Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167931.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_194, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53419
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 2 of 2
Found at i:36835 original size:47 final size:47
Alignment explanation
Indices: 36755--36844 Score: 108
Period size: 47 Copynumber: 1.9 Consensus size: 47
36745 AAACAATTGT
** *
36755 TTAAATTATTTTATTTAAATAAAAAGTAATTTAAATAATATTATTAA
1 TTAAATTATAATATTAAAATAAAAAGTAATTTAAATAATATTATTAA
* * * * *
36802 TTAAATTATAATATTAAAATTAAAATTATTTTAATTTATATTA
1 TTAAATTATAATATTAAAATAAAAAGTAATTTAAATAATATTA
36845 ATAAATTATT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 35 1.00
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (47 bp):
TTAAATTATAATATTAAAATAAAAAGTAATTTAAATAATATTATTAA
Found at i:36877 original size:25 final size:24
Alignment explanation
Indices: 36824--36888 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
36814 ATTAAAATTA
*
36824 AAATTATT-TTAATTTATATTAAT
1 AAATTATTATTAATTTATATAAAT
36847 AAATTATTTATTAATTTA-ATAAAT
1 AAATTA-TTATTAATTTATATAAAT
*
36871 ATTATTATTATT-ATTTAT
1 A-AATTATTATTAATTTAT
36889 TAACAGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
23 11 0.31
24 13 0.36
25 12 0.33
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
AAATTATTATTAATTTATATAAAT
Found at i:37083 original size:24 final size:24
Alignment explanation
Indices: 37022--37083 Score: 56
Period size: 24 Copynumber: 2.6 Consensus size: 24
37012 TTATTGTTAA
* *
37022 TATTAATAATATATCATATTAATT
1 TATTATTAATATAACATATTAATT
* *
37046 TAATGTT-ATAATAACATA-TATATT
1 TATTATTAAT-ATAACATATTA-ATT
37070 TATTATTAATATAA
1 TATTATTAATATAA
37084 TAAAATTGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
23 4 0.14
24 23 0.79
25 2 0.07
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (24 bp):
TATTATTAATATAACATATTAATT
Found at i:37354 original size:20 final size:18
Alignment explanation
Indices: 37320--37356 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
37310 TATTGATTTT
37320 AATTTAAATATATAATTA
1 AATTTAAATATATAATTA
37338 AATTATAAATAATATAATT
1 AATT-TAAAT-ATATAATT
37357 TAGGATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AATTTAAATATATAATTA
Found at i:37519 original size:10 final size:10
Alignment explanation
Indices: 37496--37576 Score: 55
Period size: 10 Copynumber: 8.1 Consensus size: 10
37486 CCTTTTTATT
37496 TTAATAATTTA
1 TTAATAA-TTA
*
37507 TTAATAGTTA
1 TTAATAATTA
37517 TTAATAATTA
1 TTAATAATTA
37527 TT-ATCAGA-TA
1 TTAAT-A-ATTA
37537 -TAATAATTAA
1 TTAATAATT-A
* *
37547 TTAATTATAA
1 TTAATAATTA
37557 TTAAATAA--A
1 TT-AATAATTA
37566 TTAATAATTA
1 TTAATAATTA
37576 T
1 T
37577 AACCAATTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 19
0.70 0.06 0.24
Matches are distributed among these distances:
8 6 0.11
9 8 0.14
10 25 0.45
11 17 0.30
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.47
Consensus pattern (10 bp):
TTAATAATTA
Found at i:37653 original size:22 final size:22
Alignment explanation
Indices: 37628--37684 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
37618 TATAAGTATC
37628 AATAATAATATTATTGA-TAAAA
1 AATAATAATATTATT-ATTAAAA
*
37650 AATAAGTAAT-TTATTATTAATA
1 AATAA-TAATATTATTATTAAAA
37672 AATAATAA-ATTAT
1 AATAATAATATTAT
37685 ATTTATAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 8 0.26
22 19 0.61
23 4 0.13
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (22 bp):
AATAATAATATTATTATTAAAA
Found at i:38290 original size:23 final size:21
Alignment explanation
Indices: 38231--38290 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 21
38221 TATTAACTTA
38231 AAATTAGATTATAATTTATAGT
1 AAATTA-ATTATAATTTATAGT
*
38253 ATAA-TAATATCTAATTTATTAGTT
1 A-AATTAAT-TATAATTTA-TAG-T
38277 AAATTAATTATAAT
1 AAATTAATTATAAT
38291 AATTATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
21 2 0.06
22 11 0.35
23 12 0.39
24 6 0.19
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (21 bp):
AAATTAATTATAATTTATAGT
Found at i:38574 original size:19 final size:18
Alignment explanation
Indices: 38538--38584 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
38528 AATTATAAAG
**
38538 ATTATTAATAATTTTTAA
