690099 TTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTCG
845 TTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTCG
* ** * *
17690147 CTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCAGACC-AGACTGAGGGTTAC-AGTAGTAGG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCAAGGGTTACGA-CAGCAGG
* * *
17690210 ATCGGCAGCACGCAGAGGGGGACTCGACCGAACCCCAGCTTGCGCATCCCACCCCTCTGGTCGGT
64 ATCGACAGCACGCAGAGGGGGACCCGACCGAACCCCAGCTTGCGCATCCCACCCCTCTGGTCGGC
* *
17690275 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTCATTCCCAGTCTAAGC
129 TGAGCGCCCGCACGCTCATTTCGTGGGCTGACTTAGGCATACAGAG-TTCATTCCCAGTCTAAGC
* * * * *
17690340 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGTACCAAGGGTTGTGGCAGCACATGCTGGG-T
193 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCT
* * *
17690404 CGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGTGGCACCATCGCCGGAGCATCGTTGGAGAAC
258 CGAGCATGTGCTGGTGCCACATTTTT-TT--TCGTCGCACCATCGCCGGAACATCGTCGGAGAAC
* * * *
17690469 CTGGCC-GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGTGGG-TGTGCACACATGTTGTG
320 CTGACCAGCGGCATTGGGGTTCCGGCGATCGGGGCGGCCGGGGGGGGATGTGCACACATGATGTG
*
17690532 CGATGGGTGCCGATACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
385 -AAT-GGTGCCGATACTTGGCCCTTATATTGGCCCCTTAT-CCTCATCAAACCTCGAGAACTCAC
17690597 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAAT
447 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAAT
17690662 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
512 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* *
17690727 TTGTATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAAATCCTTTCGAAAA
576 TGGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAAATCCTTTCGAAAA
17690792 AATTTTAAAAAACCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
641 AATTTTAAAAAACCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
* *
17690857 TGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTATATGCCATAAAAATGGT
706 TGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGC
17690922 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
771 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
17690986 GGATTTTACA
Statistics
Matches: 780, Mismatches: 49, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
892 2 0.00
893 191 0.24
894 79 0.10
895 69 0.09
896 179 0.23
897 260 0.33
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGACAGCAGGAT
CGACAGCACGCAGAGGGGGACCCGACCGAACCCCAGCTTGCGCATCCCACCCCTCTGGTCGGCTG
AGCGCCCGCACGCTCATTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
CGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGA
GCATGTGCTGGTGCCACATTTTTTTTCGTCGCACCATCGCCGGAACATCGTCGGAGAACCTGACC
AGCGGCATTGGGGTTCCGGCGATCGGGGCGGCCGGGGGGGGATGTGCACACATGATGTGAATGGT
GCCGATACTTGGCCCTTATATTGGCCCCTTATCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGGCATGCCA
ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAAATCCTTTCGAAAAAATTTTAAAA
AACCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCACAC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTT
TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTCG
Found at i:17691296 original size:368 final size:369
Alignment explanation
Indices: 17690618--17691353 Score: 1233
Period size: 368 Copynumber: 2.0 Consensus size: 369
17690608 GAGCATTTGA
17690618 GATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
* *
17690683 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGTATGCCAACAAAAATACA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACA
* *
17690748 AGGATCATGTCTACCAAGTTTGGGACCAAAAATCCTTTCGAAAAAATTTTAAAAAACCCCGAACC
131 AGGATCACGTCAACCAAGTTTGGGACCAAAAATCCTTTCGAAAAAATTTTAAAAAACCCCGAACC
* * *
17690813 GTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAC
196 GTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCATCTTGCCATGAAACTTCACGTGAA
* * *
17690878 GGCTTAAGGGACCATTGTATGAATTTATATGCCATAAAAATGGTATTGGCACACAGAAATATGAA
261 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAAAAATATGAA
17690943 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGG
326 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGG
* * **
17690987 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
*
17691052 TCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACA
* * *
17691116 AGGATCACGTCAACCAAGTTTGGGGCCAAAAATCC-TTCTGAAAAAATTTTAAGAAATCCCGAAC
131 AGGATCACGTCAACCAAGTTTGGGACCAAAAATCCTTTC-GAAAAAATTTTAAAAAACCCCGAAC
* *
17691180 TGTAAAAAGTTTCTAAAATCATGAAAAATAAAAAACAAGTCATCTTGCCATGAAACTTCACGTGA
195 CGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCATCTTGCCATGAAACTTCACGTGA
**
17691245 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAAAAATATGA
260 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAAAAATATGA
* *
17691310 AGATGTGCCTAAATCCACCTACCACCCTATCGATCCATGGCTTG
325 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
17691354 CGCATCCCGT
Statistics
Matches: 342, Mismatches: 24, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
367 3 0.01
368 243 0.71
369 96 0.28
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (369 bp):
GATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCAACCAAGTTTGGGACCAAAAATCCTTTCGAAAAAATTTTAAAAAACCCCGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCATCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAAAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGG
Found at i:17692518 original size:26 final size:26
Alignment explanation
Indices: 17692482--17692533 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17692472 TGACTTAGGC
17692482 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
17692508 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
17692534 TCAAACCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:17693951 original size:898 final size:895
Alignment explanation
Indices: 17690987--17709814 Score: 8864
Period size: 898 Copynumber: 20.7 Consensus size: 895
17690977 CACGGCTTGG
* *
17690987 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
17691052 TCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * *
17691117 GGATCACGTCAACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAGAAATCCCGAACTG
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * *
17691182 TAAAAAGTTTCTAAAATCATGAAAAATAAAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAG
196 TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
17691247 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAAAAATATGAAG
261 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
17691312 ATGTGCCTAAATCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTTGCCGGC
326 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
17691377 GTAGTGTCTGTTAGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
391 GTAGTG-C--CT-GCCCG-CCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * ** * *
17691442 CCAGTATATGATCAGACCAAACCGAGGGTTGTGATAGTAGGATCGACAGCACGTAGAGGGGGACC
450 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACC
** * * * * * * * * *
17691507 CGACCAATCCCCGACTTGCGCATCCCGCCCCTCTTGCCGGTTGAGCGCTCGCATGCCCATTTTGT
515 CGACTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * * ** ** *
17691572 GGGTTGACATAGGCATATGGAGTTCATTCCCAATCTATTCATACGGAGTTCATTTGCAGTCCAAG
580 GGGTTGACTTAGGCATA-CGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
17691637 ATC-AGACCAGACTAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATCTGCTGGTGTCGCATTT
644 ATCGA-ACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTT
* * ** *
17691701 TTTTTCGTCGGGGTACCATCAACGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCG
708 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
** ** * **
17691766 GTGA-TCAGGGGGCCGGAGGGGTGGTGCGCACATGATGTGCGATGGGTGCTGGTAGC-TGGCCCT
773 ACGATTGGGGGGGCCGG-GGGGT-GTGCGCACATGATGTGTGATGGGTGCTCATA-CTTGGCCCT
* * *
17691829 TATATTGGCCCCCT-TCCCTCATCAATCCTCGGGAACTCTCACCCCCTTAAAGAGCATTTGA
835 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGA
*
17691890 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC-TTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * *
17691954 TCAAAAAATCTTGTACACTTCCAAGTTTTTAGCTGAATGTTTTTGTGGCATTCCAACAAAAATAC
66 TCACAAAATCTTGTACACTT-CGAGTTTTTAGCTGAATTTTTTTGT-GCATGCCAAAAAAAATAC
* *
17692019 AAAGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
129 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * *
17692084 TGTAAAAAGTTTCAAAAATTATGAAAAGTAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
194 CGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
17692149 AGGCTTAAGCGG-CCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGTAGGCAGAAATATT
259 AGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* *
17692213 AAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCC
323 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
17692278 GGTGTAGTGCC--CGC-CCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
388 GGCGTAGTGCCTGCCCGCCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * *
17692340 AGTCTAAGATCAGACCAGACCGAGGGTTGCTG-TAGCTGGATCGACAGCACGCATAGGGGGACCT
452 AGTCTAAGATCAGACCGGACCGAGGGTTGC-GATAGCAGGATCGACAGCACGTAGAGGGGGACCC
* * * **
17692404 GGCCGATCCCTGGCTTGCGCAT-CCAGCCCCTCTGGTTGGCTGAGCGCCCGCACGCTCGTTTCGT
516 GACTGATCCCCGGCTTGCGCATCCCA-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
*
17692468 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAG
580 GGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * * *
17692533 ATCAAACCAAACTGAAGGTTACGACAGCACATGCTGGGGT-CGAGCATGTGCTGGTGCCGTATTT
644 ATCGAACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCG-GCATGTGCTGGTGCCGCATTT
* * * * *
17692597 TCCTTCGTCGGGGCACCATTGCCGGAGCATCGTCGGAGAACTTGACCTGCGGCATTGGGGTTCCG
708 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * ** *
17692662 ACGATCGGGGGGGCCGGCGGGGGTGTGCACACATGATGTGCAATGAGTGCTGC-TACTTGGCCCT
773 ACGATTGGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGTGATGGGTGCT-CATACTTGGCCCT
* *
17692726 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAGGAGCATTTGA
835 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGA
*
17692788 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
17692853 TCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAGAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * *
17692918 GGATCACGTCAACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAGTTTAAAAAATCCCAAACCG
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * *
17692983 CAAAAGGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
196 TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
17693048 GCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGAAATATGAAT
261 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* ** *
17693113 ATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTTACCGAC
326 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * *
17693178 GTAGTGCCTGCCCACCTGCCCGGTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTGATTTCTAG
391 GTAGTGCCTGCCCGCC-GCCC-GTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * * *
17693243 TCTAAGATTGGATCGAACCGAGGGTTACGATAGCAGGATCGACAGCACGTAGAGGGGGACCCGAC
454 TCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACCCGAC
* * * *
17693308 TGATCCCCGGCTTGTGCATCCCACCCCTCTTGCCGGTTGAGCGCTCGCACGCTCGTTTCGTGGGT
519 TGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * **
17693373 TGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACGAAGTTCCTTTCCAGAGTAAGATCG
584 TGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
17693438 AACCGGACTGAGGGTTACGGCAGCACATACTGGGCTCCGGCATGTCCTGGTGCTGCATTTTTCTT
648 AACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTT
* * **
17693503 CGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGGTGAT
713 CGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * * * * * *
17693568 TGGGGGGGCCGGGGGGCGTGCGAACTTGATGTATGATTGGTACTCATAGTTGGCCCTTATATTGG
778 TGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTCATACTTGGCCCTTATATTGG
* * *
17693633 CCCCCTATCCCTCATCAATCCTCGACAACTCACGCCCCTTAAAGAGCATTTGA
843 CCCCCTATCCCTCATCAAACCTCGAGAACTCACCCCCCTTAAAGAGCATTTGA
*
17693686 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
17693751 TCAAAAAATGTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAAAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * **
17693816 GGATCACATCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCG
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
17693881 TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
196 TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * **
17693946 GCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATAGCATTGGCACACAGAAATATGAAG
261 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
17694011 ATGTGCCTAAACCCACCTACCACTCTATCGATCCACGACTTGCGAATCCCGTCTCTCTGGCCGAC
326 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
