Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 100 of 195
Found at i:18027494 original size:58 final size:57
Alignment explanation
Indices: 18027344--18027560 Score: 328
Period size: 60 Copynumber: 3.7 Consensus size: 57
18027334 AAATTTCCAA
* **
18027344 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTAA
1 AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
18027402 AAAAAAAGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAA--TATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
18027462 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
1 AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
18027519 CAAAAAATACTTTTGGGAAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCC
18027561 CTACACAAGA
Statistics
Matches: 149, Mismatches: 5, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
56 3 0.02
57 40 0.27
58 51 0.34
59 2 0.01
60 53 0.36
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.34
Consensus pattern (57 bp):
AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:18027551 original size:57 final size:57
Alignment explanation
Indices: 18027344--18027560 Score: 330
Period size: 58 Copynumber: 3.7 Consensus size: 57
18027334 AAATTTCCAA
* *
18027344 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTAA
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT-C
18027402 AAAAAAAGGTATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAA--TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
18027462 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
* *
18027519 CAAAAAATACTTTT-GGGAAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTAGGG-AAAAGTTGAAAGTATCAATTTTCC
18027561 CTACACAAGA
Statistics
Matches: 149, Mismatches: 4, Indels: 13
0.90 0.02 0.08
Matches are distributed among these distances:
56 3 0.02
57 40 0.27
58 51 0.34
59 2 0.01
60 50 0.34
61 3 0.02
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.34
Consensus pattern (57 bp):
AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
Found at i:18028436 original size:26 final size:26
Alignment explanation
Indices: 18028399--18028451 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18028389 GTTGACTTAG
18028399 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
18028425 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18028451 G
1 G
18028452 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18029354 original size:26 final size:26
Alignment explanation
Indices: 18029302--18029354 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18029292 GTTGACTTAG
*
18029302 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
18029328 GCATATGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18029354 G
1 G
18029355 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:18030242 original size:26 final size:26
Alignment explanation
Indices: 18030213--18030265 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18030203 GTTGACTTAG
18030213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
18030239 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18030265 G
1 G
18030266 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18031150 original size:26 final size:26
Alignment explanation
Indices: 18031114--18031166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18031104 GTTGACTTAG
* *
18031114 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18031140 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18031166 G
1 G
18031167 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:18031488 original size:901 final size:902
Alignment explanation
Indices: 18028205--18034822 Score: 8498
Period size: 911 Copynumber: 7.4 Consensus size: 902
18028195 TCGATCCACA
* * * * *
18028205 GCCCGTCCGCCCGCTCGTTTCGTCGGTTCGCTTAGGCATACGAAGTTCATTCCAAGTCTAAGATT
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
18028270 GGACCAGACCGAGTGTTGCGATAGTAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCTCG
65 AGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCG
* * * * *
18028335 GCTTGCGCATCCCGCCCCTCTGGCTGGTTGAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
130 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * *
18028400 CATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
195 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
** * * * * ** *
18028465 GAGGGTTACGACAGCACCTGCTAGGCTCGAGCATGTGCTGGTGACTTATTTTTCTTCGTTGGGGC
260 GAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
18028530 ACCATCGTC-GAAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
325 ACCATCGCCAG-AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* *
18028594 CCGGGGGGGTGTGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
389 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
18028659 TCCCTCTTCAAA--TGTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
453 TCCCTCATCAAACCT-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
18028722 TGCTAGTAGCCATTAAAGTGTCTGGAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
517 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
18028787 ACTACGAGTTTTTAGCTGAA-TGTTTTGTGCAAGTCAACAAAAATACAAGGATCACGTCTACCAA
582 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * *
18028851 GTTTTGGGCCAAAACTCCTTCCGAACAAATTTTAAAAAATCCCGAACCATAAAAATTTTTGAAAA
647 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAA
* * *
18028916 TTGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGGTTAAGGGACCATTG
712 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* ***
18028981 TATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
777 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
* *
18029046 ATACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
842 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCC
* * * * * * *
18029108 GCCTGTCTGCCCGCTCGTTTCGTCGGTTGGCTCAGGCATACGGAGTTTATTTCCAGTCTAAGATG
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
18029173 AGATCAGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAAAGAGAGACCCGGCCGATCCCCA
65 AGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCG
* * ** *
18029238 GCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCCCGCACGCTTGTTCCGTGGGTTGACTTAGG
130 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * * *
18029303 CATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATGTAAGATCAGATCAGACC
195 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* ** * *
18029368 GAGGGTTACGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTATCGCATTTTTCTTCATCGTGGC
260 GAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * ** *
18029433 ACCATCGTCGGAGCATTGCCGGAGAACCTGACTGACGGCATTACGGTTCCGACGGTC-GGGGGGC
325 ACCATCGCCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
18029497 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
390 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
18029562 CCCTCATCAAACC-TCGAAAACTCACACCCCC-TAAGATAGCATTTGAGATTTTACAGGTTTGCT
454 CCCTCATCAAACCTTCGAGAACTCACACCCCCTTAA-AGAGCATTTGAGATTTTACAGGTTTGCT
* *
18029625 GCCAGTAGCCATTCAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACA
518 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
18029690 CTTCGAGTTGTTAGCTTAATTTTTTTGTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAG
583 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * * *
18029755 TTTTGGGCCAAAACCCCATCCGAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAAT
648 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAAT
* * * * *
18029820 CATGAAAAATAGAAATCTAGTCGTCTGGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGT
713 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
18029885 ATGAATTTACAAGCCTTAAAAATGGCAATGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCA
778 ATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCA
*
18029948 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCTCGCCTGC
841 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTG--C-CC-GC
18030013 CC
901 CC
* * * *
18030015 GCCCGCCCGCCTGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAA
1 GCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
18030080 GATCGGACCAGACCAAGGGTTGCAATAGTAGGATCAGAAGCACGTAGAGGGGGACCCGGCCGATC
61 GATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATC
* * * * * *
18030145 CCCGGGTTACGCATCCTGCCCCTCTGGCCTGCTGAGCGCCCGTACGTTCATTTCGTGGGTTGACT
126 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACT
* * *
18030210 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCA
191 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * ** * * ** *
18030275 GACTGAGAGTTGTGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTTGTCG
256 GACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * * ** *
18030340 GGGCACCATCGCTAGAGTATCGTCGGAGAACCTGGCCGGCGGCATTGGGGTTCCGGTGATTGGGG
321 GGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
* * * *
18030405 GGTCGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGG-ACTTGGCCCTTATGTTGGCCT
386 GGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCC
* *
18030469 CCTATCCCTCA-CAAACCTT-GAGAACTCTCACCGCCTTAAAGAGCATTTGAGATTTTACAGGTT
449 CCTATCCCTCATCAAACCTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
18030532 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
514 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
18030597 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCCCACCAACAAAAATACAAGGATCACATCTAC
579 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTAC
* * * * *
18030662 CAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGA
644 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGA
* * *
18030727 AAATCGTGAAAAGTAGAAAACGAGTCGTCTTGCCTTGAAACTTCACATGAAGGCTTAAGGGACCA
709 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
18030792 TTGTATGAATATGCAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
774 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
* *
18030857 CACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCTC
839 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCC
** * *
18030922 GCATGCCCGCCCGCTCGTTTTGTCGGTTGGCTTA-CATACGGAGTTCATTCCTAGTCTAAGATCA
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * * * *
18030986 GA-CAGGACTGAGGGATGTGGCAGCAAGATTGGCAGCAAGCAGAGGGGGACCAGGTCGATCCTCG
66 GACCA-GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCG
* * * *
18031050 GCTTGTGCATCCCGCCCTTCTGGCCGGCTGAACGCCCGCACGCTTATTTCGTGGGTTGACTTAGG
130 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * *
18031115 CATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACC
195 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * *
18031180 GAGGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCAGGGC
260 GAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * *
18031245 ACCATCGCCAGAGCATCCCCAGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGC
325 ACCATCGCCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
18031310 CGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATC
390 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
18031375 CCTCATCAAACCTTC-AGAACTAACACCCCCTTAATA-AGCATTTGAGATTTTACAGGTTTGCTG
455 CCTCATCAAACCTTCGAGAACTCACACCCCCTTAA-AGAGCATTTGAGATTTTACAGGTTTGCTG
*
18031438 CCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
519 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * *
18031503 TTCGAGTTTTTAGCTAAATGTTTTTGTGCACACCAAAAAAAATACAAGGATCATGTCTGCCAAGT
584 TTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
18031568 TTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATC
649 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATC
* * * * * *
18031633 GTGAAAAATAGAAATCTAGTCATCTGGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTA
714 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
18031698 TGAATTTACAAGCC-TTAAAA----A-TGGCACGTAGAAATATGAAGATGTGCCCAAACCCACCT
779 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
18031757 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACATAGTGCTCGCCC
844 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCC
* *
18031817 GCCCACCCGCCTACCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCGCCCG-C--CC-GCTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTAA
* * *
18031882 GATCAGACCAGACCGA--G-T---GTTGC---A---GCAGCATGCAGAGGGGGACCCAGCCGATC
61 GATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATC
* * * * * *
18031935 CTCGGCTTGCGCAT-CAGTCTCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAC
126 CCCGGCTTGCGCATCCCG-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGAC
* ** *
18031999 TTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACT
190 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * ** * * *
18032064 GGACCAAGGGTTACGGTAGAACATGCTAAGCTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGAC
255 GGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
18032129 TGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCAACGGCATTGGGGTTCCGACGATCGGG
320 GGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
18032194 GGGG-CGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
385 GGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
18032258 CCTATCCCTCATCAAACC-TCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
449 CCTATCCCTCATCAAACCTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
18032322 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCATG
514 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
18032387 TACACATCAAGTTTTTAGCTGAATTTTTTTGTGTACGCTAAAAAAAATACAAGGATCACGTCTAC
579 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTAC
* * * * * *
18032452 CAAGTTTGGGGCCAAAACGCCTAT-CAAAAAAATTTAAAAAAATCCCAAATCGTAAAAAGTTTCA
644 CAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCG
* * *
18032516 AAAATCGTGAAAAATAGAAAACGAGTCATCTCGCCACGAAACTTCACGTGAAGGCTTAAGGGACC
708 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
18032581 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAAC
773 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAAC
* * *
18032646 CCACCTACCACCCTACCGATCCACGGCTTGCACATCTCGTCTCTCTGGCCGACGTAGT----GCC
838 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCC
18032707 C
902 C
** ** *
18032708 GCCAACCCATCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
18032773 AGACC-GAACTC-AGGTTTGCGGCAGCAGGATCGGCAGCACGTAGAGAGGGACCC-ACTCGATCC
65 AGACCAG-AC-CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGC-CGATCC
* * * *
18032835 CCGGCTTGCGCATCTCGCCCGTCTGGTCGGCCGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
127 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
* * * * *
18032900 AGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAATTCATTCCCAGTCTATGATCGGACTGG
192 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * *
18032965 ACCAAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCTG
257 ACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * * *
18033030 GGCACCATCGTCGGAGCATCGTCTGAGAACTTGACCCG-CGGCATTGGGGTTCCGACGATC-GGG
322 GGCACCATCGCCAGAGCATCGCCGGAGAACCTGA-CCGACGGCATTGGGGTTCCGACGATCGGGG
*
18033093 GGGCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
386 GGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
18033158 CTATACCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
450 CTATCCCTCATCAAACCTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
18033222 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
515 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
18033287 ACACATCGAGCTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACC
580 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACC
* * *
18033352 AAGTTT-GGGCCAGAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT-TAA
645 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAA
*
18033415 AATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-
710 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
18033479 T-TATGAATTTACAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
775 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
* * *
18033543 ACCTACCACCCTATCGATCCATGGCTTGCGCATCACGTCTCTCTGGCCGGCGTAGTACCCGCCC
840 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCC
** * * *
18033607 GCCTTCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
18033672 AGACCCGACTGAGGGTTACGGTAGCAGGATCGACAGTACACAGAGGGGGACCCGACCGATCCCCG
65 AGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCG
* * * *
18033737 GCTGGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGTACGCTCATTT--T--G-T-A--T--G
130 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * *
18033792 --T--TGA---C-TT---A--C---GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGTACT
195 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * *
18033841 GAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGC
260 GAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * *
18033906 ACCATCGCTAGAGCATC-CCTAGAGAACCTGACCCG-CGGCATTGGGGTTTCGACGATCGGGGGG
325 ACCATCGCCAGAGCATCGCC-GGAGAACCTGA-CCGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
18033969 GCGGGGGGTGTGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
388 GCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
18034034 ATACCTCATCAAACCTT-GAGAACTCATACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGT
452 ATCCCTCATCAAACCTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
18034098 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
517 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
18034163 ACTTCGAGTTTTTAGCTGAA-TGTTTTGTGCACGCCAACAAAAATACAAGGATCGCGTCTACCAA
582 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAA
*
18034227 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCGAAAA
647 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAA
* * *
18034292 TCGTGAAAAATAGAAATCTAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTG
712 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
18034357 TATAAATTTACAAGCCTTAAAAATGGCA----CGCA-A-AAATATGAAGATGTGCCTAAACCCAC
777 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
* *
18034416 CTACCACCCTAATCGGATCCATGGGCTTGCCGCATACCCGGTCTTCTCTGGTCGGCGTAGTGCTC
842 CTACCACCCT-ATC-GATCCA-CGGCTTG-CGCAT-CCC-GTC-TCTCTGG-CCGCGTAGTG---
18034481 ACCCGCCC
896 -CCCGCCC
* * * *
18034489 ACCCGCCTGCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * * * * *
18034554 AGACCAGATCGAATGTTGCAGTAACAGGATCAGCAGCACGTAGAGGGGGACCCGGTCGATCCTCG
65 AGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCG
* * * * ** * * *
18034619 GCATGTGCATCCCACCCCTTTGGCTAGTTGAGCACCCGCACGCTCCTTTCGTGGGTTGACTTAGG
130 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* *
18034684 CATACGGAGTTCATTCCTACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
195 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * * *
18034749 GAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGATGGTGCCACATTTTTCTTTGTCGGGAC
260 GAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
*
18034814 ACGATCGCC
325 ACCATCGCC
18034823 CTTATATTGG
Statistics
Matches: 5003, Mismatches: 592, Indels: 235
0.86 0.10 0.04
Matches are distributed among these distances:
871 36 0.01
872 5 0.00
873 191 0.04
874 268 0.05
875 68 0.01
876 4 0.00
877 28 0.01
878 15 0.00
879 1 0.00
881 2 0.00
882 151 0.03
884 1 0.00
885 1 0.00
886 2 0.00
887 61 0.01
888 14 0.00
889 612 0.12
890 8 0.00
891 12 0.00
892 2 0.00
893 4 0.00
894 4 0.00
895 293 0.06
896 7 0.00
897 64 0.01
898 55 0.01
899 672 0.13
900 77 0.02
901 633 0.13
902 203 0.04
903 608 0.12
904 4 0.00
905 3 0.00
906 2 0.00
907 14 0.00
908 102 0.02
909 3 0.00
910 2 0.00
911 695 0.14
912 74 0.01
913 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGG
CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCGCCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGCCCGCCC
Found at i:18032941 original size:26 final size:26
Alignment explanation
Indices: 18032902--18032952 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18032892 GTTGACTTAG
*
18032902 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
18032928 GCATACGAAATTCATTCCCAGTCTA
1 GCATACGAAATTCATTCCCAGTCTA
18032953 TGATCGGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:18033169 original size:899 final size:897
Alignment explanation
Indices: 18028215--18034804 Score: 8365
Period size: 899 Copynumber: 7.3 Consensus size: 897
18028205 GCCCGTCCGC
* * * **
18028215 CCGCTCGTTTCGTCGGTTCGCTTAGGCATACGAAGTTCATTCCAAGTCTAAGATTGGACCAGACC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * *
18028280 GAGTGTTGCGATAGTAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCAT
66 -AGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * * *
18028345 CCCGCCCCTCTGGCTGGTTGAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGT
130 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
*
18028410 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACG
195 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACG
** * * * * **
18028475 ACAGCACCTGCTAGGCTCGAGCATGTGCTGGTGACTTATTTTTCTTCGT-TGGGGCACCATCGTC
260 GTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCT-GGGCACCATCGTC
* * * *
18028539 GAAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
324 GGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATC-GGGGGG-CGGGGGGGT
* * *
18028604 GTGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCTTCA
387 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
** * *
18028669 AATGTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCA
452 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
18028734 TTAAAGTGTCTGGAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTT
517 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
18028799 TAGCTGAA-TGTTTTGTGCAAGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAA
582 TAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * *
18028863 AACTCCTTCCGAACAAATTTTAAAAAATCCCGAACCATAAAAATTTTTGAAAATTGTGAAAAATA
647 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATA
* *
18028928 GAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACA
712 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *** *
18028993 AGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTAT
777 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
18029058 CAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGTCTGC
842 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGCC---C-GT
* * * * *
18029118 CCGCTCGTTTCGTCGGTTGGCTCAGGCATACGGAGTTTATTTCCAGTCTAAGATGAGATCAGACC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * * *
18029183 GAGGGTTGCGGTAGTAGGATCGACAGCACGCAAAGAGAGACCCGGCCGATCCCCAGCTTGCGCAT
66 -AGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * ** *
18029248 CCCACCCCTTTGGCCGGCTGAGCGCCCGCACGCTTGTTCCGTGGGTTGACTTAGGCATACGGAGT
130 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * *
18029313 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATGTAAGATCAGA-TCAGACCGAGGGTTAC
195 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTAC
* ** *
18029377 GGTAGCACATGCTGGGCTTGGGCATGTGCTGGTATCGCATTTTTCTTCATC-GTGGCACCATCGT
259 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTG-GGCACCATCGT
* * ** *
18029441 CGGAGCATTGCCGGAGAACCTGA-CTGACGGCATTACGGTTCCGACGGTCGGGGGGCCGGGGGGG
323 CGGAGCATCGCCGGAGAACCTGACCCG-CGGCATTGGGGTTCCGACGATCGGGGGG-CGGGGGGG
18029505 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
386 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
18029570 AAACCTCGAAAACTCACACCCCC-TAAGATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
451 AAACCTCGAGAACTCACACCCCCTTAA-AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
18029634 CATTCAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTT
515 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * *
18029699 GTTAGCTTAATTTTTTTGTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTTGGGCC
580 TTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
18029764 AAAACCCCATCCGAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAA
645 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAA
* * * *
18029829 TAGAAATCTAGTCGTCTGGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTA
710 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
18029894 CAAGCCTTAAAAATGGCAATGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACC
775 CAAGCCATAAAAATGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
18029957 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCTCGCCTGCCCGCCCGC
838 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCAGCCCGT
* * *
18030021 CCGCCTGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGG
1 CCG-CT---CG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * * * * *
18030086 ACCAGACCAAGGGTTGCAATAGTAGGATCAGAAGCACGTAGAGGGGGACCCGGCCGATCCCCGGG
58 ACCAGACC-AGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * *
18030151 TTACGCATCCTGCCCCTCTGGCCTGCTGAGCGCCCGTACGTTCATTTCGTGGGTTGACTTAGGCA
122 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * ** *
18030216 TACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGA
187 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA
* ** * * ** * *
18030281 GAGTTGTGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTTGTCGGGGCAC
252 GGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGGCAC
* * * * * ** *
18030346 CATCG-CTAGAGTATCGTCGGAGAACCTGGCCGGCGGCATTGGGGTTCCGGTGATTGGGGGGTCG
317 CATCGTC-GGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGG-CG
* *
18030410 GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGG-ACTTGGCCCTTATGTTGGCCTCCTAT
380 G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
18030474 CCCTCA-CAAACCTTGAGAACTCTCACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
443 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
18030538 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
508 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
18030603 TCGAGTTTTTAGCTGAATTTTTTTGTGCCCACCAACAAAAATACAAGGATCACATCTACCAAGTT
573 TCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
18030668 TGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCG
638 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCG
* * *
18030733 TGAAAAGTAGAAAACGAGTCGTCTTGCCTTGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
703 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
18030798 GAATATGCAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
768 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
*
18030863 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCTCGCATG
833 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCG--C-CA-G
*
18030927 CCCGC
893 CCCGT
* *
18030932 CCGCTCGTTTTGTCGGTTGGCTTA--CATACGGAGTTCATTCCTAGTCTAAGATCAGA-CAGGAC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GAC
* * * * * * * * ** * *
18030994 TGAGGGATGTGGCAGCAAGATTGGCAGCAAGCAGAGGGGGACCAGGTCGATCCTCGGCTTGTGCA
65 -CAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * *
18031059 TCCCGCCCTTCTGGCCGGCTGAACGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAG
129 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
* * * ** *
18031124 TTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGC
194 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTAC
* * * * *
18031189 GGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCAGGGCACCATCGCC
259 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGTC
* * * * * *
18031254 AGAGCATCCCCAGAGAACCTGA-CCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGAGGGGT
324 GGAGCATCGCCGGAGAACCTGACCCG-CGGCATTGGGGTTCCGACGATC-GGGGGGCGGGGGGGT
*
18031318 GTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
387 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
18031383 AACCTTC-AGAACTAACACCCCCTTAATA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
452 AACC-TCGAGAACTCACACCCCCTTAA-AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
18031446 TATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
515 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * * *
18031511 TTTAGCTAAATGTTTTTGTGCACACCAAAAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCC
580 TTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
18031576 AAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAA
645 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAA
* * * * * *
18031641 TAGAAATCTAGTCATCTGGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTATGAATTTA
710 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
18031706 CAAGCC-TTAAAA----A-TGGCACGTAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCT
775 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
18031765 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACATAGTGCTCGCCCGCCCA-CCCGCCT
840 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCG-CCAGCCCG--T
*
18031829 ACCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
1 -CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * *
18031894 CC-GAG-T---GTTGC---A---GCAGCATGCAGAGGGGGACCC-AGCCGATCCTCGGCTTGCGC
64 CCAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGC
* * * * *
18031947 AT-CAGTCTCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
128 ATCCCG-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
* ** *
18032011 AGTTTATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTT
192 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT
* ** * * *
18032076 ACGGTAGAACATGCTAAGCTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGACTGGGCACCATCG
257 ACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCG
* ** *
18032141 TCGGAGCATCACCGGAGAACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGTG
322 TCGGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATC-GGGGGGCGGGGGGG
18032206 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
386 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
18032271 AAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
451 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
18032336 ATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCATGTACACATCAAGTTT
516 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
18032401 TTAGCTGAATTTTTTTGTGTACGCTAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
581 TTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
18032466 AAACGCCTAT-CAAAAAAATTTAAAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAA
646 AAACTCCT-TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAA
* * *
18032530 TAGAAAACGAGTCATCTCGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
710 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
18032595 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
775 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
18032660 ACCGATCCACGGCTTGCACATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCAACCCAT
840 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGT
*
18032718 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GAAC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-AC
* * * *
18032782 TCAGGTTTGCGGCAGCAGGATCGGCAGCACGTAGAGAGGGACCC-ACTCGATCCCCGGCTTGCGC
65 -CAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC-CGATCCCCGGCTTGCGC
* * * * *
18032846 ATCTCGCCCGTCTGGTCGGCCGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAA
128 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
* * * *
18032911 GTTCATTCCCAGTCTAAGCATACGAAATTCATTCCCAGTCTATGATCGGACTGGACCAAGGGTTA
193 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTA
* * *
18032976 CGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCTGGGCACCATCGT
258 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGT
* * *
18033041 CGGAGCATCGTCTGAGAACTTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGTGT
323 CGGAGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGG-GT
*
18033106 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCA
387 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
18033171 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
452 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
18033236 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGCTTT
517 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
18033301 TAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAG
582 TAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
18033365 AACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT-TAAAATCGTAAAAAATA
647 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATA
18033429 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-T-TATGAATTTACA
712 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
18033492 AGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
777 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * ** *
18033557 CGATCCATGGCTTGCGCATCACGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCTTCCCGC
842 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCAGCCCGT
* * * *
18033617 CCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCCGACT
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-
* * * * * *
18033682 GAGGGTTACGGTAGCAGGATCGACAGTACACAGAGGGGGACCCGACCGATCCCCGGCTGGCGCAT
65 CAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * ** * *
18033747 CCCGCCCCTCTGGCCGACTGAGCACCCGTACGCTCATTTTGTATGTTGACTTACGCATACGAAGT
130 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
*
18033812 TCATTCCCAGTCTAAG-AT-C--AG---A----C---C---G-T---ACT-----GAGGGTTGCG
195 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACG
* * * *
18033851 GTAGCACATACTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCG-CT
260 GTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGTC-
* * *
18033915 AGAGCATC-CCTAGAGAACCTGACCCGCGGCATTGGGGTTTCGACGATCGGGGGGGCGGGGGGTG
324 GGAGCATCGCC-GGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATC-GGGGGGCGGGGGG-G
* *
18033979 TGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATC
386 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
18034044 AAACCTTGAGAACTCATACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCC
451 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
18034109 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
516 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
18034174 TTAGCTGAA-TGTTTTGTGCACGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCA
581 TTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
*
18034238 AAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAAT
646 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAAT
* * * *
18034303 AGAAATCTAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATAAATTTAC
711 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
18034368 AAGCCTTAAAAATGGCA----CGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
776 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-
* * *
18034427 ATCGGATCCATGGGCTTGCCGCATACCCGGTCTTCTCTGGTCGGCGTAGTGCTCACCCGCCCA-C
840 ATC-GATCCA-CGGCTTG-CGCAT-CCC-GTC-TCTCTGGCCGACGTAGTG----CCCG-CCAGC
18034491 CCGCCT
894 CCG--T
* *
18034497 GCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
1 --CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* ** * * * * ** * * *
18034562 TCGAATGTTGCAGTAACAGGATCAGCAGCACGTAGAGGGGGACCCGGTCGATCCTCGGCATGTGC
64 -CCAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * ** * * *
18034627 ATCCCACCCCTTTGGCTAGTTGAGCACCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGA
128 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
* * * *
18034692 GTTCATTCCTACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
193 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTA
* * *
18034757 CGGTAGCACATGCTGGGCTCGAGCATGTGATGGTGCCACATTTTTCTT
258 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
18034805 TGTCGGGACA
Statistics
Matches: 4982, Mismatches: 564, Indels: 277
0.86 0.10 0.05
Matches are distributed among these distances:
871 36 0.01
872 6 0.00
873 157 0.03
874 270 0.05
875 67 0.01
876 3 0.00
877 28 0.01
878 27 0.01
879 2 0.00
881 1 0.00
882 173 0.03
883 3 0.00
884 1 0.00
885 1 0.00
886 3 0.00
887 58 0.01
888 9 0.00
889 614 0.12
890 11 0.00
891 8 0.00
892 3 0.00
893 5 0.00
894 1 0.00
895 282 0.06
896 5 0.00
897 67 0.01
898 65 0.01
899 714 0.14
900 76 0.02
901 619 0.12
902 214 0.04
903 598 0.12
904 4 0.00
905 1 0.00
906 2 0.00
907 12 0.00
908 53 0.01
909 4 0.00
910 6 0.00
911 702 0.14
912 69 0.01
913 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
AGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGG
TAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGTCGG
AGCATCGCCGGAGAACCTGACCCGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGT
Found at i:18034719 original size:26 final size:26
Alignment explanation
Indices: 18034683--18034735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18034673 GTTGACTTAG
*
18034683 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
18034709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
18034735 G
1 G
18034736 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:18038710 original size:26 final size:26
Alignment explanation
Indices: 18038674--18038726 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18038664 GTTGACTTAG
18038674 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCGA-TCTAA
*
18038700 GCATATGGAGTTCATTCCCGATCTAA
1 GCATACGGAGTTCATTCCCGATCTAA
18038726 G
1 G
18038727 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCGATCTAA
Found at i:18038825 original size:12 final size:12
Alignment explanation
Indices: 18038808--18038841 Score: 61
Period size: 11 Copynumber: 2.9 Consensus size: 12
18038798 ACCAGGGCAC
18038808 CATCGTCGGAGG
1 CATCGTCGGAGG
18038820 CATCGTCGGA-G
1 CATCGTCGGAGG
18038831 CATCGTCGGAG
1 CATCGTCGGAG
18038842 AACCCGACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.18, C:0.26, G:0.38, T:0.18
Consensus pattern (12 bp):
CATCGTCGGAGG
Found at i:18040204 original size:26 final size:25
Alignment explanation
Indices: 18040175--18040231 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
18040165 TTTTCTTTTG
18040175 TATTTTATGTAT-TTTATTATTTATTT
1 TATTTTATGTATATTT-TTATTTA-TT
*
18040201 TATTATATGTATATTTTTATTTATT
1 TATTTTATGTATATTTTTATTTATT
18040226 TATTTT
1 TATTTT
18040232 TTTTGTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 7 0.25
26 18 0.64
27 3 0.11
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.72
Consensus pattern (25 bp):
TATTTTATGTATATTTTTATTTATT
Found at i:18040227 original size:30 final size:27
Alignment explanation
Indices: 18040186--18040254 Score: 79
Period size: 30 Copynumber: 2.5 Consensus size: 27
18040176 ATTTTATGTA
18040186 TTTTATTATTTATTTTATTATATGT-ATAT
1 TTTTATTATTTATTTT-TT-T-TGTAATAT
18040215 TTTTATTTATTTATTTTTTTTGTAATAT
1 TTTTA-TTATTTATTTTTTTTGTAATAT
*
18040243 TTTT-TTGTTTAT
1 TTTTATTATTTAT
18040255 CTTATTGGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
26 7 0.19
27 3 0.08
28 9 0.24
29 7 0.19
30 11 0.30
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (27 bp):
TTTTATTATTTATTTTTTTTGTAATAT
Found at i:18040229 original size:14 final size:14
Alignment explanation
Indices: 18040186--18040232 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
18040176 ATTTTATGTA
18040186 TTTTA-TTATTTA-
1 TTTTATTTATTTAT
18040198 TTTTATTATATGTATAT
1 TTTTATT-TAT-T-TAT
18040215 TTTTATTTATTTAT
1 TTTTATTTATTTAT
18040229 TTTT
1 TTTT
18040233 TTTGTAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 5 0.17
13 1 0.03
14 10 0.33
15 2 0.07
16 5 0.17
17 7 0.23
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (14 bp):
TTTTATTTATTTAT
Found at i:18041214 original size:9 final size:8
Alignment explanation
Indices: 18041194--18041374 Score: 58
Period size: 9 Copynumber: 20.0 Consensus size: 8
18041184 GCTCCATGTT
*
18041194 TTTTTTTC
1 TTTTTTTA
18041202 TTTTTTTAA
1 TTTTTTT-A
18041211 TTTTTTTA
1 TTTTTTTA
*
18041219 TTTTCATTTC
1 TTTT--TTTA
*
18041229 TTTGTTTA
1 TTTTTTTA
*
18041237 TTTGTTTTT
1 TTT-TTTTA
18041246 TTATTTTTA
1 TT-TTTTTA
*
18041255 TTTATTTA
1 TTTTTTTA
***
18041263 TTAGATTA
1 TTTTTTTA
18041271 GGTTTATTTAATA
1 --TTT-TTT--TA
18041284 TTCTTTTTA
1 TT-TTTTTA
18041293 TCTTTATTTTA
1 --TTT-TTTTA
18041304 TTTTCATTT-
1 TTTT--TTTA
*
18041313 TTGTTTTA
1 TTTTTTTA
18041321 CTTTTCTTTA
1 -TTTT-TTTA
18041331 TTTTTTTA
1 TTTTTTTA
18041339 TTTTTATTTA
1 -TTTT-TTTA
18041349 TTTTTTTTA
1 -TTTTTTTA
* *
18041358 TTATTCTA
1 TTTTTTTA
18041366 TTTTCTTTA
1 TTTT-TTTA
18041375 AATAAAAAAT
Statistics
Matches: 131, Mismatches: 20, Indels: 43
0.68 0.10 0.22
Matches are distributed among these distances:
7 3 0.02
8 42 0.32
9 44 0.34
10 26 0.20
11 13 0.10
12 1 0.01
13 2 0.02
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.75
Consensus pattern (8 bp):
TTTTTTTA
Found at i:18041304 original size:11 final size:10
Alignment explanation
Indices: 18041288--18041364 Score: 54
Period size: 10 Copynumber: 7.7 Consensus size: 10
18041278 TTAATATTCT
18041288 TTTTATCTTTA
1 TTTT-TCTTTA
18041299 TTTTAT-TTTCA
1 TTTT-TCTTT-A
*
18041310 TTTTTGTTTTA
1 TTTTT-CTTTA
*
18041321 CTTTTCTTTA
1 TTTTTCTTTA
18041331 -TTTT-TTTA
1 TTTTTCTTTA
*
18041339 TTTTTATTTA
1 TTTTTCTTTA
18041349 TTTTT-TTTA
1 TTTTTCTTTA
*
18041358 TTATTCT
1 TTTTTCT
18041365 ATTTTCTTTA
Statistics
Matches: 57, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
8 4 0.07
9 16 0.28
10 18 0.32
11 16 0.28
12 3 0.05
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.78
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:18041320 original size:22 final size:21
Alignment explanation
Indices: 18041273--18041370 Score: 55
Period size: 22 Copynumber: 4.7 Consensus size: 21
18041263 TTAGATTAGG
* *
18041273 TTTATTTAATATTC-TTTTTAT
1 TTTATTTTATTTTCATTTTT-T
18041294 CTTTATTTTATTTTCATTTTTGT
1 -TTTATTTTATTTTCATTTTT-T
*
18041317 TTTACTTTT-CTTT-ATTTTTT
1 TTTA-TTTTATTTTCATTTTTT
*
18041337 TAT-TTTTA-TTT-ATTTTTTT
1 TTTATTTTATTTTCA-TTTTTT
*
18041356 TATTATTCTATTTTC
1 T-TTATTTTATTTTC
18041371 TTTAAATAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
18 8 0.13
19 7 0.11
20 4 0.07
21 10 0.16
22 22 0.36
23 10 0.16
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.76
Consensus pattern (21 bp):
TTTATTTTATTTTCATTTTTT
Found at i:18041357 original size:27 final size:27
Alignment explanation
Indices: 18041192--18041369 Score: 88
Period size: 27 Copynumber: 6.1 Consensus size: 27
18041182 CCGCTCCATG
* * *
18041192 TTTTTTTTTCTTTTTTTAATTTTTTTA
1 TTTTTATTTATTTTTTTTATTTTTTTA
* * *
18041219 TTTTCATTTCTTTGTTTATTTGTTTTTTTA
1 TTTTTATTT-ATT-TTT-TTTATTTTTTTA
* ** **
18041249 TTTTTATTTATTTATTAGATTAGGTTTA
1 TTTTTATTTATTTTTTTTATT-TTTTTA
*
18041277 TTTAATATTCT-TTTTATCTTTATTTTATTTTCA
1 TTT-TTATT-TATTTT-T-TTTA-TTT-TTTT-A
* *
18041310 TTTTTGTTTTACTTTTCTTTATTTTTTTA
1 TTTTT-ATTTA-TTTTTTTTATTTTTTTA
* *
18041339 TTTTTATTTATTTTTTTTATTATTCTA
1 TTTTTATTTATTTTTTTTATTTTTTTA
18041366 TTTT
1 TTTT
18041370 CTTTAAATAA
Statistics
Matches: 111, Mismatches: 26, Indels: 28
0.67 0.16 0.17
Matches are distributed among these distances:
27 28 0.25
28 15 0.14
29 18 0.16
30 24 0.22
31 5 0.05
32 11 0.10
33 6 0.05
34 4 0.04
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (27 bp):
TTTTTATTTATTTTTTTTATTTTTTTA
Found at i:18041362 original size:12 final size:13
Alignment explanation
Indices: 18041317--18041359 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
18041307 TCATTTTTGT
*
18041317 TTTACTTTTCTTTA
1 TTTA-TTTTTTTTA
*
18041331 TTTTTTTATTTTTA
1 TTTATTT-TTTTTA
18041345 TTTATTTTTTTTA
1 TTTATTTTTTTTA
18041358 TT
1 TT
18041360 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTATTTTTTTTA
Found at i:18041374 original size:17 final size:16
Alignment explanation
Indices: 18041328--18041374 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 16
18041318 TTACTTTTCT
*
18041328 TTATTT-TTTTATTT-
1 TTATTTATTTTCTTTA
*
18041342 TTATTTATTTTTTTTA
1 TTATTTATTTTCTTTA
18041358 TTATTCTATTTTCTTTA
1 TTATT-TATTTTCTTTA
18041375 AATAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 6 0.21
15 7 0.25
16 5 0.18
17 10 0.36
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (16 bp):
TTATTTATTTTCTTTA
Found at i:18047397 original size:9 final size:9
Alignment explanation
Indices: 18047385--18047433 Score: 53
Period size: 9 Copynumber: 4.9 Consensus size: 9
18047375 GAAAAATGAG
18047385 AAAAGAAAA
1 AAAAGAAAA
18047394 AAAAGATGATGAA
1 AAAAGA--A--AA
18047407 AAAAGAAAAA
1 AAAAG-AAAA
18047417 AAAAGAAAA
1 AAAAGAAAA
18047426 AAAAGAAA
1 AAAAGAAA
18047434 TGAGAAAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
9 18 0.51
10 7 0.20
11 1 0.03
12 1 0.03
13 7 0.20
14 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:18047415 original size:19 final size:18
Alignment explanation
Indices: 18047376--18047441 Score: 59
Period size: 20 Copynumber: 3.7 Consensus size: 18
18047366 ACAATAGATG
18047376 AAAAATGAGAAAAGAAAA
1 AAAAATGAGAAAAGAAAA
18047394 AAAAGATGATGAAAA-AAGAA
1 AAAA-ATGA-GAAAAGAA-AA
*
18047414 AAAAA-AAG-AAA-AAAA
1 AAAAATGAGAAAAGAAAA
*
18047429 AGAAATGAGAAAA
1 AAAAATGAGAAAA
18047442 TGAGAAAAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
15 6 0.15
16 7 0.17
17 4 0.10
18 5 0.12
19 7 0.17
20 11 0.28
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (18 bp):
AAAAATGAGAAAAGAAAA
Found at i:18048699 original size:21 final size:21
Alignment explanation
Indices: 18048673--18048716 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
18048663 TACTTTCCAA
18048673 AGTCGTGGTGCCTCTGTTTAG
1 AGTCGTGGTGCCTCTGTTTAG
18048694 AGTCGTGGTGCCTCTGTTTAG
1 AGTCGTGGTGCCTCTGTTTAG
18048715 AG
1 AG
18048717 GAGCAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.11, C:0.18, G:0.34, T:0.36
Consensus pattern (21 bp):
AGTCGTGGTGCCTCTGTTTAG
Found at i:18048750 original size:62 final size:62
Alignment explanation
Indices: 18048653--18048830 Score: 223
Period size: 74 Copynumber: 2.7 Consensus size: 62
18048643 ATGATTGTTA
18048653 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGTCGTGGTGCCTCTGTTTAG
18048715 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGTTTCCAAAGTCGTGGTGCC
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTT-----AG-------AGTCGTGGTGCC
18048780 TCTGTTTAG
54 TCTGTTTAG
* *
18048789 AGGAGCAATTTATTTTCAAAAGTCGTGGTGCCTCT-TTTAGAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
18048831 GAGCAATTTA
Statistics
Matches: 102, Mismatches: 2, Indels: 25
0.79 0.02 0.19
Matches are distributed among these distances:
61 2 0.02
62 39 0.38
67 2 0.02
68 2 0.02
73 3 0.03
74 54 0.53
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (62 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGTCGTGGTGCCTCTGTTTAG
Found at i:18048751 original size:41 final size:40
Alignment explanation
Indices: 18048694--18048877 Score: 240
Period size: 41 Copynumber: 4.7 Consensus size: 40
18048684 CTCTGTTTAG
18048694 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAA
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTCCAA
18048735 AGTCGTGGTGCCTCTGTTTAGAGGAG-------TTTCCAA
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTCCAA
*
18048768 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCAAA
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTCCAA
18048809 AGTCGTGGTGCCTCT-TTTAGAGGAGCAATTTATGTTTCTCAA
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA--TTTC-CAA
* *
18048851 AGTCGTTGAGCCTCTGTTTAGAGGAGC
1 AGTCGTGGTGCCTCTGTTTAGAGGAGC
18048878 TTTGGTAAAA
Statistics
Matches: 127, Mismatches: 5, Indels: 20
0.84 0.03 0.13
Matches are distributed among these distances:
33 33 0.26
40 17 0.13
41 51 0.40
42 15 0.12
43 11 0.09
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (40 bp):
AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTCCAA
Found at i:18048770 original size:33 final size:33
Alignment explanation
Indices: 18048728--18048793 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
18048718 AGCAATTTAC
18048728 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
1 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
18048761 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
1 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
18048794 CAATTTATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.33
Consensus pattern (33 bp):
TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
Found at i:18048815 original size:74 final size:73
Alignment explanation
Indices: 18048694--18048833 Score: 253
Period size: 74 Copynumber: 1.9 Consensus size: 73
18048684 CTCTGTTTAG
*
18048694 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGG
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCT-TTTAGAGG
18048759 AGTTTCCAA
65 AGTTTCCAA
*
18048768 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCAAAAGTCGTGGTGCCTCTTTTAGAGGA
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTTTTAGAGGA
18048833 G
66 G
18048834 CAATTTATGT
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
73 10 0.16
74 54 0.84
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (73 bp):
AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTTTTAGAGGA
GTTTCCAA
Found at i:18048890 original size:1 final size:1
Alignment explanation
Indices: 18048884--18048941 Score: 71
Period size: 1 Copynumber: 58.0 Consensus size: 1
18048874 GAGCTTTGGT
* * * * *
18048884 AAAAAAACAAAAAAAAAAAAACAAAAAAACAAAAAAAAAAAACAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
18048942 TGACAATGTT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:18048897 original size:8 final size:8
Alignment explanation
Indices: 18048884--18048941 Score: 79
Period size: 7 Copynumber: 7.8 Consensus size: 8
18048874 GAGCTTTGGT
18048884 AAAAAAAC
1 AAAAAAAC
18048892 -AAAAAA-
1 AAAAAAAC
18048898 AAAAAAAC
1 AAAAAAAC
18048906 AAAAAAAC
1 AAAAAAAC
18048914 AAAAAAA-
1 AAAAAAAC
*
18048921 AAAAACA-
1 AAAAAAAC
18048928 AAAAAAAC
1 AAAAAAAC
18048936 AAAAAA
1 AAAAAA
18048942 TGACAATGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
7 24 0.53
8 21 0.47
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:18048912 original size:22 final size:23
Alignment explanation
Indices: 18048884--18048941 Score: 102
Period size: 22 Copynumber: 2.6 Consensus size: 23
18048874 GAGCTTTGGT
18048884 AAAAAAACAAAAAAAAAAAAAC-
1 AAAAAAACAAAAAAAAAAAAACA
18048906 AAAAAAAC-AAAAAAAAAAAACA
1 AAAAAAACAAAAAAAAAAAAACA
18048928 AAAAAAACAAAAAA
1 AAAAAAACAAAAAA
18048942 TGACAATGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
21 13 0.38
22 16 0.47
23 5 0.15
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (23 bp):
AAAAAAACAAAAAAAAAAAAACA
Found at i:18050157 original size:15 final size:14
Alignment explanation
Indices: 18050130--18050198 Score: 59
Period size: 15 Copynumber: 4.7 Consensus size: 14
18050120 CCGCTCCAGG
*
18050130 TTTTTTT-TCTTTT
1 TTTTTTTATTTTTT
*
18050143 TTTTTTGATTTTTT
1 TTTTTTTATTTTTT
*
18050157 TTATTTTCATTTCTTT
1 TT-TTTTTATTT-TTT
18050173 GTTTTTTTATTTTTT
1 -TTTTTTTATTTTTT
*
18050188 ATTTATTTATT
1 -TTTTTTTATT
18050199 AGATTAGGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
13 6 0.13
14 7 0.15
15 20 0.43
16 11 0.24
17 2 0.04
ACGTcount: A:0.10, C:0.04, G:0.03, T:0.83
Consensus pattern (14 bp):
TTTTTTTATTTTTT
Found at i:18050194 original size:11 final size:10
Alignment explanation
Indices: 18050130--18050294 Score: 50
Period size: 10 Copynumber: 15.2 Consensus size: 10
18050120 CCGCTCCAGG
18050130 TTTTTTTTCT-
1 TTTTTTTT-TA
18050140 TTTTTTTTTGA
1 TTTTTTTTT-A
18050151 -TTTTTTTTA
1 TTTTTTTTTA
18050160 TTTTCATTTCTT-
1 TTTT--TTT-TTA
*
18050172 TGTTTTTTTA
1 TTTTTTTTTA
18050182 TTTTTTATTTA
1 TTTTTT-TTTA
**
18050193 TTTATTAGATTA
1 TTT-TT-TTTTA
* * *
18050205 GGTTTATTTAA
1 -TTTTTTTTTA
*
18050216 TATTCTTTTTA
1 T-TTTTTTTTA
*
18050227 TCTTTATTTTA
1 T-TTTTTTTTA
* *
18050238 TTTTCATTTTG
1 TTTT-TTTTTA
18050249 TTTTACTTTTCT-
1 TTTT--TTTT-TA
18050261 TTATTTTTTTA
1 TT-TTTTTTTA
*
18050272 TTTTTATTTA
1 TTTTTTTTTA
18050282 TTTTTTTATTA
1 TTTTTTT-TTA
18050293 TT
1 TT
18050295 CTGTTTTCTT
Statistics
Matches: 117, Mismatches: 20, Indels: 35
0.68 0.12 0.20
Matches are distributed among these distances:
9 4 0.03
10 44 0.38
11 44 0.38
12 18 0.15
13 7 0.06
ACGTcount: A:0.15, C:0.05, G:0.04, T:0.76
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:18050273 original size:8 final size:8
Alignment explanation
Indices: 18050249--18050291 Score: 50
Period size: 9 Copynumber: 4.9 Consensus size: 8
18050239 TTTCATTTTG
18050249 TTTTACTTT
1 TTTTA-TTT
18050258 TCTTTATTT
1 T-TTTATTT
18050267 TTTTATTTT
1 TTTTA-TTT
18050276 TATTTATTT
1 T-TTTATTT
18050285 TTTTATT
1 TTTTATT
18050292 ATTCTGTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 10 0.32
9 13 0.42
10 8 0.26
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTATTT
Found at i:18050276 original size:18 final size:18
Alignment explanation
Indices: 18050249--18050296 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
18050239 TTTCATTTTG
*
18050249 TTTTACTTTTCTTTATTT
1 TTTTATTTTTCTTTATTT
*
18050267 TTTTATTTTTATTTATTT
1 TTTTATTTTTCTTTATTT
*
18050285 TTTTATTATTCT
1 TTTTATTTTTCT
18050297 GTTTTCTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTATTTTTCTTTATTT
Found at i:18051263 original size:26 final size:26
Alignment explanation
Indices: 18051234--18051286 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18051224 GTTGACTTAG
18051234 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
18051260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18051286 G
1 G
18051287 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18052996 original size:25 final size:26
Alignment explanation
Indices: 18052966--18053017 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
18052956 GTTGACTTAG
*
18052966 GCATACGGAGTTCATTCCCAGT-TAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18052991 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18053017 G
1 G
18053018 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18053846 original size:26 final size:26
Alignment explanation
Indices: 18053810--18053862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18053800 GTTGACTGAG
18053810 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18053836 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18053862 G
1 G
18053863 ATAGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18054734 original size:26 final size:26
Alignment explanation
Indices: 18054698--18054750 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18054688 GTTGACTTAG
18054698 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
18054724 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18054750 G
1 G
18054751 ATAGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:18055037 original size:899 final size:897
Alignment explanation
Indices: 18053104--18056345 Score: 4432
Period size: 876 Copynumber: 3.6 Consensus size: 897
18053094 GATCGGGTCG
* *
18053104 GGGGGGT-GCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGGTGGTGCACATGATATACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
18053168 TCATCAAA-CT-GAGAACTTCACACCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCCA
66 TCATCAAACCTCGAGAAC-TCACACCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCCA
* *
18053231 GTAGCCATTAAAGTGCCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTA
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTA
* * * *
18053296 GAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATTTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCATGTTTG
*
18053361 GGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATTGTG
260 GGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATTGTG
* * * * * *
18053426 AAAATTGGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTTTGA
325 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGA
* *
18053491 ATTTACAAGCCATAAAAATGGCATTGGAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACT
390 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
18053556 ACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTTGTCGACATAGTGCTAGCCCGCCCACCC
455 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATA--G-T-GCCCG--C-CCT
* * *
18053621 GCCCGCAT-GCTCGTTTCATCGGTTGGCTTAGGCATATGAAGTTCATTCCAAGTCTAAGATCAGA
513 GCCCGC-TCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCATA
** * *
18053685 CCAGAATGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCTTGGCT
577 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCTCGGCT
* * * *
18053750 TGCGCATCCCGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTGAGGCATA
642 TGCGCATCCCGCCCCTCT-GCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
18053815 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATAGGATCGGACCGAGG
706 CGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATAGGAT-GGACCGAGG
* * ** * *
18053880 GCTGTGGTAGCACATGTTGGGCTCGGCCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGTACCA
770 GTTGCGACAGCACATGCTGGGCTCGGCCATGTGCTGGTGCTGTATTTTTCTTCACCGGGGTACCA
* * *
18053945 ---T-----CA---CCGGAGAACCCGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCA
835 TCGTCGGAGCATCGCCGGAGAACCCGACTGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCA
* * *
18053997 AGGGGGTGTGCGCACATGATATACGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCC
1 GGGGGGTG-GTGCACATGATATACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
18054062 CTCATCAAACCTCGAGAAATCACACCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCCA
18054127 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTA
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTA
*
18054192 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTTCCATGTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCATGTTTG
* *
18054257 GGGCCAAAACACCTTTCGAAAAAATTTTAAAAAATCCT-AAACACAAAAAGTTTTAAAAATTGTG
260 GGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATTGTG
*
18054321 AAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGA
325 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGA
*
18054386 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAGGATGTGCCTAAACCCACCTACC
390 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
18054451 ACCCTATCAATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTG-CCTGCCCGCA
455 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCTGCCCGC-
* * *
18054515 T-GCTCGTTTCATCGGTTGGCTTAGGCATATGAAGTTCATTCCAAGTCTAAGACCATACCAGACC
519 TCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCATACCAGACC
* * *
18054579 GAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGAGGACCCAGTCGATCCTCGGCTTGCGCAT
584 GAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCAT
* *
18054644 CCCGCTCCTCTAGCTGGCTGAGCGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGT
649 CCCGCCCCTCT-GC-GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
18054709 TCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATAGGACTGGACCGAGGGTTGCG
712 TCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATAGGA-TGGACCGAGGGTTGCG
* **
18054774 ACAGCACATGCTAGGCTCGGCCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGTACCATCGTCG
776 ACAGCACATGCTGGGCTCGGCCATGTGCTGGTGCTGTATTTTTCTTCACCGGGGTACCATCGTCG
*
18054839 GAGCATCGCCGGAGAACCCGACTGACGGCATTGGGGTTCCGGTGATC-GGGGGGCCA
841 GAGCATCGCCGGAGAACCCGACTGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCA
* *
18054895 GGGGGGGTGAGTGCACATGATATATGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATC
1 -GGGGGGTG-GTGCACATGATATACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
18054960 CCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCC
64 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCC
18055025 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTT
129 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTT
*
18055090 AGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCATGTTT
194 AGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCATGTTT
* * * *
18055155 GGGGCCAAAACACCTTCCGAAAGAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATTGT
259 GGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATTGT
* * *
18055220 GAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATG
324 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATG
* *
18055285 AATTTACAAGGCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTAC
389 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
18055350 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCC-ACCTGCCCGC
454 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCTGCCCGC
* * * * * *
18055414 TCGCCCGTTCATTTTATCAGTTGGCTTAGGCATACGGAGCTCATTCCCAGCCTAAGATC-TAACC
519 TCG--C--TCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCAT-ACC
* ** * * * *
18055478 -GAACCGAGGGTTGCAGCAATAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTT
579 AG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCTCGGCTT
* * * *
18055542 GTGCATCCCGCCCCTCTGACCGACTGAGCGCCTGCATGGTCGTTTCGTGGGTTGACTTAGGCATA
643 GCGCATCCCGCCCCTCTG--CGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
18055607 CAGAGTTCATTCCCAATCTAAG-AT-C-GA----A---C----C--------GA---ACCGAGGG
706 CGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATAGGATGGACCGAGGG
* * ** **
18055647 TTGC-AGCAGCACATGCTGGGCTCGGGCATATGCTGGTG-TCGTATTTTTCTTCACCCAGACACC
771 TTGCGA-CAGCACATGCTGGGCTCGGCCATGTGCTGGTGCT-GTATTTTTCTTCACCGGGGTACC
* * * * * *
18055710 ATCGCCGGAGCATCGCCAGAGAACCTGA-TCGGCGACATTGGGGTTCCGGCGATCAGGAGGGCC-
834 ATCGTCGGAGCATCGCCGGAGAACCCGACT-GACGGCATTGGGGTTCCGGCGATCAGGGGGGCCA
* * * * *
18055773 GGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGG-CCCCTATTC
1 GGGGGGTGGT-GCACATGATATACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
18055837 CTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCCA
* * * * * *
18055902 GTAGCAATTAAAGTGTTTGAAATGGGGACACCTTTTTCAAATGGTCAGAAAATCTTGTACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTA
* * * ** * *
18055967 GAGTTTTTAGGTGAATTTTTTTTTTCATGCCAAAAAAAATACAAGGATCAGGTCTACGACGTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCATGTTTG
* * * *
18056032 GGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTG
260 GGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATTGTG
*
18056097 AAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTG-AAGACTTAAGGGACCATTGTATG
325 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAG-CTTAAGGGACCATTGTATG
* * *
18056161 AATTTACAAGCCATAAAAATGGCATTGGCATGCA-AGAATATGAAGATGTTCCTAAACCCACCTA
389 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGA-AATATGAAGATGTGCCTAAACCCACCTA
* * * * *
18056225 CCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGTCCGC
453 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCC-T--GC
** * * *
18056290 CCGCTCGCTCATTTTGTCGGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAG
515 CCGCTCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCAAGTCTAAG
18056346 CATACGGAGT
Statistics
Matches: 2130, Mismatches: 179, Indels: 97
0.89 0.07 0.04
Matches are distributed among these distances:
875 3 0.00
876 451 0.21
877 52 0.02
878 106 0.05
879 7 0.00
880 9 0.00
882 2 0.00
887 141 0.07
888 157 0.07
889 1 0.00
890 1 0.00
891 5 0.00
892 1 0.00
893 7 0.00
894 1 0.00
895 250 0.12
896 209 0.10
897 6 0.00
898 9 0.00
899 324 0.15
900 205 0.10
901 2 0.00
902 2 0.00
903 5 0.00
904 173 0.08
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (897 bp):
GGGGGGTGGTGCACATGATATACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTAG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCATGTTTGG
GGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATTGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCTGCCCGCTC
GCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCATACCAGACCGA
GGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCC
CGCCCCTCTGCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATAGGATGGACCGAGGGTTGCGACAGC
ACATGCTGGGCTCGGCCATGTGCTGGTGCTGTATTTTTCTTCACCGGGGTACCATCGTCGGAGCA
TCGCCGGAGAACCCGACTGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCA
Found at i:18056355 original size:26 final size:26
Alignment explanation
Indices: 18056319--18056371 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18056309 GTTGGCATAG
18056319 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18056345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18056371 G
1 G
18056372 ATCACACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18058035 original size:902 final size:899
Alignment explanation
Indices: 18056289--18060671 Score: 6182
Period size: 902 Copynumber: 4.9 Consensus size: 899
18056279 TGCCCGTCCG
* * * *
18056289 CCCGCTCGCTCATTTTGTCGGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCATTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
18056354 GTTCATTCCCAGTCTAAGATCACACCAGA-TCAAGGGTTGCGGCAGCACATGCTGGGCTC-AGGC
66 GTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCACATGCTGGGCTCGA-GC
* *
18056417 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA---TC---G---C--CGGAGAACCTGAC
129 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
* * * * * *
18056471 CGGCGACATAGGGGTTTCGCCGATCGGGGGGGTCGGGGGGGTGTGCGCAC-CGATGTGCGATGGG
194 CGACGACATTGGGGTTCCGACGATCGGGGGGG-C-CGGGGGTGTGCGCACATGATGTGCGATGGG
* *
18056535 TGCTGGTATTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
257 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
18056600 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
322 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
18056665 CTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTCCATGC
387 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
* * *
18056730 CAA-AAAACATACAAGGATCACGTCTATCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTA
452 CAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * *
18056794 ACAAATCTCGAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
516 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
18056859 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCA
581 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
18056924 TGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCC
646 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CTATCGATCCACGGCTTGCGCATCCC
* * *
18056989 GTCTCTCTGGTCGAAGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGC
710 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * *
18057054 ATACGGAGTTCATTCATAGTCTAAGATC-GTATCAGACCGAGGGTTGCGGGAGCAGGATCGGCAG
774 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCAGACCGAGGGTTACGGTAGCAGGATCGGCAG
* * *
18057118 CACGCAGAGGGGGACCCGACCGATCCTTGACTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCA
838 CACACAGA-GGGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * * *
18057181 CCCGCACGCTCATTTCGTTGGTTGGCTTAGACATACGGAGTTCATTCCTAGTCTAAGCATATGGA
1 CCCGCACGCTCATTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
18057246 GTTCATTCCCA-TGCTAAGATCAGACC-GAACTGAGGGTTGCGGCAGTAGATGCTGGGCTCGAGT
66 GTTCATTCCCAGT-CTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGC
* * * *
18057309 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGATCATCGCCGGAGAACCTGAC
129 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
* * * * *
18057374 CGACGGCCTTGGGGTTCCGACGTTCGGGGGGGCCGGGGGTGTGTGCACATGGTGTGCGATGGGTG
194 CGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
18057439 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
259 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
18057504 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
324 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
18057569 TTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
389 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
*
18057634 ACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
454 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* ** * *
18057699 AATCTCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTTGTCTTGCCATGAAA
519 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
18057764 CTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
584 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * * *
18057829 AGAAATATGAAGATGTGCGTAAACCAACCTACCACTCTATCGATCCACGGCTTACGGATCCCATC
649 AGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
18057894 TTTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCTTCGCTCATTTCGTGGGTTGGCTTAGGCATA
713 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCC-CCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
18057959 CGGAGTTCATTCCTAGTCTAAGATTAGATCAGACCGAGAGTTACGGCAGCAAGATCGACAGCACG
777 CGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACA
* * * * * *
18058024 TAGAAGGGGACCCGATCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGACTAAGCA
842 CAG-AGGGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * *
18058083 CCCGCACGCTCATTTTATTGGTTAACTT-GGCATACGTAGTTCATTCCCAGTCTAAGCATACAGA
1 CCCGCACGCTCATTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
18058147 GTTCATTTCCAGTATAAG-TCAGACTAGACTGAGGGTTGCGGTAGCACATGCTGGGCACGGGCAT
66 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
18058211 GTGCTGGTGCCGCA-TTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
131 GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * * * * * *
18058275 ACGGCATTGGGGTTTCGACAATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGTGATAGGTGC
196 ACGACATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
18058340 TAGTACTTCGCCCTTATATTGG-CCCCTCTCCCTCATCAAACCTCGAGAACTCACGCCCCCTTAA
260 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
18058404 AGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT--GG------
325 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * *
18058461 -------ATGGTCATAAAATCTTGTACACTTCGATTTTTTAGTTGAATTTTTTTGAGCATGCCAA
390 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCC--
* * *
18058519 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTTCGAAAAAATTTTAAA
453 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *** * *
18058584 AAATCTCAAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCTTGAA
518 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
18058649 AGTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACG
583 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
18058714 CAGAAATATGAATATGTGCCTAAATCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGT
648 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACC-TATCGATCCACGGCTTGCGCATCCCGT
* * *
18058779 CTCTCTGGCCGACTTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCTGTTGGCTCAGGCAT
712 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
18058844 ACGGTGTTCATTCCCCA-TCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATCGGCAGCA
776 ACGGAGTTCATT-CCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCA
* * * * * *
18058908 CACAGAGTGGGACCC-AGCCAATCCCCGACTTACGCATCCTGCCCCTCTGGCCGGCTGAACG
840 CACAGAG-GGGACCCGA-CCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * * *
18058969 CCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCATTCTAAGCATACGGA
1 CCCGCACGCTCATTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
18059034 GTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTACGGTAGCACATGTTGGGCTC-AGGC
66 GTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GC
* * *
18059097 ATGTTCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGAC
129 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
18059162 CGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGCGCACATGATGTGCGATGGGTG
194 CGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
18059226 CTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAATCACACCCCCTTA
259 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
18059291 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
324 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
18059356 TTTTTCCAATGGTCACAAAATCTTGTACGCTTTGAGTTTTTAGCTGAATTGTTTTATGCATGCCA
389 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
* * *
18059421 ACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAATTCCTTCCAAAAAAATTTTAAAA
454 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * *
18059486 AATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAA
519 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
18059551 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGC
584 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
18059616 AGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTC
649 AGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
18059681 TCTCTGGCCAACGTAGTGCTCGCCCGCCCG---CCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
713 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
18059743 GGAGTTAATTCCCAGTCTAAGATCAGA-CTGGATCGAGGGTTGCAGTAGCAGGATCGGCAGCACA
778 GGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTACGGTAGCAGGATCGGCAGCACA
* * * * * * *
18059807 CAGAGGGTGACCCGATCGATCCTCGGCTTGCCCATCCCGTCCCTCTGGTCGGTTGAGCG
842 CAGAGGG-GACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* *
18059866 CCCGTACGCTCATTTTGTTGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATC-G
1 CCCGCACGCTCATTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGG
* * * * *
18059930 AGTTCATTCTCAGTCTAAGATCGGACCAGACAGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
65 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
* * *
18059995 TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATAGTCGGAGAACCTGACC
130 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
*
18060060 GACGACATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTG
195 GACGACATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGTGTGCGCACATGATGTGCGATGGGTG
18060125 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
259 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
18060190 AAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
324 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
18060255 TTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATT-TTTTGTGCATGCCA
389 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
* * *
18060318 ATAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACGCCTTCCGAAAAAATTTTAAAA
454 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
18060383 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
519 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
18060448 CTTCACGTGAAGGCTTAAAGGACCATTGTAGGAATTTACAAGCCATTAAAATGGCATTGGCATGC
584 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
18060513 AGAAATATGAAGATATGGCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTC
649 AGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTC
* * * **
18060578 TCTCTAGCCGGCGTAGTGTCCGTCCGCCCGCCCGCCCGTCCGCTCGTTTCGTTTGTTGGCTTAGG
713 TCTCTGGCCGACGTAGTG--C--CCGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTAGG
18060643 CATACGGAGTTCATTCCCAGTCTAAGATC
773 CATACGGAGTTCATTCCCAGTCTAAGATC
18060672 CGACCGGACT
Statistics
Matches: 3101, Mismatches: 320, Indels: 127
0.87 0.09 0.04
Matches are distributed among these distances:
884 50 0.02
885 4 0.00
886 406 0.13
887 96 0.03
888 146 0.05
889 75 0.02
890 2 0.00
891 2 0.00
892 144 0.05
893 2 0.00
895 1 0.00
896 8 0.00
897 596 0.19
898 11 0.00
899 359 0.12
900 99 0.03
901 333 0.11
902 624 0.20
903 92 0.03
905 51 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
CCCGCACGCTCATTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
ACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACACAGA
GGGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
Found at i:18058149 original size:26 final size:26
Alignment explanation
Indices: 18058112--18058164 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18058102 GGTTAACTTG
*
18058112 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGTAGTTCATTCCCAGTATAA
*
18058138 GCATACAG-AGTTCATTTCCAGTATAA
1 GCATAC-GTAGTTCATTCCCAGTATAA
18058164 G
1 G
18058165 TCAGACTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGTAGTTCATTCCCAGTATAA
Found at i:18059035 original size:26 final size:26
Alignment explanation
Indices: 18058999--18059051 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18058989 GTTGACTTAG
*
18058999 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
18059025 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18059051 G
1 G
18059052 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18061541 original size:26 final size:26
Alignment explanation
Indices: 18061505--18061557 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18061495 GTTGACTTAG
*
18061505 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18061531 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18061557 G
1 G
18061558 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18062963 original size:716 final size:703
Alignment explanation
Indices: 18061539--18063712 Score: 3035
Period size: 705 Copynumber: 3.1 Consensus size: 703
18061529 AAGCATATGG
* * *
18061539 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCA-AGCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
** * *
18061604 TGTGCTGGGGCCGCATTTTTCATCGCCAAGGCACCATCATCGGAGCATCACTGGAGAACCTGACC
65 TGTGCTGGGGCCATATTTTTCTTCGCCGAGGCACCATCA-C-GAGCAT--CTGGAGAACCTGACC
** * * *
18061669 GGCGGTGTTGGGGTTCCGACGATCGGGG-GGGCCGGCGT-TGCGCACATGATGTGTGATGGGTGC
126 GGCGGCATTGGGGTTCCGACAATCGGGGCGGG--GGGGTGTGCGCACATGATGT-AGATGGGTGC
* *
18061732 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACACCTCAAGAACTCACACCCCCTTAA
188 TGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
18061797 AGAGCATTTCAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAAGGACACTT
252 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTT
* * *
18061862 TTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGTTGAATTTTTTTGTGCATGCCAA
317 TTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
18061927 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTGTCCAAAAAAATTTTAAAAA
382 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTCTCCAAAAAAATTTTAAAAA
*
18061992 ATCCCGAACCGTAAAAAGTTTTGAAAATCATAAAAAATAGAAAACGAGTCGTCTTGGCATGCAAC
447 ATCCCGAACCGTAAAAAGTTTTGAAAATCATAAAAAATAGAAAACGAGTCGTCTTGGCATGAAAC
* *
18062057 TTCACGAGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
512 TTCATGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * *
18062122 GAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCCCATCCCGTCT
577 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
18062187 CTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCATAGGCATACGG
642 CTCTGGC-GGCGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
* * *
18062250 AGTTCATTCCCAGTCTAAGATCGAAGCAAACTGAGGGTTGCGGTAGCACATACTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATC-AAGCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
18062315 TGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCACCAGAGCATCGTTGGAGAACTTGACC
65 TGTGCTGGGGCCATATTTTTCTTCGCCGAGGCACCATCA-C-GAGCATC--TGGAGAACCTGACC
* * *
18062380 GGTGGCATTGGGGTTCCGATAATCAAAGGGGTCGGGGGGGTGTGCGCACATGATGTACGATGGTT
126 GGCGGCATTGGGGTTCCGACAATC---GGGG-CGGGGGGGTGTGCGCACATGATGTA-GATGGGT
* *
18062445 GCTAGTACTTGGCCCTTATATTGGTCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTT
186 GCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
18062510 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAGTAGGGACAC
250 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC
* * *
18062575 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTATGGCTGAATTTTTTTGTGCATGCC
315 TTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** * *
18062640 ACCAAAAATACAAGGATCACGTCTACCAAGTTTGGATTCCAAAACTCTTTCCGAAAAAATTTTAA
380 AACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCTCTCCAAAAAAATTTTAA
* * ** * * * *
18062705 AAAATCCCGAACTGCAAAAAGTTTCAAAAATAATGAAAATTAGAAAGCGAGTCGTCTT-GCTATG
444 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCATAAAAAATAGAAAACGAGTCGTCTTGGC-ATG
* *
18062769 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCA
508 AAACTTCATGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
18062834 TGCAAAAATATGAAGATATGCTTAAACCGACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
573 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
18062899 GTCTCTCTGGTCGACGTAGTGCCCGCTCGCCCACCCGCTCATTTCGTCAGTTGGCTTAGGCATAC
638 GTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
18062964 GA
702 GA
* * * *
18062966 AGTTCATTCCCAATCTAAGATC-AGACTGGATTG-GGCGTTACGGCAGCACATGCTGGGCTCGGG
1 AGTTCATTCCCAGTCTAAGATCAAG-C-AGACTGAGG-GTTGCGGCAGCACATGCTGGGCTCGGG
*
18063029 CATGTGCTGGGGCCACT-TTTTTCTTCGTCGAGGCACCAT--C--G---CTGGAGAACCTGACCG
63 CATGTGCTGGGGCCA-TATTTTTCTTCGCCGAGGCACCATCACGAGCATCTGGAGAACCTGACCG
*
18063086 GCGACATTGGGGTTCCGACAATCGGGGGCGCCGGGGGGGGTGTGCGCACATGATGTGAGATGGGT
127 GCGGCATTGGGGTTCCGACAATC--GGG-G-C-GGGGGGGTGTGCGCACATGATGT-AGATGGGT
*
18063151 GCTGGTACTTGGCCCTTATATTGG-CCCTCATCCCTCATCAAACCTCGAGAACTCACACCGCCTT
186 GCTGGTACTTGGCCCTTATATTGGCCCCT-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
18063215 AAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
250 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC
18063280 TTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTTGTGCATGC
315 TTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAA-TTTTTTTGTGCATGC
*
18063345 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAAAATTTTAA
379 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTCTCCAAAAAAATTTTAA
** *
18063410 AAAATCCTTAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGGCATGA
444 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCATAAAAAATAGAAAACGAGTCGTCTTGGCATGA
* * *
18063475 AACTTCATGGGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGCAT
509 AACTTCATGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
18063540 GCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGACTTGTGCATCCCG
574 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
18063605 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTACGCATACG
639 TCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACG
18063670 A
703 A
* * *
18063671 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG
1 AGTTCATTCCCAGTCTAAGATCA-AGCAGACTGAGGGTTGCG
18063713 ACTGCAAGAT
Statistics
Matches: 1295, Mismatches: 142, Indels: 58
0.87 0.09 0.04
Matches are distributed among these distances:
704 7 0.01
705 459 0.35
706 107 0.08
707 3 0.00
709 1 0.00
710 1 0.00
711 128 0.10
712 1 0.00
713 1 0.00
714 10 0.01
715 237 0.18
716 338 0.26
717 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (703 bp):
AGTTCATTCCCAGTCTAAGATCAAGCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGGGCCATATTTTTCTTCGCCGAGGCACCATCACGAGCATCTGGAGAACCTGACCGGCGG
CATTGGGGTTCCGACAATCGGGGCGGGGGGGTGTGCGCACATGATGTAGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTCTCCAAAAAAATTTTAAAAAATCCCGAAC
CGTAAAAAGTTTTGAAAATCATAAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCATGAGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGG
CGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
Found at i:18064735 original size:26 final size:26
Alignment explanation
Indices: 18064699--18064751 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18064689 GTTGGCTTAG
*
18064699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18064725 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18064751 G
1 G
18064752 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18065345 original size:892 final size:886
Alignment explanation
Indices: 18063829--18066500 Score: 3724
Period size: 885 Copynumber: 3.0 Consensus size: 886
18063819 TAGGCATATG
** * * * *
18063829 GAGTTCATTCCCAGTCTAAGAGCGGACCGGACCGAGGGTTGTAGCAGCACATGCTTGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGC
18063894 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCAGAAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC---GC--CG--G-AGAACCTGAC
* * * * *
18063959 CGACGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTATGATGGG
120 CGACAGCATTGGGGTTCCGGCGATCGGGGGAG-CCGGGGGGTGTGCGCACATGATGT-CGATGGG
* * * * *
18064024 TGCTGGTACTTTGCCCTTATATTGACCCCCTATCCCTCATCAAACCTGGCGAAGTCACACCCCCT
183 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
18064089 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCAATTAAAGTGTCTAAAATAGGGACA
248 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
* * *
18064154 CTTTTTTCAACTGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGC
313 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
18064219 CAACAAAAATACAAGGATCATGTCTACCAAGTTTATGGCCAAAACTCCTTCCGAAAAAATATTAA
378 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
18064284 AAAATCTTGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTGCCATGA
443 AAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
* * *
18064349 AACTTTACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACT--GAC
508 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGAC
*
18064412 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG-TTGTGCATCC
573 AT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
18064476 CGTCTCTTTGGCCAGCGTAGTGCCCACCCATCCACCTGCCCGCTCGTTTCGTCGTTTGCCTTAGG
636 CGTCTCTTTGGCCAGCGTAGTGCCCACCC--CC-CC-GCCCGCTCGTTTCGTCGTTTG-CTTAGG
* * * * * * * * **
18064541 CATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAACAAGGGTTGCGGTAGCAAGATTGACAA
696 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGTAGGATCG-GTA
*
18064606 G-ATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGC
760 GCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
18064670 CCGTACACTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
825 CCGTACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
*
18064732 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGCTGCAGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGC
* * *
18064797 ATGTGCTGGTGTCGTATTTTTCTTCACCGAGGCACCATCGCCGGAGAACCTGACCGACAGCATTG
66 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGACAGCATTG
* * *
18064862 GGGTTCCGACGATCGGGGGAGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTG
131 GGGTTCCGGCGATCGGGGGAGCCGGGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACTTG
* * *
18064927 GCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCACTTAAAGAGCATTT
195 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
18064992 GAGATTTTACAGGTTTGCTGCCAGTAGTAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
260 GAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
18065057 GGTCACAAAGTCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGGCAAAAAAAAATA
325 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-GCCAAAAAAAATA
* * *
18065122 CAAGGATCACGTTTACCTAGTTTGGGGCCAAAA-TCCCTTCCGAAAAAATTTTAAAAAATCTTGA
389 CAAGGATCACGTCTACCAAGTTTAGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCTTGA
*
18065186 ACCGCAAAAAGCTTT-AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
453 ACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
* *
18065250 TGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGGACATAGAACTA
517 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGACATAGAAATA
* ** *
18065315 TGAAGATGTACCTAAACCCACCTACCACCCTATCGATGTACGGCTTGCGCATCCCGTCTCTCTGG
582 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGG
* * * * *
18065380 CCGATGC--AGTG----CCCGCCCGTCCGCTCGTTTCGTCGGTTGGCATAGGCATACGGAATTCA
647 CC-A-GCGTAGTGCCCACCCCCCCGCCCGCTCGTTTCGTC-GTTTGCTTAGGCATACGGAGTTCA
* * * * *
18065439 TTGCCAGTCTAAGATGGGACCAGACCGATGGTTGTGGTAGTAGGATCGGTAGCACGTAGAGGGGG
709 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGTAGGATCGGTAGCATGCAGAGGGGG
** *
18065504 ACCCGACCGATCCCCGGCTTATGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTT
774 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTT
*
18065569 CATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
839 CATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* *
18065617 GAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCAATAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGC
* * *
18065682 ATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTTACCGGCAGCATTG
66 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGACAGCATTG
* *
18065747 GGGTTCCGGCGATCGAGGGGA-TCGGGGGGTGTGCGCACATGATGTCTGATAGGTGCTGGTACTT
131 GGGTTCCGGCGATCG-GGGGAGCCGGGGGGTGTGCGCACATGATGTC-GATGGGTGCTGGTACTT
* *
18065811 GGCCCTTATTTTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCATT
194 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
18065876 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACAC-TTTTTCAAA
259 TGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
18065940 TGGTCACAAAATCTTGTTACACTTTGAG-TTTTAGCT-AAATTTTTTGTGCATGCCAAAAAAAAT
324 TGGTCACAAAATCTTG-TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
*
18066003 ACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
388 ACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGA
* * * *
18066068 ACCGTAAAAAGTTTCAAAAATCGTGAAGAATAGAAAACAAGTCATCTTGCCATGAAACTTCACAT
453 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
** * **
18066133 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCATTGGCATGTAGAAATAT
518 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGACATAGAAATAT
* *
18066198 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCT-TTCTAG
583 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTT-TGG
* * * *
18066262 CCGGCGTAGTGCCCACCCGCCCGCCCGCCAGCTCATTTCGTCGGTTAGCTTAGGCATACGGAGTT
647 CCAGCGTAGTGCCCA--C-CCC-CCCGCCCGCTCGTTTCGTC-GTTTGCTTAGGCATACGGAGTT
* *
18066327 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGGATCGGTAGCACT-CAGATG
707 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGTAGGATCGGTAGCA-TGCAGAGG
* * * * * **
18066391 GGGACCCGACCGATCTCTGGCATGCGCATCCCGCCCCTCTGGTCGGCTGAGCGACCACACGCTCG
771 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCG
* * * * *
18066456 TTTCATAGGTTGACTTAGGCATACGGACTTCATTTCCAATCTAAG
836 TTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
18066501 ATCAGACCGG
Statistics
Matches: 1578, Mismatches: 164, Indels: 67
0.87 0.09 0.04
Matches are distributed among these distances:
880 2 0.00
881 4 0.00
882 246 0.16
883 15 0.01
884 35 0.02
885 479 0.30
886 11 0.01
887 1 0.00
888 1 0.00
889 5 0.00
890 187 0.12
891 203 0.13
892 254 0.16
893 29 0.02
894 6 0.00
895 4 0.00
897 2 0.00
900 2 0.00
903 92 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGACAGCATTG
GGGTTCCGGCGATCGGGGGAGCCGGGGGGTGTGCGCACATGATGTCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
AGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGACATAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCAG
CGTAGTGCCCACCCCCCCGCCCGCTCGTTTCGTCGTTTGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCAGACCGAGGGTTGTGGTAGTAGGATCGGTAGCATGCAGAGGGGGACCCGAC
CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATTGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
Found at i:18065615 original size:26 final size:26
Alignment explanation
Indices: 18065584--18065636 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18065574 GTTGGCTTAG
18065584 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18065610 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18065636 G
1 G
18065637 ATTGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18068576 original size:870 final size:868
Alignment explanation
Indices: 18066630--18072221 Score: 6974
Period size: 870 Copynumber: 6.4 Consensus size: 868
18066620 ACTGGCGGCA
* * *
18066630 TTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCCCGTC
1 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
** ** * * *
18066695 TACCAAGTTT-GAACCAAAACTCCTTCTGAAAACATTTTAAAAAATCTCAAACCGTAAAAAGTTT
66 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * *
18066759 CAAAAATCCTGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGTCTTAAGGGA
131 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* ** *
18066824 CCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAATATGTGCCTAA
196 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAA
* * * *
18066889 ACCCACCTACTACCCTATCGATCCACGGCTTACGCATCCCTTCTCTCTGGCCGGCGTAGTGCCCG
261 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---CG
* * *
18066954 GCCGCCCGCCCGCTCGTTTCGTCGGATGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
323 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
18067019 GACCGGA-TCGAGGGTTGCGGTAGCAGGATTGGCAGC-CGCAGAGGGGGACCC-AGTCAATCCCC
388 GACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCC
* * * * * *
18067081 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACACTCATTTCGTTGGTTGGCTTAG
451 AGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
18067146 GCATA-TGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTGC-AGTAGCACATGCTGG
516 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGA-TAGCACATGCTGG
* *
18067209 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT------G----GTCGGAGA
580 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCGTCGGAGA
* * * *
18067264 ACCTGACCGGCGGCATTAGGGTTTCGACGATCGAGGGAGCCGGGGGGTGTGCACACATAATGTGC
645 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCACACATGATGTGC
*
18067329 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
709 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
18067394 CCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
774 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
* *
18067459 AGGACACTTTTTTCAAATGGTCACAAAGTC
839 GGGACACTTTTTTCAAATGGTCACAAAATC
* * *
18067489 TTGTACACTTCAAGTTTTTAGCTGAAGTTTTTTGTGCATGGCAA-AACAAATACAAGGATCACGT
1 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA-AAATACAAGGATCACGT
* * * *
18067553 CTACCTAGTTTGGGTCCAAAA-TCCCTTCCAAAAAAATTTTAAAAAATCCTGAACTGTAAAAAGC
65 CTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-
*
18067617 TTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
128 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
18067681 GGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGGACATAGAAATATGAAGATGTACC
193 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCC
** *
18067746 TAAACCCACCTACCACCCTATCGATGTACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGT-G
258 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCG
* * * * **
18067810 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCATAGGCATACGAAATTCATTGCCAGTCTAAGATGG
323 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
** * *
18067875 GACCAGACTGACAGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAG
388 GACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAG
* * * *
18067940 CTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGC
453 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
18068005 ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGATAGCACATGCTGGGCT
518 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGATAGCACATGCTGGGCT
*
18068070 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
583 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGTCGGAGAAC
* * *
18068135 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCAGATGATGTGTGA
647 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCACACATGATGTGCGA
* **
18068200 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACACCTTGAGAACTCACACC
711 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
18068265 CCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGGG
776 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
18068330 GACACTTTTTTTGAAATGGTCACAAAATA
841 GACAC-TTTTTTCAAATGGTCACAAAATC
* * *
18068359 TTGTACACTTCAAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
1 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * **
18068424 TAGCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
66 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
*
18068489 CAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
131 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
18068554 TCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTGA
196 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAA
* * *
18068619 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTGGCTGGCGTAGTGCTCG
261 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-TCG
* *
18068684 CCCAACCGCCCGCCCGCTTGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAG
323 --C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** * *
18068749 ATCAGACC-GCATTGAGGGTTACGGTAGCAGGATCGATAGCACACAGAAGGGGACCCGACCGAT-
384 ATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * * * *
18068812 CCCAGGCTGGCGCATCCCACCCCTCTGGCTGGCTAAGCGCCAGCACGCTCGTTTTGTGGGTTGAC
448 CCCA-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
18068877 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACC
512 TTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A--T-C-G-----GATCGGACC
* * * * * ** **
18068942 GGACCGAAGGTTGCGGTAGTACATGCTAGGCTCGAGAATGTGCTGGTGCCATATTTTTCTTCACC
556 -GA--G--GGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * **
18069007 GGGGGACCATCACCGGAGCATCGTAGGAGAACCTGACTAGCGGCATTGGGGTTCCGACGATCGGG
616 GGGGCACCATC-CCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
** *
18069072 GGAGCCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCC
680 GG-G-CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