1 ATTATTAATAATAATTAA
*
38556 TATTATTATTAATAATTAA
1 -ATTATTAATAATAATTAA
38575 ATTA-TAATAA
1 ATTATTAATAA
38585 ATATATATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 5 0.21
18 4 0.17
19 15 0.62
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTATTAATAATAATTAA
Found at i:39241 original size:28 final size:33
Alignment explanation
Indices: 39185--39246 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 33
39175 ATAATTAATA
39185 AATTAAATAATAAACTTATTTGAACAATT-TCT
1 AATTAAATAATAAACTTATTTGAACAATTATCT
*
39217 AATT-AATATTAAA-TTA-TTGAA-AATTATCT
1 AATTAAATAATAAACTTATTTGAACAATTATCT
39246 A
1 A
39247 TTATAGTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
28 4 0.14
29 9 0.32
30 3 0.11
31 8 0.29
32 4 0.14
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (33 bp):
AATTAAATAATAAACTTATTTGAACAATTATCT
Found at i:39560 original size:28 final size:28
Alignment explanation
Indices: 39529--39592 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
39519 TTAAAATAAT
* * *
39529 AAATTAATTTATTATTTAA-TAATATTA
1 AAATTAAATTAATAATTAACTAATATTA
*
39556 AAAATAAATTAATAATTAACTTAATATTA
1 AAATTAAATTAATAATTAAC-TAATATTA
39585 AAATTAAA
1 AAATTAAA
39593 ATCCTTATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 15 0.50
29 15 0.50
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (28 bp):
AAATTAAATTAATAATTAACTAATATTA
Found at i:39580 original size:32 final size:34
Alignment explanation
Indices: 39516--39581 Score: 84
Period size: 32 Copynumber: 2.0 Consensus size: 34
39506 AATATAAACC
* *
39516 ATATTAAAATAATAAATTAATTTATTATTTAATA
1 ATATTAAAATAATAAATTAATTAATTACTTAATA
39550 ATATT-AAA-AATAAATTAA-TAATTAACTTAATA
1 ATATTAAAATAATAAATTAATTAATT-ACTTAATA
39582 TTAAAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 4 0.14
32 17 0.59
33 3 0.10
34 5 0.17
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (34 bp):
ATATTAAAATAATAAATTAATTAATTACTTAATA
Found at i:40342 original size:21 final size:20
Alignment explanation
Indices: 40305--40343 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
40295 TAATAAATTA
* *
40305 TTATTAATTTTATCTAATAG
1 TTATTAATTATAACTAATAG
40325 TTATATAATTATAACTAAT
1 TTAT-TAATTATAACTAAT
40344 TATAATTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (20 bp):
TTATTAATTATAACTAATAG
Found at i:40545 original size:11 final size:12
Alignment explanation
Indices: 40506--40546 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
40496 TGTAATTAGT
40506 TATATTTTATAA
1 TATATTTTATAA
**
40518 TATAAATTAT-A
1 TATATTTTATAA
40529 TATATTTTATAA
1 TATATTTTATAA
40541 T-TATTT
1 TATATTT
40547 GAACCTCAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATATTTTATAA
Found at i:41083 original size:181 final size:181
Alignment explanation
Indices: 40882--41694 Score: 524
Period size: 181 Copynumber: 4.5 Consensus size: 181
40872 AAAACCCCAA
* * * * * * *
40882 AATTTATAA-TAAAGAGATTTAAAAAATGACTTTGTTTTCTAAACAATTTTAAATAATTATGGCT
1 AATTAATAAGTAAA-AGATTTAAAAAATAAATCTGTTTACTAAACAAGTTCAAATAATTATGGCT
* * * * * * *
40946 GTTTAAATAATTATCTATTTGAAATAGCTATAACCTTTTGCTTTATCATGAAAGAATTTTTTTTC
65 ATTTAAACAATTATCTATTTCAAATAGCTATAACCTTTTGCTTTACCATAAAACAA-TTATTTT-
*
41011 TATTCAT-CTAAGCTTATTCGAAT-AAAATAATAAT-ATTTATTAATATTAAGAC
128 TATTCATAC-AAGCTTATTCGAATCAAAATAATAATAATTTATAAATATTAAGAC
* *
41063 AATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACTAAACAGGTTCAAATCATTATGGCTA
1 AATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACTAAACAAGTTCAAATAATTATGGCTA
* * * * * * * * * * *
41128 TTTGAGCAATTATTTATTTCAACTTGTTATGACTTTTTGTTTTGCCATAAAACAATTATTTTTGT
66 TTTAAACAATTATCTATTTCAAATAGCTATAACCTTTTGCTTTACCATAAAACAATTATTTTTAT
* * **
41193 TCATACAAGTTTATTCGAATCAAAATAATATTAATTTATAAATATTTTGAC
131 TCATACAAGCTTATTCGAATCAAAATAATAATAATTTATAAATATTAAGAC
* * * * * **
41244 AATTAATAAGTAAAAGAATTAAAAAATAAATATATTTACTAAACAAGTTCAAATAGTCATGAATA
1 AATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACTAAACAAGTTCAAATAATTATGGCTA
* * * * *** * * **
41309 TTTGAATAATTATCTATTTCAAATCA-TTATGACCTTTT-CTTTTGTAATAAAACACTTGTTTCA
66 TTTAAACAATTATCTATTTCAAAT-AGCTATAACCTTTTGC-TTTACCATAAAACAATTATTTTT
* * * * * * * ** *
41372 ATTCATATAAGCTTGTTTGAAGT-AAGATAATACTAATTCATTAATATTCTGAA