17694076 GTAGTGCCCGCCCGCCTG--C-TCGTTCCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCA-T
391 GTAGTGCCTGCCCGCC-GCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* *
17694137 CTATA-ATCAGATCGGATCGAGGGTTGCTGCA-A-CAGGATC-AGCAGCACGTAGAGGGGGACCC
455 CTA-AGATCAGACCGGACCGAGGGTTGC-G-ATAGCAGGATCGA-CAGCACGTAGAGGGGGACCC
** * * * * ** * ** *
17694198 GACCAATCCCCGGCTTACGGATCCAACCCCTCTGGTCGATTGAACGCCCGCATACTCGTTTCATG
516 GACTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* ** *
17694263 GGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAG-ATA-GG-GTT-AGACCGAGGGTTGCT
581 GGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA--G-T-CT
* * * ** * * * * *
17694324 GCAACAGGATCG-ACAGCACATAAAGGGGGACCTG-ATCAATCCTCGGCTTGCGCATCCCGCCCC
641 ---A-A-GATCGAACCGGAC-T-GAGGGTTA-CGGCAGC-A-CAT--GC-TGGGC-T-CCG--GC
* * * *** * * * *
17694387 TCTGGCGACTGAGCTCCCGCA-CACTCGTTTCAT-GGGTTG-ACTTAGGCATACGGAGTTCAT--
689 -AT-GTG-CTG-G-TGCCGCATTTTTC--TTCGTCGGG--GCAC-CA-TCGT-CGGAG--CATCG
** * * ** * *** * * ** * * *
17694447 TC--CCAATCTAAGCATACGAAGTTCATTCCCAG-T-CTAAGATTGGACCGGACCGAGGGTTGTG
740 TCGGAGAACCT--G-A-CCGGCG-GCATT-GGGGTTCCGACGATTGG-GGGGGCCGGGGGGTGTG
* * * ** * * * * ***
17694508 ACAGCACATGCTG-G-GCTCGG-G--CATGTGTTGGTGCAACATTTTTCATCGTCGGGGC-A-CC
798 -C-GCACATGATGTGTGATGGGTGCTCAT-ACTT-G-GC--C-CTTAT-ATTGGC-CCCCTATCC
* * * * ***
17694566 ATCATCGGAGTATCGTCGGAGAACCTGA-----C-TGGTG-GCA-TTG-
853 CTCATC--A--AACCTC-GAGAA-CTCACCCCCCTTAAAGAGCATTTGA
** * * * ** ** ** ** * * * * * *
17694606 G-GGTT-CCGG--CGAT-CGGGGGGCC---GGAG-GGGTG---TGCGCACA-TGATGTGC-GATG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAAT-
* * ** ** * * * *
17694657 GGT-------GCTGGT--ACTT-G-GCCCTTTATTTGAATTCTTTTGTGCATTCCTACAAAAATA
64 GGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * * * *
17694711 CATGGATCACATCTACCAACTTTGGGGCCAAAACTCCTTCCGAAATAATTTTAAAAAATCTCGAA
128 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
*
17694776 CCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
193 CCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * *
17694841 AAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATA
258 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* *
17694906 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTGTCTCTCTGGCC
323 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
17694971 --AGTA-T-ACTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
388 GGCGTAGTGCCTGCCCGCC-GCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * ** * *
17695032 AAGTCTAACATCGGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
451 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACCC
* * ** * *
17695097 G-CTTGATCCCCGGATTG-GCGTCCTGCCCCAT-TGGCCGGCTGAGCACCCGCACACTCGTTTCG
516 GAC-TGATCCCCGGCTTGCGCATCCCACCCC-TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * *
17695159 TGGGTAGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCATTCCAA
579 TGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
17695224 GATCGGACCGGACTGAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTCCTGGTGCCACATTT
643 GATCGAACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTT
* * * * *
17695289 TTCTTCGTTGGGGCACCATCGTAGGAGCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCCG
708 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * * **
17695354 GCAATTGGGGGGGCCTGGGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTT
773 ACGATTGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTCATACTTGGCCCTT
* * * *
17695419 ATATTGGCCCCTTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAACAACATTTGA
836 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGA
* *
17695480 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * *
17695545 TCACTAAAT-TTGTACACTTTGAGTTTTTAGCTGAA-TGTTTTATGCATTCCAAAAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* *
17695608 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAGCCG
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* *
17695673 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
196 TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
17695738 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
261 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
*
17695803 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGT
326 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
17695868 ATAGTG-CT-CGC-CCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCGAGT
391 GTAGTGCCTGCCCGCCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
** * * * *
17695930 CTAAGATCAGACCGGACCGAGGGTTATGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGA-T
455 CTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACCCGACT
** * *
17695994 CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCAG-CCGCACGCTCGTTCCGTGGG
520 -GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGG
17696058 TTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
583 TTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * ** *
17696123 GGACTAGACCGAGGGTTATGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGTATTTTTCT
647 GAACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * * *
17696188 TCGCCGAGGCACCATCG-CAGGAGCATCGCCGGAGAACTTGACCGACGGCATTCGGGTTTCGACG
712 TCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * *
17696252 ATCGGGGGGGCCGAGGGGATGTGCGCACATGATGTGTGATGGGTGCTGC-TACTTGGCCCTCATA
776 ATTGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGTGATGGGTGCT-CATACTTGGCCCTTATA
* * * *
17696316 TTGG-CCCCTAT-CCTCATGAAACCTCAAGAACTCATACCCACTTAAAGAGCATTTGA
839 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-CCCCCCTTAAAGAGCATTTGA
* * * * *
17696372 GATTTTACAAGTTTACTGCCAATAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
17696437 TCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
** * * *
17696502 GGATCACGTCTACCAAGTTTTGGGGCCAATGCTCCTTCCGAAAAAGTTTTGAAAAATCCCGAAAC
131 GGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* * * * * *
17696567 GCAAAAAGTTTTGAAAATCGTGAAAAAAAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAA
195 GTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
17696632 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
260 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * *
17696697 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTTTCTGGACGG
325 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * * *
17696762 CGTAGTGCCCGTGCCCACC-CAC-TTGTTTCGTTGGTTGGCTTAGGTATACGAAGTTCATTCCCA
390 CGTAGTG-CC-TGCCCGCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * ** * *
17696825 GTCAAAGATCAGACCGGACTGAGGGTTGTGCTGGCAGGATTGGTAGCACATAGAGGGGGACTCG-
453 GTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACCCGA
* * * *
17696889 GTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTAG
518 CT-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
*
17696954 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGAT
582 GTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * ** * *
17697019 CGGACCGGACCGGGGGTTGCGATAACACATGCTGGGCT-CGAGCATGTGCTGGTGCCACATTTTT
646 CGAACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCG-GCATGTGCTGGTGCCGCATTTTT
* * * * *
17697083 CTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACTTGACCGACGGCATTGGGGTTCCAAA
710 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * * * * * *
17697148 GATCGGGGGGGCCGAAGGGGTGTGCGCCCTTGTTGTATGATTGGTGCT-AGTACTTGGCCCTTAT
775 GATTGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGTGATGGGTGCTCA-TACTTGGCCCTTAT
* * *
17697212 ATTGGCCCCCAATCCCTCATCAAACCTCAAGAACTCACATCCCCTTAAAGAGCATTTGA
838 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGA
*
17697271 GATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
17697336 TCACAAAATCTTGTAC-CTTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATAC
66 TCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATAC
* * * *
17697400 AAGGATCACGTCTACCAAGTTTCGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAAT-CCGAAA
129 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * * *
17697464 CGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTGTTCCCATGAAACTTCACATGA
194 CGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
17697529 AGGCTTAAGGGACCACTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGCAGAAATATGA
259 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * *
17697594 AGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGACTA
324 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC--
* * * * * * ** **** * * *** *
17697659 CCGAGTTTGGGGCTAAAACTCCTTTCGAAAAAAT-TTTAAAAAATCCCGAACCGCAAAAGGTTTC
387 CGGCG-TAGTGCCT---GC-CC-GCCG--CCCGTCGTT------T--CG--TCG--GTTGGCTT-
*** * * * ** *** * ** * * *** * *
17697723 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
431 AGGCAT-ACG--GAGTTCATTCCCAGTC-T-AAG--ATCAGACCGGAC-CG-AGGGTT----G-C
* * * * ** * * * * *** ***** *
17697788 CATTGTATGAATTTACAAGC-CATAAAAGTGGCATTGGCACGTAGAAATATGAAGATGTGC-CTA
482 GATAGCA-GGATCGAC-AGCACGT-AGAGGGGGACCCG-AC-T-G--ATCCCCGGCT-TGCGC--
* * * * **** * ** * *
17697851 AACCCACCTACCACCCTATCGATCC-AC-GA-CTTGTGCA-TCTCGTCTCTC-T-GGCCGGCGTA
536 -A-TC-CC-A-C-CCCTCT-G-GCCGGCTGAGCGCCCGCACGCTCGT-T-TCGTGGGTTGACTTA
** * * * * * * * *
17697910 GTGCCCGCCCACCGCCGCTCGTTCCATCGGTTGGCTTAGGCATATGAAGTTCATTCCCAATCTAA
591 --G---GCATA-CG-AGTTCATTCC--CAG-T--C-TAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17697975 GATC-AGACCAGA-TCGAGGGTTACGATAGTAGGATCAGCAGCACGCAGAGGGGGACT-CGACCG
643 GATCGA-ACCGGACT-GAGGGTTAC-------GG--CAGCA-CATGC----TGGG-CTCCG-GC-
*** * * ** * * * * ** *
17698037 ATCCCCAGCTTG-CGCATCCCGTCCCTCTGGCCGACTGAGCACCCGCA-CGCTCGGTTCATGGGC
689 ATGTGCTG-GTGCCGCAT----T-TTTCT--TCGTCGGGGCA--C-CATCG-TCGGAGCAT-CG-
** * **** *
17698100 TCAGGTATG-TTCTG---GTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCAGAGCAGCGTCGG
740 TC-GG-A-GAACCTGACCG-GCGGCATTGGGGTT-C-C---G-ACGAT--T--G-G--G-G--GG
* * * * * * *
17698161 AGAACCTGACCGGTGGCAT-TGGGGTTCCGACGATTGAGGGGGCCGGAGGGGAGGGTG-TGCACA
785 -G--CC-G---GG-GG-GTGT-GCG---C-AC-A-TGA-TGTG--TGA----TGGGTGCT-CATA
** ** ** * * *
17698224 CATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCA
826 C-T--TG-GCCCT-TATATTGG--C---CCCCT--------------ATCCCTCATCAAACCTCG
17698289 AGAACTCACACCCCCTTAAAGAGCATTTGA
867 AGAACTCAC-CCCCCTTAAAGAGCATTTGA
* *
17698319 GGTTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
17698384 TCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * *
17698449 GGATCACTTCTACCAAGTTT-GGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAGTCACGAACCG
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * *
17698513 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAG
196 TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
17698578 GCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCATGCAGAAATATGAAG
261 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
17698643 ATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGAC
326 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* ** * * * *
17698708 GTAATACCCGCCCACCCACCCGCCCGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTC
391 GTAGT----GCCTGCCC-GCCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * ** ** *
17698773 TCAGCCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCTCGTAGAGGGGGACC
450 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACC
* ** ** * * * * * *
17698838 CGA-TCGATCCTCAACTTATGCAT-CCGCCGCTCTGGCCGACTGAGTGCCCACACGCTCGTTTCA
515 CGACT-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * * * * **
17698901 TGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTTTACG-AT-CGGA--CCGA-ACCGAGGGGT
579 TGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTC-ATTCCCA-GTCT
** * * *** ** ** * * * *
17698961 GCGA-C-AACACATG-CTG-GGCTCGGGGGGGC-CGGGGTGTG-TGCGCACATGATTGCGATGGG
641 AAGATCGAAC-C-GGACTGAGGGTTACGGCAGCACATGCTGGGCTCCG-GCATG--TGC--T-GG
* * *** * ** * * ** * * * **
17699020 TGCTAGTACTTGGCCCTT-ATATTGGCCCCCTATAC--CTAATCAAACCTC-GAGAACTCACACC
698 TGC-CGCA-TT-TTTCTTCGT-CGGGGCACC-AT-CGTCGGAGC-ATCGTCGGAGAAC-CTGACC
** ** ** * * * ** *****
17699081 CCCTTAAAGAGCATTAGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTG-A-A--
755 GGC-----G-GCATT-G-GGGTTCCGACGATTG--G--GGGGGCC-GGGGGGTGTGC-GCACATG
* *** ** * *** * * ** * ** * ** *
17699141 ATG-GGGATAATTTTTTCA-A-ATGGTCACAAAATCTTGTACACTTCGAGT-TTTTAGTTGAA-T
806 ATGTGTGAT-GGGTGCTCATACTTGG-C-CCTTATATTG-GC-CCCCTA-TCCCTCA-TCAAACC
***** ** **** * * **
17699201 TTTTTTA-TGCATGCCAAAAAAAAAACA-AGGA
864 TCGAGAACT-CACCCCCCTTAAAGAGCATTTGA
* * * * ** ** * * * * * ** *
17699232 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT-TTTAAAAAATCCCGAACAGCA
1 -GA-TTTTA-CAGGTTTGCTGCCAGTA-GCCATT----AAAGTGTCT--GAAAT-GGGGACA-C-
* ** * * * ** * ** ***
17699296 AAAAGTTTTGAAAATTGTGA-AAAA--TAG-A-A-AACGAGTCATCTT-GCCATGAAACTTCACG
53 ----TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT--TTTTAG-C-TGAATTTTTTTG
