Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 101 of 195
Found at i:18130645 original size:4 final size:4
Alignment explanation
Indices: 18130636--18130670 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
18130626 AATCTAATCT
18130636 AATA AATA AATA AATAA AATA AATA AATA AA-A AAT
1 AATA AATA AATA AAT-A AATA AATA AATA AATA AAT
18130671 TTTGAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.10
4 22 0.76
5 4 0.14
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:18130657 original size:13 final size:13
Alignment explanation
Indices: 18130639--18130667 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
18130629 CTAATCTAAT
18130639 AAATAAATAAATA
1 AAATAAATAAATA
18130652 AAATAAATAAATA
1 AAATAAATAAATA
18130665 AAA
1 AAA
18130668 AATTTTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAATAAATAAATA
Found at i:18130661 original size:21 final size:21
Alignment explanation
Indices: 18130557--18130670 Score: 69
Period size: 21 Copynumber: 5.4 Consensus size: 21
18130547 ATAAAAGTGA
18130557 AAATAAATAAAGATAAA-AAAT
1 AAATAAATAAA-ATAAATAAAT
* *
18130578 AAAGAAAAGTAAAA-CAA-AAAT
1 AAA-TAAA-TAAAATAAATAAAT
*
18130599 -AA-AAATAAGATAAATAAAT
1 AAATAAATAAAATAAATAAAT
** *
18130618 ATTAAGTAAATCTAATCTAATAAAT
1 A--AA-TAAATAAAAT-AAATAAAT
18130643 AAATAAATAAAATAAATAAAT
1 AAATAAATAAAATAAATAAAT
18130664 AAA-AAAT
1 AAATAAAT
18130671 TTTGAAAAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 21
0.69 0.11 0.20
Matches are distributed among these distances:
17 4 0.06
18 5 0.07
19 4 0.06
20 6 0.08
21 19 0.26
22 14 0.19
23 6 0.08
24 6 0.08
25 8 0.11
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.22
Consensus pattern (21 bp):
AAATAAATAAAATAAATAAAT
Found at i:18131538 original size:19 final size:20
Alignment explanation
Indices: 18131514--18131561 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
18131504 AAAAAAGAAA
*
18131514 AAAAAATATTCAGATAAAT-
1 AAAAAATAATCAGATAAATG
18131533 AAAAAA-AATCAGATAAATG
1 AAAAAATAATCAGATAAATG
18131552 AATAAAATAA
1 AA-AAAATAA
18131562 AATTAACAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 11 0.44
19 8 0.32
20 4 0.16
21 2 0.08
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (20 bp):
AAAAAATAATCAGATAAATG
Found at i:18131647 original size:14 final size:16
Alignment explanation
Indices: 18131628--18131678 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
18131618 AAAAATTATA
18131628 ATATAA-TA-ATAAAT
1 ATATAACTATATAAAT
18131642 ATATAACTATATAAAT
1 ATATAACTATATAAAT
* *
18131658 AAATTAC-ATATAAAT
1 ATATAACTATATAAAT
18131673 AT-TAAC
1 ATATAAC
18131679 AGAAAAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 9 0.29
15 11 0.35
16 11 0.35
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATAACTATATAAAT
Found at i:18131943 original size:1 final size:1
Alignment explanation
Indices: 18131937--18131984 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
18131927 AACATTGTCA
* * * * *
18131937 TTTTTTTTTGTTTTTTTTGTTGTTTTTTTGTTTTTTTTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
18131985 GACCAAAGCT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (1 bp):
T
Found at i:18131964 original size:20 final size:21
Alignment explanation
Indices: 18131939--18131984 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
18131929 CATTGTCATT
18131939 TTTTTTTG-TTTTTTTTGTTG
1 TTTTTTTGTTTTTTTTTGTTG
*
18131959 TTTTTTTGTTTTTTTTTTTTG
1 TTTTTTTGTTTTTTTTTGTTG
18131980 TTTTT
1 TTTTT
18131985 GACCAAAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (21 bp):
TTTTTTTGTTTTTTTTTGTTG
Found at i:18131984 original size:12 final size:12
Alignment explanation
Indices: 18131937--18131978 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
18131927 AACATTGTCA
18131937 TTTTTTTTTGTT
1 TTTTTTTTTGTT
*
18131949 TTTTTTGTTGTT
1 TTTTTTTTTGTT
18131961 TTTTTGTTTT-TT
1 TTTTT-TTTTGTT
18131973 TTTTTT
1 TTTTTT
18131979 GTTTTTGACC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 1 0.04
12 23 0.85
13 3 0.11
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (12 bp):
TTTTTTTTTGTT
Found at i:18132168 original size:42 final size:41
Alignment explanation
Indices: 18131992--18132365 Score: 568
Period size: 42 Copynumber: 9.0 Consensus size: 41
18131982 TTTGACCAAA
* * * *
18131992 GCTCCTCTAAATAGAGGCTCAACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
18132033 GCTCATCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
18132074 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
18132115 GCTCCTCTAAACAGAGGCACCACAACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATT
*
18132157 GCTCCTTTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
*
18132199 GCTCTTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
**
18132241 GCTCCTCTAAACAGAGGCACCGTGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATT
*
18132283 GCTCCTCTAAACAGAGGCACCATGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATT
**
18132325 GCTCCTCTAAACAGAGGCACCGTGACTTTGAGAAAGTAAAT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAAT
18132366 CAACAGAACT
Statistics
Matches: 312, Mismatches: 18, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
41 105 0.34
42 206 0.66
43 1 0.00
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:18132418 original size:66 final size:66
Alignment explanation
Indices: 18132307--18132431 Score: 207
Period size: 66 Copynumber: 1.9 Consensus size: 66
18132297 AGGCACCATG
**
18132307 ACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCGTGACTTTGAGAAAGTAAATCAACAG
1 ACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATCAACAG
18132372 A
66 A
*
18132373 ACTTTG-GAAAAGTAAATTGCTCCTCTAAACAGAGGCATCACGACTTTGAGAAAGTAAAT
1 ACTTTGAG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAAT
18132432 TGCTCCTCTA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
65 1 0.02
66 54 0.98
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (66 bp):
ACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATCAACAG
A
Found at i:18132460 original size:108 final size:108
Alignment explanation
Indices: 18132265--18132473 Score: 366
Period size: 108 Copynumber: 1.9 Consensus size: 108
18132255 AGGCACCGTG
*
18132265 ACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGACTTTGAGAAAGTAAATTGCTCC
1 ACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCC
**
18132330 TCTAAACAGAGGCACCGTGACTTTGAGAAAGTAAATCAACAGA
66 TCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATCAACAGA
*
18132373 ACTTTG-GAAAAGTAAATTGCTCCTCTAAACAGAGGCATCACGACTTTGAGAAAGTAAATTGCTC
1 ACTTTGAG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTC
18132437 CTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAAT
65 CTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAAT
18132474 TGCTCCTCTA
Statistics
Matches: 96, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
107 1 0.01
108 95 0.99
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (108 bp):
ACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCC
TCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATCAACAGA
Found at i:18132503 original size:150 final size:149
Alignment explanation
Indices: 18132223--18132514 Score: 512
Period size: 150 Copynumber: 2.0 Consensus size: 149
18132213 AGGCACCACG
**
18132223 ACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCGTGACTTTGAGAAAGTAAATTGCTCC
1 ACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCC
* * **
18132288 TCTAAACAGAGGCACCATGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCGTGACTT
66 TCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAACTT
18132353 TGAGAAAGTAAATCAACAGA
131 TG-GAAAGTAAATCAACAGA
*
18132373 ACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCATCACGACTTTGAGAAAGTAAATTGCTCC
1 ACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCC
18132438 TCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAACTT
66 TCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAACTT
18132503 TGGAAAGTAAAT
131 TGGAAAGTAAAT
18132515 TGCTCCTTGA
Statistics
Matches: 135, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
149 10 0.07
150 125 0.93
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (149 bp):
ACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCC
TCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAACTT
TGGAAAGTAAATCAACAGA
Found at i:18132521 original size:41 final size:41
Alignment explanation
Indices: 18132373--18132521 Score: 232
Period size: 42 Copynumber: 3.6 Consensus size: 41
18132363 AATCAACAGA
18132373 ACTTTG-GAAAAGTAAATTGCTCCTCTAAACAGAGGCATCACG
1 ACTTTGAG-AAAGTAAATTGCTCCTCTAAACAGAGGCA-CACG
18132415 ACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 ACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCA-CACG
18132457 ACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCA-ACG
1 ACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACACG
18132497 AAACTTTG-GAAAGTAAATTGCTCCT
1 --ACTTTGAGAAAGTAAATTGCTCCT
18132522 TGACAATCAT
Statistics
Matches: 103, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
40 3 0.03
41 17 0.17
42 82 0.80
43 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (41 bp):
ACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACACG
Found at i:18133770 original size:27 final size:26
Alignment explanation
Indices: 18133735--18133785 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
18133725 AATTTGAATC
18133735 TCTTTTTTCATTTTTTCATTTTTTCT
1 TCTTTTTTCATTTTTTCATTTTTTCT
* *
18133761 TCTTTCTTTCTTTTTTTCCTTTTTT
1 TCTTT-TTTCATTTTTTCATTTTTT
18133786 TTTCGTCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (26 bp):
TCTTTTTTCATTTTTTCATTTTTTCT
Found at i:18133771 original size:8 final size:7
Alignment explanation
Indices: 18133735--18133785 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
18133725 AATTTGAATC
18133735 TCTTTTT
1 TCTTTTT
18133742 TCATTTTT
1 TC-TTTTT
18133750 TCATTTTT
1 TC-TTTTT
*
18133758 TCTTCTT
1 TCTTTTT
*
18133765 TCTTTCT
1 TCTTTTT
18133772 T-TTTTT
1 TCTTTTT
*
18133778 CCTTTTT
1 TCTTTTT
18133785 T
1 T
18133786 TTTCGTCATC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 4 0.11
7 17 0.47
8 15 0.42
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (7 bp):
TCTTTTT
Found at i:18133811 original size:17 final size:17
Alignment explanation
Indices: 18133780--18133815 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
18133770 CTTTTTTTCC
18133780 TTTTTTTTTCGTCATCTT
1 TTTTTTTTTCGTCAT-TT
18133798 TTTTTTTTTC-TCATTT
1 TTTTTTTTTCGTCATTT
18133814 TT
1 TT
18133816 CATCTATTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 4 0.22
18 10 0.56
ACGTcount: A:0.06, C:0.14, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTTTTTTCGTCATTT
Found at i:18133895 original size:25 final size:25
Alignment explanation
Indices: 18133861--18133941 Score: 162
Period size: 25 Copynumber: 3.2 Consensus size: 25
18133851 AGAGTAATGT
18133861 AGCATGATTCCATTGCTTCATCATG
1 AGCATGATTCCATTGCTTCATCATG
18133886 AGCATGATTCCATTGCTTCATCATG
1 AGCATGATTCCATTGCTTCATCATG
18133911 AGCATGATTCCATTGCTTCATCATG
1 AGCATGATTCCATTGCTTCATCATG
18133936 AGCATG
1 AGCATG
18133942 CCTTCGCTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (25 bp):
AGCATGATTCCATTGCTTCATCATG
Found at i:18136978 original size:116 final size:116
Alignment explanation
Indices: 18136774--18137008 Score: 452
Period size: 116 Copynumber: 2.0 Consensus size: 116
18136764 GAAAATGATA
18136774 CACAAAGTTAAACAATCAAAATGGTTAGATAAACACCCTTTTTGTGTCTTAATTTCAGGGTATAT
1 CACAAAGTTAAACAATCAAAATGGTTAGATAAACACCCTTTTTGTGTCTTAATTTCAGGGTATAT
18136839 CTATCATTAGGTAGAAAGGGCTCTATCCTAGGTTTAGGCATTCTTAAGGTT
66 CTATCATTAGGTAGAAAGGGCTCTATCCTAGGTTTAGGCATTCTTAAGGTT
*
18136890 CACAAAGTTAAACAATCAAAATGGTTAGATAAACACCCTTTTTGTGTCTTAATTTTAGGGTATAT
1 CACAAAGTTAAACAATCAAAATGGTTAGATAAACACCCTTTTTGTGTCTTAATTTCAGGGTATAT
*
18136955 CTATCATTTGGTAGAAAGGGCTCTATCCTAGGTTTAGGCATTCTTAAGGTT
66 CTATCATTAGGTAGAAAGGGCTCTATCCTAGGTTTAGGCATTCTTAAGGTT
18137006 CAC
1 CAC
18137009 TATATGTGGT
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 117 1.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (116 bp):
CACAAAGTTAAACAATCAAAATGGTTAGATAAACACCCTTTTTGTGTCTTAATTTCAGGGTATAT
CTATCATTAGGTAGAAAGGGCTCTATCCTAGGTTTAGGCATTCTTAAGGTT
Found at i:18137964 original size:59 final size:58
Alignment explanation
Indices: 18137872--18138226 Score: 450
Period size: 59 Copynumber: 6.0 Consensus size: 58
18137862 GTTCTTGTGT
*
18137872 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTGAAATTTTGATTTTCA
1 AGGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTGAAATTTT-ATTTTTA
* * *
18137931 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAACCTTTTTTTTTAAAAATTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCT-AAAAA--TATTTTTTTGAAATTTTATTTTTA
* * *
18137991 AGAAAAATTGATATTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGAAATTTTATTTTTA
*
18138050 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTCA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAATTTT-ATTTTTA
*** * *
18138110 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAA-CCCTTTTCG-AACTTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTGAAATTTTATTTTTA
18138166 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTT-GAAATTTT-ATTTTTA
18138227 TTTAAAGAAA
Statistics
Matches: 260, Mismatches: 23, Indels: 24
0.85 0.07 0.08
Matches are distributed among these distances:
56 36 0.14
57 8 0.03
58 13 0.05
59 104 0.40
60 75 0.29
61 24 0.09
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (58 bp):
AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTTATTTTTA
Found at i:18138031 original size:119 final size:117
Alignment explanation
Indices: 18137875--18138224 Score: 449
Period size: 119 Copynumber: 3.0 Consensus size: 117
18137865 CTTGTGTAGG
* *
18137875 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTT-ATTTTTAAGGAAAATT
* *
18137940 GATACTTTCAACTTTT-CCTCAAAAACCTTTTTTTTTAAAAATTT-ATTTTTAAGA
65 GATACTTTCAACTTTTCCCT-AAAAA--TTTTTTTTGAAAAATTTGATTTTCAAGA
*
18137994 AAAATTGATATTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATTTATTTTTAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAATA-TTTTTTTGAAAATTTATTTTTAAGGAAAAT
* * *
18138058 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTCAAGG
64 TGATACTTTCAACTTTTCCCTAAAAAT-TTTTTTTGAAAAATTTGATTTTCAAGA
*** * *
18138113 AAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTCG-AACTTTATTTTTAAGGAAAATTG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAATTG
* *
18138176 ATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTT
66 ATACTTTCAACTTTTCCCT-AAAA-ATTTTTTTTGAAAAATTTGATTTT
18138225 TATTTAAAGA
Statistics
Matches: 209, Mismatches: 14, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
116 41 0.20
117 32 0.15
118 16 0.08
119 102 0.49
120 18 0.09
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.46
Consensus pattern (117 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAATTG
ATACTTTCAACTTTTCCCTAAAAATTTTTTTTGAAAAATTTGATTTTCAAGA
Found at i:18138249 original size:10 final size:9
Alignment explanation
Indices: 18138229--18138374 Score: 71
Period size: 9 Copynumber: 16.4 Consensus size: 9
18138219 GATTTTTATT
*
18138229 TAAAGAAAA
1 TAAATAAAA
18138238 TAGAATAAAA
1 TA-AATAAAA
18138248 TAAAAATGAAAA
1 T--AAAT-AAAA
18138260 TAAATAAAGA
1 TAAATAAA-A
18138270 T-AA-AAAA
1 TAAATAAAA
*
18138277 TAAAGAAAA
1 TAAATAAAA
*
18138286 GTAAA-ACAA
1 -TAAATAAAA
18138295 -AAATAAAAA
1 TAAAT-AAAA
18138304 TAAGAT-AAA
1 TAA-ATAAAA
*
18138313 TAAAT--AT
1 TAAATAAAA
18138320 TAAATAAAA
1 TAAATAAAA
**
18138329 CT-AATCTAA
1 -TAAATAAAA
18138338 TAAAT-AAA
1 TAAATAAAA
18138346 TAAAT-AAA
1 TAAATAAAA
18138354 TAAATAAAA
1 TAAATAAAA
*
18138363 CAAAT-AAA
1 TAAATAAAA
18138371 TAAA
1 TAAA
18138375 AAATTCTAAA
Statistics
Matches: 110, Mismatches: 10, Indels: 35
0.71 0.06 0.23
Matches are distributed among these distances:
7 11 0.10
8 29 0.26
9 39 0.35
10 20 0.18
11 5 0.05
12 6 0.05
ACGTcount: A:0.73, C:0.03, G:0.05, T:0.20
Consensus pattern (9 bp):
TAAATAAAA
Found at i:18138258 original size:22 final size:22
Alignment explanation
Indices: 18138233--18138275 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
18138223 TTTATTTAAA
18138233 GAAAATAGAATAAA-ATAAAAAT
1 GAAAATA-AATAAAGATAAAAAT
18138255 GAAAATAAATAAAGATAAAAA
1 GAAAATAAATAAAGATAAAAA
18138276 ATAAAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.16
Consensus pattern (22 bp):
GAAAATAAATAAAGATAAAAAT
Found at i:18138266 original size:4 final size:4
Alignment explanation
Indices: 18138257--18138378 Score: 62
Period size: 4 Copynumber: 30.0 Consensus size: 4
18138247 ATAAAAATGA
*
18138257 AAAT AAAT AAAGAT AAA- AAAT AAAGA AAAGT AAA- ACAA- AAAT AAA-
1 AAAT AAAT -AA-AT AAAT AAAT AAA-T AAA-T AAAT A-AAT AAAT AAAT
* *
18138302 -AAT AAGAT AAAT AAAT -ATT AAAT AAA- ACTAAT CTAAT AAAT AAAT
1 AAAT AA-AT AAAT AAAT AAAT AAAT AAAT A--AAT -AAAT AAAT AAAT
*
18138347 AAAT AAAT AAAT AAAAC AAAT AAAT AAA- AAAT
1 AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAAT
18138379 TCTAAAAAAA
Statistics
Matches: 94, Mismatches: 8, Indels: 32
0.70 0.06 0.24
Matches are distributed among these distances:
2 2 0.02
3 12 0.13
4 55 0.59
5 23 0.24
6 2 0.02
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:18138273 original size:27 final size:27
Alignment explanation
Indices: 18138242--18138328 Score: 71
Period size: 26 Copynumber: 3.4 Consensus size: 27
18138232 AGAAAATAGA
*
18138242 ATAAAATAAAAATGAAAATAAATAAAG
1 ATAAAATAAAAATGAAAATAAATAAAC
18138269 ATAAAA-AATAAA-GAAAAGT--A-AAAC
1 ATAAAATAA-AAATGAAAA-TAAATAAAC
* *
18138293 A-AAAATAAAAAT-AAGATAAATAAAT
1 ATAAAATAAAAATGAAAATAAATAAAC
*
18138318 ATTAAATAAAA
1 ATAAAATAAAA
18138329 CTAATCTAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 17
0.70 0.06 0.25
Matches are distributed among these distances:
22 1 0.02
23 10 0.21
24 7 0.15
25 5 0.10
26 15 0.31
27 10 0.21
ACGTcount: A:0.75, C:0.01, G:0.06, T:0.18
Consensus pattern (27 bp):
ATAAAATAAAAATGAAAATAAATAAAC
Found at i:18138276 original size:17 final size:16
Alignment explanation
Indices: 18138256--18138375 Score: 75
Period size: 17 Copynumber: 6.8 Consensus size: 16
18138246 AATAAAAATG
18138256 AAAATAAATAAAGATAA
1 AAAATAAATAAA-ATAA
*
18138273 AAAATAAAGAAAAGTAA
1 AAAATAAATAAAA-TAA
18138290 AACAA-AAATAAAAATAA
1 AA-AATAAAT-AAAATAA
18138307 GATAAATAAATATTAAATAA
1 -A-AAATAAATA--AAATAA
*
18138327 AACTAATCTAAT-AAATAA
1 AA--AAT-AAATAAAATAA
18138345 ATAAATAAAT-AAATAAA
1 A-AAATAAATAAAAT-AA
18138362 ACAAATAAATAAAA
1 A-AAATAAATAAAA
18138376 AATTCTAAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 27
0.72 0.04 0.23
Matches are distributed among these distances:
16 8 0.10
17 36 0.43
18 21 0.25
19 7 0.08
20 9 0.11
21 3 0.04
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAATAAATAAAATAA
Found at i:18138291 original size:39 final size:39
Alignment explanation
Indices: 18138234--18138318 Score: 95
Period size: 39 Copynumber: 2.2 Consensus size: 39
18138224 TTATTTAAAG
* *
18138234 AAAATAGAATAAAATAAAA-ATGAAAATAAATA-AAGATAA
1 AAAATAGAAGAAAATAAAACA--AAAATAAAAATAAGATAA
18138273 AAAATA-AAGAAAAGTAAAACAAAAATAAAAATAAGATAA
1 AAAATAGAAGAAAA-TAAAACAAAAATAAAAATAAGATAA
18138312 ATAAATA
1 A-AAATA
18138319 TTAAATAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
38 15 0.38
39 19 0.47
40 6 0.15
ACGTcount: A:0.75, C:0.01, G:0.07, T:0.16
Consensus pattern (39 bp):
AAAATAGAAGAAAATAAAACAAAAATAAAAATAAGATAA
Found at i:18138312 original size:22 final size:22
Alignment explanation
Indices: 18138234--18138376 Score: 71
Period size: 23 Copynumber: 6.2 Consensus size: 22
18138224 TTATTTAAAG
* *
18138234 AAAAT-AGAATAAAATAAAAATG
1 AAAATAAG-ATAAAAAAAAAATA
18138256 AAAATAA-ATAAAGATAAAAAATA
1 AAAATAAGATAAA-A-AAAAAATA
*
18138279 AAGAA-AAG-TAAAACAAAAATA
1 AA-AATAAGATAAAAAAAAAATA
18138300 AAAATAAGATAAATAAATATTAAATA
1 AAAATAAGATAAA-AAA-A--AAATA
* ** * *
18138326 AAACTAATCTAATAAATAAATAA
1 AAAATAAGATAAAAAAAAAAT-A
18138349 ATAAATAA-ATAAAACAAATAAATA
1 A-AAATAAGATAAAA-AAA-AAATA
18138373 AAAA
1 AAAA
18138377 ATTCTAAAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 29
0.69 0.10 0.21
Matches are distributed among these distances:
20 2 0.02
21 17 0.18
22 15 0.16
23 26 0.28
24 12 0.13
25 7 0.08
26 14 0.15
ACGTcount: A:0.73, C:0.03, G:0.04, T:0.20
Consensus pattern (22 bp):
AAAATAAGATAAAAAAAAAATA
Found at i:18138369 original size:13 final size:13
Alignment explanation
Indices: 18138339--18138375 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
18138329 CTAATCTAAT
*
18138339 AAATAAAT-AAAT
1 AAATAAATAAAAC
18138351 AAATAAATAAAAC
1 AAATAAATAAAAC
18138364 AAATAAATAAAA
1 AAATAAATAAAA
18138376 AATTCTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 8 0.35
13 15 0.65
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (13 bp):
AAATAAATAAAAC
Found at i:18138874 original size:31 final size:32
Alignment explanation
Indices: 18138828--18138898 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 32
18138818 ACTGGGCAGG
** * **
18138828 TCACC-GAAAACTTCAAGTTTGGTCGGAATTT
1 TCACCGGAAAACTTCAAACTTCGTCGGAAAAT
18138859 TCACCGGAAAA-TTCAAACTTCGTCGGAAAAT
1 TCACCGGAAAACTTCAAACTTCGTCGGAAAAT
18138890 TCACCGGAA
1 TCACCGGAA
18138899 TTTGGAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 29 0.85
32 5 0.15
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (32 bp):
TCACCGGAAAACTTCAAACTTCGTCGGAAAAT
Found at i:18139412 original size:3 final size:3
Alignment explanation
Indices: 18139406--18139447 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
18139396 AAATAAAGAT
18139406 ATA ATA ATA ATA ATA ATA ATAA ATA ATA A-A ATA CATA A-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -ATA ATA ATA
18139448 CAAAAGAAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 4 0.11
3 25 0.71
4 6 0.17
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:18139438 original size:12 final size:13
Alignment explanation
Indices: 18139342--18139447 Score: 57
Period size: 12 Copynumber: 8.5 Consensus size: 13
18139332 AAATTATAAT
18139342 ATAATAATAAATA
1 ATAATAATAAATA
18139355 TATAACTATATAAATA
1 -ATAA-TA-ATAAATA
* *
18139371 A-ATTACATATA-A
1 ATAATA-ATAAATA
* *
18139383 ATATTAACAAA-A
1 ATAATAATAAATA
* *
18139395 AAAATAA-AGAT-
1 ATAATAATAAATA
18139406 ATAATAAT-AATA
1 ATAATAATAAATA
18139418 ATAATAATAAATA
1 ATAATAATAAATA
*
18139431 ATAA-AATACATA
1 ATAATAATAAATA
18139443 A-AATA
1 ATAATA
18139448 CAAAAGAAGG
Statistics
Matches: 73, Mismatches: 11, Indels: 18
0.72 0.11 0.18
Matches are distributed among these distances:
11 12 0.16
12 28 0.38
13 18 0.25
14 5 0.07
15 3 0.04
16 7 0.10
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (13 bp):
ATAATAATAAATA
Found at i:18139449 original size:9 final size:8
Alignment explanation
Indices: 18139392--18139447 Score: 53
Period size: 9 Copynumber: 6.8 Consensus size: 8
18139382 AATATTAACA
*
18139392 AAAAAAAT
1 AAAATAAT
18139400 AAAGAT-AT
1 AAA-ATAAT
18139408 AATAATAAT
1 AA-AATAAT
18139417 AATAATAAT
1 AA-AATAAT
18139426 -AAATAAT
1 AAAATAAT
18139433 AAAATACAT
1 AAAATA-AT
18139442 AAAATA
1 AAAATA
18139448 CAAAAGAAGG
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
7 6 0.14
8 15 0.36
9 21 0.50
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (8 bp):
AAAATAAT
Found at i:18139536 original size:20 final size:21
Alignment explanation
Indices: 18139511--18139551 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
18139501 GGCTATACCC
18139511 ATTTGGGCCAGG-CCCAATTG
1 ATTTGGGCCAGGACCCAATTG
18139531 ATTTGGGCCAGGACCCAATTG
1 ATTTGGGCCAGGACCCAATTG
18139552 GGTGTCTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (21 bp):
ATTTGGGCCAGGACCCAATTG
Found at i:18141565 original size:26 final size:26
Alignment explanation
Indices: 18141535--18141585 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18141525 TTGACTTAGG
*
18141535 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCAGTCCCAGTCTAAC
18141561 CATACGGAGTTCAGTCCCAGTCTAA
1 CATACGGAGTTCAGTCCCAGTCTAA
18141586 GATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCAGTCCCAGTCTAAC
Found at i:18142398 original size:895 final size:892
Alignment explanation
Indices: 18140663--18145832 Score: 6519
Period size: 902 Copynumber: 5.8 Consensus size: 892
18140653 GTTGACTTAG
* * *
18140663 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
18140728 CTCGAGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATTGCTAGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG-TCGAGA
* * *
18140793 ACCTGACCGACGACATTGGGGTTCCGATGATCGGGGGGGCCGGGGGTGGTGTGTGCATATGATGT
130 ACC-GACCGACG-CATTGGGGTTCCGACGATC-GGGGGGCCGGGGGT-GTGTGCGCACATGATGT
* * * * *
18140858 GCGGTGGGTGCTAGTATTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
18140923 CATCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
256 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
18140988 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
18141053 GTGCATGCCAAAAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAA
386 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** ** *
18141118 AATTTTAAAAAATCTCGAA-AAGCAAAAAGTTTAAAAAATGGTGAAAAATAAAAAACGAGTCGTC
451 AATTTTAAAAAATCTCGAACCA-CAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
18141182 TTGCCATGACACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * * * *
18141247 CATTCACACACAAAAATATCAGGATATGCCTAAACCCACCTACCACCCCATCAATCCACGGCTCG
580 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTG
* * *
18141312 CGCATCCTGTCTCTCTGGCCGGCGGAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
645 CGCATCCCGTCTCTCTGGCCGACGGAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * * * * * * *
18141377 ACACGAAGTTCATTCCCAGTCTAAGA-TCAGACCGGATCAAGGGTTGCAGTAGCAAGATCGGCAG
710 ATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGACCAAGGGTTACGGCAGTAGGATCGGCAG
* * * * * * * ** * * *
18141441 CACACAGAGGGAGACCTGGCCAATCCCCGGCTTGCGCATGCCTTCCATCTGGCCGGCTGAGCACG
774 CACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACC
* *
18141506 CGTACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
18141560 CCATACGGAGTTCAGTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
18141625 CTCGGGCATGTACTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-GAGA
* *** * *
18141690 ACCTGATCGGTTACATTGGGGTTCCGACAATCGGGGGGGCCGGGGGTGTGTGTGCACATGATGTG
130 ACC-GA-CCGACGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGTGTGTGCGCACATGATGTG
*
18141755 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
18141820 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
18141885 GGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCTATTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
18141950 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCCAGTTTGGGGCCAAAACTCCTT-CTAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
18142014 AATTTAAAAAATCTCGAACCACAAAAAGTTTCGAAAATCATAAAAAATAGAAAACGAGTCATCTT
452 ATTTTAAAAAATCTCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
18142079 GCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
18142144 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCCATCAATCCACGGCTCGCG
582 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCG
* * * * *
18142209 TATCCTGTCTGTCTGGCCGACGGAGTGCCCGCCCACCCGCTTGTTTCATCGGTTGGGTTAGGCAT
647 CATCCCGTCTCTCTGGCCGACGGAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * *
18142274 ACGGAGTTCATTCCTAGTCTAAGATTGAATCAGACCAAGGGTTACGGCAATAGGATCGGTAGCAC
712 ACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTACGGCAGTAGGATCGGCAGCAC
* * *
18142339 GCAGAGGGGGACCCGATCGATCCCTGGCTCGCGCATCCCGCCCCTCTGGCTGACTGAGCACCCGC
777 GCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGC
* * * *
18142404 ACGCTCGTTTCGTGGCTTAACTTAGGTATACAGAGTTCATTCCCAGTCTAA
842 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
18142455 TCATACGAAGTTCATTCCCATTCTAAGATCGGACTGGACCGAGGGTTGTGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
18142520 CTCGGGCATGTGCTGGTCCAATATTTTTCTTCGTCGGGG---------C--AGCATCGTC--G--
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGAGAA
* * * *
18142570 --GA-C-A-GCATTGGGGTTTCGATGATCGGGGGGAC-GGTGTGTGTGCGCACATGATGTGCGAT
131 CCGACCGACGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGTGCGCACATGATGTGCGAT
*
18142629 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
18142694 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
261 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
18142759 ACACTTTTTTCCAATGGTCACAAAATCTTGTAGACTTCGAGTATTTAGCTAAATTTTTTTGTGCA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
18142824 TGCCAAAAAAAAAACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TT
391 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
18142888 TAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
456 TAAAAAATCTCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
18142953 TGAAACTTCACGCGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGG
521 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * *
18143018 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
586 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATC
* * *
18143083 CCGTCTCTCTAGCCGACGTAGTGCCCGCCCACCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
651 CCGTCTCTCTGGCCGACGGAGTGCCCGCCCA--------CCCGCTCGTTTCATCGGTTGGCTTAG
* * * * * *
18143148 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGA-GGCAGCATGATCGGC
708 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTT-ACGGCAGTAGGATCGGC
* * * * * * **
18143212 AGCATGCAGAGGGTGACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGGG
772 AGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCA
*
18143277 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * * *
18143333 GCATACGAAGTTCTTTCCCAACCGAAGATCGGACGAGACCGAGGGTTACAGTAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
18143398 CTCGGGCATGTGCTGGTGC--CATTTTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGTCAGA
66 CTCGGGCATGTGCTGGTGCAGCA--TTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-GA
* * *
18143461 GAACCGACCGACGGCATTAGGGTTTCGGCGATCGAGGGGGCCGGGGG-GTGTGCGCACATGATGT
128 GAACCGACCGAC-GCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGTGTGTGCGCACATGATGT
*
18143525 GCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
18143590 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTCAAGTGTCTGAAA
256 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
18143655 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
18143720 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
386 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
18143785 AATTTTAAAAAATCTCG-ATCAGGAAAAGGTTGT-GAAAATCATGAAAAATAGAAAACGAGTCGT
451 AATTTTAAAAAATCTCGAACCA-CAAAAAGTT-TCGAAAATCATGAAAAATAGAAAACGAGTCGT
*
18143848 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
18143913 GCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTGCC-CCCCTATCGATCCACGACT
579 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCC-ATCGATCCACGGCT
* ** * * *
18143977 TGCGCGTCCCGTCTCTCTGGCCGGTGTAGTGCCCGCACGCCTGCCCGCCCGCTCGTTTCATTGGT
643 TGCGCATCCCGTCTCTCTGGCCGACGGAGT----G--C-CC-GCCCACCCGCTCGTTTCATCGGT
* * * **
18144042 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA-TAAGACCGGACCAAGGGTTGTGGCAGTA
700 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGACCAAGGGTTACGGCAGTA
* * *
18144106 GGATTGGCAGCCCGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCT
764 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC-
* * * *
18144171 G-CTGAGCGCCCGCACGCTCATTTCGTGTGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAA
828 GACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
18144235 GCAAATGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * * *
18144300 CTTGGGCATGTGCTGGTGCTGCATTTTTCTTTGCCAGGGAACTATCGCTGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG-TCGAGA
** *
18144365 ACCTGACCGACGGCATTGGGGTTCCGGTGATCTGGGGGCCGGGGG-GTGTGCGCACATGATGTGC
130 ACC-GACCGAC-GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGTGCGCACATGATGTGC
*
18144429 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
18144494 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAATG
258 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
18144559 GGGTCACTTTTTTCAAATGGGCACAAAATCTTGTACACTTCGAGTTCTCAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
18144624 GCATACCAAAAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
388 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
18144689 TTTTAAAAAATCCCAAACCACAAAAAGTTTCCAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
453 TTTTAAAAAATCTCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
18144754 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATGAAGATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
18144819 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGGGC
583 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGC
* ** * * * *
18144884 ATTCTATCTCTCTGGCCGACGTAGAGCCCGCCCGCTCGCCTGCCCGCTCATTTCATCGGTTGGGT
648 ATCCCGTCTCTCTGGCCGACG--GAG--TGCCCG--C-CC-ACCCGCTCGTTTCATCGGTTGGCT
* * * ** *
18144949 TAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACTGAGGGTTACGGCAATAGGATCG
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTACGGCAGTAGGATCG
* * * *
18145014 GTAGCACACAGAGGGGGACCCGATCGATCCCTGGCTAGCGCATCCCGCCCCTCTGGCCGACTGAG
770 GCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* *
18145079 CACCCGCACGCTCGTTTCGTGGCTTGACTTAGGTATACGGAGTTCATTCCCA-T-T--
835 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
18145133 -C-TA---AG---------A-TC--AGA-CTG----GACCGAGGGTTGTGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
18145176 CTCGGGCATGTGCTGGTCCAATATTTTTCTTCGTTGAGG------CA-C----CATCGTC--G--
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGAGAA
* * * *
18145226 --GA-CG--GCATTGGGGTTTCGCCGATCGGGGGGCCGGGGGGGTGTGCGCACATGTTGTGCGAT
131 CCGACCGACGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGTGCGCACATGATGTGCGAT
*
18145286 GGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
18145350 ACTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAATGGGG
261 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
18145415 -CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAGTTTTTTTGTGCA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
18145479 TGCCAATAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
391 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** * *
18145544 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
456 TAAAAAATCTCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
18145609 TGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCTTTGG
521 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
18145674 CAGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTC
586 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATC
* * * * *
18145739 CCGTGTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCACGCTCGTTTCGTCGGTTGGCTTAG
651 CCGTCTCTCTGGCCGACGGAGT----GCCCGCCC--AC-C-CGCTCGTTTCATCGGTTGGCTTAG
18145804 GCATACGGAGTTCATTCCCAGTCTAAGAT
708 GCATACGGAGTTCATTCCCAGTCTAAGAT
18145833 CAGATTGGAC
Statistics
Matches: 3765, Mismatches: 428, Indels: 205
0.86 0.10 0.05
Matches are distributed among these distances:
849 2 0.00
850 5 0.00
851 1 0.00
852 360 0.10
853 122 0.03
854 49 0.01
856 2 0.00
857 2 0.00
862 1 0.00
864 1 0.00
865 5 0.00
870 473 0.13
871 14 0.00
872 16 0.00
876 60 0.02
878 265 0.07
879 1 0.00
880 2 0.00
881 4 0.00
883 2 0.00
884 10 0.00
886 1 0.00
887 1 0.00
889 9 0.00
892 1 0.00
893 2 0.00
895 466 0.12
896 259 0.07
897 156 0.04
898 4 0.00
899 2 0.00
900 21 0.01
901 281 0.07
902 1118 0.30
903 35 0.01
904 4 0.00
906 1 0.00
908 1 0.00
909 2 0.00
910 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGAGAA
CCGACCGACGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGGAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTACGGCAGTAGGATCGGCAGCACGCAG
AGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:18147437 original size:26 final size:26
Alignment explanation
Indices: 18147407--18147459 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18147397 GTTGGCTTAG
18147407 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18147433 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18147459 G
1 G
18147460 ATCAGACCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18149261 original size:865 final size:865
Alignment explanation
Indices: 18147433--18151562 Score: 5410
Period size: 865 Copynumber: 4.7 Consensus size: 865
18147423 CCCAGTCTAA
* *
18147433 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCGGCAAG-ACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTCCGGACCGAGGGTTGCGGC-AGCACATGCTGG
* * * * ** * **
18147497 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGCCACCATCGTC-GAAACATCACCGGA
65 GCTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCAGAGA-ATCATTGGA
* ** * *
18147561 GAACCTGAACGATGGGATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* **
18147626 GCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * * *
18147691 TACCACCTTAAAGTGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
18147756 TGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTAGCTGAATTGTTTT
324 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT-TTTT
* *
18147821 GTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
** *
18147886 AATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTC
453 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
**
18147950 TTGCCACAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
18148014 CTTTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
18148079 CACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCTCGTTTCGTTGGTTGGCTTAGGCATAC
648 CACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* *
18148144 GGAGTTCATTCCTAGTCTAAGATCAGACTAGATTGAGGGTTGCAGTAGTAGGATTGGCAGCACCC
713 GGAGTTCATTCCTAGTCTAAGATCAGACTAGATCGAGGGTTGCAGTAGTAGGATCGGCAGCACCC
*
18148209 AGAGGGGGA-CCGACCGATCCCCAGCTTGCGCATCCCACCTCTCTGGCCGACTGAGCGCTCACAC
778 AGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCACCTCTCTGGCCGACTGAGCGCCCACAC
*
18148273 GCTCATTTTACGGGTTGACTTAG
843 GCTCATTTCACGGGTTGACTTAG
* * *
18148296 GCATACGAAGTTCATTCCCAGTCTAAGATCAGTCCTGGACCGAGTGTTGCGGCAGCACATGCTGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTCC-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
18148361 GCTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGTACAATCACCAGAGAATCATTTGAG
65 GCTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCAGAGAATCATTGGAG
* *
18148426 AACCTGACCGGCGGAATTGGGGTTCTGACGATCGGGGGGGCCGGGGTGGTGTGTGCACATGATGT
130 AACCTGACCGGCGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGT
18148491 GCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
18148556 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
18148621 TGGAAACATTTTTTTCAAATGGTCATAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTA
324 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTG
* *
18148686 TGCATGCCAACAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* *
18148751 ATTTTAAAAAATCCTGAACCTTAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCCCGAACCATAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
18148816 TACCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
18148881 TTTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
18148946 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCTCGTTTCGTTGGTTGGCTTAGGCATACG
649 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* *
18149011 GAGTTCATTCCTAGTCTAAGATCAGACTAGATTGAGGGTTGCAGTAGTAGGATTGGCAGCACCCA
714 GAGTTCATTCCTAGTCTAAGATCAGACTAGATCGAGGGTTGCAGTAGTAGGATCGGCAGCACCCA
*
18149076 GAGGGGGA-CCGACCGATCCCCAGCTTGCGCATCCCACCTCTCTGGCCGACTGAGCGCTCACACG
779 GAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCACCTCTCTGGCCGACTGAGCGCCCACACG
*
18149140 CTCATTTTACGGGTTGACTTAG
844 CTCATTTCACGGGTTGACTTAG
* *
18149162 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTCCGGACCGAGTGTTGCGGCAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTCCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
18149227 CTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGTACAATCACCAGAGAATCATTTGAGA