** *
18069137 CCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTT
743 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
18069202 GCTACCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATA
808 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
18069263 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
1 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* ** *
18069328 TACCAAGTTTCGACCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
66 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * *
18069393 CAAAAATCATGAAAAATAAAAAAGGAATCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
131 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
18069458 TCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCACATAGAAATATGAAGATGTGCCTAA
196 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAA
* * *
18069523 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTGGTCGGCGTAGT-GCCC
261 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCC
* * * *
18069587 GTCCGACCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCAGAC
326 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * * * * *
18069652 CAGACCAAGGGTTACAGTAGCAGGATCGGCAGCACGCAGAGGGGCACCCGATCGAT-CCCAGGCT
391 CAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCA-GCT
* * * * *
18069716 TGCGCATCCCACCCCTCTGGTCGGCTAAGCGCCTGCACGTTCGTTTCGTGGGTTGACTTAGGCAT
455 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
18069781 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGACGGTTGC-ATCAGCACATGCTGGGCCC
520 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGAT-AGCACATGCTGGGCTC
* * ** *
18069845 GGGCATGTGCTGGTGTCGTATTTTTCTTCGTTAGGGCACCATCACCGGAGCAACG-CTGGAGAAC
584 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGTC-GGAGAAC
* * * * * *
18069909 CTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGAACCGGGGGGGTGTACGCACATGATGTGCG
647 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCC-GGGGGGTGTGCACACATGATGTGCG
18069974 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
710 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * * *
18070039 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCAGTAAAGTGTCTAAAATGG
775 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
18070104 GGACACTTTTTTCAAATGGTCACAAAATC
840 GGACACTTTTTTCAAATGGTCACAAAATC
* * * * * *
18070133 TTGTACACTTTGAGTTTTTAGCAGAATTTTTTTGTACATGCCAAAAAAAAAGACAAGGATCACAT
1 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGT
* * * * **
18070198 CTACCAAGTTTTGGG-AAAAAATACCTTCCCAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGT
65 CTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
*
18070262 TTCAAAAATCATGAAAAATAGAAAACGAGTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
129 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
**
18070327 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
194 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
* * *
18070392 AAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT-CCGTCTCTCTGGCTGATGTAGTGCC
259 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---
*
18070456 CGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
321 CGCCCGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * *
18070521 AGATTGGACCAGACTGAGGGTTGCGACAGCAAGAT-GGCCAGCACGCAGAGGGGGACCCGACCGA
382 AGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGG-CAGCACGCAGAGGGGGACCCGACCGA
* * * *
18070585 TCCCCGGCTTGCACATCCCGCCCCTCTGGCCGACTGATCGCCCGCACGCTCGTTTCGTGGGTTGA
446 TCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
*
18070650 CTTAGGCATAGGGAGTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATG
511 C-T-----TA--G-G-CA-T---A--C---G------GAGTTCATTCCCAGTCTAAGATCGGATC
* *
18070715 GGACCGAGGGTTGCGATAGCAGATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
551 GGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * **
18070780 GGGGCACCAT-------CA---TCGGAGAACCTAACAGGCGGCATTGGGGTTCCGGTGATCGGGG
616 GGGGCACCATCCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * *
18070835 GGCCCGGGGGGGTGTGCACACATGATTTGCTATGGGTGCTGGTACTTGGCCCTTA-ATTGGACCC
681 GG-CC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
**
18070899 CTATCCCTCATCAAACCTTGAGAACTCAC-CCCCACTTAAAGAGCATTTGAGATTTTACAGGTTT
744 CTATCCCTCATCAAACCTCAAGAACTCACACCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTT
*
18070963 GCTATCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AA-GGTCACAAAATC
808 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
18071022 TTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC-AGGTATCATGT
1 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG-ATCACGT
* * * *
18071086 CTACCACGTTTGGGGCCAAAACTCCCTT-CGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGT
65 CTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
*
18071150 TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
129 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
18071215 GATCATTGTATGAATTTACAAGCCATAAAAAT-GCATTGGCACATAGAAATATGACGATTTGCCT
194 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
* * * * * *
18071279 AAACGCACCTACCACCCTATCGATGCACGGCTTACGCACCCCGTCTCTTTGGCC-ACCATAGT--
259 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTCG
* * * * *
18071341 ---GCTCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTTTAAGATC-
323 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
18071402 G-CACAGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACACGGAGGGGGACCTGACCGATCCCC
388 GAC-CA-GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* *
18071466 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAG
451 AGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
18071531 GCATCCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCAAAGTCTAAGATCGGATCAGAC
516 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-TC---G-----GATC-G----GAC
* * * *
18071596 CGAGGGTTGCGACAGCACATGCTGGGCTCCGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGTGG
555 CGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** * * * * * * *
18071661 CACCATCGCCGGAGCATCACCGGAGAACCTTATCGACGGCATTGAGGTTTCGACAATTGGGGGGG
620 CACCATC-CCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGG
18071726 CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
683 CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
18071791 CCTTCATCAAACCTCAAGAACTCACACCCCCGTAAAGAGCATTTCAGATTTTACAGGTTTGCTGC
748 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
* * *
18071856 CAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCTAATGTTCACAAAATC
813 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
18071912 TTGTACACTAT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
1 TTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
*
18071976 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
65 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * * *
18072041 TCAAAAATCATGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACGTCAAGGCTTAGGGG
130 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* ** * *
18072106 AGCATTGTATGGGTTTACAAGGCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
195 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTA
* * *
18072171 AACCCACCTACCACCATATCGATCTACGGCTTGCGCATCCTGTCTCTCTGG
260 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
18072222 TTGGAGTAGT
Statistics
Matches: 4137, Mismatches: 435, Indels: 290
0.85 0.09 0.06
Matches are distributed among these distances:
851 14 0.00
853 1 0.00
856 85 0.02
857 88 0.02
858 97 0.02
859 67 0.02
860 215 0.05
861 3 0.00
863 1 0.00
864 2 0.00
865 2 0.00
866 2 0.00
867 2 0.00
868 8 0.00
869 192 0.05
870 640 0.15
871 231 0.06
872 4 0.00
873 2 0.00
874 12 0.00
875 10 0.00
876 154 0.04
877 81 0.02
878 329 0.08
879 4 0.00
880 6 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 5 0.00
885 2 0.00
886 1 0.00
887 118 0.03
888 303 0.07
889 77 0.02
890 217 0.05
891 183 0.04
892 87 0.02
893 2 0.00
894 3 0.00
895 2 0.00
896 189 0.05
897 2 0.00
898 1 0.00
899 9 0.00
900 3 0.00
901 1 0.00
902 2 0.00
903 88 0.02
904 430 0.10
905 154 0.04
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (868 bp):
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCC
GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTT
GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCGTCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATC
Found at i:18068917 original size:26 final size:26
Alignment explanation
Indices: 18068881--18068933 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18068871 GTTGACTTAG
18068881 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18068907 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18068933 G
1 G
18068934 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18071567 original size:26 final size:26
Alignment explanation
Indices: 18071531--18071583 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18071521 GTTGACTTAG
* **
18071531 GCATCCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCAAAGTCTAA
18071557 GCATACGGAGTTCATTCAAAGTCTAA
1 GCATACGGAGTTCATTCAAAGTCTAA
18071583 G
1 G
18071584 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCAAAGTCTAA
Found at i:18072114 original size:890 final size:889
Alignment explanation
Indices: 18069777--18072221 Score: 3341
Period size: 888 Copynumber: 2.7 Consensus size: 889
18069767 GTTGACTTAG
* * *
18069777 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGAACTGACGGTTGC-ATCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCGA-CAGCACATGCTG
* * * *
18069840 GGC-CCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTTAGGGCACCATCACCGGAGCAACGCTGG
64 GGCTCC-GGCATGTGCTGGTGTCGCATTTTTCTTCG-TCGGGCACCATC-CCGGAGCATC-CCGG
* * * * *
18069904 AGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGAACCGGGGGGGTGTACGCACATGAT
125 AGAACCTTAACGACGGCATTGGGGTTTCGGCGATCGGGGGGACCGGGGGGGTGTGCACACATGAT
18069969 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
18070034 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCAGTAAAGTGTCTAA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
18070099 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCAGAATTTTT
320 AATGGGGACACTTTTTTC-AATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCTGAATTTTT
* * * * * * *
18070164 TTGTACATGCCAAAAAAAAAGACAAGGATCACATCTACCAAGTTTTGGG-AAAAAATACCTTCCC
383 TTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCA
* ** *
18070228 AAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTG
447 AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
18070293 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
512 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
**
18070358 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
577 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CACGGC
* * ** * *
18070423 TT-GCACATCCGTCTCTCTGGCTGATGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGG
641 TTCGCAC-CCCGTCTCTCTGGCTCACATAGT-------CGCCCG-CCGCCTGCTCATTTCATCGG
* * *
18070487 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTGCGACAGCA
697 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGCACCAGACCGAGGGTTGCGACAGCA
*
18070552 AGATGGCCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCG
762 AGATGGCCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCG
* *
18070617 ACTGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTCATTCCCAGTCTAA
827 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCATTCCCAGTCTAA
* ** * *
18070680 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATGGGACCGAGGGTTGCGATAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
** *
18070745 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-------CAT--CGGAGAAC
66 CTCCGGCATGTGCTGGTGTCGCATTTTTCTTCGTC-GGGCACCATCCCGGAGCATCCCGGAGAAC
* * * * *
18070801 C-TAACAGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCCGGGGGGGTGTGCACACATGATTTGC
130 CTTAAC-GACGGCATTGGGGTTTCGGCGATCGGGGGGACCGGGGGGGTGTGCACACATGATGTGC
* * **
18070865 TATGGGTGCTGGTACTTGGCCCTTA-ATTGGACCCCTATCCCTCATCAAACCTTGAGAACTCAC-
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
**
18070928 CCCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCATTAAAGTGTCTGAAAT
259 CCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
18070993 GGGGACACTTTTTTCAA-GGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
323 GGGGACACTTTTTTCAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTGT
* * * * *
18071057 GCATGCCAACAAAAATAC-AGGTATCATGTCTACCACGTTTGGGGCCAAAACTCCCTT-CGAAAA
387 GCATGCCAAAAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAA
* *
18071120 AATTTTAAAAAAT-CTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
451 AATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
18071184 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAAT-G
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
18071248 CATTGGCACATAGAAATATGACGATTTGCCTAAACGCACCTACCACCCTATCGATGCACGGCTTA
580 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CACGGCTT-
* *
18071313 CGCACCCCGTCTCTTTGGC-CACCATAGT-GCTCG-C-CC-GCTCATTTCATCGGTTGGCTTAGG
643 CGCACCCCGTCTCTCTGGCTCA-CATAGTCGCCCGCCGCCTGCTCATTTCATCGGTTGGCTTAGG
* * * * *
18071373 CATACGGAGTTCATTCCTAGTTTAAGATCGCA-CAGGACCGAGGGTTGTGGCAGCAGGATCGG-T
707 CATACGGAGTTCATTCCTAGTCTAAGATCGCACCA-GACCGAGGGTTGCGACAGCAAGAT-GGCC
* * * *
18071436 AGCACACGGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
770 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCG
* *
18071501 CCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATCCGGAGTTCATTCCCAGTCTAA
835 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TCATTCCCAGTCTAA
**
18071557 GCATACGGAGTTCATTCAAAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
18071622 CTCCGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGTGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCCGGCATGTGCTGGTGTCGCATTTTTCTTCGTCG-GGCACCATC-CCGGAGCATC-CCGGAGA
* * * * * *
18071687 ACCTTATCGACGGCATTGAGGTTTCGACAATTGGGGGGGCC-GGGGGGTGTGCACACATGATGTG
128 ACCTTAACGACGGCATTGGGGTTTCGGCGATCGGGGGGACCGGGGGGGTGTGCACACATGATGTG
*
18071751 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
18071816 ACCCCCGTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
18071881 GGGGACACTTTTTTCTAATGTTCACAAAATCTTGTACACTATGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTC-AATGGTCACAAAATCTTGTACACT-TGAGTTTTTAGCTGAATTTTTTTG
18071946 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAA
386 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAA
* *
18072010 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTTGTCT
451 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * ** *
18072075 TGCCATGAAACTTCACGTCAAGGCTTAGGGGAGCATTGTATGGGTTTACAAGGCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
18072140 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCTACGGCTTGC
581 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-ACGGCTT-C
* *
18072205 GCATCCTGTCTCTCTGG
644 GCACCCCGTCTCTCTGG
18072222 TTGGAGTAGT
Statistics
Matches: 1364, Mismatches: 139, Indels: 90
0.86 0.09 0.06
Matches are distributed among these distances:
875 2 0.00
876 168 0.12
877 117 0.09
878 1 0.00
880 4 0.00
885 3 0.00
887 111 0.08
888 306 0.22
889 74 0.05
890 214 0.16
891 186 0.14
892 82 0.06
895 2 0.00
902 1 0.00
903 91 0.07
904 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCCGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGCACCATCCCGGAGCATCCCGGAGAACC
TTAACGACGGCATTGGGGTTTCGGCGATCGGGGGGACCGGGGGGGTGTGCACACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAATGGTCACAAAATCTTGTACACTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTT
TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCACGGCTTCGCACCCC
GTCTCTCTGGCTCACATAGTCGCCCGCCGCCTGCTCATTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCTAGTCTAAGATCGCACCAGACCGAGGGTTGCGACAGCAAGATGGCCAGCACACAGAG
GGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTCATTCCCAGTCTAA
Found at i:18072685 original size:491 final size:491
Alignment explanation
Indices: 18071751--18072710 Score: 1541
Period size: 491 Copynumber: 2.0 Consensus size: 491
18071741 ACATGATGTG
* * *
18071751 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCAC
1 CGATCGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
18071816 ACCCCCGTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAAT
66 ACCCCAGTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAAT
* *
18071881 GGGGACACTTTTTTCTAATGTTCACAAAATCTTGTACACTATGAGTTTTTAGCTGAATTTTTTTG
131 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTATGAGTTTTTAGCTGAATTTTTTTG
18071946 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
196 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** *
18072011 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTTGTCTT
261 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTT
** *
18072076 GCCATGAAACTTCACGTCAAGGCTTAGGGGAGCATTGTATGGGTTTACAAGGCATAAAAATGGCA
326 GCCATGAAACTTCACGTCAAGGCTTAGGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
18072141 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCTACGGCTTGCG
391 TTGGCACACAGAAATATGAAGATATGCCTAAACCCACCAACCACCATATCGATCCACGGCTTGCG
*
18072206 CATCCTGTCTCTCTGGTTGGAGTAGTGCCCGCCTGT
456 CATCCCGTCTCTCTGGTTGGAGTAGTGCCCGCCTGT
*
18072242 CGATCGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1 CGATCGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
18072307 ACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
66 ACCCCAGTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAAT
18072372 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTT
131 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAT-GAGTTTTTAGCTGAATTTTTTT
* * * * **
18072436 GTGCATGCCAACAAAAATACAAGGATCAGGTCTATCAGGTTTGTTGCCAAAA-TGCCTTCCAAAA
195 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAA
* * * **
18072500 AAATTTTAAAAAATCCCAAACTGTAAAAAGTTTTAAAAATCATGACAAATAGAAAATGAGTCGTC
259 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
* * *
18072565 TTGCCGTGAAACTTCACGTGAAGGCTTAGGGGA-CTATTGTATGAATTTACAAGCCATAAAAATT
324 TTGCCATGAAACTTCACGTCAAGGCTTAGGGGAGC-ATTGTATGAATTTACAAGCCATAAAAATG
*
18072629 GCATTGGCA-AGCAGAAATATGAAGATATGCCTAAACCCACCAACCACCCTATCGATCCACGGCT
388 GCATTGGCACA-CAGAAATATGAAGATATGCCTAAACCCACCAACCACCATATCGATCCACGGCT
18072693 TGCGCATCCCGTCTCTCT
452 TGCGCATCCCGTCTCTCT
18072711 AGCCAGAGTA
Statistics
Matches: 430, Mismatches: 35, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
490 4 0.01
491 426 0.99
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (491 bp):
CGATCGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCAGTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTATGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTT
GCCATGAAACTTCACGTCAAGGCTTAGGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATATGCCTAAACCCACCAACCACCATATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGTTGGAGTAGTGCCCGCCTGT
Found at i:18073658 original size:701 final size:699
Alignment explanation
Indices: 18072254--18074813 Score: 3764
Period size: 701 Copynumber: 3.6 Consensus size: 699
18072244 ATCGGTGCTA
18072254 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAG
* *
18072319 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
65 AGCATTTGACATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
18072384 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
130 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTG-ATTTTTTTATGCATGCCAACA
* * * * *
18072449 AAAATACAAGGATCAGGTCTATCAGGTTTGTTG-CCAAAATGCCTTCCAAAAAAATTTTAAAAAA
194 AAAATACAAGGATCACGTCTACCAAGTTTG-GGACCAAAATTCCTTCCAAAAAAATTTTAAAAAA
* * * * * * *
18072513 TCCCAAACTGTAAAAAGTTTTAAAAATCATGACAAATAGAAAATGAGTCGTCTTGCCGTGAAACT
258 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
18072578 TCACGTGAAGGCTTAGGGGACTATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCAAGCAG
323 TCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAG
*
18072643 AAATATGAAGATATGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
388 AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
18072708 TCTAGCCAGAGTAGTGCCTGCCCGCTCGTTTAGTCGGTTGGCTTAGCAAACGGAGTTCATTCCCA
453 TCTAGCCAGAGTAGTGCCTGCCCGCTCGTTTAGTCGGTTGGCTTAGCATACGGAGTTCATTCCCA
*
18072773 GTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGTAGATGTTGGACTCAGGCATGTGCTGGTGCC
518 GTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGTAGATGCTGGACTCAGGCATGTGCTGGTGCC
* * * *
18072838 GTATTTTTCTTTGCCGGGGCACCGTCATCAGAGCATCATCAGAGAACCTGGTCGGCGGCATTGGC
583 GTATTTTTCTTTGTCGGGGCACCGTCGTCGGAGCATC-TCAGAGAA-CTGGTCGACGGCATTGGC
* *
18072903 GTTTCGGTGATCGGGGGGGCCGGAGGGGTGCGCACATGATGTGCGATAGGTGCCG
646 GTTTCGGAGATC-GGGGGGCCGGAGGGGTGCGCACATGATGTGCGATGGGTGCCG
* *
18072958 ATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGA
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGA
* *
18073023 GCTTTTGACATTTTAAAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
66 GCATTTGACATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
18073088 TCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGATTTTTTT-TTCTTGCCAACAAA
131 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTATGCATGCCAACAAA
18073152 AATACAAGGATCACGTCTACCAAGTTTGGGACCAAAATTCCTTCCAAAAAAATTTTAAAAAATCC
196 AATACAAGGATCACGTCTACCAAGTTTGGGACCAAAATTCCTTCCAAAAAAATTTTAAAAAATCC
* * *
18073217 TGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCA
261 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
18073282 CGTGAAGGCTTAGGGGACTATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCAAGCAGAAA
326 CGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAA
*
18073347 TATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCT
391 TATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
*
18073412 AGCCAGAGTAGTGCCTGCCCGCTCGTTTAGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAAT
456 AGCCAGAGTAGTGCCTGCCCGCTCGTTTAGTCGGTTGGCTTAG-CATACGGAGTTCATTCCCAGT
* * ****
18073477 CTAAGATTGGACTGGACCGAGGGTTGTGGCAGTAGATGCTGGACTCAGGCATGTGCTGGTGTTAC
520 CTAAGATTGGACCGGACCGAGGGTTGCGGCAGTAGATGCTGGACTCAGGCATGTGCTGGTGCCGT
* *
18073542 ATTTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGTCAGAGAATCTGGTCGACGGCATTGGTGT
585 ATTTTTCTTTGTCGGGGCACCGTCGTCGGAGCATC-TCAGAGAA-CTGGTCGACGGCATTGGCGT
*
18073607 TCCGGAGATCGGGGGGCCGGAGGGGTGCGCACATGATGTGCGATGGGTGCCG
648 TTCGGAGATCGGGGGGCCGGAGGGGTGCGCACATGATGTGCGATGGGTGCCG
*
18073659 GTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGA
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGA
*
18073724 GCTTTTGACATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
66 GCATTTGACATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
18073789 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTT-TTCTTGCCAACAAA
131 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTATGCATGCCAACAAA
*
18073853 AATACGAGGATCACGTCTACCAAGTTTGGGACCAAAATTCCTTCCAAAAAAATTTTAAAAAATCC
196 AATACAAGGATCACGTCTACCAAGTTTGGGACCAAAATTCCTTCCAAAAAAATTTTAAAAAATCC
* * * ** *
18073918 TGAACCGCTAAACGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
261 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
18073983 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCATGCAGAAA
326 CGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAA
* *
18074048 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGGATCCCGTCTCTCT
391 TATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
18074113 GGTC-GACGTAGTGCCCGCCCGCACGCCCGTTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTC
456 AGCCAGA-GTAGTGCCTG--C-C-CG--C--TCGTTTAGTCGGTTGGCTTA-GCATACGGAGTTC
* * * * * * *
18074177 ATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGC
511 ATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGTAGATGCTGGACTCAGGCATGTGC
* * * * * *
18074242 TGGTGCCGTATTTTTCTTTGTCGAGACACCATCGTCGGAG-AAC-C--TG-ACCGG-CGA---CA
576 TGGTGCCGTATTTTTCTTTGTCGGGGCACCGTCGTCGGAGCATCTCAGAGAACTGGTCGACGGCA
* * * * * *
18074298 TTGGGGTTTCAGCGATCGGGGGAGCCGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTG
641 TTGGCGTTTCGGAGATCGGGGG-GCCGGAGGG-GTGCGCACATGATGTGCGATGGGTGCCG
18074359 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GAGAACTCACACCCCCTTAAA
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACA-CCCCTTAAA
* * * * *
18074423 GAGCATTTAAGATTTTATAGGTTTGCTGCTAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTT
64 GAGCATTTGACATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * **
18074488 TCTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTATGCATGCCAAC
129 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-TTGATTTTTTTATGCATGCCAAC
* * * *
18074553 AAAAATACATGGATCACGTCTACCAAGTTTGGGGCCACAACTCCTTCCAAAAAAATTTTAAAAAA
193 AAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAATTCCTTCCAAAAAAATTTTAAAAAA
* * * *
18074618 TCCCGAACCACAAAAAGTTTCGAAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCTTGAAACT
258 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
18074683 TCACGTAAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CA
323 TCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCA
* * * *
18074747 AAAATATCAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTCT
387 GAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
18074812 CT
452 CT
18074814 TTGGTTGGTG
Statistics
Matches: 1702, Mismatches: 135, Indels: 39
0.91 0.07 0.02
Matches are distributed among these distances:
698 20 0.01
699 8 0.00
700 80 0.05
701 893 0.52
702 162 0.10
703 357 0.21
704 58 0.03
705 2 0.00
706 1 0.00
707 1 0.00
708 2 0.00
709 117 0.07
710 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (699 bp):
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGA
GCATTTGACATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTATGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGACCAAAATTCCTTCCAAAAAAATTTTAAAAAATCC
CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAA
TATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
AGCCAGAGTAGTGCCTGCCCGCTCGTTTAGTCGGTTGGCTTAGCATACGGAGTTCATTCCCAGTC
TAAGATTGGACCGGACCGAGGGTTGCGGCAGTAGATGCTGGACTCAGGCATGTGCTGGTGCCGTA
TTTTTCTTTGTCGGGGCACCGTCGTCGGAGCATCTCAGAGAACTGGTCGACGGCATTGGCGTTTC
GGAGATCGGGGGGCCGGAGGGGTGCGCACATGATGTGCGATGGGTGCCG
Found at i:18075060 original size:26 final size:26
Alignment explanation
Indices: 18075030--18075082 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18075020 GTTGACTTAG
18075030 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18075056 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18075082 G
1 G
18075083 ATAAAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18076698 original size:26 final size:26
Alignment explanation
Indices: 18076662--18076712 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18076652 TTGACTTAGG
*
18076662 CATACGGAGTTCTTTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
18076688 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
18076713 GATCGAACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:18077600 original size:26 final size:26
Alignment explanation
Indices: 18077563--18077615 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18077553 GTTGACTTAG
* *
18077563 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCACTCCCAGTCTAA
*
18077589 GCATATGAAGTTCACTCTCAGTCTAA
1 GCATATGAAGTTCACTCCCAGTCTAA
18077615 G
1 G
18077616 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCACTCCCAGTCTAA
Found at i:18078340 original size:31 final size:31
Alignment explanation
Indices: 18078302--18078360 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
18078292 ATGGAGTTCA
18078302 TTCCCAGTCTAAGATCAGACCGAATCGAAGG
1 TTCCCAGTCTAAGATCAGACCGAATCGAAGG
*
18078333 TTCCCAGTCTATGATCAGACCGAATCGA
1 TTCCCAGTCTAAGATCAGACCGAATCGA
18078361 GGGGGACCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (31 bp):
TTCCCAGTCTAAGATCAGACCGAATCGAAGG
Found at i:18078476 original size:26 final size:26
Alignment explanation
Indices: 18078446--18078498 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18078436 GTTGACTTAG
* *
18078446 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
18078472 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
18078498 G
1 G
18078499 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:18079373 original size:26 final size:26
Alignment explanation
Indices: 18079343--18079395 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18079333 GTTGACTTAG
*
18079343 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18079369 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18079395 G
1 G
18079396 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18080519 original size:26 final size:26
Alignment explanation
Indices: 18080479--18080530 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18080469 TACTTGGCCC
* * *
18080479 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCACAGTCTAA
18080505 GCATACGGAGATCATTCACAGTCTAA
1 GCATACGGAGATCATTCACAGTCTAA
18080531 AATCGAACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGATCATTCACAGTCTAA
Found at i:18080694 original size:26 final size:26
Alignment explanation
Indices: 18080664--18080716 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18080654 GTTGACTTAG
*
18080664 GCATACGAATTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
18080690 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
18080716 G
1 G
18080717 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:18081562 original size:26 final size:26
Alignment explanation
Indices: 18081533--18081583 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18081523 TGACTTAGGT
18081533 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
18081559 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
18081584 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:18084755 original size:898 final size:894
Alignment explanation
Indices: 18082276--18086923 Score: 6028
Period size: 898 Copynumber: 5.2 Consensus size: 894
18082266 GTTGGCTTAG
* * * *
18082276 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
18082341 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-ACTGGGGCACCATCGTTGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * ** * *
18082405 AACCTGACCGTCAGCATTGGGGTTTCAGCTTTCGAGGGGGCTCGGGGGAGTGTACACACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-AGGGGGCT-GGGGG-GTGTGCGCACATGATG
** *
18082470 TGCGATGGGTGCTGGTGGTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
18082535 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
18082600 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * *
18082665 TGCGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* *
18082730 AAATTTTAAAAAATCCCGAACCACAGAAAGTTTCCAAAAAAATCGTGAAAAATAGAAAACGAGTC
452 AAATTTTAAAAAATCCCGAA-CACAAAAAGTTT-C--AAAAATCATGAAAAATAGAAAACGAGTC
* * *
18082795 ATCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
18082860 TGGCATTGGCATGCAAAAATATGATGATATGCCTAAACCCACCTCCCACCCTATCGATCCACGGC
578 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * ** *
18082925 TTGCGTATCCTGTCTCTCTGGTCGACATAGTGCCCGCCCACCTGCACGCCCGCTCATTTTTTCGA
643 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCATCGG
* ** **
18082990 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGGATCGAGGGTTGCAGCGGCA
704 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAACCGGA-CGAGGGTTGTGGTAGCA
* * * * ** ** * *
18083055 TGATTGGTAGCTCGTAGAGGGGGACCCGGCCGATCATCGGCTTACGCATCCTGCCCCTCTGGTCG
767 GGATCGATAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCG
* ** ** * * *
18083120 GTTGAGCGCATGCACATTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
831 GCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *** *
18083184 GCATACTGAGTTCATTCCCAGTGTAAGATCGGATTAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
18083249 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGCCACCATCGCCAGAGCATCGCCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCAT---C---G--TCG---GAG
* * * * * * * *
18083313 CACCGTCAGAGAACCCGACTGGCGGTATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTGTGC
119 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-AGGGGG-CTGGGGGGTGTGC
18083378 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
182 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
18083443 TCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAA
247 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
18083508 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGC
312 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
* *
18083573 TGAATTTTTTT-TACATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACT
377 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
18083637 CCTTCCAAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCGAAAATCGTGAAAAATAGAAA
442 CCTTCCAAAAAAATTTTAAAAAATCCCGAA-CACAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
18083702 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCC
506 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* **
18083767 ATAAAAATGGCATTGCCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
571 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
18083832 CCGCGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGCCCGCTCGTTTCGT
636 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCAT
* * * * ***
18083897 CGGTTCGCTTAGGCATACCGAGTTCATTCCCAATCTAAGATCGAACCGGTTCGAGGGTTACAGTA
701 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGG-ACGAGGGTTGTGGTA
* * *
18083962 GTAGGATCGATAGCACGTAGAGTGGGACCCGATCGATCCCCGGCTTGCGCATCTCACCCCTCTGG
764 GCAGGATCGATAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC-CGCCCCTCTGG
* *
18084027 CCGGCTGAGCGCCCGCACGCTCATTTCATGGGTCGACTTAGCCATAC-GCAGTTCATTCCCAGTC
828 CCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTC
18084091 TAA
892 TAA
* * * * * *
18084094 GCATACGAAATTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
18084159 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
18084224 ACCTAACCGGCGGCATTGAGGTTCCGGCGATCAGGGGGCTGGGGGGTGTGCGCACATGATATGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCAGGGGGCTGGGGGGTGTGCGCACATGATGTGCG
*
18084289 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
18084354 CCCCTTAAAGAGCATTTTAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
18084419 GGATACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTGGCTGAATTTTTTTTTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* ** * * *
18084484 CACT-CCAAAAAAAATACAAGGATCACGTCTTGCAAGTTTGGGGCCAAAACGCCTTTCGAAAAAA
391 CA-TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* *
18084548 TTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATCGAAAACGAGTCATCTTG
455 TTTTAAAAAATCCCGAACA-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
18084613 CCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
18084678 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATTGATCCAAGGCTTACAC
584 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
18084743 ATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCACCCGCCTGCTCGTTTCATCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG----CCCGCCCGCTCGTTTCATCGGTTGGCT
* * * *
18084808 TAGGCATATGGAATTCATTCCCAGTCTAAGATCAGACAGGACTGAGGGTTGTGGCAGCAGGATCG
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGAC-GAGGGTTGTGGTAGCAGGATCG
* * * * *
18084873 ACAGCATGTAGAGGGGGACCC-AGTCGATCCCCGACTTGTGCATCC-CACCCATCTGGCCGGTTG
773 ATAGCACGTAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCGC-CCC-TCTGGCCGGCTG
* *
18084936 AGCACCCGCACGTTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
835 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * * * *
18084996 GCAAATGGAGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGCTGTGACAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
18085061 CTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCTGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
18085126 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGAGCTGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCAGGGG-GCT-GGGGGGTGTGCGCACATGATGTG
* *
18085191 CGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
18085256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
18085321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGATGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
18085386 TGCATGCCAACAAAAATACAAGGATAATGTCTATCAAGTTTCGGGCCAAAATTCCTT-CTAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * * *
18085450 ATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCTTGAAAGATAGAAAATGAGTCGTCTC
454 ATTTTAAAAAATCCCGAAC-ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * * *
18085515 ACCATGAAACGTCACGTGAAGGCTTAATGGACCTTTTTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
18085580 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
18085645 CATCCCATCTCTCTGGCCTG-CGTAGTGCCCGCCCACCCGTCCGCTCGTTTCGTTGGTTGACTTA
648 CATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* * * * * *
18085709 AGCATACAGAGTTCATTCCCAATCTTAGATCTGACCAGACCGA-GGTTGTGGTAGCAGGATCAGC
712 GGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGA-CGAGGGTTGTGGTAGCAGGATC-G-
* * * * *
18085773 A-A-CACATAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCTGCCCCTCTGGTCGGCTGAG
773 ATAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAG
* * *
18085836 CGCCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCTAA
837 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * ** * *
18085894 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTAAGGGTTGCGGCAGCAAATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
18085959 CTCGGGCATGTGCTGGTGCCGCATTTTTGTTCGTCAAGGCACCATCGTCGGAGCATCGCCCGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * *
18086024 ACCTGACCGGCGGCATTGAGGTTCCGATGATC-GTGGGGACCGGGGGGGGTGTACGCACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCAG-GGGG--C-TGGGGGGTGTGCGCACATGATG
* *
18086088 TGCGATGGGTGCTGGTACTTGGCACTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
18086153 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCTATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
18086218 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGGATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * *
18086283 TGTGCATGGCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* *
18086348 AAATTTAAAAAAATCCTGAAC-CTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCCCGAACAC--AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * **
18086412 CTTGCCTTGAAACTTCACATGAAGGCTTAAGGGATGATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
18086477 GCATTGGCATGCAGAAATATGAAGATATGCCT-AA---A-C--CCA-CC--TC-ATCCACGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
18086531 ACACATCCCGTCTTTTTGGCTGACGTAAT----GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* *
18086592 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGAAGGATCG
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGAC-GAGGGTTGTGGTAGCAGGATCG
* * * * * **
18086657 GTAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCACCCCGCCCCACTGGCCAACTGAG
773 ATAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA-TCCGCCCCTCTGGCCGGCTGAG
*
18086722 CGCCCGCACGCT-AGTTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 CGCCCGCACGCTCA-TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
18086780 GCATACGGAGCTCATTCCCAGTCTACA-ATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTA-AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
18086844 GCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCAGAGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
18086909 AACCTGACCGGCGGC
130 AACCTGACCGGCGGC
18086924 CATGAAACTT
Statistics
Matches: 3280, Mismatches: 401, Indels: 140
0.86 0.10 0.04
Matches are distributed among these distances:
884 1 0.00
885 65 0.02
886 242 0.07
887 3 0.00
888 1 0.00
889 31 0.01
890 2 0.00
892 2 0.00
893 3 0.00
895 1 0.00
896 1 0.00
897 211 0.06
898 522 0.16
899 360 0.11
900 148 0.05
901 7 0.00
902 322 0.10
903 215 0.07
904 252 0.08
907 1 0.00
908 97 0.03
909 1 0.00
910 269 0.08
911 5 0.00
912 1 0.00
914 174 0.05
916 3 0.00
917 88 0.03
918 203 0.06
919 48 0.01
920 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCAGGGGGCTGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCCCGAACACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAACCGGACGAGGGTTGTGGTAGCAGGATCGATAGCACG
TAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:18086784 original size:26 final size:26
Alignment explanation
Indices: 18086754--18086804 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18086744 GTTGACTTAG
*
18086754 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
*
18086780 GCATACGGAGCTCATTCCCAGTCTA
1 GCATACAGAGCTCATTCCCAGTCTA
18086805 CAATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:18087309 original size:26 final size:26
Alignment explanation
Indices: 18087273--18087354 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
18087263 TGGATTGACT
*
18087273 TAAGCATACGGAGTTCATTTCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
18087299 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
18087325 TAAGCATACAGAGTTCATTCCCACTC
1 TAAGCATACGGAGTTCATTCCCAGTC
18087351 TAAG
1 TAAG
18087355 ATCAAACCGG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:18087768 original size:13 final size:13
Alignment explanation
Indices: 18087750--18087779 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
18087740 ATCATGTCTA
18087750 CCACCCTATCGAT
1 CCACCCTATCGAT
18087763 CCACCCTATCGAT
1 CCACCCTATCGAT
18087776 CCAC
1 CCAC
18087780 GGCTTGCGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.50, G:0.07, T:0.20
Consensus pattern (13 bp):
CCACCCTATCGAT
Found at i:18088052 original size:26 final size:26
Alignment explanation
Indices: 18088016--18088065 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
18088006 GTTGACTTAG
18088016 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTCA
18088042 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
18088066 AAGATCAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTCA
Found at i:18088962 original size:26 final size:26
Alignment explanation
Indices: 18088911--18088963 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18088901 GTTGACTTAG
*
18088911 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
*
18088937 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
18088963 G
1 G
18088964 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:18089668 original size:26 final size:26
Alignment explanation
Indices: 18089631--18089683 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18089621 GTTGACTTAG
18089631 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
18089657 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18089683 G
1 G
18089684 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18090259 original size:733 final size:720
Alignment explanation
Indices: 18088874--18090310 Score: 2228
Period size: 733 Copynumber: 2.0 Consensus size: 720
18088864 CTCTGGCTGG
* * * * * *
18088874 CTGAGCGCCTGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGC
1 CTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGCCTAAGC
* * *
18088939 ATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGGCT
66 ATACGGAGTTCATTCCCAATCTAAGATCAGACAGGACCGAGGGTTACGACAGCACATGCTGGGCT
* * *
18089004 CGGGCATGTGCTGGCGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGATCGGTGG
131 CGAGCATGTGCTGGCGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGATGG
* * * * *
18089069 CATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCATATGATGTATGATGGGAGCTGGTA
196 CACTGAGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGAGCTGGCA
* * *
18089134 CTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGAGC
261 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAAC
18089199 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
326 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
18089264 AAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAA
391 AAATGGGCACAAAATCTTGTAAACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * *
18089329 ATACAATGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
456 ATACAACGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
*
18089394 AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
521 AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCAC
* * * *
18089459 GTGAAGGGTTAAAGCACCATTGTATGAACTTAAAAGCCATAGAAATGGCATTGGCATGTAGAAAT
586 GTGAAGGCTTAAAGCACCATTGTATGAACTTAAAAGCCATAAAAATGGCATTGGCATGCAAAAAT
*
18089524 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTTGCCCCTCTA
651 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTTGCCCCTCTA
18089589 GCCGA
716 GCCGA
*
18089594 CTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
1 CTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGCCTAAGC
* *
18089659 ATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGGCT
66 ATACGGAGTTCATTCCCAATCTAAGATCAGACAGGACCGAGGGTTACGACAGCACATGCTGGGCT
* *
18089724 CGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAAC
131 CGAGCATGTGCTGGCGCCACATTTTTCTTCGTCGGGGCA-C--CAT-----CA-C--CGGAGAAC
* * *
18089789 CTGACCGATGGCACTGGGGTTCCGACGATCAGAGGGGCCGGGCGGGTGTGTGCACATGATGTGCG
185 CTGACCGATGGCACTGAGGTTCCGACGATC-GAGGGGCCGGG-GGGTGTGCGCACATGATGTACG
* * *
18089854 ATGGGTGCTGGCACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTTGAGAACTCACAC
248 ATGGGAGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
18089919 CCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
313 CCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
18089984 GGACACTTTTTTCAAATGGGCACAAAATCTTGTAAACTTCGAGTTT-TTGTCTGAATTTTTTTGT
378 GGACACTTTTTTCAAATGGGCACAAAATCTTGTAAACTTCGAGTTTCTAG-CTGAATTTTTTTGT
* * * **
18090048 GCATGCCAAAAAAAATACAGCGATCACGTCTACCATGTTTATGGCCAAAACTCCTTCTGAAAAAA
442 GCATGCCAAAAAAAATACAACGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAA
* **
18090113 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATCGAAAACGAGTCATCTTG
507 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTG
* * * *
18090178 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
572 CCATGAAACTTCACGTGAAGGCTTAAAGCACCATTGTATGAACTTAAAAGCCATAAAAATGGCAT
*
18090243 TGGCATGCAAAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
637 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
18090308 ATC
702 ATC
18090311 CCATCTCTCT
Statistics
Matches: 646, Mismatches: 57, Indels: 15
0.90 0.08 0.02
Matches are distributed among these distances:
720 154 0.24
721 1 0.00
723 3 0.00
728 2 0.00
729 1 0.00
731 34 0.05
732 12 0.02
733 439 0.68
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (720 bp):
CTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGCCTAAGC
ATACGGAGTTCATTCCCAATCTAAGATCAGACAGGACCGAGGGTTACGACAGCACATGCTGGGCT
CGAGCATGTGCTGGCGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGATGG
CACTGAGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGAGCTGGCA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAAC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGGCACAAAATCTTGTAAACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
ATACAACGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCAC
GTGAAGGCTTAAAGCACCATTGTATGAACTTAAAAGCCATAAAAATGGCATTGGCATGCAAAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTTGCCCCTCTA
GCCGA
Found at i:18091426 original size:26 final size:26
Alignment explanation
Indices: 18091396--18091448 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18091386 GTTGACTTAG
*
18091396 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
18091422 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
18091448 G
1 G
18091449 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:18092747 original size:897 final size:895
Alignment explanation
Indices: 18090535--18093477 Score: 3960
Period size: 897 Copynumber: 3.3 Consensus size: 895
18090525 GTGGACTTAG
* * * *
18090535 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATC-GAGGGTTACGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGA-CGGAGGGTTACGACAGCACATGCTGG
* ** * *
18090599 GCTTGGGCATGTGTTGGTGCCGTATTTTTCTTCATC-AGGGCACCATCGTCGGAGCATCGCCGGA
65 GCTCGGGCATGTACTGGTGCCGCATTTTTCTTCATCGA-GGCACCATCGCCGGAGCATCGCCGGA
* * *
18090663 GAACCTGACCAGTGGCATTGGGGTTCCGGCAATCGGGGGGATCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCA-TGGCATTGGGGTTCCGGCGATCGAGGGGCTCGGGGGGGTGTGCGCACATGATG
* *
18090728 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAATTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTC
* *
18090793 TCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
18090858 ATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
* * * * *
18090923 TTTGCATGCCAACAAAAATACAAGGATCATGTTTACAAAGTTTGGGGCCAAAACTCTTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * *
18090988 AAATTTT-AGAAACCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
*
18091052 TTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
18091117 CATTGGTATGCAGAAATATGAAGATGTGCCTAACCCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGCTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
18091182 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCTGCCCGCCCGCTCATTTTGTCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCATAGTG-CCGTC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
18091247 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAGTGA-GG--GT-T-GC--G-TTAGC
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGTAGCAGGATTGGC
* *
18091304 A-CAC--AGAGTGGGACTCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCT
776 AGCACGTAGAG-GGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-T
* *
18091366 -CCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
839 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
18091422 GCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACGGAGGGGTGC-AGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACGGAGGGTTACGA-CAGCACATGCTGG
* * ** * * * *
18091486 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGCAG-A--ACC--TG
65 GCTCGGGCATGTACTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
18091546 -A-CTGA-CA--GCATTGGGGTTCTGGCGATCGAGGGGTTCGGGGGGGTGTGCGCACTTGATATG
130 AACCTGACCATGGCATTGGGGTTCCGGCGATCGAGGGGCTCGGGGGGGTGTGCGCACATGATGTG
* * *
18091606 CGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAACCCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCAC
* *
18091670 ACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
18091735 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATGTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG-TTTT
* * *
18091799 GTGCATGCCAACAAAAGTAGAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
18091864 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCCTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
** *
18091929 CACCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
18091994 ATTGCTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
584 ATTGCTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
18092059 GCATCCCATCTCTCTGGCTGGCATAGTG-C-TCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGG
649 GCATCCCGTCTCTCTGGCCGGCATAGTGCCGTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
18092122 CAAACGGAGTTCATTACCAGTCTAAGATCGGACCAGACTAAGGGTTGTAGTAGCAGGATTGGCAG
714 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGT-GTAGCAGGATTGGCAG
* *
18092187 CACGTAGAGGGTGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCC
778 CACGTAGAGGG-GACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCC
* ** *
18092252 CGCATGCTCGTTTGGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAA
842 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
18092306 GCATACGGACTTCATTCCCAA-TCTAAGATTGGATCGGATC-GAGGGTTGCGACAGCACATGCTG
1 GCATACGGAGTTCATT-CCAAGTCTAAGATCAGACCGGA-CGGAGGGTTACGACAGCACATGCTG
* *
18092369 GGCTCGGGCATGT-CTTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCGCTGG
64 GGCTCGGGCATGTAC-TGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCGCCGG
* * *
18092433 AGAACCTGACCGATGGCATTAGGGTTCCGGCGATCTGGGGGGC-CTGGGGGGGTGTTCGCACATG
128 AGAACCTGACC-ATGGCATTGGGGTTCCGGCGATC-GAGGGGCTC-GGGGGGGTGTGCGCACATG
* *
18092497 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAA
* * *
18092562 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCGTTAAAGTTTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
18092627 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG
* * *
18092692 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
18092757 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
450 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
18092822 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAA
515 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * * * *
18092887 TGGCATTGGC-ACACAAAAATATGAAGATGTGCCTAAAGCCACCTACCATCCTATCGGTCCAGGG
580 TGGCATT-GCTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
18092951 CTTGCGCATCCTGTCTCTCTGTCCGACGTAGTGCCCGTCCACCCGCCCGCTCGTTTCGTCGATTG
644 CTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG-CCGT-CGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
18093016 GCTTAGGCATCCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGA
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTG-TAGCAGGA
* ** ** *** * *
18093081 TCGATAGCGTGTAGAGGGGGACCCAACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCA
771 TTGGCAGCACGTAGA-GGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
18093146 GAGCGCCCGCACACTCGTTTCCTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAA
835 GAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * **
18093207 GCATACGGAGTTCATTCCAAGCCTAAGATGGGACCGGACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACGGAGGGTTACGACAGCACATGCTGGG
* * * *
18093272 CTCGGGCATGTACTGGTGCCGTATTTTTCTTCTTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTACTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCGCCGGAGA
** * * *
18093337 ACCTGACCGACAGCATTGGGGTTCTGGCGATCAGAGGGGC-CAGGAAGGGTTGTGCGCACATGAT
131 ACCTGACC-ATGGCATTGGGGTTCCGGCGATC-GAGGGGCTC-GG-GGGGGTGTGCGCACATGAT
* * *
18093401 TTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACT
18093466 CACACCCCCTTA
257 CACACCCCCTTA
18093478 CGGAGTTCAT
Statistics
Matches: 1800, Mismatches: 207, Indels: 83
0.86 0.10 0.04
Matches are distributed among these distances:
872 64 0.04
873 3 0.00
874 4 0.00
875 208 0.12
876 279 0.16
877 1 0.00
878 2 0.00
879 2 0.00
880 5 0.00
881 6 0.00
882 4 0.00
883 4 0.00
884 194 0.11
885 7 0.00
886 2 0.00
887 97 0.05
889 1 0.00
890 1 0.00
891 4 0.00
892 1 0.00
893 1 0.00
895 19 0.01
896 61 0.03
897 400 0.22
898 6 0.00
899 1 0.00
900 7 0.00
901 324 0.18
902 92 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACGGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTACTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCATGGCATTGGGGTTCCGGCGATCGAGGGGCTCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGCTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCATAGTGCCGTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGTAGCAGGATTGGCAGCAC
GTAGAGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCA
CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:18093217 original size:26 final size:26
Alignment explanation
Indices: 18093181--18093233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18093171 GTTAACTTAG
* *
18093181 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCAAGCCTAA
18093207 GCATACGGAGTTCATTCCAAGCCTAA
1 GCATACGGAGTTCATTCCAAGCCTAA
18093233 G
1 G
18093234 ATGGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGCCTAA
Found at i:18093512 original size:26 final size:25
Alignment explanation
Indices: 18093476--18093524 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
18093466 CACACCCCCT
*
18093476 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATT-CCACTCTAAGCA
18093502 TACGGAGTTCATTCCACTCTAAG
1 TACGGAGTTCATTCCACTCTAAG
18093525 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (25 bp):
TACGGAGTTCATTCCACTCTAAGCA
Found at i:18093767 original size:288 final size:287
Alignment explanation
Indices: 18093184--18094046 Score: 1261
Period size: 281 Copynumber: 3.0 Consensus size: 287
18093174 AACTTAGGCA
* * **
18093184 TACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCAAGCCTAAGATGGGACCGGACTGA
1 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC-A-CCTAAGATCGGACCGGACCAA
* * * * * *
18093249 GGGTTACGGTAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCTTCGGGGCAC
64 GGGCTACGGTAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
** ** * * * * *
18093314 CATCGTCGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCTGGCGATCAGAGGGGCCA
129 CATCGTCGGAGCATCATCAAAAAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCC-
* * * * *
18093379 GGAAGGGTTGTGCGCACATGATTTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCATAT
193 GG--GGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
18093444 CCCTCATCAAACCTCGAGAACTCACACCCCCT
256 CCCTCATCAAACCTCGAGAACTCACACCCCCT
18093476 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCACTCTAAGATCGGACCGGACCAAG
1 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAC-CTAAGATCGGACCGGACCAAG
* * *
18093541 GGCTACGGTAGCGCATGTTGGGCTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACC
65 GGCTACGGTAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* *
18093606 ATCGTCGGAGCATCATCAAAAAACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
130 ATCGTCGGAGCATCATCAAAAAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* *
18093671 GGGGTGTACGCACATGATGTGCCATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCT
195 GGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
18093736 CATCAAATCTCGAGAACTCACACCCCCT
260 CATCAAACCTCGAGAACTCACACCCCCT
* *
18093764 TACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATT-C-CC----ATCGGACTGGACCAAGG
1 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCACCTAAGATCGGACCGGACCAAGG
* *
18093823 GCTGCGGCAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
66 GCTACGGTAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
18093888 TCGTCGGAGCATCATCAAAAAACCTGACCGACAACATTGGGGTTTCGACGATTGGGGGGGTCGGG
131 TCGTCGGAGCATCATCAAAAAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
18093953 GGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
196 GGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
18094018 ATCAAACCTCGAGAACTCACACCGCCT
261 ATCAAACCTCGAGAACTCACACCCCCT
18094045 TA
1 TA
18094047 AAGAGCATTT
Statistics
Matches: 521, Mismatches: 49, Indels: 13
0.89 0.08 0.02
Matches are distributed among these distances:
281 225 0.43
285 1 0.00
286 1 0.00
287 1 0.00
288 123 0.24
290 3 0.01
291 127 0.24
292 40 0.08
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (287 bp):
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCACCTAAGATCGGACCGGACCAAGG
GCTACGGTAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
TCGTCGGAGCATCATCAAAAAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCT
Found at i:18094678 original size:26 final size:26
Alignment explanation
Indices: 18094648--18094700 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18094638 GTTGACTTAG
*
18094648 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
*
18094674 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
18094700 G
1 G
18094701 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:18095593 original size:26 final size:26
Alignment explanation
Indices: 18095556--18095608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18095546 GTTGACATAG
* *
18095556 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18095582 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18095608 G
1 G
18095609 ATCAGGCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18097230 original size:898 final size:894
Alignment explanation
Indices: 18093764--18099164 Score: 7032
Period size: 898 Copynumber: 6.0 Consensus size: 894
18093754 CACACCCCCT
* * **
18093764 TACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCA-TC---G----GACTGGACCAA
1 TACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
* * * *
18093821 GGGCTGCGGCAGCACATGTTGGGCT-TGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
66 GGGTTGCGGCAGCACATGCTGGGCTCT-GGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCA
* **** * * * * * *
18093885 CCATCGTCGGAGCATCATCAAAAAACCTGACCGACAACATTGGGGTTTCGACGATTGGGGGGGTC
130 CCATCGCCGGAG-----------AACCTGACCGGTGGCATTGGGGTTCCGGCAATCGGGGAGGCC
* * * *
18093950 --G-GGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
184 GGGAGGGGGTGTGCTCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTA
* * *
18094012 TCCCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGAGATGTTACAGGTTTGCTA
249 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
18094077 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
314 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
18094142 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGT
379 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * *
18094207 TTGGGGCTAAAAGTCCTTC-CAAACAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
444 TTGGGGCCAAAACTCCTTCTGAAA-AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
18094271 CGTGAAAAAT-AGAAAACGAGTCGTC-TTGCGATGAAACTTCACGTGAAGGCTT-AGGGACCATT
508 CATGAAAAATAAAAAAACGAGTCATCTTTGC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
18094333 GTATGAATTTAAAAGCCATAAAAATGGCTTTGGCATGCAAAAATATGAAGATGTACCTAAACCCA
572 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTCCCTAAACCCA
* * *
18094398 CCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--CG-C-CC
637 CCTACCAACCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCC
* * ** * *
18094457 GGCCCACCCGCTTGTTTCTTTGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GA
702 CGCCCGCCCGCTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-
* * * * * * *
18094521 ATCAGACCAAGGATTACGATAGCAGGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
766 ACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGAGGGGGACCCG-CCGATCCCCGGC
* * * * *
18094586 TTGTGCATCCCACCCCTTTAGCCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCA
830 TTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCA
* * * * *
18094651 TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATCGGACCAGACCGA
1 TACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
* * * * * *
18094716 GGGTTACGACAGCACATGCTGGGCTCCGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
66 GGGTTGCGGCAGCACATGCTGGGCTCTGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGG---
* * * *
18094781 ATCACTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCAGGGG-GGCC-
128 --CAC-----CATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCAATC-GGGGAGGCCG
* * * **
18094844 -G-GCGGGTGCG-T-ACATGATGTGCGACAGGTGCTGGTACTTGGCCCTTATATTGGCACC-CTA
185 GGAGGGGGTGTGCTCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCTCTA
* * *
18094904 TCCTTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
249 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
18094969 CCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACAC
314 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
18095034 TTCGATTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
379 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * * * * *
18095099 TTGGGGCCAACACTCCTTC-CAAAAAAATTTAAAAAATCCTGAATCGCAAAATGTTTCAAAAATC
444 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * * *
18095163 ATGAAAAATAGAAAAACGAGTCGTCTTGGCATGAAACTTCACGTCAAGGCTTAAGGGACCACTGT
509 ATGAAAAATAAAAAAACGAGTCATCTTTGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
18095228 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG-AGATGTCCCCTTAAACCCA
574 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGT-CCC-TAAACCCA
* *
18095292 CCTACCAACCTAGTCGATCCACAGCGTTGCGCATCCCTTCTCTTTGGCCGGCGTGAGTGCCGCGC
637 CCTACCAACCTA-TCGATCCACAGC-TTGCGCATCCCGTCTCTCTGGCCGGCGT-AGTGCC-CGC
* ** * *
18095357 CGCCCGCCCGCCCGCTCGTGCCGTCTGCGTTGGCTTTAGGGCTATACGGAGTTCATTCCGAGTCT
698 CGCCCGCCCGCCCGCTCATTTCAT-TG-GTTGGC-TTA-GGC-ATACGGAGTTCATTCCCAGTCT
* * * *
18095422 AAGATCAGACCGAACCGAGGGTTGCGATAGCAGGATCGATAGCACGTAGAGGGGGACCCGGCCGT
758 AAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGAGGGGGACCC-GCCGA
* * * *
18095487 TCCCC-GATATGCGCATCCC-CCCCTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTG
822 TCCCCGGCT-TGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTG
*
18095550 ACATAGGCA
886 ACTTAGGCA
* * *
18095559 TACGGAGTTCATTGCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGGCCGGACCAA
1 TACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
* * * ** *
18095624 GGGTTGCGGCAGCACTTGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTTGTCGGGGCAC
66 GGGTTGCGGCAGCACATGCTGGGCTCTGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCAC
* * *
18095689 CATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCC-G--A-C---GA-TCGGGGA-GGGGTGT
131 CATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCAATCGGGGAGGCCGGGAGGGGGTGT
*
18095745 GCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAA
196 GCTCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAA
* *
18095810 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATT
261 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
18095875 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
326 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
*
18095940 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAA
391 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* **
18096005 CTCCTTCTGAAAAAATTTTAAAGAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAA
456 CTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAA
18096070 AAAACGAGTCATCTTTGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
521 AAAACGAGTCATCTTTGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
18096135 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTCCCTAAACCCACCTACCAACCTATC
586 GCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTCCCTAAACCCACCTACCAACCTATC
* * *
18096200 GATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCGCCTGCTC
651 GATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCCGCCCGCTC
* * *
18096265 ATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGT
715 ATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* * * *
18096330 TGC-AGCAGCTGGATCGGCAACACGC-GAAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCA
780 TGCGA-TAGCAGGATCGACAGCACGCAG-AGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCA
* ** *
18096393 CCCCTCTGGTCGGCTGAGATCCTGCGCGCTTGTTTCATGGGTTGACTTAGGCA
842 CCCCTCTGGCCGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCA
** * * *
18096446 TATAGACTTCATTGCCAGTCTAAGCATACGGAGTTCGTTCCCAATCTAAGATCAGACCAGACCAA
1 TACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
* * * * *
18096511 GGGTTGCAGCAGCACATGCTGGGCTCTGGCACGTGTTGGTGTCACATTTTTCTTTGCCGGGGCAC
66 GGGTTGCGGCAGCACATGCTGGGCTCTGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCAC
18096576 CATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCAATCGGGGAGGCCTGGGAGGGGGTG
131 CATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCAATCGGGGAGGCC-GGGAGGGGGTG
18096641 TGCTCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAA
195 TGCTCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAA
* * *
18096706 ACCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCTGTAGCCAT
260 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
18096771 TAAAGTGTCTGAATTCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
325 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
18096836 AGCTGAATTTTTTTGTGCATGCCAAAAAATAATACAAGGATCACGTCAACCAAGTTTGGGGCCAA
390 AGCTGAATTTTTTTGTGCATGCCAAAAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * **
18096901 AACTCTTTCTGAAAAAATTTTAAAGAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
454 AACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
18096966 AAAAAACGAGTCATCTTTGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
519 AAAAAACGAGTCATCTTTGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
18097031 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCAACCTA
584 AAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTCCCTAAACCCACCTACCAACCTA
* * *
18097096 TCGATCCACAGCTTGCGCATTCCGTCTCTCAGGCCGGCGTAGTGCCCGCCTGCCCGCTCGCCCGC
649 TCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCCGCCCGC
* * *
18097161 TCATTTCATTGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGG
713 TCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * * * *
18097226 GTTGC-AGTAGCTGGATCGACAACACACGGAGGGGGACCCAGCCAATCCCCGGCTTGCGCATCCC
778 GTTGCGA-TAGCAGGATCGACAGCACGCAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCC
** *
18097290 ACCCCTCTGGCCGGCTGAGATCCTGCGCGCTTGTTTCATGGGTTGACTTAGGCA
841 ACCCCTCTGGCCGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCA
* * *
18097344 TATGGACTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAA
1 TACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
* *
18097409 GGGTTGCGGCAGCACATGCTGGGCTCTGGCACGTGTTGGTGTCACATTTTTCTTCGTCGGGGCAC
66 GGGTTGCGGCAGCACATGCTGGGCTCTGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCAC
* * *
18097474 CATCGCCGGATAACCTGACCGGTGGCATTGGGGTTCCGACAATCGGGGAGGCCGGGGAAGGGGTG
131 CATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCAATCGGGGAGGCC-GGGAGGGGGTG
18097539 TGCTCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAA
195 TGCTCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAA
* *
18097604 ACCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCAT
260 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
18097669 TAAAGTGTCTGAATTCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
325 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
18097734 AGCTG-ATTTGTTTGTGCATGCCAAAAAAAATACAAGAATCATGTCTACCAAGTTAGGGGCCAAA
390 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
18097798 ACACCTTCCGAAAAAAGTTTAAAAAA-CTCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA-C
455 ACTCCTTCTGAAAAAATTTTAAAAAATC-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* *** *
18097861 AGAAAACGAGTCATCTCACCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTAC
519 AAAAAACGAGTCATCTTTGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * ** *
18097926 AAGCCATAGAAATGGCATTGGTACACAAAAATATGAAGATGAGCCTAAACCCACCTACCACCCTA
584 AAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTCCCTAAACCCACCTACCAACCTA
*
18097991 TCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTG--C-CCGCCCGCCCGCCCGCT
649 TCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCT
** * * ** * * * *
18098053 TGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAACCTAAGATCAAATCAGACCAAGGG
714 CATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* * **
18098118 TTGCGGTAGCAGGATCTACAGCATACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCAC
779 TTGCGATAGCAGGATCGACAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCAC
* * *
18098183 CCCTCTGGGCAGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCA
843 CCCTCTGGCCGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCA
* * * *
18098235 TACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAA
1 TACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
* * * * * * * *
18098300 GGGTTGTGCCAGCACATGCTGGGCTCAGGGATGTGCTGGTACCACATTTTTCTTCGTCAGGACAC
66 GGGTTGCGGCAGCACATGCTGGGCTCTGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCA-
* * * *
18098365 CATCATCAGAGCATCCTCGAAGAACTTGACCGGTGGCATTGGGGTTCCGACGATC-GGGAGGGCC
130 C--CATC---G----C-CGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCAATCGGGGA-GGCC
* * *
18098429 -GGAGGGGGTGTG-TGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
184 GGGAGGGGGTGTGCT-CACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCT
* * * * * * *
18098492 ATCCTTCATCAAACCTTGAGTACTCACACCCCCTTAAAGAGAATTTGAGATTTTCCATGTTTCCT
248 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
18098557 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACATTTTTCAAATGGTCCCAAAATCTTGTACA
313 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
18098622 CTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAA
378 CTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
*
18098687 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
442 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
** * * *
18098752 TTGTGAAAAAT-AGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAC
507 TCATGAAAAATAAAAAAACGAGTCATCTTTG-CATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
18098815 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCC
571 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTCCCTAAACCC
* ** *
18098880 ACCTACCACCCTATCGATCCAC-GACTTGCATATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCC
636 ACCTACCAACCTATCGATCCACAG-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCC
*
18098944 GCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
699 GCCCGCCCGCCCGCTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * **
18099009 AGACTGGACTGAGGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGGACTCGATCGATCTTCG
764 AGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGAGGGGGACCCG-CCGATCCCCG
* ** * * * * * * *
18099074 GCTTGTAG-ATCCTGCCCTTCTGGCCGGTTGAGCTCCCGTACGCTCGTTTCGTGGGTTGACTTAG
828 GCTTG-CGCATCCCACCCCTCTGGCCGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTGACTTAG
18099138 GCA
892 GCA
*
18099141 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTGCCAGTCTAAG
18099165 ATCGGACCAG
Statistics
Matches: 4048, Mismatches: 369, Indels: 175
0.88 0.08 0.04
Matches are distributed among these distances:
885 2 0.00
886 87 0.02
887 239 0.06
888 6 0.00
889 6 0.00
890 10 0.00
891 347 0.09
892 323 0.08
893 74 0.02
894 330 0.08
895 382 0.09
896 121 0.03
897 247 0.06
898 884 0.22
899 3 0.00
900 193 0.05
901 7 0.00
902 306 0.08
903 5 0.00
904 17 0.00
905 13 0.00
906 193 0.05
907 4 0.00
908 162 0.04
909 85 0.02
910 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
TACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
GGGTTGCGGCAGCACATGCTGGGCTCTGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCAC
CATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCAATCGGGGAGGCCGGGAGGGGGTGT
GCTCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAA
AAAACGAGTCATCTTTGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTCCCTAAACCCACCTACCAACCTATC
GATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCA
TTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
GCGATAGCAGGATCGACAGCACGCAGAGGGGGACCCGCCGATCCCCGGCTTGCGCATCCCACCCC
TCTGGCCGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCA
Found at i:18097371 original size:26 final size:26
Alignment explanation
Indices: 18097341--18097393 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18097331 GTTGACTTAG
* * *
18097341 GCATATGGACTTCATTGCCAGTCTAA
1 GCATACGGACTTCATTCCCAATCTAA
*
18097367 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGACTTCATTCCCAATCTAA
18097393 G
1 G
18097394 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAATCTAA
Found at i:18098262 original size:26 final size:26
Alignment explanation
Indices: 18098232--18098284 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18098222 GTTGACTTAG
18098232 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
18098258 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18098284 G
1 G
18098285 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:18099270 original size:13 final size:13
Alignment explanation
Indices: 18099252--18099283 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
18099242 GCCGGGGGGG
18099252 TGTGCGTACATGA
1 TGTGCGTACATGA
18099265 TGTGCGTACATGA
1 TGTGCGTACATGA
18099278 TGTGCG
1 TGTGCG
18099284 ATGGGTGCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.19, C:0.16, G:0.34, T:0.31
Consensus pattern (13 bp):
TGTGCGTACATGA
Found at i:18100884 original size:26 final size:26
Alignment explanation
Indices: 18100848--18100897 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18100838 AACTTAGGCA
*
18100848 TACGGAGTTCATTCCTAGTCTAAGCG
1 TACGGAGTTCATTCCGAGTCTAAGCG
18100874 TACGGAGTTCATTCCGAGTCTAAG
1 TACGGAGTTCATTCCGAGTCTAAG
18100898 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCGAGTCTAAGCG
Found at i:18101781 original size:26 final size:26
Alignment explanation
Indices: 18101751--18101803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18101741 GTTAACTTAG
18101751 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
18101777 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18101803 G
1 G
18101804 ACTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18102463 original size:4 final size:4
Alignment explanation
Indices: 18102454--18102478 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
18102444 TCGATGTAGT
18102454 GCCC GCCC GCCC GCCC GCCC GCCC G
1 GCCC GCCC GCCC GCCC GCCC GCCC G
18102479 TTCATTTCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.72, G:0.28, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:18102580 original size:909 final size:902
Alignment explanation
Indices: 18099266--18102908 Score: 4815
Period size: 909 Copynumber: 4.0 Consensus size: 902
18099256 CGTACATGAT
*
18099266 GTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
** * * * *
18099331 AAATTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
* * *
18099396 TTAAAGTGTCTAAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
* * * ** * * *
18099461 TAGCTGACTTTTTTGGTGAATGCCAGTAAAAATACAACGATCATGGCTACCAAGTTTGGGGCCAA
196 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** *** *
18099526 AACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGGTTT-GAAAATCATGAAAAAT
261 AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAA-GTTTCAAAAATCATGAAAAAT
18099590 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
325 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** * * * *
18099655 AAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTCCCTAAACCCACTTACCACCCTA
390 AAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
18099720 TCGATCCACGGCTTGCACATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG--C--
455 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGT
* * * *
18099781 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGGTAATTCCTAGTCTAAGATCAGACCAGACCGAGG
520 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGG
* * ** * * *
18099846 GTTGCGGCAGTC-GGATCGGTAGCACGTAGAGGGGGGCCCGGTCGATCCTCGGTTTGTGCATCCC
585 GTTGCGGCAG-CAGGATCGGCAGCACGTAAAGGGGGAACCGGTCGATCCCCGGCTTGCGCATCCC
* * * ** * * *
18099910 GCCCCTCTGGTCGATTGAGCGCCCGCATACTCGTTTCGTAGGTTGACTTAGGCATAC-AGAGTTC
649 GCCCCTCTGGCCGGTTGAGAGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGA-AGTTC
* * ** * * * *
18099974 ATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGATGGTTGTAGC
713 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGC
* ** *
18100039 AGCACATGCTGGGCTTGGGCATTTGCCAGTGCCGA-ATTTTTCTTCACCGAGGCACCATCGCCGG
778 AGCACATGCTGGGCTTGGGCATGTGCTGGTGCC-ACATTTTTCTTCACCG-GGCACCATCGTCGG
* *
18100103 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGATCCGCCGATCGGGGGGGCCGGGGAGGG
841 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGG
*
18100166 TGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 -GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
18100231 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCA
65 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCA
* ** *
18100296 ATTAAAGTGTTTCTAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTT
130 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
* * **
18100361 TTAGCTGAATTTTTTTATGCATGCCAA-AAAAAGTACAAGGATCACATCTAAAAAGTTTGGGGCC
195 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * **
18100425 AAACCTCCTTCCAAAAAAATTTTAAAAAGTTCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAA
259 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * *
18100490 TAGAAAACGAGTCGTCTTGCCATGAATCTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTA
324 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
18100555 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
389 CAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
18100620 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-AGCGTAGT--------GCCTGCCCGCCC
454 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCC
* * *
18100676 ATTCGTTTCGTCGGTTGACTTAGGCATACGGAGCTCATTTCC-AGTCTAAGATC--A--A-ACT-
518 GTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCCTAGTCTAAGATCAGACCAGACTG
* * * *
18100734 --GGAT-C-G-AG--GGTTGCAGCAGCATGTAAAGGGGG-ACCAGGTCGATCCCCGGCTTGCGCA
582 AGGGTTGCGGCAGCAGGAT-CGGCAGCACGTAAAGGGGGAACC-GGTCGATCCCCGGCTTGCGCA
* * * * *
18100791 TCCTGCCCCTCTTGTCGGTTGAGCGCCC-CACGCTCATTTCGTGGGTTAACTTAGGCATACGGAG
645 TCCCGCCCCTCTGGCCGGTTGAGAGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGAAG
* * * * * *
18100855 TTCATTCCTAGTCTAAGCGTACGGAGTTCATTCCGAGTCTAAGATTGGACCAGACGGAGGGTTAC
710 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAT
* * * *
18100920 GGTAGCACAGGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATCGTT
775 GGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGG-CACCATCGTC
* * * * *
18100985 GGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCC-AGTGATCGGGGGGGTCGGGGGGT
839 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGG
*
18101049 GTGCGCACATGATGTGCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
18101114 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
*
18101179 TTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
* * * * *
18101244 TACCTAAATGTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTT-GGGCAAA
196 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * *
18101308 AAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGGAAAATA
261 AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
*
18101373 GAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
326 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
18101438 AGCCATAAAAATGGTATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCTAT
391 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
18101503 CGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCAGTCCACCCGCC
456 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCGCCCGCC
* * * * * * *
18101568 TGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTCCATTCCCAGTCTAAGATCGGATCAGACTG
517 CGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTG
* * * * * *
18101633 ATGGTTGCAGCAGTAGGATCGACAGCACGTAGAGGGGGAACCGGTCGATCCCCGACTTGCGCATC
582 AGGGTTGCGGCAGCAGGATCGGCAGCACGTAAAGGGGGAACCGGTCGATCCCCGGCTTGCGCATC
* * *
18101698 CCGTCCCTCTGGCCGGTTGAGAGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTT
647 CCGCCCCTCTGGCCGGTTGAGAGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTT
18101763 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-CTGGACCAGACCGAGGGTTATG
712 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTATG
* * ** * *
18101827 GTAGCACATGCTGGGCTTGGGCATGTGCTGGTTCCGTATTTTTCTTCGTCAGGGCACCATCGTCG
776 GCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTC-ACCGGGCACCATCGTCG
* * * * *
18101892 GAGCATCGCTGGGGAACCTGACCGACGACACTGGGGTTCCGACGATCGGGGGTGCCGGGGGGG
840 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG
* * * *
18101955 GCATGTGCACATGATGTGGGATGGGTGCTGGTACTCGGGCCTTATATTGGCCCCCTATCCCTCAT
1 G--TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
18102020 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
64 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
18102085 AATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
129 AATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
** * *
18102150 CCTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCC
194 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
*
18102215 AAAACTCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
259 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
18102280 GAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
324 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
18102345 CAAGCCATAAAAATGGTATTGGCATGCAAAAATATGAAGATGTGCCTAAGCCCACCTACCACCCT
389 CAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
18102410 ATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGTCGATGTAGTGCCCGCCCGCCCGCCCGCCCG
454 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCCCG
* * * ** *
18102475 CCCGTTCATTTCGTCGGTTGGTTTAGGCATACTGAGTTCATTCCTAGTCTAAGATTGGACCGGAC
515 CCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGAC
* * * * * * * *
18102540 TGAGGGTTACGGTAGCAGGATTGGCAGTACGCAAAGGGGGACCCGATTGATCCCCGGCTTGCGCA
580 TGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAAAGGGGGAACCGGTCGATCCCCGGCTTGCGCA
* * *
18102605 TCCCGCCCCTCTGGCCGGTTGAAAGCCCTCACGCTCATTTCGTGGGTTAACTTAGGCATACGGAG
645 TCCCGCCCCTCTGGCCGGTTGAGAGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGAAG
* * * * *
18102670 TTCATCCCCAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTAT
710 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAT
* * * * *
18102735 GGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCATCATC-AC
775 GGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTC-ACCGGGCACCATCGTC
* * * * * * * * *
18102799 TGGAGCATCACCGGAGATCCTGATCGGCGGCATTGGGGTTCCAACAATCGGGGGTGTCGGGGGGT
839 -GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG
18102864 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
18102909 CGATCCACGG
Statistics
Matches: 2401, Mismatches: 285, Indels: 106
0.86 0.10 0.04
Matches are distributed among these distances:
881 223 0.09
882 228 0.09
883 10 0.00
884 193 0.08
885 58 0.02
886 2 0.00
887 1 0.00
888 1 0.00
889 3 0.00
892 6 0.00
893 59 0.02
895 3 0.00
897 43 0.02
898 7 0.00
900 10 0.00
901 440 0.18
902 1 0.00
903 1 0.00
904 2 0.00
905 58 0.02
906 202 0.08
907 45 0.02
908 235 0.10
909 561 0.23
910 3 0.00
911 1 0.00
913 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGG
TTGCGGCAGCAGGATCGGCAGCACGTAAAGGGGGAACCGGTCGATCCCCGGCTTGCGCATCCCGC
CCCTCTGGCCGGTTGAGAGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGCAGC
ACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCACCATCGTCGGAGCAT
CGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG
Found at i:18102698 original size:26 final size:26
Alignment explanation
Indices: 18102662--18102713 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18102652 TAACTTAGGC
*
18102662 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
*
18102688 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
18102714 TCAGACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGA
Found at i:18103400 original size:495 final size:497
Alignment explanation
Indices: 18102409--18103403 Score: 1266
Period size: 496 Copynumber: 2.0 Consensus size: 497
18102399 CCTACCACCC
* *
18102409 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGTCGATGTAGTGCCCGCCCGCCCGCCCGCCC
1 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGAGGTAGTGCCCGCCCGCCCGCCCGCCC
* * * **
18102474 GCCCGTTCATTTCGTCGGTTGGTTTAGGCATACTGAGTTCATTCCTAGTCTAAGATTGGACCGGA
66 GCCCGTTCATGTCGTCGATTGGCTTAGGCATACTGAGTTCATTCCTAGTCTAAGATTGGACCAAA
* * * * * * * *
18102539 CTGAGGGTTACGGTAGCAGGATTGGCAGTACGCAAAGGGGGACCCGATTGATCCCCGGCTTGCGC
131 CTGAGGCTTACGATAGCAGGATCGACAGCACACAAAGGGGGACCCAATCGATCCCCGGCTTGCGC
** * * **
18102604 ATCCCGCCCCTCTGGCCGGTTGAAAGCCCTCACGCTCATTTCGTGGGTTAACTTAGGCATACGGA
196 ATCCCGCCCCTCTGGCCGACTGAAAGCCCGCACGCTCATTTCGTGGGTTAACTTACGCATACAAA
18102669 GTTCATCCCCAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTA
261 GTTCATCCCCAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTA
** * * * * *
18102734 TGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCATCATCAC
326 CAGCAGCACATGCTAGGCTCGGGCAAGTGCTGCTGCCACATTTTTCTTCGTCGGGGAACCATCAC
* * * *
18102799 TGGAGCATCACCGGAGATCCTGATCGGCGGCATTGGGGTTCCAACAATCGGGGGTGTCGGGGGGT
391 TGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACAATCGGGGGGGCCGGGGGGT
*
18102864 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
456 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * * *
18102906 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGGGTAGTGCCCG-CCGCCCGCCTGCCT
1 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGAGGTAGTGCCCGCCCGCCCGCCCGCCC
** *
18102970 GCCCGTTTGTGTCGTCGATTGGCTTAGGCATAC-GTAGTTCATTCCCT-GTCTAAGATTGGACTA
66 GCCCGTTCATGTCGTCGATTGGCTTAGGCATACTG-AGTTCATT-CCTAGTCTAAGATTGGACCA
* *
18103033 AA-TCGAGGCTTGCGATAGTAGGATCGACAGCACACAAAGGGGGACCCAATCGATCCCCGGCTTG
129 AACT-GAGGCTTACGATAGCAGGATCGACAGCACACAAAGGGGGACCCAATCGATCCCCGGCTTG
** * * * * ** *
18103097 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGTTTGACTTACGTTTAT
193 CGCATCCCGCCCCTCTGGCCGACTGAAAGCCCGCACGCTCATTTCGTGGGTTAACTTACGCATAC
* ** * *
18103162 AAAGTTCATTCCCAGTCTAATCATAC-AGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGG
258 AAAGTTCATCCCCAGTCTAAGAATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGG
* * * * ** *
18103225 GTTGCAGCGGCACATGCTGGGCTCGGGCAAGTGTTGCTGCTGCATTTTTCTTTGTCGGGGAACCA
322 GTTACAGCAGCACATGCTAGGCTCGGGCAAGTGCTGCTGCCACATTTTTCTTCGTCGGGGAACCA
* * * * * *
18103290 TTA-TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATTGGGGGGGCCGG
387 TCACT-GGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACAATCGGGGGGGCCGG
18103354 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
451 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
18103401 TAT
1 TAT
18103404 TGGCCCCTAT
Statistics
Matches: 423, Mismatches: 70, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
494 1 0.00
495 180 0.43
496 194 0.46
497 48 0.11
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.25
Consensus pattern (497 bp):
TATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGAGGTAGTGCCCGCCCGCCCGCCCGCCC
GCCCGTTCATGTCGTCGATTGGCTTAGGCATACTGAGTTCATTCCTAGTCTAAGATTGGACCAAA
CTGAGGCTTACGATAGCAGGATCGACAGCACACAAAGGGGGACCCAATCGATCCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGACTGAAAGCCCGCACGCTCATTTCGTGGGTTAACTTACGCATACAAA
GTTCATCCCCAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTA
CAGCAGCACATGCTAGGCTCGGGCAAGTGCTGCTGCCACATTTTTCTTCGTCGGGGAACCATCAC
TGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACAATCGGGGGGGCCGGGGGGT
GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
Found at i:18109757 original size:25 final size:25
Alignment explanation
Indices: 18109728--18109803 Score: 98
Period size: 25 Copynumber: 3.0 Consensus size: 25
18109718 GTTGACTTAG
*
18109728 GCATATAGAGTTCATTCCTAGTCTA
1 GCATACAGAGTTCATTCCTAGTCTA
* *
18109753 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCT-A
* *
18109779 GCATACAAAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCTAGTCTA
18109804 AGATCGGACT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 22 0.51
26 21 0.49
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCTAGTCTA
Found at i:18109790 original size:26 final size:26
Alignment explanation
Indices: 18109736--18109805 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
18109726 AGGCATATAG
**
18109736 AGTTCATTCCTAGTCT-AGCATACGG
1 AGTTCATTCCTAGTCTAAGCATACAA
*
18109761 AGTTTATTCCTAGTCTAAGCATACAA
1 AGTTCATTCCTAGTCTAAGCATACAA
*
18109787 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCTAGTCTAAG
18109806 ATCGGACTGG
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 15 0.38
26 24 0.62
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (26 bp):
AGTTCATTCCTAGTCTAAGCATACAA
Found at i:18112731 original size:892 final size:893
Alignment explanation
Indices: 18111007--18117799 Score: 8245
Period size: 892 Copynumber: 7.6 Consensus size: 893
18110997 TCTAAAATGG
* * * * *
18111007 GGACTGAGGGTTACGGCAGCAGGATCGACAGCATGCAGAAGGGGACCTGACCGATCCTCTGCTTG
1 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAGCGATCC-CTGCTTG
* * * *
18111072 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATAT
65 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * * * * * *
18111137 GGAGTTCATTCCCAGTGTAAGCTTATGAAGATCAATACCAGTCAAAGATCCAATCAGACTGAGGG
130 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACCGAGGG
* * **
18111202 TTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCGTCGGGGCACCAT
195 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT
* * * *
18111267 C-G--TCGGAGAACCTGACCGGCGGCATTTGGGTTCCGGCGATCTAGGGGGCCGAGGGGGTGTGC
260 CGGACTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGC
* * * *
18111329 GCACTTGATTTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCTATCCCTCATCAAACCT
325 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCT
18111394 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
390 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
18111459 GTGTCTAAAATGGGGACACTTTCTTCAAATGGTAACAAAATCTTGTACACTTCGATTTTTTAGCT
455 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
18111524 GAATTTTTTTGTGCATGCCAAAAAAAAATACAAGTATTACGTCTACCAAGTTTGGGGTCAAAACT
520 GAATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** ** *
18111589 CCTTCGAAAAATTTTTTAAAAAATCCTGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
584 CCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
*
18111654 ACGCGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
649 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
18111719 ATAGAAATGGTATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
714 ATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
18111784 CCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTT
779 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCTCGCTCGTT
* * * **
18111849 TCGTTGGTGGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCCAACC
843 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * *
18111900 GGACTGAGGGTTGCTGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGAGCGATCCCCTGCTTA
1 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAGCGAT-CCCTGCTTG
* * * *
18111965 CGCATCCTGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGATTGACTTAGGCATAT
65 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
18112030 GGAGTTCATTCCCAGTCTAAGCATACGGAGATGAATCCCAGTCAAAGATCCGATCAGACCGAGGG
130 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACCGAGGG
* * * *
18112095 TTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTAATTTTCTTCACCGGGGCACCAT
195 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT
18112160 C-G-C-CGGAGAACCTGACCGGCGGCATTGGGGTTCCTG-CGATCGAGGGGGCC-GGGGGGTGTG
260 CGGACTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGAGGGGGCCGGGGGGGTGTG
* * *
18112220 CGCACTTGATATGCGATGGGTG-TCGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAACC
324 CGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAAC
18112284 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
388 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
18112349 AAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
453 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
18112414 CTGAATTGTTTTATGCATGCCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
518 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * *
18112479 TCCTTCCAAAAAAATTTTAAAAAATCCCAAATCGCAAAAAATTTTAAAAATCATGAAAAATAGAA
583 TCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
** * *
18112544 AACGAGTTATCTTGCCAATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAG
648 AACGAGTCGTCTTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
18112609 CTATAAAAATGGTATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACATACCATCCTATCG
712 CCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
18112674 ATTCACGGCTTGCACATCCCGTCTCTCTAGTCGGCGTAGTGCACGCCCGCCCGCCCGCTAG-T--
777 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGCCCGCCCGCCCGCTCGCTCG
* *
18112736 TTT-GTCGGTTGGCTTAGGCATACGGAGGTCATTCCCAGTCTAAGATTGGACC
841 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** ** * * * *
18112788 AGACCAAGGGTTGCGGCAGCAGGATCGACAGCACATAGAGAGGGACTCGACCGATCCCCGACTTG
1 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAGCGATCCCTG-CTTG
* * * * *
18112853 CGCATCCCGCCCTTCTAGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
65 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * * * *
18112918 AGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCAGACCGGATCAAGGG
130 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACCGAGGG
* ** * * *
18112983 TTACGATAGCACATGCTGGGCTCGGGTATGTGCTGGTGCCGTATTTTTCTTCACC--GG-AGCAT
195 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT
* * * * * *
18113045 C-G--TCGGAGAACCTGA-TGGCGACATTAGGGTTTCGACGATCAAGAGGGCCGGGGGGGTGTGC
260 CGGACTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGC
* *
18113106 GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACC
325 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACC
* * * **
18113171 TCAAGAACTCACACCCACTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTTCCCATTAA
389 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
