Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167932.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_195, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53324
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Found at i:6791 original size:26 final size:26
Alignment explanation
Indices: 6755--6807 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6745 CTGGTCCGAT
6755 CTTACATTGGGAATGAACTCCATATG
1 CTTACATTGGGAATGAACTCCATATG
* *
6781 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCATATG
6807 C
1 C
6808 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACATTGGGAATGAACTCCATATG
Found at i:8576 original size:26 final size:26
Alignment explanation
Indices: 8547--8599 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
8537 TGGTCCGATC
* * *
8547 CTTACATTGGGAATGCACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
8573 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
8599 C
1 C
8600 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:12135 original size:26 final size:26
Alignment explanation
Indices: 12099--12151 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12089 CTGGTCTGAT
*
12099 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
12125 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
12151 C
1 C
12152 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:13577 original size:896 final size:893
Alignment explanation
Indices: 5971--14128 Score: 9988
Period size: 896 Copynumber: 9.1 Consensus size: 893
5961 GCTCATGACA
* ** * * *
5971 CCGGGGATCGATCGGGTCCTCCCTGTGTGCTG-TCGATCCTACTGCCACAACCTTCGGTCCGGTC
1 CCGGGGATCG-TCGGGTCCCCCCTACGTGCTGCT-GATCCTGCTGCCACAACCCTCGGTCTGGT-
* ** * *
6035 CGATCCAATCTTAGACTGGGAATGAACTCCGT-TGCCTAAGCCAACCGATTAAAACCAGCGGACG
63 C--T--GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAACGAGCGGGCG
* ** * * *
6099 GGCAGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTAGTAGGTGG
123 GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
6164 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGTCATTTTTATGGCTTCTAAATTCATACAA
188 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * **
6229 TGGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCATAATTT
253 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTT
* * * ** * *
6294 TTGAAACTTTCTAGGGTTCTAGATTTTTTT--AATTGTTTTCAGAAGGATTTTTGGTCCCAAACT
318 TTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATT-TTTTCAGAAGGAGTTTT-GCCCCAAACT
* *
6357 TGGTAGACGTGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
381 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
6422 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
446 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
6487 CAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
511 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
* * *
6552 GGGGCCAATATAATGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCTG-CCCC
576 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCC
* ** * * * **
6616 CCAATCGCCGGAACCCCAATGCTACTGGTCAGGCTCTCCGGCGATGCTCCGACGATGGTGCCATG
641 CCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC-CC
* * * *
6681 GGCGAAAAAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCAACCGCAACCTTCGGTC
705 GGCG-AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTC
* * *
6746 TGGTCCGATCTTACATTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTA
769 CGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
*
6811 AGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG
834 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG
* * * * ** * ** * *
6871 TCGGGGATCAGTCGGGTCTGCCCCTACATTCTGCCAATCTTGCTGCTGCAACCCTTGGTCCGGTC
1 CCGGGGATC-GTCGGGTC-CCCCCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCTGGTC
* * * *
6936 -GAATCTTAGACTTGGAATGAACTCCATACGCCTAAGCTAACCGACGAAACGAGCGGGCGGGCGG
64 TG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * * *
7000 GCACTACGCCGACTAGAGAAGCGGGTTGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
128 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
7065 GGCACATCTTCATATTTATACCATGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTC
193 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
7130 CTTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAA
258 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAA
** * * *
7195 ACTTTTTACGGTTTTGGATTTTTTTAAAATTTTTTCTGAAGGAATTTTTGCCCCAAACTTCGTAG
323 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG-AGTTTTGCCCCAAACTTGGTAG
* * * * * **
7260 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATACAGCTAAAAAGTCGTAGTGTACAAT
387 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
*
7325 ATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
452 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* ** *
7390 TGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCC
517 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
*
7455 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACA-CCCCCGCCCCCCCAATC
582 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATC
* * * *
7519 GTTGGAACCCCACTGTCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGGCGAA
647 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC-CGGCGAA
* *
7584 AAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCACCCGTAACCCTCGGTCCGGTCCG
711 AAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCG
* * *
7649 ATCTTACCCTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCAAAGTCAAC
776 ATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
7714 CCACGAAACGAGCGTGCGGACGCTCAGCTGGCCAGAGGGGCAGGATGCCCGAG
841 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG
* * ** * *
7767 CCGAGGATCGGTCGGGGCCCCCCTGTGTGCTGCTGATCCTGCTGCCGCAACCCTAGGT-TCGGTC
1 CCGGGGATC-GTCGGGTCCCCCCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCT-GGTC
** * * * * *
7831 CAATGTTAGACTTGGAATGAACACCGTATGCCTAATCCAACCGACGAAACGAGCAGGCGGGCGGG
64 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * *
7896 CACTACGCCAGCCAGCGAGGCGGGATGCGCAAGCCGCGAATCGATAGGGTTGTAGGTGGGTTTAG
129 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
7961 GCACATCTTCATATTTCTTCCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCC
194 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
8026 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTT-AAA
259 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAA
* *
8090 CTTTTTACGGTTCGAGA-TTTTTTAAAACTTTTTCAGAAGGAGTTTTTGCCCCAAACTTGGTAGA
324 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAG-TTTTGCCCCAAACTTGGTAGA
* * * *
8154 CGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAAGTCACCTAAAAACTCGAAGTGTACAGGA
388 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
* * * *
8219 TTTTGTGACCATTTGAAAAAATTGTCCCCATTTTAGACACTTTAATGGCTATTGGTAGCAAACCT
453 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
** *
8284 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCA
518 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
** * ** *
8349 ATATAAGGGTGAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTCGTGCCCCCCTAATCG
583 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCG
* * ** ** * * *
8414 TCGAAACCCCAATGCCGTCGGTCAGGTTCTTTGACGACGCTTCGACGATGGTGCCCCGAGTGAAA
648 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG-GCGAAA
* ** *
8479 AAAAATGCGACACCAGCACATGTTCGAGCCCAGCATGTGCACCCGCAACCTTCGGTCCTGGTCCG
712 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCC-GGTCCG
* * * * * *
8544 ATCCTTACATTGGGAATGCACTCCGTATGCTTACACTAGGAATGAACTCCGTATGCCTAGGTCAA
776 AT-CTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * * *
8609 CCCGTGGAACGAGCATGCGGGCGCTCAGCCGGAGCAGAGGGGCAGGATGCGCAAG
840 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-CCAGAGGGGCAGGATGCACAAG
* * * * * *
8664 CCGGGGATCAGTCGGGTCTGCCCCTACGTGCTGCCGATCTTACAGCCACAACCCTTGGTCTGGTC
1 CCGGGGATC-GTCGGGTC-CCCCCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCTGGTC
** * * * * ** * *
8729 CCATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAATCGATGAAATGAGCAAGCGGCCGGC
64 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * *
8794 CACTACACCGACCAGAGAGGCGGAGATGCACAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTA
129 CACTACGCCGGCCAGAGAGGCGG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * * * *
8859 CGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGGTTGAAAATTCAAAAAATGGTC
193 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
8924 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTCAAA
258 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAA
** * * *
8989 ACTTTTTTTGATTCGGGATTTTTTTAAAATTTTTTCAAAACGAGTTTTTGCCCCAAACTTGGTAG
323 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAG-TTTTGCCCCAAACTTGGTAG
*
9054 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAGG
387 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
***
9119 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTCATAGCAAACC
452 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
9184 TGTAAAATCTGAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
517 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
*
9248 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCCGCACACCCCGCCG-CCCCCCAAT
582 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGCCCCCCCAAT
* * * *
9312 CGACGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCTCGGGTGA
646 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC-CCGGCGA
** * ** **
9377 AAACAAAATGCAACACCAGCATATGCCC-AGGCCCAGCATGTGCACCCAAAACCCTCGGTCCTAT
710 AAA-AAAATGCGGCACCAGCACATGCCCGA-GCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
* * * ** *
9441 CCAATCTTACATTGGGAATGAACTCCATATGCTTACG-TTGGGAATGAAC-CTTATATGGCTAAG
773 CCGATCTTACACTGGGAATGAACTCCATATGCTTA-GACTGGGAATGAACTC-CGTATGCCTAAG
* * * * *
9504 TCAACCCACGAAATGAGCGTACAGGCGCTCAGTCGGCCAGA-GGGCTAGGATGCACAAT
836 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-AGGATGCACAAG
** * * * * * * ** *
9562 TTGGGGATCGACCGGGCCCCCCCTACGTGCTGCCGATCCTGCGGCTACAACCCTTGGTCCAGCCT
1 CCGGGGATCG-TCGGGTCCCCCCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCTGGTCT
* * * *
9627 GATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCGACCGACGAAATGAGTGGGCGGGCGGGC
65 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * *
9692 ACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGG
130 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
9757 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATCCAATGGTCCC
195 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
9822 TTAAGCCTTCATGTG-AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTTAAAC
260 TTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
** * *
9886 TTTTTACGGTTCAAGA-CTTTTTAGAAATTGTTTT-AGAAGGAGTTTTGGCCCAACACTTGGTAG
325 TTTTTACGGTTCGGGATTTTTTTA-AAATT-TTTTCAGAAGGAGTTTTGCCCCAA-ACTTGGTAG
* * * *
9949 ACGTGATCCTTGTATTTTTTTTGGAATGCACAAAAAATTTCAACTAAAAACTCGAAGTGTACAGG
387 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
**
10014 ATTTTGTGACCATTTGAAAAAAGTGAACCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
452 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
10079 TGTAAAATCTCAAATGCTC-TTAAGGGGGTGTGAGTTCTTGAGGTTTTGATGAGGGATAGGGGGC
517 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG-TTTGATGAGGGATAGGGGGC
* *
10143 CATTATAAGGGCCAAGTACCAGC-CCCCTCGC-CATCATGTTGCGCACCAGCCCCCCTGCCCCCC
581 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-TGCGCA-CA-CCCCCC-GCCCCCC
* * ** * * ** * **
10206 CAATCG-CTGAACCCCATTGTTGTCGGTCAAAGTTTCTCCAATGATGCTCGGGAAAATGGTGCCC
642 CAATCGTCGGAACCCCAATGCCGCCGGTC--AGGTTCTCCGGTGATGCTC-CGACGATGGTG-CC
* * *
10270 CCGAGCG-AAACAAATACGGCATCCAGCA-ATGCCCGAGCCCAGCATGTGCACCCACAA-CC-C-
703 CCG-GCGAAAAAAAATGCGGCA-CCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCG
*
10330 -T-CGGT----T-TT---C---G---G---TCC-TGAT-CTTACACTGGGAAATG-A-TCCGTAA
766 GTCCGGTCCGATCTTACACTGGGAATGAACTCCAT-ATGCTTAGACTGGG-AATGAACTCCGT-A
* * * * **
10372 TG-C-AAGTCAA-CCACGAAATGAAGCGTACGGGTGCTCAGCCGGCCAGAGGGGTAGGATGTGCA
828 TGCCTAAGTCAACCCACGAAACG-AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACA
10434 AG
892 AG
* * ** * * * * *
10436 TCGGGGATCGACCAAGTCCCCCCTATGTGCTG-TCGATCTTGTTGCCGCAACCCTCGGT-TCGAT
1 CCGGGGATCG-TCGGGTCCCCCCTACGTGCTGCT-GATCCTGCTGCCACAACCCTCGGTCT-GGT
* * *
10499 CTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-ACCGGCTAAACGAGCGGGCGGGCGG
63 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* *
10563 GCATTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTA
128 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
** *
10628 GGTGCATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTCAATTCATACAATGGTC
193 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
10693 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGATTCATTTTCTATTTTTCACGATTTTTGAA
258 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * * * *
10758 ACTTTTTACAGTTTGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGGCCCAAACTTGGTAA
323 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT-GCCCCAAACTTGGTAG
* **
10823 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTGCAAC
387 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* * * *
10888 ATTTTGTGACCTTTTGAAAAAAATGTCCCCATTTCAGAAACTTTAATGGCTACTGGCA--AAAAC
452 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* ** * * *
10951 TGTAAAATCTCAAATGCTCTTTAAGGGGG-GTGAATTCTCCAGGTTCGATGATGGATAAGGGGCC
517 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
* ** * *
11015 -ATATAAGGGCCAAGCAATAGCACCCATTGCACATCATGTGCACACACCCCCCG-CCCCCCAATC
582 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATC
* * * ** *
11078 GTCGGAACCTCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGATGATGGGTGGCCCCGGCAA
647 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGAT-GGT-GCCCCGGC--
* * * * *
11143 AAAAAAAAAGTG-GGCACCAGCACATTGCCC-AACCCTGCATGTGACACGGCGC-ACCCTCAGTC
708 GAAAAAAAA-TGCGGCACCAGCACA-TGCCCGAGCCCAGCATGTG-CAC-CCGCAACCCTCGGTC
* * * * * *
11205 TGAATCCGAACTTACACTGGG-ATGAACTCCCTATGCTTCAGACTAGTGAATG-ACTTCGTATGC
769 CG-GTCCGATCTTACACTGGGAATGAACTCCATATGCTT-AGACT-GGGAATGAACTCCGTATGC
* * * *
11268 CTAAAG-CAACCCACGAAACGAGGGCGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCACAGG
831 CT-AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG
* * * ** ** * * *
11331 TCGAGGATTGGTCGGGTCCCCCCCTGTGTGCTGCCAATACTGCTGCCACAACCCTCTGTCCGGTC
1 CCGGGGA-TCGTCGGGT-CCCCCCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCTGGTC
* * * *
11396 TGATCTTTGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGTGGG
64 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * * * *
11461 CACTGCACCAGTCAAAGAGGTGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
129 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
11526 GCAAATCTTCATATTTCTACCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
194 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
11591 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACG---------A
259 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAA
* * *
11647 --TTTTACGGTTCGTGACTTTTTTAAAATTTTTTCATAAGGAGTTTTGGCCCCAAACTTGGTAGA
324 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT-GCCCCAAACTTGGTAGA
* * *
11710 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTATACAGGA
388 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
** * * * * *
11775 TCGTGAGAACATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACGGGCAGTAAACCT
453 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* **
11840 ATAAAATCTCAAATGCTCTTTAAGGGCATGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
518 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
* * *
11905 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCCCCG-CCCCCCATTCG
583 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCG
* * ** **
11969 TCAGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTGATGCTTTGGTGATGGTGCCCCGAGCG-AA
648 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG-GCGAAA
* * * * * *
12033 AAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATATGCACCCACAACCCTCGGTCTGGTCTGA
712 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGA
* *
12098 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
777 TCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
12163 CATGAAACGAGCGTGCGGGCGATCAGCCGGCCAGAGGGGCAGGATGCGCAAA
842 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG
* * * * * ***
12215 CCGGGGATCGACTGGCTCCCTCCCTACGTGCTACTGATCCTGCTGTCACGACCCTCAACCTGGTC
1 CCGGGGATCGTC-GGGTCCC-CCCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCTGGTC
*
12280 TGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-GGG
64 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * *
12344 CACTATGCCGGCCGGAGGGGCTGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
129 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *** *
12409 GCACATGTTCATACTTCTGTTGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCC
194 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* ** * *
12474 CTTAAGCCTTCATGTGAAGTGTCATGGCAAGGCGACTCGTTTTTTATTTTTCACAATTTTTAAAA
259 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAA
* * * * *
12539 ATTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTGGA
324 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT-GCCCCAAACTTGGTAGA
* * *
12604 CGTGATCCTTGTCTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATTGAAGTGTACAGGA
388 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
*
12669 TTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
453 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
12734 TTAAAATCTCGAATTCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
518 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
* * *
12799 ATATAAGGGCCAAGTACCAGCACCCATTGCACATTATGTGCGCACACCCCCCGCCCCCCCAATCA
583 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCG
* * *
12864 CCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGGTGATGTTCCGACGATGGTGCCCCAGGCGAAA
648 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC-GGCGAAA
* ** * * * * *
12929 AACAAATGTGGCACCAGCACATGCCTAAGCCTAGCATGTGCACCCACAACTCTTGGTCCGGTCTG
712 AA-AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCG
* * * *
12994 ATCTTTCACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
776 ATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* ** * * * *
13059 CTATAAAACGAGCGTAC-GGCGCTCAGCCGGCCAGAAGGGCAGGATGGACAAA
841 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG
* * * *
13111 CCGGGGATCAGTCGGGTCCCCCCTGCGTGTTGCTGATCCTGCTGCCACAACCCTCAGTCTGGTAT
1 CCGGGGATC-GTCGGGTCCCCCCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCTGGTCT
* * *
13176 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGAGCGGGTGGGC
65 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * * * * *
13241 ACTGCACCAGCCAAAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTACG
130 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
13306 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
195 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* **
13371 TTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCGAAAC
260 TTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
* * * * *
13436 TTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGCCCCAAACATCGTAGACA
325 TTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGCCCCAAACTTGGTAGACG
* * * *
13501 TGATCCTTGTATTTTTGTTAGCAAGGACAAAGAAATTCAGCTAAAAACTCGAAGTGTACAGGATG
390 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT-
* ** * * *
13566 GTCATGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTG
454 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* ** *
13631 TAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAA
519 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
*
13696 TATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCCCGCCCGCCCCAAT
584 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGCCC-CCCCAAT
** * * * *
13761 CACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGATGATGCTCC-AGCGATGGTGCCCCAGGCC
646 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGA-CGATGGTGCCCC-GGCG
* * * * * *
13825 AAAAAGAATGCGGCACTAGCACATGCCCGAGCCCATCATTTGCACCCGTAACCCTCGATCCGGTC