66 CTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCAGAGAATCATTGGAGA
* *
18149292 ACCTGACCGGCGGAATTGGGGTTCTGACGATCGGGGGGGCCGGGGTGGTGTGTGCACATGATGTG
131 ACCTGACCGGCGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTG
18149357 CGATAGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
18149421 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
18149486 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACATTCTTGAGTTTTTAGCTGAATTTTTTT
325 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TTGAGTTTTTAGCTGAA-TTTTTT
*
18149551 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACT-CTTTCTGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
* * *
18149615 AAATTTTTAAAAATCCTGAACCATAAAAAGTTTT-GAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
18149679 CTTGCCATGAAACTTCTCGTGAACGCTTAAAGGACCATTGTATAAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
18149744 GCATTGGCACT-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATTCACGGCT
582 GCATTGGCA-TGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * * * *
18149808 TGTGCATCCCGCCTCTCTGGCTGGCGTAGTGCCTGCCCGCCCACCCACCCACTCGTTTCGTCGGT
646 TGCACATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCG--------TCCGCTCGTTTCGTCGGT
* * * * * *
18149873 TGACTTAGGCATATGGAGTTCATTCCTAATCTAAGAT-ATGACCAGATCGAGGGTTACGGTAGTA
699 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA-GACTAGATCGAGGGTTGCAGTAGTA
* * * * **
18149937 GGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCATCC-GTCTGGTT
763 GGATCGGCAGCACCCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCA-CCTCTCTGGCC
* * * **
18150001 GGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAG
827 GACTGAGCGCCCACACGCTCATTTCACGGGTTGACTTAG
* *
18150040 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-CGAACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-TCCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
18150104 GCTCGGGCATGTGCTAGTGTCACATTTTTCTTC-ACTGGGGCACCATCGCCAGAGCACGATTCCC
65 GCTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTC-GGGGCACCATCACCAGAG-A--A-T---
* * *
18150168 GAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGTGGGGTCAGGGGGGT
122 ----CAT--T-GGAGAACCTGACCGGCGGAATTGGGGTTCCGACGATCGG-GGGGGCCGGGGGGT
** * * *
18150233 GCACGCACATGATGTGTGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
179 GTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
18150298 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
244 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
18150363 TTAAAGTGTCCGAAAT-GAGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGATTTT
309 TTAAAGTGTCTGAAATGGA-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* *
18150427 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGGGCCA
373 TTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * ** * *
18150492 AAACTCCTTCCAAAAAAATTTTAAAAGATCCCGAACCGCAAAAAGTTTT-GAAAATCATGAAAAA
437 AAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTCAAAAATCGTGAAAAA
* * * *
18150556 TAGAAAACGAGTCATCTTGCGATGAAACTTCATGTGAAGGCTTAAGGGACCATTTTATGAATTTA
502 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
18150621 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
567 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCT
* * *
18150686 ATCGATCCACGGCTTGCGCTTCCCGTGTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCG
632 ATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGT----CCG
* * * * *
18150751 CTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAAC-GGACCGA
685 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-AGACTAGATCGA
** * * * * ** ** *
18150815 GGGTTGTGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATTGATCCCTGGCTTGTGCATCC
749 GGGTTGCAGTAGTAGGATCGGCAGCACCCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCC
* ** * * ** *
18150880 CACCCCTCTGGCCGGTTGAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAG
814 CACCTCTCTGGCCGACTGAGCGCCCACACGCTCATTTCACGGGTTGACTTAG
*
18150932 GCATACGGAGTTCTTTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCCAAGATCGGACCAGGC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--CAGT-C-----CGG---A--C
* * ** **
18150997 CGAGGGTTGCGGTAGCACATGCTGGGCTC-GAGCATGTGTTGGTGCTGTATTTTTCTTCACCGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCATATTTTTCTTCGTCGGG
* * ** * * * * *
18151061 GCACCATCACCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCAACGATCGAGGGG
104 GCACCATCACCAGAGAATCATTGGAGAACCTGACCGGCGGAATTGGGGTTCCGACGATCGGGGGG
* * * *
18151126 GCTGGGGGGTGTACGCACATAATGTGCGAT-GAGTGCTGGTACTTGGCCCTTATAATGGCCCCCT
169 GCCGGGGGGTGTGCGCACATGATGTGCGATAG-GTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
18151190 ATCCCTAATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
18151255 GTCAGTAGCCATTAAAGTGTCTGAATTGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
** *
18151320 CTTCAAGTTTTTAGCT-ACATTTTTATGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
363 CTTTGAGTTTTTAGCTGA-ATTTTT-TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
18151384 -TTTCGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAA-ACCGAACCATAAAAAG-TTTCAAA
426 GTTT-GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTCAAA
* * * **
18151445 AATCATGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGTAGGCTTAAGGGACTGT
490 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
18151510 TGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
555 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
18151563 GTGTCTAAGA
Statistics
Matches: 2921, Mismatches: 250, Indels: 154
0.88 0.08 0.05
Matches are distributed among these distances:
863 35 0.01
864 331 0.11
865 664 0.23
866 417 0.14
867 1 0.00
869 6 0.00
876 1 0.00
877 93 0.03
878 165 0.06
879 4 0.00
881 1 0.00
882 1 0.00
888 1 0.00
889 3 0.00
890 1 0.00
891 3 0.00
892 524 0.18
893 145 0.05
894 2 0.00
896 5 0.00
897 1 0.00
898 2 0.00
900 3 0.00
901 125 0.04
902 27 0.01
903 244 0.08
904 37 0.01
905 1 0.00
906 1 0.00
907 5 0.00
913 2 0.00
914 1 0.00
915 1 0.00
916 1 0.00
917 1 0.00
918 65 0.02
919 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (865 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGTCCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCAGAGAATCATTGGAGA
ACCTGACCGGCGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCATAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCTAGTCTAAGATCAGACTAGATCGAGGGTTGCAGTAGTAGGATCGGCAGCACCCAGA
GGGGGACCCGACCGATCCCCAGCTTGCGCATCCCACCTCTCTGGCCGACTGAGCGCCCACACGCT
CATTTCACGGGTTGACTTAG
Found at i:18149670 original size:27 final size:26
Alignment explanation
Indices: 18149613--18149670 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
18149603 CTCTTTCTGA
* **
18149613 AAAAATTTTTAAAAATCCTGAACCAT
1 AAAAAGTTTTAAAAATCCTGAAAAAT
* *
18149639 AAAAAGTTTTGAAAATCGTGAAAAAT
1 AAAAAGTTTTAAAAATCCTGAAAAAT
18149665 AGAAAA
1 A-AAAA
18149671 CGAGTCGTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.55, C:0.09, G:0.10, T:0.26
Consensus pattern (26 bp):
AAAAAGTTTTAAAAATCCTGAAAAAT
Found at i:18151975 original size:13 final size:12
Alignment explanation
Indices: 18151940--18151975 Score: 63
Period size: 12 Copynumber: 2.9 Consensus size: 12
18151930 GTGCTGGCAC
18151940 TTGGCCCTTATA
1 TTGGCCCTTATA
18151952 TTGGCCCTTATA
1 TTGGCCCTTATA
18151964 TTGGCTCCTTAT
1 TTGGC-CCTTAT
18151976 CCCTCATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 17 0.74
13 6 0.26
ACGTcount: A:0.14, C:0.25, G:0.17, T:0.44
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:18152631 original size:26 final size:26
Alignment explanation
Indices: 18152602--18152654 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18152592 GTTGACTTAG
18152602 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
* *
18152628 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
18152654 G
1 G
18152655 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:18153382 original size:26 final size:26
Alignment explanation
Indices: 18153346--18153398 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18153336 GTTGGCTTAG
* *
18153346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
18153372 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
18153398 G
1 G
18153399 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:18154248 original size:26 final size:26
Alignment explanation
Indices: 18154218--18154270 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18154208 GTTGACTTAG
* *
18154218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGCCTAA
*
18154244 GCATACGGAGTTAATTCCTAGCCTAA
1 GCATACGGAGTTAATTCCCAGCCTAA
18154270 G
1 G
18154271 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGCCTAA
Found at i:18155133 original size:26 final size:26
Alignment explanation
Indices: 18155097--18155147 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18155087 GTTGACTTAG
18155097 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
*
18155123 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACCGAGTTCATTCCCAGTCTA
18155148 CGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:18156918 original size:26 final size:26
Alignment explanation
Indices: 18156880--18156932 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18156870 GTTGACTTAG
* *
18156880 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
18156906 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
18156932 G
1 G
18156933 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:18157027 original size:880 final size:877
Alignment explanation
Indices: 18153336--18158617 Score: 5496
Period size: 880 Copynumber: 6.0 Consensus size: 877
18153326 CATTTCGTCG
* * **
18153336 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
* * * ** * * * * *
18153401 CGGATCGGACCAAGGGTTGCGGTAGCACATGCTGAGCTTGGGCATGTGCTGGTGCCGCATTTTTC
66 CAGACCAGACCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTC
* * ** ** * * ***
18153466 TTCATCGGGGCACCAT-C-G--CC--GGA-GCATCACCGGAG-AAC--CTGAACGGTGG-CATTG
131 TTCGTCGGGGCACCATCCAGATCCAACGACG-A-CATTGG-GTTTCGAC-GATCGGGGGACCGGG
** * * * *
18153520 GGGTGTACGCACATGATGTGCGATAGGTGCTGGAAGTT-GCCCTTTATATTGGCCCCCTATCCCT
192 GGGTGTGTGCACA-GATGTGTGATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCT
* *
18153584 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGT
255 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGT
** * *
18153649 AGCCATTACTGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
320 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
18153714 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGG
385 GTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG
** * * ** * * *
18153779 GCCAAAAAGCCTTCCGAAAAAATTTAAAAAAATCCCAAATTGCAAAATGTTTCAAAAATCATGAA
450 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTAAAAAATCATAAA
* *
18153844 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAAT
514 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
18153909 TTACAAGCCATAAAAATAGCATTGGCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
579 TTACAAGCCATAAAAATGGCATTGGCAGCA-A-AAATATGAAGATGTGGCTAAACCCACCTACCA
* * * * * *
18153973 CCCTATCGATCCACGGCTTGCGCATCCTGTCTCTTTGG-TCGGCGTCGTGCCTGCCCGCCCGCCC
642 CCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTACCCGCCTGCCCGCCC
** * *
18154037 AACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGA
705 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATC-GACTGGA
* * ** * * ** ** * * * *
18154102 CAGAGGG----G-CAGCAGGATCGGTAGTACGCAGAAAGACACTC-AGCTGATTCCCAACTTGCG
768 CCGAGGGTTACGATAGCAGGATCGACAGCACGTAGAGGGGGACCCGATC-GATCCCCAACTTACG
* * * * * * *
18154161 CATCCCGTCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCATGG
832 CATCCCGCCCCTCTAGCCCGCTGAGCGCCCGCAC-CTCATGTCGTGC
* *
18154208 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTCCTAGCCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
* * * * * * *
18154273 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
66 CAGACCAGACCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTC
* * * * * ** *
18154338 TTCATCGGGGCACCAT-C-G-T-C--GGACGGCATTGGGGTTCCAGCGATCGGGGGGGTCGAGGG
131 TTCGTCGGGGCACCATCCAGATCCAACGACGACATTGGGTTTCGA-CGATC-GGGGGACCGGGGG
* *
18154397 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
194 GTGTGTGCACA-GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
18154462 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
258 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGC
*
18154527 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTT
323 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * *
18154592 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACGTCTCCCATGTTTGGGGCC
388 TTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC
* * * * *
18154657 AAAACGCCTTCC-AAAAAACTTTAAGAAAATCCCAAACCGCAAAAAGTTTCAAAAAT-AGTGAAA
453 AAAACTCCTTCCGAAAAAATTTTAA-AAAATCCCGAACCG-AAAAAGTTTAAAAAATCA-TAAAA
18154720 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
515 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
18154785 TACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGACTAAACCAACTTACCACC
580 TACAAGCCATAAAAATGGCATTGGCA-GCAAAAATATGAAGATGTGGCTAAACCCACCTACCACC
* * * * * *
18154850 CTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCTGGCATAGTGCCCGCCCGCCCGCCCTCC
644 CTATCGATCCAC-GCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTACCCGCCTGCCCGCCCGCC
** * * **
18154915 CATTCGTTTCGTCGGTTGGCTTAGGCATA-AGGACTTCATTCCCAGTCTAAGATTAGACCAGACC
708 CGCTCGTTTCGTCGGTTGGCTTAGGCATACA-GAGTTCATT-CCAGTCTAAGA-TCGACTGGACC
* * * ** * ** *
18154979 AAGGGTTAC-AGTAACAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCTCGGCTTAAGCA
770 GAGGGTTACGA-TAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCAACTTACGCA
* * * * * ** * *
18155043 TTCCGCCCCTCT-GGCGGTTGAGCACCCGCACGCTTGTTTCGTGG
834 TCCCGCCCCTCTAGCCCGCTGAGCGCCCGCAC-CTCATGTCGTGC
* * *
18155087 GTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTACGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
* ** * * * * ** * ** * * * *
18155152 CGGACCAGACTGA-CGATGAAGGCAGTAGATTTTGGGCTCAGGCATGTGCTGGTGCCGCATTTAT
66 CAGACCAGACCAAGGGTTG-CGACAACACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTT
* * * *
18155216 CTTCGTCGGGGCACCATCGCTGGTGTATCGCCGGAGAACCTGACCGGCGGCATTGGAGTTCCGGC
130 CTTCGTCGGGGCACCATC-C---AG-AT--CC----AA-C-GA----CGACATTGG-GTTTCGAC
* *
18155281 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
177 GATC-GGGGGACCGGGGGGTGTGTGCACA-GATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
18155346 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
240 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
18155411 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
305 AGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
18155476 TCTTGTACACTTCGAGTTTTTAGCCGAATTGTTTTGTGCGAGCCAACAAAGATACAAGGATCACG
370 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACA
* * *
18155541 TCTACCAAGTTTGGGACCAAAACTCGTTCC-AAAAAACTTTTAAAAAATCCTGAACCGTAAAAAG
435 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCG-AAAAAG
** * **
18155605 TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTAACATGAAACTTCACGTGAAGGCTTAAG
498 TTTAAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * * *
18155670 GGACCTTTCTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
563 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAAAAATATGAAGATGTGGC
* * ** * * *
18155735 TAAACCAACTTACCACTTTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCTGGCGTAGTGC
627 TAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTAC
* *
18155800 CCGCCCGCCCGCCCGCCCTCCCGTTCGTTTCGTCGGTTGGCTTAGGCATA-AGGAGTTCATTCCC
691 CCGCCTGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA-GAGTTCATT-CC
** * * * * * *
18155864 AGTCTAAGATCAGACCAGACCAAGGGTTGC-ATTAACAAGATCGGCAGCACGCAGAGGGGGACCC
750 AGTCTAAGATC-GACTGGACCGAGGGTTACGA-TAGCAGGATCGACAGCACGTAGAGGGGGACCC
* * ** * * * * * ** *
18155928 GGTCGATCCCCGACTTAAACATCCCGCCCCTCT-GGCGGTTGAGCACCAGCACGCTTGTTTCGTT
813 GATCGATCCCCAACTTACGCATCCCGCCCCTCTAGCCCGCTGAGCGCCCGCAC-CTCATGTCG-T
18155992 G-
876 GC
* *
18155993 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTACG-AT-C-G-G---A--CCAAGCC--A-A-
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
** * * * * ** * *
18156045 C-GA--TTA-C------T--G-CAGCAGATTCTAGGCTCAAGCATGTGCTGGTGCCACATATTTC
66 CAGACCAGACCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTC
*
18156097 TTCATCGGGGCACCATCGCAGAAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTTCGACG
131 TTCGTCGGGGCACCATC-C---AG-ATC--C-----A----A-CGACGACATT-GGGTTTCGACG
* * *
18156162 ATCGGGGCGACCGGGGGGTGTATGCACAGGATGTGTGATGGGTGCTGGTACTTAGCCATTATATT
178 ATCGGGG-GACCGGGGGGTGTGTGCACA-GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
* *
18156227 GGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
241 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
18156292 GGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAAT
306 GGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * * *
18156357 ATTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATGCACGCCAACATAAATACAAGGATCACAA
371 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACAT
* * *
18156422 CTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAGTTT
436 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTT
* * * * *
18156487 AAAAAATGATGAAGAATAGAAAACAAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGA
501 AAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
18156552 CCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGCAAAAATATGAAGATGTGGCTAA
566 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAAAAATATGAAGATGTGGCTAA
*
18156617 ACCCACCTACCACCCTCTCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTACCCG
630 ACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTACCCG
* * * *
18156682 CCTGCCCGCCCACCCGCTCGTTTTGTCGATTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAC
694 CCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC-AGTCTAAG
* * * * * *
18156747 ATCGGACAGGACCAAGGGTTACGACAGCAAGATCGACAGCATGTAGAGGGGCACCCGGATCGATC
758 ATC-GACTGGACCGAGGGTTACGATAGCAGGATCGACAGCACGTAGAGGGGGACCC-GATCGATC
* *** * * * * * *
18156812 CTCGGTTTACGTATTCTGCCCCTCTGGCCCGCTGAGCGCCCGCACGCTCGTTTCGTGC
821 CCCAACTTACGCATCCCGCCCCTCTAGCCCGCTGAGCGCCCGCAC-CTCATGTCGTGC
* *
18156870 GTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
** * * * * *
18156935 TGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
66 CAGACCAGACCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTC
* *
18157000 TTCGTCGGGGGACCAT-C-G-T-C-A-GACGACATTTGGGTTCCGAC-ATCGGGGGATCCGGGGG
131 TTCGTCGGGGCACCATCCAGATCCAACGACGACA-TTGGGTTTCGACGATCGGGGGA-CC-GGGG
* *
18157058 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
193 GGTGTGTGCACA-GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * ** *
18157123 TCAAACCTTGAGAACTCACACCCCCTTCAAGAGCATTTTAGATTTTACAGGTTTACTATCAATAG
257 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAG
*
18157188 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
322 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
18157253 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTACATCTACCAA-TTTGGGGC
387 TTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
* * *
18157317 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATTAAAA
452 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTAAAAAATCATAAAAA
* * *
18157382 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCAATGTGTGAATTT
516 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
18157447 ACAAGCCATAAAAATGGCATTGGCA-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
581 ACAAGCCATAAAAATGGCATTGGCAGCA-A-AAATATGAAGATGTGGCTAAACCCACCTACCACC
* *
18157511 CTATCGATCTATGGCTTGCGCATCCCGTCTCTCTGGCTGGC---GTA---G--TGCCCGCCCGCC
644 CTATCGATCCA-CGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTACCCGCCTGCCCGCCCGCC
* * *
18157568 TGCTCGTTCCGTCGGTTGGCTTAGGCATA-AGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT
708 CGCTCGTTTCGTCGGTTGGCTTAGGCATACA-GAGTTCATT-CCAGTCTAAGATC-GACTGGACC
* * *
18157632 GAGGGTTACGGTAGCAGGATCGACA-CACGCAGAGGGGGACCCGATCGATCCCCAACTTGCGCAT
770 GAGGGTTACGATAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCAACTTACGCAT
* * * * * *
18157696 CCCGCCCCTCTAGTCGGTTGAGTGCCCGTACCTCATGTCGTGG
835 CCCGCCCCTCTAGCCCGCTGAGCGCCCGCACCTCATGTCGTGC
* *
18157739 GTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
* * * *
18157804 CAGATCAGACCAAGGGTTGCGGCAACACATGCTGGGCTCGGGCTTGTACTGGTGTCACATTTTTC
66 CAGACCAGACCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTC
*
18157869 TTCGTCGGGGCACCATCGCCTGAGCATCACCGAAGAAACTGACCGGCGACATTGGGTTTCCGGCG
131 TTCGTCGGGGCACCAT--CC--AG-AT--CC-----AAC-GA----CGACATTGGGTTT-CGACG
* * * * *
18157934 ATCGGGGGGGTCGGGGAGGGGGTGTGCACACATGATGTGCAATTGGTGCTGGTACTTGGCCCTTA
178 ATC--GGGGGACCGGG-GGGTGTGTGCACAGATG-TGTG--ATGGGTGCTGGTACTTGGCCCTTA
*
18157999 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
237 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
18158064 TACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTGTTTCAAATGGTCAC
302 TACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT-TTTCAAATGGTCAC
* * *
18158128 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCTAAAAAAAATACATGGAT
366 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGAT
* * * *
18158193 CATATCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCAAAAA
431 CACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-GAAA
* ** *
18158258 AAGTTTCAAAAATTTTAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
495 AAGTTTAAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
18158323 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
560 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAAAAATATGAAGATGT
* * ** *
18158388 -GCTAAAACCCACCTACCACCCTATCGATCCACGACTTGCACATCCCGTTTCTCCAGCCGGCGTA
624 GGCT-AAACCCACCTACCACCCTATCGATCCACG-CTTGCGCATCCCGTCTCTCTGGCTGGCGTA
* * * * *
18158452 GTGCCCGCCTGCCTGCCCGCCCGCTCCTTTCATCGGTTGGCTTAGACATAC-GAAGTTCATTTCC
687 GTACCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCA-TTCC
* *
18158516 AGTCTAAGATTCAACTGGACCGAGGGTTATGATAGCAGGATCGACAGCACGTAGAGGGGGACCCG
750 AGTCTAAGA-TCGACTGGACCGAGGGTTACGATAGCAGGATCGACAGCACGTAGAGGGGGACCCG
* * *
18158581 ATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCC
814 ATCGATCCCCAACTTACGCATCCCGCCCCTCTAGCCC
18158618 CCTATCCCTC
Statistics
Matches: 3815, Mismatches: 437, Indels: 282
0.84 0.10 0.06
Matches are distributed among these distances:
869 139 0.04
870 40 0.01
871 20 0.01
872 225 0.06
873 6 0.00
874 19 0.00
875 607 0.16
876 34 0.01
877 64 0.02
878 10 0.00
879 399 0.10
880 816 0.21
881 17 0.00
882 1 0.00
884 4 0.00
885 4 0.00
886 7 0.00
887 1 0.00
888 3 0.00
889 1 0.00
890 2 0.00
891 9 0.00
892 11 0.00
893 11 0.00
894 17 0.00
895 9 0.00
896 212 0.06
897 218 0.06
898 2 0.00
899 2 0.00
900 3 0.00
901 1 0.00
902 506 0.13
903 61 0.02
904 2 0.00
905 85 0.02
906 245 0.06
907 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (877 bp):
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
CAGACCAGACCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTACTGGTGCCACATTTTTC
TTCGTCGGGGCACCATCCAGATCCAACGACGACATTGGGTTTCGACGATCGGGGGACCGGGGGGT
GTGTGCACAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAA
ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTAAAAAATCATAAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCAGCAAAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGA
TCCACGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTACCCGCCTGCCCGCCCGCCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATCGACTGGACCGAGGGTTACGA
TAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCAACTTACGCATCCCGCCCCTCT
AGCCCGCTGAGCGCCCGCACCTCATGTCGTGC
Found at i:18157785 original size:26 final size:26
Alignment explanation
Indices: 18157749--18157801 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18157739 GTTGACTTAG
*
18157749 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18157775 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18157801 G
1 G
18157802 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18160198 original size:26 final size:26
Alignment explanation
Indices: 18160161--18160213 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18160151 GTTGACTTAG
* **
18160161 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18160187 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18160213 G
1 G
18160214 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18160626 original size:902 final size:897
Alignment explanation
Indices: 18158612--18160959 Score: 3413
Period size: 902 Copynumber: 2.6 Consensus size: 897
18158602 CCCGCCCCTC
18158612 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
1 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
18158677 AGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
66 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
18158742 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATG
131 TCTTGTACACTTCGAGTTTTT-GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * * *
18158807 TCTACCAAGTTTTGGACCAAAACTCCTTCC-AAAAAAGTTTTAAAAAATTTCGAACCACAAAAAG
195 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA-TTTTAAAAAATCTCGAACCACAAAAAG
* *
18158871 TTTTAAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
259 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
**
18158936 GGACCATTGTATGAATTTACAAGCCATAAAAATCTCATTGGCATGCAGAAATATGAAGATGTGCC
324 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * *
18159001 TAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCATCTCTCTGGCCGATGTAGTG-
389 TAAACCCACCTACCACCCTATCGATCCA-CGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGC
* * *
18159065 C-CC-GC-CCGCCCGCTCGTTTCGTCGGTTGGCTGAGGCATACAGAGTTCATTCCCAGTCTAAGA
453 CGCCTGCGCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * ** *
18159127 TCAGACTGGACTGAGGGTTGCGGCAGCAAGATCAGCAGCACGTAGAGGGGGACTCGACCGATCCC
518 TCGGACCAGACTGAGGGTTGCGACAGCAAGATCAGCAGCACGCAGAGGAAGACCCGACCGATCCC
** * **
18159192 CAGCTCGCCCATCCCACCTTTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTA
583 CAGCTCGCCCATCCCACCCCTCTGGCCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTA
* * *
18159257 GGCATACAGAATTCATTCCCAGTCTCAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGA
648 GGCATACAGAATTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGA
** ** *
18159322 TTGAGGGTTACAGTAGCACATGCTGGGCTCGGGCATGTGCTGGGGCCGCATTTTTCTTCGTCGGG
713 CCGAGGGTTACAGTAGCACATGCTGGGCTCGGGCATGTGCTGGGGCCGCATTTTTCTTCACCGAG
*
18159387 GCACCATCGCCGGAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGG
778 GCACCATCGCCGGAGCATCCCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGG
*
18159452 GCCGGGGGGTGTGCACGTAACCATGTGCAATGGGTGCTGGTACTTGGCCCTTATAT
843 GCCGGGGGGTGTGCACATAA-CATGTGCAATGGGTGCTGGTACTTGGCCCTTATAT
*
18159508 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTAC
1 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
18159573 AGGTTTACT-ACAGTAGCCATTAAAGTGTTCGAAATAGGGACACTTTTTTCAAATGGTCACAAAA
66 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
18159637 TCTTGTAC-CTTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
131 TCTTGTACAC-TTCGAG-TTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * *
18159701 GTCAACCAAGTTTGGGGCCAAAAAGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAGG
194 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAG
18159766 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
259 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
18159831 GGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCC
324 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* *
18159896 TAAACCCACCTACCACCCTATCGATTCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGT
389 TAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCATCTCTCTGGCCGACGTAGTG-
*
18159961 CCGCCTGCCCGCTCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
452 CCGCCTG--CGC-CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * ** *
18160026 AAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATTGGCAGCATGCAGAGGAAGACCCGACCGA
514 AAGATCGGACCAGACTGAGGGTTGCGACAGCAAGATCAGCAGCACGCAGAGGAAGACCCGACCGA
* * ** * * **
18160091 TCCTCAGCTTGTGCATCCCGCCCCTCTGGTCGGTTGAGCACCCACACGCTCGTTTCGTGGGTTGA
579 TCCCCAGCTCGCCCATCCCACCCCTCTGGCCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGA
* * ** **
18160156 CTTAGGCATACGGAGTTCATTCCTGGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC
644 CTTAGGCATACAGAATTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAAC
* ** * *
18160221 TAGACCGAGGGTTTTAGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA-TTTTCTTCAC
709 CAGACCGAGGGTTACAGTAGCACATGCTGGGCTCGGGCATGTGCTGGGGCCGCATTTTTCTTCAC
* *
18160285 CGAGGCACCATCGTCGGAGCATCCCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
774 CGAGGCACCATCGCCGGAGCATCCCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGG
* *
18160350 GGGGGCCGGGGGGTGTGCGCACAT-A-ATGTGCGATGGGTGCTGGTGCTTGGCCCTTATAT
839 GGGGGCCGGGGGGTGT--GCACATAACATGTGCAATGGGTGCTGGTACTTGGCCCTTATAT
* *
18160409 TGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAATA-AGCATTTGAGATTTTA
1 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA-AGAGCATTTGAGATTTTA
* *
18160473 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGGAATGGGGACACTTTTTTCAAATGTTCACAAA
65 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* ** *
18160538 ATCTTGTACACTTCGAGTTTTTGCTGATTTTTTTTTGTGCATTTCAAAAAAAATATAAGGATCAC
130 ATCTTGTACACTTCGAGTTTTTGCTGA-ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * *
18160603 GTCTACCAAGTTTGGGGCCAAAAATCTTTTCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAG
194 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAG
* * *
18160668 TTTCAAAAATCATGAAAAAAAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
259 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
18160733 GGACAATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCC
324 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * *
18160798 TAAACCCACCTAGCACCCTATCGATCCACGACTTGTGCATCCCATCTCTCTGGCCGACTTAGTGC
389 TAAACCCACCTACCACCCTATCGATCCACG-CTTGCGCATCCCATCTCTCTGGCCGACGTAGTG-
* * *
18160863 CCGCCTGTTCGCCCGCCCGCTCGTTTCTTCGGTTGGGTTAGGCATACGAAGTTCATTCCCAGTCT
452 CCGCCTG--CG-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
18160928 AAGATCGAAGCAGACTGAGGGTTCCGATAGCA
514 AAGATCGGACCAGACTGAGGGTTGCGACAGCA
18160960 CATACTAGGC
Statistics
Matches: 1299, Mismatches: 133, Indels: 34
0.89 0.09 0.02
Matches are distributed among these distances:
894 1 0.00
895 336 0.26
896 81 0.06
897 1 0.00
898 2 0.00
899 1 0.00
901 111 0.09
902 503 0.39
903 258 0.20
904 5 0.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (897 bp):
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTT
TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCGC
CTGCGCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCAGACTGAGGGTTGCGACAGCAAGATCAGCAGCACGCAGAGGAAGACCCGACCGATCCCCAG
CTCGCCCATCCCACCCCTCTGGCCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGC
ATACAGAATTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCG
AGGGTTACAGTAGCACATGCTGGGCTCGGGCATGTGCTGGGGCCGCATTTTTCTTCACCGAGGCA
CCATCGCCGGAGCATCCCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
GGGGGGTGTGCACATAACATGTGCAATGGGTGCTGGTACTTGGCCCTTATAT
Found at i:18166309 original size:719 final size:720
Alignment explanation
Indices: 18163379--18167681 Score: 6153
Period size: 721 Copynumber: 6.0 Consensus size: 720
18163369 GCACGCACGC
** * * * * * *
18163379 TCGTTTCAAGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
1 TCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
* * ** * * *
18163444 GTTGCAGTAGCACATGCTGGGCTC-AGGCATGTGCCGGTGTCACATTTTTCTTCGTCGGGGCACC
66 GTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGTTGGTGCCAAATTTTTCTTCGCCGGGGCACC
* * * * * * * *
18163508 ATCGTCGGAGCATCATCGGAGAACTGGACCGACAGCATTGAGGTTCCAGCGATCGGGGGGGCC-G
130 ATCGTCGGAGCATCGTTGGAGAACTTGACCGACGGCATTGGGGTTCCAACGATCAGGGGGACCGG
** ** * * * * *
18163572 GGG-GGTGCCCGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCC
195 GGGTGGTGTGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCACTTACATTTGCCCCCTATCC
* * * * *
18163636 CTCATCAAACCTCGAGAACTCACACCTCCTTAAAGATCATTTGATATTTTACAGGTTTGCTGCCA
260 CTCATCAAACCTTGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
18163701 GTAGCCATTAAAGTGTCTGAAAT--GG--------------T-G--ATAAAATCATGTACACTTC
325 GTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* ** * * * *
18163747 GATTTTTTATCT-AATTTTTTT-TGCATGCCAAAAAAAATACAAGGATCACGTCTGCCAAGTTT-
390 AAGCTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTC
* * * * * * *
18163809 GGGGCCAAAACACCTACCGAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATAAT
455 GGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCAT
* * *
18163874 GAAAAATCGAAAACGAGTCATCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATG
520 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
18163939 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCGAC
585 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAAC-CCCCTAC
* *
18164004 CACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCCGCCCATC
649 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCCGCCCGTC
18164069 TGCCCGT
714 TGCCCGT
* *
18164076 TTGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAATATCAGATCGGACCGAGG
1 TCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
*
18164141 GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGTCAAATTTTTCTTCGCCGGGGCACCA
66 GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCAAATTTTTCTTCGCCGGGGCACCA
*
18164206 TCGTCGGAGCATCGTTGGAGAACTTGACCGGCGGCATTGGGGTTCCAACGATCAGGGGGACCGGG
131 TCGTCGGAGCATCGTTGGAGAACTTGACCGACGGCATTGGGGTTCCAACGATCAGGGGGACCGGG
18164271 GGTGGTGTGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCACTTACATTTGCCCCCTATCCC
196 GGTGGTGTGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCACTTACATTTGCCCCCTATCCC
18164336 TCATCAAACCTTGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
261 TCATCAAACCTTGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
18164401 TAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCA
326 TAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* *
18164466 AGCTTTTAGCTGAATTTTTTTGAGCATGCCACAAAAAATACGAGGATCATGTCTACCAAGTTTCG
391 AGCTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTCG
*
18164531 GGG-AAAAACTCTTTCTGAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCAT
456 GGGCAAAAACTCCTTCTGAAAAAATTTT-AAAAAATCTCGAACCATAAAAAGTTTCAAAAATCAT
*
18164595 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATG
520 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
18164660 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACTCACCGAC
585 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAAC-CCCCTAC
18164725 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCCGCCCGTC
649 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCCGCCCGTC
*
18164790 TGCTCGT
714 TGCCCGT
*
18164797 TCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAATATCAGATCGGACCGAGG
1 TCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
* *
18164862 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAAAATTTTCTTCGCCGGGGCACCA
66 GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCAAATTTTTCTTCGCCGGGGCACCA
* *
18164927 TCGCCGGAGCATCGTTGGAGAACTTGACCGGCGGCATTGGGGTTCCAACGATCAGGGGGACCGGG
131 TCGTCGGAGCATCGTTGGAGAACTTGACCGACGGCATTGGGGTTCCAACGATCAGGGGGACCGGG
18164992 GGTGGTGTGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCACTTACATTTGCCCCCTATCCC
196 GGTGGTGTGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCACTTACATTTGCCCCCTATCCC
18165057 TCATCAAACCTTGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
261 TCATCAAACCTTGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
18165122 TAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCA
326 TAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* *
18165187 AGCTTTTAGCTGAATTTTTTTGAGCATGCCACAAAAAATACGAGGATCATGTCTACCAAGTTTCG
391 AGCTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTCG
*
18165252 GGG-AAAAACTCTTTCTGAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCAT
456 GGGCAAAAACTCCTTCTGAAAAAATTTT-AAAAAATCTCGAACCATAAAAAGTTTCAAAAATCAT
*
18165316 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATG
520 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
18165381 AATTTA-AATGCCATAAAAATGGCATTGGAACATAGAAATATGAAGATGTGCCTAAACCCCCTAC
585 AATTTACAA-GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCCCTAC
* * * *
18165445 CACCCTATCGATCCATGGTTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGACCGCCCACCCGTC
649 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCCGCCCGTC
*
18165510 TGCCCAT
714 TGCCCGT
18165517 TCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
1 TCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
18165582 GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCAAATTTTTCTTCGCCGGGGCACCA
66 GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCAAATTTTTCTTCGCCGGGGCACCA
*
18165647 TCGTCGGAGCATCGTTGGAGAACTTGACCGGCGGCATTGGGGTTCCAACGATCAGGGGGACCGGG
131 TCGTCGGAGCATCGTTGGAGAACTTGACCGACGGCATTGGGGTTCCAACGATCAGGGGGACCGGG
18165712 GGTGGTGTGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCACTTACATTTGCCCCCTATCCC
196 GGTGGTGTGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCACTTACATTTGCCCCCTATCCC
18165777 TCATCAAACCTTGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
261 TCATCAAACCTTGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
18165842 TAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCA
326 TAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* *
18165907 AGCTTTTAGCTGAATTTTTTTGAGCATGCCACAAAAAATACGAGGATCATGTCTACCAAGTTTCG
391 AGCTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTCG
*
18165972 GGG-AAAAACTCTTTCTGAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCAT
456 GGGCAAAAACTCCTTCTGAAAAAATTTT-AAAAAATCTCGAACCATAAAAAGTTTCAAAAATCAT
*
18166036 GAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATG
520 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
18166100 AAATTA-AATGCCATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCCCTAC
585 AATTTACAA-GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCCCTAC
* * * *
18166164 CACCCTATCGATCCATGGTTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGACCGCCCACCCGTC
649 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCCGCCCGTC
18166229 TGCCCGT
714 TGCCCGT
18166236 TCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
1 TCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
* *
18166301 GCTGCGGCAGCTCATGCTGGGCTCGAGCATGTGTTGGTGCCAAATTTTTCTTCGCCGGGGCACCA
66 GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCAAATTTTTCTTCGCCGGGGCACCA
18166366 TCGTCGGAGCATCGTTGGAGAACTTGACCGACGGCATTGGGGTTCCAACGATCAGGGGGACCGGG
131 TCGTCGGAGCATCGTTGGAGAACTTGACCGACGGCATTGGGGTTCCAACGATCAGGGGGACCGGG
* *
18166431 GGTGGTGTGCGCACATGATGTGTGATTGGTACTGGTACTTGGCACTTACATTTGCCCCCTGTCCC
196 GGTGGTGTGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCACTTACATTTGCCCCCTATCCC
*
18166496 TCATCAAACCTTGAGAACTCACGCCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAG
261 TCATCAAACCTTGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * * *
18166561 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCATAAAATCTTGTATACTTCG
326 TAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* * * * * *
18166626 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCCAGGAACACGTCTACCAGGTTT-G
391 AGCTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTCG
* * * * *
18166690 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCATG
456 GGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATG
* *
18166755 AAAAATAGAAAACGACTCGTCTTGCCATGAAAACTTCACGTAAAGGCTTAAGGGACCATTGTATG
521 AAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * ** *
18166820 AATTTTCAAGCCATAGAAATGGCATTCGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAG
585 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC-CCTAC
* * *
