Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167936.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_199, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52286
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Found at i:1226 original size:26 final size:26
Alignment explanation
Indices: 1197--1249 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1187 CCAATCTGAT
1197 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
1223 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
1249 C
1 C
1250 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:1725 original size:159 final size:159
Alignment explanation
Indices: 1222--1738 Score: 483
Period size: 159 Copynumber: 3.3 Consensus size: 159
1212 AACTCTGTAT
* * * *
1222 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAATGAGCGTACGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCGTACGGGCACTGAG
* * * * * * *
1287 CCGACCGGAGAGGCATAATGTGTAAGCCAGGGATCGACCCAATCCCCCTCTACGTGCTGCCAGTC
66 CCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGAT-CCCCTCTACGTGCTGTCGGTC
* * *
1352 TCGCTGCCACAACCCTC-GGTCTGACTGGG
130 CCGCTGCCACAACCCTCAGTTCGGACTGGG
* * * * * *
1381 GCTTAGACAT-GGAATGAACTCCGTATCCCT-AGGCTAACCTACAAAACGAGCGTACGGGCACTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTC-AACCCATAAAACGAGCGTACGGGCACTG
* * * * * * * * * *
1444 AGTCGATCGGAGAGGCAGAATGCACAAGTCAAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGAT
64 AGCCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTACGTGCTGTCGGT
** * * * *
1509 -CCGACTGCTGCAACCCTCAATCCGGTCT-GA
129 CCCG-CTGCCACAACCCTCAGTTCGGACTGGG
* ** * * **
1539 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGGAACGAGCATGCGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCGTACGGGCACTGAG
* * *
1604 CCGATCGAACAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCATCTACGTGTTGTCGGTC
66 CCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCC-TCTACGTGCTGTCGGTC
1669 CCGCTGCCACAACCCTCAGTTC-GACTGGG
130 CCGCTGCCACAACCCTCAGTTCGGACTGGG
* *
1698 GCTTAGACAT-GGAATGAACTCCCTATGCCA-AAGCCAACCCA
1 GCTTAGAC-TGGGAATGAACTCCGTATG-CATAAGTCAACCCA
1739 CGAAATGGGC
Statistics
Matches: 278, Mismatches: 69, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 118 0.42
159 150 0.54
160 7 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCGTACGGGCACTGAG
CCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTACGTGCTGTCGGTCC
CGCTGCCACAACCCTCAGTTCGGACTGGG
Found at i:2676 original size:159 final size:156
Alignment explanation
Indices: 2373--2794 Score: 386
Period size: 159 Copynumber: 2.6 Consensus size: 156
2363 AACTCTGTAT
* * * * * *
2373 GCTTAGACATGGAATGAACTCCGTAAGCCTAAGCTAACCACAAAACGAGCGTGCAGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGC-AACC-CAAAACAAGCGTGCGGGTGCTGAGC
* * * * *
2438 CGGTCGGAAAGGTAGAAATGTGCAAGCCAGGGATCGGCCCGATCCCCCCCTGCGTGCTATCGATC
64 CGGTCGGAGAGGCA-AAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCATGCTATCGATC
* ** *
2503 CTACTGCCGTAACCCTCAGTTCAG-TCAGA
128 CCACTGCCACAACCCTCAGTCCAGCT-AGA
* *
2532 TCTTAGTC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CAACCCA--AAACAAGCGTGCGGGTGCTGA
* * * * * * *
2596 GCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCTCCTCTGTATGCT-GCTGG
62 GCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCATGCTATC-GA
* *
2660 TCCCACTGCCACAACCCTCAGTCCAGCTGGG
126 TCCCACTGCCACAACCCTCAGTCCAGCTAGA
* * *
2691 GCTTAGACATGGAATGAACTCCCTATGCCTCAGCCAACCCACAAAACGAA-TGTGCGGGTGCTCG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAG-CAA-CC-CAAAAC-AAGCGTGCGGGTGCT-G
* * * *
2755 A-CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCC
61 AGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCC
2795 TTGTCCCCCC
Statistics
Matches: 216, Mismatches: 36, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
158 4 0.02
159 170 0.79
160 40 0.19
161 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCAACCCAAAACAAGCGTGCGGGTGCTGAGCCG
GTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCATGCTATCGATCCCA
CTGCCACAACCCTCAGTCCAGCTAGA
Found at i:6437 original size:24 final size:24
Alignment explanation
Indices: 6398--6457 Score: 99
Period size: 23 Copynumber: 2.6 Consensus size: 24
6388 GTTCCATGTG
6398 ATGCTTAA-CCGTTCCATGTGAGC
1 ATGCTTAAGCCGTTCCATGTGAGC
6421 ATGCTTAAGCCGTTCCATGTGAGC
1 ATGCTTAAGCCGTTCCATGTGAGC
6445 -TGCTTAAG-CGTTC
1 ATGCTTAAGCCGTTC
6458 ATGAGGAGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
22 5 0.14
23 16 0.44
24 15 0.42
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (24 bp):
ATGCTTAAGCCGTTCCATGTGAGC
Found at i:8151 original size:159 final size:158
Alignment explanation
Indices: 7861--8385 Score: 500
Period size: 159 Copynumber: 3.3 Consensus size: 158
7851 GTCCTACTAC
* * * * *
7861 CGCAATCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACCCACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCAAACCCACG
* * * * * *** *
7926 AAACGAGCGTGCAGGTGCTCAGCCAGCCGAAGAGGTAGAATGCGCAAGTTAGGGATCGACCTGAT
66 AAACGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGAT
7991 CCCCCCTGTGTGCTGTCGATCCTGCTGT
131 CCCCCCTGTGTGCTGTCGATCCTGCTGT
* * * *
8019 CGCAACCCTCAGTCTGGTCTGATCTTAGACTAAGAATGAACTTCGTATGCATAAGTCAAACCCAT
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAG-CAAACCCAC
* * * * *
8084 GAAACCAGCGTGCAGGCGTTGAGCTGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGACCCGA
65 GAAACGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGA
* * * *
8149 TCCCCCTCTGTGTGCTGCCGGTCTTGCTGC
130 TCCCCC-CTGTGTGCTGTCGATCCTGCTGT
* * * ** * * * *
8179 CACAACCCTCGGT-TTGACTGGGGCTTAGGC-ATGGAATGAACTCCCTATGCCTAAGCTAACCCA
1 CGCAACCCTCGGTCTGGTCT-GATCTTAGACTA-GGAATGAACTTCGTATGCCTAAGCAAACCCA
* * ** * *
8242 CGAAACGGGCGTGTAGGCGCTCAGCCGATCGGAGAGGCAAAATGCGTAAGCCGGGGATCGACTCG
64 CGAAACGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGCAAAATGCGTAAGCCGGGGATCGACCCG
* * ** *
8307 GTCCCCCTTGCATGCTATCGATCCTGCTGT
129 ATCCCCCCTGTGTGCTGTCGATCCTGCTGT
* * * * * *
8337 CGCAACCTTTGATCCGGTCCGATCTTAGACT-GGGATGAAC-TCTGTATGC
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTTC-GTATGC
8386 TTAGACTGGG
Statistics
Matches: 287, Mismatches: 73, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 13 0.05
158 79 0.28
159 138 0.48
160 56 0.20
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (158 bp):
CGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCAAACCCACG
AAACGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGAT
CCCCCCTGTGTGCTGTCGATCCTGCTGT
Found at i:8394 original size:25 final size:26
Alignment explanation
Indices: 8360--8411 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8350 CCGGTCCGAT
8360 CTTAGACT-GGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
*
8385 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
8411 C
1 C
8412 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:8823 original size:171 final size:158
Alignment explanation
Indices: 8568--9081 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 158
8558 CCGACTGGGG
* * *
8568 CTTAGACAT-GGAATGAACTCCGTATCCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * *
8632 CCGGCTGAAGAGGTAGAATGCGCAAGCTGGGGATCGGCCAGATCCCCTCATACATGCTGTCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCAGATCCCC-C---CATG-TGT-G--C
* * * * *
8697 TTGCTGCTGGTCCTGCTGCCACAACCTTC-GATCCAGTCTGAT
122 -T-AT-C-GATCCTACTACCACAACCCTCAG-TCCAGTC-GAT
* *
8739 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * *
8804 CGGCCGGAGAGGCAGAATGCGCAAG-TCGGGGATTGGCCCGATCCCCCCCTGTGTGCTATCGATC
66 CGGCCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCAGATCCCCCCATGTGTGCTATCGATC
*
8868 CTACTACCGCAACCCTCAGTCCAGTCGAT
130 CTACTACCACAACCCTCAGTCCAGTCGAT
* * * ** *
8897 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTACGGGCATTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * ** * * ** *
8962 CGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCCA-GCGTGCTGCCGATGC
66 CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCAGATCCCCCCATGTGTGCTATCGATCC
** * * **
9026 TACTGTCGCAACCCTCGGTCTGGTCCGAT
131 TACTACCACAACCCTCAGTCCAGT-CGAT
* *