129 ATTCATACAAGCTTATTCGAA-TCAAAATAATAATAATTTATAAATATTAAGAC
* * * * * * *
41425 AATTAATAAGTAAGAGAATTAAAAAA-AGAATATGTTTACCAAATAAGTTCAAATAGTTATGACT
1 AATTAATAAGTAAAAGATTTAAAAAATA-AATCTGTTTACTAAACAAGTTCAAATAATTATGGCT
** * * * ** * ** *
41489 AGCTAAACAATTATCTATTTCAAA-A-CATTATGATCTTTTGTTTTGTCATTAAACAATTGGTTC
65 ATTTAAACAATTATCTATTTCAAATAGC--TATAACCTTTTGCTTTACCATAAAACAATTATTTT
* * * * * * *
41552 TGTTCATGCAAGCTTATTTCAAAT-AAAGTAAT-TTAAATTTATTAATGTTCCAA-A-
128 TATTCATACAAGCTTA-TTCGAATCAAAATAATAAT-AATTTATAAATATT--AAGAC
* * * * * * * **
41606 AATTAATAAGTAAAA-CTTTAAAAAATAAATATATTTTCTGAACAATTTCAAATAGTTATAACTA
1 AATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACTAAACAAGTTCAAATAATTATGGCTA
* *
41670 TTTGAAGAATTATCTATTT-AAATAG
66 TTTAAACAATTATCTATTTCAAATAG
41695 ATAATGATTT
Statistics
Matches: 504, Mismatches: 110, Indels: 36
0.78 0.17 0.06
Matches are distributed among these distances:
179 23 0.05
180 73 0.14
181 398 0.79
182 10 0.02
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (181 bp):
AATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACTAAACAAGTTCAAATAATTATGGCTA
TTTAAACAATTATCTATTTCAAATAGCTATAACCTTTTGCTTTACCATAAAACAATTATTTTTAT
TCATACAAGCTTATTCGAATCAAAATAATAATAATTTATAAATATTAAGAC
Found at i:41477 original size:362 final size:358
Alignment explanation
Indices: 41007--41692 Score: 808
Period size: 362 Copynumber: 1.9 Consensus size: 358
40997 AAGAATTTTT
* * * *
41007 TTTCTATTCATCTAAGCTTATTCGAATAAAATAATAATATTTATTAATATTAAGACAATTAATAA
1 TTTCAATTCATATAAGCTTATTCGAATAAAATAATAATATTCATTAATATTAAGAAAATTAATAA
* * * * * ** * *
41072 GTAAAAGATTTAAAAAATAAATCTGTTTACTAAACAGGTTCAAATCA-TTATGGCTATTTGAGCA
66 GTAAAAGAATTAAAAAATAAATATGTTTACCAAACAAGTTCAAAT-AGTTATGACTAGCTAAACA
* **** * *
41136 ATTATTTATTTCAACTTGTTATGA-CTTTTTGTTTTGCCATAAAACAATTATTTTTGTTCATACA
130 ATTATCTATTTCAAAACATTATGATC-TTTTGTTTTGCCATAAAACAATTAGTTCTGTTCATACA
* * *** *
41200 AGTTTA-TTCGAATCAAAATAATATT-AATTTATAAATATTTTGACAATTAATAAGTAAAAGAAT
194 AGCTTATTTCAAAT-AAAATAAT-TTAAATTTATAAATATTCCAAAAATTAATAAGTAAAA-AAT
*
41263 TAAAAAATAAATATATTTACTAAACAAGTTCAAATAGTCATGAA-TATTTGAATAATTATCTATT
256 TAAAAAATAAATATATTTACTAAACAAGTTCAAATAGTCAT-AACTATTTGAAGAATTATCTATT
41327 TCAAATCATTATGACCTTTTCTTTTGTAATAAAACACTTG
320 T-AAATCATTATGACCTTTTCTTTTGTAATAAAACACTTG
* * * * **
41367 TTTCAATTCATATAAGCTTGTTTGAAGTAAGATAATACTAATTCATTAATATTCTGAAAATTAAT
1 TTTCAATTCATATAAGCTTATTCGAA-TAAAATAATAAT-ATTCATTAATATTAAGAAAATTAAT
* *
41432 AAGTAAGAGAATTAAAAAA-AGAATATGTTTACCAAATAAGTTCAAATAGTTATGACTAGCTAAA
64 AAGTAAAAGAATTAAAAAATA-AATATGTTTACCAAACAAGTTCAAATAGTTATGACTAGCTAAA
* * * *
41496 CAATTATCTATTTCAAAACATTATGATCTTTTGTTTTGTCATTAAACAATTGGTTCTGTTCATGC
128 CAATTATCTATTTCAAAACATTATGATCTTTTGTTTTGCCATAAAACAATTAGTTCTGTTCATAC
* * * **
41561 AAGCTTATTTCAAATAAAGTAATTTAAATTTATTAATGTTCCAAAAATTAATAAGTAAAACTTTA
193 AAGCTTATTTCAAATAAAATAATTTAAATTTATAAATATTCCAAAAATTAATAAGTAAAAAATTA
* * * *
41626 AAAAATAAATATATTTTCTGAACAATTTCAAATAGTTATAACTATTTGAAGAATTATCTATTTAA
258 AAAAATAAATATATTTACTAAACAAGTTCAAATAGTCATAACTATTTGAAGAATTATCTATTTAA
41691 AT
323 AT
41693 AGATAATGAT
Statistics
Matches: 270, Mismatches: 48, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
360 28 0.10
361 72 0.27
362 163 0.60
363 7 0.03
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.40
Consensus pattern (358 bp):
TTTCAATTCATATAAGCTTATTCGAATAAAATAATAATATTCATTAATATTAAGAAAATTAATAA
GTAAAAGAATTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAGTTATGACTAGCTAAACAA
TTATCTATTTCAAAACATTATGATCTTTTGTTTTGCCATAAAACAATTAGTTCTGTTCATACAAG
CTTATTTCAAATAAAATAATTTAAATTTATAAATATTCCAAAAATTAATAAGTAAAAAATTAAAA
AATAAATATATTTACTAAACAAGTTCAAATAGTCATAACTATTTGAAGAATTATCTATTTAAATC
ATTATGACCTTTTCTTTTGTAATAAAACACTTG
Found at i:41746 original size:27 final size:27
Alignment explanation
Indices: 41685--41744 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
41675 AGAATTATCT
*
41685 ATTTAAATAGATAATGATTTTAAATTG
1 ATTTAAATAGATAATGATTTTAAAATG
*
41712 GTTTAAATAGATAATGA-TTTAAAATG
1 ATTTAAATAGATAATGATTTTAAAATG
41738 ATTTAAA
1 ATTTAAA
41745 ATTTTTTGTC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.42
Consensus pattern (27 bp):
ATTTAAATAGATAATGATTTTAAAATG
Found at i:42186 original size:180 final size:175