18166885 CACCCTATCGATCCACGGCTAGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCTGCCCGCCCGT
649 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGACC-GCCCGCCCGT
* *
18166949 CCGCCCGCCCGC
713 ----CTGCCCGT
* * * * *
18166961 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
1 TCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCTAG--T---C-TA---AG--------
* * **
18167026 CAGTCTAAGATCAGACCATACTGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCAGGTG
49 -A-TC--AGATCGGA-C---C-GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTG
** * * * * **
18167091 CCGCATTTTTCTTCGTCGGGGCACCATCTTCGTAGCATTGCCGGAGAACTTGACCGACGGCATTG
105 CCAAATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTTGGAGAACTTGACCGACGGCATTG
* * * *
18167156 GGGTTCCGACGAT-ACGGGG-CCGAGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
170 GGGTTCCAACGATCAGGGGGACCG-GGGGTGGTGTGCGCACATGATGTGTGATTGGTGCTGGTAC
* * * * *
18167218 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
234 TTGGCACTTACATTTGCCCCCTATCCCTCATCAAACCTTGAGAACTCACGCCCCCTTAAAGAGCA
* * * *
18167283 TTTGAGGTTTTACAAGTTTGGTGCCAGTGGCCATTAAAGTGGCCATTAAAGTGTCTGAAATGGGG
299 TTTGAGATTTTAC-AGGTT--TG-C--T-GCC-----AGTAGCCATTAAAGTGTCTGAAATGAGG
* * *
18167348 ACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
352 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGCTTTTAGCTGAATTTTTTTGAGCA
* * * * *
18167412 AGCCAAAAAAAATACAAGGATCACATCTACCAA-TTTTGGGGCCAAAACTCCTTCTGAAAAAATT
417 TGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTCGGGGCAAAAACTCCTTCTGAAAAAATT
* ** * *
18167476 TTAAAAAATCTCGGACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTCGCC
482 TTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
18167541 ATTAAACTTCACGTGAAGGCTTAAGGGACGATTGTATAAATTTACAAGCCATAAAAATGGCATTG
547 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
18167606 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACTCTATCGATCCACAGCTTGCGCAT
612 GCACATAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACGGCTTGTGCAT
*
18167671 CCCATCTCTCT
676 CCCGTCTCTCT
18167682 ATCCGATGCA
Statistics
Matches: 3331, Mismatches: 198, Indels: 92
0.92 0.05 0.03
Matches are distributed among these distances:
697 165 0.05
698 5 0.00
699 135 0.04
701 2 0.00
715 1 0.00
716 1 0.00
718 70 0.02
719 670 0.20
720 737 0.22
721 923 0.28
725 43 0.01
727 1 0.00
730 1 0.00
731 2 0.00
734 2 0.00
743 1 0.00
744 2 0.00
746 7 0.00
747 1 0.00
749 105 0.03
750 14 0.00
751 107 0.03
752 2 0.00
753 1 0.00
755 1 0.00
756 3 0.00
759 128 0.04
760 170 0.05
761 31 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (720 bp):
TCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCAAATTTTTCTTCGCCGGGGCACCA
TCGTCGGAGCATCGTTGGAGAACTTGACCGACGGCATTGGGGTTCCAACGATCAGGGGGACCGGG
GGTGGTGTGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCACTTACATTTGCCCCCTATCCC
TCATCAAACCTTGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
AGCTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTCG
GGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCCCTACCA
CCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCCGCCCGTCTG
CCCGT
Found at i:18167012 original size:26 final size:26
Alignment explanation
Indices: 18166982--18167034 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18166972 GTTGACTTAG
18166982 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18167008 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18167034 G
1 G
18167035 ATCAGACCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18167325 original size:12 final size:12
Alignment explanation
Indices: 18167308--18167335 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
18167298 GTTTGGTGCC
18167308 AGTGGCCATTAA
1 AGTGGCCATTAA
18167320 AGTGGCCATTAA
1 AGTGGCCATTAA
18167332 AGTG
1 AGTG
18167336 TCTGAAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (12 bp):
AGTGGCCATTAA
Found at i:18168342 original size:608 final size:610
Alignment explanation
Indices: 18167132--18168350 Score: 1867
Period size: 608 Copynumber: 2.0 Consensus size: 610
18167122 GTAGCATTGC
* *
18167132 CGGAGAACTTGACCGACGGCATTGGGGTTCCGACGATACGGGGCCGAGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGACGACATTGGGGTTCCGACGATACGGGGCCGAGGGGGGTGTGCGCACATG
* * **
18167197 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGCGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATCGAGAA
* * *
18167262 CTCACACCCCCTTAAAGAGCATTTGAGGTTTTACAAGTTTGGTGCCAGTGGCCATTAAAGTGGCC
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAA--GG-C
18167327 ATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
193 -TT--A-TGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
18167392 TAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACATCTACCAATTTTGGGGCCAA
254 TAGCTGAATTTTTTTGTCCAAGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
* * *
18167457 AACTCCTTCTGAAAAAATTTTAAAAAATCTCGGACCGCAAAAAGTTTCAAAAATCATGAAAAATA
319 AACTACTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * * *
18167522 GAAAACGAGTTGTCTCGCCATTAAACTTCACGTGAAGGCTTAAGGGACGATTGTATAAATTTACA
384 GAAAACGAGTCGTCTCGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACA
* * *
18167587 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACTCTAT
449 AGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
18167652 CGATCCACAGCTTGCGCATCCCATCTCTCTATCCGATGCAGTGCCCAATCACCCGCCCGCTCGTT
514 CGATCCACAGCTTGCGCATCCCATCTCTCTAGCCGACGCAGTGCCCAATCACCCGCCCGCTCGTT
18167717 TCGTCGGTTGGCTTAGGCACACGGAGCATCGT
579 TCGTCGGTTGGCTTAGGCACACGGAGCATCGT
* * * *
18167749 CGGAGATCCTGACCGGCGACATTGGGGTTCCGGCGAT-CGGGGGGACTGAGGGGGGTGTGCGCAC
1 CGGAGAACCTGACCGACGACATTGGGGTTCCGACGATAC--GGGG-CCGAGGGGGGTGTGCGCAC
* *
18167813 ATGATGTGTGATGGGTACTGGTACTTGGCCATTATATTGGTCCCCTATCCCTCATCAAAAATCGA
63 ATGATGTGCGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATCGA
* *
18167878 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAA-G-
128 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGGC
*
18167941 TT-T-T-TGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTA
193 TTATGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTA
* *
18168002 GCTGAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
256 GCTGAATTTTTTTGTCCAAGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA
*
18168067 CTACTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
321 CTACTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
* *
18168132 AAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
386 AAACGAGTCGTCTCGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAG
* * *
18168197 GCATGAAAATGGCATTGGCACTTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
451 CCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
18168262 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGTGCCCAATCGCCCGTCCGCTCGTTTC
516 ATCCACAGCTTGCGCATCCCATCTCTCTAGCCGACGCAGTGCCCAATCACCCGCCCGCTCGTTTC
*
18168327 GTCGGTTGGCTTAGGCATACGGAG
581 GTCGGTTGGCTTAGGCACACGGAG
18168351 TTCATTCCTA
Statistics
Matches: 551, Mismatches: 46, Indels: 19
0.89 0.07 0.03
Matches are distributed among these distances:
607 15 0.03
608 361 0.66
609 1 0.00
613 2 0.00
616 2 0.00
617 32 0.06
618 4 0.01
619 134 0.24
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (610 bp):
CGGAGAACCTGACCGACGACATTGGGGTTCCGACGATACGGGGCCGAGGGGGGTGTGCGCACATG
ATGTGCGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGGCTTA
TGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTCCAAGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACT
TCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCGTCTCGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATA
AAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CAGCTTGCGCATCCCATCTCTCTAGCCGACGCAGTGCCCAATCACCCGCCCGCTCGTTTCGTCGG
TTGGCTTAGGCACACGGAGCATCGT
Found at i:18169890 original size:891 final size:882
Alignment explanation
Indices: 18167798--18171193 Score: 4275
Period size: 891 Copynumber: 3.8 Consensus size: 882
18167788 GGGGGACTGA
* * *
18167798 GGGGGGTGTGCGCACATGATGTGTGATGGGTACTGGTACTTGGCCATTATATTGGTCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
** *
18167863 CTCATCAAAAATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCA
66 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCA
* *
18167928 GTAGCCATTAAAGTTTTTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TC
131 GTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
18167992 TGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
196 -GAGTTTTTAGCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
*
18168057 GGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCAT
260 GGGGCCAAAACTACTT-CAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCAT
18168122 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATG
324 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATG
* * * *
18168187 AATTTACAAGGCATGAAAATGGCATTGGCACTTAAAAATATGAAGATGTGCCTAAACCCACCTAC
389 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
* ***
18168252 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGTGCCCAATCGCCCGTC
454 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTC
*
18168317 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACTG
519 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-GACCGGACTG
* ** *
18168382 AGAGTTG-CGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
583 AGGGTTGTC-GTAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCAT
* * * * * ** * *
18168446 CCCTCCCATATGGCCGACTGAGCGCCCGTACGCTTGTTTCGTTTGTTGACATAGGCATACAGAGT
647 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
18168511 TCATTCCCAGTCTAAGCACATGGAGTTCATTCCCAGTATAAGATCGGACCGGA-TCGAGGGTTAC
712 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GACT-GAGGGTTGC
* * * *
18168575 GACAGCACATACTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCACCGCC
775 GGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCACCGTC
* * * * * * **
18168640 GGAGAACCTGACTGGTGGCATTGGCGTTCCGGTGATC----G--
840 AGAGAACCTGAC-CGCGGCAATAGAGTTCCAATGATCGGGGGCC
* * *
18168678 GGGGGGTGTGCGCACATGATGTGTGCTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
18168743 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
66 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCA
*
18168808 GTAGCCATTAAAGTGTT-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTT
131 GTAGCCATTAAAGT-TTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * *
18168872 TGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCCCATCTACCAGGTTT
195 CGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * * * *
18168937 GGGACCGAAACTCCTTTCAAAAAATTTTTATAAAATCTTGAACCACAAAAGGTTTTAAAAATCAT
260 GGGGCCAAAACTAC-TTCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCAT
* *
18169002 GAAAAATAGAAAACGAGTCGTCTTACCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTTTG
324 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATG
* ***
18169067 AATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
389 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
18169132 CACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCC-AGCGTAGTG-CCGCCCGTTTAC
454 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCG----C
18169195 CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGCACCG
514 CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCG-ACCG
** * * ** *
18169260 GACCAAGGGTTGTCATAGCAAGATCGACAGCACACAGAGGGGGACCCGATTGATCCCCAGCTTAC
578 GACTGAGGGTTGTCGTAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGC
* * * * *
18169325 GCATCCCGCTCCTCTGGCCGGCTGAGCGCCTGCACGCTCATTTTGTGGGTTGACTTAGGCATACG
643 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
18169390 GAGTTCATTCCTAGTGTAAGTATATGGAGTTCATTCCCAGTCTAGGATCGGACCAGACTGAGGGT
708 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTGAGGGT
* * *
18169455 TGCGGCAGCACATGCTGGGCTCAGGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATC
772 TGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCACC
* *
18169520 GTCAGAGAACCTGACCAGCGGCACTCGAGTTCCAATGATCGGGGGTGCC
837 GTCAGAGAACCTGACC-GCGGCAATAGAGTTCCAATGATC-GGGG-GCC
18169569 GGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
18169634 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACATGTTTGCTGCCA
66 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCA
* *
18169699 GTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGC
131 GTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
18169764 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT-TAACCAAGTTT
196 GAGTTTTTAGCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTT
* * * **
18169828 GGGGCCAAAAATCCTTCAAAAAAAATTTTAAAAAATCTCGAATTGCAAAAAGTTTCAAAAATCAT
260 GGGGCCAAAACTACTTC-AAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCAT
* *
18169893 GGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
324 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
18169958 AATTTAGAAGCCATAAAAATGGCATTGGCACATAGAAATATGATGATGTGCTTAAACCCACCTAC
389 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
18170023 CACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGAAGTGCCCGCCCGCCCGTC
454 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTC
* *
18170088 CGCCCCTTCGTTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCC-ATGTCTAAGATCAGACCA
519 CG---C-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA-GTCTAAGATC-GACCG
* * * * * * * *
18170152 AATTGAGGGTTGTGGCAGCAGGATTGACAGCACACAGAGGGGAACCC-AGCTGATCCCCGGCTTG
578 GACTGAGGGTTGTCGTAGCAGGATCGACAGCACACAGAGGGGGACCCGA-CCGATCCCCAGCTTG
* * ** * * *
18170216 CGCATCCTGCCCCTGGTTGGCCGGTTTG-GCGCCCACCACGCTCCGTTTTGTGTGTTGACTTAGG
642 CGCATCCCGCCCCT--CTGGCC-GACTGAGCGCCC-GCACGCT-CGTTTCGTGGGTTGACTTAGG
* ** **
18170280 -ATACGG-G-TC-TTCCCAGTCTAAGCATACGGCAAGTTCATTGTCAGTCTAAG-TCAAAACTGC
702 CATACGGAGTTCATTCCCAGTCTAAGCATATGG--AGTTCATTCCCAGTCTAAGATC-GGAC--C
* * *
18170340 GAC-GAGGGGTGCGGTTAGCACATGCT-GGC-C-GGCATGTGCTGGGTGACGCATTTCTCTT-GT
762 GACTGAGGGTTGCGG-CAGCACATGCTGGGCTCAGGCATGTGCT-GGTGACGCATTTTTCTTCGT
* * * * * * *
18170400 CGGGACCATCGCCGGGAGCATCACGCGGAGAACCTGACCGACGGCAATAGGGGTCCGAACGATTG
825 CGGG-GCA---CC---ACCGTCA----GAGAACCTGACCG-CGGCAATAGAGTTCC-AATGATCG
18170465 GGGGCC
877 GGGGCC
* * * *
18170471 --GGGGTGTACGCCACAATGGAT-TGTCTAT-GGTGCTAGTAC-TGGCCCTTATATTGGCCCCCT
1 GGGGGGTGTGCG-CAC-AT-GATGTG-CGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCT
*
18170531 ATCCCTCATCCAAACCTTGAGAACT--CACCCCCTTAAAGAGCATTTGAGATTTTATA-GTTTGC
62 ATCCCTCAT-CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
18170593 TTCCAAGTA-CCATTAAAGTTTCTGAAAT-GGGACCAC-TTTTTCAAGTGGCCACAAAATC-TGT
126 TTCC-AGTAGCCATTAAAGTTTCTGAAATGGGGA-CACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
18170654 ACACTTTCGAGTTTTTTGCGGAATTTTTTTGTCCATGCC-A-AAAAATACAAGGATCATGTCTAC
189 ACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTAC
* *
18170717 C-AGTTCCTGGGGCCAAAACTACTTCTAATAAAGTTTTAAAAAATCTTGAACCGCAAAAAGTTTC
253 CAAGTT--TGGGGCCAAAACTACTTC-AAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTC
* *
18170781 AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGAC
315 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGAC
* *
18170846 AATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
380 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
* *
18170911 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGT
445 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * * * *
18170976 CCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTTAGATCAA
510 CCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-G
* * * * * *
18171041 ACTGGACTGAGGGTTGT-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCAGC
574 ACCGGACTGAGGGTTGTCGTAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCAGC
* * * * *
18171105 TTGCGCATCCTGCCCCTCTGGCCGACTGCGCACCCGCACGCTTGTTTCGTGGCTTGACTTAGGCA
639 TTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
18171170 TATGGAGTTCATTCCCAGTATAAG
704 TACGGAGTTCATTCCCAGTCTAAG
18171194 ATCAGACCAG
Statistics
Matches: 2201, Mismatches: 240, Indels: 138
0.85 0.09 0.05
Matches are distributed among these distances:
879 5 0.00
880 458 0.21
881 5 0.00
882 1 0.00
883 311 0.14
884 2 0.00
888 25 0.01
889 15 0.01
890 16 0.01
891 461 0.21
892 217 0.10
893 83 0.04
894 44 0.02
895 32 0.01
896 43 0.02
897 249 0.11
898 54 0.02
899 35 0.02
900 42 0.02
901 33 0.01
902 32 0.01
903 33 0.01
904 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (882 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCA
GTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTACTTCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGACCGGACTGAGG
GTTGTCGTAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCG
CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGACTGAGGGTTGCGGCAGC
ACATGCTGGGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCACCGTCAGAGAA
CCTGACCGCGGCAATAGAGTTCCAATGATCGGGGGCC
Found at i:18175073 original size:20 final size:20
Alignment explanation
Indices: 18175050--18175089 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
18175040 GCCATCAAGG
*
18175050 TTTGTGACTAGCCAACTATT
1 TTTGGGACTAGCCAACTATT
18175070 TTTGGGACTAGCCAACTATT
1 TTTGGGACTAGCCAACTATT
18175090 ATAGAAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (20 bp):
TTTGGGACTAGCCAACTATT
Found at i:18177643 original size:26 final size:26
Alignment explanation
Indices: 18177613--18177668 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18177603 TGGGTTGACT
*
18177613 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
18177639 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
18177665 TAAG
1 TAAG
18177669 ATCAGACTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:18178555 original size:26 final size:26
Alignment explanation
Indices: 18178516--18178571 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18178506 TGGGTTGACT
*
18178516 TAAGCATGCAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
18178542 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
18178568 TAAG
1 TAAG
18178572 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:18179448 original size:26 final size:26
Alignment explanation
Indices: 18179405--18179460 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18179395 TGGGTCGACT
* * *
18179405 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGATCATTCCAAGTC
18179431 TAAGCATACAGAGATCATTCCAAGTC
1 TAAGCATACAGAGATCATTCCAAGTC
18179457 TAAG
1 TAAG
18179461 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGATCATTCCAAGTC
Found at i:18180318 original size:26 final size:26
Alignment explanation
Indices: 18180281--18180336 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18180271 CGGGTTAACT
* *
18180281 TAAGCATGCGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
18180307 TAAGCATACGGAGTTCATTCCAAGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
18180333 TAAG
1 TAAG
18180337 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCAAGTC
Found at i:18181203 original size:26 final size:26
Alignment explanation
Indices: 18181167--18181243 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
18181157 TGACTTAGGT
* *
18181167 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTTCCAGTCTAAGC
*
18181193 ATACAGAGTTCATTTCCAGTCTAACC
1 ATACAGAGTTCATTTCCAGTCTAAGC
**
18181219 ATGGAGAGTTCATTTCCAGTCTAAG
1 ATACAGAGTTCATTTCCAGTCTAAG
18181244 ATCAGATAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
ATACAGAGTTCATTTCCAGTCTAAGC
Found at i:18181565 original size:893 final size:903
Alignment explanation
Indices: 18180422--18191301 Score: 5764
Period size: 894 Copynumber: 11.9 Consensus size: 903
18180412 GGCACCATTT
* ** * *
18180422 TCGGAGCATCGCAGGAGAACCTGACCGACGGTATTGGGGTTTCGATGATCGGGGGGGCCGGGGGG
1 TCGGAGCATCGCAGGAGAACCTGACCGACGGCATTGGGGTACCGATGATCAGGGGGGCCAGGGGG
*
18180487 TGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
66 TGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
18180552 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
131 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
* *
18180617 ATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTT
196 ATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
18180682 TTAGCTG-A-A-GCTAACAAAAATACAAGGATCACATCTACTAAGTTTGGGGCCAAAACTCCTTC
261 TTAGCTGAATACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
* * **
18180744 CGAAAAAGTT-TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACCA
326 CGAAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACCA
* * *
18180808 GTCGTCTTACCGTGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
391 GTCATCTTACCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATCAATTTACAAGCCATAA
** *
18180873 AAATGGCATTGGCATGCAGAAATATGAAGATTTACCTAAACCCACCTATCACCCTATCGATCCAC
456 AAATGGCATTGGCATGCAGAAATATGAAGACATACCTAAACCCACCTACCACCCTATCGATCCAC
* *
18180938 GGCTTGCACATCCCGTCTCTCTCGCCGACGTA-AT-GCCCGTCCGTCCG-CT-CA-TTTCGTCAG
521 GGCTTGCACATCCCGTCTCTCTCGCCGACGTAGATCGCCCGCCCGCCCGCCTCCACTTTCGTCAG
* *
18180998 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAA-GGTTGTGGCAGC
586 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCAAGGGTTGTAGCAGC
* * * * * *
18181062 AGGATTGGCAGCACGTAAAGGGGGACCC-GACCATCCTCGGCTTGTGCATCCCGCCCCTCTGGCC
650 AGGATCGACAGCACGTAAAGGGGGACCCGGACCATCCCCAGCTTGCGCATCCCGCCCCTCTAGCC
* * * *
18181126 GGTTGAGCGCCC-ACACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTA
715 GGCTGAGCACCCGA-ACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTA
18181190 AGCATACAGAGTTCATTTCCAGTCTAACCATGGAGAGTTCATTTCCAGTCTAAGATCAGATAGGA
779 AGCATACAGAGTTCATTTCCAGTCTAACCATGGAGAGTTCATTTCCAGTCTAAGATCAGATAGGA
18181255 ACGAGGGTTACGGCACCACATGCTAGGTTCGAGCTTGTGCTGGTGCCACATTTTTCTTCG
844 ACGAGGGTTACGGCACCACATGCTAGGTTCGAGCTTGTGCTGGTGCCACATTTTTCTTCG
* * *
18181315 TCGGAGCATCATC-GGAGAACCTGACCGATGGCATTGGGGTACCGGTGATCAGGGGGGCCAGGGG
1 TCGGAGCATC-GCAGGAGAACCTGACCGACGGCATTGGGGTACCGATGATCAGGGGGGCCAGGGG
* * *
18181379 GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCGCCCTATCTCTCAT
65 GTGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
18181444 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
130 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGC
* *
18181509 CATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTT
195 CATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
18181574 TTTAGCTGAATGTTTTTGTGCACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC
260 TTTAGCTGAA--------T--ACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC
*
18181639 AAAACTCCTTTCGAAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
315 AAAACTCCTTCCGAAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * * *
18181704 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTT
380 ATAAAAAACCAGTCATCTTACCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATCAATTT
*
18181769 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACATGCCTAAACCCACCTACCACCC
445 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACATACCTAAACCCACCTACCACCC
** * * *
18181834 TATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCC
510 TATCGATCCACGGCTTGCACATCCCGTCTCTCTCGCCGACGTA--GAT----CGCCCGCCCGCCC
* *
18181899 GCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
569 GCCT--CCA--C-TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
18181964 CAGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTT
629 CAGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGTAAAGGGGGACCCGGACCATCCCCAGCTT
*
18182029 GCGCATCCCGCCCCTCTAGTCGGCTGAGCACCCGAACGCTCGTTTCGTGGGTTGACTTACGCATA
694 GCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGAACGCTCGTTTCGTGGGTTGACTTACGCATA
* ** * * * **
18182094 TGGAGTTCATTCCCAGTCTAAGCATATGGAGTCCA-TTCCTAGTCTAA-GATTGA-ACCCGACCA
759 CGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCC-AGTCTAACCATGGAGA---GTTCA
* * * * * ** *
18182156 GGGTTGTGGCAG--TAGGATC-GACAGCACGCAGAGGGGGACCCGGC-CAATC-TGC-AGGTTGC
820 ---TT-T-CCAGTCTAAGATCAGATAGGA-AC-GAGGGTTA--CGGCACCA-CATGCTAGG-T--
* * * * *
18182215 ACATCCCACCCCTCTAGCGTGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCA
872 ---T-CGA--GCT-T---GTGCTG-GTG--C-CA----C-ATT--T---TT--CTT---CG
* * * * * *** * * *
18182276 TACGGAGTGCATTCCCAGTCTA-AACAT-ACGGA-GTTCATTCCCAGT--CTAAGATC-GGACCG
1 T-CGGA--GCA-TCGCAG--GAGAACCTGACCGACG-GCATT-GGGGTACCGATGATCAGG--GG
* * * * * * * * ** * *
18182335 GACC-GAGGGTTGTGACAGTACATGCTGGGCTCGA-GCATGTGCTGGTGC--CGCATTTTTCTTC
56 GGCCAG-GGGGTGT-ACA-CACATGATGTG--CGATG--GGTGCTGGTACTTGGCCCTTAT-AT-
* * * * * * * ** * *** *
18182396 GTCGGGGCACC-AT-CGTCGGAGC-ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCA
112 -T--GGCCCCCTATCCCTC--ATCAAACCTC-GAGAA-CTCA-C-ACCCCCTTAAAG----AGC-
* * * ** * * * * * * * *
18182458 ATCGGGGGGGCTGCTCGCACATGATGTACGATGGGTGCTAG-GACTTGGCCCTTATATTGGCCCC
163 AT---------T--T-G-AGAT--TTTAC-AAGTTTGCT-GCCA-GTAGCCATTAAAAT-GTCTC
** **** ***** ** * * * * *
18182522 CTAT-CCCTCACAAACCTCGAGAACTCTCGCCCCCTTAAAGAGCATT-TGAGATTTTAC-AG-GT
209 AAATGGGGACACTTTTTTC-A-AA---T-GGTCAC--AAA-ATC-TTGT-ACA-CTT-CGAGTTT
* *** ** * * * ** * *
18182583 TT-GCTGCCAGTA-GCCGTTAAAGTGTCTAAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAA
261 TTAGCTG--AATACGCCAACAAA---AATACAA---GGATCACATCTACCAAGTTTGGGGC-CAA
* *
18182642 AATCTTGTACACTT-CGATTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATA-CAAGGAT
317 AA-C---T-C-CTTCCGA------A----AA-A---AT-T--AT---AA-AAAAATAGC---GAA
* ** * *
18182705 CATGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAA
352 C-CG--TAAAAAGTTT-----CAAAAAT-C--GTG-AAAAA---T--AAAA-----AACC-----
* ** * * * * * *
18182770 AAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAA-ACTTCACATGAAGGC-
390 -AG--TC----ATC-T-TACCAT-G-AAAC---T--TC---ACGTGAAGCCTT-A-AGGGA-CCA
* * * *
18182833 TTGGGGGACCACAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGAT
433 TT---GTA--TCA--AT----TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAC
* * * *
18182898 GTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GACCGACG
487 ATACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTCG-CCGACG
* * * *
18182962 TAG-TGCCCGGCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTC
551 TAGAT---CGCCCGCCCGCCCG--C-CTC-CAC-TTTCGTCAGTTGGCTTAGGCATACGGAGTTC
* * * * * ** ** *
18183026 ATTCCCAGTCTAAGATCGGACAAGACCGAGGGTTGCAGCAGCAAGATCGGTAGCACACAGAGGGG
608 ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGTAAAGGGG
** * ** * *
18183091 GACCC-GACCGATCCCTGGCTTGTGCATCCCGCCGTTCTGGCCGGCTGAGCACCCGCACGCTCGT
673 GACCCGGACC-ATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGAACGCTCGT
* * ** *
18183155 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAG-
737 TTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGT
* *
18183219 -T---C-T--A-AG---A--T-C-G-----GA-C---T-GG-ACGGAGGGTTGCGGCATCACATG
802 CTAACCATGGAGAGTTCATTTCCAGTCTAAGATCAGATAGGAAC-GAGGGTTACGGCACCACATG
* * * * * *
18183258 CTGGGCTAGGGCATGTTCTGGTGCCACATTTTTCTTCGCCGAGG
866 CTAGGTTCGAGCTTGTGCTGGTGCCACATTTTTCTT---C---G
* * * * * ** *
18183302 CACCATCGCCAAAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGG
1 -----TCG---GAGCATCGCAGGAGAACCTGACCGACGGCATTGGGGTACCGATGATCAGGGGGG
* * * * * *
18183367 CCGGGGGGTGTCCACACATGATGTGCAATGGGTGCTGGTACTTGGCTCTTACATTGGCCCGCTAT
58 CCAGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
18183432 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
123 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
* *
18183497 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
188 CAGTAGCCATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
18183562 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCAACCAAGTT
253 TCGAGTTTTTAGCTGAA------TA--C--GCCAACAAAAATACAAGGATCACATCTACCAAGTT
* ** * * *
18183627 TGGGGCCAAAACTCCTTCCGAAAAAATT-TAAAAAATTCTCAAACCGCAAAAAGTTTAAAAAATC
308 TGGGGCCAAAACTCCTTCCGAAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTCAAAAATC
* * * * * *
18183691 CTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTA
373 GTGAAAAATAAAAAACCAGTCATCTTACCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTA
* * * ** * *
18183756 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTCAACCCACCT
438 TCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACATACCTAAACCCACCT
* * * * *
18183821 ACCACACTATCGATGCACGGCTTGCGCATCCCGTCTCTC-CGGTCGGCGTAG-T-GCCCGCTCGC
503 ACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTC-GCCGACGTAGATCGCCCGC-C-C
* * * * * * *
18183883 CCATCCGCC-CGCTCGTTTCGTCGGTTGGCTTAGGCAAATGGAGTTCATTCCTAGTTTAAGATCA
565 GC--CCGCCTC-CAC-TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
** ** * * * * * * * *
18183947 GACCAGACTGAGGGTTGCGGTAGCAAGATCGGCAGTAAGTAGAGGGGGACCCGG-CCGATCCTCT
626 GACCAGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGTAAAGGGGGACCCGGACC-ATCCCCA
* * * * * *
18184011 GCTTGTGCATCCCGACCCTCTGGCCGACTGAGCGCCC-ACACGCTCGTTTCGTGGGTTGACTTAG
690 GCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGA-ACGCTCGTTTCGTGGGTTGACTTAC
* * * *
18184075 GGATACAGA-TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT----A---AG-G---
754 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAACCATGGAGAGTTC
* * * * * * * *
18184128 ---T-CAGAC-CAGA-CCG--AGG---GA-TG-T--GGCAGCACATGCTGGGGTC-AGGCATGTG
819 ATTTCCAGTCTAAGATCAGATAGGAACGAGGGTTACGGCACCACATGCTAGGTTCGA-GCTTGTG
* *
18184177 TTGGTGCCGCATTTTTCTTCCCTGGGG
883 CTGGTGCCACATTTTTCTT--C----G
* * * ** *
18184204 CACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGTATTGGGGTTCCGGCGATCGGGGGGG
1 -----T--C-GGAGCATCGCAGGAGAACCTGACCGACGGCATTGGGGTACCGATGATCAGGGGGG
* *
18184269 CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
58 CCAGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
18184334 CTCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
123 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
* * *
18184399 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACT
188 CAGTAGCCATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
18184464 TCGAGTTTTTAGCTGAATTTTTTTGTTCTTGCCAACAAAGATACAAGGATCACGTCTACCAAGTT
253 TCGAGTTTTTAGCTGAA--------TAC--GCCAACAAAAATACAAGGATCACATCTACCAAGTT
* * * * *
18184529 TGGGGCCAAAACTCCTTTCGAAAAAATT-TTAAAAAATACCGAACCGT-AAAATTTTCAAAAATT
308 TGGGGCCAAAACTCCTTCCGAAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTCAAAAATC
* * ** * * * * *
18184592 ATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGTACCATTGTT
373 GTGAAAAATAAAAAACCAGTCATCTTACCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTA
* ** *
18184657 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
438 TCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACATACCTAAACCCACCT
* * * * * * * * *
18184722 ACCACTCTATCGATCCATGGCTTACGCGTCCCGTCTCTCTGGCGGATGTAG-TGCCCGCCTGCCC
503 ACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTCGCCGACGTAGAT---CGCCCGCCC
* * * * *
18184786 GCCCGGCCGCTC-GTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
565 GCCC-GCCTC-CACTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * * *
18184850 CCAGACCAAGGGTTGCAGCAGTAAGATCGGCAGCATGCAGAGGGGGACCC-GACTGATCCCCAGG
628 CCAGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGTAAAGGGGGACCCGGAC-CATCCCCAGC
* * * * * * *
18184914 TTGCGCATCACACCCCTC-GGGCGTGCTGA-CTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
692 TTGCGCATCCCGCCCCTCTAGCCG-GCTGAGC-ACCCGAACGCTCGTTTCGTGGGTTGACTTACG
* * * *
18184977 CATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCCTTCCCAG--T---C-T--A-AG---A
755 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAACCATGGAGAGTTCA
* * ** * * * * *
18185030 --T-C-G-----GACCAGAT-----CGAGGGTTGCGAAAGCACATGCTGGGCTCGGGCATGTGCT
820 TTTCCAGTCTAAGATCAGATAGGAACGAGGGTTACGGCACCACATGCTAGGTTCGAGCTTGTGCT
**
18185081 GGTGCCGTATTTTTCTTCG
885 GGTGCCACATTTTTCTTCG
* * * *
18185100 TCGGGGCACCATCGCCAGAGCAACGTCGGAGAACCTGATCGACGGCATTGGGGT-TC--TG-GCA
1 TC--GG-AGCAT---C---GC-A----GGAGAACCTGACCGACGGCATTGGGGTACCGATGATCA
** * * *
18185161 -----ATC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCC
52 GGGGGGCCAGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
18185220 CCCTATCTCTCATCAAACCTCTAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
117 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
*
18185285 TGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
182 TGCTGCCAGTAGCCATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
18185350 TACACTTCGGGTTTTTAGCTGAATTTTTTTATGCATACCAACAAAGATACAAGGATCACGTCTAC
247 TACACTTCGAGTTTTTAGCTGAA------TA--C--GCCAACAAAAATACAAGGATCACATCTAC
* * * *
18185415 CAAGTTTGGGGCCAAAAATCCTTTCGAAAAAAATT-TTAAAAAATACCGAACCGTAAAAAGTTTC
302 CAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTC
* * * * * * *
18185479 AAAATTTGTGAAAAATAGAAAACGATTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
366 AAAAATCGTGAAAAATAAAAAACCAGTCATCTTACCATGAAACTTCACGTGAAGCCTTAAGGGAC
* * ** * *
18185544 CATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAG
431 CATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACATACCTAAA
** * * *
18185609 CCCACCTACCACCCTATCGATCCACGGCTTGGGCGTCCCGTCTCTCTAGCGGTTACAGT-G-TCC
496 CCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTCGCCG--AC-GTAGAT-C
* * * * * *
18185672 GCCCGTCCGCCCGGCCGCTC-GTTTTGTCGGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
557 GCCCGCCCGCCC-GCCTC-CACTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
18185736 AGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGG-CTGA
620 AGATCAGACCAGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGTAAAGGGGGACCCGGAC-CA
* * * * * * *
18185800 TCCCCAGGTTACGCATCCCACCCCTCT-GTCGTGCTGACCGCCCGCACGCTCGTTTCGTGGGTTG
684 TCCCCAGCTTGCGCATCCCGCCCCTCTAGCCG-GCTGAGCACCCGAACGCTCGTTTCGTGGGTTG
* * * *
18185864 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC-CTTCC---CT-GCC-T--A
748 ACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAACCATGGA
* * * * * *
18185921 -AG---A--T-C-G-----GACCAGAT-----CGAGGGTTGCGACAACACATGCTGGGCTCGAGC
813 GAGTTCATTTCCAGTCTAAGATCAGATAGGAACGAGGGTTACGGCACCACATGCTAGGTTCGAGC
* * *
18185968 ATGTGTTGGTGCCATATTTTTCTTCG
878 TTGTGCTGGTGCCACATTTTTCTTCG
* * *
18185994 TCGGGGCACCATCGCCGGAGCAACGTCGGAGAACCTGACCGACGGCATTGGGGT-TC--TG-GCA
1 TC--GG-AGCAT---C---GC-A----GGAGAACCTGACCGACGGCATTGGGGTACCGATGATCA
*** *
18186055 -ATCGG---GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
52 GGGGGGCCAGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
18186116 CCCTATCTCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
117 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
*
18186181 TGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
182 TGCTGCCAGTAGCCATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
18186246 TACACTTCGGGTTTTTAGCTGAATGTTTTTATG-CATACCGACAAAGATACAAGGATCACGTCTA
247 TACACTTCGAGTTTTTAGCTGAA------TACGCCA-A-C-A-AAA-ATACAAGGATCACATCTA
* * * *
18186310 CCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATT-TTAAAAAATACCGAACCGTAAAAAGTTTC
301 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTC
* * * * * * *
18186374 AAAATTTGTGAAAAATAGAAAACGATTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
366 AAAAATCGTGAAAAATAAAAAACCAGTCATCTTACCATGAAACTTCACGTGAAGCCTTAAGGGAC
* ** * ** *
18186439 CATTGTATGAATTTACAAAACATAAAAATGGCATTTGCATGCAGAAATATGAAGATGTGCCTAAA
431 CATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACATACCTAAA
* * * ** *
18186504 CCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTAGTGGATGTAG-TGCCCG
496 CCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTCGCCGACGTAGAT---CG
* * *
18186568 CCCGCCCGCCCGCC-CGCTCGTTTTGT-AGGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
558 CCCGCCCGCCCGCCTC-CAC-TTTCGTCA-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * ***
18186631 AGATCAGGCAAGACCAAGGGTTGCAGCAGCAGGATCGACAGTATGCAGAGGGGGACCCGGTTGAT
620 AGATCAGACCAGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGTAAAGGGGGACCCGGACCAT
* * * * * * * * *
18186696 CCCCGGGTTGCGCATCCCACCCCTCT-GGCGTGCTGACCGCCCGCACGTTCGTTTCGTGGGATGA
685 CCCCAGCTTGCGCATCCCGCCCCTCTAGCCG-GCTGAGCACCCGAACGCTCGTTTCGTGGGTTGA
*
18186760 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-G-G---------AGT-T--CC------
749 CTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAACCATGGAG
* * * * * * * * *
18186805 --TTC----CCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
814 AGTTCATTTCCAGTCTAAGATCAGA-TAGGAACGAGGGTTACGGCACCACATGCTAGGTTCGAGC
*
18186863 ATGTGCTGGTGCCACATTTTTCTTCG
878 TTGTGCTGGTGCCACATTTTTCTTCG
* * *
18186889 TCGGGGCACCATCGCCGGAGCAACGTCGGAGAACCTGACCGACGGCATTGGGGT-TC--TG-GCA
1 TC--GG-AGCAT---C---GC-A----GGAGAACCTGACCGACGGCATTGGGGTACCGATGATCA
** * * *
18186950 -----ATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
52 GGGGGGCCAGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
18187010 CCCTATCTCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
117 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
* *
18187075 TGCTGCCAGTAGCCATTAAAATGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
182 TGCTGCCAGTAGCCATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * **
18187140 TACACTTCGGGTTTTTAGCTGAATTTTTTTATG-CATACCGACAAAGATACATGGATCATGTCTA
247 TACACTTCGAGTTTTTAGCTGAA------TACGCCA-A-C-A-AAA-ATACAAGGATCACATCTA
* * * *
18187204 CCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATT-TTAAAAAATACCGAACCGTAAAAAGTTTC
301 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTC
* * * * * * *
18187268 AAAATTTGTGAAAAATAGAAAACGATTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
366 AAAAATCGTGAAAAATAAAAAACCAGTCATCTTACCATGAAACTTCACGTGAAGCCTTAAGGGAC
* ** *
18187333 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
431 CATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACATACCTAAA
* * * * * * *
18187398 CCCACCTACCACCCTATCGATCCATGGCTTGCGCGTCCCGTCTCTCTAGCGGATGTAGTTCCCGC
496 CCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTCGCCGACGTAGAT--CGC
* * * * * * *
18187463 CCGCCCGCCCGGCCGCTC-GTTTTGTCGGTAGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAG
559 CCGCCCGCCC-GCCTC-CACTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** * * * *
18187527 ATCAGACCAGGCCAAGGGTTGCAACAGCAGGATCGGTAGCATGCAGAGGGGGACCCGG-CTGATC
622 ATCAGACCAGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGTAAAGGGGGACCCGGAC-CATC
* * * * * * * * * *
18187591 CCTAGGTTGTGCATCCCACCCCTCT-GGCGTGCTGACCGCCC-ACACGCTCGTTTTGCGGGTTTA
686 CCCAGCTTGCGCATCCCGCCCCTCTAGCCG-GCTGAGCACCCGA-ACGCTCGTTTCGTGGGTTGA
* * * * * * *
18187654 CTTAGGCATATGGAGTTCATTCCCAGTCTAACCATACGGAGTTCCTTCCCAGTCTAA-GAT--AG
749 CTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAACCATGGAG
* * * * * * *
18187716 -G---A----C---C--AGA-C---------CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
814 AGTTCATTTCCAGTCTAAGATCAGATAGGAACGAGGGTTACGGCACCACATGCTAGGTTCGAGCT
18187758 TGTGCTGGTGCCACATTTTTCTTCG
879 TGTGCTGGTGCCACATTTTTCTTCG
* * * *
18187783 TCAGGGCACCATCGCCGAAGCATTGTCGGAGAACCTGATCGACGGCATTGGGGT-TC--TG-GCA
1 TC--GG-AGCAT---C---GCA-----GGAGAACCTGACCGACGGCATTGGGGTACCGATGATCA
*** *
18187844 -ATCGG---GGGGGTGTGCGA-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
52 GGGGGGCCAGGGGGTGTAC-ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
18187904 CCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
116 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
* *
18187969 TTGCTGCCAATAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
181 TTGCTGCCAGTAGCCATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* ** * *
18188034 GTACACTTCGGGTTTTTAGCTGAACTTTTTTGTGCATACCAACAAAGATACAAGGATCACGTCTA
246 GTACACTTCGAGTTTTTAGCTGAA--------T--ACGCCAACAAAAATACAAGGATCACATCTA
* * * * *
18188099 CCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATT-TTAAAAAATACCGAACCGTAAGAAGTTTC
301 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTC
* * * * * *
18188163 AAAATTTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
366 AAAAATCGTGAAAAATAAAAAACCAGTCATCTTACCATGAAACTTCACGTGAAGCCTTAAGGGAC
* ** *
18188228 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
431 CATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACATACCTAAA
* * * **
18188293 CCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGGTGGACGTAG-TGCCCG
496 CCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTCGCCGACGTAGAT---CG
* * * *
18188357 CCCGCTCGCCCGCC-CGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
558 CCCGCCCGCCCGCCTC-CAC-TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * ** * * * * * * *
18188421 GATTGGACAAGACCAAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGTGACCCGG-CTGAT
621 GATCAGACCAGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGTAAAGGGGGACCCGGAC-CAT
* * * * * * *
18188485 CCCCGGATTGCGCATCCCGCCCCTTTCGCCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGGC
685 CCCCAGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGAACGCTCGTTTCGTGGGTTGAC
* * * *
18188550 TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTC-TTTCC---C-AATC-T--A-A
750 TTACGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAACCATGGAGA
* * * * * * * *
18188606 G---------A-TC--AG---AG-T-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCAT
815 GTTCATTTCCAGTCTAAGATCAGATAGGAACGAGGGTTACGGCACCACATGCTAGGTTCGAGCTT
* * *
18188654 GTTCTGGTGCCGCATTATTCTTCG
880 GTGCTGGTGCCACATTTTTCTTCG
* * * ** *
18188678 TCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGATCGACGGCATTGGGGTTCCGGCGATCG
1 TC--GG-AGCAT---C---G---CA--GGAGAACCTGACCGACGGCATTGGGGTACCGATGATCA
* * * *
18188743 GGGGGGCCAGTGGGGTGTGCGCATATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGC
52 GGGGGGCCAG-GGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
** * *
18188808 CTTCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
116 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
* * * * *
18188873 TTGCTGCTAGTAGCCATTAAAGTGTCTGACATGGGGACACTTTTTTCGAATGGTCACAAAATCTT
181 TTGCTGCCAGTAGCCATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
18188938 GTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
246 GTACACTTCGAGTTTTTAGCTGAA--------T--ACGCCAACAAAAATACAAGGATCACATCTA
** * * *
18189003 CC-AGTTT-GGGCCAAAACTCCTTCCGAAAAAATT-TAAAAAAATCCCGAACAGAAAAAACTTTC
301 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTC
* * * * * *
18189065 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
366 AAAAATCGTGAAAAATAAAAAACCAGTCATCTTACCATGAAACTTCACGTGAAGCCTTAAGGGAC
* ** *
18189130 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
431 CATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACATACCTAAA
* * * * * * *
18189195 CCCACCTACCACCCTATCGATCCATGGCTTGCGCGTCCCGTCTCTCTAGCGGATGTAGTTCCCGC
496 CCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTCGCCGACGTAGAT--CGC
* * * * * * *
18189260 CCGCCCGCCCGGCCGCTC-GTTTTGTCGGTAGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAG
559 CCGCCCGCCC-GCCTC-CACTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** * * * *
18189324 ATCAGACCAGGCCAAGGGTTGCAACAGCAGGATCGGTAGCATGCAGAGGGGGACCCGG-CTGATC
622 ATCAGACCAGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGTAAAGGGGGACCCGGAC-CATC
* * * * * ** * * * *
18189388 CCTAGGTTGTGCATCCCACCCCTCTGGCATGCTGACCGCCC-ACACGCTCGTTTTGTGGGTTTAC
686 CCCAGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGA-ACGCTCGTTTCGTGGGTTGAC
* * * * * * *
18189452 TTAGGCATATGGAGTTCATTCCCAGTCTAACCATACGGAGTTCCTTCCCAGTCTAA-GAT--AG-
750 TTACGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAACCATGGAGA
* * * * * * *
18189513 G---A----C---C--AGA-C---------CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
815 GTTCATTTCCAGTCTAAGATCAGATAGGAACGAGGGTTACGGCACCACATGCTAGGTTCGAGCTT
18189556 GTGCTGGTGCCACATTTTTCTTCG
880 GTGCTGGTGCCACATTTTTCTTCG
* * * *
18189580 TCGGGGCACCATCGCCGAAGCATTGTCGGAGAACCTGATCGACGGCATTGGGGT-TC--TG-GCA
1 TC--GG-AGCAT---C---GCA-----GGAGAACCTGACCGACGGCATTGGGGTACCGATGATCA
*** *
18189641 -ATCGG---GGGGGTGTGCGA-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
52 GGGGGGCCAGGGGGTGTAC-ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
18189701 CCCCTATCTCTCATCAAACCTCGAGAACTTACACCCCCTTAAAAAGCATTTGAGATTTTACAGGT
116 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
* * *
18189766 TTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
181 TTGCTGCCAGTAGCCATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
18189831 GTACACTTCGAGTTTTTAGCTGAATTTTTTTTGGATGCCAAAAAAAATACAAGGATCACATCTAC
246 GTACACTTCGAGTTTTTAGCTGAA-------T--ACGCCAACAAAAATACAAGGATCACATCTAC
** * * ** * *
18189896 CAAGTTT-GGGCGGAAACTCCTTCCAAAAAAATT-TTAAAAAATCCCAAACTGTAAAAAGTTTCA
302 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTCA
* * * * * *
18189959 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
367 AAAATCGTGAAAAATAAAAAACCAGTCATCTTACCATGAAACTTCACGTGAAGCCTTAAGGGACC
* ** ** *
18190024 ATTGTATGAATTTACAAGATATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
432 ATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACATACCTAAAC
* * ** *
18190089 CCACTTGCCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGA-GTAG-T-GCCCG
497 CCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTCGCCGACGTAGATCGCCCG
* * * *
18190151 CCCGCCAGCCGCATGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
562 CCCG-C--CCGCCTCCAC-TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * ** *
18190216 TCAGATCGGACCTGAGGGTT-TAACGGGTACAAGATCGACAGCCACACAGAGGGGGACCCGG-CC
623 TCAGACCAGACC-AAGGGTTGTAGC-AG--CAGGATCGACAG-CACGTAAAGGGGGACCCGGACC
* * * * *
18190279 GATCCCC-GACTTGTGCATCCCCGCCCCTCTGGCCGGCTTGAGC-GCCGTACGCTCCGTTTCATA
683 -ATCCCCAG-CTTGCGCAT-CCCGCCCCTCTAGCCGGC-TGAGCACCCGAACGCT-CGTTTC--G
* * * * *
18190342 TGGGTCGACTTAGGCATACGGAG-CCATT-CCAGTCTAAAGCATATAGAGTTCATTCCCAGGT-T
741 TGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCT-AAGCATACAGAGTTCATTTCCA-GTCT
* ** ** *
18190404 ---C-T--A-AG---A--T-C-G-----GACCAGA-CCG---GAGGGTTGTGGCAAGCAACCATG
804 AACCATGGAGAGTTCATTTCCAGTCTAAGATCAGATAGGAACGAGGGTTACGGC-A-CCA-CATG
* * * **
18190446 CTTAGGCTCGGGTCATGTGCTGGTGCTGCATTTTTCTTCG
866 C-TAGGTTCGAG-CTTGTGCTGGTGCCACATTTTTCTTCG
* * * **
18190486 TCGAGGGCACCATCGCCGGAGCATCACCGGAGCACCTGAACCGGTGGCATTGGGGTTTCGATGAT
1 TC---GG-AGCATCGCAGGAG-A--ACC--TG-ACC-G-A-C---GGCATTGGGGTACCGATGAT
* * * *
18190551 CA-GGGGCCCAAGGGGGGGGTGGGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTA
50 CAGGGGGGCC-A---GGGGGT--GTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
18190615 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTTAAAGAGCATTTGAGATT
109 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATT
* * * *
18190679 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
173 TTACAAGTTTGCTGCCAGTAGCCATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCAC
*
18190744 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
238 AAAATCTTGTACACTTCGAGTTTTTAGCTGAA--------T--ACGCCAACAAAAATACAAGGAT
* ** *
18190809 CACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATT-TAAAAAAATCCCGAACAG-AA
293 CACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTATAAAAAAATAGCGAACCGTAA
* * * * * *
18190871 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
358 AAAGTTTCAAAAATCGTGAAAAATAAAAAACCAGTCATCTTACCATGAAACTTCACGTGAAGCCT
* ** * *
18190936 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATGTGAAGA-A
423 TAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGACA
* * * * * * * *
18191000 GTGCCTAAAACCACCTACCACCCTATAGATCCATGGCTTGCGCATCCAGTCTCTCTGGCTGACGT
488 -TACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTCGCCGACGT
* * * *
18191065 AG-T-GCCCGCCTGCCCG--TTCA-TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
552 AGATCGCCCGCCCGCCCGCCTCCACTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * * * * * *
18191125 CTAACATTGGACCAGACCGAGGGTTGCAGTAGCAGGAT-GGCAGCATGTAGA-GGGGA-CC-GAT
617 CTAAGATCAGACCAGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGTAAAGGGGGACCCGGA-
* * * * * *
18191186 CGAT-CCCTGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCTCGCA-GC-CGTTTCGTGGGT
681 CCATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGAACGCTCGTTTCGTGGGT
* * ** *
18191247 TGACTTAGGCA-ACGGAGTTCATT-CCAGTCTTAGCATATGGAGTTCATTCCCAGTC
746 TGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTC
18191302 CTAAGATCGA
Statistics
Matches: 8451, Mismatches: 957, Indels: 1152
0.80 0.09 0.11
Matches are distributed among these distances:
884 1 0.00
885 1 0.00
886 2 0.00
887 1 0.00
888 9 0.00
889 3 0.00
890 23 0.00
891 65 0.01
892 310 0.04
893 708 0.08
894 1361 0.16
895 1335 0.16
896 297 0.04
897 32 0.00
898 35 0.00
899 60 0.01
900 39 0.00
901 344 0.04
902 1046 0.12
903 192 0.02
904 265 0.03
905 44 0.01
906 91 0.01
907 333 0.04
908 17 0.00
909 11 0.00
910 6 0.00
911 8 0.00
912 8 0.00
913 1 0.00
914 8 0.00
915 66 0.01
916 2 0.00
917 3 0.00
918 5 0.00
919 16 0.00
920 8 0.00
921 367 0.04
922 101 0.01
923 98 0.01
924 106 0.01
925 4 0.00
927 9 0.00
928 10 0.00
929 12 0.00
930 10 0.00
931 7 0.00
935 3 0.00
936 2 0.00
937 2 0.00
938 2 0.00
939 1 0.00
942 6 0.00
943 5 0.00
945 1 0.00
946 2 0.00
948 4 0.00
950 2 0.00
951 2 0.00
953 6 0.00
954 3 0.00
956 3 0.00
957 5 0.00
958 3 0.00
961 2 0.00
962 11 0.00
963 2 0.00
964 12 0.00
965 23 0.00
966 8 0.00
967 14 0.00
968 9 0.00
969 4 0.00
970 9 0.00
971 4 0.00
972 6 0.00
973 11 0.00
974 4 0.00
975 2 0.00
976 6 0.00
978 1 0.00
979 2 0.00
980 2 0.00
981 2 0.00
983 1 0.00
985 1 0.00
986 5 0.00
987 7 0.00
988 10 0.00
989 7 0.00
990 2 0.00
991 6 0.00
992 11 0.00
993 2 0.00
994 13 0.00
995 5 0.00
996 9 0.00
997 27 0.00
998 28 0.00
999 10 0.00
1000 5 0.00
1001 14 0.00
1002 2 0.00
1003 10 0.00
1004 6 0.00
1005 2 0.00
1006 7 0.00
1007 10 0.00
1008 7 0.00
1009 4 0.00
1010 1 0.00
1012 1 0.00
1014 2 0.00
1015 2 0.00
1016 2 0.00
1017 1 0.00
1019 6 0.00
1020 2 0.00
1021 4 0.00
1022 11 0.00
1023 12 0.00
1024 297 0.04
1025 373 0.04
1026 333 0.04
1027 528 0.06
1028 347 0.04
1029 544 0.06
1030 366 0.04
1031 378 0.04
1032 455 0.05
1033 335 0.04
1034 211 0.02
1035 283 0.03
1036 271 0.03
1037 230 0.03
1038 241 0.03
1039 310 0.04
1040 295 0.03
1041 222 0.03
1042 293 0.03
1043 263 0.03
1044 225 0.03
1045 273 0.03
1046 261 0.03
1047 221 0.03
1048 363 0.04
1049 133 0.02
1050 291 0.03
1051 159 0.02
1052 242 0.03
1053 126 0.01
1054 126 0.01
1055 437 0.05
1056 145 0.02
1057 151 0.02
1058 112 0.01
1059 202 0.02
1060 296 0.04
1061 183 0.02
1062 117 0.01
1063 93 0.01
1064 97 0.01
1065 91 0.01
1066 93 0.01
1067 105 0.01
1068 128 0.02
1069 76 0.01
1070 47 0.01
1071 68 0.01
1072 267 0.03
1073 40 0.00
1074 46 0.01
1075 51 0.01
1076 72 0.01
1077 216 0.03
1078 59 0.01
1079 57 0.01
1080 39 0.00
1081 82 0.01
1082 42 0.00
1083 236 0.03
1084 21 0.00
1085 18 0.00
1086 11 0.00
1087 111 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
TCGGAGCATCGCAGGAGAACCTGACCGACGGCATTGGGGTACCGATGATCAGGGGGGCCAGGGGG
TGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
ATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
CGAAAAAATTATAAAAAAATAGCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACCA
GTCATCTTACCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATCAATTTACAAGCCATAA
AAATGGCATTGGCATGCAGAAATATGAAGACATACCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCACATCCCGTCTCTCTCGCCGACGTAGATCGCCCGCCCGCCCGCCTCCACTTTCGTCAG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTAGCAGCA
GGATCGACAGCACGTAAAGGGGGACCCGGACCATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCG
GCTGAGCACCCGAACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAG
CATACAGAGTTCATTTCCAGTCTAACCATGGAGAGTTCATTTCCAGTCTAAGATCAGATAGGAAC
GAGGGTTACGGCACCACATGCTAGGTTCGAGCTTGTGCTGGTGCCACATTTTTCTTCG
Found at i:18182125 original size:26 final size:26
Alignment explanation
Indices: 18182089--18182141 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18182079 GTTGACTTAC
*
18182089 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
*
18182115 GCATATGGAGTCCATTCCTAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
18182141 G
1 G
18182142 ATTGAACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTCCATTCCCAGTCTAA
Found at i:18182180 original size:184 final size:185
Alignment explanation
Indices: 18181930--18182354 Score: 559
Period size: 184 Copynumber: 2.3 Consensus size: 185
18181920 GTTGGCTTAG
* * *
18181930 GCATACGGAGTTCATTCCTAGTCTAAGA-TCAGACCAGACCAAGGGTTGTAGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGA-ACCAGACCAAGGGTTGTGGCAGTAGGATCGAC
* * * * *
18181994 AGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGTCG-GCTGAGC
65 AGCACGCAGAGGGGGACCCGGCCAATCCCCAGCTTGCACATCCCACCCCTCTAG-CGTGCTGAGC
* * * *
18182058 ACCCGAACGCTCGTTTCGTGGGTTGACTTACGCATATGGAGTTCATTCCCAGTCTAA
129 ACCCGAACGCTCGTTTCATGGGTTAACTTACGCATACGGAGTGCATTCCCAGTCTAA
* * *
18182115 GCATATGGAGTCCATTCCTAGTCTAAGATTGAACCCGACC-AGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGAACCAGACCAAGGGTTGTGGCAGTAGGATCGACA
** * *
18182179 GCACGCAGAGGGGGACCCGGCCAATCTGCAGGTTGCACATCCCACCCCTCTAGCGTGCTGAGCGC
66 GCACGCAGAGGGGGACCCGGCCAATCCCCAGCTTGCACATCCCACCCCTCTAGCGTGCTGAGCAC
* *
18182244 CCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTGCATTCCCAGTCTAA
131 CCGAACGCTCGTTTCATGGGTTAACTTACGCATACGGAGTGCATTCCCAGTCTAA
* * * * * * *
18182299 ACATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGTA
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGAACCAGACCAAGGGTTGTGGCAGTA
18182355 CATGCTGGGC
Statistics
Matches: 208, Mismatches: 29, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
183 2 0.01
184 157 0.75
185 47 0.23
186 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATTGAACCAGACCAAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGAGGGGGACCCGGCCAATCCCCAGCTTGCACATCCCACCCCTCTAGCGTGCTGAGCAC
CCGAACGCTCGTTTCATGGGTTAACTTACGCATACGGAGTGCATTCCCAGTCTAA
Found at i:18182314 original size:26 final size:26
Alignment explanation
Indices: 18182274--18182324 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18182264 TTAACTTAGG
18182274 CATACGGAGTGCATTCCCAGTCTAAA
1 CATACGGAGTGCATTCCCAGTCTAAA
*
18182300 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTGCATTCCCAGTCTAA
18182325 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
CATACGGAGTGCATTCCCAGTCTAAA
Found at i:18183208 original size:26 final size:26
Alignment explanation
Indices: 18183172--18183224 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18183162 GTTGACTTAG
*
18183172 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18183198 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18183224 G
1 G
18183225 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18185012 original size:26 final size:26
Alignment explanation
Indices: 18184976--18185028 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18184966 GTTGACTTAG
18184976 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
18185002 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18185028 G
1 G
18185029 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:18185921 original size:26 final size:26
Alignment explanation
Indices: 18185870--18185922 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18185860 GTTGACTTAG
*
18185870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
18185896 GCATACGGAGTTCCTTCCCTGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
18185922 G
1 G
18185923 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:18186658 original size:895 final size:895
Alignment explanation
Indices: 18182115--18193934 Score: 15564
Period size: 895 Copynumber: 13.2 Consensus size: 895
18182105 CCCAGTCTAA
* * * * * ** * * *
18182115 GCATATGGAGTCCATTCCTAGTCTAAGAT-TGAACCCGACC-AGGGTTGTGGCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGCAGCAGCAAGATCGGC
** ** * *
18182178 AGCACGCAGAGGGGGACCCGGCCAATCTGCAGGTTGCACATCCCACCCCTCTAG-CGTGCTGAGC
65 AGCACGCAGAGGGGGACCCGGCTGATCCCCAGGTTGCGCATCCCACCCCTCTGGCCG-GCTGAGC
* * * *
18182242 GCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTGCATTCCCAGTCTAAACATACGG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
18182307 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGTACATGCTGGGCTCGAGCA
194 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* *
18182372 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
259 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
*
18182437 GACGGCATTGGGGTTCCGGCAATCGGGGGGGCTGCT-CGCACATGATGTACGATGGGTGCTAGG-
324 GACGGCATTGGGGTTCCGGCAATCGGGGGGG-TG-TGCGCACATGATGTGCGATGGGTGCT-GGT
* *
18182500 ACTTGGCCCTTATATTGGCCCCCTATCCCTCA-CAAACCTCGAGAACTCTCGCCCCCTTAAAGAG
386 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
18182564 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTAAAATGGGGACACTTTTTT
451 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
18182629 CAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATATTTTTGTGCATGCCAACAAA
516 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
18182694 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAGTCC-TTCTGAAAAAATTTTAAAAAAT-
581 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATA
*
18182757 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTT
645 C-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* ** **
18182822 CACATGAAGGCTTGGGGGACCACAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
709 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
18182887 AATAAGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCT
774 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
18182952 CTGACCGACGTAGTGCCCGGCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAG
839 CTGGCGGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCG-T--TTT-GTCGGTTGGCTTAG
* * * * *
18183013 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACAAGACCGAGGGTTGCAGCAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
* * * * * * ** *
18183078 GCACACAGAGGGGGACCCGACCGAT-CCCTGGCTTGTGCATCCCGCCGTTCTGGCCGGCTGAGCA
66 GCACGCAGAGGGGGACCCGGCTGATCCCCAGG-TTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
* *
18183142 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
** * * * *
18183207 GTTCATTCCCAGTCTAAGATCGGACTGGACGGAGGGTTGCGGCATCACATGCTGGGCTAGGGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * * ** *
18183272 GTTCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCAAAGCATCGCCGGAGAACCTGACCG
260 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * * * *
18183337 GCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTCCACACATGATGTGCAATGGGTGC
325 ACGGCATTGGGGTTCCGGCAATC------G--GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
18183402 TGGTACTTGGCTCTTACATTGGCCCGCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
382 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
18183467 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
447 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
18183532 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
512 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
18183597 AAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAA
577 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
* * * * * *
18183661 ATTCTCAAACCGCAAAAAGTTTAAAAAATCCTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
642 ATAC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
18183726 CTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
706 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
18183791 AGAAATATGAAGATGTGCCTCAACCCACCTACCACACTATCGATGCACGGCTTGCGCATCCCGTC
771 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * ** *
18183856 TCTCCGGTCGG-CGTAGTGCCCGCTCGCCCATCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
836 TCTCTGG-CGGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
* * * * ** * *
18183916 GCAAATGGAGTTCATTCCTAGTTTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
* * * * * * * * *
18183981 GTAAGTAGAGGGGGACCCGGCCGATCCTCTGCTTGTGCATCCCGA-CCCTCTGGCCGACTGAGCG
66 GCACGCAGAGGGGGACCCGGCTGATCCCCAGGTTGCGCATCCC-ACCCCTCTGGCCGGCTGAGCG
* * *
18184045 CCCACACGCTCGTTTCGTGGGTTGACTTAGGGATACAGA-TTCATTCCCAGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * *
18184109 GTTCATTCCCAGTCTAAGGTCAGACCAGACCGAGGGATGTGGCAGCACATGCTGGGGTCAGGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * * * *
18184174 GTGTTGGTGCCGCATTTTTCTTC-CCTGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACC
260 GTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* * *
18184238 GACGGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTG
324 GACGGCATTGGGGTTCCGGCAATC------G--GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
18184303 CTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCTAGAACTCACACCCCCTTA
381 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
18184368 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
446 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
18184433 TTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCTTGCCA
511 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
18184498 ACAAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
576 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
* * * *
18184563 AATACCGAACCGT-AAAATTTTCAAAAATTATGAAAAATAGAAAATGAGTCATCTTGCCATGAAA
641 AATACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
18184627 CTTCATGTGAAGGCTTAAGGTACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGC
706 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * *
18184692 AGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATGGCTTACGCGTCCCGTC
771 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
18184757 TCTCTGGCGGATGTAGTGCCCGCCTGCCCGCCCGGCCGCTCGTTTTGTCGGTTGGCTTAG
836 TCTCTGGCGGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
* *
18184817 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCAGCAGTAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
* * * *
18184882 GCATGCAGAGGGGGACCCGACTGATCCCCAGGTTGCGCATCACACCCCTC-GGGCGTGCTGA-CT
66 GCACGCAGAGGGGGACCCGGCTGATCCCCAGGTTGCGCATCCCACCCCTCTGGCCG-GCTGAGC-
*
18184945 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
18185010 AGTTCCTTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGAAAGCACATGCTGGGCTCGGGCA
194 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
** * * *
18185075 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCAACGTCGGAGAACCTGATC
259 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
*
18185140 GACGGCATTGGGGTTCTGGCAATC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
324 GACGGCATTGGGGTTCCGGCAATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
18185203 TGGCCCTTAAATTGGCCCCCTATCTCTCATCAAACCTCTAGAATTCACACCCCCTTAAAGAGCAT
389 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
18185268 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAA
454 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
18185333 ATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTATGCATACCAACAAAGAT
519 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
*
18185398 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAAATTTTAAAAAATACCG
584 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAAAATTTTAAAAAATACCG
* ** * *
18185463 AACCGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGATTCATCTTGCCATGAAACTTCACG
648 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
18185528 TGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATA
713 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
18185593 TGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGGGCGTCCCGTCTCTCTAG
778 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
18185658 CGGTTAC--AGTGTCCGCCCGTCCGCCCGGCCGCTCGTTTTGTCGGTAGGCTTAG
843 CGG--ACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
18185711 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
* * * *
18185776 GCATGCAGAGGGGGACCCGGCTGATCCCCAGGTTACGCATCCCACCCCTCT-GTCGTGCTGACCG
66 GCACGCAGAGGGGGACCCGGCTGATCCCCAGGTTGCGCATCCCACCCCTCTGGCCG-GCTGAGCG
18185840 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
18185905 GTTCCTTCCCTGCCTAAGATCGGACCAGATCGAGGGTTGCGACAACACATGCTGGGCTCGAGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * *
18185970 GTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAACGTCGGAGAACCTGACCG
260 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* *
18186035 ACGGCATTGGGGTTCTGGCAATCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
325 ACGGCATTGGGGTTCCGGCAATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
18186100 GGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATT
390 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
18186165 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAA
455 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * * *
18186230 TGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATGTTTTTATGCATACCGACAAAGATA
520 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
*
18186295 CAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATACCGAA
585 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATACCGAA
* ** * *
18186360 CCGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGATTCATCTTGCCATGAAACTTCACGTG
650 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
** *
18186425 AAGGCTTAAGGGACCATTGTATGAATTTACAAAACATAAAAATGGCATTTGCATGCAGAAATATG
715 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * *
18186490 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTAGTG
780 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCG
* * *
18186555 GATGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTAGGTAGGCTTAG
845 GACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
* * * *
18186606 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGCAAGACCAAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
* * * * *
18186671 GTATGCAGAGGGGGACCCGGTTGATCCCCGGGTTGCGCATCCCACCCCTCTGG-CGTGCTGACCG
66 GCACGCAGAGGGGGACCCGGCTGATCCCCAGGTTGCGCATCCCACCCCTCTGGCCG-GCTGAGCG
* *
18186735 CCCGCACGTTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
18186800 GTTCCTTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
*
18186865 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAACGTCGGAGAACCTGACCG
260 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
*
18186930 ACGGCATTGGGGTTCTGGCAATC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
325 ACGGCATTGGGGTTCCGGCAATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
18186994 GGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATT
390 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
18187059 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTGTGAAATGGGGACACTTTTTTCAAA
455 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * *
18187124 TGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTATGCATACCGACAAAGATA
520 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
18187189 CATGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATACCGAA
585 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATACCGAA
* ** * *
18187254 CCGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGATTCATCTTGCCATGAAACTTCACGTG
650 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
18187319 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
715 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * *
18187384 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCGTCCCGTCTCTCTAGCG
780 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCG
* * * *
18187449 GATGTAGTTCCCGCCCGCCCGCCCGGCCGCTCGTTTTGTCGGTAGGCTTAG
845 GACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
* * * * * *
18187500 GCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGGCCAAGGGTTGCAACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
* * * *
18187565 GCATGCAGAGGGGGACCCGGCTGATCCCTAGGTTGTGCATCCCACCCCTCTGG-CGTGCTGACCG
66 GCACGCAGAGGGGGACCCGGCTGATCCCCAGGTTGCGCATCCCACCCCTCTGGCCG-GCTGAGCG
* * * * * *
18187629 CCCACACGCTCGTTTTGCGGGTTTACTTAGGCATATGGAGTTCATTCCCAGTCTAACCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
18187694 GTTCCTTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * * *
18187759 GTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGAAGCATTGTCGGAGAACCTGATCG
260 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* *
18187824 ACGGCATTGGGGTTCTGGCAATCGGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTT
325 ACGGCATTGGGGTTCCGGCAATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
18187889 GGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
390 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
18187954 TGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAA
455 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
18188019 TGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAACTTTTTTGTGCATACCAACAAAGATA
520 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
*
18188084 CAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATACCGAA
585 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATACCGAA
* * ** *
18188149 CCGTAAGAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
650 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
18188214 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
715 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* *
18188279 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGGTG
780 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCG
* ** *
18188344 GACGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAG
845 GACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
* ** * * *
18188395 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACAAGACCAAGGGTTGCGGTAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
* * * * * *
18188460 GCACGCAGAGGGTGACCCGGCTGATCCCC-GGATTGCGCATCCCGCCCCTTTCGCCGACTGAGCA
66 GCACGCAGAGGGGGACCCGGCTGATCCCCAGG-TTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
* * *
18188524 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *** * *
18188589 GTTCTTTCCCAATCTAAGATCAGAGTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * * * * *
18188654 GTTCTGGTGCCGCATTATTCTTCGTCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGATCG
260 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * *
18188719 ACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGTGGGGTGTGCGCATATGATGTACGATGGGTG
325 ACGGCATTGGGGTTCCGGCAATC-----GG---G-GGGGTGTGCGCACATGATGTGCGATGGGTG
** *
18188784 CTGGTACTTGGCCCTTATATTGGCCTTCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
381 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
18188849 AAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGACATGGGGACACT
446 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
18188914 TTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
511 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
18188979 ACAAAAATACAAGGATCACGTCTACC-AGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTAAAAA
576 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
* * * *
18189042 AATCCCGAACAGAAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
641 AATACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
18189107 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
706 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
18189172 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCGTCCCGTC
771 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
18189237 TCTCTAGCGGATGTAGTTCCCGCCCGCCCGCCCGGCCGCTCGTTTTGTCGGTAGGCTTAG
836 TCTCTGGCGGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
* * * * * *
18189297 GCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGGCCAAGGGTTGCAACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
* * * ** *
18189362 GCATGCAGAGGGGGACCCGGCTGATCCCTAGGTTGTGCATCCCACCCCTCTGGCATGCTGACCGC
66 GCACGCAGAGGGGGACCCGGCTGATCCCCAGGTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * * * *
18189427 CCACACGCTCGTTTTGTGGGTTTACTTAGGCATATGGAGTTCATTCCCAGTCTAACCATACGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* *
18189492 TTCCTTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
196 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* * *
18189557 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATTGTCGGAGAACCTGATCGA
261 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
* *
18189622 CGGCATTGGGGTTCTGGCAATCGGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTG
326 CGGCATTGGGGTTCCGGCAATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
18189687 GCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTTACACCCCCTTAAAAAGCATTT
391 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
18189752 GAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
456 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
18189817 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGGATGCCAAAAAAAATAC
521 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* ** * * * *
18189881 AAGGATCACATCTACCAAGTTT-GGGCGGAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAAC
586 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATACCGAAC
*
18189945 TGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
651 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
**
18190010 AGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCATTGGCATGCAGAAATATGA
716 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * *
18190075 AGATGTGCCTAAACCCACTTGCCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCG
781 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGG
* ** *
18190140 A-GTAGTGCCCGCCCGCCAG-CCGCATGCTCGTTTCGTCGGTTGGCTTAG
846 ACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
* * * * * *
18190188 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCTGAGGGTT-TAACGGGTACAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTTGCAGC-AG--CAAGATC
* * * * * *
18190252 GACAGCCACACAGAGGGGGACCCGGCCGATCCCC-GACTTGTGCATCCCCGCCCCTCTGGCCGGC
62 GGCAG-CACGCAGAGGGGGACCCGGCTGATCCCCAG-GTTGCGCAT-CCCACCCCTCTGGCCGGC
* * * *
18190316 TTGAGCG-CCGTACGCTCCGTTTCATATGGGTCGACTTAGGCATACGGAG-CCATT-CCAGTCTA
124 -TGAGCGCCCGCACGCT-CGTTTC--GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-
** * *
18190378 AAGCATATAGAGTTCATTCCCAGGTTCTAAGATCGGACCAGACCGGAGGGTTGTGGCAAGCAACC
184 AAGCATACGGAGTTCATTCCCA-G-TCTAAGATCGGACCAGACC-GAGGGTTGCGAC-AGC-A-C
* **
18190443 ATGCTTAGGCTCGGGTCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGGCACCATCGCCGGAGC
243 ATGC-TGGGCTCGGG-CATGTGCTGGTGCCACATTTTTCTTCGTCG-GGGCACCATCGCCGGAGC
** * ** *
18190508 ATCACCGGAGCACCTGAACCGGTGGCATTGGGGTTTCGATGATCAGGGGCCCAA-GGGGGGGGTG
305 ATCGTCGGAGAACCTG-ACCGACGGCATTGGGG-TTC------C---GG--CAATCGGGGGGGT-
*
18190572 GGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
356 -GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
18190637 AAACCTCGAGAACTCAC-CCCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
420 AAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
18190701 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
484 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
18190766 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCC
549 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
18190830 AAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACAG-AAAAAGTTTCAAAAATCATGAAAAA
614 AAAACTCCTTTCGAAAAAATTTTAAAAAATACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
18190894 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
679 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** * * * *
18190959 CAAGCCATAAAAATGGCATTGGCACACAAAAATGTGAAGAAGTGCCTAAAACCACCTACCACCCT
744 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
18191024 ATAGATCCATGGCTTGCGCATCCAGTCTCTCTGGCTGACGTAGT--------GCCCGCCTGCCCG
809 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGGACGTAGTGCCCGCCCGCCCGCCCGCCCG
* *
18191081 TTCATTTTGTCGGTTGGCTTAG
874 CTCGTTTTGTCGGTTGGCTTAG
* ** * * *
18191103 GCATACGGAGTTCATTCCCAGTCTAACATTGGACCAGACCGAGGGTTGCAGTAGCAGGAT-GGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
* * * * * *
18191167 GCATGTAGA-GGGGA-CC-GATCGAT-CCCTGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCG
66 GCACGCAGAGGGGGACCCGGCT-GATCCCCAGGTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
* * *
18191227 CTCGCA-GC-CGTTTCGTGGGTTGACTTAGGCA-ACGGAGTTCATT-CCAGTCTTAGCATATGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
18191288 GTTCATTCCCAGTCCTAAGATC-GA-CTGAAC--GCGTAGCG-GAG-ACAT-TTGGGCT-GGGCA
195 GTTCATTCCCAGT-CTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
** *
18191345 -------GT-CC-CATTTTTCTTC--AAGGGTA-C-T----GG-GCAATCGT-GGAGAACCTGA-
259 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGC-ATCGTCGGAGAACCTGAC
*
18191390 CG--GGCA-T-GGG-T-C-GC--TAGGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTAC
323 CGACGGCATTGGGGTTCCGGCAATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
18191445 TTGGCCCTTATATTGG-CCCCTAT-CC-CATCAAACCTCGAGAACTCACACCGCTTTAAGAGAGG
388 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA-AGA-G
* *
18191507 C-TTTGCAGATTTTATAAGGTTTACTGCCTAGTAGCCATTAAAAAAGTGTCCTGAAATGGGGACA
451 CATTTG-AGATTTTA-CAGGTTTGCTGCC-AGTAGCCATT---AAAGTGT-CTGAAATGGGGACA
18191571 CTTTTTTCGAAATTGGTCACAAAATCTTGTAGCACGTTCGAGTTATTTAGCTGAATTTTTTTGTG
509 CTTTTTTC-AAA-TGGTCACAAAATCTTGTA-CAC-TTCGAGTT-TTTAGCTGAATTTTTTTGTG
* *
18191636 CATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAAT
569 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* **
18191701 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
634 TTTAAAAAATACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
18191766 CATCAAACTTCACGTGAATGCTTAATGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATT
699 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * *
18191831 GGCACACAAAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
764 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
18191896 TCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
829 TCCCGTCTCTCTGGCGGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTT
18191953 AG
894 AG
* * * * *
18191955 GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
* * * * * * * * *
18192020 TCACGTAGAGGGGGACGCGACCGATCCCC-GACTTGCGCATGCCGCCCCTCTGGCCGACTGAGCG
66 GCACGCAGAGGGGGACCCGGCTGATCCCCAG-GTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
18192084 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** * * * *
18192149 GTTCATTCCCAGTCTAAGATCGAACTGGACCGATGCTTGCGACAGCACATGCTGGGCTTGAGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * * * *
18192214 GTACTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTAGGAGAACCTGACCG
260 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* *
18192279 ACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGC
325 ACGGCATTGGGGTTCCGGCAATC------G--GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
18192344 AGGTACTTGGCCCTTATATTAGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAA
382 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
18192409 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
447 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
18192474 TTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAA
512 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * * *
18192539 CAATAATATAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATTTTAAAAA
577 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
* * * *
18192604 GT-CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
642 ATAC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *** *
18192668 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGATGTTGGTATGC
706 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * * *
18192733 AGAAATATGAAGATGTCCCTAAAGCCACTTACCACCCTATCGATCAACGGCTTGAGCATCCCGTC
771 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
18192798 TCTCTGGCCGG-CGTA--G--CGCCCGCCTGCCCGCCCGCTCGTTTCGTCCGTTGGCTTGG
836 TCTCTGG-CGGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
* * * * * * * * *
18192854 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAA-GGTT-CCGATAGTAGGATTGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTTGCAG-CAGCAAGATCGG
** * * *
18192917 CAGCACATAGAGGGGGACCCGGCCGAT-CCCTGAGTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
64 CAGCACGCAGAGGGGGACCCGGCTGATCCCCAG-GTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * *
18192981 CGCTCC-CACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATAG
128 CGC-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * **
18193045 GGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGC-AGCAGCACATATTGGGCTCGG
192 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGG
* * * * *
18193109 GCATGTGCTAGTGCCATATTTTTCTTCG-CTGGGACACCATCACCAGAGCATCG-CTGGAGAACC
256 GCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTC-GGAGAACC
* *
18193172 TGACCGGCGGCATTGGGGTTCCGACGATCAGGAGTTTCGGGGGGGTGTGCACACATGATGTGCGA
319 TGACCGACGGCATTGGGGTTCCG--G--CA--A---TCGGGGGGGTGTGCGCACATGATGTGCGA
**
18193237 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGTTCGAGAACTCACACC
375 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
18193302 CCCTTAAGGAGCATTTGAGATTTTACAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGG
440 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
18193367 GATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTATTTAGTTGAATGTTTTTGTGC
505 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
18193432 ATGCCAGA-AAAAATACAACGATCACATCTACCGAGTTTGGGGCCAAAACTCC-TTCTGAAAAAA
570 ATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAA
* * *
18193495 TTTTAAAAAATCCCGAACCGTAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTTC
633 TTTTAAAAAATACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
18193559 CCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
698 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
18193624 TGGCACACAGAAATATGAAGATGT-CTCTAAACCCACCTAACACCCTATCGATCCACGGCTTGCG
763 TGGCATGCAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * * *
18193688 CATCTTGTTTCTCTGGCCGG-CGTAGT----GCCCG-CC-CAC-CCTG-TCATTTGGTCGGTTGG
827 CATCCCGTCTCTCTGG-CGGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGG
18193744 CTTAG
891 CTTAG
* * * * *** * *
18193749 GCATACGGAGTTAATTCCCAGTATAAGATTAGACCAGACCGAGGGTTATGGCAGTAGGATTC-GC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGA-TCGGC
* * * * * * * * * *
18193813 AGCACGTAGATGAGGACCTGGCCGATCCTC-GACTTGCGCATCCCGCCCCTCTGGTCAGCTGAGC
65 AGCACGCAGAGGGGGACCCGGCTGATCCCCAG-GTTGCGCATCCCACCCCTCTGGCCGGCTGAGC
* * * * * *
18193877 GCCCGCAAGCTCATTTTGTGGGTTCACTTAGGCATACAGAGTTCATTCTCAGTCTAAG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
18193935 ATCGCACCGG
Statistics
Matches: 9796, Mismatches: 912, Indels: 431
0.88 0.08 0.04
Matches are distributed among these distances:
837 25 0.00
838 12 0.00
839 17 0.00
840 58 0.01
841 10 0.00
843 7 0.00
844 8 0.00
845 22 0.00
846 4 0.00
847 18 0.00
848 3 0.00
849 8 0.00
850 59 0.01
851 42 0.00
852 274 0.03
853 11 0.00
854 5 0.00
855 5 0.00
856 12 0.00
857 28 0.00
858 2 0.00
859 26 0.00
860 21 0.00
861 34 0.00
862 3 0.00
863 2 0.00
864 5 0.00
865 13 0.00
866 9 0.00
867 6 0.00
868 4 0.00
870 1 0.00
871 1 0.00
872 4 0.00
875 13 0.00
876 3 0.00
877 13 0.00
879 4 0.00
880 1 0.00
881 1 0.00
884 2 0.00
885 10 0.00
886 18 0.00
887 2 0.00
888 3 0.00
889 5 0.00
890 1 0.00
891 67 0.01
892 321 0.03
893 461 0.05
894 1417 0.14
895 1857 0.19
896 318 0.03
897 26 0.00
898 92 0.01
899 793 0.08
900 366 0.04
901 367 0.04
902 1158 0.12
903 172 0.02
904 269 0.03
905 90 0.01
906 108 0.01
907 458 0.05
908 54 0.01
909 8 0.00
910 5 0.00
911 4 0.00
912 5 0.00
914 12 0.00
915 59 0.01
918 2 0.00
919 8 0.00
920 8 0.00
921 375 0.04
922 81 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCA
GCACGCAGAGGGGGACCCGGCTGATCCCCAGGTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGGCAATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATACCGAAC
CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGG
ACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
Found at i:18186801 original size:26 final size:26
Alignment explanation
Indices: 18186765--18186817 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18186755 GATGACTTAG
18186765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18186791 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18186817 G
1 G
18186818 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18187696 original size:26 final size:26
Alignment explanation
Indices: 18187660--18187710 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18187650 TTTACTTAGG
*
18187660 CATATGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
18187686 CATACGGAGTTCCTTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
18187711 GATAGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:18188369 original size:12 final size:12
Alignment explanation
Indices: 18188352--18188376 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18188342 TGGACGTAGT
18188352 GCCCGCCCGCTC
1 GCCCGCCCGCTC
18188364 GCCCGCCCGCTC
1 GCCCGCCCGCTC
18188376 G
1 G
18188377 TTTCATCAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.64, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:18188583 original size:26 final size:26
Alignment explanation
Indices: 18188554--18188606 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18188544 GTTGGCTTAG
* *
18188554 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
18188580 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18188606 G
1 G
18188607 ATCAGAGTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:18189493 original size:26 final size:26
Alignment explanation
Indices: 18189457--18189507 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18189447 TTTACTTAGG
*
18189457 CATATGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
18189483 CATACGGAGTTCCTTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
18189508 GATAGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:18192150 original size:26 final size:26
Alignment explanation
Indices: 18192114--18192166 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18192104 GTTGACTTAG
18192114 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18192140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18192166 G
1 G
18192167 ATCGAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18193670 original size:899 final size:894
Alignment explanation
Indices: 18191406--18193934 Score: 3492
Period size: 899 Copynumber: 2.8 Consensus size: 894
18191396 TGGGTCGCTA
18191406 GGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTAT-
1 GGGGGGGTGTGC-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
18191468 CCCATCAAACCTCGAGAACTCACACCGCTTTAAGAGAGGC-TTTGCAGATTTTATAAGGTTTACT
65 CCCATCAAACCTCGAGAACTCACACCCCCTTAAG-GA-GCATTTG-AGATTTTATAA-GTTTGCT
18191532 GCCTAGTAGCCATTAAAAAAGTGTCCTGAAATGGGGACACTTTTTTCGAAATTGGTCACAAAATC
126 GCC-AGTAGCCATT---AAAGTGT-CTGAAATGGGGACACTTTTTTC-AAA-TGGTCACAAAATC
*
18191597 TTGTAGCACGTTCGAGTTATTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
184 TTGTA-CAC-TTCGAG-TATTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
18191662 GTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
246 ATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
18191727 TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAATGCTTAAT
311 -TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
18191792 GGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACACAAAAATGTGAAGATGTGCC
375 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT-CC
*
18191857 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-
439 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
*
18191921 -C-CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGAT
504 CCGCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
18191984 CGGACCGGACCGAGGGTTGC-AGCAGCAGGATCGGCATCACGTAGAGGGGGACGCGACCGATCCC
569 CAGACCGGACCGAGGGTTACGA-CAGTAGGAT-TGCAGCACGTAGAGGGGGACCCGGCCGATCCC
* * * *
18192048 CGACTTGCGCATGCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
632 TGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTA
*
18192113 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGA
697 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGA
* * * * *
18192178 CCGATGCTTGCGACAGCACATGCTGGGCTTGAGCATGTACTGGTGCCGCATTTTTCTTCGCCGGG
762 CCGAGGCTTGCGACAGCACATACTGGGCTCGAGCATGTACTAGTGCCACATTTTTCTTCGCCGGG
* ** * * * *
18192243 GCACCATCGTCGGAGCATCGTAGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
827 ACACCATCACCAGAGCATCGTAGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGAGG
18192308 GCC
892 GCC
* *
18192311 GGGGGGTGTGTG-CACATGATGTGCGATGGGTGCAGGTACTTGGCCCTTATATTAGCCCCCTATC
1 GGGGGG-GTGTGCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
18192375 CCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
65 CC-CATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTATAAGTTTGCTGCC
*
18192440 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTT
129 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
18192505 CGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAATAATATAAGGATCACATCTAACAAGTTT
194 CGAGTATTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
* * * * * *
18192570 GGGGCCAAAACTCCCTCCGAAAAAATTTTAAAAAGTCTCGAACCGCAAAAAGTTTCAAAAATCGT
259 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-GAAAATCAT
*
18192635 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *** * ** * *
18192700 AATTTACAAGCCACAAAAATGATGTTGGTATGCAGAAATATGAAGATGTCCCTAAAGCCACTTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT-CCTAAACCCACCTAC
* * *
18192765 CACCCTATCGATCAACGGCTTGAGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCTGCCCGCC
452 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCCCGCC
* * * * *
18192830 CGCTCGTTTCGTCCGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCG
516 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * *
18192895 AAGGTTCCGATAGTAGGATTGACAGCACATAGAGGGGGACCCGGCCGATCCCTGAGTTGCGCATC
581 AGGGTTACGACAGTAGGATTG-CAGCACGTAGAGGGGGACCCGGCCGATCCCTGACTTGCGCATC
*
18192960 CCGCCCCTCTGGCCGGCTGAGCGCTCC-CACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGT
645 CCGCCCCTCTGGCCGGCTGAGCGC-CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * *
18193024 TCATTCCCAGTCTAAGTATAGGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGC-
709 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGCTTGCG
* * * * *
18193088 AGCAGCACATATTGGGCTCGGGCATGTGCTAGTGCCATATTTTTCTTCGCTGGGACACCATCACC
774 A-CAGCACATACTGGGCTCGAGCATGTACTAGTGCCACATTTTTCTTCGCCGGGACACCATCACC
* ***
18193153 AGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGAGTTTC
838 AGAGCATCG-TAGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGAGGGCC
18193210 GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 GGGGGGGTGTGC-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
** * *
18193275 CCTCATCAAAGTTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAAGTTTGCTGTC
65 CC-CATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTATAAGTTTGCTGCC
*
18193340 AGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
129 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
18193405 CGAGTATTTAGTTGAATGTTTTTGTGCATGCCAGA-AAAAATACAACGATCACATCTACCGAGTT
194 CGAGTATTTAGTTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACATCTACCAAGTT
*
18193469 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGAAAATCAT
258 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGAAAATCAT
* *
18193534 GAAAAATAGAAAACGAGTCGTCTTCCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
18193599 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTCTCTAAACCCACCTAA
388 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTC-CTAAACCCACCTAC
** * * *
18193664 CACCCTATCGATCCACGGCTTGCGCATCTTGTTTCTCTGGCCGGCGTAGTGCCCGCC-CAC-CCT
452 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCC
* * * * *
18193727 G-TCATTTGGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTATAAGATTAGACCAGACCGA
517 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * *
18193791 GGGTTATGGCAGTAGGATTCGCAGCACGTAGATGAGGACCTGGCCGAT-CCTCGACTTGCGCATC
582 GGGTTACGACAGTAGGATT-GCAGCACGTAGAGGGGGACCCGGCCGATCCCT-GACTTGCGCATC
* * * * * *
18193855 CCGCCCCTCTGGTCAGCTGAGCGCCCGCA-AGCTCATTTTGTGGGTTCACTTAGGCATACAGAGT
645 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACA-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
18193919 TCATTCTCAGTCTAAG
709 TCATTCCCAGTCTAAG
18193935 ATCGCACCGG
Statistics
Matches: 1435, Mismatches: 165, Indels: 58
0.87 0.10 0.03
Matches are distributed among these distances:
894 9 0.01
895 437 0.30
896 10 0.01
897 5 0.00
898 28 0.02
899 509 0.35
900 303 0.21
901 8 0.01
904 10 0.01
905 56 0.04
906 20 0.01
907 11 0.01
908 29 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GGGGGGGTGTGCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTATAAGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTATTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTC
ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
TACGACAGTAGGATTGCAGCACGTAGAGGGGGACCCGGCCGATCCCTGACTTGCGCATCCCGCCC
CTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGCTTGCGACAGCAC
ATACTGGGCTCGAGCATGTACTAGTGCCACATTTTTCTTCGCCGGGACACCATCACCAGAGCATC
GTAGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGAGGGCC
Found at i:18195223 original size:26 final size:26
Alignment explanation
Indices: 18195187--18195238 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18195177 TTGACTTTGT
18195187 CATACGGAGTTCATTCCAAGTCTAAG
1 CATACGGAGTTCATTCCAAGTCTAAG
*
18195213 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCAAGTCTAAG
18195239 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCAAGTCTAAG
Found at i:18196824 original size:25 final size:25
Alignment explanation
Indices: 18196790--18196840 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
18196780 TTGACATTAG
18196790 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
* *
18196815 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
18196840 G
1 G
18196841 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:18197720 original size:26 final size:26
Alignment explanation
Indices: 18197691--18197743 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18197681 CTTGACTTAG
*
18197691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
18197717 GCATATAGAGTTCATTCCGAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18197743 G
1 G
18197744 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18198041 original size:882 final size:873
Alignment explanation
Indices: 18196062--18199230 Score: 4050
Period size: 882 Copynumber: 3.6 Consensus size: 873
18196052 ACCTGACTGG
* * *
18196062 CGGCATTGGGGTTCTGACGATC-AGGGGTCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGC
1 CGGCATTGGGGTTCCGACGATCGAGGGGTCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
18196126 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
66 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
18196191 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-T
131 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
18196255 TTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTTGCTGAA-TTTTTTGTGCAAGCGAA
196 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
18196318 AAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAA
261 AAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
** * *
18196382 ATCTTGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAG-AAATGAGTCGTCTTGCCATGAAAC
326 ATCCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * **
18196446 TTCTCGTGAAGGCTTAAGGGACCGTTGTATGAGTTTAAAAGCCATAAAAATGGAATTGGCATGCA
391 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGAATTGGCACACA
* * *
18196511 GAAATATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCATGGCTTGCACATCCTGTCT
456 AAAATATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCT
* * * * * *
18196576 CTCTGGCCGACATAGTGCTTGCCAGCCCGCCCGCTCTCTCGTTTCATCGGTTGGC-TTAGCCTAC
521 CTCTGGCCGGCGTAGTGCCTGCCAGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTTGGCCTAC
* * * * * **
18196640 GGAGTTCATTACTAGTCTAAGATCGAATCAGACCGCA-GG-TACGATAAGTAGGAT--GCAGCAC
586 AGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CG-AGGGTTGCG-GCAGTAGGATCGGCAGCAC
* * * * * * *
18196701 AACAGA-AGGGACCCGGCCGATGCCCGCTTTGCG--TCCTGCGCCTTTGGTCGGCTGAGCGTGGT
648 -ACAGAGGGGGACCCGACCAATCCCCGC-TTGCGCATCCTGCCCCTCTGGTC-GCT-AGCG-CGT
* *
18196763 CACGCTCGTTTCGTGGCTTGACATTAGGCATACGGAGTTCA-TCCCAGTCTAAGCATATGGAGTT
708 -ACGCTCATTTCGTGGCTTGAC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTT
** * *
18196827 CATTCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAGCACATGCTAGACTCGGCATGTGCT
771 CATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCT
18196892 GGTG-CACATTTTTCTTCGTCGGGGCACCATCATCAGAGCATCGTCGGAGAACCTGACCGA
836 GGTGCCACATTTTTCTTCGTCGGGG------CA-C----CAT--T----G--CC-G---GA
* *
18196952 CGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
1 CGGCATTGGGGTTCCGACGATCGAGGGGTCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
18197017 TGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCTTAA
66 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
18197082 ACAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
131 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
18197147 TTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTTGTGCAAGCCA
196 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAAGCCA
** *
18197212 GCAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
260 AAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
*
18197277 AATCTCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
325 AATCCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
18197342 CTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGACATAAAAATGGAATTGGCACAC
390 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGAATTGGCACAC
* * * * *
18197407 AAAAATATGAAGATGTGCCTAAACCAACCTACCAACATATCGATCCGCGGCTTGCGCATCCCGTC
455 AAAAATATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
* *
18197472 TCTCTAGCTGGCGTAGTGCCTGCCAGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTTGGCCTA
520 TCTCTGGCCGGCGTAGTGCCTGCCAGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTTGGCCTA
* * *
18197537 CAGAGTTCATTCCCAATCTAAGATTGGATCAGATCGAGGGTTGCGGCAGTAGGATCGGTAGCACA
585 CAGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CGAGGGTTGCGGCAGTAGGATCGGCAGCACA
* *
18197602 CAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATTCTACCCCTCTGGTCAGCTAAGCGCACGTA
649 CAGAGGGGGACCCGACCAATCCCC-GCTTGCGCATCCTGCCCCTCTGGTC-GCT-AGCG--CGTA
18197667 CGCTCATTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCAT
709 CGCTCATTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCAT
* * * *
18197732 TCCGAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCAAGTCCTG
774 TCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTG
**
18197797 GTGCCACATTTTTCTTCACCGGGGCA-CATTGCCGGA
837 GTGCCACATTTTTCTTCGTCGGGGCACCATTGCCGGA
*
18197833 CGGCATTGGGGTTCCGACGATCGGAGGGGT-C-GGGAAGGGTGTGCGCACATGATGTGTGATGGG
1 CGGCATTGGGGTTCCGACGATC-GAGGGGTCCAGGG--GGGTGTGCGCACATGATGTGCGATGGG
18197896 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
63 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
18197961 TGAAGAGCATTTGAAATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACA
128 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * **
18198026 CTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCCGAATTTTTTTGTGCGTGC
193 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGC
* * * *
18198091 CAAAAAAAAATACAAGGATCACGTCTACC-TAGTTTGGGACCAAAACTTCTTCCGAAAAAATTTA
258 C-AAAAAAAATACAAGGATCACGTCTACCAT-GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
** * ** * *
18198155 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGAAAAAAATAGAAAACGAGTAGCCTTGCCAT
321 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* ** * *
18198220 GAAACTTAACGTGAACACTTAAGGGACCATTGTATGAATATAAAAGCCATAAAAATGGCATTGGC
386 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGAATTGGC
* * * *
18198285 ACATAGAAATATGAAGACGTACCTAAAGCC-ACCTACCACCCTATCGATCCACGGCTTGCGCATC
451 ACACAAAAATATGAAGATGTACCTAAA-CCAACCTACCACCCTATCGATCCACGGCTTGCACATC
* * * ** *
18198349 CCGTTTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-CTGCTCGTTTCGTCGGTTCACTTA
515 CCGTCTCTCTGGCCGGCGTAGTGCCTGCCAGCCCGCCCGCTC-GCTCGTTTCGTCGGTTGGCTTT
* * * * * * *
18198413 GGCATATAGAGTCCATTCCCAGTCCAAGATCAGATCAGACTGAGGGTTGTGGCAGCAGGATCGGC
579 GGCCTACAGAGTTCATTCCCAGTCTAAGATCGGATCAGAC-GAGGGTTGCGGCAGTAGGATCGGC
* *
18198478 AGCACGCAGAGGGGGACCCGATCAATCCCCAGCTTGCGCATCCTGCCCCTCTGG-C-C---CGC-
643 AGCACACAGAGGGGGACCCGACCAATCCCC-GCTTGCGCATCCTGCCCCTCTGGTCGCTAGCGCG
* * * * *
18198537 -ACGCTCTTTTCGTGGGTTGACTTAGCCATACGGAGTTAATTCCCAGTCTAAGCATAGA-AGTTC
707 TACGCTCATTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTC
* * *
18198600 ATTCCCAGTCTAACATCAGACCAGACCGAGGGTTGCAGCA-CGACATGCTGGGCTCGGGCATGTG
772 ATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC-ACATGCTGGGCTC-GGCATGTG
** * *
18198664 CTGGT-CTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGA
834 CTGGTGC-CACATTTTTCTTCGTCGGGGCACCATTGCCGGA
* * * * * * *
18198704 CGGCATTGGGGTACCGACGATCG-GGGTTGCTGGGGGGATGTGCGCAGATGATGTGTGATGGGCG
1 CGGCATTGGGGTTCCGACGATCGAGGGGTCCAGGGGGG-TGTGCGCACATGATGTGCGATGGGTG
* * *
18198768 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGCACTCACACCACCGTA
65 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
18198833 AGGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATAAAAGTGTTTGAAATGGGGATACT
130 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
18198898 TTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
195 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCA
* ** * * ***
18198963 ACAAAAATACAAGGATCACGTCTACCAACTTTAGGGCCAAAACACCTTTTGAAAAAATTTTAAAA
260 AAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* *
18199028 AATCCCGAACCGTAAAAAGTTTCCATAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
325 AATCCCGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * **
18199092 ACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATG
389 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGAATTGGCACA
*
18199157 CAAAAATATGAAGATG-AGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
454 CAAAAATATGAAGATGTA-CCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
* *
18199221 GCCCTCTGGC
518 TCTCTCTGGC
18199231 GGCTGAGCGC
Statistics
Matches: 2022, Mismatches: 216, Indels: 103
0.86 0.09 0.04
Matches are distributed among these distances:
868 3 0.00
869 237 0.12
870 284 0.14
871 88 0.04
873 1 0.00
875 2 0.00
879 1 0.00
880 3 0.00
881 43 0.02
882 576 0.28
883 2 0.00
884 1 0.00
885 2 0.00
887 1 0.00
890 21 0.01
891 162 0.08
892 34 0.02
893 14 0.01
895 73 0.04
896 42 0.02
897 188 0.09
898 46 0.02
899 10 0.00
900 26 0.01
901 20 0.01
902 67 0.03
903 46 0.02
904 11 0.01
905 18 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (873 bp):
CGGCATTGGGGTTCCGACGATCGAGGGGTCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
AAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
ATCCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGAATTGGCACACA
AAAATATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCT
CTCTGGCCGGCGTAGTGCCTGCCAGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTTGGCCTAC
AGAGTTCATTCCCAGTCTAAGATCGGATCAGACGAGGGTTGCGGCAGTAGGATCGGCAGCACACA
GAGGGGGACCCGACCAATCCCCGCTTGCGCATCCTGCCCCTCTGGTCGCTAGCGCGTACGCTCAT
TTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCAGTC
TAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCACAT
TTTTCTTCGTCGGGGCACCATTGCCGGA
Found at i:18199340 original size:25 final size:26
Alignment explanation
Indices: 18199270--18199345 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
18199260 GTTGACTTAG
*
18199270 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
18199296 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18199322 GCATA-GGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
18199346 CGATCGAACC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
25 17 0.38
26 28 0.62
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18200259 original size:27 final size:27
Alignment explanation
Indices: 18200195--18200272 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
18200185 GTTGACTTAG
* *
18200195 GCATACAGAGTTCATTCGCAGTCT-AA
1 GCATACGGAGTTCATTCCCAGTCTAAA
*
18200221 GCATACGAAGTTCATTCCCAGTCTAAA
1 GCATACGGAGTTCATTCCCAGTCTAAA
*
18200248 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAGTCTA
18200273 CGATCAGACC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 21 0.46
27 25 0.54
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCAGTCTAAA
Found at i:18203821 original size:437 final size:438
Alignment explanation
Indices: 18202948--18203823 Score: 1459
Period size: 437 Copynumber: 2.0 Consensus size: 438
18202938 TTATATTGGC
* *
18202948 CCCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCCTTAAAGAGCATTTGAAATTTTACAGGT
1 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAAGT
18203013 TTGCTGCCAGTCGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTT
66 TTGCTGCCAGTCGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTT
* * *
18203078 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
131 ATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTA
* *
18203143 CCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCA
196 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCA
* * * *
18203208 AAAATCGTGAAAAATAGAAAGCGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
261 AAAATCGTAAAAAATAAAAAACGGGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACC
** *
18203273 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGCAGAAATATGAAGATGTGTCTAAAC
326 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
*
18203338 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTCTCTGG
391 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGCCTCTCTGG
*
18203386 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
1 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAAGT
* *
18203451 TTGCTGCCAG-CAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCT
66 TTGCTGCCAGTC-GCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCT
18203515 TATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCT
130 TATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCT
** *
18203580 ACCAAG-TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTTCGAACCGCAAAAAGTTTC
195 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTC
* * *
18203644 AAAAATCGTAAAAAATAAAAAATGTGTCGTCTTGCCATGAAACTTGACGTAAAGGCTTAAGGGAC
260 AAAAATCGTAAAAAATAAAAAACGGGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGAC
* *
18203709 CATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
325 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * * *
18203774 TCCACCTACCACCCTTTCGATCCACGGCTTGGGCATCCCGCCTCTCTGG
390 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGCCTCTCTGG
18203823 C
1 C
18203824 ATGCGTAGTG
Statistics
Matches: 407, Mismatches: 30, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
437 217 0.53
438 190 0.47
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (438 bp):
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAAGT
TTGCTGCCAGTCGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTT
ATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCA
AAAATCGTAAAAAATAAAAAACGGGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGCCTCTCTGG
Found at i:18205512 original size:26 final size:26
Alignment explanation
Indices: 18205476--18205528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18205466 GTTTACTTAG
* *
18205476 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
18205502 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
18205528 G
1 G
18205529 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:18206411 original size:26 final size:26
Alignment explanation
Indices: 18206375--18206427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18206365 GTTGACTTAG
18206375 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
18206401 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18206427 G
1 G
18206428 ATTGGATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18206807 original size:899 final size:897
Alignment explanation
Indices: 18204983--18214705 Score: 11212
Period size: 899 Copynumber: 10.9 Consensus size: 897
18204973 CTAGTGTCGT
* * * **
18204983 ATTTGTTTGTGCATGCCAAGAAAAATACAAGTATCACATCTACCAAGTTCAGGGCCAAAACTCCT
1 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
* *
18205048 TCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACG
66 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
18205113 AGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
131 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
18205178 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCA
196 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * *
18205243 TGGTTTGCGCATCTCGCCTCTCTGGCAGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTGGTCGG
261 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
** * * *
18205308 TTGGCTTAGGCATAAAGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCA
** * * * * **
18205373 GGATCGATAGCACGTAGAGAGGGACCCGA-TCGATCCTCGGCTTGTGCATCCCACCCCTCTGGCC
391 GGATCGGCAGCACGCAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * *
18205437 GGTTGTGCGCCCGCACGCTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAA
455 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
18205502 GCATACAGAGTTCATTCCCAATCTAAGATCGAACTGGACCAAGGGTTGCGACAGCACATGCTAGG
520 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-T-GACCGAGGGTTGCGACAGCACATGCTGGG
* * *
18205567 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTTGTCGGGGCACCATAGTCGGAGCATCGTCGGAGA
583 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
18205632 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCC-GAGGGGGTGTGCGCACATGATGTG
648 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAG-GGGGGTGTGCGCACATGATGTG
*
18205696 CGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
712 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
18205761 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
777 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
18205826 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTACGAATTTTTAGCTGA
842 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
18205882 ATTTTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAACTCCT
1 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
* * * *
18205947 TCCAAAAAAATTTTAAAAAATCTCGAACGGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
66 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
18206012 AGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
131 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
18206077 AAAATGGCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCA
196 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
18206142 CGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGTCCGCCCACTCTTTTCATCGG
261 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * ** * *
18206207 TTGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCAAAAGTTGCGGTAGA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGGTAGC
* *
18206271 ATGATCGGCAGCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
390 AGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * *
18206336 GGCTGAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
455 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
18206401 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGAACCGAGGGTTGTGACAGCACAGGATGGG
520 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TG-ACCGAGGGTTGCGACAGCACATGCTGGG
* * *
18206466 CTCGGGCATGTGCTGGTACCACATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCATCGGAGA
583 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
18206531 ACCTGACCGGCGGCATTGAGGTTCCGACGATCGAGGGGGCCAGTGTGGGTGTGCGCACATGATGT
648 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCAG-GGGGGTGTGCGCACATGATGT
* *
18206596 GCGATGGGT-ATGTGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTC
711 GCGATGGGTGCTG-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
18206660 ACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
775 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
18206725 ATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGA
840 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
18206782 CTTTTTTT-TGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
1 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
* * *
18206846 TCCGAAAAAATTTTAAAAATTCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATG
66 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
18206911 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATA
131 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * **
18206976 AAAATGGCATTAGCACGTAGAAATATGATGATGTGCCTAAACCCACCTAGTACCCTATCGATCCA
196 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * * * *
18207041 TGACTTACGCATCCCGTCTCTCTGTCTGGCGTAGTACCCTCCCGCCCACCCGCCTACTCATTTCG
261 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG----CTCGTTTCG
* ** ** * * *
18207106 TCGATTGGCTTATCCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAATCGAGGGTTGCGGT
322 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGT
* * * * * *
18207171 AGCAAGATCAGCAGCAGGCAGAGGGGGACCCGA-TCGATCCCTGGCTTGCGCATCCCGGCCCTCT
387 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCTGCCCCTCT
* * * *
18207235 GGCCGGCTGAGCACCCGTACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-
451 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
*
18207299 -T---C-TA---AG---ATT----G-----GA-CGG--GACCGAGGGTTACGACAGCACATGCTG
516 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGACCGAGGGTTGCGACAGCACATGCTG
**
18207341 GGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG---CA----C----CATCGTCGGA
581 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
** * *
18207395 GAACCTGACCAACGGTATTAGGGTTCCGACGATCGGGTGGGCC-GGGGGGTGTGCGCACATGATG
646 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCAGGGGGGTGTGCGCACATGATG
** * * *
18207459 TGCGATAAGTGCTGGTACTTGGCCCTTATCTTGGCCCCCTATCCCTCATCAAACTTTGAGAACTC
710 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
18207524 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
775 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
18207589 ATGGGG-TACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGA
840 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
18207646 CTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
1 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
* * * ** *
18207711 TTCGAAAAAATTTTAAAAAATCCCGAACCGCAATAAGTTTCGTAAATCGTGAAAAATAAAAAACG
66 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
18207776 AGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAT-
131 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * **
18207840 AAAATGGCATTGGCATGAAAAAATATGACGATGTGCCTAAACCCACCTATTACCCTATCGATCCA
196 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
18207905 CGACTTGCGCATCCCGTGTCTCTGGCTC-GCGTAGTGCCCAACCGCCCGCCCGCCCGCTCGTTTC
261 CGGCTTGCGCATCCCGTCTCTCTGGC-CGGCGTAGTG--C--CCGCCCGCCCGCCCGCTCGTTTC
** * * **
18207969 GTCGACTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAAGTGAGGGTTACGG
321 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGG
* * * * * ** * * * * *
18208034 CAGCAAGATCGGTAGCAGGCAGAGGAGGACTTGACTGATCCCTGGCTTGTGTATCCCGCCCCTAT
386 TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCT
* * * *
18208099 GGCCGACTGAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATAAGGAGTTCATTCCCAGT
451 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
18208164 CTAAGCATACGGAGTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTTGCGGCAGCACATGT
516 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA--TGACCGAGGGTTGCGACAGCACATGC
* * * **
18208229 TGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTTGGGGCACGATCGTCGGAGCATCACCG
579 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCG
* * * * * *
18208294 GAGAACCTGACCGACGACATTAGGGTTTCGATGATCGGGGGGGCC-GAGGCGGTGTGCGCACATG
644 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAG-GGGGGTGTGCGCACATG
**
18208358 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTACCCCCTATCCCTCATCAAACCTCGAGAA
707 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
18208423 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
772 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
18208487 GAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
837 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
18208548 ATTTTGTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAATTTTGGGGCCAAAACTCC
1 ATTTT-TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC
** *
18208613 TTCCGAAAAAA-TTTAAAAAGATCCAAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATACAAAA
65 TTCCGAAAAAATTTTAAAAA-ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* *
18208677 CGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCA
129 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
18208742 TAAAAATGGCATTGGCACATAGAAAAATAAAGATGTACCTAAACCCACCTACCACCCTATCGATC
194 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
18208807 CACGGCTTGCACTTCCCG--TCTCTGGCCGACGTAGTGCCCACCCACCCGCCCGTCTGCTCGTTT
259 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC--C-GCTCGTTT
* ** *
18208870 CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAGTGAGGGTTGCG
320 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACG
* * * * *
18208935 GTAGCAGGATTGACAGCACGCAGAGGGGGACCCGA-TCGATCCTCGACTTGCGCATCCCGCCCCT
385 GTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCTGCCCCT
** *
18208999 CTGGCCAACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCA
449 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
18209064 GTCTAAG-AT-C-G-G---------A-TC--AGA-C---T----GAGGGTTGCGGCAGCACATGC
514 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGACCGAGGGTTGCGACAGCACATGC
* ** * * * *
18209105 TGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGTACCATTGCCAGAGCATCG-CT
579 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-
* * * *
18209169 GGAGAACCTGACCGACGACATTGGGGTTCCGATGATCGGGGGGCC-GGGGGGTGTGTGCACATGA
643 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGA
* *
18209233 TGTGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
708 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
18209298 TCACACCACCTGAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCG
773 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
18209363 AAATTGGGACACTTTTTCCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
838 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* ** * ** *
18209423 ATTTTTTTTTGTGTGCCAAAAAAAATACAAGGATCACATCTAGAAAGTTTGGGGCCAAAATTCCT
1 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
* * * **
18209488 TCTGAAAAAATTTTAAAAAATTCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
66 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
18209553 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATA
131 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* **
18209618 AAAATGGCATTGGCACGTAGAAATATGAAGCTGTGTGTAAACCCACCTACCACCCTATCGATCCA
196 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
18209683 CGGCTTGCGCATCCCATCTCTCT-GCCTGGCGTAGTACCCGCCCGTGTGTCCGCTCGCTCGTTTC
261 CGGCTTGCGCATCCCGTCTCTCTGGCC-GGCGTAGTGCCCGCCC----GCCCGCCCGCTCGTTTC
* * * * *
18209747 GTTGGATGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGGCCGAGGGTTACGG
321 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGG
* * * ** ** * *
18209812 TAGCACGCAGAGGCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAAACCGAT-CCCAGCTT
386 TAGCA-G--GA-TCGG--CAG--C-A----CGCAG-AGGGGGA-C--CCGACTGATCCCCGGCTT
* * **
18209876 GCACATCCTGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATA
434 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
18209941 CGGAGTTCATTCCCAGTCT----AT-----G---------A-T-T-AGA-CCG--GACCGAGGGT
499 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGACCGAGGGT
* **
18209982 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCGGGGCACCATC
564 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
* * * * *
18210047 GCCAGAGCATCGTCGGATAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCC-GGGG
629 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCAGGGG
* * * *
18210111 GGTGTGTGCACATGATGGGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACA
693 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