9055 CTAAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
9082 TTAGACTGAG
Statistics
Matches: 294, Mismatches: 44, Indels: 23
0.81 0.12 0.06
Matches are distributed among these distances:
157 30 0.10
158 129 0.44
159 23 0.08
160 2 0.01
161 1 0.00
162 1 0.00
163 1 0.00
165 1 0.00
166 3 0.01
167 3 0.01
170 3 0.01
171 97 0.33
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCAGATCCCCCCATGTGTGCTATCGATCC
TACTACCACAACCCTCAGTCCAGTCGAT
Found at i:9087 original size:26 final size:26
Alignment explanation
Indices: 9058--9107 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
9048 GTCCGATCTA
9058 AGACT-AGGAATGAACTCCGTATGCTT
1 AGACTGAGG-ATGAACTCCGTATGCTT
*
9084 AGACTGAGGATGAACTCTGTATGC
1 AGACTGAGGATGAACTCCGTATGC
9108 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGAGGATGAACTCCGTATGCTT
Found at i:9815 original size:26 final size:26
Alignment explanation
Indices: 9777--9829 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
9767 GGCTCAAAAT
9777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9803 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
9829 C
1 C
9830 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10165 original size:159 final size:157
Alignment explanation
Indices: 9802--10232 Score: 510
Period size: 159 Copynumber: 2.7 Consensus size: 157
9792 AACTCCGTAT
* * *
9802 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCCCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
9867 CCGACCGGAGAGGCAGAACACGCAAGCTGGGGATTGACCTAGTCCCCCCTGTGTGTTGTCGATCC
66 CCGACCGGAGAGGCAGAATATGCAAGCTGGGGATAG-CCTAGTCCCCCCTGTATGATGTCGATCC
* *
9932 TGCTGCCACAACCCTTGATCCAGTCTGA
130 CGCTGCCACAACCCTCGATCCAGTCTGA
* * * * *
9960 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
10024 GCCGACCGGAGAGGCATAATGTGCAAGCTGGGGATCAGCCTGGTCCCCCTCT-TCATGATG-CAG
65 GCCGACCGGAGAGGCAGAATATGCAAGCTGGGGAT-AGCCTAGTCCCCC-CTGT-ATGATGTC-G
* *
10087 GTCCCGCTGCCACAACCCTCGATCCAG-CTGGG
126 ATCCCGCTGCCACAACCCTCGATCCAGTCT-GA
* * *
10119 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
10184 CCGGTCGGAGAGGCAGAATTTGCAAGCCGGGGATTAGCCCAGTCCCCCC
66 CCGACCGGAGAGGCAGAATATGCAAGCTGGGGA-TAGCCTAGTCCCCCC
10233 CAACGTGCTA
Statistics
Matches: 230, Mismatches: 35, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
157 1 0.00
158 100 0.43
159 127 0.55
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATATGCAAGCTGGGGATAGCCTAGTCCCCCCTGTATGATGTCGATCCC
GCTGCCACAACCCTCGATCCAGTCTGA
Found at i:10305 original size:159 final size:158
Alignment explanation
Indices: 9803--10297 Score: 500
Period size: 159 Copynumber: 3.1 Consensus size: 158
9793 ACTCCGTATG
* * *
9803 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCCCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
9868 CGACCGGAGAGGCAGAACACGCAAGCTGGGGATT-GACCTAGT-CCCCCCTGTGTGTTGTCGATC
66 CGACCGGAGAGGCAGAATATGCAAGCTGGGGATTAG-CCTAGTCCCCCCCTACGTG-TATCGATC
* *
9931 CTGCTGCCACAACCCTTGATCCAGTCTGAT
129 CTGCTGCCACAACCCTCGATCCAGTCCGAT
* * * *
9961 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
10025 CCGACCGGAGAGGCATAATGTGCAAGCTGGGGATCAGCCTGGTCCCCCTCTTCATG-ATGCAGGT
65 CCGACCGGAGAGGCAGAATATGCAAGCTGGGGATTAGCCTAGTCCCCCCCTACGTGTAT-C-GAT
* * **
10089 CCCGCTGCCACAACCCTCGATCCAG-CTGGGG
128 CCTGCTGCCACAACCCTCGATCCAGTC-CGAT
* * *
10120 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * *
10185 CGGTCGGAGAGGCAGAATTTGCAAGCCGGGGATTAGCCCAGTCCCCCCCAACGTGCTATCGATCT
66 CGACCGGAGAGGCAGAATATGCAAGCTGGGGATTAGCCTAGTCCCCCCCTACGTG-TATCGATCC
* * * *
10250 TGCTGTCGCAACTCTC-AGTCTAGTCCGAT
130 TGCTGCCACAACCCTCGA-TCCAGTCCGAT
10279 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
10298 TTGTATGCTT
Statistics
Matches: 272, Mismatches: 53, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 94 0.35
159 171 0.63
160 3 0.01
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATATGCAAGCTGGGGATTAGCCTAGTCCCCCCCTACGTGTATCGATCCT
GCTGCCACAACCCTCGATCCAGTCCGAT
Found at i:10315 original size:26 final size:26
Alignment explanation
Indices: 10279--10334 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
10269 CTAGTCCGAT
**
10279 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10305 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10331 CTTA
1 CTTA
10335 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11551 original size:159 final size:157
Alignment explanation
Indices: 11260--11822 Score: 532
Period size: 159 Copynumber: 3.6 Consensus size: 157
11250 CGGGCGCTGA
* * * * *
11260 GAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGTCGAAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGA
** * * **
11325 GGCAGAATGCACAAGTCGGGGGCCGACCCAGTCCCCCCACGCATGCTGTTGATCCTACTGCTGCA
66 GGCAGAATGCACAAGTCGGGATCAG-CCCAGTCCCCCC-TGCATGCTGTTGATCCTACTGCCACA
11390 ACCCTCGGTCCGGTCTGATCTTAGACTGG
129 ACCCTCGGTCCGGTCTGATCTTAGACTGG
* * * *
11419 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCAGGCGCTGAGCCAGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGA
* ** * **
11484 GGCATAATGGGCAAGTCAGGGATCAGCCCAGTCCCCCTCTGCATGCTGCCTG-TCCCGCTGCCAC
66 GGCAGAATGCACAAGTC-GGGATCAGCCCAGTCCCCC-CTGCATGCTG-TTGATCCTACTGCCAC
* **
11548 AACCCTCGGTCC-GACTGGGGCTTAGACAT-G
128 AACCCTCGGTCCGGTCT-GATCTTAGAC-TGG
* * * * *
11578 GAATGAACTCCCTATGCCTAA-TCCAACCCACGAAATG-GCGTGCGGGCACTCAGCCGGCCAGAG
1 GAATGAACTCCGTATGCCTAAGT-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
* * * * *
11641 -GGTAGATTGCACAAG-CTGAGGATCGGCCC-GAT-CCCCCTGCATCCTGTTGATCCTACTGTCA
65 AGGCAGAATGCACAAGTC-G-GGATCAGCCCAG-TCCCCCCTGCATGCTGTTGATCCTACTGCCA
*
11702 CAACCCTCGGTCTGGTCTGATCTTAGACTGG
127 CAACCCTCGGTCCGGTCTGATCTTAGACTGG
* * * * ** ** *
11733 GAATGAACTTCGTATGCCTAAGTCAACCCACAAAACAAGCGTACGATCGCTCAGCCGACCAGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGA
* * *
11798 GGCAGGATGCGCAAGCCGGGGATCA
66 GGCAGAATGCACAAGTC-GGGATCA
11823 AACAGGTGGT
Statistics
Matches: 324, Mismatches: 65, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
154 3 0.01
155 68 0.21
156 32 0.10
157 36 0.11
158 25 0.08
159 151 0.47
160 9 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGA
GGCAGAATGCACAAGTCGGGATCAGCCCAGTCCCCCCTGCATGCTGTTGATCCTACTGCCACAAC
CCTCGGTCCGGTCTGATCTTAGACTGG
Found at i:12456 original size:26 final size:26
Alignment explanation
Indices: 12417--12470 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
12407 TGGCTGAAAC
12417 GCTTAGACTAGGAATGAACTTCGTAT
1 GCTTAGACTAGGAATGAACTTCGTAT
12443 GCTTAGAC-ATGGAATGAACTTCGTAT
1 GCTTAGACTA-GGAATGAACTTCGTAT
12469 GC
1 GC
12471 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTTCGTAT
Found at i:12955 original size:159 final size:159
Alignment explanation
Indices: 12664--13018 Score: 378
Period size: 159 Copynumber: 2.2 Consensus size: 159
12654 CGGGCGCTGA
* * * * *
12664 GAATGAACTACGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACCAGTCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCAGGCGCTCAACCAGTCGAAGA
* * * * * **
12729 GACAGAATATGCAAGTCGGGGGCTGACCCAGTCCCCCCACGCATGCTGTTGATCCTACTGCTGCA
66 GACAGAATACGCAAGTCGGGAGCAGACCCAGTCCCCCCACGCATGCTGCTGATCCCACTGCCACA
* *
12794 ACCCTCGGTCCGATCT-GATCTTAGAC-TGG
131 ACCCTCGGTCCG-GCTGGAGCTTAGACAT-G
* * * *
12823 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCAGGCGCTGAGCCAGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCAGGCGCTCAACCAGTCGAAGA
* * * * * *
12888 GGCATAATGCGCAAGTCGAGGATCAG-CCCAGTCCCCCTC-TGCATGCTGCCTG-TCCCGCTGCC
66 GACAGAATACGCAAGTCG-GGAGCAGACCCAGTCCCCC-CACGCATGCTG-CTGATCCCACTGCC
* *
12950 ACAACCCTCGGTCTGGCTGGGGCTTAGACATG
128 ACAACCCTCGGTCCGGCTGGAGCTTAGACATG
* *
12982 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
13019 GGCGTGCGGG
Statistics
Matches: 162, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
158 2 0.01
159 152 0.94
160 8 0.05
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCAGGCGCTCAACCAGTCGAAGA
GACAGAATACGCAAGTCGGGAGCAGACCCAGTCCCCCCACGCATGCTGCTGATCCCACTGCCACA
ACCCTCGGTCCGGCTGGAGCTTAGACATG
Found at i:13159 original size:26 final size:26
Alignment explanation
Indices: 13130--13182 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13120 CCAGTCTGAT