* * * * * * ** *** * *
17699354 TG-AAGGC-------ATA-AGGGACCA-TTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGC
110 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCC--AAAACT--CCTT--C
**** ** * * * * * *
17699408 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAGGCTTGCG--CATC
168 ---C-G-AA-A--AA-AT-TTTAAAAAATC-CCGA--ACCGTA---A--AAAG-TTTCGAAAATC
** ***** * *** * * * ** ** **
17699471 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCC-CGCCTACTCGTTTCGTCGGTTGGCTT-
214 ATG-AAAAATAGAAAACG-AGT---CG---TCTTGCCATG-AAACT--TCACGT--GAAGGCTTA
* * ** * * * *** ** * * **
17699534 A-GG--CATACGGAGTTCA-TTCCCA-CTC-TAAGATAGGACCGGACCGAGGGTTGCGGCAGCA-
266 AGGGACCAT-TGTA-TGAATTTACAAGC-CATAA-A-A--A-TGG-CATTGGCATGCAGAAATAT
* * * ** ** ** ** * * * * *
17699592 G--GAT-CGACTGAACGTA-GAAGGGGACCCGGTCGATCCTCGACTTG-TCATCCCGCCCCTCTG
322 GAAGATGTGCCTAAACCCACCTA--CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* ** * * * *
17699652 GTCGGC-T-G-AAC-GCCCGCACG--C-TCATTTCGTGGGTTGACTTTGGCATACGGAGTTCATT
385 GCCGGCGTAGTGCCTGCCCGC-CGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * *
17699710 CCCAGTCTAAG--CATA-C--A--GA--GTT-C-ATTCCCA--ATCTA-AG-A--T-CA----GA
449 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-TAGCAGGATCGACAGCACGTAGAGGGGGA
** * * ** * * **
17699753 -CC-A--GAT-CGAGGGTTGCG-GTAGCA--CATGCTGGGCTCGAGCATGTGCTG-GTGC-CG-T
513 CCCGACTGATCCCCGGCTTGCGCATCCCACCCCT-CT-GGC-CG-GC-TGAGC-GCCCGCACGCT
* ** * *** * * ** *** * * *
17699807 -ATTT--T-TCTTCACCGGGGCACCATCGTCGGAGCA-TCACC-GGAGAA-CCTGACCGACG-GC
572 CGTTTCGTGGGTTGACTTAGGCA-TA-CG--AGTTCATTC-CCAGTCTAAGCAT-ACGGA-GTTC
*** * ** **** * * * * * * * **
17699864 ATT-GGGGTTTCGGTAATCGGGGTGGCCGGGGGGGT--GTGC-GTACATGATGTGTGATGGGTGC
630 ATTCCCAGTCTAAG--ATCGAACCGGACTGAGGGTTACG-GCAGCACATGCTG-G-GCTCCG-GC
* * * * * * * *
17699925 -TAGTACTTG-GCC-C--TTAT-AT--T--GGGC-CCTTATACCTC--ATCAAACCTC-GAGAAC
689 AT-GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC--AT-CGTCGGAGC-ATCGTCGGAGAAC
** ** * * ** * * ** * *** ** *
17699976 TCACACCCCCTTAAAGAGCATTTGAGATT-TTACAGGTT--TGCTGCCAGTAGCCAT-TAAAGTA
749 -CTGACCGGC-----G-GCA-TTGGGGTTCCGAC-GATTGGGGGGGCC-G-GGGGGTGT-GCGCA
* * **** ** * *** * * ** * ** *
17700037 TATGAAATG-GGGACACTTTTTTCA-A-ATGGTCACAAAATCTTGTACACTTCGAGT-TTTTATC
802 CATG--ATGTGTGA-TGGGTGCTCATACTTGG-C-CCTTATATTG-GC-CCCCTA-TCCCTCATC
*** * * ** * ***** *
17700098 TGAATGTTTGTGTGCATGCCAACAAAAATACAAGGATCATCTCT-A
859 --AAACCTCGAGAAC-T--CACCCCCCTTA-AA-GAGCAT-T-TGA
* * *** * * *** *** ** ** * **
17700143 CCAATTTTGGGGCCAAAACTT-CTTCC-GAAAAAATTTTAAAAAATCTCG-AACCGTAAAAAGTT
1 --GATTTT----AC-AGGTTTGCTGCCAGTAGCCA--TTAAAGTGTCT-GAAATGGGGACACTTT
** * * ** *
17700205 TTGAAAATCGTGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCATATGAAGGCTTAAG-
56 TTTCAAAT-G-G-----TCA-CAAA--A----TCTTG---T-ACACTTC----G-AGTTTTTAGC
* * * * * * * * *
17700268 GGACCATTGTATGAATT-TACAAGCC-ATAAAAATGGCATAGG--CACG--TA-GAAATATGAAG
98 TGA--ATT-T-T--TTTGTGCATGCCAAAAAAAAT-ACA-AGGATCACGTCTACCAAGTTTG--G
* * * * *** * * * * **** ** ****
17700326 ATGTGCCTAAAC-CC-ACCTAGCACCCTATT----GATCCACG--GCTTGCGCA-TCCCGTCTCT
153 --G-GCCAAAACTCCTTCCGA-AAAAATTTTAAAAAATCC-CGAACCGTAAAAAGTTTCGAAAAT
***** *** * ** * ** * ***
17700382 C-TGGCCGGCGTAG-TGCCCACCCGT-TCGCC-TG-CTCGTT-TCGTCGGTTGCTT-A-GG--CA
213 CAT-G-AAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TTCACGT-GAAGGCTTAAGGGACCA
* * ** * * * * * * ** * *** * * *
17700437 TACGGAGTTCA-TTCCCAGTC-T-AAGATCGAACCGG-A-CCGAGGGTTAATGCAGCAAGATCGA
274 T-TGTA-TGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAAAT-ATGAAG-ATG-T-GC
* * ****** * * * * *** * *
17700497 C-AGCACGCAGAGGGGGACTCGA-CTGATCCCCGACTTGCGCATCCTACCCCTCTGGCCGG-TTG
332 CTA-AACCCA-CCTACCACCCTATC-GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-
* ** * ** * * ** * *
17700559 AGCGCCCACTCGCACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCTTA
393 AGTGCCTGCCCGC-CG-CCCGT-CG-T---TT---CGT-C-G-G----TTGGC--T-TAGGCATA
* * * * ** * * *
17700624 TGGAGTTCTTTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGGAGCA-CAT-G-CTGGGCT
438 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGAC--AGCA
* ** * ** ** * * * *** * *
17700686 CG-AGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCA--CCATTGC-CGGAGCATCGCCTG
501 CGTAG-A-G-G-GGGACCCG-ACTGATCCCCGGCTTGCGCATCCCACCCCTCTG-GC--CGGCTG
** * ** * ** **** ****
17700746 AGAACCTG-AC-CGAGGCATT-G-GGGTTCCGACGATCGGGGGGGCCGAAGGGGGGTGTGCACAC
558 AGCGCCCGCACGC-TCG-TTTCGTGGGTT--GAC--T-TAGGCATACG-A-GTTCAT-T-C-C-C
* ** * *
17700807 ATGATGTGTG-ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGACAACA
610 A-G-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTACG------
* * * * * **** *
17700871 GGATCGACAGCATGCAGAGGGGGAC-CCGAC-TGATCCTCGGCTTG-CACATCCCCCATC-T-GG
667 GCA--G-CA-CATGC----TGGG-CTCCGGCATG-TGCT-GG--TGCCGCATTTTTCTTCGTCGG
** * * * * ** * * * * ***
17700931 CCGGC-TGAGCGGCTGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCATAG-T
719 --GGCACCATCGTC-GGA-G--CA--TCGTCGGAGAACCT--G-A-CCGGCG-GCATT-GGGGTT
* * * **** ** ** ** ** * * * * *
17700994 -CTAAGCATACGGTGTTAATTCC-CAGTCTAAGATCAGATTGGATTGAGGGTTGCGGTAGCACAT
770 CCGACG-AT-TGG-G--GGGGCCGGGGGGTGTGCGCACA-T-GA-TGTGTGATG-GGT-GCTCAT
* * * * * ** * * ** *
17701057 GCTAGGGTCGGGCATATGTTGGTGCTGCATTTCTCTTCGTCGGCGCACTATCGC-CGGAGAACCT
825 ACT-TGG-C--CCTTATATT-G-GCCCCCTATC-C--C-TC--ATCA--AAC-CTC-GAGAA-CT
* ******* ** ** *
17701121 GACTGGTGGCATTG-GTGTTCCGAA
873 CACCCCCCTTAAAGAGCATT-TG-A
** * * * * * ** * * * *
17701145 GATCGGGGGGTCCGGGGGGTGTGC-GCACATGATGTGCGA-T-GGGTG-CTGGTACT--TGACCC
1 GAT-----TTTAC---AGGTTTGCTGC-CA-G-T-AGCCATTAAAGTGTCT-GAAATGGGGACAC
* ** ** ** * * *** ***
17701204 TTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCTTACCCCCTTAAAGAGCATTTGAGA
53 TT-T-TT----TCAAAT-GGTCA-CAAAA-TCTTGTACACTT--CGAGTT-TTTAGC---TGA-A
**** * * * ** *
17701269 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGA-CACTTTTTTCAA--AT-
102 TTTT-----TTTG-TG-CA-T-GCCA--AAA-AAAAT-ACA-A-GGATCACGTCTACCAAGTTTG
* ** *
17701330 GGTCACAAAATCTTGTACACTT-CGACTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAATAT
152 GGGC-CAAAA-C---T-C-CTTCCGA------A----AA---AATT-T---T----AAAAAAT-C
* * *
17701394 ACGAGGATCACGTGTAACAAGTTTGGGGTCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGA
188 CCGA--A-C-C--GTAAAAAG-TT----TC----G--------------------AAAA--TC--
*
17701459 ACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGT
214 A---T-----G----AAAAA---T-------AGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * ** *
17701524 GAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACACAAAAATAT
257 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
*
17701589 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCCGGC
322 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * *
17701654 TGGCGTA--G--TGCCCGCC-CGC-TCATTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCC
387 CGGCGTAGTGCCTGCCCGCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * * ** * ** * * **
17701713 AGTGTAAGATTGGACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCGGTGGGGGGCAAG
452 AGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACCCG
* * * ** * * *
17701778 ACCGATTCCTGGCTTGCGCATCCCGGCCCTCTGGTCGGGTGAGCGCCCGCATTG-TCGTTTCGTG
517 ACTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA-CGCTCGTTTCGTG
*
17701842 GGTAGACTTAGGCATACG-G---------AG--T-----T-C--A-TT--TT--CAGTCTAAGAT
581 GGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
17701882 CGGACTGGACCGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
646 CGAACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTC
** * ** * *
17701947 TTCACCGAGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGACG
711 TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * * ** *
17702012 ATTGGGGGCGCCGGGGGGTGTGCACACATGATGTGTGGTGGGTGCTGGTATTTGGCCCTTATATT
776 ATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTCATACTTGGCCCTTATATT
*
17702077 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCA
841 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGA
* *
17702133 GATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
17702198 TCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGTGCATGCCAACAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * *
17702262 GGATCACGTCTGCCAAGTTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCGTATC
131 GGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* *
17702327 ATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
195 GTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
17702392 GGCTTAAGGGACCATTGTATGAATTTACTAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
260 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * * *
17702457 GATGTGCCTAAACCCACCTACTACCCTATCGATCGACTG-TTGCGCATCCCGTCTCTCTGGTCGG
325 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *** *
17702521 TGTA--G--TGCCC-CCTCCC-TCGTTTCGTCAAATGGCTTAGGCATACGGAGTTCATTCTCAGT
390 CGTAGTGCCTGCCCGCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * ** * * *
17702580 CTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACC
455 CTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACCCGACT
* * * * * * ** * *
17702645 GATCCCTGGCTTGCACATCTC-GCCTTCTGGCTGGCTGAGTACCCGCACGTTCATTTCGTGGGTT
520 GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
17702709 CACTTAGGCATAAGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------CGA
585 GACTTAGGCAT-ACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
** * * * *
17702753 A-C---C-GAGGGTTGTGACAGCACATGCTGGGCTCAGGCATGTCCTGGTGCCGTATTTTTCTTC
649 ACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTC
* ** * * *
17702813 GTCGGGGCACTATCGTCGGAGCATCG-CTGGAGAACCTGACTAGCGGCATTAGGCTTCCGATGAT
714 GTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * * * **
17702877 CGGGGGGGCCTAGGGGGTTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
778 TGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTCATACTTGGCCCTTATATT
17702942 GG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCCTTAAAGAGCATTTGA
841 GGCCCCCTATCCCTCATCAAACCTCGAGAACT--CACCCCCCTTAAAGAGCATTTGA
* * *
17702998 GATTTTACAGGTTTGCGGCTAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * **
17703063 TCACAAAATCTTGTATC-CTTCGAGTTTTTTAGCTGAATTGTTTTATGCATGCCAACCAAAATAC
66 TCACAAAATCTTGTA-CACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * *
17703127 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTAAAAAAATCTCGAAC
129 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
** ** *
17703192 CGTAAAAAGTTTTAAAAATTGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
194 CGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * ***
17703257 AGGCTTAAGGGACCATTGTCTGAGTTTACAAGCCATAAAAATGTCATTGGCACATAGAAATATGA
259 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * * *
17703322 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGTATCCTGTCTCTCTGGTCA
324 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
17703387 ACGTAGTGCTCGACCGCCCATCCGCCCGTTCGTTTCATCGGTTGGATTAGGCATACGGAGTTCAT
389 GCGTAGTG--C--CTGCCC-GCCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
17703452 TCCCAGTCTAAGATCAGACCAGATCGAGGGTTCCAACAACAGGATCGGCAGCACGTAGAGGGGGA
448 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGA
* * * ** * * *
17703517 CCCG-GTCGAT-CCCGGTTTGCACATCCTGCCCCTCTGACCGGTTGAGCGCCCGCATGCTCGTTT
513 CCCGACT-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
17703580 CGTGGGTAGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-TC-
577 CGTGGGTTGACTTAGGCATA-CGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
** * * * * *
17703630 ---A--G-A-C---C-GAGGGTTGTGGCAGCACATACGGGGCTCAGGCATGTGCTGGTGTCACAT
641 AAGATCGAACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCAT
* ** * * * *
17703684 TTTTCATCACCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCAGCATTGGGGTTT
706 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * * ** *
17703749 CGGCAATCGGGGGGGCCGGGGGGGTGTGCGCACATCATGTGTGATGGGTGCTGGTGCTTGGCCCT
771 CGACGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTCATACTTGGCCCT
* * * *
17703814 TATATTGGCCCCCTATCCCTTATTAAACCTCGAGAACTCACACTCCCTTAAAGAGCACTTGA
835 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGA
* * *
17703876 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACGCTTTTTTCAAATTG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
17703941 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * * * *
17704006 GGATCATGTCTAACAATTTTGGGGCCAACACCCCTTCCAAAAAAATTTTAAAAAATCCCAAATCC
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA-CC
* * * *
17704071 -CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGCGAA
195 GTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
17704135 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATCTGAA
260 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
*