Alignment explanation
Indices: 41819--42519 Score: 648
Period size: 180 Copynumber: 3.9 Consensus size: 175
41809 AAAATGTCCC
* * * * *
41819 TTTTGTTTTGTCATAAACCAACTGTTTCTATTCATAAAAAGTTTTTTTGAAATAAAATAATACTA
1 TTTTGTTTTGTCATAAAACAACTATTTCTATTCAT-ACAA-TTTTATTCAAATAAAATAATACTA
* * * * *
41884 ATTTATTAACATTCCAAAAATTAATAAGTAGAGATTTTAAAAATAAATCTGTTTACCGAGCAAGT
64 ATTTATTAATATTCCAAAAATTAAT-A--AGAGATTTAAAAAACAAATTTGTTTACCGAACAAGT
* *
41949 TCAAATAGTTATGATTATTGGAA-TAATTATTTATTTCAAATCATTATGAT
126 TCAAATAGTTATGATTATTTGAACT-ATTATCTATTTCAAATCATTATGAT
* * *
41999 CTTTTGTTTTGTAATAAAACAA-TATTTCTATTCATACAATTTTATTTGAAATAAAATAACACTA
1 -TTTTGTTTTGTCATAAAACAACTATTTCTATTCATACAATTTTA-TTCAAATAAAATAATACTA
*
42063 ATTTATTAATATTCTAAAAATTAATAAGTTTGAGATTTAAAAAACAAATTTGTTTACCGAACAAG
64 ATTTATTAATATTCCAAAAATTAATAA----GAGATTTAAAAAACAAATTTGTTTACCGAACAAG
* * *
42128 TTTAAATAGTCAT-ATTTATTTGAACTATTATCTATTTCAAATCATAATGAT
125 TTCAAATAGTTATGA-TTATTTGAACTATTATCTATTTCAAATCATTATGAT
* * *
42179 ATTTTGTTTTGTCGTAAAACAA-TATTTCTGTTCATGTACAA--TTATTCAGAATATAATAATAC
1 -TTTTGTTTTGTCATAAAACAACTATTTCTATTCA--TACAATTTTATTCA-AATAAAATAATAC
* *** * * * * *
42241 TAATCTATTAATATTTTGATAATTAATAACAGATTT--AAAACAAATTTATTTACC-AAAATACT
62 TAATTTATTAATATTCCAAAAATTAATAAGAGATTTAAAAAACAAATTTGTTTACCGAACA-AGT
* * * * * *
42303 TCAAATATTTATGACTATTTGAACAATTAACTATCTCAAATCTTTATGAT
126 TCAAATAGTTATGATTATTTGAACTATTATCTATTTCAAATCATTATGAT
* * * * * * ** * *
42353 CTTTATTTTGTCATAAAACAAGTGTTTCTTTTCATACTAGCTTATTCAATTCAAATAATACTAAT
1 TTTTGTTTTGTCATAAAACAACTATTTCTATTCATACAATTTTATTCAAATAAAATAATACTAAT
* * * * * *
42418 TTAATAATATTCCAAAAATTAGTAAGAGATTTAAAAAAATAAATGTGTTTGCCGAACCAGTTCAA
66 TTATTAATATTCCAAAAATTAATAAGAGATTT-AAAAAACAAATTTGTTTACCGAACAAGTTCAA
* * *
42483 ATAGTTAAGACTATTAGAA-TAATTATCTATTTCAAAT
130 ATAGTTATGATTATTTGAACT-ATTATCTATTTCAAAT
42520 AATAAGTATT
Statistics
Matches: 429, Mismatches: 71, Indels: 45
0.79 0.13 0.08
Matches are distributed among these distances:
172 4 0.01
173 59 0.14
174 75 0.17
175 1 0.00
176 57 0.13
177 2 0.00
178 5 0.01
179 48 0.11
180 153 0.36
181 20 0.05
182 5 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.41
Consensus pattern (175 bp):
TTTTGTTTTGTCATAAAACAACTATTTCTATTCATACAATTTTATTCAAATAAAATAATACTAAT
TTATTAATATTCCAAAAATTAATAAGAGATTTAAAAAACAAATTTGTTTACCGAACAAGTTCAAA
TAGTTATGATTATTTGAACTATTATCTATTTCAAATCATTATGAT
Found at i:42820 original size:181 final size:178
Alignment explanation
Indices: 42528--42858 Score: 439
Period size: 181 Copynumber: 1.8 Consensus size: 178
42518 ATAATAAGTA
* * * * *
42528 TTTGATCATACAAGCTTATTCGAAATAAAATAATAATAACAATTTATTAATCTTTCAAAAATTAA
1 TTTGATCATACAAGCTTATTCGAAATAAAACAATAAT-A-AATCTAATAATATTCCAAAAATTAA
* ** * * *
42593 TAAGAGATTTAAAAAATGAATCTGTTTACTGAACCAGTTCAAATAGTTATGACTATTTGAACAGT
64 TAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAGTTCAAATAGTTAAGACTATATGAACAAT
*
42658 TCTATACTTCAAATCGTTATAGCCTTTTGTTATGCCATAAAATAATTATT
129 TCTATAATTCAAATCGTTATAGCCTTTTGTTATGCCATAAAATAATTATT
* *
42708 TTTGTTCATACAAGCTTATTCGAAATAAAACAATACT-AATCTAATAATATTCCAAAAATTAATA
1 TTTGATCATACAAGCTTATTCGAAATAAAACAATAATAAATCTAATAATATTCCAAAAA-T--TA
* *
42772 ACTAAGTGATTTAAAAAATAAATTTGTTTACCAAACCAGTTCAAATAGTTAAGACTATATGAACA
63 A-TAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAGTTCAAATAGTTAAGACTATATGAACA
* *
42837 ATTCTCTAATTCAAATTGTTAT
127 ATTCTATAATTCAAATCGTTAT
42859 GAATTGAATT
Statistics
Matches: 129, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
177 17 0.13
178 1 0.01
180 37 0.29
181 74 0.57
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (178 bp):
TTTGATCATACAAGCTTATTCGAAATAAAACAATAATAAATCTAATAATATTCCAAAAATTAATA
AGAGATTTAAAAAATAAATCTGTTTACCAAACCAGTTCAAATAGTTAAGACTATATGAACAATTC
TATAATTCAAATCGTTATAGCCTTTTGTTATGCCATAAAATAATTATT
Found at i:43058 original size:19 final size:20
Alignment explanation
Indices: 43017--43066 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
43007 ATTAATTAAG
*
43017 ATAATAATTAA-ACTACTAT
1 ATAATAATTAATAATACTAT
*
43036 ATAATAATTAATAATATTA-
1 ATAATAATTAATAATACTAT
*
43055 ATAATATTTAAT
1 ATAATAATTAAT
43067 TTAAGTACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 22 0.81
20 5 0.19
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (20 bp):