709 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTC
* *
13890 TGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCA
774 CGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
13955 ACCCACGAAACGAGCGTGCAGGCACTCAGCTGGCCAGAGGGACAGGATGCACAAG
839 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG
* * * *** *
14010 CCGGGGATCGATCGAGTCCCCCCTACGTGCTACTGATCTTGCTGCTGGAACTCTCGGTC-GGATC
1 CCGGGGATCG-TCGGGTCCCCCCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCTGG-TC
** * *
14074 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
64 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
14129 TACGTGCGCT
Statistics
Matches: 6250, Mismatches: 859, Indels: 299
0.84 0.12 0.04
Matches are distributed among these distances:
865 6 0.00
866 23 0.00
867 18 0.00
868 40 0.01
869 16 0.00
870 23 0.00
871 30 0.00
872 41 0.01
873 183 0.03
874 314 0.05
875 18 0.00
876 14 0.00
877 9 0.00
880 3 0.00
883 181 0.03
884 181 0.03
885 36 0.01
886 191 0.03
888 38 0.01
889 36 0.01
890 96 0.02
891 5 0.00
892 6 0.00
893 273 0.04
894 450 0.07
895 788 0.13
896 1169 0.19
897 819 0.13
898 293 0.05
899 472 0.08
900 206 0.03
901 272 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
CCGGGGATCGTCGGGTCCCCCCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCTGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCG
GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCGAAAAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTT
ACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG
Found at i:13946 original size:26 final size:26
Alignment explanation
Indices: 13894--13946 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13884 CCGGTCTGAT
*
13894 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCACATG
* *
13920 CTTAGACTGGGAATGAACTCCGCATG
1 CTTACACTGGGAATGAACTCCACATG
13946 C
1 C
13947 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCACATG
Found at i:14287 original size:159 final size:158
Alignment explanation
Indices: 13920--14287 Score: 488
Period size: 158 Copynumber: 2.3 Consensus size: 158
13910 ACTCCATATG
* *
13920 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGC
* *
13985 TGGCCAGAGGGACAGGATGCACAAGCCGGGGATCGATCGAGTCCCCCCTACGTGCTACTGATCTT
66 CGGCCAGAGGGACAGGATGCACAAGCCGGGGATCGACCGAGTCCCCCCTACGTGCTACTGATCTT
*** **
14050 GCTGCTGGAACTCTCGGTCGGATCCAAT
131 GCTGCCACAACTCTCAATCGGATCCAAT
*
14078 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAC-GTGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAG-GCACTCAG
* * *
14142 CCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTA-TCGAT
65 CCGGCCAGAGGGACAGGATGCACAAGCCGGGGATCGACCGAGTCCCCC-CTACGTGCTACT-GAT
* ** **
14206 CTTGCTGCCACAAGTCTCAATTTGATCTGAT
128 CTTGCTGCCACAACTCTCAATCGGATCCAAT
* * * * *
14237 CTTAGATTGAGAATGAACTCCGTATGCCTAAGCCAACACACCAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
14288 GGCGGGCGGG
Statistics
Matches: 184, Mismatches: 23, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
157 1 0.01
158 103 0.56
159 80 0.43
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGC
CGGCCAGAGGGACAGGATGCACAAGCCGGGGATCGACCGAGTCCCCCCTACGTGCTACTGATCTT
GCTGCCACAACTCTCAATCGGATCCAAT
Found at i:22151 original size:26 final size:26
Alignment explanation
Indices: 22115--22167 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22105 CCAGTTTGAT
*
22115 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGCATG
*
22141 CTTAGACTGGGAATGAACTCCGCATG
1 CTTACACTGGGAATGAACTCCGCATG
22167 C
1 C
22168 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGCATG
Found at i:23054 original size:26 final size:26
Alignment explanation
Indices: 23018--23070 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23008 CTGGTCGAAT
*
23018 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
23044 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
23070 C
1 C
23071 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:23854 original size:900 final size:887
Alignment explanation
Indices: 21394--24065 Score: 3398
Period size: 905 Copynumber: 3.0 Consensus size: 887
21384 GGCCGGTTTG
21394 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACAA-AACGAGCGGGCGGGCGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AAC--CAAGAACGAGCGGGCGGGCGGCA
* *
21458 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
63 CTACGTCGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
21523 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTATAAATTCATATAATGGTCCCT
128 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
21588 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACT
193 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* *
21653 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCACCAAACTTGGTAGACG
258 TTTTACGGTTCGAGA-TTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
21718 TGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCAAAGTGTACAGGATT
322 TGATCCTTGCATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATT
* * *
21783 TTATGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGT
386 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
21848 AAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
451 AAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
21913 ATAAGGGCCAAGTAGCAGCACCCATCACACATCATGTGCCCACACCCCCTCCCTCGCTCCCCCAA
516 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCACCC-C-CACCCCCAA
* * * * *
21978 TCG-CTGGAACCCTAATGCCGCTTGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCAAGC
576 TCGTC-GGAACCCCAATGCCG-TCGTCAGGTTCTCCGGCGATGCTCCGAC-ATGGTGCCCC-GGC
* * * *
22042 GAAAAACAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAAGTGCACCCCCCAACCCTTGATCC
637 GAAAAA-AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCA-CCCGCAACCCTCGGT-C
* * *
22107 AGTTTG-ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTA
699 AGGTCGAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
22171 AGTCAACCCACGAAACGAGCGTGCAAGCGCTCAGCCAGCCAGAGGGGCAGGATGTACAAGCCGGG
764 AGTCAACCCACGAAACGAGCGTG-GAGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCC-GG
* * * * * * *
22236 GATCGGCTGGGTCCCCCCCTATGTATTGCCAATCCTACTTTCGTAACCCTCGGTTCAATCCG
827 GATCGGCCGGGT-CCCCCCTACGTACTGCCAATCCTACTCTCGCAACCCTCGGTCCAATCCA
* ** * * **
22298 ATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAATTGACGAAACGAGCGGACGGGCAATCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCAAG-AACGAGCGGGCGGGC-GGCA
* * *
22363 CTACGTC-GATCAGAGAGGTGGGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGG
63 CTACGTCGGCT-AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
22427 GACATCTTCATATTTCTGCCATGCCCATCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
127 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
22492 TTAAGCCTTCGTGTGAAGTTTCTTGGCAAGACGGCTCATTTTCTATTTTTCATGATTTTTGAAAC
192 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * *
22557 TTTTTACAGTTCGAGATTTTTTAAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGAC
257 TTTTTACGGTTCGAGATTTTTT-AAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * * * *
22622 ATGATCCTTGGATTTTTTTTGTCTTGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGAACAGGAT
321 GTGATCCTTGCATTTTTTTTGGCATGC-ACAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGAT
* * *
22687 GTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACTTG
385 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * * * *
22752 TAAATTCTCAAATCCTCTTTAAGGGGTTGGGAGATCTCGAGGTTTGATGAGGGATAGGGGGCCAA
450 TAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
*
22817 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCCCTACCCCCCAA
515 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCAC-CCCC-A-CCCCCAA
* * * * * * *** *
22882 TCGTCGAAACCCCAATGTCGCCGGTTAGGTCCTCCGGCGATGCTCTAGTGTTGGTGCACCGGGCG
576 TCGTCGGAACCCCAATGCCGTC-GTCAGGTTCTCCGGCGATGCTC-CGACATGGTGC-CCCGGCG
* * * * *
22947 AAAAAAAAAATACGGCTCCAACAAATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGG
638 -AAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCAGG
*
23012 TCGAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGT
702 TCGAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
23077 TAACCCACGAAACGAACGTGTGGGCGCTCAGCCGGCCA-TGGGGTAGGATGCACAAGCCAGGGAT
767 CAACCCACGAAACGAGCGTG-GAGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCC-GGGAT
* * *** **
23141 CGGCCAGGTCCCCCCTACGTGCTGTTGATCCTACTGCT-GCAACCCTCGGTCCGGTCCA
830 CGGCCGGGTCCCCCCTACGTACTGCCAATCCTACT-CTCGCAACCCTCGGTCCAATCCA
* *
23199 ATCTTAGACTGGGAATGACCTCCGTATGCCTAAGCCAACCAATGAACAAGCGGGCGGGCGGGCAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAA-GAACGAGCGGGCGGGC-GGCAC
* * * *
23264 TACGTCGGCTAGGGAGGCGGGATGTGCAAGCCGTGGATCGATATGGTGGTTGGTGGGTTTAGGCA
64 TACGTCGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
23329 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
129 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
**
23394 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTT
194 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
*
23459 TTTACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTGGACGTG
259 TTTACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
23524 ATCCTTGTATTCTTGTTGGCATGCACAAACAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTG
324 ATCCTTGCATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTG
* * *
23589 TTACCATTTGAAAAATTGTGTCCCCATTTCCCAGACACTTTTAATGGCTACTGGCAACAAATCCT
389 TGACCATTTGAAAAA-AGTGTCCCCATTT--CAGACAC-TTTAATGGCTACTGGCAGCAAA-CCT
23654 GTGAAAATCTCTAAATTGCTCTTTAAGAGGG-TGTGAGTTCTCAAGGTTTTGATGAAGGGATA-G
449 GT-AAAATCTC-AAA-TGCTCTTTAAG-GGGATGTGAGTTCTCAAGG-TTTGATG-AGGGATAGG
* *
23717 GGGCCAATCTAAGGGCCAAGTACTCAGCACCCA-CGCACATCATGTGCGCACA-GACCCCCACCC
508 GGGCCAATATAAGGGCCAAGTAC-CAGCACCCATCGCACATCATGTGCGCACACCACCCCCACCC
*
23780 CCAATCGTCGGAACCCCAATG-CGATCGATCAGGTTCTCCCGACGATGCTCCGACAT-GTGCCCT
572 CCAATCGTCGGAACCCCAATGCCG-TCG-TCAGGTTCT-CCGGCGATGCTCCGACATGGTGCCC-
* ** * ** *
23843 CGGTGAAAAAAAAATGCAACACCAGC-CATG-CTCGAGTCCAGTCAT-TGCACGTGGAACCCTCG
633 CGGCGAAAAAAAAATGCGGCACCAGCACATGCCT-GAGCCCAG-CATGTGCACCCGCAACCCTC-
* * *