17704200 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGG
325 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
17704265 CGTAGTGCCCGCCCGCCTGTCCGCTTGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCA
390 CGTAGTGCCTGCCCGCC-GCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * * * * *
17704330 GTCTAAGATTGGACCGGACCAAGGGTTG-TAGCAGCAGGATC-ACCAGCACGCAGAGAGGGACCC
453 GTCTAAGATCAGACCGGACCGAGGGTTGCGA-TAGCAGGATCGA-CAGCACGTAGAGGGGGACCC
* ** * * ** * * *
17704393 GATTGATCCCCGATTTGCGCATCCCGCCCCTGTAACCGGGTGAGTGCCCGCACGCTCGTTTCATG
516 GACTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * *
17704458 GGTTGACTTAGGCATACGAGTTCGTTCCCAGTCTAAGCATACGAAGTTCATTCCAAGTCTAAGAT
581 GGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* ** * * * * * * * *
17704523 CGGATTGGACCGAAGGTTGCGGTAGCAAATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
646 CGAACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTC
* * * ** *
17704588 TTTGCCGGGGCACCA---T-----CA---TCGGAGAACCTAACCGGTAGCATTGGGGTTCCAACG
711 TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * ** **
17704642 ATCGGGGGGGCCGGGGGGCGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
776 ATTGGGGGGGCC--GGGG-GGTGTGCGCACATGATGTGTGATGGGTGCTCATACTTGGCCCTTAT
* *
17704707 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTGAAAGAGCATTTGA
838 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGA
* *
17704766 GATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
17704831 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* *
17704896 GGATCACGTCTAGCAAGTTTGGCGCCAAAA---C-TCC---------TT------T-------C-
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
*
17704934 T-AAAA---TCG-------TGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAG
196 TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
17704988 GCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACGTAGAAATATGAAG
261 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* *
17705053 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGC
326 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
17705118 GTAGTG-CT-CGC-CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGT
391 GTAGTGCCTGCCCGCCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * ** * * *
17705180 CTAAGATCGGACCCAACCGAGGGTTGTGGCAGCAGGATAGGCAGCACGCAGAGGGGGACCCGA-T
455 CTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACCCGACT
** * * * * * *
17705244 CGATCCCTAGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGAGT
520 -GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * * *
17705309 TGACTTAGGCATACAGAGTTCATTCCTAGTCTACGCATATGGAGTTCATTACCAATCTAAGATTG
584 TGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * *
17705374 GACCGGACTGAGGGCTACGGTAGCACGTGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
648 AACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * * * * * * * *
17705439 TGTCGAGGCACCATCGTCAGAGCATCGCCGAAAAATCTAACCGACGACATTGGGGTTCTGGCGAT
713 CGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * ** ** *
17705504 CGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCTTTATATTGG
778 TGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTCATACTTGGCCCTTATATTGG
17705569 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
843 CCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGA
*
17705623 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * ** *
17705688 TCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTCTGTGCATGCTATCAGAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * * * *
17705753 GGATCACGTCCACCATGTTTCGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCC
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * * *
17705818 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGTAG
196 TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
17705883 GCTTAAGGGTCCATTATAAGAATTTACAAGCCA-AAAAATTGGCATTGGCATGCAGAAATATGAA
261 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCATGCAGAAATATGAA
* * * *
17705947 GATGTGCCTAAACCCACCTACCACACTATCAATCCACGGCTTGCGCATCCCATCTCTTTGGCCGG
325 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * **
17706012 CGTCGTG-TTCGCCCGACCCGTCTGCTCGCTCGTTTCATCATTTGGCTTAGGCATACGGAGTTCA
390 CGTAGTGCCT-GCCCG--CCG-C--C-CG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * * * **
17706076 TTCCTAATCTAAGAAT-GGACTGGACTGAGGGTTGCAACAGCAGGATAGGCAGCACACAGAGGGG
447 TTCCCAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGG
* * *** * *
17706140 GACCCG-GTCGATCCCTGGCTTGCGCATCTTGCCCCTCTGGCTGGCTGAGCGCCCGAACGCTCGT
511 GACCCGACT-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
17706204 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCATT
575 TTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* ** * * * *
17706269 CTAAGATC-AGACCGGACCGAGGGTTGTGGTAGCACATGCTAGGCTCGGGCACGTGCTGGTGCCG
639 CTAAGATCGA-ACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCG
* * *
17706333 CATTTTTCTTCGTCGGGGCACCATCG-C----CA------GAGAACCTGACCGGCAGCACTAGGG
703 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* * * * * **
17706387 TTCTG-GGATCGGGGGGGCCGGGGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
768 TTCCGACGATTGGGGGGGCC----GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTCATACTT
* * *
17706451 GGGCCTTATATTGGCCCCCAATCCCTCCTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
829 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATT
17706516 TGA
893 TGA
*
17706519 GATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
17706584 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCTTGGCAACAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* **
17706649 GGATCACATCTACCAAGTTTGGGGTAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* *
17706714 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGCAG
196 TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ** *
17706779 GCCTAAGGGACCATTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAG
261 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
17706843 ATGTGCCTAAA-CCACCTGCCACCCTATCGATCCACGACTTGTGCATCCCGTCTCTCTGGCCGGC
326 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
17706907 GTAGTGCCCGGCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAG
391 GTAGTGCCTGCCCG-CCGCCC-GTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * * * ** * ** *
17706972 TCTAAGATCAGATTGGATCAAGGATTGCGGCAGCAAGATCGGTAGCAACGTAGAGGGGGACCCGG
454 TCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGC-ACGTAGAGGGGGACCCGA
* * * * * *
17707037 CCGAT-TCCGGCTT-AGCATCCCACCCCTCTGGTCGGATGAGCGCCCGCAACGCTCGTTTCATGG
518 CTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGC-ACGCTCGTTTCGTGG
* *
17707100 GTTGACTTAGGCATACGGAGTTCATT-GCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
582 GTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * * * * * * *
17707164 -GAACTGAACCAAGAGTTCCGACAGCAAATGCTGGGCTCGGGCATATGCTGGTGTCGCATTTTTC
646 CGAACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTC
* * * * **
17707228 TTCAT-GGGGCACCATCGTCGGAGCATCAATCGGAGAACCTAACCGGCGGCATTGGGGTTCTGGT
711 TTCGTCGGGGCACCATCGTCGGAGCATC-GTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* *** * * * * ** ** * *
17707292 GA-TCGCATGGTCGGGGGGATATACGGACATGATGTGCAATGGGTGCTGGTACTCGACCCTTATA
775 GATTGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGTGATGGGTGCTCATACTTGGCCCTTATA
* * *
17707356 TTGGCCCCCTATCCCACATCAAACCTCAAGAACTCAGACCCCCTTAAAGAGCATTTGA
839 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-CCCCCCTTAAAGAGCATTTGA
*
17707414 AATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
17707479 TCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAATAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
*
17707544 GGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * * *
17707609 AAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCGTGAAACTTCACGTGAAG
196 TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * ** *
17707674 GCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAGAATGGCATTGGCACACAGAAATATAAAG
261 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * **
17707739 ATGTGCCTAAAGCCACCTACCACCCTATTGATCCACGGCTTGCGCATCTCGTCTTTCTGGCCAAC
326 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
17707804 GTA--G--TGCCCGCC-CGC-TCGTTTTGTCAGTTGGCTTAGGCATACGGTGTTCATTCCCAGTC
391 GTAGTGCCTGCCCGCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * * * * **
17707863 TAAGTTCGGACCAGACTGAGGGTTGTGACAGTAGGATCGGCAGCACGCAGAAGGGGACCCGACCA
456 TAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACCCGACTG
* * * * * * * *
17707928 ATCCTCGGCTTACGCATCCCGCCCCTTTGGCCGACTGAGCGCCCGTACGCTCATTTCATGGGTTG
521 ATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * *
17707993 ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
586 ACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* * * * * *
17708058 CTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATTTGCTAGTGCCGCATTTTTCTTCA
650 CCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCG
* *
17708123 TCGGGGCACGATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
715 TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTG
* * * * **
17708188 GGGGGGCCAAGAGTGGTTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
780 GGGGGGCC--G-GGGGGTGTGCGCACATGATGTGTGATGGGTGCTCATACTTGGCCCTTATATTG
* *
17708253 GCCCCCTATCCCTCATCAATCCTAGAGAACTCACACCCCCTTAAAGAGCATTTGA
842 GCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGA
* * * * *
17708308 CATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTAAAATGGGAACACTTTTCTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
17708373 TCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGAATGCCAAAAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * *
17708438 GGATAATGTCTACCAAGTTTGGGGTCAAAACTCCTTCC-AAAAATTTTTAAAAAAAT-CTGAACC
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACC
* * * * *
17708501 GCAAAAAGTTTTGAAAATCATTGAAAAATAGAAAACGAGTCATCCTTGCCAAGAACCTTCACGTG
195 GTAAAAAGTTTCGAAAATCA-TGAAAAATAGAAAACGAGTCGT-CTTGCCATGAAACTTCACGTG
*
17708566 AAGGCTTAAGGGA-CATTGTATGAAATTTACAAGCCATAAAAAATGGCATTGGGC-TGGCAGATC
258 AAGGCTTAAGGGACCATTGTATG-AATTTACAAGCCAT-AAAAATGGCATT-GGCAT-GCAGA-A
* *
17708629 ATATGAAGATGTGCCTAAACCCA-CTAACCACCCTATCGAATCCACGGCTTGGCGTATCTCGTCT
318 ATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCG-ATCCACGGCTT-GCGCATCCCGTCT
* * * *
17708693 CTCTGGCCCGCG-A--G--TGCCCGCC-CGC-TCATTTAGTCGGTTGGCTTAGGGCAATACGGAG
380 CTCTGGCCGGCGTAGTGCCTGCCCGCCGCCCGTCGTTTCGTCGGTTGGCTTA-GGC-ATACGGAG
** * * ** * **
17708751 TTCATTCTTAGTGGTAAGATTCAAACTATGACCGAGGGTTGCCCCGGTAAAGCCAGGGATCCGGT
443 TTCATTCCCAGT-CTAAGA-TCAGAC-CGGACCGAGGGTTG---C-G-ATAG-CA-GGAT-CGAC
* * *
17708816 AGCACGCAGAGGGGG---C-A---A----C--C---AG-AT--CA---AT-T--CC--C---G-G
497 AGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
** * *
17708850 CTTG--CGCTCG-TTCGTGGTTTGACTTATGGCATACGGAGTTCATTCCCAAGTCTAAGCATACA
562 CCCGCACGCTCGTTTCGTGGGTTGACTTA-GGCATAC-GAGTTCATTCCC-AGTCTAAGCATACG
* * * **
17708912 GAGTTCATT-CCA-TCTAAGATCGAACCGGACTGAGGGTTGCGACAGCACATACTGGGCTTGGGC
624 GAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGC
* * **
17708975 ATGTGCTGGTGCCACATTTCTCTTCGTCGGGGCACCA---T-----CA---TCGGAGAACAAGAC
689 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
* * * * *
17709029 CGACGGCATT-GGGTTCCGGCTATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGTGATGGGT
754 CGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGT
* * * *
17709093 GCTGATACTTGGCCCTTATATT-GCCCCCTATTCCTCATCAAACCTTGAGAACTCACACCCTCTT
819 GCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTT
17709157 AAAGAGCATTTGA
883 AAAGAGCATTTGA
* * *
17709170 GATTTTACAAGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
17709235 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * *
17709300 GGATCACGTCTTCCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCTCAAACCG
131 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * *
17709365 TAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACATGAA
196 TAAAAAG-TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
17709429 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATGTGAA
260 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
*
17709494 GATGTGCCTAAACCCACCTACCACCCAATC-ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
325 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * ** * * *
17709558 TGTAGTGCCCGCTTGCC-CGC-TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAAT
390 CGTAGTGCCTGCCCGCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * ** * *
17709621 TTAAGATC-GA-AGTAGA-TGAAGGGCTGCGGCAACAGGATCGACAGCACGCAGAGGGGGACCCG
455 CTAAGATCAGACCG--GACCG-AGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACCCG
* * * * *
17709683 GCCGATCCCCGGCTTGCGCATCCCATCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGG
517 ACTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