ATAATAATTAATAATACTAT
Found at i:43290 original size:16 final size:16
Alignment explanation
Indices: 43252--43296 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
43242 TATCTAATTT
*
43252 ATATAATTAAGTTCATTA
1 ATATTATTAA-TT-ATTA
43270 ATATTATTAATTATTA
1 ATATTATTAATTATTA
*
43286 TTATTATTAAT
1 ATATTATTAAT
43297 AAAATAATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.56
17 2 0.08
18 9 0.36
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (16 bp):
ATATTATTAATTATTA
Found at i:43666 original size:19 final size:19
Alignment explanation
Indices: 43644--43681 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
43634 CGTTATTTTA
43644 TAAAAAATAAATTATTAAT
1 TAAAAAATAAATTATTAAT
* *
43663 TAAAATATTAATTATTAAT
1 TAAAAAATAAATTATTAAT
43682 ATTTCAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAAAAATAAATTATTAAT
Found at i:44054 original size:16 final size:16
Alignment explanation
Indices: 44012--44060 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
44002 TATTATAAAA
44012 ATATTATAAT--TATT
1 ATATTATAATAATATT
44026 ATATTATAATAATATT
1 ATATTATAATAATATT
*
44042 A-ATTATCAGTAATATT
1 ATATTAT-AATAATATT
44058 ATA
1 ATA
44061 AATATTAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 10 0.33
15 5 0.17
16 14 0.47
17 1 0.03
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (16 bp):
ATATTATAATAATATT
Found at i:44157 original size:3 final size:3
Alignment explanation
Indices: 44151--44186 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
44141 ATTAAACTAT
44151 TAA TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
44187 TAAATCAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:44243 original size:15 final size:15
Alignment explanation
Indices: 44149--44245 Score: 62
Period size: 15 Copynumber: 6.5 Consensus size: 15
44139 TTATTAAACT
44149 ATTAATAA-TATAATA
1 ATTAATAATTA-AATA
*
44164 A-TAATAATAATAATA
1 ATTAATAATTA-AATA
44179 A-TAATAATTAAATCA
1 ATTAATAATTAAAT-A
* *
44194 GTAAATAATTAAAT-
1 ATTAATAATTAAATA
* *
44208 GTT-ATTATTAAAATCA
1 ATTAATAATT-AAAT-A
44224 A-TAATAATTAAATA
1 ATTAATAATTAAATA
44238 ATTAATAA
1 ATTAATAA
44246 ACAAATAAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
13 5 0.08
14 17 0.26
15 28 0.42
16 16 0.24
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (15 bp):
ATTAATAATTAAATA
Found at i:48269 original size:359 final size:359
Alignment explanation
Indices: 47670--48450 Score: 835
Period size: 359 Copynumber: 2.2 Consensus size: 359
47660 GATGAGCAGG
* ** * * * * * *
47670 TTTATTTTTTAAATCTCCTACCTACTAATTTTTAGAGTATTAATCAATTAGTATTATTTTATTCC
1 TTTAGTTTTTAAATCTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTCA
*
47735 AAATAAACTGTATGAATAGAAACAATTCTTTAGGACAAAACAAAAATCATAACTATTTGAAATAA
66 AAATAAACTGTATGAATAGAAACAATTCTTTAGGACAAAACAAAAATCATAACGATTTGAAATAA
* * *
47800 ATAATTGTTCAAGCAATCATGACGATTTAAACTAACTCGGTAAACAGATTTATTTTTAAAATTTT
131 ATAATAGTTCAAGCAATCATGACGATTTAAACTAACTCGGTAAACAGATTTATTTTTAAAATCTC
** * * * *
47865 TTACTCATTTAATTTTTGGATATTAAGAAATTAGTATTGTTTTATTTTGAATACATTTGTATGAA
196 CAACTCATTTAATTTTTGAATATTAAGAAATTAGTATTATTTTATTTTGAATAAACTTGTATGAA
* * * ** *
47930 TAGAATCA-ATTGGTTTATGACAAAATAAAGGATCATAACT-ATTTGAAATCGATAATTGTTCAA
261 TAGAAACATA-TGGTTTATGACAAAACAAAAGATCATAA-TGATTTGAAATAAATAAATGTTCAA
** * * **
47993 AAAGTCATAACTATTT-AAATGTGTTTAGAAAATATT
324 AAAGTCATAACTATTTGAAAT-CATTCAGAAAACAAA
*
48029 TTTAGTTTTTAAAT-TTTTACTTATTAATTTTTGAAATATTAATAAATTTA-TATTATTTTATTC
1 TTTAGTTTTTAAATCTTTTACTTATTAATTTTTAAAATATTAATAAA-TTAGTATTATTTTATTC
* * * * * * *
48092 AAAATCAGCTTGTTTGAATAGAAATAATTATTTTATGACAAAA-AAAATGTCATAACGATTTGAA
65 AAAATAAAC-TGTATGAATAGAAACAATT-CTTTAGGACAAAACAAAA-ATCATAACGATTTGAA
* ** *** ** * *
48156 ATAAATAATAGTTCAAATG-GA-CATGATTATTTAAACTTGTTCGGTAAATTG-TTTTTTTTTTA
127 ATAAATAATAGTTC-AA-GCAATCATGACGATTTAAACTAACTCGGTAAACAGATTTATTTTTAA
* ***
48218 AATCTCCAACTTA-TTAATTTTTAGAATATTAATTTATTAGTATTATTTTATTTTGAATAAACTT
190 AATCTCCAACTCATTTAATTTTT-GAATATTAAGAAATTAGTATTATTTTATTTTGAATAAACTT
*
48282 GTATGAATAGAAACATATGTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAAATAAATG
254 GTATGAATAGAAACATATGGTTTATGACAAAACAAAAGATCATAATGATTTGAAATAAATAAATG
* * * * * * *