13130 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
13156 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
13182 C
1 C
13183 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:13885 original size:26 final size:26
Alignment explanation
Indices: 13846--13899 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
13836 TGGCTGAAAC
13846 GCTTAGACTAGGAATGAACTTCGTAT
1 GCTTAGACTAGGAATGAACTTCGTAT
*
13872 GCTTAGAC-ATGGAATGAACTTTGTAT
1 GCTTAGACTA-GGAATGAACTTCGTAT
13898 GC
1 GC
13900 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTTCGTAT
Found at i:14231 original size:26 final size:26
Alignment explanation
Indices: 14190--14242 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14180 CCAGCCCAAT
*
14190 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14216 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14242 C
1 C
14243 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15278 original size:26 final size:26
Alignment explanation
Indices: 15226--15278 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15216 GGCTCAAACT
* *
15226 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACGAATG
15252 CTTAGAC-ATGGAATGAACTACGAATG
1 CTTAGACTA-GGAATGAACTACGAATG
15278 C
1 C
15279 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGAATG
Found at i:15604 original size:26 final size:26
Alignment explanation
Indices: 15568--15620 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15558 CTAGTTTGAT
*
15568 CTTACACTAGGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
15594 CTTAGACTAGGGATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
15620 C
1 C
15621 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:15792 original size:26 final size:26
Alignment explanation
Indices: 15763--15815 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15753 CTGGTCTGAT
15763 CTTAGAC-TAGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
15789 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
15815 C
1 C
15816 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:16135 original size:159 final size:159
Alignment explanation
Indices: 15867--16283 Score: 389
Period size: 159 Copynumber: 2.6 Consensus size: 159
15857 TCGGAGACGT
* * * * *
15867 AGAATGCACAAGCCGGGGACCGACTCGGT-CCCCT-TACGTGCTGTCGATCCTACTGCCACAACC
1 AGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCTGTCGATCCTACTGCCACAACC
* * * * * * *
15930 CTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATCCCTAAATCAACCCATGAAACCAG
66 CTCGGTCCGGTCTGAGCTTAGACTAGGAATAAACTCCCTATCCCTAAACCAACCCACGAAA-CAG
* * *
15995 -CGTTCGGGCGCTGAGCCGGCCGAAGAGGC
130 ACGTGCGGCCGCTAAGCCGGCCGAAGAGGC
* * *
16024 ATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTCCATGCTGTCGGCTCC-ACTGCCACAAC
1 AGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCTGTC-GATCCTACTGCCACAAC
* * *
16088 CCTCGGTCCGGT-TGGGGCTTAGAC-ATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAAC
65 CCTCGGTCCGGTCT-GAGCTTAGACTA-GGAATAAACTCCCTATCCCTAAACCAACCCACGAAAC
* * * * *
16151 GGACGTGCGGCCGGTAAGTCGGTCGGAGAGGC
128 AGACGTGCGGCCGCTAAGCCGGCCGAAGAGGC
* * * * ** * * *
16183 AGAATGTGCAAGCCAGGGATTGGCCCGGTCCCCC-CTGCATGCTACCGATCCTGCTGTCGCAACC
1 AGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCTGTCGATCCTACTGCCACAACC
* * * * *
16247 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
66 CTCGGTCCGGTCTGAGCTTAGACTAGGAATAAACTCC
16284 GTATGCTTAG
Statistics
Matches: 208, Mismatches: 43, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
157 28 0.13
158 56 0.27
159 120 0.58
160 4 0.02
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.19
Consensus pattern (159 bp):
AGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCTGTCGATCCTACTGCCACAACC
CTCGGTCCGGTCTGAGCTTAGACTAGGAATAAACTCCCTATCCCTAAACCAACCCACGAAACAGA
CGTGCGGCCGCTAAGCCGGCCGAAGAGGC
Found at i:16292 original size:26 final size:26
Alignment explanation
Indices: 16263--16315 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16253 CTGGTCCGAT
16263 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16289 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16315 C
1 C
16316 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16665 original size:158 final size:156
Alignment explanation
Indices: 16358--16897 Score: 575
Period size: 159 Copynumber: 3.4 Consensus size: 156
16348 GCTGATCCCA
* * * * * * ** *
16358 CTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTGGGCCTTACACATGGAATGAACTCCGTATG
1 CTGTCGATCCTACTGCCACAACCCTCGGTCCGGATCGATCTTAGAC-TGGAATGAACTCCGTATG
* * * *
16423 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCTGAAGAGGTAGAATGCGCAAGC
65 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC-GGAGAGGCATAATGCGCAAGC
*
16488 CAGGGA-CCACCCTGGTCCCCCCTACGTG
129 CAGGGATCGACCC-GGTCCCCCCTACGTG
* * ** * *
16516 CTATCGATCCTGCTATCACAACCCTCGGTCCGGTTCGATCTTAGACTCGAAATGAACTCCGTATG
1 CTGTCGATCCTACTGCCACAACCCTCGGTCCGGATCGATCTTAGACT-GGAATGAACTCCGTATG
* * *
16581 CCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGC
65 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-CGGAGAGGCATAATGCGCAAGC
** * * ***
16646 TGGGGATCGACCCGATCCCCCTCTGCAAC
129 CAGGGATCGACCCGGTCCCCC-CTACGTG
* * * * ** *
16675 CTGTCGGTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGTCGATCCTACTGCCACAACCCTCGGTCCGGATCGATCTTAGAC-TGGAATGAACTCCGTATG
*
16740 CCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGC
65 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-CGGAGAGGCATAATGCGCAAGC
*
16805 CAGGGATCGGCCCGGT-CCCCC-AGCGTG
129 CAGGGATCGACCCGGTCCCCCCTA-CGTG
* * *
16832 CTGTCGATCCTACTGCCGCAACCCTCGGT-CTGATCTGATCTTAGACTGGGAATGAACTCCATAT
1 CTGTCGATCCTACTGCCACAACCCTCGGTCCGGATC-GATCTTAGACT-GGAATGAACTCCGTAT
16896 GC
64 GC
16898 TTAGACTGGG
Statistics
Matches: 315, Mismatches: 59, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
156 4 0.01
157 54 0.17
158 124 0.39
159 132 0.42
160 1 0.00
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.18
Consensus pattern (156 bp):
CTGTCGATCCTACTGCCACAACCCTCGGTCCGGATCGATCTTAGACTGGAATGAACTCCGTATGC
CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCGGAGAGGCATAATGCGCAAGCCA
GGGATCGACCCGGTCCCCCCTACGTG
Found at i:16751 original size:159 final size:157
Alignment explanation
Indices: 16358--16825 Score: 580
Period size: 159 Copynumber: 3.0 Consensus size: 157
16348 GCTGATCCCA
* *
16358 CTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTGGGCCTTACACATGGAATGAACTCCGTATG
1 CTGTCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGCCTTAGACATGGAATGAACTCCGTATG
* * * *
16423 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCTGAAGAGGTAGAATGCGCAAGC
66 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC-GGAGAGGCATAATGCGCAAGC
* ***
16488 CAGGGA-CCACCCTGGTCCCCCCTACGTG
130 CAGGGATCGACCC-GGTCCCCCCTACAAC
* * * * * ** *
16516 CTATCGATCCTGCTATCACAACCCTCGGTCCGGTTCGATCTTAGAC-TCGAAATGAACTCCGTAT
1 CTGTCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGCCTTAGACAT-GGAATGAACTCCGTAT
* * *
16580 GCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAGCCGGTCGGAGAGGCATAATGCGCAAG
65 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-CGGAGAGGCATAATGCGCAAG
** * *
16645 CTGGGGATCGACCCGATCCCCCTCTGCAAC
129 CCAGGGATCGACCCGGTCCCCC-CTACAAC
** * * *
16675 CTGTCGGTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGTCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGCCTTAGACATGGAATGAACTCCGTATG
*
16740 CCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGC
66 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-CGGAGAGGCATAATGCGCAAGC
*
16805 CAGGGATCGGCCCGGTCCCCC
130 CAGGGATCGACCCGGTCCCCC
16826 AGCGTGCTGT
Statistics
Matches: 259, Mismatches: 46, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
157 1 0.00
158 120 0.46
159 137 0.53
160 1 0.00
ACGTcount: A:0.22, C:0.34, G:0.28, T:0.16
Consensus pattern (157 bp):
CTGTCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGCCTTAGACATGGAATGAACTCCGTATG
CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCGGAGAGGCATAATGCGCAAGCC
AGGGATCGACCCGGTCCCCCCTACAAC
Found at i:16907 original size:26 final size:26