23905 GGTTCCGGTTCGAATCTTTTACACT-GGAATGGAACTTCGTATGCTTAGATTGGGAA-GAACTCC
695 GG-TCAGG-TCGAATC--TTACACTGGGAAT-GAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
23968 GTAATGCCTAAGTCCAACCCACGAAACGAGCGTGGCAAGCGCTCAGCTGCCCAGAGGGGCAGGAT
755 GT-ATGCCTAAGT-CAACCCACGAAACGAGCGTGG--AGCGCTCAGCCGGCCAGAGGGGCAGGAT
*
24033 GCACAAGCCGGGAATCGGTCGGGTCCCCCCTAC
816 GCACAAGCCGGG-ATCGGCCGGGTCCCCCCTAC
24066 ATATTGTCGA
Statistics
Matches: 1528, Mismatches: 191, Indels: 95
0.84 0.11 0.05
Matches are distributed among these distances:
898 52 0.03
899 95 0.06
900 235 0.15
901 95 0.06
902 96 0.06
903 139 0.09
904 195 0.13
905 478 0.31
906 39 0.03
907 88 0.06
908 16 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAGAACGAGCGGGCGGGCGGCACTA
CGTCGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGCATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCACCCCCAATCGTCGGAAC
CCCAATGCCGTCGTCAGGTTCTCCGGCGATGCTCCGACATGGTGCCCCGGCGAAAAAAAAATGCG
GCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCAGGTCGAATCTTACACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGGAGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGATCGGCCGGGTCCCCCCT
ACGTACTGCCAATCCTACTCTCGCAACCCTCGGTCCAATCCA
Found at i:24985 original size:26 final size:26
Alignment explanation
Indices: 24947--24999 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24937 CTGGTCCAAT
*
24947 CTTACACTAGGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
24973 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
24999 C
1 C
25000 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:25338 original size:26 final size:26
Alignment explanation
Indices: 25298--25350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25288 CTGGTCTGAT
25298 CTTACACTGGAAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
* *
25324 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
25350 C
1 C
25351 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGAAATGAACTCCGTATG
Found at i:27074 original size:26 final size:26
Alignment explanation
Indices: 27045--27097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27035 CCAGTCTGAT
27045 CTTACACTGGGAATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
* *
27071 CTTAGACTGGGAATTAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
27097 C
1 C
27098 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:27975 original size:26 final size:26
Alignment explanation
Indices: 27936--27988 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27926 CTGGTCTGAT
27936 CTTACACTGAGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
* *
27962 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
27988 C
1 C
27989 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCGTATG
Found at i:28411 original size:890 final size:889
Alignment explanation
Indices: 26176--28670 Score: 3614
Period size: 890 Copynumber: 2.8 Consensus size: 889
26166 CCAATCTTGC
* * *
26176 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATCAGCGTGCGGGCGCTCAGTCGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CAGAGTGCGGGCACTCAGTC-GTC
* * * * * * *** ** *
26241 AGAGGGGTAGGGTACGCAAGCTGGGGATCGACCGGGTACCCCCCTGTATGCTACCAATCTTGCTA
64 AGAGGGGCAGGATGCGTAAGCCGGGGATCGGCCGGGT--CCCCCTACGTGCTACTGATCCTGC-A
* * ** * * *
26306 CTGCAACCCTTGGTCCGGTTTGATATTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGAT
126 CTGCAACCCTAGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * * * * * **
26371 TAAACGAGCGGACGGGTGGGTACTACGTCAGCCAGAGAGGCAAGATGCGCAAGCTGTGGATCGAT
191 GAAACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGATATGCGCAAGCCATGGATCGAT
* * **
26436 AGGGTGGTAGGTGGGTTTAGGCACATCTTAATCTTTCTGCCATGCCAATGCCATTTTTATGGCTT
256 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTATGGCTT
*
26501 ATAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
321 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** *
26566 ATTTCTCATAATTTTCAAAACTTTTTACGGTTGGAAAATTTTTTAAAATTTTTTCAGAAGGAGTT
386 ATTTCTCACGATTTTAAAAACTTTTTAC-GTTGGAAAATTTTTTAAAATTTTTTCAGAAGGAGTT
* *
26631 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTA
450 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* *
26696 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTTGACACTTTAA
515 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA
* * *
26761 AGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTTGAGGTT
580 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTT
* *
26826 TGATCAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
645 TGATGAGGGATA-GGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
*
26891 ACCCCCCCCCCGCGCCCCAATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTC
709 ACCCCCCCCCCGCG---C-ATCGCCGAAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTC
* * * *
26956 CGACGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCTTAGCCCAGCATGTGCCC
770 CGACGATGGTGCCCCAGGTGAAAAAAAATGCAGCACCAGCACATCCCTGAGCCCAGCATGTGCCC
*
27021 CTACAACCCTCGGTCCAGTCTGATCTTACACTGGGAATAAACTCCGTATGCTTAG
835 CTACAACCCTCGGTCCAGTCTGATCTTACACTGAGAATAAACTCCGTATGCTTAG
* * *
27076 ACTGGGAATTAACTCCGTATGCCTAAGTCAACCCAGGAAATGAGAGTGCGGGCACTCAGTCGTCT
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CAGAGTGCGGGCACTCAGTCGTC-
* * * * ****
27141 AGAGGGGCAGGATGCGTAAGCCGGGGATCAGTCGGGTCCCCCTTACGTGCTATTGATCTTTTTTT
64 AGAGGGGCAGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCC-TACGTGCTACTGATCCTGCACT
* *
27206 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
128 GCAACCCTAGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
27271 AACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGATATGCACAAGCCTTGCATCGATAG
193 AACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGATATGCGCAAGCCATGGATCGATAG
*
27336 GGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCTGTGCCAATGCCATTTTTATGGCTTGT
258 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTATGGCTTGT
* *
27401 AAATTCATACAATGGTCTCGTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
323 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
*
27466 TTCTCACGATTTTAAAAACTTTTTACAGTTGGAAAATTTTTTAAAATTATTTCAGAAGGAGTTTT
388 TTCTCACGATTTTAAAAACTTTTTAC-GTTGGAAAATTTTTTAAAATTTTTTCAGAAGGAGTTTT
27531 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
452 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* * * *
27596 AACTCAAAGTTTACAGGATTTTGTGACCATTTGAAAACAGTGTCCCCATTTTAGACACTTGAATG
517 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATG
*
27661 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTAAGGTTTG
582 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
27726 ATGAGGGATAGGGTGCCAATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-
647 ATGAGGGATAGGG-GCCAATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
* * * *
27790 GCGCCCCCC-CG-ATCGCC-AGAACCCCAATGTCGCCGGTCAGGTTCTCTGGCGATGCTCCGACG
711 CCCCCCCCCGCGCATCGCCGA-AACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGACG
* *
27852 ATGGTGCCCCAGGTGAAAAAAAATGCAGCTCCAGCACATCCCTGAGCCCAGCATGTGCCCCTGCA
775 ATGGTGCCCCAGGTGAAAAAAAATGCAGCACCAGCACATCCCTGAGCCCAGCATGTGCCCCTACA
** *
27917 ACCCTCGGTCTGGTCTGATCTTACACTGAGAATGAACTCCGTATGCTTAG
840 ACCCTCGGTCCAGTCTGATCTTACACTGAGAATAAACTCCGTATGCTTAG
* *
27967 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGAGTGCGAGCACTCAGTCGTCA
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGAGTGCGGGCACTCAGTCGTCA
* * *
28032 GAGGGGCAGGATGCGTAAGCCAGGGATCGGCCGGGTCCCCCTACGTGCTGCTGATCCTGCAGCTA
65 GAGGGGCAGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTACGTGCTACTGATCCTGCA-CTG
* *
28097 CAACCCTAGGTCTGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
129 CAACCCTAGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
28162 ACAAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGATATGCGCAAGCCATGGATCGATAGG
194 ACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGATATGCGCAAGCCATGGATCGATAGG
*
28227 GTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTATGGCTTGTA
259 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTATGGCTTGTA
* * *
28292 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACAACTCATTTTCTATT
324 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* ** * * * * * *
28357 TTTCACGATTTTTTAAATTTTTTACGCTTTGAGATTTTTTTAACATTTTTTCAGAAGGATTTTTG
389 TCTCACGATTTTAAAAACTTTTTACG-TTGGAAAATTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* * *
28422 GCCACAAACTTGGTATACGTGATCCTTGTATTTTTTTTGGCATGCGA-AAAAAAATTCAGCTAAA
453 GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAA
* * * *
28486 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAGTG
517 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATG
* *** * *
28551 GCTACTGGCACCAAACCTGTAAAATCTCAAATGTTGTTTAAGGGGGTGTGAGTTCTCGCGGTTTG
582 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
* * *
28616 ATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACTAACACCCATCACACATCAT
647 ATGAGGGATAGG-GGCCAATATAAAGGCCAAGTACCAGCACCCATCACACATCAT
28671 ATACCTAGGT
Statistics
Matches: 1438, Mismatches: 148, Indels: 28
0.89 0.09 0.02
Matches are distributed among these distances:
889 15 0.01
890 563 0.39
891 212 0.15
896 2 0.00
897 10 0.01
898 538 0.37
899 13 0.01
900 85 0.06
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (889 bp):
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAGAGTGCGGGCACTCAGTCGTCAG
AGGGGCAGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTACGTGCTACTGATCCTGCACTGCA
ACCCTAGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGATATGCGCAAGCCATGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTC
TCACGATTTTAAAAACTTTTTACGTTGGAAAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
CCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
GGGATAGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
CCCCGCGCATCGCCGAAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTG
CCCCAGGTGAAAAAAAATGCAGCACCAGCACATCCCTGAGCCCAGCATGTGCCCCTACAACCCTC
GGTCCAGTCTGATCTTACACTGAGAATAAACTCCGTATGCTTAG
Found at i:29500 original size:26 final size:26
Alignment explanation
Indices: 29464--29516 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29454 CTGGTCTGAT
29464 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