48347 TTTAAATAGTTATAATTATTTGAACTCATTCGGTAAACAAA
319 TTCAAAAAGTCATAACTATTTGAAATCATTCAGAAAACAAA
* *
48388 TTTAGTTTTTAAATCTTTTGCTTATTAATTTTTAAAATTTTAATAAATTAGTATTATTTTATT
1 TTTAGTTTTTAAATCTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATT
48451 TTGAATAAAT
Statistics
Matches: 346, Mismatches: 64, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
358 53 0.15
359 183 0.53
360 106 0.31
361 3 0.01
362 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.43
Consensus pattern (359 bp):
TTTAGTTTTTAAATCTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTCA
AAATAAACTGTATGAATAGAAACAATTCTTTAGGACAAAACAAAAATCATAACGATTTGAAATAA
ATAATAGTTCAAGCAATCATGACGATTTAAACTAACTCGGTAAACAGATTTATTTTTAAAATCTC
CAACTCATTTAATTTTTGAATATTAAGAAATTAGTATTATTTTATTTTGAATAAACTTGTATGAA
TAGAAACATATGGTTTATGACAAAACAAAAGATCATAATGATTTGAAATAAATAAATGTTCAAAA
AGTCATAACTATTTGAAATCATTCAGAAAACAAA
Found at i:48499 original size:181 final size:181
Alignment explanation
Indices: 47566--48546 Score: 790
Period size: 179 Copynumber: 5.5 Consensus size: 181
47556 AAAATTTTAC
* * * * * * * * *
47566 ATGAACAGAAACAATTGTTTTATAACAATATAAAAGGTCATAACAATTTAAAATAAATAATTGTT
1 ATGAATAGAAACAATTGGTTTATGACAAAACAAAAGATCATAACTATTTGAAATAAATAAATGTT
* * * * * * * * * ** * ** * *
47631 CAAATGGACATGACTATTTGAACTTGTTTGATGAGCAGGTTTATTTTTTAAATCTCCTACCTACT
66 CAAATAGTCATAACTATTTAAACTTATTCGGTAAACATATTTAGTTTTTAAATCTTTTACTTATT
* * *** *
47696 AATTTTTAGAGTATTAATCAATTAGTATTATTTTATTCCAAATAAA-CTGT
131 AATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAATTTGT
* * *
47746 ATGAATAGAAACAATT-CTTTAGGACAAAACAAAA-ATCATAACTATTTGAAATAAATAATTGTT
1 ATGAATAGAAACAATTGGTTTATGACAAAACAAAAGATCATAACTATTTGAAATAAATAAATGTT
** * * * * * * * *
47809 CAAGCAATCATGACGATTTAAACTAACTCGGTAAACAGATTTA-TTTTTAAAATTTTTTACTCAT
66 CAAATAGTCATAACTATTTAAACTTATTCGGTAAACATATTTAGTTTTT-AAATCTTTTACTTA-
* * * *
47873 TTAATTTTT-GGATATTAAGAAATTAGTATTGTTTTATTTTGAATACATTTGT
129 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAATTTGT
* * * ** *
47925 ATGAATAGAATCAATTGGTTTATGACAAAATAAAGGATCATAACTATTTGAAATCGATAATTGTT
1 ATGAATAGAAACAATTGGTTTATGACAAAACAAAAGATCATAACTATTTGAAATAAATAAATGTT
* * ** * * *
47990 CAAAAAGTCATAACTATTTAAA-TGTGTTTAGAAAATATTTTTAGTTTTTAAAT-TTTTACTTAT
66 CAAATAGTCATAACTATTTAAACT-TATTCGGTAAACATATTTAGTTTTTAAATCTTTTACTTAT
*** * **
48053 TAATTTTT-GAAATATTAATAAATTTA-TATTATTTTATTCAAAATCAGCTTGT
130 TAATTTTTAG-AATATTAATAAA-TTAGTATTATTTTATTTTGAATAAATTTGT
* * ** *
48105 TTGAATAGAAATAATTATTTTATGACAAAA-AAAATG-TCATAACGATTTGAAATAAAT-AATAG
1 ATGAATAGAAACAATTGGTTTATGACAAAACAAAA-GATCATAACTATTTGAAATAAATAAAT-G
* * * * * * * ** ***
48167 TTCAAATGGACATGATTATTTAAACTTGTTCGGTAAA-TTGTTTTTTTTTTAAATCTCCAACTTA
64 TTCAAATAGTCATAACTATTTAAACTTATTCGGTAAACATATTTAGTTTTTAAATCTTTTACTTA
** *
48231 TTAATTTTTAGAATATTAATTTATTAGTATTATTTTATTTTGAATAAACTTGT
129 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAATTTGT
*
48284 ATGAATAGAAAC-ATATGTTTTATGACAAAACAAAAGATCATAA-TGATTTGAAATAAATAAATG
1 ATGAATAGAAACAAT-TGGTTTATGACAAAACAAAAGATCATAACT-ATTTGAAATAAATAAATG
* * * * * * *
48347 TTTAAATAGTTATAATTATTTGAACTCATTCGGTAAACAAATTTAGTTTTTAAATCTTTTGCTTA
64 TTCAAATAGTCATAACTATTTAAACTTATTCGGTAAACATATTTAGTTTTTAAATCTTTTACTTA
* * *
48412 TTAATTTTTAAAATTTTAATAAATTAGTATTATTTTATTTTGAATAAATTTTT
129 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAATTTGT
* * * * * * * * *
48465 ATGCACAAAAACAATTGGTTTATGACAAAACAAAAGGTAATAACGA-TT-AGATAGATAATTGTT
1 ATGAATAGAAACAATTGGTTTATGACAAAACAAAAGATCATAACTATTTGAAATAAATAAATGTT
*
48528 AAAATAGTCATAACTATTT
66 CAAATAGTCATAACTATTT
48547 GTATATGTTT
Statistics
Matches: 634, Mismatches: 144, Indels: 47
0.77 0.17 0.06
Matches are distributed among these distances:
177 5 0.01
178 112 0.18
179 197 0.31
180 149 0.24
181 164 0.26
182 7 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (181 bp):
ATGAATAGAAACAATTGGTTTATGACAAAACAAAAGATCATAACTATTTGAAATAAATAAATGTT
CAAATAGTCATAACTATTTAAACTTATTCGGTAAACATATTTAGTTTTTAAATCTTTTACTTATT
AATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAATTTGT
Found at i:48782 original size:13 final size:13
Alignment explanation
Indices: 48766--48883 Score: 61
Period size: 13 Copynumber: 9.2 Consensus size: 13
48756 TTACAAATAA
48766 ATATAATATAATT
1 ATATAATATAATT