*
17709748 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
582 GTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
17709813 CG
646 CG
17709815 TCGGAGAACC
Statistics
Matches: 13803, Mismatches: 2854, Indels: 2558
0.72 0.15 0.13
Matches are distributed among these distances:
847 18 0.00
848 165 0.01
849 111 0.01
850 4 0.00
851 2 0.00
852 174 0.01
853 1 0.00
854 2 0.00
855 30 0.00
856 14 0.00
857 253 0.02
858 55 0.00
859 15 0.00
860 75 0.01
861 46 0.00
862 245 0.02
863 225 0.02
864 179 0.01
865 268 0.02
866 241 0.02
867 98 0.01
868 4 0.00
869 7 0.00
870 16 0.00
871 21 0.00
872 22 0.00
873 137 0.01
874 79 0.01
875 18 0.00
876 13 0.00
877 289 0.02
878 266 0.02
879 357 0.03
880 58 0.00
881 28 0.00
882 4 0.00
883 4 0.00
884 1 0.00
885 7 0.00
886 29 0.00
887 67 0.00
888 128 0.01
889 246 0.02
890 330 0.02
891 110 0.01
892 159 0.01
893 239 0.02
894 882 0.06
895 1080 0.08
896 755 0.05
897 759 0.05
898 1218 0.09
899 487 0.04
900 72 0.01
901 362 0.03
902 154 0.01
903 95 0.01
904 554 0.04
905 7 0.00
906 6 0.00
907 14 0.00
908 24 0.00
909 19 0.00
910 17 0.00
911 26 0.00
912 48 0.00
913 27 0.00
914 26 0.00
915 45 0.00
916 36 0.00
917 33 0.00
918 15 0.00
919 33 0.00
920 35 0.00
921 17 0.00
922 20 0.00
923 31 0.00
924 12 0.00
925 39 0.00
926 20 0.00
927 23 0.00
928 17 0.00
929 29 0.00
930 4 0.00
931 9 0.00
932 14 0.00
933 8 0.00
934 10 0.00
935 12 0.00
936 21 0.00
937 8 0.00
938 48 0.00
939 5 0.00
940 12 0.00
941 17 0.00
942 19 0.00
943 2 0.00
944 2 0.00
945 3 0.00
946 2 0.00
947 16 0.00
948 25 0.00
949 27 0.00
950 44 0.00
951 32 0.00
952 19 0.00
953 25 0.00
954 17 0.00
955 9 0.00
956 2 0.00
957 4 0.00
958 7 0.00
959 47 0.00
960 5 0.00
961 4 0.00
962 2 0.00
963 15 0.00
964 16 0.00
965 11 0.00
966 5 0.00
967 4 0.00
968 11 0.00
969 11 0.00
970 8 0.00
971 11 0.00
972 12 0.00
973 7 0.00
974 13 0.00
975 20 0.00
976 8 0.00
977 7 0.00
978 3 0.00
979 13 0.00
980 16 0.00
981 8 0.00
982 7 0.00
983 4 0.00
984 6 0.00
985 10 0.00
986 7 0.00
987 22 0.00
988 18 0.00
989 21 0.00
990 13 0.00
991 5 0.00
992 13 0.00
993 7 0.00
994 14 0.00
995 12 0.00
996 6 0.00
997 10 0.00
998 20 0.00
999 10 0.00
1000 17 0.00
1001 16 0.00
1002 13 0.00
1003 32 0.00
1004 17 0.00
1005 14 0.00
1006 14 0.00
1007 8 0.00
1008 9 0.00
1009 10 0.00
1010 14 0.00
1011 6 0.00
1012 9 0.00
1013 5 0.00
1014 3 0.00
1015 12 0.00
1016 5 0.00
1017 15 0.00
1018 2 0.00
1019 3 0.00
1020 2 0.00
1021 3 0.00
1022 19 0.00
1023 10 0.00
1024 97 0.01
1025 205 0.01
1026 231 0.02
1027 186 0.01
1028 112 0.01
1029 134 0.01
1030 219 0.02
1031 81 0.01
1032 104 0.01
1033 80 0.01
1034 53 0.00
1035 32 0.00
1036 58 0.00
1037 56 0.00
1038 176 0.01
1039 39 0.00
1040 86 0.01
1041 93 0.01
1042 62 0.00
1043 40 0.00
1044 51 0.00
1045 49 0.00
1046 47 0.00
1047 237 0.02
1048 224 0.02
1049 17 0.00
1050 15 0.00
1051 37 0.00
1052 11 0.00
1053 116 0.01
1054 13 0.00
1055 14 0.00
1056 10 0.00
1057 9 0.00
1058 10 0.00
1059 9 0.00
1060 41 0.00
1061 27 0.00
1062 27 0.00
1063 7 0.00
1064 16 0.00
1065 8 0.00
1066 19 0.00
1067 7 0.00
1068 30 0.00
1069 79 0.01
1070 49 0.00
1071 64 0.00
1072 124 0.01
1073 84 0.01
1074 34 0.00
1075 112 0.01
1076 23 0.00
1077 15 0.00
1078 16 0.00
1079 8 0.00
1080 3 0.00
1081 6 0.00
1082 1 0.00
1084 2 0.00
1085 77 0.01
1086 351 0.03
1087 5 0.00
1088 2 0.00
1090 1 0.00
1091 1 0.00
1093 1 0.00
1094 1 0.00
1096 1 0.00
1097 6 0.00
1098 4 0.00
1099 5 0.00
1100 9 0.00
1101 37 0.00
1102 12 0.00
1103 10 0.00
1104 6 0.00
1105 13 0.00
1106 3 0.00
1107 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (895 bp):
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCTGCCCGCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGACCCGACTG
ATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
CGGACTGAGGGTTACGGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGT
CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGG
GGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTCATACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACCCCCCTTAAAGAGCATTTGA
Found at i:17694448 original size:158 final size:158
Alignment explanation
Indices: 17694111--17694458 Score: 452
Period size: 158 Copynumber: 2.2 Consensus size: 158
17694101 CGTCGATTGG
* * *
17694111 CTTAGGCATACAGAGTTCATTCCCATCTATA-ATCAGATCGGATCGAGGGTTGCTGCAACAGGAT
1 CTTAGGCATACGGAGTTCATTCCCATCTA-AGATCAGATCAGACCGAGGGTTGCTGCAACAGGAT
* * * *
17694175 CAGCAGCACGTAGAGGGGGACCCGACCAATCCCCGGCTTACGGATCCAACCCCTCTGGTCGATTG
65 CAGCAGCACATAAAGGGGGACCCGACCAATCCCCGGCTTACGCATCCAACCCCTCTGGTCGACTG
*
17694240 AACGCCCGCATACTCGTTTCATGGGTTGA
130 AACGCCCGCACACTCGTTTCATGGGTTGA
* * *
17694269 CTTAGGTATACGGAGTTCATTCCCAGTCTAAGAT-AGGGTTAGACCGAGGGTTGCTGCAACAGGA
1 CTTAGGCATACGGAGTTCATTCCCA-TCTAAGATCA-GATCAGACCGAGGGTTGCTGCAACAGGA
* * * * **
17694333 TC-GACAGCACATAAAGGGGGACCTGATCAATCCTCGGCTTGCGCATCCCGCCCCTCTGG-CGAC
64 TCAG-CAGCACATAAAGGGGGACCCGACCAATCCCCGGCTTACGCATCCAACCCCTCTGGTCGAC
* *
17694396 TGAGCTCCCGCACACTCGTTTCATGGGTTGA
128 TGAACGCCCGCACACTCGTTTCATGGGTTGA
17694427 CTTAGGCATACGGAGTTCATTCCCAATCTAAG
1 CTTAGGCATACGGAGTTCATTCCC-ATCTAAG
17694459 CATACGAAGT
Statistics
Matches: 165, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
158 86 0.52
159 79 0.48
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (158 bp):
CTTAGGCATACGGAGTTCATTCCCATCTAAGATCAGATCAGACCGAGGGTTGCTGCAACAGGATC
AGCAGCACATAAAGGGGGACCCGACCAATCCCCGGCTTACGCATCCAACCCCTCTGGTCGACTGA
ACGCCCGCACACTCGTTTCATGGGTTGA
Found at i:17694462 original size:26 final size:26
Alignment explanation
Indices: 17694432--17694484 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17694422 GTTGACTTAG
*
17694432 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
17694458 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17694484 G
1 G
17694485 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17695773 original size:894 final size:893
Alignment explanation
Indices: 17694681--17697651 Score: 4293
Period size: 894 Copynumber: 3.3 Consensus size: 893
17694671 GCCCTTTATT
* * * * * * * *
17694681 TGAATTCTTTTGTGCATTCCTACAAAAATACATGGATCACATCTACCAACTTTGGGGCCAAAACT
1 TGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
17694746 CCTTCCGAAATAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAA
66 CCTTCCGAAAAAATTTTAAAAAATCCCGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
*
17694811 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
17694876 ATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
196 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
17694941 CCACGACTTGCGCATCCTGTCTCTCTGGCCAGTATACTGCCCGCCTGCCCGCTCGTTTCGTCGGT
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * *
17695006 TGGCTTAGGCATACGGAGTTCATTCCAAGTCTAACATCGGACTGGACTGAGGGTTGCGGCAGCAG
326 TGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACTGAGGGTTG-GGCAGCAG
* * * * *
17695071 GATCGGCAGCACGCAGAGGGGGACCCGCTTGATCCCCGGATTG-GCGTCCTGCCCCAT-TGGCCG
390 GATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCC-TCTGGCCG
* *
17695134 GCTGAGCACCCGCACACTCGTTTCGTGGGTAGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
454 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
* * * *
17695199 CATACGAAGTTCATTCCCATTCCAAGATCGGACCGGACTGAGGGTTGCAACAGCACATGCTGGGC
519 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * *
17695264 TCGGGCATGTCCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGTAGGAGCATCGCCGGAGAA
584 TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCGCCGGAGAA
* ** * * *
17695329 CCTGACCGGTGGCATTAGGGTTCCGGCAATTGGGGGGGCCTGGGGGGGTGTGCGCACATGATGTG
649 CTTGACCGACGGCATTAGGGTTCCGACAATCGGGGGGGCC-GAGGGGGTGTGCGCACATGATGTG
* * *
17695394 GGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATTAAACCTCGAGAACTCAC
713 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCAAGAACTCAC
* * *
17695459 ACCCCCTTAAACAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
777 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17695524 GGGGACAATTTTTTCAAATGGTCACTAAATTTGTACACTTTGAGTTTTTAGC
842 GGGGACACTTTTTTCAAATGGTCACAAAATTTGTACACTTTGAGTTTTTAGC
* *
17695576 TGAA-TGTTTTATGCATTCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
1 TGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** * *
17695640 CCTTTCGAAAAAATTTTAAAAAATCCCGAGCCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
66 CCTTCCGAAAAAATTTTAAAAAATCCCGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
17695705 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
17695770 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
196 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
17695835 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCTCGCCCGCCCGCTCGTTTCGTCAGT
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
17695900 TGGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGCAG
326 TGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACTGAGGGTT-GGGCAGCAG
*
17695965 GATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGA
390 GATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* * *
17696030 CTGAGCAGCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGC
455 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
* ** ** *
17696095 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTATGGCAGCACATGCTGGGCT
520 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCT
* ** * *
17696160 CAAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGAGGCACCATCGCAGGAGCATCGCCGGAGAAC
585 CGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCGCCGGAGAAC
* * * *
17696225 TTGACCGACGGCATTCGGGTTTCGACGATCGGGGGGGCCGAGGGGATGTGCGCACATGATGTGTG
650 TTGACCGACGGCATTAGGGTTCCGACAATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGTG
* * * *
17696290 ATGGGTGCTGCTACTTGGCCCTCATATTGGCCCCTAT-CCTCATGAAACCTCAAGAACTCATACC
715 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * * * *
17696354 CACTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAATAGTCATTAAAGTGTCTGAAATGGG
780 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
17696419 GACACTTTTTTCTAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGC
845 GACACTTTTTTCAAATGGTCACAAAA-TTTGTACACTTTGAGTTTTTAGC
* **
17696469 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGGCCAATGC
1 TGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAAC
* * * *
17696534 TCCTTCCGAAAAAGTTTTGAAAAATCCCGAAACGCAAAAAGTTTTGAAAATCGTGAAAAAAAGAA
65 TCCTTCCGAAAAAATTTTAAAAAATCCCGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAA
* *
17696599 AACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
130 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
17696664 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
195 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * ** * * * *
17696729 TCCACGGCTTGCGCAACCCGTCTTTCTGGACGGCGTAGTGCCCGTGCCCACCCACTTGTTTCGTT
260 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCC--GCCCGCCCGCTCGTTTCGTC
* * * * * *
17696794 GGTTGGCTTAGGTATACGAAGTTCATTCCCAGTCAAAGATCAGACCGGACTGAGGGTTGTGCTGG
323 GGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACTGAGGGTTGGGC-AG
* ** * * * **
17696859 CAGGATTGGTAGCACATAGAGGGGGACTCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGC
387 CAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
* * *
17696924 CGGCTGAGCGCCCGTACGCTCGTTTCGTAGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCT
452 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCT
* * * *
17696988 AAGCATACGTAGTTCATTCCCAGTCTAAGATCGGACCGGACCGGGGGTTGCGATAACACATGCTG
516 AAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTG
* *
17697053 GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
581 GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCGCCGGA
* * * * * *
17697118 GAACTTGACCGACGGCATTGGGGTTCC-AAAGATCGGGGGGGCCGAAGGGGTGTGCGCCCTTGTT
646 GAACTTGACCGACGGCATTAGGGTTCCGACA-ATCGGGGGGGCCGAGGGGGTGTGCGCACATGAT
* * * *
17697182 GTATGATTGGTGCTAGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCAAGAACT
710 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACT
* *
17697247 CACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGA
774 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
17697312 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-CTTTCGAGTTTTTAGC
839 AATGGGGACACTTTTTTCAAATGGTCACAAAAT-TTGTACACTTT-GAGTTTTTAGC
* * *
17697368 TGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAAA
1 TGAATTTTTTTATGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
*
17697433 TCCTTCCAAAAAAATTTTAAAAAAT-CCGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAA
65 TCCTTCCGAAAAAATTTTAAAAAATCCCGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAA
* * * *
17697497 AACGAGTCGTGTTCCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGC
130 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
17697562 CACAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGA
195 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
17697627 TCCACGGCTTGCGCATCCCGTCTCT
260 TCCACGGCTTGCGCATCCCGTCTCT
17697652 TTGACTACCG
Statistics
Matches: 1859, Mismatches: 201, Indels: 29
0.89 0.10 0.01
Matches are distributed among these distances:
892 104 0.06
893 29 0.02
894 492 0.26
895 457 0.25
896 2 0.00
897 379 0.20
898 191 0.10
899 176 0.09
900 29 0.02
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (893 bp):
TGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCGAAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACTGAGGGTTGGGCAGCAGG
ATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
TACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
GAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCGCCGGAGAACT
TGACCGACGGCATTAGGGTTCCGACAATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGTGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATTTGTACACTTTGAGTTTTTAGC
Found at i:17696096 original size:26 final size:26
Alignment explanation
Indices: 17696067--17696119 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17696057 GTTGACTTAG
*
17696067 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17696093 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17696119 G
1 G
17696120 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17697001 original size:26 final size:26
Alignment explanation
Indices: 17696964--17697016 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17696954 GTTGACTTAG
17696964 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17696990 GCATAC-GTAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
17697016 G
1 G
17697017 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17699730 original size:26 final size:26
Alignment explanation
Indices: 17699694--17699746 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17699684 GTTGACTTTG
* *
17699694 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17699720 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17699746 G
1 G
17699747 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17701014 original size:26 final size:26
Alignment explanation
Indices: 17700972--17701024 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17700962 GTTAACTTAG
* *
17700972 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTAATTCACAGTCTAA
* *
17700998 GCATACGGTGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCACAGTCTAA
17701024 G
1 G
17701025 ATCAGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCACAGTCTAA
Found at i:17703331 original size:866 final size:867
Alignment explanation
Indices: 17701106--17709784 Score: 9300
Period size: 895 Copynumber: 9.9 Consensus size: 867
17701096 TCGGCGCACT
* * * * * *
17701106 ATCGCCGGAGAACCTGACTGGTGGCATTGGTGTTCCGAAGATCGGGGGGTCC-GGGGGGTGTGCG
1 ATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
* *
17701170 CACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAAACT
66 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
**
17701235 CGAGAACTCTTACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
131 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
17701300 GTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGTT
196 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * *
17701365 GAATTTTTTTGTGCATGCCAAAAAAATATACGAGGATCACGTGTAACAAGTTTGGGGTCAAAACT
261 GAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
17701430 CCTTTCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
325 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
17701495 ACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
17701560 ATAAAAATGGCAATGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
455 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
17701625 CCACGGCTTGCGCATCCCGTCTCTCCGGCTGGCGTAGTGCCCG-C-CCGCTCATTTCGTCAGTTG
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCGCTCGTTTCGTCAGTTG
* * * * * *
17701688 GCTTAGGCATACAGAGTTCATTCCCAGTGTAAGATTGGACCAGACCGAGGGTTACGGCAGCAAGA
585 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGA
* * * * ** * * *
17701753 TCGACAGCACGCGGTGGGGGGCAAGACCGATTCCTGGCTTGCGCATCCCGGCCCTCTGGTCGGGT
650 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCC-GCCCTCTGGCCGGCT
* * * **
17701818 GAGCGCCCGCATTG-TCGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATTTTCAGTCTAAGAT
714 GAGCGCCCGCA-CGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
17701882 CGGACTGGACCGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
778 CAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
** * **
17701947 TTCACCGAGGCACCATCACCGGAGC
843 TTCGTCGGGGCACCATCGTCGGAGC
* * * *
17701972 ATCG-TCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGCGCC-GGGGGGTGTGC
1 ATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* * * *
17702035 ACACATGATGTGTGGTGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
17702100 TCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGTCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
17702165 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
17702229 TGAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTTGGGGCCAAAAC
260 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAAC
* * * * * *
17702294 TCTTTTCGAAAAAATTTTAAAAAATCCCGTATCATAAAAAGTTTCAAAAATCATGAAAAATAGAA
324 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
17702359 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACTAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
17702424 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGA
454 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * **
17702489 TCGACTG-TTGCGCATCCCGTCTCTCTGGTCGGTGTAGTGCCC-CCTCC-CTCGTTTCGTCAAAT
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCGCTCGTTTCGTCAGTT
* * * *
17702551 GGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGG
584 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGG
* * * * * *
17702616 ATCGGTAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCACATCTCGCCTTCTGGCTGGCT
649 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCTCTGGCCGGCT
** * * *
17702681 GAGTACCCGCACGTTCATTTCGTGGGTTCACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATC
714 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATC
* * * * *
17702746 AGACCGAACCGAGGGTTGTGACAGCACATGCTGGGCTCAGGCATGTCCTGGTGCCGTATTTTTCT
779 AGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
*
17702811 TCGTCGGGGCACTATCGTCGGAGC
844 TCGTCGGGGCACCATCGTCGGAGC
** * * * * * *
17702835 ATCGCTGGAGAACCTGACTAGCGGCATTAGGCTTCCGATGATCGGGGGGGCCTAGGGGGTTGTAC
1 ATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGC
17702900 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
17702964 TCGAGAACTCACACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCTAGTAGCCATTA
130 TCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
17703029 AAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATC-CTTCGAGTTTTTT
194 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-CACTTCGAG-TTTTT
* * *
17703093 AGCTGAATTGTTTTATGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
257 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * ** *
17703158 ACTTCTTCCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATTGTTAAAAATAG
322 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* *
17703223 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAGTTTACAA
387 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* **
17703288 GCCATAAAAATGTCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
452 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * **
17703353 GATCCACGGCTTACGTATCCTGTCTCTCTGGTCAACGTAGTGCTCGACCGCCCATCCGCCCGTTC
517 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCG-CC-TCCG--C--TC
* * * * *
17703418 GTTTCATCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGT
572 GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * ** * * *
17703483 TCCAACAACAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCC-GGTTTGCACATCCTGCC
637 TGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCG-C
* * * * *
17703547 CCTCTGACCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTAGACTTAGGCATATGGAGTTCATTC
701 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTC
* * * * * *
17703612 CCAGTCTAAGATCGGATC-AGACCGAGGGTTGTGGCAGCACATACGGGGCTCAGGCATGTGCTGG
766 CCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * **
17703676 TGTCACATTTTTCATCACCGGGGCACCATCGTCGGAGC
830 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
** * * * *
17703714 ATCGCCAGAGAACCTGACCGGCAGCATTGGGGTTTCGGCAATCGGGGGGGCCGGGGGGGTGTGCG
1 ATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
* * * * *
17703779 CACATCATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTTATTAAACCT
66 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
17703844 CGAGAACTCACACTCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
131 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
17703909 GTGTCTGAAATCGGGACGCTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
196 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * *
17703974 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAACAATTTTGGGGCCAACACCC
261 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
17704039 CTTCCAAAAAAATTTTAAAAAATCCCAAATCC-CAAAAAGTTTCAAAAATCATGAAAAATAGAAA
326 CTTCCGAAAAAATTTTAAAAAATCTCGAA-CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
17704103 ACGGGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
17704168 ATAAAAATGGCATTGGCATGCAGAAATCTGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
455 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
17704233 CCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGTCCGCTTGTTTCGT
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCC--TCCGCTCGTTTCGT
* * * *
17704298 C-GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTG-TAG
579 CAG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-
** * ** * **
17704361 CAGCAGGATCACCAGCACGCAGAGAGGGACCCGATTGATCCCCGATTTGCGCATCCCGCCC-CTG
642 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCTCTG
* * * * * *
17704425 TAACCGGGTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT-ACGAGTTCGTTCCCAG
707 --GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAG
* * *
17704489 TCTAAGCATACGAAGTTCATTCCAAGTCTAAGATCGGATTGGACCGAAGGTTGCGGTAGCAAATG
770 TCTAAG-AT-C--AG---------A--C------C-GA----ACCGAGGGTTGCGGCAGCACATG
* * * *
17704554 TTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCA---T-----C
809 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
* ** *
17704605 AT--C-GGAGAACCTAACCGGTAGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGCGGTGTG
1 ATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG-GGTGTG
* *
17704667 CGCACAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
64 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
17704732 CTTGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTA
129 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
17704797 AAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
194 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
17704862 CTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGCGCCAAAA-
259 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
*
17704926 --C-TCC----------T------T-T-----C----------T--AAAATCGTGAAAAATAGAA
324 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
17704954 AACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGT
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
17705019 CATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGA
454 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
17705084 TCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCACCCGCTCGTTTCGTCGG
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-TCCGCTCGTTTCGTCAG
* * *
17705149 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCCA-ACCGAGGGTTGTGGCAGC
582 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCGACAGC
* * * *
17705213 AGGATAGGCAGCACGCAGAGGGGGACCCGATCGATCCCTAGCTTGTGCATCCCGCCCCTCTGGCC
646 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCG-CCCTCTGGCC
* * * * *
17705278 GACTGAGCACCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACA-GAGTTCATTCCTAGTCTA
710 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-AGGAGTTCATTCCCAGTCT-
* * * * * *
17705342 CGCATATGGAGTTCATTACCAATCTAAGATTGGACCGGACTGAGGGCTACGGTAGCACGTGTTGG
773 ---A-A--GA--TCA-GA-C---C---GA----A-C---C-GAGGGTTGCGGCAGCACATGCTGG
* * * *
17705407 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGAGGCACCATCGTCAGAGC
813 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
* * * * * * * * * *
17705462 ATCGCCGAAAAATCTAACCGACGACATTGGGGTTCTGGCGATCGGGGGGGTC-GGGGGGTGTGCG
1 ATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
* *
17705526 CACATGATGTGCCATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCT
66 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
17705591 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
131 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
17705656 GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCT
196 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * * * *
17705721 GAATTTTTCTGTGCATGCTATCAGAAATACAAGGATCACGTCCACCATGTTTCGGGCCAAAAATC
261 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* ** *
17705786 CTTTCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
326 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * * * *
17705851 CGAGTCATCTTGCCATGAAACTTCACGTGTAGGCTTAAGGGTCCATTATAAGAATTTACAAGCCA
391 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
17705916 -AAAAATTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCAAT
456 TAAAAA-TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
17705980 CCACGGCTTGCGCATCCCATCTCTTTGGCCGGCGTCGTGTTCGCCCGACCCGTCTGCTCGCTCGT
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT--AG-T-GCCCG---C--CT-C-CGCTCGT
* * * * ** *
17706045 TTCATCATTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGAAT-GGACTGGACTGAGGGTT
574 TTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCAGACCGAGGGTT
* * * ** **
17706109 GCAACAGCAGGATAGGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCTTGCCC
638 GCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCG-CC
* * *
17706174 CTCTGGCTGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
702 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCC
* *
17706239 CAGTCTAAGCATACGAAGTTCATTCCCATTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAC
767 CAGTCTAAG-AT-C--AG---------A--C------C-GA----ACCGAGGGTTGCGGCAGCAC
* *
17706304 ATGCTAGGCTCGGGCACGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-C----C
806 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
* * * * *
17706361 A------GAGAACCTGACCGGCAGCACTAGGGTTCTG-GGATCGGGGGGGCCGGGGGGGGGGTGT
1 ATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGGTGT
* * * *
17706419 GCACACATGATGTGCGATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCAATCCCTCCTCAAA
63 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
17706484 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATT
128 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
17706549 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
193 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * **
17706614 GCTGAATTGTTTTGTGCTTGGCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTAAAAA
258 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
17706679 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
323 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* *
17706744 AAACGAGTCGTCTTGCCATGAAACTTCACGTGCAGGCCTAAGGGACCATTGT-TGAATTTACAAG
388 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
17706808 CCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAA-CCACCTGCCACCCTATCG
453 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
17706872 ATCCACGACTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGGCCGCCCGCCCACTCGTTTC
518 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCC-TCCG----CTCGTTTC
* *** * * * *
17706937 GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCAAGGATTGCGG
577 GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA
* * * * * * *
17707002 CAGCAAGATCGGTAGCAACGTAGAGGGGGACCCGGCCGATTCC-GGCTT-AGCATCCCACCCCTC
642 CAGCAGGATCGGCAGC-ACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCC-GCCCTC
* * *
17707065 TGGTCGGATGAGCGCCCGCAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTGCAG
705 TGGCCGGCTGAGCGCCCGC-ACGCTCGTTTCGTGGGTTGAC-T-----T----AG------GCA-
* * * * * * *
17707130 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATGA-ACTGAACCAAGAGTTCCGACAGCAAATG
752 --TAAG-----G-AGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATG
* * *
17707194 CTGGGCTCGGGCATATGCTGGTGTCGCATTTTTCTTCAT-GGGGCACCATCGTCGGAGC
809 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
** * * ** *** * * * *
17707252 ATCAATCGGAGAACCTAACCGGCGGCATTGGGGTTCTGGTGATC-GCATGGTCGGGGGGATATAC
1 ATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* * * * *
17707316 GGACATGATGTGCAATGGGTGCTGGTACTCGACCCTTATATTGGCCCCCTATCCCACATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
17707381 TCAAGAACTCAGACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
17707446 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
17707511 TGAATTTTTTTGTGCAAGCCAATAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACT
260 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
17707576 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAA
325 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * * *
17707641 ACGGGTCATCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * * *
17707706 ATAAGAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAAGCCACCTACCACCCTATTGAT
455 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * ** *
17707771 CCACGGCTTGCGCATCTCGTCTTTCTGGCCAACGTAGTGCCCG-C-CCGCTCGTTTTGTCAGTTG
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCGCTCGTTTCGTCAGTTG
* * * * *
17707834 GCTTAGGCATACGGTGTTCATTCCCAGTCTAAGTTCGGACCAGACTGAGGGTTGTGACAGTAGGA
585 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGA
* * * * *
17707899 TCGGCAGCACGCAGAAGGGGACCCGACCAAT-CCTCGGCTTACGCATCCCGCCCCTTTGGCCGAC
650 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCG-CCCTCTGGCCGGC
* * * * *
17707963 TGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
713 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAG-A
*
17708028 TACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTC
777 T-C--AG---A----C---C--------GA----ACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
17708093 GGGCATTTGCTAGTGCCGCATTTTTCTTCATCGGGGCACGATCGTCGGAGC
817 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
* * *
17708144 ATCG-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAAGAGTGGTTGT
1 ATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGGTGT
* *
17708208 ACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAT
63 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
17708273 CCTAGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATT
128 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
17708338 AAAGTTTCTAAAATGGGAACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
193 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * * *
17708403 GGTGAATTTTTTTGTGAATGCCAAAAAAAATACAAGGATAATGTCTACCAAGTTTGGGGTCAAAA
258 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * **
17708468 CTCCTTCC-AAAAATTTTTAAAAAAATCT-GAACCGCAAAAAGTTTTGAAAATCATTGAAAAATA
323 CTCCTTCCGAAAAAATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATA
* * *
17708531 GAAAACGAGTCATCCTTGCCAAGAACCTTCACGTGAAGGCTTAAGGGA-CATTGTATGAAATTTA
386 GAAAACGAGTCGT-CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-AATTTA
** *
17708595 CAAGCCATAAAAAATGGCATTGGGCTGGCAGATCATATGAAGATGTGCCTAAACCCA-CTAACCA
449 CAAGCCAT-AAAAATGGCATT-GGCACGCAGA-AATATGAAGATGTGCCTAAACCCACCT-ACCA
* * * *
17708659 CCCTATCGAATCCACGGCTTGGCGTATCTCGTCTCTCTGGCCCGCG-AGTGCCCG-C-CCGCTCA
510 CCCTATCG-ATCCACGGCTT-GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCGCTCG
* * ** * ** *
17708721 TTTAGTCGGTTGGCTTAGGGCAATACGGAGTTCATTCTTAGTGGTAAGATTCAAACTATGACCGA
573 TTTCGTCAGTTGGCTTA-GGC-ATACGGAGTTCATTCCCAGT-CTAAGA-TCGGACCA-GACCGA
* * * * *
17708786 GGGTTGCCCCGGTAAAGCCAGGGATCCGGTAGCACGCAGAGGGGGCAACCAGATCAATTCCC-GG
633 GGGTTG---C-G-ACAG-CA-GGAT-CGGCAGCACGCAGAGGGGG--ACCCGACCGA-TCCCTGG
* ** * * * * * * ****
17708850 CTTGCGC-T--CG--TTCGTGGTTTGACTTATG-GCATACGGA-GTTC-ATTCCCAAG-T--C-T
687 CTTGCGCATCCCGCCCTC-TGG-CCGGCTGA-GCGC--CCGCACGCTCGTTTCGTGGGTTGACTT
* * * * *
17708903 AAGCATACA-GAGTTCATT-CCA-TCTAAGATC-GAACCGGACTGAGGGTTGCGACAGCACATAC
747 AGGCATA-AGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCGAGGGTTGCGGCAGCACATGC
* * *
17708964 TGGGCTTGGGCATGTGCTGGTGCCACATTTCTCTTCGTCGGGGCACCA---T-----C
810 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
** * * * *
17709014 AT--C-GGAGAACAAGACCGACGGCATT-GGGTTCCGGCTATC-GGGGGGCCCGGGGGGTGTGCG
1 ATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
* * *
17709074 CACATGATGTGTGATGGGTGCTGATACTTGGCCCTTATATT-GCCCCCTATTCCTCATCAAACCT
66 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
17709138 TGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGAAGCCATTAAA
131 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
17709203 GTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
196 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
17709268 GAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACAC
261 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* *
17709333 CTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAA
326 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAA
* *
17709397 ACGAGTCGTCTTGCCATTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
17709462 ATAAAAATGGCATTGGCACGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCAATC-AT
455 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
17709526 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCTTGCCCGCTCGTTTCGTCAGT
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT--CCGCTCGTTTCGTCAGT
* * * ** * * * *
17709591 TGGCTTAGGCATACGGAGTTCATTCCCAATTTAAGATCGAAGTAGA-TGAAGGGCTGCGGCAACA
583 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-AGGGTTGCGACAGCA
* * * *
17709655 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCATCCCTCTGGCCG
647 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCC-GCCCTCTGGCCG
* *
17709720 ACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACA-GAGTTCATTCCCAGTCTAA
711 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-AGGAGTTCATTCCCAGTCTAA
17709784 G
775 G
17709785 CATACGGAGT
Statistics
Matches: 6621, Mismatches: 868, Indels: 659
0.81 0.11 0.08
Matches are distributed among these distances:
842 3 0.00
844 11 0.00
845 17 0.00
846 2 0.00
847 20 0.00
848 165 0.02
849 95 0.01
850 9 0.00
851 3 0.00
852 180 0.03
853 19 0.00
854 7 0.00
855 36 0.01
856 27 0.00
857 255 0.04
858 53 0.01
859 14 0.00
860 69 0.01
861 46 0.01
862 242 0.04
863 252 0.04
864 212 0.03
865 392 0.06
866 431 0.07
867 99 0.01
868 1 0.00
869 1 0.00
870 7 0.00
871 3 0.00
872 6 0.00
873 120 0.02
874 58 0.01
875 3 0.00
876 4 0.00
877 280 0.04
878 226 0.03
879 313 0.05
881 1 0.00
882 1 0.00
883 2 0.00
885 2 0.00
886 18 0.00
887 56 0.01
888 87 0.01
889 200 0.03
890 296 0.04
891 98 0.01
892 38 0.01
893 57 0.01
894 343 0.05
895 613 0.09
896 430 0.06
897 67 0.01
898 65 0.01
899 117 0.02
900 26 0.00
901 19 0.00
902 5 0.00
903 11 0.00
904 254 0.04
905 8 0.00
906 16 0.00
907 2 0.00
908 7 0.00
909 13 0.00
910 13 0.00
911 13 0.00
912 20 0.00
913 4 0.00
914 35 0.01
915 1 0.00
916 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (867 bp):
ATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCCGCTCGTTTCGTCAGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGAT
CGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAG
ACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
GTCGGGGCACCATCGTCGGAGC
Found at i:17704511 original size:26 final size:25
Alignment explanation
Indices: 17704469--17704520 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
17704459 GTTGACTTAG
* *
17704469 GCATACGAGTTCGTTCCCAGTCTAA
1 GCATACGAGTTCATTCCAAGTCTAA
17704494 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACG-AGTTCATTCCAAGTCTAA
17704520 G
1 G
17704521 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCAAGTCTAA
Found at i:17706258 original size:26 final size:26
Alignment explanation
Indices: 17706221--17706273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17706211 GTTGACTTAG
*
17706221 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17706247 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17706273 G
1 G
17706274 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17707139 original size:25 final size:26
Alignment explanation
Indices: 17707110--17707161 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17707100 GTTGACTTAG
* *
17707110 GCATACGGAGTTCATT-GCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17707135 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17707161 G
1 G
17707162 ATGAACTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17708029 original size:26 final size:26
Alignment explanation
Indices: 17707999--17708051 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17707989 GTTGACTTAG
*
17707999 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17708025 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17708051 G
1 G
17708052 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17709794 original size:26 final size:26
Alignment explanation