29490 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
29516 C
1 C
29517 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:32056 original size:896 final size:893
Alignment explanation
Indices: 30218--33999 Score: 5245
Period size: 897 Copynumber: 4.3 Consensus size: 893
30208 ACCCCCCCGG
* *
30218 TCAGGTTCTCCGGCGATACTCCGACGATGGTGCCCCGAGTGAAAAAAAATATGGCACCAGCACAT
1 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGTGAAAAAAAATATGGCACCAGCACAT
* * * * *
30283 GCTCGAGCCTAACACGTGCACCCGCAA-CCTTCGGTCCGATCTGATCTTACACTGGGAATGAACT
66 GCCCGAGCCCAGCATGTGCACCCGCAACCCTT-GGTCCG-TCCGATCTTACACTGGGAATGAACT
* * * * * *
30347 CTATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACTCATGAAACGAGCATACGGGT
129 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGT
* * * *
30412 GCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGAGGGATCGATCGGGTCCCCCCTGCATGCTG
194 GCTCAGCCGGCCAGAGGGGCAGGATGAGCAAGCCG-GGGATCGACCGGGTCCCCCCTGCGTGCTG
* *
30477 CCGATCTTGCTATC-ACAACCCTCGGT-CTGGTCAATCTTAGACTGGGAATGAACTCCGTATGCC
258 CCGATCTTGCTA-CGACAACCCTCGGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCC
* *
30540 TAAGCCTACCGACGAAACGAGCGGGGGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAA
322 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAA
* *
30605 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTTGCCAATGCC
387 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
*
30670 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCATGA
452 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
30735 CGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTT
517 CGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTT
* *
30800 TTCAAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAA
582 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAA
*
30865 AATATT-AGCTAAAAACTCGAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
647 AAAATTCAGCTAAAAACTCG-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
30929 T-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
711 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
30993 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
776 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
31058 ATCATGTGGCACACACCCCCCACCCCCCCAATCGTCGGAACCCCAATGCCGTCGG
841 ATCATGT-GCGCACACCCCCC-GCCCCCCAATCGTCGGAACCCCAATGCCGTCGA
* * *
31113 TCAGGTTCTTCGACGATGCTCCGACGATGGTTCCTCGAGTGAAAAAAAATATGGCACCAGCACAT
1 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGTGAAAAAAAATATGGCACCAGCACAT
*
31178 GCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCCAGTCTGATCTTACACTGGGAATGAACTC
66 GCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCC-GTCCGATCTTACACTGGGAATGAACTC
* *
31243 TGTATGCTTAGACTGGGAATGAACT-CGATATGCCTAAGTCAACCCACAAAATGAGCATGCGGGC
130 TGTATGCTTAGACTGGGAATGAACTCCG-TATGCCTAAGTCAACCCACGAAATGAGCATGCGGGT
* * * *
31307 GCTCAGCTGGCCAAAGGGGTAGGATGAGCAAGCTGGGGATCGACCGGGTCTCCCCCTGCGTGCTG
194 GCTCAGCCGGCCAGAGGGGCAGGATGAGCAAGCCGGGGATCGACCGGGTC-CCCCCTGCGTGCTG
* *
31372 CCGATCTTGCTACGACAACCCTCAGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCT
258 CCGATCTTGCTACGACAACCCTCGGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCT
31437 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAG
323 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAG
31502 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
388 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
31567 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCATGTGAAGTTTCATGGCAAGAC
453 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
31632 GACTCGTTTTCTATTTTTCACAATTTTTGAAAACTTTTTACAGTTTGGGATTTTTTTAAAATTTT
518 GACTCGTTTTTTATTTTTCACGATTTTTG-AAACTTTTTACGGTTTGGGATTTTTTTAAAATTTT
* ** ** ** *
31697 TTCAGAAGGTGTTTTCACGACAAACTTGAAAGACGTGATCCTTATATTTTTTTTGGCATGCACAA
582 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AA
31762 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
646 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
31827 TCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
711 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
31892 AGTTCTCAAGGTTTGATGAGGGATAGAGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
776 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * * *
31957 ATCTTGTAAGCACACCCCCCGCCCCCTAATCGTCGGAACCCTAACGCCGCCGA
841 ATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGA
* * ** * * ** *
32010 CCAGGTTCTCCAACGATGCTCCGGTGATGGTGGCCCGGGCAAAAAAAAAT-TAGGCACCAGCTCA
1 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGTGAAAAAAAATAT-GGCACCAGCACA
* * * *
32074 TGCCCGAGCCCAGCATGTGCACTCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAATGCACT
65 TGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCCG-TCCGATCTTACACTGGGAATGAACT
* *
32139 CTGTATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGT
129 CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGT
* * * * * *
32204 GTTCAACCAGCCAGAGGGGCAGGAT-ACGCAAGCCGGAGGATCGGCCGGGTCCCCCCTGTGTGTT
194 GCTCAGCCGGCCAGAGGGGCAGGATGA-GCAAGCCGG-GGATCGACCGGGTCCCCCCTGCGTGCT
** * * * * *
32268 GTTGATCTTGTTGCTG-CAACCCTCGGTCTAGTCCAATCTTAGACTGGTAATGAACTCCGTATGC
257 GCCGATCTTGCTAC-GACAACCCTCGGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * **
32332 CTAAGCCAACCGACGAAACGAGCAGACGAGCGGGCACTACGCTGGCTAGAGAGGCGGGATAAGCA
321 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCA
* *
32397 AGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTTTGCCATGCCAATGC
386 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
32462 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
451 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
*
32527 ATGACTCG-TTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAAATTT
516 ACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAAATTT
32591 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACA
581 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-A
32655 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
645 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
32720 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
710 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
32785 GAATTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
775 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
32850 CATCATGTGCGCACA-CCCCCACCCCCCAATCGTCAGAACCCAAATGCCG-CTA
840 CATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGA
* *
32902 GTTAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGAGCGAAAAAAAA-ATGCGGCACCAGCA
1 -TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGTGAAAAAAAATAT--GGCACCAGCA
* * *
32965 CATGCTCGAGCCCGGCATGTGCACTCGCAACCCTTGGTCCG---G----T-C-C--------AA-
63 CATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCCGTCCGATCTTACACTGGGAATGAAC
* *
33012 TCT-TA--C----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGG
128 TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGG
* * * * * * *
33070 CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGAGGATTGATCGGGTCCCACCCTGCGTGAT
193 TGCTCAGCCGGCCAGAGGGGCAGGATGAGCAAGCCGGGGATCGACCGGGTCCC-CCCTGCGTGCT
** * * * * ** ** *
33135 ATCAATCCTGCTACCACAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCCATATGCC
257 GCCGATCTTGCTACGACAACCCTCGGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * ** * * *
33200 TAAGCCAATCGACGAAACGAGCGGGTGGGCGGGCACTACGTCGGCCAGAGACGTGGGATTCGCAA
322 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAA
*
33265 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
387 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
* * *
33330 ATTTTTATGGCTTGTAAATTCATAAAATTGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGA
452 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * *
33395 CGACTTGTTTTTTTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTTAAAA-TT
517 CGACTCG-TTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAAATTT
*
33459 TTTCAGAAGGAG---T----------TT--T-GACGTGATCCTTGTATTTTTCTTGGCATGCAAA
581 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAA
*
33508 AAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
646 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
33573 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTG
711 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
33638 AGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-GCACCCACCACAC
776 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *** *
33702 ATCATGTGCGCATAGACCCCCTGCCCCCCCAATTACCGGAACCCCAATGCCGTCGG
841 ATCATGTGCGC--ACACCCCCCG-CCCCCCAATCGTCGGAACCCCAATGCCGTCGA
* * ** * *
33758 TCAGTTTCTCTGGTGATGCTCC-AGCGATGGTGCCCCGAGCGAAAAAAAAATGTGGCACCAGCAC
1 TCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGAGTG-AAAAAAAATATGGCACCAGCAC
* * *
33822 ATG-CCGAGCCCAGCATGTGCACCCGTAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAAC
64 ATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCC-GTCCGATCTTACACTGGGAATGAAC
* * * *
33886 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATAAGCGTGCGGG
128 TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGG
* * * * * *
33951 TGCTCAGCCAGCCAGAGGGGTAGGATGAGGAAGTCGAGGATCAACCGGG
193 TGCTCAGCCGGCCAGAGGGGCAGGATGAGCAAGCCGGGGATCGACCGGG
34000 ACCTCATTTG
Statistics
Matches: 2577, Mismatches: 250, Indels: 134
0.87 0.08 0.05
Matches are distributed among these distances:
851 22 0.01
852 192 0.07
853 17 0.01
854 5 0.00
855 79 0.03
856 24 0.01
857 8 0.00
858 1 0.00
859 1 0.00
863 1 0.00
864 1 0.00
865 2 0.00
866 13 0.01
867 318 0.12
868 14 0.01
869 50 0.02
871 1 0.00
873 4 0.00
874 5 0.00
875 3 0.00
877 1 0.00
881 86 0.03
883 1 0.00
884 1 0.00
885 1 0.00
889 1 0.00
892 17 0.01
893 102 0.04
894 235 0.09
895 307 0.12
896 279 0.11
897 563 0.22
898 79 0.03
899 143 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGTGAAAAAAAATATGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCCGTCCGATCTTACACTGGGAATGAACTCT
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGC
TCAGCCGGCCAGAGGGGCAGGATGAGCAAGCCGGGGATCGACCGGGTCCCCCCTGCGTGCTGCCG
ATCTTGCTACGACAACCCTCGGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
TCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTCA
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGA
Found at i:32149 original size:26 final size:26
Alignment explanation
Indices: 32120--32172 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32110 CTGATCCGAT
* *
32120 CTTACACTGGGAATGCACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
32146 CTTAGACTGGTAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
32172 C
1 C
32173 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:33897 original size:26 final size:26
Alignment explanation
Indices: 33868--33920 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33858 CCGGTCCGAT
33868 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
33894 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
33920 C
1 C
33921 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:41553 original size:26 final size:27
Alignment explanation
Indices: 41524--41577 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
41514 CTAGTCCGAT
41524 CTTACACTGGGAATGAAC-TCCGTATG
1 CTTACACTGGGAATGAACTTCCGTATG
*
41550 CTTAGACTGGGAATGAACTTCCGTATG
1 CTTACACTGGGAATGAACTTCCGTATG
41577 C
1 C
41578 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTACACTGGGAATGAACTTCCGTATG
Found at i:42431 original size:26 final size:26
Alignment explanation
Indices: 42402--42454 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
42392 CCAGTCCGAT
42402 CTTACACCAAGAATGAACTCCGTATG
1 CTTACACCAAGAATGAACTCCGTATG
* ***
42428 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACCAAGAATGAACTCCGTATG
42454 C
1 C
42455 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTACACCAAGAATGAACTCCGTATG
Found at i:44637 original size:894 final size:894
Alignment explanation
Indices: 39923--53321 Score: 19387
Period size: 894 Copynumber: 15.0 Consensus size: 894
39913 CAGTCCGATC
*
39923 CTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACG-AACGAAGTGGGCGGGCG
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-AGCGGGCGGGCG
*
39986 GGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
65 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
40051 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 AGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
40116 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
40181 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
260 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
*
40246 GACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTTAGCTAAAAACTCGAAGTGTACAG
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
40310 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
40375 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
40440 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATC
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATC
* *
40505 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCC-GGCGAAA
585 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGGGCG-AA
** * * *
40569 AAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCATTTCGGTCTG
649 AAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCG
*
40634 ATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC----GCCTAAGTCAAC
714 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * **
40695 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGAC
779 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGT
* *** * * * * * *
40760 CGGGTCCCCCCTGCATGCCATCAATCCTGCTACTGCAACCCTTGGTCCGAT
844 CGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTGATCTGGT
** * *
40811 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCCG
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* ** ** *
40876 GCACTACGCCAGTTAGAGAGGCGGGATAAGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
40941 GGCACATCTTCATATTTTT-CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
41005 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-AA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
41069 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
261 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
41134 ACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
41198 ATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
391 ATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
41263 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
41327 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAAT
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCAAT
* *
41392 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGGGCGA
584 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC-TCCGCGATGGTGCCCCGGGCGA
* *
41457 AAAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CCGCAACCCTCGGTCTAGTCC
648 AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCC
41521 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCCGTATGCCTAAGTCA
713 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCA
* * *
41586 ACCCACGAAATGAGCGTGC--GCGCTCAGCCGG-CAGAGGGGCAGGATGCGCAAG-CGGGAATCG
777 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCG
* * * * * * *
41647 ATCGGGTCCCCCTTGTGTGCTGTCAATCCTACTACCGGC-ACCCTTCGATCT-G-
842 GTCGGGTCCCCCCTGCGTGCTGCCGATCCTACT-GCTGCAACCCTT-GATCTGGT
** *
41699 CCAATCTTAGA-TGGGAATGAACT-CGTATGCCTAAGCCAA-TGACGAAACGAGC-GGCGGGCGG
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
41760 GCACTACGCCGGCCAGAGAGGC---ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
41822 GGCACATCTTCATATTTTTG--ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
41885 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAGATTTTTAA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-GATTTTTGA
41950 AACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCAGAAGGA-TTTTGGCCCCAAACTTGGTA
260 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
42013 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
42078 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
42143 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* **
42207 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTTTGCACACCCCCCCGCCCCCCAAT
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCAAT
* *
42272 CGTCAGAACCACAAT---GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGA
584 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGGGCGA
* *** * *
42334 AAAAAAATGTGGCACCAACACATGCTTAAGCCCAGCATGTGCACCCGCAACCTTCGATCCAGTCC
648 AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCC
***
42399 GATCTTACACCAAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
713 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
42464 CCCATGAAACGAGCGTGCAGGG-ACTCAGCCGACCAGAGGGGCAGGATGCGCAAGTCGGGGATC-
778 CCCACGAAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCG
* * * * ** * **
42527 GACCGGTCCCCCCTGCATGCTGCCGATCCTACTACCACAACCC-TCAGTC-CAT
842 GTCGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTGA-TCTGGT
42579 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
42644 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
42709 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
42774 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
*
42839 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
261 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
42904 ACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
42968 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
43033 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
43098 AATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGTGCACA-CCCCCG-CCCCCAATCA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCG
* * * ** * *
43161 CCAGAACCCCAATGCCGTCGGT-AGGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGGGTGAA
586 TCGGAACCCCAATGCCGCCGGTCA-GGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGGGCGAA
* ** * * *
43225 AAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGTTCCCTCGACCCTCGGTCCTGTCCG
649 AAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCG
* * * * *
43290 ATCTTACACTGGGATTAAAGTCCGTATGCTTAGACTGGGAATGAACT-CTTATGCCTAAATCAAC
714 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
43354 CCACAAAACGAGCGTGCGGGGGCTCAGCCGGCCAAAGGGGCAGGATGCACAAGTCGGGGATCGGT
779 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGT
** * * * * ** * * *
43419 CGGGTCCCCCCCTATGTACTGCCAATCTTGCTGCCACAACCCTCGGTCTGAT
844 CGGGT-CCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTGATCTGGT
*
43471 -TCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
1 CT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * * * *
43535 GGCATTACGTCAGCCAGGGAGGCGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTT
65 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
43600 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 AGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
43665 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
43730 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
260 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
43795 GACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
43859 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
43924 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
43989 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATC
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATC
* * *
44054 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGAGTGAAA
585 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGGGCGAAA
*** * * * ** * ** *
44119 AAAAATGCAACACCAGCACATGCTCGAGCCCAACATATGCACCTACAACCCTTGGTCTTGTCTGA
650 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCGA
** * *
44184 TCTTACACTGGGAATGAACTTTGTATGTTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
715 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
44249 CACGAAACGACCGTGCGGGTGCTCAGCCGGCCAGAGGGGCTGGATGCACAAGCCAGGGATCGGCC
780 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTC
* * * *
44314 GGGTCCCCCACTGCGTGCTACCGATCCCATTGTTGCAACCCTTGATCTGGT
845 GGGTCCCCC-CTGCGTGCTGCCGATCCTACTGCTGCAACCCTTGATCTGGT
* * * * *
44365 CTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAATGAAACGAGCGGGCAGGCGA
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * * * * *
44430 GCACTACGTCGGCCAGAGAGGCAGGATACGCATGTCGTGGATCGACAGGGTGGTAGGTGGGTTTT
66 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
44495 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
** * *
44560 CCTTAAAACTTGATGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
44625 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
261 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
44690 ACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
44754 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
44819 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
44884 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCG
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCG
* *
44949 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGGCGAAA
586 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGGGCGAAA
* * *
45014 AAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGA
650 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCGA
*
45078 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAAATGAACTCCGTATGCCTAAGTCAAC
715 TCTTACACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAAC
* *
45143 CCATGAAACGAGGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATC-G
779 CCACGAAACGA-GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGG
* * * *
45207 ACCGGTCCCCCCTGCGTACTGCCAATCCTACTGC--CAACCCTTG-TC-GGT
843 TCGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTGATCTGGT
*
45255 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCTGACGAAACGAAGCGGAC-GGC
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-GACGAAACG-AGCGGGCGGGC
* *
45319 -GGCACT--GACGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
64 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
45381 TAGGCACATCTTCATATTTCTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TAGGCACATCTTCATATTT-TTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
45446 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAACTCGTTTTCTATTTTTCACGATTTT
193 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG-ACTCGTTTTCTATTTTTCACGATTTT
*
45511 TCAAACTTTTTAC-GTTCGAGAATTTTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCCCCAAACT
257 TGAAACTTTTTACGGTTCGAG-A-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * * *
45574 TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTG
320 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * * * * *
45639 TACAAGATTTTGTGACCAATTGAAGAAAGTGTCCCCATTTTAGACAATTTAGTGGCTACTAGCAG
385 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
45704 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
450 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * * *
45769 GGGGCCAATATAAGGGCCAAGTAGCAGCACGCATCGCACATCGTGTGCACACACCATCCCGCCGC
515 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGCCCC
* ** ***
45834 CTAATCACCGGAACCCCAATGCTTTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
579 CCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCG
* *** * * * * ** *
45899 GGTGAAAAAAAATGCAACACCAGCACATGCTCGAGCCAAGCATATGCACCTGCAACCCTCATTCT
643 GGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCC
* * * * *
45964 GGTCTGATCTTACACTGGGAATGAACTCTGTATGTTTAGACTGGGAATGAACTCCATATGCCTAA
708 AGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
46029 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCAGGG
773 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGG
* * * *
46094 ATCGGTCGGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCTGCAACCC-TCAGTCTGGT
838 ATCGGTCGGGTCCCCCCTGCGTGCTGCCGATCCTACT-GCTGCAACCCTTGA-TCTGGT
46152 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
*
46217 GCACTA-ACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
46281 GGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
46346 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
*
46411 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCC-AACTTGGTAG
261 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
46474 ACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
46538 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
46603 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
46668 AATATAAGGGCCAAGTACCAGCACCCATCACACAACATGTGCGCACACCCCCC-CGCCCCCTATC
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC-CCCCCAATC
* * * * * *
46732 ATCGGAACCCCAATGCCGCCGATTAGGATCT-C--CG--G-T----GATGGTGCCCTGGGTGAAA
585 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGGGCGAAA
* * * * * *
46787 AAAAATATGGCACCAGCACATG-CCGAAGCCTAGCATGTGCACCCTCAACCCTCAGTTCAATCCG
650 AAAAATGTGGCACCAGCACATGCCCG-AGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCG
* * * * *
46851 ATCTTACATTGGGAATGAAGTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAGGTTAAC
714 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * **
46916 CCATGAAACGAGCGTGCGGGCGCTTAGCCGGTCGGAGGGGCAGGATG-AGCAAGTCGGGGATCAA
779 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCA-CAAGCCGGGGATCGG
* * * * * * * *
46980 TCGGATCCCCCCCTGTGTGCTACCGATCTTGCTGCTGTAACCCTCGGTCTGGT
843 TCGGGT-CCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTGATCTGGT
* ** * * **
47033 CCGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAATGGGCGGGCGG
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * *
47098 GCACAACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGAATCGATAAGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
47163 GGCACATCTTCATATTTTTGCCATGTCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
47228 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
*
47293 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
261 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
47358 ACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
47423 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
47488 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
** * **
47553 AATATAAGGGCCAAGTACCAGCAGGCATCGCACATCGTGTAAGCACACCCCCCGCCCCCCTAATC
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCC-AATC
* ** * * *
47618 GTCAGAACCTTAATGCCGCCGGTCAAGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGGGCGAA
585 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGGGCG-A
*** * * * *
47683 AAAAAAATGCCACACCAGCACATGCCTGAGTCCAGCATGTGCACCCACAACCCTCAGTCCAGTCC
648 AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCC
* *
47748 GATCTTGCACTGGGAATGAAATCCGTATGCTTAG-CTGGGAATGAACTCCGTATGCCTAAGTCAA
713 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** *
47812 CCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAAGATGCGGAAGCCGGGGATTGG
778 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGG
* * * *
47877 TCGGGTCCCCCCTGCATGCTGCTGATCCTACTGCTGCAA-CCTTCAGTTTGGT
843 TCGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTGA-TCTGGT
** * *
47929 CCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * *
47994 ACGCTACGCC-GTCAGAGAGCCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
48058 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
48123 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
*
48188 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
261 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
48253 ACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
48318 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
**
48383 TGTAAAATCTCAAATGCTCTTTAA-GGGG-GTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
48446 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATC
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCAATC
* * * *
48511 G-CGGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCAATGCTCCGGCGATGGTGCCTCGGGCAA
585 GTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGGGCGA
* * * ** *
48575 AAAAAAATGTGGCACCAGCACATGCCTGAGCCTAGCATGTGCATCCGCAACCCTCGGTCTGGTTC
648 AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCC
* *
48640 GATCTTACATTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAA
713 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
48705 CACATGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGG
778 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGG
* ** * * * ***
48770 TCGGGTCCCCCCTACGTGCTATCGATCCTA-TAACCT-CAACCCTCGGTCCAAT
843 TCGGGTCCCCCCTGCGTGCTGCCGATCCTACT--GCTGCAACCCTTGATCTGGT
* * * * *
48822 -TGGATCTTAGATTGGGAATGATCTCCGTATGCCTAAGGCAACCGACGAAACGAGCGTGCGGGAG
1 CT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* *
48886 GGCACTACGCCAGCCATAGAGGCGGGATGCGCAAGTCC-TGGATCGATAGGGTGGTAGGTGGGTT
65 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG-CCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * *
48950 TAGGCATATCTTCTTATTTTTGCCTTGCCAATGCCATTTTTATGGCTTGTAAATTGATACAACGG
129 TAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
49015 TCCCTTAAGCCTTCATGTGAACTTTCATTGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
49080 AAACTTTTTACAGTTTGTGATTTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAACTTGGT
259 AAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
*
49145 AGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
49210 GGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACGGGCAGCAAA
389 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
49275 CCTGTAAAATCTCAATTGCTCTTTAAAGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** * **
49340 CCAATATAAGGGCCAAGTACCAGCAGGCATCGCACATCGTGTAAGCACACCCCCCGCCCCCCTAA
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCC-AA
* ** * * *
49405 TCGTCAGAACCTTAATGCCGCCGGTCAAGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGGGCG
583 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGGGCG
*** * * * *
49470 AAAAAAAAATGCCACACCAGCACATGCCTGAGTCCAGCATGTGCACCCACAACCCTCAGTCCAGT
647 -AAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGT
* *
49535 CCGATCTTGCACTGGGAATGAAATCCGTATGCTTAG-CTGGGAATGAACTCCGTATGCCTAAGTC
711 CCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * ** *
49599 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAAGATGCGGAAGCCGGGGATT
776 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATC
* * * *