18210176 TCAAACATCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
758 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
18210241 CCATTAAAGTGTCTTAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
823 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
18210306 TTTTAGCTGA
888 TTTTAGCTGA
* * * * * *
18210316 ATTTTTTTGGGCATGCCAGCAAAAATAAAAGGATCACCTCTACCAAGTGTGGGACCAAAACTCCT
1 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
* ** * *
18210381 TCC-AAAAAAGTTTTAAAAGATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAAAAGAAAAC
66 TCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
18210445 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCAT
130 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
18210510 AAAAATGGCATTGCCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
195 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
18210575 ACGGCTTGCGCATTTCCGTCTCTCTGGCCGGCGTAGTACCCACCCGCGCGTCCTCTCGCTCATTT
260 ACGGCTTGCGCA-TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-C-CGCTCGTTT
* * * *
18210640 CGTCGGATGGCTTAGGCATA-GGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACG
320 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACG
** * ** * * * * *
18210704 ACAGCACGCAAAGG-GGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGATCAATCCCAGGC
385 GTAGCA-GGATCGGCAGCA-C-G-CAGA-GG--G-GG-A-C----CCGACTGATC---CCC-GGC
* * * *
18210768 TTGCACAT-CTCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGAGTTGACTTAGGC
432 TTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
*
18210832 ATACGAAGTTCATTCCCAGTCT----AT-----G---A-T--C-G-----GATC-G--GACCGAG
496 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGACCGAG
** * * * * ** *
18210873 GGTTGCGGTAACACATGTTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTCACCGGGGCACT
561 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACC
** * * * * * * *
18210938 ATCACCAGAGCATCGCCGGAGAACCTGATCGACGTCATTGGGGTTCCGGCGATCGGGGCGGCCGG
626 ATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCC-A
*
18211003 GGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
689 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
18211068 CACATCAAACATCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCA
754 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
18211133 GTAGCCATTAAAGTGTCTTAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTC
819 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
18211198 GAGTTTTTAGCCGA
884 GAGTTTTTAGCTGA
* * * * * *
18211212 ATTGTTTTGGGCATGCCAGCAAAAATAAAAGGATCACATCTACCACGTTTGGGACCAAAACTCCT
1 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
* *
18211277 TCCAAAAAAATTTTAAAAGATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACG
66 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
18211341 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
131 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
18211406 AAAATGGCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
196 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * * ** * *
18211471 CGACTTGTACATCCCGTCTCTCTAGCCGGCGTAGCGCCCGCCCGTTCGCCCGCACGTTTCGTCGA
261 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
*** * *
18211536 TTGGCTTAGGCATGTAGAGTTCATTCCCAG-CTAAGATCAGACTGGATCGA-----A-GGT----
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCA
* * * * * * *
18211590 TG-T-GGCAGGACGCAGAGGGGGATCC-AGCCGATCTCCGGGTTGCACATCCTGCCCCTAC-GGC
391 GGATCGGCAGCACGCAGAGGGGGACCCGA-CTGATCCCCGGCTTGCGCATCCTGCCCCT-CTGGC
* * * * * * *
18211651 CAGCTGAGCACCCGCACGATCATTTTGTGGGTTGACTTAGGCATGCGGATTTCATTCCCAGTCT-
454 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
18211715 ---AT-----G---------A-TC--AGACCGGAT---CGAGGGTTGCGGCAGCACATGCTGGGC
519 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * * ** *
18211757 TCGGGCATGTGCTGGTGCCACATTTTTTTTC-ACTGGGGCACCATCGCCAGAGCATCACCGCAGA
584 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
18211821 ACTTGATCAGCGGCATTGGGGTTCCGACGATCGGAGGGGCC-GGGGGGTGTGCGCACATGATGTG
648 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCAGGGGGGTGTGCGCACATGATGTG
* * * * *
18211885 TGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACATCGAGAACTCCC
712 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
18211950 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
777 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
18212015 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
842 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* ** * *
18212071 ATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCATGTCTACTAAGTTTGGGGCCAAAACTCTT
1 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * *
18212136 TTCGAAAAAATTTTCAAAAATCACGAACCGTAAAAAGTTTC-GAAATCATGAAAAATAGATAACG
66 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * *
18212200 AGTCGTGTTGCCATTAAACTTTACGTGAAGGCTTAAGGGATCCATTGTATGAATTTACAAGCCAT
131 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA-CCATTGTATGAATTTACAAGCCAT
* * *
18212265 AAAAATGGCATTGGCACGCAGAAATAATGAAAGATGTGCCTAAATCCCACCTAGCAACCATAATC
195 AAAAATGGCATTGGCACGTAGAAAT-ATG-AAGATGTGCCTAAA-CCCACCTA-CCACCCT-ATC
* * * * *
18212330 GATCCACGGCTTGCCAACATTCCGTCTCCTCAGGCCGACGTACGTGCCCGCCTGCCCGCCAGCGC
255 GATCCACGGCTTG-C-GCATCCCGTCT-CTCTGGCCGGCGTA-GTGCCCGCCCGCCCGCC--CG-
* * * * * **
18212395 CCCATTTCATCGGTTTGGGCTTAGAACATATCGGAGTTCATTCCTAAGTCTAAAGATTGGACCGG
313 CTCGTTTCGTCGG-TT-GGCTTAG-GCATA-CGGAGTTCATTCC-CAGTCT-AAGATCAGACCGG
* * ** * *
18212460 ACCGAGGGTTAAGGCAGCAGGATCGATAGGC-CGCAGAGGGGGACCCGAAC-GGTCCTCGGTCTT
372 ACCGAGGGTTACGGTAGCAGGATCGGCA-GCACGCAGAGGGGGACCCG-ACTGATCCCCGG-CTT
* * * * *
18212523 GTGCATACTGCCCCTCTGGCTGGCAGAAGCGCCCGCACGCTCGTTTCCGTGGGTTAACTTAGGAC
434 GCGCATCCTGCCCCTCTGGCCGGCTG-AGCGCCCGCACGCTCGTTT-CGTGGGTTGACTTAGG-C
* * * * * **
18212588 ATACAGAGTTCATT-CCAGTCTAAG-AAAAGGAGGTTCATTCCCAGATATAAAGATCAGACCAAA
496 ATACGGAGTTCATTCCCAGTCTAAGCATACGGA-GTTCATTCCCAG-TCT-AAGATCGGA--TGA
* * * * * * *
18212651 CAGAGGGTTGTGGTA-AGCA-AAGCTTGGGCTCGGGCATGTGCTGGTACCCGCATTTTTCTGCAT
556 CCGAGGGTTG-CG-ACAGCACATGC-TGGGCTCGGGCATGTGCTGGT-GCCACATTTTTCTTCGT
* * * *
18212714 C-GGGCACCATCGTCGGAGCATCG-CCGAGAACCTGACCGGCGGCATTAGGGTTTCGGCGATCGG
617 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
*
18212777 GGGGCCAGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
682 GGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * * *
18212842 CTTATCCCTCCTCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTT
747 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
18212907 GCAGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAAATGGTCACAAAATCTTG
812 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTG
* *
18212972 TACATTTTGAGTTTTTAGCTGA
876 TACACTTCGAGTTTTTAGCTGA
* * ** * *
18212994 ATTTTTTTCTACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGCGGCTAAAACTCCT
1 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
* * ** * *
18213059 TCTGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATAAAAAATAGAAAACG
66 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
18213124 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
131 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
18213189 AAAATGGCATTGGCACGCAAAAATATTAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCA
196 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
18213254 CTGCTTGCGCATCCCATCTCTTTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTTGTTTCATCGG
261 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * ** *
18213319 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGTTCAGACCAGATCGAGGGTTGTGGCAGCA
326 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCA
* ** * * * *
18213384 GGATCGGTAGCACATAGAGGGGGACCCGACCGATCCCCGACCTGCGCATCCTGCACCTCTGGCCG
391 GGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * *
18213449 GCTGAGTGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCCTACGGAGTTCATTCCCAGTCTAAG
456 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
18213514 CTTACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCGACAGCACATGCTGGGC
521 CATACGGAGTTCATTCCCAGTCTAAGATCGGA--TGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * * *
18213579 TCGGGCATGTGTTGGTG-CAGCATTTTTCTTCGCCGGGGCACCATCGTCGAAGCATTGCCGGAGA
584 TCGGGCATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
18213643 ACCTGACCGGCGGCATTGTGGTTCCGACGATTGGGGGGGCCA-GGGGGTGTGCGCACATGATGTG
648 ACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* ** * * *
18213707 CGATGGGGGCTGGTACTTGGCCCTTATATTGGTGCCCTGTCCCTCAACAAACCTTGAGAACTCAC
712 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
18213772 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGCAACCATTAAAGTGTTTAAAAT
777 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
18213837 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTAACGCTGA
842 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTT-A-GCTGA
** * * *
18213896 ATTGGATTGGTATGCATTTCCAAAAAAAAATACAAGGGATCACATCTATCCAAGTTTGGGGCCAA
1 ATT---TTTTTGTGCA-TGCC-AACAAAAATACAA-GGATCACATCTA-CCAAGTTTGGGGCCAA
* * *
18213961 AACTTCCTTCCGAAAAAAATTTTCAAAAATCTCGAACGCGTAAAACGTTTCAAAAAATCGTGAAA
59 AAC-TCCTTCCG-AAAAAATTTTAAAAAATCCCGAAC-CGTAAAAAGTTTC-AAAAATCGTGAAA
* * *
18214026 AATAG-AAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAGGGGACCATTGTATGAATT
120 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
18214090 TACAAGCCATAGAAATGGCATTGGCATGTAGAAATACGAAGATGTGCCAAAACCCACCTACCACC
185 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * ** *
18214155 CCATCGATCCACGGCTTGCGCATCCTGTCTCTCTGATCGGGGTAGT----GCCCGCCCGCCCGCT
250 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT
* * * * *
18214216 CGTTTTGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGTTCAGACCAGATCGAGGG
315 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* * * * * * *
18214281 TTACGATAGCAGGATCGACAGTACGCAGAGAGGGACTCGACCGATCCCCGGCTTGCGCATCCCGC
380 TTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGC
* * * * *
18214346 CCCTTTGGCCGGCTGAGCGCCCGCGCGCTCGTTTCATCGGTTGACTTAGGGATACGGAGTTCATT
445 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * * *
18214411 CGCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGATCGAGGGTTGTGGCAGC
510 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA--TGACCGAGGGTTGCGACAGC
** * *
18214476 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTCCGTCGGGGCACCATTG-CTGGAGC
573 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGC
* * * *
18214540 TTTG-CTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGG-CTGGGGGGTGTGC
637 ATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCAGGGGGGTGTGC
*
18214603 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACC
700 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
18214668 TCGAGAACTCATACCCCCTTAAATAGCATTTGAGATTT
765 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
18214706 ACAANNNNNN
Statistics
Matches: 7656, Mismatches: 911, Indels: 505
0.84 0.10 0.06
Matches are distributed among these distances:
859 350 0.05
860 49 0.01
861 195 0.03
862 22 0.00
863 8 0.00
864 467 0.06
865 197 0.03
866 46 0.01
867 10 0.00
868 24 0.00
869 14 0.00
870 4 0.00
871 4 0.00
872 10 0.00
873 4 0.00
874 327 0.04
875 143 0.02
876 211 0.03
877 66 0.01
878 6 0.00
879 17 0.00
880 5 0.00
881 2 0.00
882 7 0.00
883 3 0.00
884 4 0.00
885 6 0.00
886 7 0.00
887 11 0.00
888 2 0.00
889 13 0.00
890 113 0.01
891 43 0.01
892 217 0.03
893 514 0.07
894 313 0.04
895 169 0.02
896 295 0.04
897 11 0.00
898 25 0.00
899 950 0.12
900 269 0.04
901 287 0.04
902 387 0.05
903 359 0.05
904 96 0.01
905 59 0.01
906 8 0.00
907 30 0.00
908 448 0.06
909 25 0.00
910 9 0.00
911 33 0.00
912 165 0.02
913 16 0.00
914 16 0.00
915 11 0.00
916 8 0.00
917 7 0.00
918 15 0.00
919 4 0.00
920 8 0.00
921 20 0.00
922 193 0.03
923 231 0.03
924 67 0.01
925 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCA
GGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGATGACCGAGGGTTGCGACAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
Found at i:18208178 original size:26 final size:26
Alignment explanation
Indices: 18208142--18208193 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18208132 GTTGACTTAG
18208142 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
18208168 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
18208194 TATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:18210342 original size:893 final size:875
Alignment explanation
Indices: 18205502--18214705 Score: 9489
Period size: 893 Copynumber: 10.3 Consensus size: 875
18205492 CCCAGTCTAA
* * * * * * * *
18205502 GCATACAGAGTTCATTCCCAATCTAAGA-TCGAACTGGACCAAGGGTTGCGACAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTATGATTAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *** * * *
18205566 GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTTGTCGGGGCACCATAGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCG-CGGAG
*
18205631 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
*
18205696 CGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
18205761 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
* * *
18205826 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTACGAATTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * **
18205891 TGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTCCAAAAAA
388 GGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
18205956 ATTTTAAAAAATCTCGAACGGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAAT-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
*
18206021 GCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
18206086 TTGGCACGCAAAAATATAAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
18206151 CATCCCGTCTCTCTGGTCGACGTAGTGCCCG-CC-CGTCCGCCCACTCTTTTCATCGGTTGGCTT
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCGTGCG-CCGCTCGTTTCGTCGGATGGCTT
* * * ** * **
18206214 AGGCATGCAGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCAAAAGTTGCGGTAG-AATGATC
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGGTAGCAGCGATC
* *
18206277 GG-CAGCACAC-AGAGGGGGA-C----CCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
775 GGACAG-AC-CGAG-GGGGGAGCGGATCCAACCGAT-CCCGGCTTGCGCATCCTGCCCCTCTGGC
* *
18206335 CGGCTGAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAG
836 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* **
18206375 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGAAC
1 GCATACGGAGTTCATTCCCAGTCT----AT-----G---------A-T-T-AGA-CCG---G-AC
* * * * * ***
18206440 CGAGGGTTGTGACAGCACAGGATGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCGTTGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
* * * *
18206505 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGAGGGGG
105 CACCATCGCCAGAGCATC-GCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGG
* * *
18206570 CCAGTGTGGGTGTGCGCACATGATGTGCGATGGGT-ATGTGTACTTGGCCCTTATATTGGCCGCC
168 CC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTG-GTACTTGGCCCTTATATTGGCCCCC
* *
18206634 TATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGC
230 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
18206699 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTAC
295 TGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
18206763 ACTTCGAGTTTTTAGTTGACTTTTTTT-TGCATGCCAACAAAAATAGAAGGATCACGTCTACCAA
360 ACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATACAAGGATCACATCTACCAA
* *
18206827 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATTCCCGAACCATAAAAAGTTTCAAAA
425 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATT--CGAACCGTAAAAAGTTTCAAAA
* *
18206891 ATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATT
488 ATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
18206956 GTATGAATTTACAAGCCATAAAAATGGCATTAGCACGTAGAAATATGATGATGTGCCTAAACCCA
553 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
** * * * * * * *
18207021 CCTAGTACCCTATCGATCCATGACTTACGCATCCCGTCTCTCTGTCTGGCGTAGTACCCTCCCGC
618 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-
*** * * ** **
18207086 CCACCCGCCTACTCATTTCGTC-GATTGGCTTATCCATACGGAGTTCATTCCCAGTCTAAGATTG
682 -CGTGCGCC-GCTCGTTTCGTCGGA-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * * *
18207150 GACCGAATCGAGGGTTGCGGTAGCA-AGATCAG-CAG--C-AGGCAGAGG-G-GGACCCGATCGA
744 GACCGGACCGAGGGTTACGGTAGCAGCGATCGGACAGACCGAGG--GGGGAGCGGATCCAACCGA
* * * * * *
18207208 TCCCTGGCTTGCGCATCCCGGCCCTCTGGCCGGCTGAGCACCCGTACACTCATTTCGTGGGTTGA
807 TCCC-GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
18207273 CTTAG
871 CTTAG
* * * * *
18207278 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACGGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTATGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** **
18207343 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAT---C---G--T--CGGAGAA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCGGAGAA
** * *
18207398 CCTGACCAACGGTATTAGGGTTCCGACGATCGGGTGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCG
** * * *
18207463 ATAAGTGCTGGTACTTGGCCCTTATCTTGGCCCCCTATCCCTCATCAAACTTTGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
18207528 CCCCTTAAAGAGCATTTGAGATTTTATAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGG
* * * *
18207593 GG-TACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGACTTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGG
* *
18207657 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-TCGAAAAAA
390 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAA
* * * ** * *
18207721 TTTTAAAAAATCCCGAACCGCAATAAGTTTCGTAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
454 TTTTAAAAAAT-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
* *
18207786 CCATGAAACTTCATGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * ** *
18207850 TGGCATGAAAAAATATGACGATGTGCCTAAACCCACCTATTACCCTATCGATCCACGACTTGCGC
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* **
18207915 ATCCCGTGTCTCTGGCTC-GCGTAGTGCCCAACCGCCCGCCCGC-CCGCTCGTTTCGTC-GACTG
648 ATCCCGTCTCTCTGGC-CGGCGTAGTG--C--CCGCCCGCGTGCGCCGCTCGTTTCGTCGGA-TG
* * ** * *
18207977 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAAGTGAGGGTTACGGCAGCA-AG
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGCG
* * * ** * * * * *
18208041 ATCGGTAGCAGGCAGA-GGAGGA-C---T-TGACTGATCCCTGGCTTGTGTATCCCGCCCCTATG
772 ATCGG-A-CAGACCGAGGGGGGAGCGGATCCAACCGATCCC-GGCTTGCGCATCCTGCCCCTCTG
* * *
18208100 GCCGACTGAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAG
834 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
18208142 GCATAAGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCT----AT-----G---------A---T--TA---GACCGGAC
* * ***
18208207 CGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTTGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
* * * * * * * * *
18208272 CACGATCGTCGGAGCATCACCGGAGAACCTGACCGACGACATTAGGGTTTCGATGATCGGGGGGG
105 CACCATCGCCAGAGCATC-GCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* **
18208337 CCGAGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTACCCCCTA
168 CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
18208402 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
232 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
18208466 CCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACAC
297 CCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
18208531 TTCGAGTTTTTAGCTGAATTTTGTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAT
362 TTCGAGTTTTTAGCTGAATTTT-TTTGGGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
* * *
18208596 TTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAGATCCAAAACCGTAAAAAGTTTCAAAAA
426 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA-ATTC-GAACCGTAAAAAGTTTCAAAAA
* * *
18208660 TCGTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTG
489 TCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* ** * * *
18208725 TACGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAAATAAAGATGTACCTAAACCCAC
554 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
18208790 CTACCACCCTATCGATCCACGGCTTGCACTTCCCG--TCTCTGGCCGACGTAGTGCCCACCCACC
619 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCC-CG
** * * *
18208853 CGCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
682 CGTGCG-CCGCTCGTTTCGTCGGATGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * *
18208918 CCGGAGTGAGGGTTGCGGTAGCAG-GAT-TGACAG-CACGCAGAGGGGGA-C----CCGATCGAT
746 CCGGACCGAGGGTTACGGTAGCAGCGATCGGACAGAC-CG-AG-GGGGGAGCGGATCCAACCGAT
* * **
18208975 CCTCGACTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
808 CC-CGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
18209040 TTAG
872 TTAG
* * ** * * *
18209044 GTATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTATGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** ** * *
18209109 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGTACCATTGCCAGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGC-GGAGA
* * * *
18209174 ACCTGACCGACGACATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
18209239 ATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * ** *
18209304 CACCTGAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATTG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGG
* * **
18209369 GGACACTTTTTCCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGG
** * ** *
18209434 TGTGCCAAAAAAAATACAAGGATCACATCTAGAAAGTTTGGGGCCAAAATTCCTTCTGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
**
18209499 TTTAAAAAATTCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
455 TTTAAAAAATTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
*
18209564 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * **
18209629 GGCACGTAGAAATATGAAGCTGTGTGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
584 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
18209694 TCCCATCTCTCT-GCCTGGCGTAGTACCCGCCCGTGTGTCCGCTCGCTCGTTTCGTTGGATGGCT
649 TCCCGTCTCTCTGGCC-GGCGTAGTGCCCGCCCGCGTG--CGC-CGCTCGTTTCGTCGGATGGCT
* * *
18209758 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGGCCGAGGGTTACGGTAGCACGCAGA
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCA-GC-GA
* * *
18209823 GGCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAAACCGATCCCAGCTTGCACATCCTGCC
773 -TCGGA-CAGACCGAGGG--G-GG-AGC-GGATC--C-AACCGATCCCGGCTTGCGCATCCTGCC
* **
18209888 CCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAG
828 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
18209936 GCATACGGAGTTCATTCCCAGTCTATGATTAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTATGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
18210001 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCGGGGCACCATCGCCAGAGCATCGTCGGATA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCG-CGGAGA
* * * *
18210066 ACCTGATCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGTGCACATGATGGGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
18210131 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACATCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
18210196 CCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
* *
18210261 GAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGG
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGG
* * * * * *
18210326 GCATGCCAGCAAAAATAAAAGGATCACCTCTACCAAGTGTGGGACCAAAACTCCTTC-CAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * ** * * *
18210390 GTTTTAAAAGATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAAAAGAAAACGAGTCGTCTT
454 -TTTTAAAAAAT-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
*
18210455 GCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* **
18210520 TTGCCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
18210585 CATTTCCGTCTCTCTGGCCGGCGTAGTACCCACCCGCGCGTCCTCTCGCTCATTTCGTCGGATGG
647 CA-TCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCC-CGCGTGCGC-CGCTCGTTTCGTCGGATGG
* * * **
18210650 CTTAGGCATA-GGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGACAGCACGCA
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCA-GC-
* ** * * * *
18210714 AAGGGGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGATCAATCCCAGGCTTGCACAT-CT
771 GA-TCGGA-CAGACCGAGGG--G-GG-AGC-GGATC--CA-ACCGATCCC-GGCTTGCGCATCCT
* * *
18210778 CGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGAGTTGACTTAG
825 -GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * * *
18210830 GCATACGAAGTTCATTCCCAGTCTATGATCGGATCGGACCGAGGGTTGCGGTAACACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTATGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
18210895 CTCGAGCATGTGCTGGTGCCACATTTTTTTTCACCGGGGCACTATCACCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCG-CGGAGA
* * * *
18210960 ACCTGATCGACGTCATTGGGGTTCCGGCGATCGGGGCGGCCGGGGGGGGTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCC--GGGGGGTGTGCGCACATGATGT
* * *
18211025 GCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACATCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
18211090 CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
* * * *
18211155 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCCGAATTGTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
18211220 GGGCATGCCAGCAAAAATAAAAGGATCACATCTACCACGTTTGGGACCAAAACTCCTTCCAAAAA
387 GGGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
18211285 AATTTTAAAAGATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAAT-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
18211349 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
18211414 ATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGT
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
18211479 ACATCCCGTCTCTCTAGCCGGCGTAGCGCCCG-CC-CGTTCGCCCGCACGTTTCGTC-GATTGGC
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCGTGCG-CCGCTCGTTTCGTCGGA-TGGC
*** * * *
18211541 TTAGGCATGTAGAGTTCATTCCCAG-CTAAGATCAGACTGGATCGAAGGTT---GT-G--GC-A-
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGCGAT
* * * *
18211597 -GGAC-G--C-A--GAGG-G-GGATCCAGCCGATCTCCGGGTTGCACATCCTGCCCCTAC-GGCC
774 CGGACAGACCGAGGGGGGAGCGGATCCAACCGATC-CCGGCTTGCGCATCCTGCCCCT-CTGGCC
* * * * *
18211652 AGCTGAGCACCCGCACGATCATTTTGTGGGTTGACTTAG
837 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
18211691 GCATGCGGATTTCATTCCCAGTCTATGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTATGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
18211756 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCACTGGGGCACCATCGCCAGAGCATCACCGCAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATC-GCGGAGA
* * * *
18211821 ACTTGATCAGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
18211886 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACATCGAGAACTCCCA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
18211951 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
*
18212016 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGG
* ** * *
18212081 GCATGCCAACAAAAATGCAAGGATCATGTCTACTAAGTTTGGGGCCAAAACT-CTTTTCGAAAAA
389 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAA
* * * * * * *
18212145 ATTTTCAAAAATCACGAACCGTAAAAAGTTTC-GAAATCATGAAAAATAGATAACGAGTCGTGTT
453 ATTTTAAAAAAT-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* *
18212209 GCCATTAAACTTTACGTGAAGGCTTAAGGGATCCATTGTATGAATTTACAAGCCATAAAAATGGC
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGA-CCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
18212274 ATTGGCACGCAGAAATAATGAAAGATGTGCCTAAATCCCACCTAGCAACCATAATCGATCCACGG
581 ATTGGCACGCAGAAAT-ATG-AAGATGTGCCTAAA-CCCACCTA-CCACCCT-ATCGATCCACGG
* * * * ** *
18212339 CTTGCCAACATTCCGTCTCCTCAGGCCGACGTACGTGCCCGCCTGCCCGCCAGCGCC-C-CATTT
641 CTTG-C-GCATCCCGTCT-CTCTGGCCGGCGTA-GTG--C-CC-GCCCGCGTGCGCCGCTCGTTT
* * * * **
18212402 CATCGGTTTGGGCTTAGAACATATCGGAGTTCATTCCTAAGTCTAAAGATTGGACCGGACCGAGG
698 CGTCGG-AT-GGCTTAG-GCATA-CGGAGTTCATTCC-CAGTCT-AAGATCAGACCGGACCGAGG
* * * * *
18212467 GTTAAGGCAGCAG-GATC-GATAGGCCGCAGAGGGGGA-C----CCGAA-CGGTCCTCGGTCTTG
757 GTTACGGTAGCAGCGATCGGACAGACCG-AG-GGGGGAGCGGATCC-AACCGATCC-CGG-CTTG
* * * * *
18212524 TGCATACTGCCCCTCTGGCTGGCAGAAGCGCCCGCACGCTCGTTTCCGTGGGTTAACTTAG
817 CGCATCCTGCCCCTCTGGCCGGCTG-AGCGCCCGCACGCTCGTTT-CGTGGGTTGACTTAG
* * *
18212585 GACATACAGAGTTCATT-CCAGTCTAAGAAAAGGAGGTTCATTCCCAGATATAAAGATCAGACCA
1 G-CATACGGAGTTCATTCCCAGTC--------------T-A-T----GAT-T--AGACCGGA-C-
* * * * * *
18212649 AACAGAGGGTTGTGGTAAGCA-AAGCTTGGGCTCGGGCATGTGCTGGTACCCGCATTTTTCTGCA
40 --C-GAGGGTTGCGG-CAGCACATGC-TGGGCTCGGGCATGTGCTGGT-GCCACATTTTTCTTCA
* * * * * * *
18212713 TC-GGGCACCATCGTCGGAGCATCGCCGAGAACCTGACCGGCGGCATTAGGGTTTCGGCGATCGG
99 CCGGGGCACCATCGCCAGAGCATCGCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
*
18212777 GGGGCCAGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
164 GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * * *
18212842 CTTATCCCTCCTCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTT
228 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
18212907 GCAGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAAATGGTCACAAAATCTTG
293 GCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTG
* * *** **
18212972 TACATTTTGAGTTTTTAGCTGAATTTTTTTCTACATGCCAACAAAAATACAAGGATCATGTCTAC
357 TACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATACAAGGATCACATCTAC
* * **
18213037 CAAGTTTGCGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAA
422 CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-TCGAACCGTAAAAAGTTTCAA
* *
18213102 AAATCATAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
486 AAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
18213167 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATTAAGATGTGCCTAAACC
551 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * *
18213232 CACCTACCATCCTATCGATCCACTGCTTGCGCATCCCATCTCTTTGGCCGGCGTAGTGCCCGCCC
616 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * *
18213297 GCCTGC-CCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGTTCAGA
681 GCGTGCGCCGCTCGTTTCGTCGGATGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * ** * * ** *
18213361 CCAGATCGAGGGTTGTGGCAGCAG-GATCGG-TAGCACATAGAGGGGGA-C----CCGACCGATC
746 CCGGACCGAGGGTTACGGTAGCAGCGATCGGACAG-ACCGAG-GGGGGAGCGGATCCAACCGAT-
* * * * * *
18213419 CCCGACCTGCGCATCCTGCACCTCTGGCCGGCTGAGTGCCTGCACGCTTGTTTCGTGGGTTGACT
808 CCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
18213484 TAG
873 TAG
* *
18213487 GCCTACGGAGTTCATTCCCAGTCTAAGCTTACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCT-A---T-----G---------A---T----T-AGACCGGAC
* * * *
18213552 CGAGGGCTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTG-CAGCATTTTTCTTCGCCGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA-CATTTTTCTTCACCGGG
* * * *
18213616 GCACCATCGTC-GAAGCATTGCCGGAGAACCTGACCGGCGGCATTGTGGTTCCGACGATTGGGGG
104 GCACCATCGCCAG-AGCATCG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGG
* * **
18213680 GGCCAGGGGGTGTGCGCACATGATGTGCGATGGGGGCTGGTACTTGGCCCTTATATTGGTGCCCT
166 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * *
18213745 GTCCCTCAACAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGAT
231 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
18213810 GCCAGCAACCATTAAAGTGT-TTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
296 GCCAGTAGCCATTAAAGTGTCTT-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*** * *
18213874 ACTTCGAGTTTTTTAACGCTGAATTGGATTGGTATGCATTTCCAAAAAAAAATACAAGGGATCAC
360 ACTTCGAG-TTTTT-A-GCTGAATTTTTTTGG---GCA-TGCC-AACAAAAATACAA-GGATCAC
* *
18213939 ATCTATCCAAGTTTGGGGCCAAAACTTCCTTCCGAAAAAAATTTTCAAAAATCTCGAACGCGTAA
416 ATCTA-CCAAGTTTGGGGCCAAAAC-TCCTTCTG-AAAAAATTTTAAAAAAT-TCGAAC-CGTAA
* *
18214004 AACGTTTCAAAAAATCGTGAAAAATAG-AAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGC
476 AAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGC
* * * * *
18214068 TTAGGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCATGTAGAAATACGAAGAT
540 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * * ** *
18214133 GTGCCAAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCTGTCTCTCTGATCGGGGT
605 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * *
18214198 AGTGCCCG-CC-C--GC-CCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGT
670 AGTGCCCGCCCGCGTGCGCCGCTCGTTTCGTCGGATGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
18214258 CTAAGTTCAGACCAGATCGAGGGTTACGATAGCAG-GATC-GACAGTA-CGCA---GAGAG-GGA
735 CTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGCGATCGGACAG-ACCG-AGGGGGGAGCGGA
* * * *
18214316 -CTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCGCGCTCGTTT
798 TC-CAACCGAT-CCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
18214380 CATCGGTTGACTTAG
861 CGTGGGTTGACTTAG
* *
18214395 GGATACGGAGTTCATTCGCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGAT
1 GCATACGGAGTTCATTC-C---C--AG--T-C-----T-A-T----G----AT-T-AGACCGGAC
* ** * **
18214460 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTCCGTCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
* ** * * *
18214525 CACCATTGCTGGAGCTTTGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGG
105 CACCATCGCCAGAGCATCGC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGG
* *
18214590 CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTAT
168 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
18214655 CCCTCATCAAACCTCGAGAACTCATACCCCCTTAAATAGCATTTGAGATTT
233 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
18214706 ACAANNNNNN
Statistics
Matches: 7161, Mismatches: 835, Indels: 635
0.83 0.10 0.07
Matches are distributed among these distances:
858 3 0.00
859 346 0.05
860 48 0.01
861 206 0.03
862 23 0.00
863 8 0.00
864 458 0.06
865 183 0.03
866 50 0.01
867 17 0.00
868 20 0.00
869 4 0.00
870 1 0.00
871 3 0.00
872 9 0.00
873 29 0.00
874 331 0.05
875 146 0.02
876 213 0.03
877 70 0.01
878 6 0.00
879 20 0.00
880 2 0.00
881 8 0.00
882 11 0.00
883 7 0.00
884 3 0.00
885 5 0.00
886 3 0.00
887 2 0.00
888 2 0.00
889 3 0.00
890 122 0.02
891 31 0.00
892 226 0.03
893 556 0.08
894 314 0.04
895 172 0.02
896 299 0.04
897 8 0.00
898 25 0.00
899 453 0.06
900 265 0.04
901 277 0.04
902 367 0.05
903 344 0.05
904 98 0.01
905 59 0.01
906 14 0.00
907 30 0.00
908 400 0.06
909 30 0.00
910 21 0.00
911 37 0.01
912 169 0.02
913 16 0.00
914 11 0.00
915 11 0.00
916 9 0.00
917 8 0.00
918 15 0.00
919 7 0.00
920 10 0.00
921 21 0.00
922 197 0.03
923 227 0.03
924 72 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
GCATACGGAGTTCATTCCCAGTCTATGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGC
ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAATTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCGTGCGCCGCTCGTTTCGTCGGATGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGCGATCGGACAG
ACCGAGGGGGGAGCGGATCCAACCGATCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:18214427 original size:26 final size:26
Alignment explanation
Indices: 18214397--18214446 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18214387 TGACTTAGGG
*
18214397 ATACGGAGTTCATTCGCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
18214423 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
18214447 TATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:18214442 original size:908 final size:889
Alignment explanation
Indices: 18211691--18214705 Score: 3649
Period size: 908 Copynumber: 3.3 Consensus size: 889
18211681 GTTGACTTAG
* * * * * *
18211691 GCATGCGGATTTCATTCCCAGTCTATGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
18211756 CTCGGGCATGTGCTGGTGCCA-CATTTTTTTTCACTGGGGCACCATCGCCAGAGCATCACCGCAG
66 CTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCACCGGGGCACCATCGCGA-AGCATCGCCGGAG
* * * * *
18211820 AACTTGATCAGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
* * * * *
18211885 TGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACATCGAGAACTCCC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
18211950 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGT-TTAAAT
*
18212015 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * *
18212080 TGCATGCCAACAAAAATGCAAGGATCATGTCTACTAAGTTTGGGGCCAAAACTCTTTTCGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
18212145 ATTTTCAAAAATCACGAACCGTAAAAAGTTTC-GAAATCATGAAAAATAGATAACGAGTCGTGTT
452 ATTTTCAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA-AACGAGTCATCTT
* *
18212209 GCCATTAAACTTTACGTGAAGGCTTAAGGGATCCATTGTATGAATTTACAAGCCATAAAAATGGC
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGA-CCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
18212274 ATTGGCACGCAGAAATAATGAAAGATGTGCCTAAATCCCACCTAGCAACCATAATCGATCCACGG
580 ATTGGCACGCAGAAAT-ATG-AAGATGTGCC-AAAACCCACCTA-CCACC-CAATCGATCCACGG
* * * * *
18212339 CTTGCCAACATTCCGTCTCCTCAGGCCGACGTACGTGCCCGCCTGCCCGCCAGCGCCCCATTTCA
640 CTTG-C-GCA-TCCGTCT-CTCTGGCCGGCGTA-GTG--C-CC-GCCCGCC--CG-CTCGTTTCA
* * * * *
18212404 TCGGTTTGGGCTTAGAACATATCGGAGTTCATTCCTAAGTCTAAAGATT-GGACCGGACCGAGGG
693 TCGG-TT-GGCTTAG-GCATA-CGGAGTTCATTCC-CAGTCT-AAG-TTCAGACCAGATCGAGGG
* * * * *
18212468 TTAAGGCAGCAGGATCGATAGGC-CGCAGAGGGGGACCCGAACGGTCCTCGGTCTTGTGCATACT
751 TTAAGGCAGCAGGATCGATA-GCACGCAGAGGGGGACCCGACCGATCCCCGG-CTTGCGCATCCT
* * * *
18212532 GCCCCTCTGGCTGGCAGAAGCGCCCGCACGCTCGTTTCCGTGGGTTAACTTAGGACATACAGAGT
814 GCCCCTCTGGCCGGCTG-AGCGCCCGCACGCTCGTTT-CGTGGGTTGACTTAGG-CATACGGAGT
18212597 TCATTCCAGTCTAA
876 TCATTCCAGTCTAA
* * * * * * *
18212611 G-AAAAGGAGGTTCATTCCCAGATATAAAGATCAGACCAAACAGAGGGTTGTGGTA-AGCA-AAG
1 GCATACGGA-GTTCATTCCCAG-TCT-AAGATCAGACCAGACCGAGGGTTG-CG-ACAGCACATG
* * * * *
18212673 CTTGGGCTCGGGCATGTGCTGGTACCCGCATTTTTCTGCATC-GGGCACCATCGTCGGAGCATCG
61 C-TGGGCTCGGGCATGTGCTGGT-GCAGCATTTTTCTTCACCGGGGCACCATCG-CGAAGCATCG
* * * *
18212737 CC-GAGAACCTGACCGGCGGCATTAGGGTTTCGGCGATC-GGGGGGCCAGGGGGGTGTGCGCACG
123 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCA-GGGGGTGTGCGCACA
* *
18212800 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCCTCAAACCTTGAG
187 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAG
* *
18212865 AACTCATACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCA-GCCAGTAGCCATTAAAGTG
251 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-ATGCCAGTAGCCATTAAAGTG
* * * *
18212929 TCTGAAATGGGGACACTTTTTTTAAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTAGCTGA
315 T-TTAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
18212994 ATTTTTTTCTACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGCGGCTAAAACTCCT
378 ATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCT
* * ** *
18213059 TCTGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATAAAAAATAGAAAACG
443 TCCGAAAAAATTTTCAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AAACG
18213124 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
507 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * *
18213189 AAAATGGCATTGGCACGCAAAAATATTAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCA
572 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCAATCGATCCA
* * * *
18213254 CTGCTTGCGCATCCCATCTCTTTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTTGTTTCATCGG
637 CGGCTTGCGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCTCGTTTCATCGG
**
18213319 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGTTCAGACCAGATCGAGGGTTGTGGCAGCA
697 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGTTCAGACCAGATCGAGGGTTAAGGCAGCA
* ** * * *
18213384 GGATCGGTAGCACATAGAGGGGGACCCGACCGATCCCCGACCTGCGCATCCTGCACCTCTGGCCG
762 GGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * *
18213449 GCTGAGTGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCCTACGGAGTTCATTCCCAGTCTAA
827 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
* * *
18213513 GCTTACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
18213578 CTCGGGCATGTGTTGGTGCAGCATTTTTCTTCGCCGGGGCACCATCGTCGAAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCG-CGAAGCATCGCCGGAGA
* *
18213643 ACCTGACCGGCGGCATTGTGGTTCCGACGATTGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
* * * * *
18213708 GATGGGGGCTGGTACTTGGCCCTTATATTGGTGCCCTGTCCCTCAACAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