Alignment explanation
Indices: 16871--16923 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16861 CTGATCTGAT
16871 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16897 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16923 C
1 C
16924 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17977 original size:26 final size:26
Alignment explanation
Indices: 17936--17988 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17926 CCGATCCGAT
17936 CTTAGACTGGGAATGAACTACATATG
1 CTTAGACTGGGAATGAACTACATATG
*
17962 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTACATATG
17988 C
1 C
17989 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:19030 original size:26 final size:26
Alignment explanation
Indices: 19001--19053 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18991 CCGGTTGGAT
19001 CTTAGACT-GGGACTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
19027 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
19053 C
1 C
19054 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:20758 original size:157 final size:160
Alignment explanation
Indices: 20404--20820 Score: 414
Period size: 157 Copynumber: 2.6 Consensus size: 160
20394 TGGCTCAAAC
* * *
20404 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 TCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * ** *
20469 CCAACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAATCCCCCTCTGTGTGCTGTCGGTC
66 CCAACCGGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCTCTGTGTGCTACCGATC
* * * * ** *
20534 CCGCTGCCACAACCCTCGGTCTGGCTGGGG
131 CCACTACCACAACCCTCGGTCTCGATCCGA
* * * * *
20564 T-TTAGACAT-TGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-AGGTGTGCTGGCGCTC
1 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGA-GCGTGCGGGCGCTC
* *** * * **
20626 AGTCGGTCGGAAAGGCAGAATGCGCAAGTCGGGGATCGGCCTGAT-CCCC-CTGTGTGCTACCGA
64 AGCCAACCGGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCTCTGTGTGCTACCGA
* *
20689 TCCTACTACCGCAACCCTCGGTC-CGATCCGA
129 TCCCACTACCACAACCCTCGGTCTCGATCCGA
* ** * *
20720 TCTTAGACTGGGAATGAACTCCATATGCCTGAGTCAACCCATGAAACGAGCATGCGGACGCTCAG
1 TCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * *
20785 CCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCG
66 CCAACCGGAAAGGCAGAATGCGCAAGCCGAGGATCG
20821 AACGGGTGGT
Statistics
Matches: 206, Mismatches: 46, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
156 5 0.02
157 108 0.52
158 6 0.03
159 85 0.41
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (160 bp):
TCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCAACCGGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCTCTGTGTGCTACCGATC
CCACTACCACAACCCTCGGTCTCGATCCGA
Found at i:21456 original size:26 final size:26
Alignment explanation
Indices: 21419--21471 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21409 GGCTCAAAAT
*
21419 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
21445 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21471 C
1 C
21472 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21814 original size:26 final size:26
Alignment explanation
Indices: 21774--21825 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21764 GTGGTCCGAT
*
21774 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGTAATGAACACTGTATG
21800 CTTAGACATGG-AATGAACACTGTATG
1 CTTAGAC-TGGTAATGAACACTGTATG
21826 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACACTGTATG
Found at i:21940 original size:184 final size:183
Alignment explanation
Indices: 21616--21984 Score: 447
Period size: 184 Copynumber: 2.0 Consensus size: 183
21606 TTCGGCTGGG
* * *
21616 GCTTAGACATGGAATGAACTCCATATGCCTAGCCAACCCAAGAAACGAGCTGCGGGTGCTCAACC
1 GCTTAGACATGGAATGAACACCATATGCCTAGCCAACCCAAGAAACGAGCTGCAGGCGCTCAACC
* * * * * * **
21681 AGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCCTGTGTGTTGTCAATCTT
66 AGCCGAAGAAGCAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCCCCTGTGTGCTATCAATCCG
* *
21746 GCTACCGTAACCCGCGGTGT-GGTCCGATCTTAGACTGGTAATGAACTCTGTAT
131 GCTACCGTAACCCGCGGT-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
** * * * *
21799 GCTTAGACATGGAATGAACACTGTATGTCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAG
1 GCTTAGACATGGAATGAACACCATATGCCT-AGCCAACCCAAGAAACGAGC-TGCAGGCGCTCAA
* * * *
21864 CC-GACCGAAGAAGTAGAATGCGCAAGCCGGGGTTCGGCCTGAT-CCCCCCTGTGTGCTATCGAT
64 CCAG-CCGAAGAAGCAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCCCCTGTGTGCTATCAAT
* * *
21927 CCGGCTGCCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
128 CCGGCTACCGTAACCCGCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
21983 GC
1 GC
21985 CTAAGTCAAC
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
183 27 0.17
184 86 0.55
185 43 0.28
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACACCATATGCCTAGCCAACCCAAGAAACGAGCTGCAGGCGCTCAACC
AGCCGAAGAAGCAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCCCCTGTGTGCTATCAATCCG
GCTACCGTAACCCGCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:22227 original size:159 final size:158
Alignment explanation
Indices: 21799--22264 Score: 433
Period size: 159 Copynumber: 2.9 Consensus size: 158
21789 AACTCTGTAT
* * *
21799 GCTTAGACATGGAATGAACACTGTATGTCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAG
* * * **
21864 CCGACCGAAGAA-GTAGAATGCGCAAGCCG-GGGTTCGGCCTGATCCCCCCTGTGTGCTATCGAT
66 CCGACCGAA-AAGGCAGAATGCGCAAGCCGAGGATTCGTCC-GATCCCCCCTGCATGCTATCGAT
* * ** * *
21927 CCGGCTGCCGTAACCCTCGGTTCGGTCTGA
129 CCCGCTACCACAACCCTCGGTTCCGACTGA
* * * * * *
21957 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCA
* * * * * * * *
22021 GCTGGCCGGAGAGGCATAATACGCAAGCC-AGGGA-TCGGTCCGATCCCCTTCTGCATGCTGTC-
65 GCCGACCGAAAAGGCAGAATGCGCAAGCCGA-GGATTC-GTCCGATCCCC-CCTGCATGCTATCG
*
22083 AGTCCCGCTACCACAACCCTCGG-TCCGACTGGG
127 A-TCCCGCTACCACAACCCTCGGTTCCGACT-GA
* * * *
22116 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAG
* * * * *
22181 CCAACCGAAAAGGCAGAATGCGCGAGCCGAGGATTCGTCCGATCCCCCCTACGTGCTGTCGATCC
66 CCGACCGAAAAGGCAGAATGCGCAAGCCGAGGATTCGTCCGATCCCCCCTGCATGCTATCGATCC
* ** *
22246 TGCTGTCGCAACCCTCGGT
131 CGCTACCACAACCCTCGGT
22265 CTGGTCTGAT
Statistics
Matches: 241, Mismatches: 54, Indels: 25
0.75 0.17 0.08
Matches are distributed among these distances:
157 2 0.01
158 115 0.48
159 120 0.50
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAG
CCGACCGAAAAGGCAGAATGCGCAAGCCGAGGATTCGTCCGATCCCCCCTGCATGCTATCGATCC
CGCTACCACAACCCTCGGTTCCGACTGA
Found at i:22301 original size:158 final size:158
Alignment explanation
Indices: 21800--22294 Score: 486
Period size: 158 Copynumber: 3.1 Consensus size: 158
21790 ACTCTGTATG
* * *
21800 CTTAGACATGGAATGAACACTGTATGTCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAGC
* * * * *
21865 CGACCGAAGAA-GTAGAATGCGCAAGCCG-GGGTTCGGCCTGATCCCCCCTGTGTGCTATCGATC
66 CGACCGAA-AAGGCAGAATGCGCAAGCCGAGGATTCGTCC-GATCCCCCCTGCGTGCTGTCGATC
* *
21928 CGGCTGCCGTAACCCTCGGT-TCGGTCTGAT
129 CCGCTGCCGCAACCCTCGGTCT-GGTCTGAT
* * * * *
21958 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAG
* * * * * * * *
22022 CTGGCCGGAGAGGCATAATACGCAAGCC-AGGGA-TCGGTCCGATCCCCTTCTGCATGCTGTC-A
65 CCGACCGAAAAGGCAGAATGCGCAAGCCGA-GGATTC-GTCCGATCCCC-CCTGCGTGCTGTCGA
* * * * **
22084 GTCCCGCTACCACAACCCTCGGTC-CGACTGGGG
127 -TCCCGCTGCCGCAACCCTCGGTCTGGTCT-GAT
* * * *
22117 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAGC
* * * *
22182 CAACCGAAAAGGCAGAATGCGCGAGCCGAGGATTCGTCCGATCCCCCCTACGTGCTGTCGATCCT
66 CGACCGAAAAGGCAGAATGCGCAAGCCGAGGATTCGTCCGATCCCCCCTGCGTGCTGTCGATCCC
*
22247 GCTGTCGCAACCCTCGGTCTGGTCTGAT
131 GCTGCCGCAACCCTCGGTCTGGTCTGAT
*
22275 CTTAGAC-TAGGATTGAACTC
1 CTTAGACAT-GGAATGAACTC
22295 TATATGCTTA
Statistics
Matches: 264, Mismatches: 58, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
157 3 0.01
158 133 0.50
159 124 0.47
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAGC
CGACCGAAAAGGCAGAATGCGCAAGCCGAGGATTCGTCCGATCCCCCCTGCGTGCTGTCGATCCC
GCTGCCGCAACCCTCGGTCTGGTCTGAT
Found at i:23033 original size:26 final size:26
Alignment explanation
Indices: 22996--23048 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22986 GGCTCAAAAT