** **
18113236 AGTGTCTGAAATGGAAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAT
454 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
18113301 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATTACGTCTACCAAGTTTGAGGTCAAAACT
519 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * ** **
18113366 CCTTTCGAAAAAATTTTTAAAAATCCTTAACACC--AAAAATTTTTGAAAATTATGAAAAATAGA
584 CCTTCCAAAAAAATTTTAAAAAATCC-CAA-ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* ** * *
18113429 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAAGACCAATATATGAATTTACAAG
647 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
18113494 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
712 CCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
18113559 ATCCACGGCTTGCGCATGCCGTCTCTCTGGCCGGCGTAGT---GCCCGCCCACCCG-T---TCGT
777 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCTCGCTCGT
* * *
18113617 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATTGGACC
842 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * ** * * * *
18113669 CGATTGAGGGTTACGGCAATAGGATTGGCAGCATGCAGAGGGGGACCCG-GCCGATCCCTGAGTT
1 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAG-CGATCCCTG-CTT
* * * * * *
18113733 GC-CTATCCTACCCCTCTGGCCGGCTAAGCGCCTGCACGGTCGTTTCGTGAGTTGACTTAGCCAT
64 GCGC-ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
18113797 ACCGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-T--C-G-----GA--C---CA-A---A-
128 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACCGAG
** * * *
18113836 GGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGAATTTTTCTTCGCCGGGGCACC
193 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACC
* * ** *
18113901 ATCACCGGAGCATCACTGGAGAACCTGATCGACGGCATTGGGGTTCCGGTGAT-GGGGGGGCCGG
258 AT---CGGA-C-T--C-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGG
*
18113965 GGGCGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCC
315 GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCC
* *
18114030 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCA
378 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * * * * *
18114095 GTGGCCATTAAAGTGTCTGAAATGTGGATAGTTTTATCAAATGGACACAAAATCTTGTACACTGC
443 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * **
18114160 GAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTATGAAGTTTG
508 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * ** *
18114225 GGGCCAGAACTACTTCCAAAAAAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTA
573 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
* * *
18114290 AAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGATTAAGGGACCATTGCATGA
638 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
18114355 ATTTACGAGCCAT----A----ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
703 ATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * ** ** * *
18114412 ACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTGGCCAACGT-G-G-TTCCCG-TC-CAC-
768 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCG
* * * *
18114471 C-CGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATC
833 CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * **
18114531 GGACTGAGGGTTGCAGCAGCAGTATCGACAGCACATAGAGGGGGACCC-AGCCGATCCCTGGCTT
1 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAG-CGATCCCT-GCTT
* * * * *
18114595 GCGCATTCCGTG--CCTCTCGCTGGCTGGGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCA
64 GCGCA-TCC-TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
18114658 TACGGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGAATCG
127 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAG-ACCG
* * * * **
18114722 AGGGTTGCGGTAGCGCATGCTGGGCTCGGGCATGGGCTGGTGCCACATTTTTCTTCGTCGGGGCA
191 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
** *
18114787 CCATCACCGGAGCATCGTCGGAGAACCTGACCAACAGCATTGGGGTTCCGACGATCG-GGGGGCC
256 CCAT---C-G-G-A-C-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC
* * *
18114851 -GGGGGATGTGCGCACATGATGTCCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
313 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATC
*
18114915 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCC
377 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
18114980 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
442 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * ** *
18115045 CGAGTTTTTGGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACATCTAAGAAGGTT
507 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
** * ** *
18115110 GATGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGT
572 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGT
*
18115175 AAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
637 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* ** **
18115240 AATTTACAAGCCATAAAAAT-ATCATTGGCATATAGAAATATGAAGATGCACCTAAACCCACCTA
702 AATTTACAAGCCATAAAAATGGT-ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
18115304 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTCTCGCCCACCCGC
766 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGCCCGCCCGC
* * * * **
18115369 CCGCTCG-T--TTT-GTC----GG--TAGCCATACAGATTTCATTCCCAGTTTAAGATCAAACC
830 CCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * *
18115423 GGACTGAGGGTTACGGCAGCAGGAT-TAGCAGCACGTAGAGGGGGACCC-AGCTGATCCCTGGCT
1 GGACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGAGC-GATCCCT-GCT
* * * * *
18115486 TGCGCATCCCGCCCCTCTGTCCGGCTGAGCACCCGCACGCTCGTTTCATTGGTTGACTTAGGCAT
63 TGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* ** * *
18115551 ACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAC
128 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACCGAG
* * * *
18115616 GGTTGTGGCAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACC
193 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACC
* * * * *** *
18115681 ATCGGCGGACCATTGTCGGAGAACCTGACCGACGACATTAGGGTTCCGATGATC-AAAAGGCCCG
258 AT---CGGA-C----TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGG
* *
18115745 GGGGGTGTGCGCACATGATATGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
315 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCC
* * *
18115810 TCATCAAACCTCGAGAACTCACAACCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAG
379 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
18115875 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCACATGGTCACAAAATCTTGTACACTTCG
444 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
18115940 AGTTTTTAGCTGAATTTTTTTGTGCTTGCCAGAAAAAATA-AATGGATCACTTCTACCAAGTTTG
509 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA-GGATCACGTCTACCAAGTTTG
* * * * *
18116004 AGGCCAAAACTCCTTTCGAAAAAATTTTAAAAATTCCCGAACCGTAAAAAGTTTCAAAAATCGTG
573 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
* * *
18116069 -AAAATAAAAAACGTGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
638 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
18116133 ATTTACAAGCCATAAAAATGGCATTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
703 ATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
18116198 ACCCTATCGATCCACGGCTTGCACATCCCGTCTATTTGGCCGACGTAGTGCCTGCCCGCCCACTC
768 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCGCCCGCCC
* * * *
18116263 ACTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATGGGACC
832 GCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** * * *
18116325 GGA-TCAAGGGTTATGGCAGCAGGATCGGCAGCACGCAGAAGGGAACCCGA-CTGAT-CCTCGAC
1 GGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAGC-GATCCCT-G-C
* * * * * *
18116387 TTGCGCAT-CTCGCCCCTCTGGCTGGTTGAGCGCCTGCACACTCATTTCATGGGTTGACTTAGGC
62 TTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
18116451 ATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-CGAACTAGACC
126 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGATC-AGACC
* * *** *
18116515 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGGGCTGGTGCCGCATTTTTCTTTGTCGGGGT
190 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
* *
18116580 ACCATCGTCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTTCGATGATCG-GGGGGC
255 ACCA---TCGGA-C-T--C-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGC
*
18116644 CGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCTCCCTA
312 CG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTA
*
18116709 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
375 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
18116774 CCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
440 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
18116839 TTCGAATTTTTAGCTGAATTTTTTTGTGCACGCCAAGAAAAATACAAGGATAACGTCTACCAAGT
505 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** * * * *
18116904 TTGGGGTGAAAACTCCTTCCAAAACAATTTTAAAAAATCCCAATCTGTAAAAAGTTTCAAACATC
570 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
* *
18116969 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTA
635 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
18117034 TGAATTTACAAGCCATAAAAATGGCT-TTGGCATGCA-AATATATGAAGATGTGCCTAAACCCAC
700 TGAATTTACAAGCCATAAAAATGG-TATTGGCATGCAGAA-ATATGAAGATGTGCCTAAACCCAC
* * ** * *
18117097 CTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTAACCGGCGTAGTCCCGCCCACCC
763 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCC
* * * * * * *
18117162 GCCCGCCCGTTCGTCTCGTCAGTTGGCATAGGCATACGGAGTTCATT-CCAGTCTAAGATCGAAT
828 GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
18117226 C
893 C
* * ** * * *
18117227 GGACCGAGGGTTGTGGCAGCAGGATCGGTAGCATGCAAAGGAGGACCCG-GTCGATCCCTGGCTT
1 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAG-CGATCCCT-GCTT
* * ** * * *
18117291 GTGCATCCTGCCCCTCTAGATGGCTGAGCCCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATA
64 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * * *
18117356 CGGAGTTCATTCCCAGTTTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGG
129 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACCGAGG
* * * *
18117421 GTTGCGACAGCACATGCTGGGCTCGGGCATGGGCTGGTGCCACTTTTTTCTTCACCGGGGCACCA
194 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG---CA
* * * **
18117486 CCACCAGAGCATCGTCGGAGAACCTAACCGGCTGCATTGGGGTTCCGGTGATCG-GGGGGCCAGG
256 CCATC-G-G-A-C-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC-GG
* * *
18117550 GGGGCTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCTCTATCCC
315 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCC
*
18117615 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAG
379 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
18117680 TAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTG
444 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
18117745 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
509 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
18117800 AGCATACGGA
Statistics
Matches: 5122, Mismatches: 626, Indels: 295
0.85 0.10 0.05
Matches are distributed among these distances:
855 52 0.01
856 1 0.00
857 2 0.00
858 4 0.00
859 1 0.00
860 3 0.00
861 3 0.00
862 255 0.05
863 7 0.00
864 2 0.00
865 3 0.00
866 3 0.00
868 4 0.00
869 28 0.01
870 360 0.07
871 1 0.00
872 1 0.00
873 2 0.00
874 1 0.00
877 1 0.00
878 4 0.00
879 1 0.00
880 7 0.00
881 177 0.03
882 1 0.00
883 1 0.00
884 27 0.01
885 205 0.04
886 621 0.12
887 15 0.00
888 353 0.07
889 8 0.00
890 4 0.00
891 119 0.02
892 836 0.16
893 578 0.11
894 88 0.02
895 4 0.00
896 2 0.00
898 6 0.00
899 5 0.00
900 4 0.00
901 14 0.00
902 780 0.15
903 354 0.07
904 166 0.03
905 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAGCGATCCCTGCTTGC
GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACCGAGGGT
TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
GGACTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCTCGCTCGTTTCG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
Found at i:18112948 original size:26 final size:26
Alignment explanation
Indices: 18112912--18112964 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18112902 GTTGACTTAG
18112912 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
18112938 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18112964 G
1 G
18112965 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18114686 original size:26 final size:26
Alignment explanation
Indices: 18114656--18114706 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18114646 TTGACTTAGG
18114656 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
18114682 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
18114707 GATCAGACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:18115578 original size:26 final size:26
Alignment explanation
Indices: 18115547--18115599 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18115537 GTTGACTTAG
18115547 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
18115573 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18115599 G
1 G
18115600 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:18116479 original size:26 final size:26
Alignment explanation
Indices: 18116449--18116501 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18116439 GTTGACTTAG
18116449 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18116475 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18116501 G
1 G
18116502 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18116900 original size:903 final size:897
Alignment explanation
Indices: 18113794--18117799 Score: 5279
Period size: 902 Copynumber: 4.5 Consensus size: 897
18113784 TTGACTTAGC
* * * * **
18113794 CATACCGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCAAAGGTTGCGATAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
18113858 CTCGGGCATGTGCTGGTGCTGA-ATTTTTCTTCGCCGGGGCACCATCACCGGAGCATC-ACTGGA
65 CTCGGGCATGGGCTGGTGC-CACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTC-GGA
* * * *
18113921 GAACCTGATCGACGGCATTGGGGTTCCGGTGATGGGGGGGCCGGGGGCGGTGTGCGCACTTGATG
128 GAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCC-GGGG-GGTGTGCGCACATGATG
*
18113986 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTTGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTC
* *
18114051 ACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * * *
18114116 ATGTGGATAGTTTTATCAAATGGACACAAAATCTTGTACACTGCGAGTTTTTAGCTAAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** * * * *
18114181 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTATGAAGTTTGGGGCCAGAACTACTTCCAAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTT-CGAAA
* * **
18114246 AAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTC
449 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTC
* * * * *
18114311 TTACCATGAAACTTCACGTGAAGGATTAAGGGACCATTGCATGAATTTACGAGCCAT--AATTGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
18114374 CA--TG--T--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTG
579 CATTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
18114433 CGCATCCCGTCTCTCTGGCCAACGTGGTT-CCCGTCCA----CCCGCTCGTTTCGTCGATTGGCT
644 CGCATCCCGTCTCTCTGGCCGACGTAGTTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
18114493 TAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCAGCAGCAGTATCG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTACGGCAGCAGGATCG
* ** * * ** * *
18114558 ACAGCACATAGAGGGGGACCCAGCCGATCCCTGGCTTGCGCAT-TCCGTGCCTCTCGCTGGCTGG
774 GCAGCACGCAGAAGGGGACCCAGCTGATCCCTGGCTTGCGCATCT-CGCCCCTCTGGCTGGCTGA
* *
18114622 GCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
838 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
18114682 CATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGAATCGAGGGTTGCGGTAGCGCATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTAG-ACCGAGGGTTGCGGCAGCACATGCTGGG
*
18114746 CTCGGGCATGGGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
65 CTCGGGCATGGGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * *
18114811 ACCTGACCAACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGATGTGCGCACATGATGTCCA
130 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
18114876 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
18114941 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
18115006 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** * * *
18115071 CTTGCCAACAAAAATACAAGGATCACATCTAAGAAGGTTGATGCTAAAACTCCTTCTGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTC-GAAAAAAT
* *
18115136 TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGC
**
18115201 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** ** *
18115266 GGCATATAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
583 TGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
18115331 TCCCGTCTCTCTGGCCGGCGTAGTT-CTCGCCCACCCGCCCGCTCGTTT--T--GTCGG--TAGC
648 TCCCGTCTCTCTGGCCGACGTAGTTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * **
18115389 CATACAGATTTCATTCCCAGTTTAAGATCAAACCGGACTGAGGGTTACGGCAGCAGGATTAGCAG
713 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTACGGCAGCAGGATCGGCAG
* * * * * *
18115454 CACGTAGAGGGGGACCCAGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGTCCGGCTGAGCACC
778 CACGCAGAAGGGGACCCAGCTGATCCCTGGCTTGCGCATCTCGCCCCTCTGGCTGGCTGAGCGCC
* *
18115519 CGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
843 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
18115574 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGACGGTTGTGGCAGCACAAGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * ** * *
18115639 TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGGCGGACCATTGTCGGAGAA
66 TCGGGCATGGGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCGGAGAA
* * *** * *
18115704 CCTGACCGACGACATTAGGGTTCCGATGATCAAAAGGCCCGGGGGGTGTGCGCACATGATATGCG
131 CCTGACCGACGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
18115769 ATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAA
195 ATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
18115834 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
18115899 GGACACTTTTTTCACATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
18115964 CTTGCCAGA-AAAAATA-AATGGATCACTTCTACCAAGTTTGAGGCCAAAACTCCTTTCGAAAAA
389 CATGCCA-ACAAAAATACAA-GGATCACGTCTACCAAGTTTGAGGCCAAAACTCC-TTCGAAAAA
* * * *
18116027 ATTTTAAAAATTCCCGAACCGTAAAAAGTTTCAAAAATCGT-GAAAATAAAAAACGTGTCGTCTT
451 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTT
*
18116091 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
18116156 TTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
581 TTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
18116221 CATCCCGTCTATTTGGCCGACGTAGTGCCTGCCCGCCCACTCACTCGCTCGTTTCATCGGTTGGC
646 CATCCCGTCTCTCTGGCCGACGTAGT---TGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
18116286 TTAGGCATACGGAGTTCATTCCCAGTCTAACATGGGACCGGA-TCAAGGGTTATGGCAGCAGGAT
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACT-GAGGGTTACGGCAGCAGGAT
* * *
18116350 CGGCAGCACGCAGAAGGGAACCC-GACTGAT-CCTCGACTTGCGCATCTCGCCCCTCTGGCTGGT
772 CGGCAGCACGCAGAAGGGGACCCAG-CTGATCCCT-GGCTTGCGCATCTCGCCCCTCTGGCTGGC
* * * *
18116413 TGAGCGCCTGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
835 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
*
18116476 CATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * ** *
18116541 TCGAGCATGGGCTGGTGCCGCATTTTTCTTTGTCGGGGTACCATCGTCGGAGCATC-ACTGGAGA
66 TCGGGCATGGGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTC-GGAGA
* *
18116605 ACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGCCGAGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTG
*
18116670 CGATGGGTGCTGATACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
18116735 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
18116800 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * ** *
18116865 TGCACGCCAAGAAAAATACAAGGATAACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCAAAACA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCGAAAA-A
* * *
18116930 ATTTTAAAAAATCCC-AATCTGTAAAAAGTTTCAAACATCGTGAAAAATAGAAAACGAGTCGTCT
451 ATTTTAAAAAATCCCGAA-CCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
* *
18116994 TGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
18117059 -TTTGGCATGCA-AATATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
580 ATTT-GCATGCAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * * *
18117122 GCGCATCCCATCTCTCTAACCGGCGTAG-T-CCCGCCCACCCGCCCGCCCGTTCGTCTCGTCAGT
643 GCGCATCCCGTCTCTCTGGCCGACGTAGTTGCCCGCCCACCCGCCCG--C--TCGTTTCGTCGGT
* * * **
18117185 TGGCATAGGCATACGGAGTTCATT-CCAGTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGCAG
704 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTACGGCAGCAG
* * * * * *
18117249 GATCGGTAGCATGCA-AAGGAGGACCC-GGTCGATCCCTGGCTTGTGCATC-CTGCCCCTCTAGA
769 GATCGGCAGCACGCAGAAGG-GGACCCAGCT-GATCCCTGGCTTGCGCATCTC-GCCCCTCTGGC
* * *
18117311 TGGCTGAGCCCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTA
831 TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
18117376 AG
896 AG
* * * * *
18117378 CATATGAAGTTCATTCCCAGTCTAAGATCGGA-TCGGACTGAGGGTTGCGACAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
18117442 CTCGGGCATGGGCTGGTGCCACTTTTTTCTTCACCGGGGCACCACCACCAGAGCATCGTCGGAGA
65 CTCGGGCATGGGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * *
18117507 ACCTAACCGGCTGCATTGGGGTTCCGGTGATCGGGGGGCCAGGGGGGCTATGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCC-GGGGGG-TGTGCGCACATGATGTG
*
18117572 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCAC
* *
18117637 ACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
18117702 GGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
18117767 TGCATGCCAACAAAAATACAAGGATCACGTCTA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTA
18117800 AGCATACGGA
Statistics
Matches: 2744, Mismatches: 313, Indels: 108
0.87 0.10 0.03
Matches are distributed among these distances:
885 1 0.00
886 356 0.13
887 10 0.00
888 149 0.05
889 1 0.00
890 1 0.00
892 462 0.17
893 302 0.11
894 90 0.03
895 1 0.00
896 20 0.01
898 12 0.00
899 13 0.00
900 5 0.00
901 27 0.01
902 806 0.29
903 327 0.12
904 161 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGGGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCGAAAAAATTTT
AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTACGGCAGCAGGATCGGCAGCAC
GCAGAAGGGGACCCAGCTGATCCCTGGCTTGCGCATCTCGCCCCTCTGGCTGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:18117380 original size:26 final size:26
Alignment explanation
Indices: 18117351--18117403 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18117341 GTTGACTTAG
* *
18117351 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
18117377 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18117403 G
1 G
18117404 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18118149 original size:411 final size:416
Alignment explanation
Indices: 18117374--18118210 Score: 1281
Period size: 411 Copynumber: 2.0 Consensus size: 416
18117364 ATTCCCAGTT
* * * *
18117374 TAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCACATGCT
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACGGAGGGTTGCGACAGCACATGCT
* * * *
18117439 GGGCTCGGGCATGGGCTGGTGCCACTTTTTTCTTCACCGGGGCACCACCACCAGAGCATCGTCGG
66 GGCCTCGGGCATGGGCTGGTGCCACATTTTTCTTCACCGGGG-----CCACC--A-CATCGCCAG
** * *
18117504 AGAACCTAACCGGCTGCATTGGGGTTCCGGTGATCGGGGGGCCAGGGGGGCTATGCGCACATGAT
123 AGAACCTAACCGGCTGCATTGGGGTTCCGACGATCGAGGGGCCAGAGGGGCTATGCGCACATGAT
* *
18117569 GTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACT
188 GTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
18117634 CACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
253 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGA
* * * *
18117699 ATTGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
318 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTT
*
18117764 TTGTGCATGCCAACAAAAATACAAGGATCACGTC
383 TTATGCATGCCAACAAAAATACAAGGATCACGTC
* * *
18117798 TAAGCATACGGAGTTCTTTCCCAGTCTAAGATCGGACCGAACGGAGGGTTGCGGCAGCACATGCT
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACGGAGGGTTGCGACAGCACATGCT
* * *
18117863 GGCCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG-CA-C-CATCGCCAGAGAACCTG
66 GGCCTCGGGCATGGGCTGGTGCCACATTTTTCTTCACCGGGGCCACCACATCGCCAGAGAACCTA
*
18117925 ACCGG-TAGCATTGGGGTTCCGACGATCGAGGGGCC-GAGGGG-TGTGCGCACATGATGTGCGAT
131 ACCGGCT-GCATTGGGGTTCCGACGATCGAGGGGCCAGAGGGGCTATGCGCACATGATGTGCGAT
*
18117987 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
*
18118052 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCTATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGG
18118117 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTATGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTATGCA
18118182 TGCCAACAAAAATACAAGGATCACGTC
390 TGCCAACAAAAATACAAGGATCACGTC
18118209 TA
1 TA
18118211 CCAAGTTCGG
Statistics
Matches: 382, Mismatches: 30, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
411 233 0.61
412 6 0.02
413 44 0.12
417 1 0.00
418 2 0.01
424 96 0.25
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (416 bp):
TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACGGAGGGTTGCGACAGCACATGCT
GGCCTCGGGCATGGGCTGGTGCCACATTTTTCTTCACCGGGGCCACCACATCGCCAGAGAACCTA
ACCGGCTGCATTGGGGTTCCGACGATCGAGGGGCCAGAGGGGCTATGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTATGCAT
GCCAACAAAAATACAAGGATCACGTC
Found at i:18118701 original size:26 final size:26
Alignment explanation
Indices: 18118665--18118717 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18118655 GTTGACTTAG
*
18118665 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18118691 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18118717 G
1 G
18118718 ATCGGACGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18119718 original size:184 final size:185
Alignment explanation
Indices: 18119405--18119820 Score: 550
Period size: 184 Copynumber: 2.3 Consensus size: 185
18119395 GTTGGCTTAG
* * * * * * * ** *
18119405 GCATACGGAGTTCATTCCTTGTGTAAGAT-TGAATCAGACTGAGGGTTGCGATAGCAGGATCGGT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCAAACAGAGGGTTGTGGCAGTAGGATCGGT
* * *
18119469 AGCACGCAGAGGGGGACCCGACTAATCCCTGGCTTCTGCATCCCGCCCCTCTGGCCGGCTGAGCG
65 AGCACACAGAGGGGGACCCGACCAATCCCCGGCTTCTGCATCCCGCCCCTCTGGCCGGCTGAGCG
** * ** *
18119534 CCCGCACACTTGTTTCATGGGTTGACTTAGGTGTACGGAGTTCATT-CCAGTCTTA
130 CCCGCACACTCATTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
18119589 GCATACGGAGTTCATTTCC-AGTCTAAGATCAGACCAGACAGAGGGTTGTGGCAGTAGGATCGGT
1 GCATACGGAGTTCA-TTCCTAGTCTAAGATCAGACCAAACAGAGGGTTGTGGCAGTAGGATCGGT
* * *
18119653 AGCACACAGAGGGGGACCCGACCAATCCCCGTCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCG
65 AGCACACAGAGGGGGACCCGACCAATCCCCGGCTTCTGCATCCCGCCCCTCTGGCCGGCTGAGCG
**
18119718 CCCGCAGGCTCATTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 CCCGCACACTCATTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
18119774 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAAACTGAGGGTT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACAGAGGGTT
18119821 ACGACAGCAC
Statistics
Matches: 202, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
184 150 0.74
185 52 0.26
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACAGAGGGTTGTGGCAGTAGGATCGGTA
GCACACAGAGGGGGACCCGACCAATCCCCGGCTTCTGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACACTCATTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:18119778 original size:26 final size:26
Alignment explanation
Indices: 18119748--18119800 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18119738 GCTGACTTAG
18119748 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18119774 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18119800 G
1 G
18119801 ATCAGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18120670 original size:26 final size:26
Alignment explanation
Indices: 18120639--18120688 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
18120629 GTTGACTTAG
* *
18120639 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCACAGTCTAA
*
18120665 GCATACAGAGTTCATTCACAGTCT
1 GCATACAGAATTCATTCACAGTCT
18120689 GAGATCGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCACAGTCTAA
Found at i:18121269 original size:26 final size:26
Alignment explanation
Indices: 18121233--18121285 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18121223 GTTGACTTAG
*
18121233 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18121259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18121285 G
1 G
18121286 ATCGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18121314 original size:594 final size:587
Alignment explanation
Indices: 18120153--18121326 Score: 1579
Period size: 594 Copynumber: 2.0 Consensus size: 587
18120143 TTTTAGTTGA
* * *
18120153 ATTTTTTTATGCATGCTAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCT
1 ATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
** * ** * * *
18120218 TTTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAGAAATAGAAAGT
66 TCCGAAAAAATTTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATAAGAAATAAAAAAT
* * *
18120283 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
131 GAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAA
* * *
18120348 CAAAATGGCATTGGCACACAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCC
196 AAAAATGGCATTGGCACACAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCC
* *
18120413 ACGGCTTACGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCTTGTTTCATCGGTTGGCTT
261 ACGACTTACGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTT
* * *
18120478 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACTAGACTGAAGGTTGCAACAGCAGGATTGG
326 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGACTGAAGGTTACAACAGCAGGATCGG
* * * *
18120543 CAACACGTAGAGGGGGACCCGACCGATCCTCGACCTACGCATCCCGACCCTCTGGCCAGTTGAAC
391 CAACACGCAAAGGGGGACCCGACCGATCCTCGACCTACGCATCCCGACCCTCTAGCCAGCTGAAC
* *
18120608 ACCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACAG
456 ACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACAG
* * *
18120673 AGTTCATTCACAGTCTGAGATCGGATGGGATCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
521 AGTTCATTCACAGTCTAAGATCGGATAGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
18120738 AC
586 AC
*
18120740 ATTTTTTTATGGATGCCAGA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC
1 ATTTTTTTATGCATGCCA-ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC
** *
18120804 TTCCGAAAAAATTTT-AAAAAATCCCAAACCACAAAAAGTTTTGAGAATCATGAA-AAATAAAAA
65 TTCCGAAAAAATTTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCAT-AAGAAATAAAAA
*
18120867 ATGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAGGCC
129 ATGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
18120932 AAAAAAATGGCATTGGCA-AGTAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCAATCGA
194 AAAAAAATGGCATTGGCACA-CAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCAATCGA
*
18120996 TCCACGACTTGCGCATCCCGTCTCTCTGG-CAGACGTAGTGCCCGGCCGCCCACCCGCTCGTTTC
258 TCCACGACTTACGCATCCCGTCTCTCTGGTC-GACGTAGTG--C--CCG----CCCGCTCGTTTC
* * * *
18121060 GTCGGTTGGTTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGA-TCGAGGGTTACG
314 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGACT-GAAGGTTACA
*** * * * * * * ** * *
18121124 GTGGTAGGATCGGCAGCACGCAAAGGGGGACCGGGCTGATCCTCGACTTGTGCATCCTGCCCCTC
378 ACAGCAGGATCGGCAACACGCAAAGGGGGACCCGACCGATCCTCGACCTACGCATCCCGACCCTC
* * * * *
18121189 TAGCC-GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCCTTCCCA
443 TAGCCAG-CTGAACACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCA
* * *
18121253 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATAGGACCGAGGGTTGTGGCAGCACAT
507 GTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCGGATAGGACCGAGGGTTGCGGCAGCACAT
*
18121318 GCTGGGCTC
572 GCTAGGCTC
18121327 TAGCATGAGC
Statistics
Matches: 507, Mismatches: 66, Indels: 21
0.85 0.11 0.04
Matches are distributed among these distances:
585 2 0.00
586 189 0.37
587 73 0.14
588 2 0.00
590 3 0.01
593 2 0.00
594 236 0.47
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.24
Consensus pattern (587 bp):
ATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
TCCGAAAAAATTTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATAAGAAATAAAAAAT
GAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAA
AAAAATGGCATTGGCACACAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCC
ACGACTTACGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTT
AGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGACTGAAGGTTACAACAGCAGGATCGG
CAACACGCAAAGGGGGACCCGACCGATCCTCGACCTACGCATCCCGACCCTCTAGCCAGCTGAAC
ACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACAG
AGTTCATTCACAGTCTAAGATCGGATAGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
AC
Found at i:18122155 original size:26 final size:26
Alignment explanation
Indices: 18122124--18122173 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18122114 GTTGACTTAG
*
18122124 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18122150 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
18122174 GAGATCGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18123864 original size:691 final size:690
Alignment explanation
Indices: 18122326--18124063 Score: 2594
Period size: 691 Copynumber: 2.5 Consensus size: 690
18122316 CCGAACCGCA
*
18122326 AAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
18122391 ATTTACAAGCCATAAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 ATTTACAAGCCATAAAAAATGGCATTGGAAT-CAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
18122456 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTACCCGCCCGCCCGTC
130 CACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGCCGGCATAGT----GCCCGCCCGTC
18122521 CGCCCGTCAGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
191 CG-CC--C-GCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
18122586 CCAGACCAAGGGTTGTGGCAGTAGGATCAGTAGCACGCAGAGGGGGACCCGACTGATCCCCACCT
252 CCGGACCGAGGGTTGTGGCAGTAGGATCGGAAGCACGCAGAGGGGGACCCGACTGATCCCCAGCT
* *
18122651 TGCAAATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCAAATCGGGGGGGCCGGGGGAGTGTGCGCA
317 TGCAAATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAAATCGGGGGGGCCAGGGGAGTGTGCGCA
*
18122716 CATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
382 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
18122781 AGAACTCACACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
447 AGAACTCACAACCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
18122846 GTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTAA
512 GTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCACCTAA
* * * * *
18122911 TTTTTTTTTGATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGACCAAAACTCCTTT
577 TTGTTTTGTGATACCAAAAAAAATACAAGGATCACATCTACAAAGTTTGGGACCAAAACTCCTTT
*
18122976 CGAAAAAATTTTAAAAAATCTCAAAACGTAAAAAGTTTCAAAAATCGTG
642 CGAAAAAATTTTAAAAAATCCCAAAACGTAAAAAGTTTCAAAAATCGTG
* * * *
18123025 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGGAGGCTTAAGGGACCATTGTATGA
1 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
18123090 ATTTACAAGCCATAAAAAATGGCATTGGAATGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
66 ATTTACAAGCCATAAAAAATGGCATTGGAAT-CAGAAATATGAAGATGTGCCTAAACCCACCTAC
18123155 CACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGTCCGCC
130 CACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGTCCGCC
* * *
18123220 CGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACTG
195 CGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * *
18123285 AGGGTTATGGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGACTGATCGCCAGCTTGCAAATC
260 AGGGTTGTGGCAGTAGGATCGGAAGCACGCAGAGGGGGACCCGACTGATCCCCAGCTTGCAAATC
* * *
18123350 CCGCCCCTCTGGCCGGCTGAGTGCCCGCAGATTGGGGGGGCCAGGGG-GTGTGCGCACATGATGT
325 CCGCCCCTCTGGCCGGCTGAGCGCCCGCAAATCGGGGGGGCCAGGGGAGTGTGCGCACATGATGT
*
18123414 GCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
390 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
18123479 CAACCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
455 CAACCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
* *
18123544 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTCACCTGAATTGTTTT
520 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCACCT-AATTGTTTT
* * *
18123609 GTGCATACCAAAAAAAATACAAGGATCACATCTACCAAGTTT-GGAGCCTAAAGTCC-TTCTGAA
584 GTG-ATACCAAAAAAAATACAAGGATCACATCTACAAAGTTTGGGA-CCAAAACTCCTTTC-GAA
* ** * * *
18123672 AAAATTTTAAAAAATCCCGAGCCTTAAAAAGTTTCAAAATTTGTG
646 AAAATTTTAAAAAATCCCAAAACGTAAAAAGTTTCAAAAATCGTG
*
18123717 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGA
1 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
18123782 ATTTACAAGCCAT-AAAAATTTCATTTGCACAT-AGAAATATAAAGATGTGCCTAAACCCACCTA
66 ATTTACAAGCCATAAAAAATGGCA-TTGGA-ATCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * **
18123845 CCACCCTATCGATCCACGGCTCGTGCATCCCGTCTCTCTGGCCGAAATAGTGCCCG--C--CCGC
129 CCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGTCCGC
* ** * * *
18123906 CCGCTCGTTTTGTCGATTGGCTTAGGTATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
194 CCGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * * * * * *
18123971 GAGCGTTGCGACAGCAGGATCGAAAACACACAAAGGGGGACCCGACCGATCCCCAGCTTGCAAAT
259 GAGGGTTGTGGCAGTAGGATCGGAAGCACGCAGAGGGGGACCCGACTGATCCCCAGCTTGCAAAT
* **
18124036 CCTGCCCCTCTGGCCGATTGAGCGCCCG
324 CCCGCCCCTCTGGCCGGCTGAGCGCCCG
18124064 TATGCTCGTT
Statistics
Matches: 946, Mismatches: 87, Indels: 24
0.89 0.08 0.02
Matches are distributed among these distances:
687 136 0.14
689 1 0.00
690 194 0.21
691 265 0.28
692 161 0.17
693 2 0.00
694 2 0.00
695 13 0.01
699 172 0.18
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (690 bp):
AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAAATGGCATTGGAATCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGTCCGCCC
GCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
GGGTTGTGGCAGTAGGATCGGAAGCACGCAGAGGGGGACCCGACTGATCCCCAGCTTGCAAATCC
CGCCCCTCTGGCCGGCTGAGCGCCCGCAAATCGGGGGGGCCAGGGGAGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
AACCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCACCTAATTGTTTTGT
GATACCAAAAAAAATACAAGGATCACATCTACAAAGTTTGGGACCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCAAAACGTAAAAAGTTTCAAAAATCGTG
Found at i:18124128 original size:26 final size:26
Alignment explanation
Indices: 18124092--18124142 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18124082 TGACTTAGGG
* *
18124092 ATACGGAGTTCATTTCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
18124118 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
18124143 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:18125061 original size:26 final size:26
Alignment explanation
Indices: 18125015--18125067 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
18125005 GTTGACTTAG
18125015 GCATACGAAGTTCATTCCCAGT-TAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
18125040 GCATAACGGAGTTCATGT-CCAGTCTAA
1 GCAT-ACGAAGTTCAT-TCCCAGTCTAA
18125067 G
1 G
18125068 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.17
26 15 0.62
27 5 0.21
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18126380 original size:903 final size:889
Alignment explanation
Indices: 18123385--18126714 Score: 4318
Period size: 903 Copynumber: 3.7 Consensus size: 889
18123375 CGCAGATTGG
* *
18123385 GGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
18123450 CCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGCGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
18123515 GCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGT
131 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * * *
18123580 GCACTTCGAGTTTTCACCTGAATTGTTTTGTGCATACCAAAAAAAATACAAGGATCACATCTACC
196 ACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * * * * *
18123645 AAGTTTGGAGCCTAAAGTCCTTCTGAAAAAATTTTAAAAAATCCCGAGCCTTAAAAAGTTTCAAA
261 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* ** * *
18123710 ATTTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGT
326 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
** * *
18123775 TGTATGAATTTACAAGCCATAAAAATTTCATTTGCA--CATAGAAATATAAAGATGTGCCTAAAC
391 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAAC
* * **
18123838 CCACCTACCACCCTATCGATCCACGGCTCGTGCATCCCGTCTCTCTGGCCGAAATAGTGCCCGCC
454 CCACCTAACACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * * *
18123903 CGCCCGCTCGTTTTGTCGATTGGCTTAGGTATATGGAGTTCATTCCCAGTCTAAGATCGGACCGG
519 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATC-GAACGG
* * * ** * * * *
18123968 ACCGAGCGTTGCGACAGCAGGATCGAAAACACACAAAGGGGGACCCGACCGATCCCCA-GCTTGC
583 ACCGAGGGTTGTGGCAGCA-GATCGGCAGCACGCAGAGGGGGACCCG-CCGAT-CGCAGGCTTGC
** * * *
18124032 AAATCCTGCCCCTCTGGCCGATTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGGATACG
645 GCATCC-GCCCCTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-
* *
18124097 GAGTTCATTTCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
708 GAGTTCATTCCCAGTCTAAGCAAACAGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGT
* * * *
18124162 TGCGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATC
772 TGCGGTAGAACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC
* * * * *
18124227 G-CGAAAGTATCGTCGGAGAACCTGACCGACAGCATTGGGCTTCCGACGAT--A
837 GTCG-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGA
18124278 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
18124343 CCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
18124408 GCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAAATGGTCACAAAATCTTG
131 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTG
*
18124473 TACACTTCGAGTTTTTAGCTGATTTTTTATGTGCATGCC-AAAAAAATACAAGGATCACGTCTAC
195 TACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * * *
18124537 CATGTTTAGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAA
260 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
18124602 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGTCTTAAGGGACCA
325 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
18124667 TTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCTTGGAGAAATAATTGAAAGATGCTGTCCT
390 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAT-A-TG-AAGATG-TG-CCT
*
18124731 AAACCTCACCTACACACCCTATCGAT-CACAGGCTTGCCGCATCCCGTCT-TCTTGGCCGACGTA
450 AAACC-CACCTA-ACACCCTATCGATCCAC-GGCTTG-TGCATCCCGTCTCTC-TGGCCGACGTA
* * * *
18124794 GTGCCCACCCGCCCGCCCGCACCACTCGTCCTTCATCAGTTGGCTTAGGCATACAGAGTTTCATG
510 GTG----CCCGCCCGCCCG-----CTCGT--TTCGTCGGTTGGCTTAGGCATACGGAG-TTCATT
** * * * * *
18124859 CCCAGTCTAGATAGGGATCAGACCGAGGGTTGCTGCGATAGCAAGATTGGCAGGCATTGCAGAGG
563 CCCAGTCTA-ATATCGAACGGACCGAGGGTTG-TG-G-CAGC-AGATCGGCA-GCA-CGCAGAGG
* * *
18124924 GGGACCCGGTCGATCCCGCGGGCTTTGGTCGCATCCCGCCCCTCTGGCCGGTTGAGCGGCGCCGC
621 GGGACCC-GCCGAT--CGCAGGC-TT-G-CGCAT-CCGCCCCTCTGGCCGATTGAGC-GC-CCGC
* * *
18124989 GACGCTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGT-TAAGCATAACGGAGTT
677 -ACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCA-AACAGAGTT
* * *
18125053 CATGTCCAGTCTAAGATCGGACCAGCGACCGAGGGTTGTGGCA-AGACATGCTGGGGCTCAGGCA
739 CAT-TCCAGTCTAAGATCGGACCA--GACCGAGGGTTGCGGTAGA-ACATGCT-GGGCTCGGGCA
* * *
18125117 TGCTGC-GGTGCTGCATTTTGCTTCTTCGGAGGCCACCATCGTCGGAGCATCGCCGGAGAACCTG
799 TG-TGCTGGTGCCGCATTTTTCTTCATCGG-GG-CACCATCGTCGGAGCATCGCCGGAGAACCTG
* *
18125181 ACCGATGGAATTGGGGTTCCGACGATCGA
861 ACCGACGGCATTGGGGTTCCGACGATCGA
18125210 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
** * * *
18125275 CCTATCCCTTGTAAAACCTCAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
18125340 GCTGCTAGTAGCCATTAATGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
131 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
18125405 ACACTTTGATTTTTTAGCTGATTTTTTGTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
196 ACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* *
18125470 AAGTTTGGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
261 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* *
18125535 AATCATGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
326 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
18125600 TGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAAAAATATGAAGATGTGCCTAAACCC
391 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
* *
18125665 ACCTAACACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGTCGACGTAGTGCCTGCCCG
456 ACCTAACACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTA--G--TG--C-
* *
18125730 TCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG-GTTCATTCCTAGTCTAATATCA
514 -CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCG
*
18125794 AACTGGACTGAGGGTTGTGGCAGCAGTATCGGCAGCACGCAGAGGGGGACCCTGCCGAT-GCTAG
578 AAC-GGACCGAGGGTTGTGGCAGCAG-ATCGGCAGCACGCAGAGGGGGACCC-GCCGATCGC-AG
* * *
18125858 GCTTGCGCATGCCGCCCCTCTGGCAGACTGAGCGCCCGCACGCTGGTTTCGTGGGTTGACTTAGG
639 GCTTGCGCAT-CCGCCCCTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
18125923 CATACAGAGTTCATTCCCAGTCTAAGCAAACTGAGTTCATTCCTAG-CTAAGATCAGACCAGACC
703 CATAC-GAGTTCATTCCCAGTCTAAGCAAACAGAGTTCATTCC-AGTCTAAGATCGGACCAGACC
* * *
18125987 AAGGGTTGCAGTAGAACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC
766 GAGGGTTGCGGTAGAACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC
* * *
18126052 ACTATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
831 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGA
* *
18126111 GGGGGCCGGGGTGGGTGAGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGC
1 GGGGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
18126176 CCCCTATCCCTCACCAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
64 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
18126241 TTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTT
129 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
18126306 GTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAGGGATTACGTCTA
194 GTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * * * **
18126371 CCAAGTTTGGGGCCAGAACTCCTTCTGAAAAAATTTTGAAAAATCCCGAACCATAAAAACTTTTG
259 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
** * *
18126436 AAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACC
324 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
18126501 ATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCGTGCAAAAATATGAAGATGTGCCTAAAC
389 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
* * * * *
18126566 CCACCTACCACCATATTGATCCACGGTTTGTGCATCCCGTCTCTCTAGCC-AGCGTAGTGCCCGC
454 CCACCTAACACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGC
** *
18126630 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTCGGACCG
518 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATC-GAACG
* *
18126695 GACCGATGGTTGCGGCAGCA
582 GACCGAGGGTTGTGGCAGCA
18126715 CATACTGGGC
Statistics
Matches: 2133, Mismatches: 226, Indels: 153
0.85 0.09 0.06
Matches are distributed among these distances:
892 15 0.01
893 326 0.15
894 53 0.02
895 47 0.02
896 38 0.02
897 11 0.01
898 9 0.00
899 21 0.01
900 23 0.01
901 63 0.03
902 9 0.00
903 483 0.23
904 32 0.02
905 1 0.00
906 16 0.01
907 55 0.03
908 11 0.01
909 7 0.00
910 24 0.01
911 21 0.01
912 32 0.02
913 6 0.00
915 27 0.01
916 8 0.00
917 25 0.01
918 5 0.00
919 9 0.00
920 26 0.01
921 2 0.00
922 44 0.02
923 4 0.00
924 15 0.01
925 90 0.04
926 22 0.01
927 33 0.02
928 38 0.02
929 20 0.01
930 53 0.02
931 59 0.03
932 330 0.15
933 20 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
ACCTAACACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCGAACGGACC
GAGGGTTGTGGCAGCAGATCGGCAGCACGCAGAGGGGGACCCGCCGATCGCAGGCTTGCGCATCC
GCCCCTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCAT
TCCCAGTCTAAGCAAACAGAGTTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGA
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCA
TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGA
Found at i:18127317 original size:711 final size:713
Alignment explanation
Indices: 18125955--18127402 Score: 2116
Period size: 711 Copynumber: 2.0 Consensus size: 713
18125945 TAAGCAAACT
* * *
18125955 GAGTTCATTCCTAG-CTAAGATCAGACCAGACCAAGGGTTGCAGTAGAACATGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGAACATACTAGGCTCGGGC
* * * *
18126019 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACTATCGTCGGAGCATCGCCGGAGAACCTGAC
66 ATGTGCTGCTGCAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
*
18126084 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGTGGGTGAGCGCACATGATGTGCGATGG
131 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGTGGGTGAGCGCACATGATGTGCGATGG
*
18126149 GTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAGCTCACACCCCC
196 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAGCTCACACCCCC
* * *
18126214 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGAC
261 TCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGAC
*
18126279 ACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATG
326 ACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * ** *
18126344 CCAACAAAAATACAGGGATTACGTCTACCAAGTTTGGGGCCAGAACTCCTTCTGAAAAAATTTTG
391 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* * ** **
18126409 AAAAATCCCGAACCATAAAAACTTTTGAAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATG
456 AAAAATCCCAAACCACAAAAACTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATG
* * * *
18126474 AAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCG
521 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCA
* * * *
18126539 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCATATTGATCCACGGTTTGTGCATCCC
586 CGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCC
* * *
18126604 GTCTCTCTAGCC-AGCGTAGTG-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
651 GTCTCTATAGCCGA-CGAAGTGCCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * * *
18126666 GAGTTCATTCCCAGTCTAAGCTCGGACCGGACCGATGGTTGCGGCAGCACATACTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGAACATACTAGGCTCGGGC
* *
18126731 ATGTGCTGCTGCAGCATTTTTCTTCACCGGGGCACCATCTTCGGAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGCTGCAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * * *
18126796 TGGCGGCATTGGGGATT-CGACGATCGGGGGTGTCGGGG-GGGTGTGCGCCCATGATGTGCGATG
131 CGACGGCATTGGGG-TTCCGACGATCGGGGGGGCCGGGGTGGGTGAGCGCACATGATGTGCGATG
* * * * * *
18126859 GGTGCTGGTACTTGGCCCTTATATTGGCTCTCTATCCCTCATCGAACCTTGAGAAG-TCGCACCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAG-AGCTCACACCC
* *
18126923 CCTCAAAGATCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGCCTGAAATGGGG
259 CCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGG
*
18126988 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
18127053 TGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCTTTCCAAAAAAATTT
389 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * *
18127118 TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
454 TAAAAAATCCCAAACCACAAAAACTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCA
18127183 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
519 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
* * * *
18127248 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATC
584 CACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATC
* * * *
18127313 CCGTCTCTATGGTCGACGAAGTGCCCACCCACCCGCCCGCTCGTTTCGTCTGTTGGGTTAGGCAT
649 CCGTCTCTATAGCCGACGAAGTG--C-CCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
18127378 ACG
711 ACG
18127381 GAGTTCATTCCCAGTCTAAGAT
1 GAGTTCATTCCCAGTCTAAGAT
18127403 TGGACGGGAC
Statistics
Matches: 652, Mismatches: 77, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
711 459 0.70
712 132 0.20
713 2 0.00
715 59 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (713 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGAACATACTAGGCTCGGGC
ATGTGCTGCTGCAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGTGGGTGAGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAGCTCACACCCCC
TCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
AAAAATCCCAAACCACAAAAACTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCA
CGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCC
GTCTCTATAGCCGACGAAGTGCCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
Found at i:18127569 original size:26 final size:26
Alignment explanation
Indices: 18127533--18127585 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18127523 GTTGACTTAG
18127533 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
18127559 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18127585 G
1 G
18127586 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18128417 original size:899 final size:900
Alignment explanation
Indices: 18126659--18128506 Score: 2609
Period size: 899 Copynumber: 2.1 Consensus size: 900
18126649 GTTGGCTTAG
* * * *
18126659 GCATACGGAGTTCATTCCCAGTCTAAGCTCGGACCGGACCGATGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATACTAGG
* * *
18126724 CTCGGGCATGTGCTGCTGCAGCATTTTTCTTCACCGGGGCACCATCTTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGCTGCAGCATTTTTCTTCACAGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
18126789 ACCTGACTGGCGGCATTGGGGATTCGACGATCGGGGGTGTCGGGGGGGTGTGCGCCCATGATGTG
131 ACCTGACCGGCAGCATTGGGGATTCGACGATCGGGGGTGGCCGGGGGGTGTCCGCACATGATGTG
* * * * * ** * *
18126854 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCTCTATCCCTCATCGAACCTTGAGAAGTCGC
196 CAATGGGTGCTAGTACATGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCAC
* * **
18126919 ACCCCCTCAAAGATCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGCCTGAAAT
261 ACCCCCTCAAAGAGCAGTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGCCTGAAAT
*
18126984 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
18127049 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCTTTCCAAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* *
18127114 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
*
18127179 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTAAAAGCCATAAAAATGGCA
* *
18127244 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
586 TTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
18127309 TATCCCGTCTCTATGGTCGACGAAGTGCCCACCCACCCGCCCGCTCGTTTCGTCTGTTGGGTTAG
651 CATCCCGTCTCTATGGTAGACGAAGTGCCCACCCACCCGCCCGCTCGTTTCATCGGATGGCTTAG
* ** * * * *
18127374 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACGGGACTAAGGGTTGCAGTAGCAAGATTGGCA
716 ACATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACTAAGGGTTGCAGCAGCAAGATCGACA
* * * *
18127439 GCACGTAGAAGGGGACCCTATCGATCCCCGGCTTGTTTATCTTGCCCCTTTGGCCGACTGAGCGC
781 GCACGTAGAAGGGGACCCGATCGATCCCCGGCTTGCTTATCTTGCCCCTCTGGCCGACTAAGCGC
* * *
18127504 ACGCACGGTCGTTTCGA-GGGT-TGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
846 ACGCACGCTCGTTTC-ATAGGTAT-ACTTAGGCACACAGAGTTCATTCCCAGTCTAA
*
18127559 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATACTAGG
* * *
18127624 CTCGGGCATGTGCTGGTGTC-GTATTTTTCTTCGCAGGGGCACCATCGTCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGCTG-CAGCATTTTTCTTCACAGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
18127688 AACCTGACCGGTAGCATTGGGG-TTCCGACGATCGGGGG-GGCCGGGGGGTGTCCGCACATGTTG
130 AACCTGACCGGCAGCATTGGGGATT-CGACGATCGGGGGTGGCCGGGGGGTGTCCGCACATGATG
18127751 TGCAATGGGTGCTAGTACATGGCCCTTATATTGGCCC-CTTATCCCTCATCAAACCTCAAGAACT
194 TGCAATGGGTGCTAGTACATGGCCCTTATATTGGCCCTC-TATCCCTCATCAAACCTCAAGAACT
* **
18127815 CACACCCCCTTAAAGAGCAGTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTTTGA
258 CACACCCCCTCAAAGAGCAGTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGCCTGA
18127880 AATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
18127945 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCGAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * * * *
18128010 ACAATTTTAAAAAATCCCGAACCATAAAAATTTTCAAAAATCTTGAAAAATAAAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
* *
18128075 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTACTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTAAAAGCCATAAAAATG
* *
18128140 GCATTGGTATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *** * * *
18128205 GCGCATCCCGTCTCTCTGGTAGGCGTAGTTTTCGCCCGCCCGCCCGTTCGTTTCATCGGATGGCT
648 GCGCATCCCGTCTCTATGGTAGACGAAGTGCCCACCCACCCGCCCGCTCGTTTCATCGGATGGCT
* * * * ** *
18128270 TTGACATACGGAGTTCATTCCTAGTCTAAGATCAGA-GCAGATTGAGGGTTGTGGCAGCAGGATC
713 TAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACG-AGACTAAGGGTTGCAGCAGCAAGATC
* * * *
18128334 GATAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCTT-TC-TGCCCCTCTGGCTGACT
777 GACAGCACGTAGAAGGGGACCCGATCGATCCCCGGCTT--GCTTATCTTGCCCCTCTGGCCGACT
* ** * *
18128397 AAGCGCCCGCACGCTCGTTTCATAGGTATACTTAGGCACGTAGAGTTCATTGCCAGTTTAA
840 AAGCGCACGCACGCTCGTTTCATAGGTATACTTAGGCACACAGAGTTCATTCCCAGTCTAA
* * * *
18128458 -CGTACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
18128507 ATAGCAAGAT
Statistics
Matches: 835, Mismatches: 105, Indels: 18
0.87 0.11 0.02
Matches are distributed among these distances:
898 48 0.06
899 632 0.76
900 151 0.18
901 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATACTAGG
CTCGGGCATGTGCTGCTGCAGCATTTTTCTTCACAGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCAGCATTGGGGATTCGACGATCGGGGGTGGCCGGGGGGTGTCCGCACATGATGTG
CAATGGGTGCTAGTACATGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTCAAAGAGCAGTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGCCTGAAAT
GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
ATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTAAAAGCCATAAAAATGGCA
TTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTATGGTAGACGAAGTGCCCACCCACCCGCCCGCTCGTTTCATCGGATGGCTTAG
ACATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACTAAGGGTTGCAGCAGCAAGATCGACA
GCACGTAGAAGGGGACCCGATCGATCCCCGGCTTGCTTATCTTGCCCCTCTGGCCGACTAAGCGC
ACGCACGCTCGTTTCATAGGTATACTTAGGCACACAGAGTTCATTCCCAGTCTAA
Found at i:18128616 original size:184 final size:184
Alignment explanation
Indices: 18128280--18128618 Score: 441
Period size: 184 Copynumber: 1.8 Consensus size: 184
18128270 TTGACATACG
* ** * * * * **
18128280 GAGTTCATTCCTAGTCTAAGATCAGAGCAGATTGAGGGTTGTGGCAGCAGGATCGATAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGAGCAGACCGAGGGTTGCGACAGCAAGATCGACAGCACACA
* * * *
18128345 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCTTTCTGCCCCTCTGGCTGACTAAGCGCCCGCACG
66 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTAAGCGCCCGCACG
*
18128410 CTCGTTTCATAGGTATACTTAGGCACGTAGAGTTCATTGCCAGTTTAACGTACA
131 CTCATTTCATAGGTATACTTAGGCACGTAGAGTTCATTGCCAGTTTAACGTACA
*
18128464 GAGTTCATTCCCAGTCTAAGATCAGA-CTAGACCGAGGGTTGCGATAGCAAGATC-AGCAGCACA
1 GAGTTCATTCCCAGTCTAAGATCAGAGC-AGACCGAGGGTTGCGACAGCAAGATCGA-CAGCACA
* * * *
18128527 CAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCCGTA
64 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTAAGCGCCCGCA
* *
18128592 CGCTCATTTCGTGGGT-TGACTTAGGCA
129 CGCTCATTTCATAGGTAT-ACTTAGGCA
18128619 TGCGGAGTTC
Statistics
Matches: 131, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
183 3 0.02
184 128 0.98
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCAGAGCAGACCGAGGGTTGCGACAGCAAGATCGACAGCACACA
GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTAAGCGCCCGCACG
CTCATTTCATAGGTATACTTAGGCACGTAGAGTTCATTGCCAGTTTAACGTACA
Found at i:18130323 original size:59 final size:58
Alignment explanation
Indices: 18130231--18130526 Score: 384
Period size: 59 Copynumber: 5.0 Consensus size: 58
18130221 GCTCTTGTGT
* *
18130231 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAATTTTGATTTTCA
1 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTT-ATTTTTA
*
18130290 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTTGAAAATTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAA---TATTTTTTTGAAAATTTATTTTTA
*
18130351 AGGAAAATTGATATTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCTC-AAAAATA-TTTTTTTGAAAATTTATTTTTA
***
18130410 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTG-AAATTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTA
* * *
18130466 AGGAAAATTGGTACTTTTAACTTTTCC-CTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCTC-AAAAATA-TTTTTTT-GAAAATTT-ATTTTTA
18130527 TTTAAAGAAA
Statistics
Matches: 210, Mismatches: 15, Indels: 22
0.85 0.06 0.09
Matches are distributed among these distances:
55 1 0.00
56 43 0.20
57 6 0.03
58 6 0.03
59 88 0.42
60 7 0.03
61 44 0.21
62 15 0.07
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (58 bp):
AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTA
Found at i:18130444 original size:120 final size:116
Alignment explanation
Indices: 18130231--18130526 Score: 456
Period size: 120 Copynumber: 2.5 Consensus size: 116
18130221 GCTCTTGTGT
* *
18130231 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATA-TTTTTTTGAAATTTTGATTTTCAAGGA
1 AGGAAAATTGATATTTTCAACTTTTCCCT-AAAAATATTTTTTTTGAAATTTTGATTTTTAAGGA
18130294 AAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTTGAAAATTTATTTTTA
65 AAATTGATACTTTCAACTTTTCCTCAAAAACCC----TTTTTG-AAATTTATTTTTA
*
18130351 AGGAAAATTGATATTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTT-ATTTTTAAGGAA
1 AGGAAAATTGATATTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTTGATTTTTAAGGAA
18130415 AATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTGAAATTTATTTTTA
66 AATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTGAAATTTATTTTTA
*
18130466 AGGAAAATTGGTACTTTT-AACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 AGGAAAATTGATA-TTTTCAACTTTTCCCTAAAAATATTTTTTTT-GAAATTTTGATTTTTA
18130527 TTTAAAGAAA
Statistics
Matches: 166, Mismatches: 5, Indels: 13
0.90 0.03 0.07
Matches are distributed among these distances:
115 51 0.31
116 17 0.10
117 7 0.04
120 74 0.45
121 17 0.10
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (116 bp):
AGGAAAATTGATATTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTTGATTTTTAAGGAA
AATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTGAAATTTATTTTTA
Found at i:18130544 original size:5 final size:5
Alignment explanation
Indices: 18130534--18130616 Score: 53
Period size: 5 Copynumber: 15.6 Consensus size: 5
18130524 TTATTTAAAG
* *
18130534 AAAAT AAAAT AAAAT AAAAGT GAAAAT -AAAT AAAGAT AAAAA ATAAAG
1 AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAA-AT AAAAT A-AAAT
* *
18130582 AAAAGT AAAACA AAAAT AAAAAT AAGAT -AAAT AAA
1 AAAA-T AAAA-T AAAAT -AAAAT AAAAT AAAAT AAA
18130617 TATTAAGTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
4 7 0.11
5 27 0.44
6 24 0.39
7 4 0.06
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:18130558 original size:22 final size:22
Alignment explanation
Indices: 18130533--18130574 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
18130523 TTTATTTAAA
18130533 GAAAATAAAATAAA-ATAAAAGT
1 GAAAAT-AAATAAAGATAAAAGT
18130555 GAAAATAAATAAAGATAAAA
1 GAAAATAAATAAAGATAAAA
18130575 AATAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.17
Consensus pattern (22 bp):
GAAAATAAATAAAGATAAAAGT
Found at i:18130576 original size:17 final size:16
Alignment explanation
Indices: 18130529--18130666 Score: 68
Period size: 17 Copynumber: 8.2 Consensus size: 16
18130519 GATTTTTATT
* *
18130529 TAAAGAAAATAAAATA
1 TAAATAAAATAAAAAA
*
18130545 -AAATAAAAGT-GAAAA
1 TAAATAAAA-TAAAAAA
18130560 TAAATAAAGATAAAAAA
1 TAAATAAA-ATAAAAAA
*
18130577 TAAAGAAAAGTAAAACAA
1 TAAATAAAA-TAAAA-AA
* *
18130595 -AAATAAAA-ATAAGA
1 TAAATAAAATAAAAAA
*
18130609 TAAATAAATATTAAGTAAA
1 TAAATAAA-A-TAA-AAAA
* **
18130628 TCTAATCTAATAAATAAA
1 T-AAATAAAATAAA-AAA
18130646 TAAATAAAATAAATAAA
1 TAAATAAAATAAA-AAA
18130663 TAAA
1 TAAA
18130667 AAATTTTGAA
Statistics
Matches: 91, Mismatches: 18, Indels: 25
0.68 0.13 0.19
Matches are distributed among these distances:
14 1 0.01
15 20 0.22
16 11 0.12
17 41 0.45
18 10 0.11
19 4 0.04
20 4 0.04
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.21
Consensus pattern (16 bp):
TAAATAAAATAAAAAA
Found at i:18130591 original size:39 final size:39
Alignment explanation
Indices: 18130534--18130618 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 39
18130524 TTATTTAAAG
** *
18130534 AAAATAAAATAAAATAAAAGTGAAAATAAATA-AAGATAA
1 AAAATAAAATAAAATAAAA-CAAAAATAAAAATAAGATAA
*
18130573 AAAATAAAGA-AAAGTAAAACAAAAATAAAAATAAGATAA
1 AAAATAAA-ATAAAATAAAACAAAAATAAAAATAAGATAA
18130612 ATAAATA
1 A-AAATA
18130619 TTAAGTAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
38 9 0.23
39 24 0.62
40 6 0.15
ACGTcount: A:0.75, C:0.01, G:0.07, T:0.16
Consensus pattern (39 bp):
AAAATAAAATAAAATAAAACAAAAATAAAAATAAGATAA
Done.