genome.fa.s105.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167930.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53604

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523--569	24	2.0	24	83	8	60	53	2	2	42	1.25
2692--2784	46	2.0	47	87	2	134	34	1	22	41	1.61
4716--4766	25	2.0	25	88	7	77	35	3	9	50	1.54
19648--19682	17	1.9	19	88	11	56	17	17	5	60	1.55
19866--19894	9	3.2	9	100	0	58	0	10	0	89	0.48
21011--21918	458	2.0	460	88	2	1360	47	5	11	35	1.62
21859--21981	63	1.9	64	85	4	169	43	3	10	43	1.55
22353--22473	63	1.9	64	82	1	154	43	3	12	40	1.59
22852--22976	63	2.0	64	83	3	162	44	4	10	40	1.57
23626--23744	62	1.9	63	86	5	170	41	4	11	42	1.61
21401--24064	995	2.7	973	83	8	2806	46	4	11	36	1.62
23852--23970	62	1.9	62	89	0	184	50	3	5	40	1.43
24081--24122	21	2.1	21	86	8	61	35	0	0	64	0.94
24080--24122	19	2.3	18	80	11	50	34	0	0	65	0.93
25294--25425	21	6.3	20	79	5	129	32	13	35	18	1.90
25294--25425	42	3.1	42	90	2	167	32	13	35	18	1.90
25304--25425	63	1.9	63	83	0	154	31	14	35	18	1.91
28172--28303	42	3.1	42	90	2	185	18	35	13	32	1.90
28173--28303	21	6.2	21	76	5	131	18	35	13	32	1.90
28304--28357	21	2.6	21	87	0	81	16	37	12	33	1.87
28249--28359	54	2.1	54	100	0	222	17	36	13	33	1.89
28425--28459	17	2.1	17	89	5	54	14	11	22	51	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29686--29808	64	1.9	64	85	3	167	42	4	3	49	1.40
29916--30034	62	1.9	63	86	5	170	41	11	5	42	1.63
30697--30821	63	2.0	64	85	3	171	40	11	4	44	1.59
31683--31805	62	1.9	64	85	8	171	43	11	3	41	1.57
31745--32643	450	2.0	456	86	5	1270	36	11	5	47	1.62
32600--32681	40	2.0	41	92	2	139	41	3	7	47	1.49
33987--34021	17	1.9	18	88	11	54	60	5	17	17	1.55
48898--48941	22	1.9	24	90	9	74	47	9	4	38	1.56
50859--50951	46	2.0	47	89	2	143	41	21	1	35	1.60
53036--53082	24	2.0	24	83	8	60	42	2	2	53	1.25

Tables:   1

The End!