*
22996 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
23022 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
23048 C
1 C
23049 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:23539 original size:184 final size:184
Alignment explanation
Indices: 23193--23562 Score: 453
Period size: 184 Copynumber: 2.0 Consensus size: 184
23183 TTCGGCTGGG
* * *
23193 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCTGCGGGTGCTCAAC
1 GCTTAGACATGGAATGAACACCATATGCCTAAGCCAACCCAAGAAACGAGCTGCAGGCGCTCAAC
* * * * *
23258 CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTGGTCCCGCCCTGCGTGTTGTCAATCC
66 CGATCGAAGAGGCAGAATACGCAAGCCGAGGATTGGCCTGATCCCGCCCTGCGTGCTATCAATCC
* * * *
23323 TGCTGCCGTAACCCGTGGTGTGGTCCGATCTTAGATTGGGAATGAACTCTGTAT
131 GGCTGCCATAACCCGTGGTGTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
** * * *
23377 GCTTAGACATGGAATGAACACTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGTTCAG
1 GCTTAGACATGGAATGAACACCATATGCCTAAGCCAACCCAAGAAACGAGC-TGCAGGCGCTCAA
* * * *
23442 CCGA-CTGAAGAGGCAGAATACGCAAGCC-AGGGTTCGGCTTGATCCC-CCCTGTGTGCTATCGA
65 CCGATC-GAAGAGGCAGAATACGCAAGCCGAGGATT-GGCCTGATCCCGCCCTGCGTGCTATCAA
**
23504 TCCGGCTGCCATAACCC-TCGGT-TCGGTTTGATCTTAGACTGGGAATGAACTCCGTAT
128 TCCGGCTGCCATAACCCGT-GGTGT-GGTCCGATCTTAGACTGGGAATGAACTCCGTAT
23561 GC
1 GC
23563 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
183 2 0.01
184 114 0.72
185 42 0.27
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACACCATATGCCTAAGCCAACCCAAGAAACGAGCTGCAGGCGCTCAAC
CGATCGAAGAGGCAGAATACGCAAGCCGAGGATTGGCCTGATCCCGCCCTGCGTGCTATCAATCC
GGCTGCCATAACCCGTGGTGTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:23733 original size:159 final size:156
Alignment explanation
Indices: 23377--23877 Score: 465
Period size: 159 Copynumber: 3.2 Consensus size: 156
23367 AACTCTGTAT
* * * *
23377 GCTTAGACATGGAATGAACACTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGTT-AG
* * * * ** *
23442 CCGACTGAAGAGGCAGAATACGCAAGCCAGGGTTCGGCTT-GATCCCCCCTGTGTGCTATCGATC
65 CCGGCCGGAGAGGCAGAATACGCAAGCCAGGGATCGG-TTCGAT-CCCCCTGCATGCTGTCGATC
* * * * ** *
23506 CGGCTGCCATAACCCTCGGTTCGGTTTGA
128 CCGCTACCACAACCCTCGGTCCGACTGGA
* * * *
23535 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGTT-A
* * *
23599 GCTGGCCGGAGAGGCATAATACGCAAGCCAGGGATCGGTTCGATCCCCTTCTGCATGCTGTCGGT
64 GCCGGCCGGAGAGGCAGAATACGCAAGCCAGGGATCGGTTCGATCCCC--CTGCATGCTGTCGAT
* *
23664 CCCGTTACCACAACCCTCGGTCCGACTGGG
127 CCCGCTACCACAACCCTCGGTCCGACTGGA
* * * *
23694 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGC-GTTAG
* * * * *
23759 CCGGCCAGAAAGGCAGAATGCGCAAGCC-GAGGATCGG-CCGATCCCCCTGCATGCTGTCGATCT
65 CCGGCCGGAGAGGCAGAATACGCAAGCCAG-GGATCGGTTCGATCCCCCTGCATGCTGTCGATCC
* * * * * *
23822 TGCTGCCGCAACCCTCGATCCTGTC-CGA
129 CGCTACCACAACCCTCGGTCC-GACTGGA
* *
23850 TCTTAGAC-TAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
23878 TTCGACTGGG
Statistics
Matches: 280, Mismatches: 54, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
155 1 0.00
156 56 0.20
157 9 0.03
158 97 0.35
159 114 0.41
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGTTAGC
CGGCCGGAGAGGCAGAATACGCAAGCCAGGGATCGGTTCGATCCCCCTGCATGCTGTCGATCCCG
CTACCACAACCCTCGGTCCGACTGGA
Found at i:30395 original size:26 final size:26
Alignment explanation
Indices: 30366--30418 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30356 TCGATCTGAT
*
30366 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
30392 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
30418 C
1 C
30419 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:31123 original size:26 final size:26
Alignment explanation
Indices: 31085--31135 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
31075 GGCACAAAAT
*
31085 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31111 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
31136 TCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31503 original size:158 final size:159
Alignment explanation
Indices: 31113--31523 Score: 445
Period size: 158 Copynumber: 2.6 Consensus size: 159
31103 TTCGTATGCT
* *
31113 TAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAGCCG
** * * * * * *
31178 GTTAGAGAGGCAGAATGCGTAAG-CGGGGATTGGCCCGATCCTCCCCTGCTTGCTGTCGATCCTG
66 GTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCTCCCCGGCATGCTGCCGATCCTG
* * *
31242 CTGCCACAACCCTCGGTCCAGTCCGATCT
131 CTGCCACAACCCTCGGTCCACTCCGAGCG
* * * * *
31271 TAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAGCC
* * * * * * * *
31335 GATCGAAGAGGCATAGTGCGCAAGCCGGGGATCGGCCTGGTCC-CCTCGGCATGCTGCCGGT-CT
65 GGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCTCCCCGGCATGCTGCCGATCCT
* *
31398 CGCTGCCACAACCCTCGGTCCGACT-GGGGCG
130 -GCTGCCACAACCCTCGGTCC-ACTCCGAGCG
* * * *
31429 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAGCCG
* * *
31494 GCCGGAGAGGCAAAACGCGCAAGCTGGGGA
66 GTCGGAGAGGCAAAATGCGCAAGCCGGGGA
31524 CCGACCCAGT
Statistics
Matches: 206, Mismatches: 42, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 185 0.90
159 18 0.09
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (159 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAGCCG
GTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCTCCCCGGCATGCTGCCGATCCTG
CTGCCACAACCCTCGGTCCACTCCGAGCG
Found at i:32780 original size:26 final size:26
Alignment explanation
Indices: 32744--32796 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32734 CTGATCTGAT
*
32744 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32770 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32796 C
1 C
32797 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34698 original size:26 final size:25
Alignment explanation
Indices: 34658--34709 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
34648 CCGGTCTAAT
*
34658 CTTAGATGGGAATGAACTCTGTATG
1 CTTAGATGGGAATGAACTCCGTATG
*
34683 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGA-TGGGAATGAACTCCGTATG
34709 C
1 C
34710 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (25 bp):
CTTAGATGGGAATGAACTCCGTATG
Found at i:36148 original size:158 final size:158
Alignment explanation
Indices: 35800--36184 Score: 433
Period size: 158 Copynumber: 2.4 Consensus size: 158
35790 AACTCTGTAT
* * *
35800 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCGCTCAG
** * * *
35865 CCGGTCGGAGAGGTAGAATGCACAAGTCAGAGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTT
66 CCGAACGGAGAGATAGAATGCACAAGCCAGAGATCGGCCCGGTCCCCCTCTACGTGCTGCCGATT
* *
35930 TAACTGCCACAACCCTCGGTCCGGCTGGG
131 T-ACTGCCACAACCCTCGGTCCGGCTCGA
* * * * *
35959 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCCCAAAACGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * *
36024 CC-AACTGA-AGATACAGAATGCGCAAGCCAGTGATCGGCCTGGTCCCCC-CTGCGTGCTGCCGA
66 CCGAACGGAGAGAT--AGAATGCACAAGCCAGAGATCGGCCCGGTCCCCCTCTACGTGCTGCCGA
* *
36086 TCCTT-CTGTCGCAACCCTCGGTCCGG-TCCGA
129 T--TTACTGCCACAACCCTCGGTCCGGCT-CGA
* *
36117 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAACGAGCGTGCGGGCGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCATGCGGGCGCTC
36180 AGCCG
64 AGCCG
36185 GCCAGAGAGG
Statistics
Matches: 189, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
157 6 0.03
158 92 0.49
159 89 0.47
160 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGAACGGAGAGATAGAATGCACAAGCCAGAGATCGGCCCGGTCCCCCTCTACGTGCTGCCGATT
TACTGCCACAACCCTCGGTCCGGCTCGA
Found at i:36980 original size:26 final size:26
Alignment explanation
Indices: 36951--37003 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36941 TTGGTCCGAT
36951 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACTTGGG-ATGAACTCCGTATG
36977 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTTGGGATGAACTCCGTATG
37003 C
1 C
37004 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTCCGTATG
Found at i:37498 original size:26 final size:26
Alignment explanation
Indices: 37457--37512 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
37447 CTAGTTAGAT
37457 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