48779 ATATAA-A-AATT
1 ATATAATATAATT
**
48790 ATATGACA-ATTGTT
1 ATAT-A-ATATAATT
* *
48804 ATCTAATGTAATT
1 ATATAATATAATT
*
48817 ATA-ATATTTAATT
1 ATATA-ATATAATT
48830 ATAGTAATA-AATT
1 ATA-TAATATAATT
**
48843 ATATTCTATAATTT
1 ATATAATATAA-TT
* *
48857 AAATATTATAATT
1 ATATAATATAATT
48870 -TATAATA-AATT
1 ATATAATATAATT
48881 ATA
1 ATA
48884 AATGTATAAT
Statistics
Matches: 79, Mismatches: 16, Indels: 21
0.68 0.14 0.18
Matches are distributed among these distances:
11 12 0.15
12 14 0.18
13 35 0.44
14 17 0.22
15 1 0.01
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (13 bp):
ATATAATATAATT
Found at i:48899 original size:41 final size:38
Alignment explanation
Indices: 48812--48895 Score: 100
Period size: 39 Copynumber: 2.2 Consensus size: 38
48802 TTATCTAATG
*
48812 TAATTATAATATT-TAATTATAGTAATAAATTATATTCTA
1 TAATT-TAATATTATAATT-TAGTAATAAATTATAATCTA
*
48851 TAATTTAAATATTATAATTTA-TAATAAATTATAAATGTA
1 TAATTT-AATATTATAATTTAGTAATAAATTAT-AATCTA
48890 TAATTT
1 TAATTT
48896 TTAATAATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
38 12 0.30
39 23 0.57
40 5 0.12
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (38 bp):
TAATTTAATATTATAATTTAGTAATAAATTATAATCTA
Found at i:49008 original size:22 final size:22
Alignment explanation
Indices: 48982--49031 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
48972 TTATAATTTG
* *
48982 TAATTAGTACA-AATTAGTTAAT
1 TAATTAATACATAAATA-TTAAT
*
49004 TAATTAATATATAAATATTAAT
1 TAATTAATACATAAATATTAAT
49026 TAATTA
1 TAATTA
49032 TAGTATTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (22 bp):
TAATTAATACATAAATATTAAT
Found at i:49023 original size:18 final size:17
Alignment explanation
Indices: 49002--49045 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
48992 AAATTAGTTA
49002 ATTAATTAATATATAAAT
1 ATTAATTAATATAT-AAT
*
49020 ATTAATTAAT-TATAGT
1 ATTAATTAATATATAAT
49036 ATTAA-TAATA
1 ATTAATTAATA
49046 ATTTATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 4 0.17
16 7 0.29
17 3 0.12
18 10 0.42
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
ATTAATTAATATATAAT
Found at i:49042 original size:22 final size:21
Alignment explanation
Indices: 48999--49053 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
48989 TACAAATTAG
48999 TTAATTAATTAATATATAAATA
1 TTAATTAATT-ATATATAAATA
*
49021 TTAATTAATTATAGTATTAATA
1 TTAATTAATTATA-TATAAATA
* *
49043 ATAATTTATTA
1 TTAATTAATTA
49054 ATTCAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 3 0.10
22 26 0.90
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TTAATTAATTATATATAAATA
Found at i:49819 original size:17 final size:16
Alignment explanation
Indices: 49790--49824 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
49780 TAATTTTTTA
*
49790 AATATTTATAATAATT
1 AATATTTAAAATAATT
49806 AATATATTAAAATAATT
1 AATAT-TTAAAATAATT
49823 AA
1 AA
49825 ATGGTAGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATTTAAAATAATT
Found at i:51075 original size:181 final size:182
Alignment explanation
Indices: 50842--51245 Score: 555
Period size: 181 Copynumber: 2.2 Consensus size: 182
50832 AAATTTTAAG
* * * * * * *
50842 TATTAACATTCAAAAAATTAATAAGCAAAAGATATGAAAAAATAAATTTGTTTACCGATCAAGTT
1 TATTAATATTCCAAAAATTAATAAGCAAGAGATTTAAAAAAATAAATTTGTTTACCGAACAAATT
* * * *
50907 TAAATAGTTATGACTATTTGAACAATTATTTATTTAAAATTATTATGA-GTATTTGTTTTGACA-
66 CAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCT-TTTGTTTTGACAT
*
50970 AAAACAAATTGTTTCAGTTCATAAAAGCTTA-TCTAAAATAAAATTATACTAATT
130 AAAA-AAATTGTTTCAGTTCATAAAAGCTTATTC-AAAATAAAATAATACTAATT
* * * *
51024 TCTTAATATTTCAAAAATTAATAAGCAAGAG-TTTAAAAAAATTAATTTGTTTACTGAACAAATT
1 TATTAATATTCCAAAAATTAATAAGCAAGAGATTTAAAAAAATAAATTTGTTTACCGAACAAATT
*
51088 CAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTGTCATA
66 CAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTGACATA
* * *
51153 AAATAATTGTTTCAGTTCATACAAGCTTATTCAAAATAAAATAATAGTAATT
131 AAAAAATTGTTTCAGTTCATAAAAGCTTATTCAAAATAAAATAATACTAATT
* *
51205 TATTAATATTCCAAAAATTAATAAGTAAGTGATTTAAAAAA
1 TATTAATATTCCAAAAATTAATAAGCAAGAGATTTAAAAAA
51246 TGATTCTCTT
Statistics
Matches: 194, Mismatches: 24, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
181 152 0.78
182 42 0.22