49664 GGTCGGGTCCCCCCTGCATGCTGCTGATCCTACTGCTGCAA-CCTTCAGTTTGGT
841 GGTCGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTGA-TCTGGT
** * *
49718 CCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * *
49783 ACGCTACGCC-GTCAGAGAGCCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
49847 GGCACATCTTCATATTTCTGCCATGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
49912 CCTTAAGCCTTCATGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
49977 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTATTCAGATGGAGTTTTGGCCCCACACTTGGTAG
261 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
** * * *
50042 ATATGATCATTGAATTTTTGTTGGCATGCAC-AAAAAATTTAGCTAAAAACTCGAAGTGTACAGG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
*
50106 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
** *
50171 TGTAAAATCTCAAATGCTCTTTAAAAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
50236 AATATAGGGGCCAAGTACCGGCACCCATCCCACATCATGTGCGCACACCCCCC-CACCCCCAATC
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC-CCCCCAATC
* * *
50300 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGATGATGCTCCGGTGATGGTGCCCCGGGCGAA
585 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGGGCG-A
** *
50365 AAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCC-GATC
648 AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAG-TC
*
50429 CGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
712 CGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * * * **
50494 ACCCACGAAACGAGCGTGCGGGCGCTCAACTAGCCAGAGTGGTAGGATGCACAAGTCGAAGATCG
777 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCG
* * * * * *
50559 GTTGGGTCCCCCCTACGTGCTACTGATCCTACTGCTGCAACCC-TCAGTCTCGT
842 GTCGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTGA-TCTGGT
** * ** * * * * *
50612 CCAATCTTAGACTGGGACTGAACTCTTTATGCGTAAGCCAATCGATGAAACGAGAGGACGGGCGG
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
** * * *
50677 GGGCTACACCGGCCTA-AGAGGCGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
66 GCACTACGCCGGCC-AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
50741 AGGCACATCTTTATATTTCTGCCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGT
130 AGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* **
50806 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
50871 AACTTTTTACGATTCGAGATTTTTTTAAAAAATTTTTCAGAAGGATTTTTGGCCCCAAACTTTGT
260 AACTTTTTACGGTTCGAGATTTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* *
50936 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
51001 AGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
51066 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTCTCGAGGTTTGATGAGGGATAGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-TTCTCGAGGTTTGATGAGGGATA-GGG
* * *
51131 GGCCAATATAAGGGCCAAGTACC--CACCCATCCCACATCATGTGTGCGCACCCCCC-CCCCCGC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCC-C
* * * *
51193 CATCGTCGGAA-CCCAATGCCGCCGGTCAGGGTTCTCC-CCAATGCTCCGACGAAGGTGGCCCCG
581 AATCGTCGGAACCCCAATGCCGCCGGTCA-GGTTCTCCGACGATGCTCCG-CGATGGT-GCCCCG
* * *
51256 GGTGAAAAAAAATG-CG-ACCAGCACATGCCCGAGCCCAGCCATGTGCACCCACAACCCTCGGTC
643 GGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAG-CATGTGCACCCGCAACCCTCGGTC
** * *
51319 TGGTCTGATCCTTACACTGGGAATG-ACTCC-TATACTTAGACTGGGAATGAACTCCGTAAT-CC
707 CAGTCCGAT-CTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT-ATGCC
* * ** *
51381 TAAAGTCAACCCACGAAACCGAGCGTGCGGGCGCTCCGCTGGCCAGGAGGGGCAGGATGTGCCAG
770 T-AAGTCAACCCACGAAA-CGAGCGTGCGGGCGCTCAGCCGGCCA-GAGGGGCAGGATGCACAAG
** * * * * * * ** *
51446 CCGTCGATCGATCAGGGT-CCCCC-ACGTGCATGCCGATCATGCTGCCGTAACCC-CAATCCGGT
832 CCGGGGATCGGTC-GGGTCCCCCCTGCGTGC-TGCCGATCCTACTGCTGCAACCCTTGATCTGGT
*
51508 CCCGTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGGCG
1 --C--TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGGCG
51573 GGCGGGCACTACGCCGGCCAGAGAGAGCGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGT-
61 GGCGGGCACTACGCCGGCCAGAGAG-GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
51636 GGTTTTGGCACATCTTCATA-TTTTGCCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACA
125 GGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
51700 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
190 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * **
51765 TTCGAAACTTTTTACGGTTCGAGAATTTTTTAAAATTTTTTCAGATGGAGTTTTCACCCCAAACT
255 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* *
51830 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTG
320 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
51895 TACAAGGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
385 TAC-AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
51960 GTAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
449 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
52025 AGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCAGC-TCATGTGCGCACACTGCCCCGCC
514 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA-CATCATGTGCGCACAC-CCCCCG-C
** *
52089 CCCCCAATCACCGGAACCCC-ATGCCCCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG-C
576 CCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCC
* * **
52152 CTGGGTG-AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCAA
640 CCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGG
* * *
52216 TGCAGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCC
705 TCCAGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
52281 TTAGTCAACCCACGAAACGAGCATGCGAGCGCTTAGCCGGCCAGAGGGGCAGGATGCACAAGCCA
770 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCG
* ** * * * * * * *
52346 GGGATCGGTCGAGTCCCCCCATGTATGTTGCTGATCCTACTACCGTAACCCTTGGTCTGAT
835 GGGATCGGTCGGGTCCCCCC-TGCGTGCTGCCGATCCTACTGCTGCAACCCTTGATCTGGT
** * *
52407 CCAATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----------GT
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * * *
52462 GC-C--CGCCCGCCAGAAAGACGGGATGCGCAAGCCGTGGATTGATAGGTTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
52524 GGAACATCTTCATATTTTTACCAT-CCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
** * **
52588 CCTTAAGCCTTCATGTGAAGTTTCATTTCAAGACGACTCGTTTT-TGATTTTTCATGATTTTCAA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCACGATTTTTGA
*
52652 AACTTTTTACGG-TC-AGGATTTTTTTAAAATTTTTT-AGAAGGAG-TTTGGCCCCCAACTTGGT
260 AACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
52713 AGACATGATCCTTGTATTTTT-TTGGCATGCA-TAAAAAATTCAGCTAAAAACTTGAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
52776 -GTTTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAAACACTTTAACGGCTACTGGCAGCAAA
389 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
52839 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
52904 CCAATATAAGGGCCAAGCACCAGCACCCATTGCACATCATGTACGCACACCCCCCGCCCCCCAAT
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAAT
* * * * * ** *
52969 CGTCGGAACCCCAATGCCGTCGGTCAGGTTATCCGACGAAGCTCTGATGATGGTGCCCTTGGTGA
584 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGGGCGA
* *
53034 AAAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCC
648 AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCC
* * * *
53099 AATCTTACACTGGGATTGAACTTCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAA
713 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * *
53164 CCCACGAAACGAGCGTGCGGGCGCTCAGCTAGCCAGAGGGGTAGGATG-AGTAAGCCAGGGATC-
778 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCA-CAAGCCGGGGATCG
* * * * * * *
53227 GACTGGGTCCCCCCTACGTGCTACCAATCCTGCTACTGCAA-CCTTCGATTTGGT
842 GTC-GGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTT-GATCTGGT
*
53281 CTGATCTTAGACTGGGAATGAACTCTGTATG-CTAAGCCAAC
1 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
53322 TAA
Statistics
Matches: 11334, Mismatches: 983, Indels: 403
0.89 0.08 0.03
Matches are distributed among these distances:
872 20 0.00
873 54 0.00
874 198 0.02
875 206 0.02
876 3 0.00
877 142 0.01
878 73 0.01
879 49 0.00
880 413 0.04
881 470 0.04
882 416 0.04
883 24 0.00
884 101 0.01
885 226 0.02
886 44 0.00
887 309 0.03
888 437 0.04
889 667 0.06
890 416 0.04
891 317 0.03
892 849 0.07
893 873 0.08
894 1708 0.15
895 1097 0.10
896 678 0.06
897 610 0.05
898 364 0.03
899 340 0.03
900 127 0.01
901 69 0.01
902 34 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCG
TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGGGCGAAAA
AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCGAT
CTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCG
GGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTGATCTGGT
Found at i:45108 original size:26 final size:27
Alignment explanation
Indices: 45079--45132 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
45069 CCGGTCCGAT
*
45079 CTTACACT-GGGAATGAACTCCGTATG
1 CTTACACTAGGAAATGAACTCCGTATG
*
45105 CTTAGACTAGGAAATGAACTCCGTATG
1 CTTACACTAGGAAATGAACTCCGTATG
45132 C
1 C
45133 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (27 bp):
CTTACACTAGGAAATGAACTCCGTATG
Found at i:50462 original size:26 final size:26
Alignment explanation
Indices: 50433--50485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
50423 CCGATCCGAT
*
50433 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
50459 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
50485 C
1 C
50486 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:52256 original size:26 final size:26
Alignment explanation
Indices: 52227--52279 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
52217 GCAGTCTGAT
*
52227 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
52253 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
52279 C
1 C
52280 CTTAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:53138 original size:26 final size:26
Alignment explanation
Indices: 53102--53154 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
53092 CCGGTCCAAT
* * *
53102 CTTACACTGGGATTGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
53128 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
53154 C
1 C
53155 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Done.