37483 CTTAGACTGGGGATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
37509 CTTA
1 CTTA
37513 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:38217 original size:26 final size:26
Alignment explanation
Indices: 38180--38230 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
38170 GCTCAAACTC
38180 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
38206 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
38231 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:38563 original size:26 final size:26
Alignment explanation
Indices: 38522--38574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
38512 TTGGTTAGAT
38522 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
38548 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
38574 C
1 C
38575 CTAATCAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:39247 original size:26 final size:26
Alignment explanation
Indices: 39218--39270 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
39208 CTGGTCTGAT
*
39218 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
39244 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
39270 C
1 C
39271 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:39989 original size:26 final size:26
Alignment explanation
Indices: 39951--40003 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
39941 GGCTCAAACT
39951 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
39977 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
40003 C
1 C
40004 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:40323 original size:26 final size:26
Alignment explanation
Indices: 40294--40346 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
40284 CTGGTTCAAT
* *
40294 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
40320 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
40346 C
1 C
40347 CTAAGACAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:40353 original size:27 final size:26
Alignment explanation
Indices: 40297--40353 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
40287 GTTCAATCTT
* * *
40297 AGACTGGGAATGAATTCTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTA
*
40323 AGACTGGGGATGAACTCCGTATGCCTA
1 AGACTGGGAATGAACTCCGTATG-CTA
40350 AGAC
1 AGAC
40354 AACCCACGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTA
Found at i:40487 original size:184 final size:184
Alignment explanation
Indices: 40135--40504 Score: 430
Period size: 184 Copynumber: 2.0 Consensus size: 184
40125 TCCGGCTGGG
* * *
40135 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGAGCATACGGGCGCTCAG
* * * * * *
40200 TCGGCCGGTGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTGTGTGCTGCTGATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCTCGATCCCCCCTGCGTGCTGCTGATCC
* * ** * *
40265 TGGTATCGCAACCGTCAGTCTGGTTCAATCTTAGACTGGGAATGAATTCTGTAT
131 TGATATCGCAACCCTCAGTCCAGTTCAATCTGAGACTGGGAATGAACTCTGTAT
* * ** *
40319 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGTGTACGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGAGCATACGGGCGCTCA
*
40383 GCCAGCCGGAGAGGTAGAATGCGCAAGCCGGGGACC-GACTCGATCCCCCCTGCGTGCTG-TCGA
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCAG-CTCGATCCCCCCTGCGTGCTGCT-GA
*
40446 TCCT-AT-TGCTGCAACCCTC-GATCCAG-TCTGATCTGAGACTGGGAATGAACTCTGTAT
128 TCCTGATAT-C-GCAACCCTCAG-TCCAGTTC-AATCTGAGACTGGGAATGAACTCTGTAT
40503 GC
1 GC
40505 ATAAGTCAAC
Statistics
Matches: 157, Mismatches: 22, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
182 1 0.01
183 8 0.05
184 148 0.94
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGAGCATACGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCTCGATCCCCCCTGCGTGCTGCTGATCC
TGATATCGCAACCCTCAGTCCAGTTCAATCTGAGACTGGGAATGAACTCTGTAT
Found at i:40619 original size:158 final size:156
Alignment explanation
Indices: 40320--40826 Score: 502
Period size: 158 Copynumber: 3.2 Consensus size: 156
40310 ATTCTGTATG
* * *
40320 CTTAGACTGGGGATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGTGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATG-CTAAGACAACCCACGAAATGAGCGTACGGGTGCTCAGC
* * * * * * *
40385 CAGCCGGAGAGGTAGAATGCGCAAGCCGGGGACCGACTCGATCCCCCCTGCGTGCTGTCGATCCT
65 GA-CCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
* *
40450 ATTGCTGCAACCCTCGATCCAGTCT-GAT
129 ACTGCCGCAACCCTCGATCC-GTCTAGAT
* * * * * * *
40478 CTGAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTTCGGGCGCTGAAG
1 CTTAGACTGGGAATGAACTCCGTATGC-TAAGACAACCCACGAAATGAGCGTACGGGTGCT-CAG
* * * *
40543 CGATCGGAGAGGCATAATGCGAAAGCCGGGGATCGGCCCGATCCCCTCTGAGTGCTGCCGAT-CT
64 CGACCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
* * * **
40607 CACTGCCACAACCCTCGGTCCGACTAGGG
129 -ACTGCCGCAACCCTCGATCCGTCTAGAT
* * *
40636 CTTAGACAT-GGAATGAACTCAC-TATGTCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTC-CGTATG-CTAAGACAACCCACGAAATGAGCGTACGGGTGCTCA
* * ** *
40699 GTCGGCCGGAGAGGCAGAATGCGTAAGTTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
63 G-CGACCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
* * * * *
40764 CTGCTGTCGTAACCCTCGATTCGGT-TCGAT
127 CTACTGCCGCAACCCTCGA-TCCGTCTAGAT
*
40794 CTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 CTTAGACTGGGAATGAACTCCGTATGCTAAGAC
40827 TGGGGATGAA
Statistics
Matches: 280, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 15 0.05
158 254 0.91
159 11 0.04
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCTAAGACAACCCACGAAATGAGCGTACGGGTGCTCAGCG
ACCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTAC
TGCCGCAACCCTCGATCCGTCTAGAT
Found at i:40830 original size:26 final size:26
Alignment explanation
Indices: 40794--40846 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
40784 TCGGTTCGAT
40794 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
40820 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
40846 C
1 C
40847 CTACGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:41168 original size:170 final size:169
Alignment explanation
Indices: 40888--41319 Score: 560
Period size: 170 Copynumber: 2.5 Consensus size: 169
40878 GCTTAGCCAT
* * * *** * * * *
40888 CCGGAGAGGCATAATGCACAAGCCGGTGATCCAACCGGTCACCCTCTGCATGCTGTCGTTCCCGC
1 CCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTC-CCCCCTACGTGCTGTCGATCCCGC
* * *
40953 TGGCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGTTTAGACATGGAATGAACT-TCGTATG
65 T-GCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCT-GTATG
*
41017 CCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAATCGG
128 CCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGG
* * * *
41059 CCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTGCT
1 CCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCCGCT
*
41124 GCAGGTCTTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCC
66 GC-GGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCC
*
41189 TAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAACCGG
130 TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGG
* * * ** * *
41229 CTGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCTCTGCGTATTGTCGATCCGGTT
1 CCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCCGCT
*
41294 GTTGGTCCTGCTGCCACAACCCTCGG
66 G-CGGTCCTGCTGCCACAACCCTCGG
41320 CCTGGTCTGA
Statistics
Matches: 226, Mismatches: 32, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
169 2 0.01
170 192 0.85
171 32 0.14
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (169 bp):
CCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCCGCT
GCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCT
AAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGG
Found at i:41373 original size:26 final size:26
Alignment explanation
Indices: 41331--41383 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
41321 CTGGTCTGAT
*
41331 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
41357 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
41383 C
1 C
41384 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:41883 original size:26 final size:26
Alignment explanation