Indices: 17709758--17709810 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17709748 GTTGACTTAG
17709758 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
17709784 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17709810 G
1 G
17709811 ATCGTCGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17711471 original size:26 final size:26
Alignment explanation
Indices: 17711435--17711487 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17711425 GTTGACTTAG
17711435 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
17711461 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17711487 G
1 G
17711488 ATCGTCGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17716381 original size:866 final size:863
Alignment explanation
Indices: 17714530--17718813 Score: 4996
Period size: 866 Copynumber: 4.9 Consensus size: 863
17714520 CGTCGATTGG
* * * ** *
17714530 CTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATG
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATG
* * * ** * *
17714595 CTGGCCTCGGGCATTTGCTGGTACCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATTGTC
66 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT--T-GTCG-A--A--G-C--ATCA--CT-
* * * *
17714660 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GAGGGGCCGGAGGGGTGTGTGCACATG
117 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
* * * *
17714724 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCAATCCCTCATCAAACCTCAAGCA
182 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
17714789 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
247 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
17714854 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTT
312 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTT
* * *
17714919 TTTTGTGCATGCCAACAAAAATCCAAGGATCACGTCTACCAAGTTTAGGGCCAAAACCCCTTCCA
377 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * *
17714984 AAAAAACTTTAAAAAATCCTGAACTGCAAAACGTTTCAAAAATCATGAAAAATATAAAACTCGTC
442 AAAAAACTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATATAAAACTAGTC
*
17715049 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAA
507 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
17715114 TGGCATTGGCACAGAGAAATATGAAGATGTGCCTAAACCCCACCGACCACCCTATCGATCCACAG
572 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACAG
*
17715179 CTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTTCCTGCCCTCCCGCCCGTCCGCTCGTTTCGTC
636 CTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTTCCTGCCCGCCCGCCCG-CCGCTCGTTTCGTC
* *
17715243 GATT-ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
699 GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* * * * *
17715307 TAGGATCGACAGCATGCAGAGGGGGACCCGGTCGGTCCCCGACTTGCGCATCCCGCCCTTCTGGC
764 CAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCTCGCCCTTCTGGC
* *
17715372 CGGTTGAGCGCCCGAACGCTCATTTCATGGGTTGA
829 CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGA
* * * *
17715407 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGTTTGCGGCAGCATATG
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATG
* * * * *
17715472 CTGGGCTCAGGCATGTGATGGTGTCGTATTTTCCTTCGTCGAAGCATCACTGGAGAACCTGACCG
66 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGAAGCATCACTGGAGAACCTGACCG
* * * *
17715537 ACGGCATTGGGGTACTGACGATCGGGGGGGCCGGGCGGGGTGTGCGCCCATGATGTACGATGGGT
131 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGT
*
17715602 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
17715667 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAATAGCCTTTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
17715732 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTTGTGCATGC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAA-TTTTTTTGTGCATGC
* * *
17715797 CAACAAAAATCCAAGGATCACGTCTACCAAGTTTAGGGCCAAAACCCCTTCCAAAAAAACTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAACTTTAA
* * *
17715862 AAAATCTTGAACTGCAAAACGTTTCGAAAATCATGAAAAATATAAAACTCGTCGTCTTGCCATGA
454 AAAATCTTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATATAAAACTAGTCGTCTTGCCATGA
* *
17715927 AACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATATAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
17715992 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCG
584 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCG
* * * *
17716057 TCTCTCTGGCCAGCGTAGTTCCTGCCTGCCCGCCTGTTCGCTCGTTTCGTCGATTAGCTTAGGCA
649 TCTCTCTGGCCAGCGTAGTTCCTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGATTGGCTTAGGCA
* *
17716122 TACGGAGGTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
713 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* ** * * *
17716187 TGCAGAGGGGGACCCGGTCGGTCCCCGGCTTGCGCATCTCGCCCCTCTGGCTGGCTGAGCGCCTG
778 TGCAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCTCGCCCTTCTGGCCGGCTGAGCGCCCG
17716252 CACGCTCATTTCATGGGTTGA
843 CACGCTCATTTCATGGGTTGA
* *
17716273 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGTGGCAGCACATG
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATG
* *
17716338 CTGGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTTGTCGAAGCATCACCGGAGAACCTGACCG
66 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGAAGCATCACTGGAGAACCTGACCG
* * * * *
17716403 ACAGCATTGGGGTACTGACGATCGGGGGGGCCGGGTGGGGTGTGCGCCCATGATGTACGATGGGT
131 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGT
* *
17716468 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * * * *
17716533 AAAAAGCATTTGAGATTTTATAGGTTTGCTGCTAGCAGCCTTTAAAGTGTTTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
17716598 TTTTTTCAAATGGTCACAAAATCTCGTACACTTCGTA-TTTTTAGCTGAATTTTTTTGTGGATGC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-ACTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
17716662 CAACACAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAA-TTT-T
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAACTTTAA
* * * *
17716725 AAAATCTTTGAACCCAT-AAAAAAGTTTCCGTCAAAATCATGAAAAATA-GAAACGAGTCCGTCT
454 AAAATC-TTGAA--C-TGCAAAAAGTTT-C--AAAAATCATGAAAAATATAAAACTAGT-CGTCT
* * * *
17716788 TG-CATGAAACTTCACGTGAAAGTTTAAGTGACCGA-TGTATGAATTTAC-A--CATTAAAAAAG
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-ATTGTATGAATTTACAAGCCA-TAAAAATG
17716848 GCATTGGCACATAGAAATATGAAGATGTGCCTAAAGCCCACCTACCACCGTCTATCGATCCACGC
574 GCATTGGCACATAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACC--CTATCGATCCA--C
** * *
17716913 AGGCTTCGTTTTTTTTACGCATCCCGTGTCTCTCT-GATAG-GTCG-T-ATGCCCGCCTCTG--C
634 A-GCTT-G---------CGCATCCC--GTCTCTCTGGCCAGCGTAGTTCCTGCCCGCC-C-GCCC
* * *
17716972 -CCGCT-GTTTCGTCG-GTGGCTTA-GCAATACGGAGTTTATT-GCAGTCTAAGATTGGCAG-CG
684 GCCGCTCGTTTCGTCGATTGGCTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGA-T--CAGAC-
* * * * * ** *
17717031 CGGATCGAGGGTTGC-GTAGCAGGATCGGCAGCGATGTAGAGGAGAGACCTGCCCGAT-CCCAGC
744 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGC-ATGCAGAGG-GGGACCCGGTCGATCCCCAAC
** * * * *
17717094 -TGCGCAT-TCAAACCGTCTGGCCGGTTGAGCGCCCGCACGCTCGTTGT-GTGGGTTG-
807 TTGCGCATCTC-GCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCATT-TCATGGGTTGA
* *
17717149 -TTTGGC-TAC-GAG-TC-TTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCACATG
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATG
* * * * * * * ** *
17717209 CTGGGCTCGAGCAAGTGCTGGGGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGAACTTGA
66 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTC---GAAGCATCACTGGAGAACCTGA
* * *
17717274 CGGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGCGTGTGCGCACATGATGTGCAATG
128 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATG
* *
17717339 GGTGCTGGTACTTGGCCCTTAT-TTCAGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCC
192 GGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
17717403 CCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
256 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
** * *
17717468 ACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGC-TTTTAGGTGAATTTTTTTGTGT
321 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-CTTTTTAGCTGAATTTTTTTGTGC
* * * * *
17717532 AGGACAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATT
385 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAACT
* * * *
17717596 TTAAAAAATCCTGAACTGCACAAAGTTTCAAAAATCATGAAAAATAGAAAA-TGAGTCATCTTGC
450 TTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATATAAAACT-AGTCGTCTTGC
17717660 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
514 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
17717725 GGCA-AGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACAGCTTGCAC
579 GGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
* * * * * * * * * *
17717789 ATCCCGTCTCTTTGGCCGGTGTAGTGCCCGCCCGTCTGCCCGCCAACTCGTTTTGTC-AGCTGGC
643 ATCCCGTCTCTCTGGCCAGCGTAGTTCCTGCCCGCCCGCCCGCC-GCTCGTTTCGTCGA-TTGGC
* * * * * * * **
17717853 TTAAGCATACGAAGTTCATTCCTACTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGTGGGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * **
17717918 GGCAGCACGCATAGGGGGA-CCTGACTGATCCCCAACTTGCGCATC-CGCCCTTCTGGCTTGCTG
771 GGCAGCATGCAGAGGGGGACCCGGTC-GATCCCCAACTTGCGCATCTCGCCCTTCTGGCCGGCTG
** * *
17717981 AGCGCCCGCATACTCGTTTCGTGGGTTGA
835 AGCGCCCGCACGCTCATTTCATGGGTTGA
17718010 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCAGAC
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-TC---G----GA-
* * **
17718075 CAGATCGAGGGTTGTGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCAC
44 C----CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT---
** * *
17718140 TGAGGCACCATCGTCGGTGCATCGATGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGG
102 TGTCG-A--A--G-C-AT-CA-C--TGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* * * *
17718205 GGGGGCCGGGGGGGTGTACGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTATATTGACC
156 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
17718270 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTTAATG-GCATTTGAGATTTTACAGGT
221 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGT
*
17718334 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTGAAATGGTCACAAAATCT
285 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCT
* * * * *
17718399 CGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAAATACAAGGATCATGTCT
349 TGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** * *
17718464 ACCAAGTTTGGGGCCAAAACTCCTTCCGAGCAAAATTTTAAAAAAT-TTCAAACAT-CAAAAAGT
414 ACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAACTTTAAAAAATCTT-GAAC-TGCAAAAAGT
** * * *
17718527 TTCAAAAATTGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
476 TTCAAAAATCATGAAAAATATAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
17718592 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTACCT
541 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
* * ** * * *
17718657 AAACCCACCTACGACCCTATCGATCCTCAGCTTATGCATCCTGTCTCTCTGGCCGGCGTAGTGCC
606 AAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTTCC
* *
17718722 TGCCCGCCCG--C-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
671 TGCCCGCCCGCCCGCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
17718784 GATTGGACCGGACCAAGGGTTACGGCAGCA
736 GATCAGACCGGACCGAGGGTTGCGGCAGCA
17718814 CATGTTGGCC
Statistics
Matches: 2953, Mismatches: 314, Indels: 256
0.84 0.09 0.07
Matches are distributed among these distances:
854 7 0.00
855 2 0.00
856 11 0.00
858 9 0.00
859 9 0.00
860 63 0.02
861 31 0.01
862 25 0.01
863 53 0.02
864 21 0.01
865 353 0.12
866 798 0.27
867 21 0.01
868 49 0.02
869 71 0.02
870 48 0.02
871 97 0.03
872 54 0.02
873 64 0.02
874 259 0.09
875 23 0.01
876 21 0.01
877 154 0.05
878 34 0.01
879 10 0.00
880 9 0.00
881 2 0.00
882 12 0.00
883 4 0.00
884 8 0.00
887 2 0.00
888 1 0.00
892 51 0.02
895 2 0.00
898 1 0.00
899 1 0.00
900 2 0.00
901 63 0.02
902 141 0.05
903 111 0.04
904 47 0.02
905 207 0.07
906 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (863 bp):
CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGAAGCATCACTGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAACTTTAAAA
AATCTTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATATAAAACTAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTC
TCTCTGGCCAGCGTAGTTCCTGCCCGCCCGCCCGCCGCTCGTTTCGTCGATTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATGC
AGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCTCGCCCTTCTGGCCGGCTGAGCGCCCGCAC
GCTCATTTCATGGGTTGA
Found at i:17718046 original size:26 final size:26
Alignment explanation
Indices: 17718015--17718067 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17718005 GTTGACTTAG
17718015 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
17718041 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17718067 G
1 G
17718068 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.