ACGTcount: A:0.45, C:0.09, G:0.08, T:0.38
Consensus pattern (182 bp):
TATTAATATTCCAAAAATTAATAAGCAAGAGATTTAAAAAAATAAATTTGTTTACCGAACAAATT
CAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTGACATA
AAAAAATTGTTTCAGTTCATAAAAGCTTATTCAAAATAAAATAATACTAATT
Found at i:51273 original size:181 final size:181
Alignment explanation
Indices: 50842--51297 Score: 519
Period size: 181 Copynumber: 2.5 Consensus size: 181
50832 AAATTTTAAG
* * * * * * * * * *
50842 TATTAACATTCAAAAAATTAATAAGCAAAAGATATGAAAAAATAAATTTGTTTACCGATCAAGTT
1 TATTAATATTCCAAAAATTAATAAGCAAGAG-TTTAAAAAAATTAATTTCTTGACTGAACAAGTT
* * * *
50907 TAAATAGTTATGACTATTTGAACAATTATTTATTTAAAATTATTATGAGTATTTGTTTTGACAAA
65 CAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACTATTTGTTTTGACAAA
*
50972 AACAAATTGTTTCAGTTCATAAAAGCTTATCTAAAATAAAATTATACTAATT
130 AACAAATTGTTTCAGTTCATAAAAGCTTATCTAAAATAAAATAATACTAATT
* * * * *
51024 TCTTAATATTTCAAAAATTAATAAGCAAGAGTTTAAAAAAATTAATTTGTTTACTGAACAAATTC
1 TATTAATATTCCAAAAATTAATAAGCAAGAGTTTAAAAAAATTAATTTCTTGACTGAACAAGTTC
*
51089 AAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCT-TTTGTTTTGTCATA
66 AAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGA-CTATTTGTTTTGACA-A
* * *
51153 AAA-TAATTGTTTCAGTTCATACAAGCTTAT-TCAAAATAAAATAATAGTAATT
129 AAACAAATTGTTTCAGTTCATAAAAGCTTATCT-AAAATAAAATAATACTAATT
* * * **
51205 TATTAATATTCCAAAAATTAATAAGTAAGTGATTT-AAAAAA-TGATTCTCTTGA-TCGAATTAG
1 TATTAATATTCCAAAAATTAATAAGCAAGAG-TTTAAAAAAATTAATT-TCTTGACT-GAACAAG
* * *
51267 TTCAAATAATTATGGCTATTTCAACAATTAT
63 TTCAAATAGTTATGACTATTTGAACAATTAT
51298 TTGTTTGATC
Statistics
Matches: 235, Mismatches: 33, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
180 6 0.03
181 195 0.83
182 34 0.14
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (181 bp):
TATTAATATTCCAAAAATTAATAAGCAAGAGTTTAAAAAAATTAATTTCTTGACTGAACAAGTTC
AAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACTATTTGTTTTGACAAAA
ACAAATTGTTTCAGTTCATAAAAGCTTATCTAAAATAAAATAATACTAATT
Found at i:51331 original size:21 final size:23
Alignment explanation
Indices: 51289--51331 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
51279 TGGCTATTTC
51289 AACAATTATTTGTTTGATCATAT
1 AACAATTATTTGTTTGATCATAT
*
51312 AACAATTGTTT-TTT-ATCATA
1 AACAATTATTTGTTTGATCATA
51332 CAAGCTTCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 3 0.16
23 10 0.53
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (23 bp):
AACAATTATTTGTTTGATCATAT
Found at i:52143 original size:25 final size:26
Alignment explanation
Indices: 52115--52172 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
52105 TTTATATAGT
*
52115 ATAAATT-TAAATAATTAATATTATA
1 ATAAATTATAAATAATTAATAATATA
* *
52140 AT-AATTATAAATTATTACTAATATA
1 ATAAATTATAAATAATTAATAATATA
52165 AT-AATTAT
1 ATAAATTAT
52173 GTTTATTAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 4 0.14
25 25 0.86
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (26 bp):
ATAAATTATAAATAATTAATAATATA
Found at i:52256 original size:92 final size:89
Alignment explanation
Indices: 52092--52262 Score: 195
Period size: 91 Copynumber: 1.9 Consensus size: 89
52082 ATTTAAAATA
* * *
52092 TTAAAATAATAATTTTATATAGTATAAATTTAAATAATTAATATTATAATAATTATAAATTATTA
1 TTAAAATAATAATTTTATATAGTATAAATTTAAATAATTAATATTAAAATAATAATAAA-TACTA
*
52157 CTAATATAATAATTATGTTTATTAGT
65 ATAATATAA-AATTATGTTTATTAGT
* * *
52183 TTAAAATAATTATTTTATTATATTATAAA-TTATAATAAATAATTAGTTTAAAATAATAATAAA-
1 TTAAAATAATAATTTTA-TATAGTATAAATTTA-AATAATTAA-TA--TTAAAATAATAATAAAT
52246 ACTAAT-ATATAAAATTA
61 ACTAATAATATAAAATTA
52263 CATAAAAAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
91 24 0.35
92 24 0.35
93 6 0.09
95 14 0.21
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.45
Consensus pattern (89 bp):
TTAAAATAATAATTTTATATAGTATAAATTTAAATAATTAATATTAAAATAATAATAAATACTAA
TAATATAAAATTATGTTTATTAGT
Found at i:52353 original size:16 final size:16
Alignment explanation
Indices: 52332--52366 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
52322 CAATAAATTA
* *
52332 TTATATTAGTTATAAT
1 TTATATTAATAATAAT
52348 TTATATTAATAATAAT
1 TTATATTAATAATAAT
52364 TTA
1 TTA
52367 AACAATAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (16 bp):
TTATATTAATAATAAT
Done.