Indices: 41831--41883 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
41821 CTGATTCGAT
* *
41831 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
*
41857 CTTAGACTGGGGATGAACTCCGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
41883 C
1 C
41884 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:42069 original size:26 final size:26
Alignment explanation
Indices: 42040--42092 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
42030 CCGGTCTGAT
42040 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
42066 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
42092 C
1 C
42093 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:42254 original size:26 final size:26
Alignment explanation
Indices: 42225--42277 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
42215 CCGATCCGAT
*
42225 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
42251 CTTAGAATGGGGATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
42277 C
1 C
42278 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:42420 original size:394 final size:393
Alignment explanation
Indices: 41674--42426 Score: 924
Period size: 394 Copynumber: 1.9 Consensus size: 393
41664 CGGTTGAGGT
* * *
41674 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCT
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
* * *
41739 GGCTGGAGAGGCAGAATACGCAAGCCAGAGATCGGCCCGGTCCCTCCAGCGGGCTGCCGATCCTG
66 GGCTGGAGAGGCAGAATACGCAAGCCAGAGACCGGCCCGGTCCCCCCAGCAGGCTGCCGATCCTG
* * * * *
41804 CTACCATTACCCTTGGTCTGATTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGG
131 CTACCATAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGG
* * * * * *
41869 ATGAACTCCGGATGCCTAACTCAACCCACGAAATGAACGTATGGGTGCTCAGCCGGCCAGAGATG
196 ATGAACTCCGGATGCCTAACTCAACCCACGAAACGAACCTACGGGCGCTCAGCCGGCCAGAAAGG
* * * * *
41934 CCGGTCGGAGAGGTAGAATGCAGAAGTCGGGGATCAACCCGATCCCCCCTGTGTGCTACCGATCC
261 CCGGTCGAAGAGGCAGAATGCAGAAGTCCGGGATCAACCCGAGCCCCCCTGCGTGCTACCGATCC
* * **
41999 TATTGCAGGTCCTCCTACCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
326 CACTGCAGGTCCTCCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
42064 TGC
391 TGC
* * * *
42067 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGAGCGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
* * **
42132 GGCTGGAGAGGCAGAATGA-GCAAGCC-GAGGACCGGCTCCGGTCCCCCCTGCATGCTGTTGATC
66 GGCTGGAGAGGCAGAAT-ACGCAAGCCAGA-GACCGGC-CCGGTCCCCCCAGCAGGCTGCCGATC
** *
42195 CTGCTGTCGTAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATG
128 CTGCTACCATAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATG
* * * * * * *
42260 GGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCCTGCGGGCGCTCAGTCGGCCAGAA
193 GGGATGAACTCCGGATGCCTAACTCAACCCACGAAACGAACCTACGGGCGCTCAGCCGGCCAGAA
* ** *
42325 AGGCCGG-CTGAAGAGGCATAATGC-GCAAG-CCGGGATCAACTTG-GCCCCCCTCGGCGTGCTG
258 AGGCCGGTC-GAAGAGGCAGAATGCAG-AAGTCCGGGATCAACCCGAGCCCCCCT--GCGTGCTA
* * ** *
42386 TCGATCCCGCTGGTGGTCCTGCTACCACAACCCTCGATCCG
319 CCGATCCCACTGCAGGTCCTCCTACCACAACCCTCGATCCG
42427 ACTGGGGCTT
Statistics
Matches: 300, Mismatches: 53, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
392 9 0.03
393 101 0.34
394 190 0.63
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (393 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
GGCTGGAGAGGCAGAATACGCAAGCCAGAGACCGGCCCGGTCCCCCCAGCAGGCTGCCGATCCTG
CTACCATAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGG
ATGAACTCCGGATGCCTAACTCAACCCACGAAACGAACCTACGGGCGCTCAGCCGGCCAGAAAGG
CCGGTCGAAGAGGCAGAATGCAGAAGTCCGGGATCAACCCGAGCCCCCCTGCGTGCTACCGATCC
CACTGCAGGTCCTCCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
TGC
Found at i:42633 original size:26 final size:26
Alignment explanation
Indices: 42604--42656 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
42594 CCGATTTGAT
42604 CTTAGAC-TGAAAATGAACTCCGTATG
1 CTTAGACATG-AAATGAACTCCGTATG
*
42630 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
42656 C
1 C
42657 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCGTATG
Found at i:42863 original size:32 final size:32
Alignment explanation
Indices: 42802--42864 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
42792 GACTGGGAAT
* * * *
42802 GAACTCCGTATGCCTAAGTCAATCGACGAAAC
1 GAACTCCCTATGCCTAAGCCAACCCACGAAAC
42834 GAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GAACTCCCTATGCCTAAGCCAACCCACGAAA
42865 TGGGCGTGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.35, C:0.33, G:0.16, T:0.16
Consensus pattern (32 bp):
GAACTCCCTATGCCTAAGCCAACCCACGAAAC
Found at i:43438 original size:159 final size:158
Alignment explanation
Indices: 43161--43448 Score: 391
Period size: 159 Copynumber: 1.8 Consensus size: 158
43151 CCCTCGATCT
* * **
43161 GACTGGGGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAATGAGTGTGCGGG
1 GACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGG
* * *
43226 CACTCAACGGACCGGAGAGCCAGAATGCGCAAGCTGGGAATCGACCTGGTCCCCCTTTGCGTGCT
66 CACTCAACGGACCGGAGAGCCAGAATCCGCAAGCTGGGAATCGACCTGATCCCCC-CTGCGTGCT
43291 ACCGGTCTCGCTACCACAAACCTCAGCCC
130 ACCGGTCTCGCTACCACAAACCTCAGCCC
* *
43320 GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGG
1 GACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGG
* * * * * * *
43385 CGCTCAGCCGG-TCGGAGAGGCAGAATCCGTAAGCTGAGG-ATCGGCTTGATCCCCCCTGCGTGC
66 CACTCA-ACGGACCGGAGAGCCAGAATCCGCAAGCTG-GGAATCGACCTGATCCCCCCTGCGTGC
43448 T
129 T
43449 GTCATCCTAC
Statistics
Matches: 111, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
158 8 0.07
159 98 0.88
160 5 0.05
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGG
CACTCAACGGACCGGAGAGCCAGAATCCGCAAGCTGGGAATCGACCTGATCCCCCCTGCGTGCTA
CCGGTCTCGCTACCACAAACCTCAGCCC
Found at i:43893 original size:26 final size:26
Alignment explanation
Indices: 43864--43916 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
43854 CCGATCGGAT
43864 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
43890 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
43916 C
1 C
43917 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:44212 original size:157 final size:158
Alignment explanation
Indices: 43890--44539 Score: 657
Period size: 157 Copynumber: 4.1 Consensus size: 158
43880 ACTCCGTATG
* * * * * *
43890 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTAC-GGTACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTGAG
* *
43953 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCCTGCGTGCTATCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTGCGTGCTATCGATC
* * * *
44018 CTGCTA-CTGCAACCCTTGGTTCGATCCAAT
129 CTGCTATC-GCAACCCTCGGTCCGGTCCGAT
* * *
44048 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTGAGC
* * * * *
44113 CGACCGGAGAGGCATAATACGCAAGTCGAGGATCGGCCCGGT-CCCCCTGTGTGCTATCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCT
* *
44177 GCTATCGCAACCTTCGGTCCGGTCTGAT
131 GCTATCGCAACCCTCGGTCCGGTCCGAT
* ** * *
44205 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAGCGTGCAGTCATTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTGAGC
** * * * * * * *
44270 CGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTACTGTCGGTCCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCT
* ** * * * * **
44335 GTTGCCACAACCCTCGGT-CTGACTGGGG
131 GCTATCGCAACCCTCGGTCCGGTC-CGAT
* * * * * ** *
44363 CTTAGAAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTGAGC
* * * * *
44427 CGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCTGGTCCTCCCTGCGTGCTACCGATCTT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCT
* * *
44492 ACTGTCGCAACCCTC-GTCTGGTCCGAT
131 GCTATCGCAACCCTCGGTCCGGTCCGAT
*
44519 CTTAGATTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
44540 ATATTCTTAG
Statistics
Matches: 399, Mismatches: 86, Indels: 15
0.80 0.17 0.03
Matches are distributed among these distances:
156 10 0.03
157 262 0.66
158 84 0.21
159 43 0.11
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTGAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCT
GCTATCGCAACCCTCGGTCCGGTCCGAT
Found at i:45280 original size:26 final size:26
Alignment explanation
Indices: 45242--45294 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
45232 GGCTCAAACT
*
45242 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
45268 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
45294 C
1 C
45295 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:45621 original size:26 final size:26
Alignment explanation
Indices: 45585--45637 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
45575 CCAGTTTGAT
45585 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
45611 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
45637 C
1 C
45638 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:46334 original size:26 final size:26
Alignment explanation
Indices: 46293--46345 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
46283 CTGTTCTGAT
*
46293 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
* *
46319 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
46345 C
1 C
46346 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:46718 original size:169 final size:157
Alignment explanation
Indices: 46525--46900 Score: 423
Period size: 169 Copynumber: 2.3 Consensus size: 157
46515 GCGTAGACAT
* * * *
46525 GGAATGAACTCCGTAT-CTCTAAGCCAAGCCACGAAACGAGCGTGCGGGCACTCAGTCGATCGGA
1 GGAATGAACT-CGTATGC-CTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACCGGA
* ** * * *
46589 GAGCCATAATGCGTGAGCCAGGGATCGACCTGGTCC-CCCTGCATGCTGTTGATCCTACTGCTGG
64 GAGCCAGAATGCGCAAGCCAGGGACCGACCCGATCCTCCCTGCATGCTGTTGAT-C--CTGCT-G
* **
46653 TCCTGGTGCCACAACCCTTAGTCTGGTCTGATCTTAGACTG
125 ---T--TG---CAACCCTCAGTCTGGTCCAATCTTAGACTG
* *
46694 GGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAG
1 GGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACCGGAG
* *
46759 AGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCTCCCTGCGTGCTGTTGATCCTGCTGTTGCA
65 AGCCAGAATGCGCAAGCCAGGGACCGACCCGATCCTCCCTGCATGCTGTTGATCCTGCTGTTGCA
46824 ACCCTCAGTCTGGTCCAATCTTAGACTG
130 ACCCTCAGTCTGGTCCAATCTTAGACTG
* *
46852 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGTGCGTGCGGGC
1 GGAATGAACTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
46901 GTTGAGCCGA
Statistics
Matches: 183, Mismatches: 21, Indels: 17
0.83 0.10 0.08
Matches are distributed among these distances:
157 1 0.01
158 71 0.39
161 2 0.01
163 1 0.01
166 1 0.01
167 5 0.03
169 85 0.46
170 17 0.09
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACCGGAGA
GCCAGAATGCGCAAGCCAGGGACCGACCCGATCCTCCCTGCATGCTGTTGATCCTGCTGTTGCAA
CCCTCAGTCTGGTCCAATCTTAGACTG
Found at i:46948 original size:158 final size:158
Alignment explanation
Indices: 46653--47179 Score: 535
Period size: 158 Copynumber: 3.3 Consensus size: 158
46643 CTACTGCTGG
* * * *
46653 TCCTGGTGCCACAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTAC-GTATGCCTAAG
1 TCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACT-CTGTATGCCTAAG
* * * * *
46717 CCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCAGGGA
65 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCACAAGCCGGGGA
** * * **
46782 CCGACCCGATCCTCCCTGCGTGCTGTTGA
130 TAGGCCCGATCCCCCCTGCGTGCTGCCGA
** * *
46811 TCCTGCTGTTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
1 TCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
* * * * *
46876 CAACCCACGAAACGTGCGTGCGGGCGTTGAGCCGACTGGAGAGGCATAATGCACAAGCTGGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCACAAGCCGGGGAT
* * *
46941 TGGCCCGATCCCCCTCTGCGTGCTACCGG
131 AGGCCCGATCCCCC-CTGCGTGCTGCCGA
* * * * * * ** *
46970 TCCCGCTGCCACAACCCTCGGTC-CGACTGGGGCTTAGACAT-GGAATGAACT-TCCTATGCCTA
1 TCCTGCTGCCGCAACCCTCAGTCTGGTC-CGATCTTAGAC-TGGGAATGAACTCT-GTATGCCTA
* * * *
47032 AGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCG-GTCGGAGAGGCAGAATGCACAAGCCGA
63 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACT-GGAGAGGCAGAATGCACAAGCCGG
* * *
47096 AGATAAGCCC-AGTCCCCCCTACGTGCTGCCGA
127 GGATAGGCCCGA-TCCCCCCTGCGTGCTGCCGA
* * *
47128 TCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTTGACTGGGAATGAACTC
1 TCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTC
47180 ATTATGCTTA
Statistics
Matches: 297, Mismatches: 62, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 174 0.59
159 120 0.40
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
TCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCACAAGCCGGGGAT
AGGCCCGATCCCCCCTGCGTGCTGCCGA
Found at i:47912 original size:26 final size:26
Alignment explanation
Indices: 47883--47935 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
47873 GGCTCAAACT
*
47883 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
47909 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
47935 C
1 C
47936 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:49475 original size:11 final size:11
Alignment explanation
Indices: 49437--49477 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
49427 TTTTTTTTGA
*
49437 ATTTTTTTATT
1 ATTTATTTATT
*
49448 ATTTGTTTATTT
1 ATTTATTTA-TT
49460 ATTTATTTATT
1 ATTTATTTATT
49471 ATTTATT
1 ATTTATT
49478 AGATTAGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (11 bp):
ATTTATTTATT
Found at i:49493 original size:4 final size:4
Alignment explanation
Indices: 49437--49477 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
49427 TTTTTTTTGA
* *
49437 ATTT TTTT A-TT ATTT GTTT ATTT ATTT ATTT A-TT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT
49478 AGATTAGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
3 6 0.19
4 25 0.81
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (4 bp):
ATTT
Found at i:49555 original size:4 final size:5
Alignment explanation
Indices: 49541--49592 Score: 56
Period size: 5 Copynumber: 10.6 Consensus size: 5
49531 TTTACTTTTC
*
49541 TTTAT TTTA- TTTAT TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT
49590 TTT
1 TTT
49593 CTTTAAATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
3 3 0.08
4 4 0.10
5 27 0.68
6 2 0.05
7 4 0.10
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:49568 original size:30 final size:30
Alignment explanation
Indices: 49513--49593 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
49503 TTACCCTTAT
**
49513 TTTATTTT-TTATCTTGGTTTT-ACTTTT-C
1 TTTATTTTATTAT-TTTATTTTCACTTTTAC
*
49541 TTTATTTTATTTATTTTATTTTCACTTTTAT
1 TTTATTTTA-TTATTTTATTTTCACTTTTAC
*
49572 TTTGTTTTATTATTTTATTTTC
1 TTTATTTTATTATTTTATTTTC
49594 TTTAAATAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
28 8 0.18
29 6 0.13
30 23 0.51
31 8 0.18
ACGTcount: A:0.15, C:0.07, G:0.04, T:0.74
Consensus pattern (30 bp):
TTTATTTTATTATTTTATTTTCACTTTTAC
Found at i:49586 original size:13 final size:13
Alignment explanation
Indices: 49509--49592 Score: 53
Period size: 13 Copynumber: 5.9 Consensus size: 13
49499 CTTTTTACCC
49509 TTATTTTATTTT-
1 TTATTTTATTTTA
**
49521 TTATCTTGGTTTTA
1 TTAT-TTTATTTTA
*
49535 CTTTTCTTTATTTTA
1 -TTAT-TTTATTTTA
49550 TTTATTTTATTTTCA
1 -TTATTTTATTTT-A
*
49565 CTTTTATTTTGTTTTA
1 ---TTATTTTATTTTA
49581 TTATTTTATTTT
1 TTATTTTATTTT
49593 CTTTAAATAA
Statistics
Matches: 57, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
12 4 0.07
13 17 0.30
14 8 0.14
15 15 0.26
16 1 0.02
17 12 0.21
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:49702 original size:62 final size:58
Alignment explanation
Indices: 49649--49838 Score: 265
Period size: 58 Copynumber: 3.2 Consensus size: 58
49639 GTATCAATTT
* * * *
49649 TCAATTTTCCTTGAAGATCAAAATTTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTA
1 TCAATTTTCCTTAAAAAT--AAATTTT-C-AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTA
*
49711 TCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTA
1 TCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTA
49769 TCAATTTTCCTTAAAAATAAATTTTCAAATAAATCA-ATTTTTGAGGAAAAGTTGAAAGTA
1 TCAATTTTCCTTAAAAATAAATTTTCAAA-AAA--AGATTTTTGAGGAAAAGTTGAAAGTA
49829 TCAATTTTCC
1 TCAATTTTCC
49839 CTACACAAAA
Statistics
Matches: 119, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
58 58 0.49
59 4 0.03
60 40 0.34
61 1 0.01
62 16 0.13
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (58 bp):
TCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTA
Done.