18213773 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGCAACCATTAAAGTGTTTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTTT-AAATG
18213838 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTAACGCTGAATTGGAT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTT-A-GCTGAATT---T
** * * **
18213903 TGGTATGCATTTCCAAAAAAAAATACAAGGGATCACATCTATCCAAGTTTGGGGCCAAAACTTCC
382 TTTTATGCA-TGCC-AACAAAAATACAA-GGATCATGTCTA-CCAAGTTTGGGGCCAAAAC-TCC
* *
18213968 TTCCGAAAAAAATTTTCAAAAATCTCGAACGCGTAAAACGTTTCAAAAAATCGTGAAAAATAGAA
442 TTCCG-AAAAAATTTTCAAAAATCTCGAAC-CGTAAAAAGTTTC-AAAAATCATGAAAAATAGAA
* *
18214033 ACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCC
504 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * * *
18214098 ATAGAAATGGCATTGGCATGTAGAAATACGAAGATGTGCCAAAACCCACCTACCACCCCATCGAT
569 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCAATCGAT
** * **
18214163 CCACGGCTTGCGCATCCTGTCTCTCTGATCGGGGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGT
634 CCACGGCTTGCGCATCC-GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGT
* * **
18214228 TGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGTTCAGACCAGATCGAGGGTTACGATAGCAG
698 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGTTCAGACCAGATCGAGGGTTAAGGCAGCAG
* * * * * *
18214293 GATCGACAGTACGCAGAGAGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGG
763 GATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* * * *
18214358 CTGAGCGCCCGCGCGCTCGTTTCATCGGTTGACTTAGGGATACGGAGTTCATTCGCAGTCTAA
828 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CAGTCTAA
* * * * *
18214421 GCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * ** * * * * *
18214486 CTCGGGCATGTGCTGGTGCCGTATTTTTCTCCGTCGGGGCACCATTGCTGGAGCTTTGCTGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGC-GAAGCATCGCCGGAGA
* * **
18214551 ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCTGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
18214616 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCATA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCACA
*
18214681 CCCCCTTAAATAGCATTTGAGATTT
259 CCCCCTTAAAGAGCATTTGAGATTT
18214706 ACAANNNNNN
Statistics
Matches: 1806, Mismatches: 239, Indels: 112
0.84 0.11 0.05
Matches are distributed among these distances:
898 14 0.01
899 83 0.05
900 200 0.11
901 28 0.02
902 45 0.02
903 19 0.01
904 27 0.01
905 60 0.03
906 8 0.00
907 29 0.02
908 445 0.25
909 26 0.01
910 11 0.01
911 37 0.02
912 169 0.09
913 18 0.01
914 6 0.00
915 12 0.01
916 7 0.00
917 1 0.00
918 15 0.01
919 7 0.00
920 22 0.01
921 23 0.01
922 195 0.11
923 232 0.13
924 66 0.04
925 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGCGAAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTTTAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TCAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACGAGTCATCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGTTCAGACCAGATCGAGGGTTAAGGCAGCAGGATCGATAGCACGCAGAG
GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAA
Found at i:18218414 original size:26 final size:26
Alignment explanation
Indices: 18218363--18218414 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18218353 GCCATCCGAT
* **
18218363 CTTAAACTGGTAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
18218389 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
18218415 TCTAAGGCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:18220840 original size:26 final size:25
Alignment explanation
Indices: 18220804--18220880 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 25
18220794 GGTCTGATCG
18220804 TAGACTGGGAATGAACTCAGTATGCT
1 TAGACTGGGAATGAACTC-GTATGCT
18220830 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAAC-TCGTATGCT
*
18220856 TAGACTGCGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTC-GTATGC
18220881 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
25 2 0.04
26 44 0.92
27 2 0.04
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (25 bp):
TAGACTGGGAATGAACTCGTATGCT
Found at i:18221796 original size:26 final size:26
Alignment explanation
Indices: 18221741--18221816 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
18221731 GGTTCGATCG
*
18221741 TAGACTGGGAATGAAC-TCCTATGCT
1 TAGACTGGGAATGAACTTCGTATGCT
18221766 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTTCGTATGCT
*
18221792 TAGACTGCGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
18221817 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 16 0.33
26 32 0.67
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCT
Found at i:18223405 original size:26 final size:26
Alignment explanation
Indices: 18223354--18223406 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18223344 CCGGTCTGAT
*
18223354 CTTAGACTCAGAATGAACTGCATATG
1 CTTAGACTCAGAATGAACTCCATATG
** *
18223380 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTCAGAATGAACTCCATATG
18223406 C
1 C
18223407 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTCAGAATGAACTCCATATG
Found at i:18223885 original size:882 final size:878
Alignment explanation
Indices: 18221856--18225187 Score: 4492
Period size: 903 Copynumber: 3.7 Consensus size: 878
18221846 GCGCTCAGCC
* * * *
18221856 GCCAGAG-GACCGAGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTT
1 GCCAGAGAGA-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTT
* ** * * *
18221920 CATATTTTTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGT
65 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTT
* *
18221985 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGG
130 CACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
** * *
18222050 TTCGAGATTTTTTAAAATTTTTTCAAAAGGTGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTG
195 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TGGTAGACGTGATCCTTG
* * * *
18222115 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTA
259 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCA
* * * * *
18222180 TTTGAAAAAAGTATCCCCATTTCAAACACTTTTATGGCTGCTGGTAGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
18222245 AATGCTCCTTACGGTGGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
18222310 AAGTACCAGCACCCATCGCACATCATCTGCGCACA-CCCCCCAGCACCCCCGATCGTCGGTACCC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACCC
* * * ** *
18222374 CAATGCCATCCGACGATGGTGCCCCGACGAAGAAAAATACGGGACCAGCACATGCCCGAGCCCAG
518 CAATGCCGTCCGGCAATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
* * * *
18222439 CATGTGGTGCCGCAACCCTCGGTCTGGTCTGATGTTAGACTGGGAATGAACTTC-TATGCTTAGA
583 CATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * * *
18222503 CTGGGAATTAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCGACCA
648 CTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGC-GGCGCTCAGCCGACCA
* *
18222568 GAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
712 GAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGC
** * * * * * **
18222633 CAAAACCCTC-AGTCTGATCTGATCTTCGACTGGGAATGGACTTCATATGCCTAAGTGAACCGAC
777 CGCAACCCTCGA-TCCGATCTGATCTTAGACTGGGAATGAACTTCGTAGGCCTAAGCCAACCGAC
* * *
18222697 GAAACGAGCGGGCGGGCGGGC-GAG-GGGCACTACGCCG
841 GAAACGAGCGAGCGGGCGGGCTG-GCAGGCACTACGCCA
* * * *
18222734 GCCAGAGAAACGGGATGCGCAAGCCGTGGAACGATAGGGTGGTAGG-TGGCTTTAGGTACGTCTT
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGG-TTTAGGCACATCTT
* * * **
18222798 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGTGTT
65 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTT
* * * * ** **
18222863 CACGTTAAGTTTCATAGCAAGACTACTCGTTTTCTATTTTTTTCGATTTTCAAAACTTTTTACGG
130 CACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* *
18222928 TTCGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTG
195 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT-GGTAGACGTGATCCTTG
* *
18222993 TATTTTTTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
259 TA----TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTG
* *
18223058 ACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
320 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
18223123 TTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
385 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
18223188 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCCGACCCTCCCGATCGTC-G
450 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCC-CCCGATCGTCGG
** * * * *
18223252 AACCCCAATGCCGTCCGGCAAT-GTGCCCCGGTGAAGAAAAATGTGGCACCAGGACTTGCTCAAG
513 AACCCCAATGCCGTCCGGCAATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
** *
18223316 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTCAGAATGAACTGCATATGC
578 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
*
18223381 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGTGCGCTTAGCC
643 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCG-GCGCTCAGCC
* * * * *
18223446 GACCAGAGGGGTAGAATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTGTGTGCTACCGATCCT
707 GACCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCT
* * * * *
18223511 ACTACCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTTTGTAGGCCAAAGCCAAC
772 ACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTAGGCCTAAGCCAAC
*
18223576 CGACGAAATGAGCGAGCGGGCGGGCTGGCAGGCACTACGCCA
837 CGACGAAACGAGCGAGCGGGCGGGCTGGCAGGCACTACGCCA
*
18223618 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTTGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTC
*
18223683 ATATTTCTGTGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTC
66 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTC
*
18223748 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGT
131 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* *
18223813 TCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATTGTAGACGTGATCCTTGT
196 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TGGTAGACGTGATCCTTGT
*
18223878 A-TTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCAT
260 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCAT
18223942 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * * *
18224007 ATGTTGTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
18224072 AGTACCAGCACCCATCGCACATCATGTTCGCACACCCCCCTGGCCCCCCCGATCGTCGGAACCCC
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCC
18224137 AATGCCGCCAGTCAGGTTCTCCGGTGATGCTCTGATGATGGTGCCCCGACGAAGAAAAATGTGGC
519 AAT---G-C---C--G---TCC---G--G--C--A--ATGGTGCCCCGACGAAGAAAAATGTGGC
* * * *
18224202 ACCAGCACATGCCCGAGTCTAGCATGTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGG
561 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
18224267 GAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAG
626 GAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAG
* * * * *
18224332 CGTGCCGGTGCTCAGTCGACCAGAGGGGCAGGACGCACAAGCTGGGGATCGGCCGGGTCCCCCTC
691 CGTG-CGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTC
* * * *
18224397 TGTGTGCTGCCAATCCTACTGTCGCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTC
755 TGTGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTT
* * * * * * *
18224462 CGTAGGCCTAAGCCAACCGATGAAACAAGAGAGCGGGCGGGCTGGCAAGCACTATGTCT
820 CGTAGGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCTGGCAGGCACTACGCCA
* * *
18224521 GCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTTGGTTTAGGTACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTC
* *
18224586 ATATTTCTGTGTGCCAATTCCATTTTTATGGCTTTTAAATTCATACAACGGTCCCTTAAGCCTTC
66 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTC
* * *
18224651 ACGA-GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACTATTTTTGAAACTTTTTGCGG
131 AC-ATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * *
18224715 TTCAAGATTTTTAAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTG
195 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TGGTAGACGTGATCCTTG
* * *
18224780 TATTTTTTTTCGCTTGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCA
259 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCA
18224845 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
18224910 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
18224975 AAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCACCGGCCCCCCGATCATCAGAACCC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGGCCCCCCGATCGTCGGAACCC
* *
18225040 CAATGCCGTCGGTCAGGTTCTCTGACAATGCTCAGACGATGGTGCCCCGATGAAGAAAAATATGG
518 CAAT---G-C---C--G-TC-C-G-----G--C--A--ATGGTGCCCCGACGAAGAAAAATGTGG
* *
18225105 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGT-TCGATCTTAGACT
560 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACT
*
18225169 GGGAATGAACTCCGTATGC
624 GGGAATGAACTCCATATGC
18225188 CTAAGCCAAC
Statistics
Matches: 2188, Mismatches: 214, Indels: 78
0.88 0.09 0.03
Matches are distributed among these distances:
877 3 0.00
878 237 0.11
879 233 0.11
882 299 0.14
883 219 0.10
884 258 0.12
885 4 0.00
886 1 0.00
888 1 0.00
891 3 0.00
894 1 0.00
896 1 0.00
898 1 0.00
900 1 0.00
901 2 0.00
902 4 0.00
903 551 0.25
904 366 0.17
905 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTC
ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTC
ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTGGTAGACGTGATCCTTGTA
TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAA
TGCCGTCCGGCAATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGCGCTCAGCCGACCAGAGG
GGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCCGCA
ACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTAGGCCTAAGCCAACCGACGAAAC
GAGCGAGCGGGCGGGCTGGCAGGCACTACGCCA
Found at i:18224293 original size:26 final size:26
Alignment explanation
Indices: 18224257--18224309 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18224247 CCGGTCTGAT
18224257 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18224283 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18224309 C
1 C
18224310 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18225912 original size:26 final size:26
Alignment explanation
Indices: 18225874--18225925 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18225864 CCGGTCCGAT
18225874 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18225900 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18225926 ACAAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18229633 original size:877 final size:870
Alignment explanation
Indices: 18227380--18229838 Score: 3220
Period size: 873 Copynumber: 2.8 Consensus size: 870
18227370 ACTTCATATG
* * *
18227380 CTTAGACTGGGAATGAACTCTGTATGCCAAAGTGAACCCATAAAACGAGCGTGCGGGTGCTCAG-
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * * ** * * *
18227444 TCGACTAGAGGGGTGCGATGCGTAAGCCAAGGATCGGCCAGGTCCTCATCTACGTGCTGCCAATC
66 T-GGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCGG-CGGGTCCCCCTCTACGTGCTGCCAATC
* * * * * * *
18227509 CTGCTGCCGTAACCCTCGGT-CTGGTCTAATCTTAGACTCTGAATTAACTCCGTATGCCTAAGCC
129 CTGCTACTGTAACCCTTGGTCCAGTTC-GATCTTAGA-TCAGAATTAACTCCGTATGCCTAAGCC
* * *** * *
18227573 AACCGACGAAATGA-CA-----GGGCGGGCGGGCACTACATCGTCCAGAGAGACAAGATGCGCAA
192 AACCGATGAAACGAGCAGCGGGGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGAGATGCGCAA
* *
18227632 GCCGTGGATCGATAGGGTGTTAGGTGGGTTTAGAGACATCTTCATATTTCTGTGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCA
*
18227697 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18227762 GACTCGTTATCTATTTTTCATAATTTTCAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
387 GACTCGTTTTCTATTTTTCACAATTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* *
18227827 AGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCGTTGTATTTTTGCTGGCATGCACAAAAA
452 AGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
18227892 CATTCAGCTAAATACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
** * * *
18227957 GACACTTTAATGGCTACTAACAGCAAACTTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** * *
18228022 TCTCGAACTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATC
647 TCTCGAGGTTTGATG-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** *
18228087 ATGTGTGCACACCCCCCCGAAACCCCTGATCATCGGAACCCCAATGCCGCCGGTCCGGTTCTCTA
711 A--TGTGCACACCCCCCCGAAACCCCTGATCATCGGAACCCCAATGCCGCCGGTCAAGTTCTCCA
* * * * *
18228152 GCGATGCTCGGGTGATGGTGTCCCAACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAAT
774 GCGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAAC
*
18228217 ATGTGCTGCTACAACCCTCGATCCGGTCTGAT
839 ATGTGCTGCTACAACCATCGATCCGGTCTGAT
* * * *
18228249 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTG-GGAGTGCTCAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG-GTGCTCAG
* * * **
18228313 CCGGCCAGAGGGGCGGGATGCGCAAG-TCGGGGATCGGCTGGGTCCCCCTCTATGTGCTGTGAAT
65 CTGGCCAGAGGGGCGGGATGCGCAAGCT-GAGGATCGGC-GGGTCCCCCTCTACGTGCTGCCAAT
* * * ** * *
18228377 -C--CTACTGTCAGAACCTTCGGTCCAATTTGATCTTAGACTGGGAATGAACTCCGTATGCCCAA
128 CCTGCTACTGT-A-ACCCTT-GGTCCAGTTCGATCTTAGA-TCAGAATTAACTCCGTATGCCTAA
** * * * * *
18228439 GCCAATGGATGAAACGAGC-G-GGCGGGCAGGCGGGCGCTATGCCGGCCAGAGAGACGGGATGTG
189 GCCAACCGATGAAACGAGCAGCGGGGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGAGATGCG
** * **
18228502 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCATACCAACA
254 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATG
*
18228567 TCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
319 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
18228632 GACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGAGTTTTTAAAATTT
384 GACGACTCGTTTTCTATTTTTCAC-AATTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* * * *
18228697 TTTCGGAGGGAGTTTTGGCCCCAAACTTGTTAGATGTGATCCTTATATTTTTGTTGGCATGCACA
448 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACA
*
18228762 AAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
18228827 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
18228892 GAGTTCTCGAGGTTTGATGTGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCA
643 GAGTTCTCGAGGTTTGATG-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*** * *
18228957 CATCATGTGCACACACCCCCCGGCCCCCCTGATC-GCTGGAACCCCAATGCCGTCGGTCAAGTTC
707 CATCATGTGCACAC-CCCCCCGAAACCCCTGATCATC-GGAACCCCAATGCCGCCGGTCAAGTTC
* *** **
18229021 TCCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCACATGGTCGAGCC
770 TCCAGCGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATATGGCACCAGCACATGCCCGAGCC
* * * *
18229086 CAGCATGTGCTG-TCGCAAGCATCGGTCCGGT-TCGAT
835 CAACATGTGCTGCT-ACAACCATCGATCCGGTCT-GAT
* * **
18229122 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* *
18229187 TGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATTGGTCGGGTCCCCCTCTACGTGCTACCAATCC
66 TGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCGG-CGGGTCCCCCTCTACGTGCTGCCAATCC
* * *
18229252 TGCTACTGTAACCCTTGATCCAGTTCGATCTTAGATCAAGAATTAACTCTGTATGCCTAAGCTAA
130 TGCTACTGTAACCCTTGGTCCAGTTCGATCTTAGATC-AGAATTAACTCCGTATGCCTAAGCCAA
*
18229317 CCGATGAAACGAGCAGGCGGGTGGGCGGGCGGGCACTATGCCGGCTAGAGAGACGAGATGCGCAA
194 CCGATGAAACGAGCA-GCGGG-GGGCGGGCGGGCACTATGCCGGCCAGAGAGACGAGATGCGCAA
*
18229382 GCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCA
* * * *
18229447 TTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGCCAGGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
18229512 GACTCGTTTTCTATTTTTCACAAATTTCAAAATTTTTTGTGGTTCAAGATTTTTTAAAACTTTTT
387 GACTCGTTTTCTATTTTTCACAATTTTC-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * * ** *
18229577 CAGAAAGAGTTTTTGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCA-AAAA
451 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
18229641 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18229706 AGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTTAAATGCCCTTTAAGGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18229771 TTCTCCAGGGTTT-ATGGGGATA-GGGGCCAATAT-AGGG-CAAGTACTAGCA-CCATCGCACAT
646 TTCTCGA-GGTTTGATGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
18229831 CAATGTGC
710 C-ATGTGC
18229839 GCGCAGCCCC
Statistics
Matches: 1376, Mismatches: 182, Indels: 61
0.85 0.11 0.04
Matches are distributed among these distances:
866 5 0.00
867 1 0.00
868 8 0.01
869 144 0.10
870 3 0.00
871 12 0.01
872 30 0.02
873 453 0.33
874 298 0.22
875 8 0.01
876 151 0.11
877 263 0.19
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (870 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
TGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCGGCGGGTCCCCCTCTACGTGCTGCCAATCCT
GCTACTGTAACCCTTGGTCCAGTTCGATCTTAGATCAGAATTAACTCCGTATGCCTAAGCCAACC
GATGAAACGAGCAGCGGGGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACAATTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAA
GGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CACACCCCCCCGAAACCCCTGATCATCGGAACCCCAATGCCGCCGGTCAAGTTCTCCAGCGATGC
TCCGGCGATGGTGCCCCAACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAACATGTGCT
GCTACAACCATCGATCCGGTCTGAT
Found at i:18230739 original size:26 final size:26
Alignment explanation
Indices: 18230690--18230742 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18230680 TCGGTCCGAT
* *
18230690 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18230716 CTTAGATTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18230742 C
1 C
18230743 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18231616 original size:26 final size:26
Alignment explanation
Indices: 18231580--18231656 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
18231570 GGTTCTATTC
* *
18231580 TAGACTAGGAATGACCTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
18231606 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
18231632 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18231657 CTAAGTTAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18233403 original size:26 final size:26
Alignment explanation
Indices: 18233374--18233426 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18233364 CCGGCCCGAT
*
18233374 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18233400 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18233426 C
1 C
18233427 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18234368 original size:885 final size:881
Alignment explanation
Indices: 18230646--18235106 Score: 4963
Period size: 885 Copynumber: 5.0 Consensus size: 881
18230636 ATCGGAACCC
* * * * * *
18230646 CCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATTAACT-T
1 CCCGAGCCCAGCATGTGCAGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCT
* * * * * * **
18230710 CGTATGCTTAGATTGGGAATGCACTCCGTATGCCTAAGTCAAGCAATGAAACGGGCAAGCGGGCG
66 -GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
18230775 CTCAGCCG-GCCAGAGGGGCGGGATGCGCAAGCTGAGGATCGGTCGGGTCCCCCTCTACGTGCTG
130 CTCAG-CGAGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGCGTGCTG
* *
18230839 CCAATCCTGCTGCTGCAACCCTCGGTCTGGTCCGATGTTAGACTGGGAATGAACTTCGTATGCCT
194 CCAATCCTGCTGCTGCAACCCTCGGTCTGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCT
** * * *
18230904 AAGCCAACCGACAAAAC--GA-GCGGGCAGGCGG-GCACTACGTCAGCCAGAGAGACTGGATGCG
258 AAGCCAACCGATGAAACGAGAGGCGGGCGGGCGGCGCACTACG-CGGCCAGAGAGACAGGATGCG
* * * * *
18230965 CAAGCCATGGATCGATAGGGTGGTAGGAGGTTTTAGGCACATCTTCACATTTTTGTGTGCCAATG
322 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT--CA-TATT-TCTGCCAATG
18231030 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
383 CC----TTATGGC---T-AATT-ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
18231095 GACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACTGTTTGGGATGTTTTAAAATTT
439 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTT
** *
18231160 TTTTGAAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACA
504 TTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
18231224 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTTCCCAT
569 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18231289 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAACGCTCTTTAAGGGGGTGT
634 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
18231354 GAGTTCACGAGGTTTGATG-GGAGATAGGGGGCCCAATATAAGGTCCAAGTA-CAGCACCC-TCG
699 GAGTTCTCGAGGTTTGATGAGG-GATAGGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
18231416 CACAT-ATGT--GTACA-CCCCCG--GCCCCGATCGC-CGGTAACCACAATGCCCGTCGGTCAGA
762 CACATCATGTGCGCACACCCCCCGCCCCCCCGATC-CTC-GAAACC-CAATG-CCGTCGGTCAG-
* *
18231474 GTTCTCCGATGATGCTCCGGCGATGGTGCCCCCGA-GAAGAAAAGTGCGGCA-CAGCA-ATG
822 GTTCTCCGATGATGCTCC-GCAATGGTG-CCCCGACGAAGAAAAATGCGGCACCAGCACATG
* *
18231533 CCCGAGCGCAGCATGTTGC-GCCCGCAAACATCGGTTCGGTTCTATTCTAGACTAGGAATGACCT
1 CCCGAGCCCAGCATG-TGCAG-CCGC-AAC--C--CTCGG------TC----C-A-G--T----T
*
18231597 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
41 -CG-AT-CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
18231662 TTAACCCACGAAATGACCGTGCGGGCGCTCAGCCAGCCAAAGGGG-AGGGATGCGCAAGCCGGGG
103 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGAGCCAGAGGGGCA-GGATGCGCAAGCCGAGG
* * * * ** * *
18231726 ATTGGCCGGGT-CCCCTTCTGCGTGCTGCCAATTCTGCTACCACAA-CCTCAGTCTGGTACAATC
167 ATCGGTCGGGTCCCCCTT-TGCGTGCTGCCAATCCTGCTGCTGCAACCCTCGGTCTGGT-CGATC
* *
18231789 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT-AAAAG-GA-GCTGGCGGGCGG-GC
230 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGAGGCGGGCGGGCGGCGC
*
18231850 ACTACGTCGGCCAGAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
295 ACTACG-CGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
18231915 CACATCTTCATATTTTTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
359 CACATCTTCATA--TTT--CTGCCAATGCC----TTATGGC---T-AATT-ATACAATGGTCCCT
* * * *
18231980 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTTTTATAATTTTCGAAACT
411 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * * *
18232045 TTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGAAAAGGCGTTTTGGCCCCAACCTTGGTAGACG
476 TTTTACGGTTTGGGATTTTTTAAAATTTTTTC-AAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
18232110 TGATCCTTGTATTTTTTTTTGGCATACAC-AAAAAATTCAGCTTAAAACTCGAAGTGTACAAGAT
540 TGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
*
18232174 TTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
604 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* **
18232239 TAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAA
669 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
18232304 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCAATCGT
734 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCCT
* * * *
18232369 CGGACCCTCTATGCAGTCGGTCAGGTTCTCC---G--G---CG--A----------A-GAA-AAA
799 CGAAACC-CAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGCAATGGTGCCCCGACGAAGAAA
*
18232412 TAT--GGCACCAGCACATG
863 AATGCGGCACCAGCACATG
* * * *
18232429 CCCGAGCCTAGCATGTGCTGCTGCAACCCTCGGTCC-GGTCTGATCTTAGACTGGGAATGAACTC
1 CCCGAGCCCAGCATGTGCAGCCGCAACCCTCGGTCCAGTTC-GATCTTAGACTGGGAATGAACTC
* ** *
18232493 TGTACGCTTAGACTAAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTC-GAC
65 TGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGC
** * * * * *
18232557 GCTCAGCCG-GCCAGAGTAGCGGGATGCGCAAGCTGAGGATCGGCCAGGTCCCCCTCTGCGTGCT
129 GCTCAG-CGAGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGCGTGCT
** * * * * *
18232621 GCTGATGCTGTTGCTGCAACCCTCGATCCGGTCAGATCTTGGACTGGGAATGAACTCCGTATGCC
193 GCCAATCCTGCTGCTGCAACCCTCGGTCTGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
18232686 TAAACCAACTGATGAAACGAGTGGGCGGGTGGGCTGGCGGGCACTACGCCGGCCAGAGAGACGGG
257 TAAGCCAACCGATGAAACGAG-AGGCGGGCGGGC-GGC--GCACTACG-CGGCCAGAGAGACAGG
*
18232751 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCAGCGTGC
317 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT---C-TGC
*
18232816 CAATGCCATTTTTATTGTTTG-TAAATTCATACAATGGTCCGCTTAAGCCTTCACGTGATGTTTC
378 CAATGCC----TTA-TG---GCT-AATT-ATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTC
**
18232880 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG-TCAGGATTTTTT
432 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTT
* *** * * * * *
18232944 AAAATTTTGTCTTGAGGAGTTTTGGCCCCAAACTTCGTACACATGATCCTTGCATTTTTGTTGGC
497 AAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
* *
18233009 ATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTAT-TGACCATTTGAAAAAAGT
562 ATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT-TGTGACCATTTGAAAAAAGT
* * *
18233073 TTCCCCATTTCAGACACTTTAATTGCTACTGGCAACAAACCTGT-AAATCTCAAATGCTCTTTAA
626 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
18233137 GGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
691 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * * * *
18233202 CCATCGCACATCATATGAGCACACCCCCCGGCCCCTCGATCGTCGGAATCCCAATGCCGTCGATT
756 CCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCCTC-GAAACCCAATGCCGTCGGTC
* * *
18233267 AGGTTCTTCGAT-ATTGCTCCTGCAATGGTTCCCCGACGAAGAAAAATGTGGCACCAGCACATG
820 AGGTTCTCCGATGA-TGCTCC-GCAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * * ** *
18233330 CCTGAGCCCAGAATGTGCCA-CCGCAACCCTCAGTCCGGCCCGATCTTAGACTGGGAATGATCTC
1 CCCGAGCCCAGCATGTG-CAGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTC
* * *
18233394 CGTATGCTTATACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCG
65 TGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
18233459 CTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGTGTGCTGC
130 CTCAGCGAGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGCGTGCTGC
*
18233524 CAATCCTACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
195 CAATCCTGCTGCTGCAACCCTCGGTCTGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
18233589 AGCCAACCGATGAAACGAGAAGGGGGGCGGGCGGGCTAGCACTACGCGGGCCAGAGAGATAGGAT
259 AGCCAACCGATGAAACGAG-AGGCGGGCGGGC-GGC--GCACTACGC-GGCCAGAGAGACAGGAT
* * *
18233654 GTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-AC-ATGC
319 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAATGC
** *
18233717 C-TAT-GC-AATT-T-TTATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
384 CTTATGGCTAATTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
18233777 TTTCTATTTTTCTTGATTTTTGAAACTTTTTGCTGTTTGGGATTTTTAAAAATTTTTTCAAAAGG
449 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAAAAGG
* * *
18233842 AGTTTTGGCCCCAAACTTGGAAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCA
514 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
*
18233907 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACT
579 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
18233972 TTAATGGCTACTGGCAGCAAACTTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
644 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
18234037 GGTTCGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
709 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
18234102 GCACACCCACCCCGACCCCCCCGATCACTCGAAACCCAATGCTGCCGGTGAGGTTCTCCGATGAT
774 GCACA-CC-CCCCG-CCCCCCCGATC-CTCGAAACCCAATGCCGTCGGTCAGGTTCTCCGATGAT
* **
18234167 GCACCGACAATGGTGCCCCGACGAAGAAAAATGCGTTACCAGCACATG
835 GCTCCG-CAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * *
18234215 CCCGAGCCCAACATGTGCAGCCGTAACCCTCGGTCCAGTTCGATCTTTGACTGGGAATGAACTCT
1 CCCGAGCCCAGCATGTGCAGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCT
*
18234280 GTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
66 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * *
18234345 TCAGCGAGCCAGAGGGGCAGGATGGGCAAGCCGAGGATCGATCGGGT-CCCCTTCTACGTGCTGC
131 TCAGCGAGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTT-TGCGTGCTGC
* ** * * ** *
18234409 CGATCCTGCCCCCGCAACCCTTGGTAAGGTGCGATCTTAGACTGGGAATGAACTCAGTATGCCTA
195 CAATCCTGCTGCTGCAACCCTCGGTCTGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
18234474 AGCCATCCGACGAAACGAGCTGGCGGGCGGGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGAT
259 AGCCAACCGATGAAACGAG-AGGCGGGCGGGC-GGC--GCACTACG-CGGCCAGAGAGACAGGAT
*
18234539 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTGCATGCCA
319 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TT-T-C-TGCCA
*
18234604 ATCCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
380 ATGCC----TTATGGC-T---AATT-ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
*
18234669 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAA
436 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAA
* * *
18234734 TTTTTTCAGAAA-AAGTTTTGGTCCCAAACTTGG-ATGACGTGATCCTTGTATTTTTGTTGGCAT
501 TTTTTTCA-AAAGGAGTTTTGGCCCCAAACTTGGTA-GACGTGATCCTTGTATTTTTTTTGGCAT
*
18234797 GCACAAAAATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
564 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
18234862 CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATG--C--------
629 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
18234917 ----TGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
694 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* ** * * * * *
18234978 TCGCACATTATGTGCGCACACCCCCCCGGCCCCCCCGATCACAAGAACCCCAATGCTGCCAGTTA
759 TCGCACATCATGTGCGCACA-CCCCCC-GCCCCCCCGATC-CTCGAAACCCAATGCCGTCGGTCA
* * * * *
18235043 GGTTCTCCAATGATGCTCCGACGATGGTGCGCCGACGATGAAAAATGTGGCACCAGCACATG
821 GGTTCTCCGATGATGCTCCG-CAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
18235105 CC
1 CC
18235107 TAAGCCAACC
Statistics
Matches: 3076, Mismatches: 352, Indels: 289
0.83 0.09 0.08
Matches are distributed among these distances:
869 132 0.04
870 59 0.02
871 6 0.00
872 1 0.00
874 8 0.00
875 2 0.00
876 157 0.05
877 133 0.04
878 131 0.04
879 71 0.02
880 72 0.02
881 171 0.06
882 104 0.03
883 2 0.00
884 21 0.01
885 399 0.13
886 7 0.00
887 16 0.01
888 8 0.00
889 5 0.00
890 98 0.03
891 86 0.03
892 1 0.00
893 4 0.00
894 7 0.00
895 16 0.01
896 25 0.01
897 8 0.00
898 4 0.00
899 6 0.00
900 3 0.00
901 333 0.11
902 7 0.00
903 2 0.00
904 2 0.00
905 261 0.08
906 3 0.00
907 1 0.00
908 1 0.00
910 2 0.00
911 4 0.00
912 7 0.00
913 274 0.09
914 189 0.06
915 154 0.05
916 26 0.01
917 4 0.00
919 11 0.00
920 16 0.01
921 8 0.00
922 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (881 bp):
CCCGAGCCCAGCATGTGCAGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCT
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCGAGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGCGTGCTGCC
AATCCTGCTGCTGCAACCCTCGGTCTGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGATGAAACGAGAGGCGGGCGGGCGGCGCACTACGCGGCCAGAGAGACAGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAATGCCTTATGG
CTAATTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGCCCCCCCGATCCTCGAAACCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGCAATG
GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
Found at i:18236114 original size:159 final size:158
Alignment explanation
Indices: 18235825--18236186 Score: 409
Period size: 159 Copynumber: 2.3 Consensus size: 158
18235815 ACTCCGTATG
* * * * * * * *
18235825 CTTAGACTAGGAATGAACTCTGTATGGCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTATGGGAGCTCAAC
* * * * **
18235890 CAGCCATAGGGGCAAGATACACAAGCCGGGGATCGGTCGGGTCCCCCTTTTCGTGCTGTGGATCC
66 CAGCCAGAGGGGCAAGATACACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* **
18235955 TGCTATAGCAACCCTCCATCTGGTCCAAT
131 TGCTACAGCAACCCTCCATC-CATCCAAT
* **
18235984 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGTATGGGAGCTCTGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTATGGGAGCTCAAC
* ** * * * * *
18236049 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATTGGTTCCCCCTCTGCGTGCTGCCGATCC
66 CAGCCAGAGGGGCAAGATACACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** *
18236114 TGCTGCCGCAACCCTCGGTCCATCCGAT
131 TGCTACAGCAACCCTCCATCCATCCAAT
*
18236142 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
18236187 TAAGCGGGCG
Statistics
Matches: 168, Mismatches: 35, Indels: 1
0.82 0.17 0.00
Matches are distributed among these distances:
158 48 0.29
159 120 0.71
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTATGGGAGCTCAAC
CAGCCAGAGGGGCAAGATACACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACAGCAACCCTCCATCCATCCAAT
Found at i:18236886 original size:26 final size:26
Alignment explanation
Indices: 18236847--18236899 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18236837 CGGGTTCGAT
18236847 CTTAGACTGAGAATCAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
* *
18236873 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
18236899 C
1 C
18236900 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:18239101 original size:878 final size:875
Alignment explanation
Indices: 18235962--18245776 Score: 11477
Period size: 905 Copynumber: 11.1 Consensus size: 875
18235952 TCCTGCTATA
** * * **
18235962 GCAACCCTCCATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
1 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
** * * * * * *
18236027 AACGAGCGTATGGGAGCTCTGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATTGGTTC
66 AACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * ** *
18236092 CCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-CATCCGATCTTAGACTGGGAAT
131 CCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
* ** * *
18236156 GAACTCCGTATGCCTAAGCTAACCGACGAAATAAGCGGGCGGGCGGACGGGCAGGCACTACGTCG
196 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG--GGGCGGGCACTACGCCG
* *
18236221 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGTACATCTTC
259 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** * *
18236286 ATATTTCTGGGTGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATC
324 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
18236351 ACGTGAAGTTT-ATTGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
389 ACGTGAAGTTTCA-TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG
** * * * * *
18236415 TTCGAGATTTTTTAAAATTTTTT-TAAAGCAATTCTGGTCCCAAAGTTGGTAGACGTGATCCTTG
453 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
18236479 TATTTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
518 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
18236544 TTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACGGCTACTGGCAACAAACCTATAAAATCTCA
583 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
18236609 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCC
648 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
18236674 AAGTACCAGCACCCATCG-ACATCATGTGCGCACAGCCCCCC-GACCCCCCGATCGTCGGAACCC
713 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCC
* ** *
18236737 CATTGCCGCTTGTCAGGTTCT-C--CG--G-T-----GATGGTGCCCCGACGAAGAAAAATGTGG
777 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* *
18236791 CACCAGCACATGCCCCAGCCCAGCATGTGCTACC
842 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
18236825 GCAACCCTCGGTCGGGTTCGATCTTAGACTGAGAATCAACTCCGTATGCTTAGACTGGGAATGAA
1 GCAA-CC-C--TC--G---G----T---CTG-G-------TCCG-AT-CTTAGACTGGGAATGAA
** * * *
18236890 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAACTTAGCCGACCAGAGGGGCGAGA
40 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
* *** * * * *
18236955 TGCACAAGCCGGGGATCAACCGGGTCCCCC-CTACGTGCTGCCGATCTTGCTGCCGTAACCCTCA
105 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTCG
* *
18237019 GTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-CGAG
170 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * *
18237080 TGGGC--GAGCGGGCACTACGCCGGCC--AGCGACGAGATGCGCAACCCGTGGATCGATAGGGTG
235 CGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
18237141 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGGATGCCAATACCATTTTTATGGCTTGTAAATT
300 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
*
18237206 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTT
365 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
** * * * *
18237271 ACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTGAAATTTTTTCGGAAAGAGTTTTGGCCCC
430 ACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * *
18237336 AAACTTGGTAGACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAAGTTG
495 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
18237401 AAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATACT
560 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
18237466 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATG
625 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * *
18237531 GATAGGGGACCAATATAAGGGTCAAGTACCAGCACCCATTGCACATCATGTGCGAACACCCCCCG
690 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * ** *
18237596 G-CCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTACGGGGATGCTCCGGCGATGGT
755 GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* *
18237660 GCCCTGACGAAGAAAAATGCAGG-ACCAGCACATGCCCGAGCCCAGCATGTGCTACC
820 GCCCCGACGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
**
18237716 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
** ** * *
18237781 AACGAGCACGCGGGCACTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTC
66 AACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* ** * * * ***
18237846 CCCCGT-TGTGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCCATCTGATCTTAGACTGGGAA
131 CCCC-TCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
** * * * * * * * * *
18237910 TGAACTTTGTATTCCTAAGACAACCGATGAAAC-A---AGTGGGC--TGGTGGGCACTACGTCAG
195 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCGGGCACTACGCCGG
* * *
18237969 CCAGAGAGACGGGATGTGCAAGCTGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCA
260 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
18238034 TATTTCTGCATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
325 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
18238099 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTGTGGGGTT
390 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT
* * * *
18238164 CAAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAA
455 CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
18238229 TTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATT
520 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
18238294 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAA
585 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
18238359 TGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
650 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* ** *
18238424 GTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTAGGGACCCCA
715 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* * * * * * *
18238489 ATGCCTCAGGTAAAGTTCTCCGGCGATGCTCCGACAATGGTGCCCCGACGAAGAAAAATACGGCA
779 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
*
18238554 CCAGCACATGCCCGAGCCCAGCATGTGCTGCT
844 CCAGCACATGCCCGAGCCCAGCATGTGCTGCC
*
18238586 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGA
1 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
18238651 AACGAGCATTCGGGTGCCCAGCTGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTC
66 AACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* **
18238716 CCCCTCTGCGTGCTGCCGATGTTGCCACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
131 CCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
* * * * * *
18238781 GAACTCCGTATGTCTAAGCCAATCGACGAAATGAGTGGGCGGGTGGGTGTGCGAGCACTACGCCG
196 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-G-GCGGGCACTACGCCG
*
18238846 GCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
259 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
18238911 ATATTTTTGCATGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTC
324 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * ** *
18238976 ACGTGAAGTTTCATAGCAAGACGACTCTTTTTCTATTTTTCATGATTTTCAAAACTTTTTGGGGT
389 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
* * *
18239041 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAGTCGGTAGACGTGATCCTTGC
454 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
18239106 ATTTTCGTTGGCATGCAAAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
519 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
18239171 TTGAAAAAAGTGTCCCCAATTT-AGACACTTTAATGGCTACTGGCAGAAAACCTATAAAATCTCA
584 TTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
18239235 AATGCTCTTTAAGGGGGTGTGAGTGCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCC
648 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
18239300 AAGTACCCGCACCCATCGGACATCATTTGCGCACACCCCCCCGGCCCTCCCGATCGTCGGAACCC
713 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCC
* * * * *
18239365 CAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG-CCTGACGAAGAAAAATGCAG
777 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
*
18239429 CACCAGCACATGCCCGAGCCCAGAATGTGCTGCC
842 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * *
18239463 GTAACCCTCGGTCCAGTCCGATCTAAGACTGGGAATGAACTCCGTATGCTTAGACTCGGAATGGA
1 GCAA-CC-C--T-C-G---G---T----CT--G---G---TCCG-AT-CTTAGACTGGGAATGAA
* * * *
18239528 CTCCGTATGCCTAAGTTAACCAACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGA
40 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * *
18239593 TGCACAGGCCTGGGATCAG-CTGGGTCCCCCTCTGTGTGCTGCTGATCTTGCTG-TCACAACCCT
105 TGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCT-GCAACCCT
* * * *
18239656 CGGTCTGAT-TCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAATCGACGAAACGAGC
168 CGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* ** * *
18239720 GAGTTG-GTGGACGGGCGGGCAGGCACTACATCAGCCAGAGAGATGGGATGCGCAAGCCGTGGAT
232 G-G--GCG-GG-C-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * **
18239784 TGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
290 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
18239849 TTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAGACGACTCGTTT
355 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
18239914 TAC-ATTTTTCACAATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
420 T-CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* * *
18239978 GTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAACAAATTCAG
484 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
18240043 CTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTT
549 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
18240108 TAATGGCTACTGGCAGCAAACCAGTAAAATCTGAATTGCTCTTTAAGGGGGTGTGAGTTCTCAAG
614 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
18240173 GTTTGATGAGGGATAGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCACACATCATGTGCG
679 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * ** * *
18240238 CACACCCCCCGGCCCCCCCGATCACCGGAACCCCATTGCCACCAATCAAGTTCTCCAACGATGCT
744 CACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* ** * *
18240303 CCGACGATGGTGTCCCGGTGAAGAAAAATGTGGCACCAGCAC--GCCCGAGCCCAACATGTGCTG
809 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
18240366 CC
874 CC
** *
18240368 ATAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
1 GCAA-CC-C--T-C-G---G----T---CT--G---G---TCC-GAT-CTTAGACTGGGAATGAA
* * * * * *
18240433 TTCCTTATGCCTAAGTCAACACAC-AAGACGAGCGTGCGGGCT-CTCAGCCAGCCAGAGGGGTGA
40 CTCCGTATGCCTAAGTCAACCCACGAA-ACGAGCGTGCGGG-TGCTCAGCCGGCCAGAGGGGCGG
* * * * * *** * * * *
18240496 GATGCGCATGCCTGGGATCCGTCGGGTCCCCATCTGCATGCTATTGATCCTGTTGCCGTAACCCT
103 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCT
* * * * *
18240561 CGATCTTGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCGAAGCCACCCGACGAAACTAGC
168 CGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * * * *
18240625 GGGCGGGCAGGCGGGCCGGCACTACGTCGGCCAGAGAGACGGGATGTGCACGCTGTGGATTGATA
232 GGGCGGGC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
18240690 GGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
295 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * * * * * *
18240755 AAATTCATACAATGGTCCCTTAACCCTTCATGTGAAGCTTCATGGCAGGATGACTGGTTTTTTAT
360 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
18240820 TTTTCACGATTTTTGAAACTTTTTTGCGGTTTGGGATTTTTTCAAATTTTTTCGGAAGGAGTTTT
425 TTTTCACGATTTTTGAAAC-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * * * *
18240885 AGCCCCAAACTTGGTGGACATGATCCTTGTATTTTTCTTTGCATGCACAAAAAAATTTAGCTAAA
489 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
** *
18240950 AACTATAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-GAACACTTTAAT
554 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAAT
* * * *
18241014 GGCTACTGGCAGCAAACCAGTAAAATCTGAATTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
618 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
18241079 GATGAGGGATAAGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACATCATGTGTGCACA
683 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * **
18241144 CCCCCCCGGCCCCCCCGATCACCGGAACCCTAATACCGCCAGTCAGGTTCTCCGGTGATGCTCCG
748 -CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* * * * *
18241209 ACGATGGTTCCCCGACGAAGAAAAATGAGGTACCAGCACATGCCTGAGCCCAGCATGTGCTACC
812 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
18241273 GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
1 GCAA-CC-C--TC-G----G----T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAA
* * * *
18241338 CTCCGTATGCCTAAGTCAACACACGGAACGAGCGTGCGGGCTG-TCAGTCGGCCAGAGGGGCGAG
40 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-TGCTCAGCCGGCCAGAGGGGCGGG
* * * ** * ** ** * * * *
18241402 ATGTGCAAGCCTGGCATCAATCGGGTCCTCCTCTATGTGCTATCGATCCTACTGTTGTAACCCTC
104 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTC
* * * * *
18241467 AGCCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCC-ACACAATGAAACGA--
169 GGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CGACGAAACGAGC
* *
18241528 ------GC--GGGC--G--CTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGG
232 GGGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * * *
18241581 GTGGTAGGTGGGTTTAGGCACATCTTCAAATTTTTGCGTGCCAATTCCATTCTTATGGCTTGTAA
297 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * *
18241646 ATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCGTGGCAAGAGGACTCGTTTTCTATTT
362 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* *
18241711 TTCATGATTTTTTAAACTTTTTGCGGTTTC-AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
427 TTCACGATTTTTGAAACTTTTTGCGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * *
18241775 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTACAAAAAAATTAAGCAAAAAA
491 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
18241840 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGC
556 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
18241905 TACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AATGTTTGAT
621 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
18241969 GAGGGATAGGGGGCCGATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCC
686 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * ** **
18242034 CCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATAATGCTCCGGTGA
751 CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA
* * *
18242099 TGGTGCCCCGACAAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTC
816 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * *
18242159 GCAACCCTCGGGCTGGTCTGATCTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCCATGA
1 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * * * * **
18242224 AACAAGCATACGGGCGCTCAGTCGGCCAAAAGGGCGGGATGCGCAAGCCGAGGATCGGCCTAGTC
66 AACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * ** ** ** *
18242289 TCCCTCTGCGTGCTGCCGATCCTATTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTAGGAAT
131 CCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
* *
18242354 GAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCG
196 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG--GGCGGGCACTACGCCG
*
18242419 GCC--AGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
259 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*** * *
18242482 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACCATAGTCCCTTAAGCCTTC
324 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
18242547 ACGTGAAGTTTCAAGGTAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTGGCGGT
389 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
* * * *
18242612 TCGGGATTTTTTAAAATTTTTTC-GAAAGATGTTTT-ACCCCAAACTTGGTAGACGTGATCCCTG
454 TCGAGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
18242675 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTATGACCA
518 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
18242740 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGTAGGAAACCTGTAAAATATCA
583 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
18242805 AATGCTCCTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGCCCAATATAACGGCC
648 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
18242869 AAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGACCACCTCGATCGCCGGAACCCC
713 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
** ** *
18242934 AATGCCATCGGAAAGGTTCTCCGACGATGCTCCGACGATGCTCCGACGATCGTGCCCCAGTC-AA
778 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA---T-----G---GTGCCCC-GACGAA
* ** * * * * * * * *
18242998 GAAAAATGCGACACCAGCATGTGCTGCTGCAACCC-TCGGTCTGGTTCA
831 GAAAAATGCGGCACCAGCACATGC--CCG-AGCCCAGC-ATGTGCTGCC
* *** * ** *
18243046 GTCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 G-C-AACCCTCGGTCTG--GTCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
18243111 CCACGAAACGAGCGTTCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGT
60 CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * * * * *
18243176 CGGGTCCCCCTCTGCGTGTTGTCGATCTTGCTACTGCAACCCTTGATCTGGTCCGATCTTAGACT
125 CGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACT
* * *
18243241 GGGAATGAACTCCGTATGTCTAAGCCAACCGACGAAACGAGCGGGTGGACGGGCGGGCGGGCACT
190 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG-GGGCGGGCACT
* * * * *
18243306 ACGTCGGCTAGAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCAC
253 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
18243371 ATCTTCGTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
318 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
18243436 GCCTTCGCGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTT
383 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* *
18243501 TACGGTTC-AGGA--TTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
448 TGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
18243563 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCTGCTAAAAACTCAAAGTGTACAAGACTTTG
512 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
18243628 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTAATGGTAGGAAACCTGTAAA
577 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * * *
18243693 ATATCAAATGCTCCTTAATGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATA
642 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
18243758 ATGGCTAAGTACCAGCACCCA-CGCACATCATGTGCGCACACCCCCCCGGCCACCTCGATCGTCG
707 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCG
* *
18243822 GAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-AGTGAAGAAA
771 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAA
*
18243886 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT
835 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
18243927 GCAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
1 GCAA-CC-C--TC-GG-----TC------T--G---G---TCCG-AT-CTTAGACTGGGAATGAA
* * * * * *
18243992 CTCCGTATGCCTAAGTCAACCCACGAAACAAACGTTCCGGTGCTCAGCCGACCAGAGGGGTGGGA
40 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
* * * * *
18244057 TGCACAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCAATCTTGCTGCTGCAACCCTCG
105 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTCG
* *
18244122 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGATGAAACGAGCGGG
170 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * *
18244187 CGGGC--GGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATATGGTG
235 CGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
18244250 GTAGGTGGGTTTAGGCACGTCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
300 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
*
18244315 CATA-AAT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTC
365 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
18244378 ACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCC
430 ACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* *
18244443 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCTGCTAAAAACTCA
495 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
18244508 AAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
560 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * * *
18244573 GGCAGCAAACCTGTAAAATCTGAAAAGCTCTTTAA-AGGGTGTGAGTTCTCAAGGTTTCATGAGG
625 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *** * *
18244637 GATAGTGGGCCAATATAAGTTTCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCTCCG
690 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
** * * *
18244702 GCCCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCTGACGATGCTCCGATGATGGT
755 GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
** *
18244767 GCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCGGCATGTGCTGCC
820 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
18244823 GCAACCCTCGGTCCAGTCCGATCTTATATTGGGAATGAACTTCATATGCTTAGCTTGGGAATGAA
1 GCAACCCTCGGT-C--T--GGTC--------CG-AT---C-T--TA-G---A-C-TGGGAATGAA
* ** *
18244888 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGGCGAGA
40 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
* * * ** * * * * **
18244953 TGCGGAAGTCGGGGATCGATCGGGTCCTTCTTTGCGTACTGTCGATCTTACTGCCACAACCCTCG
105 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTCG
* * * * * * *
18245018 GTCCGGTATGATTTTAGACTGGTAATGAACTCTGTATGCCTAAGCCAACCGATGAAATGAGCGGG
170 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * *
18245083 CGGGC--GGGCGGGCACTACACCGGCCAGAGAGATGGGACGCGCAAGCCGTGGATCGATAGGGTG
235 CGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
*
18245146 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
300 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
**
18245211 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAACGCAAGACGACTCGTTTTCTATTTTTC
365 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * * *
18245276 ATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTGAAAATTTTTTTGGAAAGATTTTTGACCCC
430 ACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* ** * *
18245341 AAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGGGCAAAAACATTCAGCAAAAAACTCG
495 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* ** * **
18245406 AAGTGTACAAGATTTTGTGACAATTCAAAAAAAGTGCCCCCATTTCAGACACTTTAATAACTACT
560 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
18245471 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGG
625 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
18245536 GATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
690 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * * *
18245600 GCCCCCCGGGCCCCCGATCACCGAAACCTCAATGCCGTCGGTCAGGTTCTTCGACGATGCTTCGA
755 G----CC---CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
***
18245665 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATTTTCGAGCCCAGCATGTGCTGCC
813 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * *
18245728 GCAACCCTCGGTCCGATCCGATCTTATACTAGGAATGAGCTCCGTATGC
1 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18245777 TTAGAATGGG
Statistics
Matches: 7784, Mismatches: 934, Indels: 452
0.85 0.10 0.05
Matches are distributed among these distances:
859 1 0.00
860 161 0.02
861 4 0.00
862 3 0.00
863 4 0.00
864 2 0.00
865 102 0.01
866 95 0.01
867 9 0.00
868 451 0.06
869 11 0.00
870 295 0.04
871 1 0.00
872 17 0.00
873 282 0.04
874 201 0.03
875 1 0.00
876 12 0.00
877 56 0.01
878 529 0.07
879 221 0.03
880 278 0.04
881 48 0.01
882 7 0.00
883 6 0.00
884 64 0.01
885 18 0.00
886 121 0.02
887 84 0.01
888 247 0.03
889 321 0.04
890 4 0.00
891 69 0.01
892 8 0.00
893 226 0.03
894 188 0.02
895 389 0.05
896 480 0.06
897 331 0.04
898 316 0.04
899 30 0.00
900 4 0.00
901 398 0.05
902 291 0.04
903 267 0.03
904 9 0.00
905 572 0.07
906 74 0.01
907 471 0.06
908 4 0.00
909 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
CCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCGGGCACTACGCCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC
GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAAT
GCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
AGCACATGCCCGAGCCCAGCATGTGCTGCC
Found at i:18239517 original size:26 final size:26
Alignment explanation
Indices: 18239488--18239537 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18239478 GTCCGATCTA
*
18239488 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTCGGAATGAACTCCGTATGCTT
*
18239514 AGACTCGGAATGGACTCCGTATGC
1 AGACTCGGAATGAACTCCGTATGC
18239538 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTCGGAATGAACTCCGTATGCTT
Found at i:18240426 original size:26 final size:26
Alignment explanation
Indices: 18240390--18240442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18240380 CCTGTCTGAT
18240390 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18240416 CTTAGACTGGGAATGAATTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
18240442 C
1 C
18240443 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18241324 original size:26 final size:26
Alignment explanation
Indices: 18241295--18241347 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18241285 CTGATCCGAT
18241295 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18241321 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18241347 C
1 C
18241348 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18242968 original size:11 final size:11
Alignment explanation
Indices: 18242952--18242983 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
18242942 CGGAAAGGTT
18242952 CTCCGACGATG
1 CTCCGACGATG
18242963 CTCCGACGATG
1 CTCCGACGATG
18242974 CTCCGACGAT
1 CTCCGACGAT
18242984 CGTGCCCCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.38, G:0.25, T:0.19
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:18243084 original size:26 final size:26
Alignment explanation
Indices: 18243048--18243100 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18243038 CTGGTTCAGT
*
18243048 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18243074 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18243100 C
1 C
18243101 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18243985 original size:26 final size:26
Alignment explanation
Indices: 18243949--18244001 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18243939 CTGGTCCAAT
*
18243949 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18243975 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18244001 C
1 C
18244002 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18245069 original size:896 final size:897
Alignment explanation
Indices: 18242181--18245904 Score: 5045
Period size: 896 Copynumber: 4.1 Consensus size: 897
18242171 CTGGTCTGAT
* * * * * *
18242181 CTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCATACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * ** * *
18242246 CGGCCAAAAGGGCGGGATGCGCAAGCCGAGGATCGGCCTAGTCTCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * * *
18242311 TATTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
131 TACTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18242376 CCGATGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCGGC--CAGAGACGGGATGCGTAA
196 CCGATGAAACGAGCGGGCGGGC--G--GGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
**
18242439 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * *
18242504 TTTTTATGGCTTGTAAATTCATACCATAGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGTAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGAC
** *
18242569 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTGGCGGTTCGGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
*
18242634 CGAAAGATGTTTT-ACCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAA
452 CGAAAGAT-TTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
18242698 AAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTC
516 AAATTCAGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18242763 AGACACTTTAATGGCTAATGGTAGGAAACCTGTAAAATATCAAATGCTCCTTAAGGGGTGTGAGT
581 AGACACTTTAATGGCTAATGGCAGCAAACCTGTAAAATATCAAATGCTCCTTAAAGGGTGTGAGT
* *
18242828 TCTCGAGGTTTGATGAGGGATTGGGGCCCAATATAACG-GCCAAGTACCAGCACCCATTGCACAT
646 TCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAA-GTGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
18242892 CATGTGCGCACACCCCCCGACCACCTCGATCGCCGGAACCCCAATGCCATCGGA-AAGGTTCTCC
710 CATGTGCGCAAACCCCCCGGCCACCCCGATCACCGGAACCCCAATGCC-GCCGATAAGGTTCTCC
* * *** ** * * *
18242956 GACGATGCTCCGACGA---TGCTCC---GACG-ATCGTGCCCCAGTCAAGAAAAATG--CGA-CA
774 GACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCA--CCAG-CACATGCCCGAGC-
* * *
18243011 CCAGCATGTGCTGCTGCAACCCTCGGTCTGGTTC-AGTCTTAGATTGGGAATGAACTCCGTATG
835 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA-TCTTAGATTGGGAATGAACTCCGTATG
* *
18243074 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
18243139 CGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGTTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * ** * * *
18243204 TGCTACTGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAA
131 TACTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18243269 CCGACGAAACGAGCGGGTGGACGGGCGGGCGGGCACTACGTCGGCTAGAGAGATGGGATGCACAA
196 CCGATGAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
* * *
18243334 GCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCGTATTTCTGCATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *
18243399 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGAC
*
18243464 GACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-AGGA--TTTTAAAATTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTT
* *
18243526 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
451 TCGAAA-GATTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18243591 AAAATTCTGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
18243656 CAGACACTTTAATTGCTAATGGTAGGAAACCTGTAAAATATCAAATGCTCCTTAATGGGGTGTAA
580 CAGACACTTTAATGGCTAATGGCAGCAAACCTGTAAAATATCAAATGCTCCTTAA-AGGGTGTGA
*
18243721 GTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAA-TGGCTAAGTACCAGCACCCA-CGCAC
644 GTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGT-GCCAAGTACCAGCACCCATCGCAC
* * ** *
18243784 ATCATGTGCGCACACCCCCCCGGCCACCTCGATCGTCGGAACCCCAATGCCGCCGGTAAGGTTCT
708 ATCATGTGCGCA-AACCCCCCGGCCACCCCGATCACCGGAACCCCAATGCCGCCGATAAGGTTCT
*
18243849 CCGACGATGCTCCGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
772 CCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
18243914 AGCATGTGCTGCTGCAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATG
837 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
* * * * *
18243975 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTTCCGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * *
18244040 CGACCAGAGGGGTGGGATGCACAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* ** * *
18244105 TGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAA
131 TACTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
18244170 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCA
196 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCG
* *
18244235 TGGATCGATATGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTGCGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
18244300 TATGGCTTGTAAATTCATA-AAT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACT
* *
18244363 CGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAA
391 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAA
*
18244428 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
456 A-GATTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
18244493 TCTGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
520 TCAGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * *
18244558 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAAAGCTCTTTAAAGGGTGTGAGTTCTC
585 ACTTTAATGGCTAATGGCAGCAAACCTGTAAAATATCAAATGCTCCTTAAAGGGTGTGAGTTCTC
* * **
18244623 AAGGTTTCATGAGGGATAGTGGG-CCAATATAAGTTTCAAGTACCAGCACCCATCGCACATCATG
650 GAGGTTTGATGAGGGATAG-GGGCCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
18244687 TGCGCAAACCCTCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCTGACGA
714 TGCGCAAACCCCCCGGCCACCCCGATCACCGGAACCCCAATGCCGCCGATAAGGTTCTCCGACGA
* *
18244752 TGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCGGCATGT
779 TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
18244817 GCTGCCGCAACCCTCGGTCCAGTCCGATCTTATATTGGGAATGAACTTCATATG
844 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
*
18244871 CTTAG-CTTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * ** * * *
18244935 CCGGCCAGAGGGGCGAGATGCGGAAGTCGGGGATCGATCGGGTCCTTCTTTGCGTACTGTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * * *
18245000 TTACTGCCACAACCCTCGGTCCGGTATGATTTTAGACTGGTAATGAACTCTGTATGCCTAAGCCA
130 TTACTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18245065 ACCGATGAAATGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGATGGGACGCGCAAGCC
195 ACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCC
18245130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
18245195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAACGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGAC
* * *
18245260 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTGAAAATTTTTTTGG
390 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCG
* ** *
18245325 AAAGATTTTTGACCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGGGCAAAAACA
454 AAAGATTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * ** *
18245390 TTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACAATTCAAAAAAAGTGCCCCCATTTCAGA
519 TTCAGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
** * * *
18245455 CACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
584 CACTTTAATGGCTAATGGCAGCAAACCTGTAAAATATCAAATGCTCCTTAAA-GGGTGTGAGTTC
*
18245520 TCGAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
648 TCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * *
18245584 GTGCGCACACCCCCCGGCCCCCCGGGCCCCCGATCACCGAAACCTCAATGCCGTCGGTCAGGTTC
713 GTGCGCAAACCCCCCGG----CC---ACCCCGATCACCGGAACCCCAATGCCGCCGATAAGGTTC
* * ** ***
18245649 TTCGACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATTTTCGAGCC
771 TCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * *
18245714 CAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTATACTAGGAATGAGCTCCGTATG
836 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
* * * *
18245776 CTTAGAATGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
18245841 CGGACAGAGGGGCTGGACGCGCAAG-CTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
18245905 CTGATCCCAC
Statistics
Matches: 2534, Mismatches: 252, Indels: 78
0.88 0.09 0.03
Matches are distributed among these distances:
893 217 0.09
894 182 0.07
895 382 0.15
896 525 0.21
897 341 0.13
898 313 0.12
899 46 0.02
900 3 0.00
901 260 0.10
902 10 0.00
904 1 0.00
905 254 0.10
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
TACTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAA
AGATTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTAATGGCAGCAAACCTGTAAAATATCAAATGCTCCTTAAAGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCAAACCCCCCGGCCACCCCGATCACCGGAACCCCAATGCCGCCGATAAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
Found at i:18246370 original size:26 final size:26
Alignment explanation
Indices: 18246341--18246391 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18246331 CTGGTCCGAT
18246341 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
18246367 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18246392 GCCTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:18248872 original size:26 final size:26
Alignment explanation
Indices: 18248843--18248893 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18248833 GTCCGATCTT
18248843 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
18248869 AGACTGGGAATGAACTCCGTATGCT
1 AGACTGGGAATGAACTCCGTATGCT
18248894 TAAGTCAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:18249125 original size:899 final size:898
Alignment explanation
Indices: 18247209--18253372 Score: 7933
Period size: 894 Copynumber: 6.9 Consensus size: 898
18247199 GCCCAGCATG
* * * *
18247209 TGCTGCCACAGCCCTCAGTTCGGT-TCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCA
1 TGCTGCCACAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
18247273 ACCGAC-TAA--A-C--GA--GCGGGC--G--GGCACTTCGCCGACTAGAAAGATGGGATGCACA
65 ACCGACGAAACGAGCGGGAGGGCGGGCGGGCAGGCACTACGCCAACCAGAGAGACGGGATGCGCA
* * * **
18247326 AGCCGTGGATTGATAGGGTGGTTGGTGGGTTTCGGCACATCTTCATATTTCTATGTGCC-ATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
18247390 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * * *
18247455 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTGAAATTTTG
260 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
18247520 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
325 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
18247585 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTCAAAAAAGTGTCCCCATTT
390 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18247650 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTCA
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
18247715 GTTTTCGAGGTTTGATCAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCAACCATCCCACA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
18247780 TCATGTGCGCACACCCCCGG-CCCCCTGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
585 TCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG-C---CAGGTTCTCCG
* *
18247844 GCGACGCTCCGGCGATGGTGCCCCGACGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
646 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * *
18247909 ATATGCTGCCGCAACCCTCGGTCTGATACGATCTTAGCCTGGGAATGAACTCCGTATGCTTAGAC
711 ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
18247974 TGGGAATGAACTCCGTGTGCCTAAGTCAAACCACGAAACGAGCGTACGGGCGCTCAGCCGGGCAG
776 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAG
* * * *
18248039 AGGGGTGGGATGCGCAAGCCGGAGATCGATC-GGGTCCCCCTCTACGTGCTGTCGATCC
841 AGGGGCGGGATGCGCAAGCCGGGGATCG-TCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * **
18248097 TGCTAG-CACAACCCACAATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCT-GCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *** * * ** **
18248161 ACCGACGAAAGGAGCGGGCGGGCGGACGAATAGGTACTATGCCGGCCAGAGAGACAAGATGCGCA
65 ACCGACGAAACGAGCGGGAGGGCGGGCGGGCAGGCACTACGCCAACCAGAGAGACGGGATGCGCA
* * *
18248226 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATAATTCTACATTCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
18248291 ATTTTTATTGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * **
18248356 TGACCCGTTTTTTATTTTTTATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
** ** * *
18248421 TTGGAAGGAGTTTTGGTTCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTTGGCATGTACAA
325 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAA
* * *
18248486 AAAAATTCAGCCAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18248551 TCAAACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
18248616 ATTTCTCGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTAGCAGCACCCATCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * **
18248681 ATCATGTGCGCACACCCCCGCCCCCCCCGGATCGTCGGAACCTAAATGCCACC-GGTTCTCTAGC
584 ATCATGTGCGCACACCCCCGGCCCCCCC-GATCGTCGGAACCCCAATGCCGCCAGGTTCTCCGGC
* * *
18248745 GATGCTCCGGCGATGGTGCCCTGACGAAGAAACATGCGGCACCAGCACATGCTCGAGCCCAGCAT
648 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
18248810 GTACTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTG
713 GTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
18248875 GGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGATCAGCCGACCAAAA
778 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAG
* *
18248940 GGGCGGGATGCGCAAGTCGGGGATCGTCTGGGTCCCCCTCTGCATGCTGCCGATCC
843 GGGCGGGATGCGCAAGCCGGGGATCGTCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * *
18248996 TACTGCCACAACCCTCAGTTTGGTCTGATCATATACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18249061 TCGACGGAACGAGCGGGAGGGCGGGCGGGCAGGCACTACGTCAACCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGAGGGCGGGCGGGCAGGCACTACGCCAACCAGAGAGACGGGATGCGCAA
* *
18249126 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
18249191 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18249256 GACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTGCAGTTCCGGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
** * * * * * *
18249321 TGGAAAGAGTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGCCATGCATAAAA
326 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * * *
18249386 GAATTCATCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18249451 AGACACTTTAATTGCTACTGGCAGCAAACCGGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
456 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* **
18249516 TTCTAGAGGTTTGATGAGGGATAGGGAACCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
521 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18249581 CATGTGCGCACACCCCC--CCCGATGCACCCAATCGTCGGAACCCCAATGTCGTC-GG---T-C-
586 CATGTGCGCACACCCCCGGCCC----C-CCCGATCGTCGGAACCCCAATGCCGCCAGGTTCTCCG
** * * * **
18249638 AAG-TTCTCCGACGATGCTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
646 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
18249702 ATATGCTGTCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
711 ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
**
18249767 TGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAG
776 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAG
* * *
18249832 AGGGGCGGGATGCGCAAGCCAGGGATCGGT-TGGGTCCCCCTCTACGTGCTGTCGATCC
841 AGGGGCGGGATGCGCAAGCCGGGGATC-GTCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
18249890 TGCTGCCCCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18249955 CCGATGAAACGAGC--GA--ACGGGC--G--GGCACTATGCCGACGAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGAGGGCGGGCGGGCAGGCACTACGCCAACCAGAGAGACGGGATGCGCAA
* ** *
18250012 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAGTTCTTCATATTTCTACTTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * * *
18250077 TTTTTATGGCTTGTAAATTGATATAATGGTCCCTGAAGCCTTCACATGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18250142 GACTCGTTTTCTATTTTTCATGATTTTTGGAACTTTTTGCTGTTCGAGATTTTTTAAAACTTTTT
261 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * *
18250207 C-GAAAGGATTTTTGGCCCCAAACGTGGTAGACATGATCCTTGTATTTTTGTTGGCGA-GCACAA
326 CAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC-ATGCACAA
* *
18250270 AAAAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18250335 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18250400 AGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18250465 AACATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTC
584 ATCATGTGCGCACA-CCCCCGGCCCCCCCGATCGTCGGAACCCCAA--T-GCC-GCCAGGTTCTC
* * *
18250530 CGGAGATGCTCCGGCAATGGTG-CCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA
644 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
18250594 GAATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTAAGACTGGGAATGAACTCCGTATGCTTAG
709 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * *
18250659 ACTCGGAATGGACTCCGTATGCCTAAGTTAACCAACAAAACGAGCGTGCGGGTGCTCAGCCGGCC
774 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCC
* * * * * * *
18250724 AGAGGGGCAGGATGCACAGGCCTGGGATCGGCTGGGTCCCCCTCTGTGTGCTGCTGAT-C
839 AGAGGGGCGGGATGCGCAAGCCGGGGATCGTCTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
18250783 TAGCTGTCACAACCCTCGGTCTGAT-TCAATCTTACACTGGGAATGAACTCCGTACGCCTAAGCC
1 T-GCTGCCACAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * *
18250847 AATCGACGAAACGAGCGAACGG-GCGGACGGGCGGGCAGGCACTACATCAGCCAGAGAGATGGGA
64 AACCGACGAAACGAGCG---GGAG-GG-CGGGCGGGCAGGCACTACGCCAACCAGAGAGACGGGA
* * * *
18250911 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCGTTCC
124 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCC
**
18250976 AATGCCATTTTTATGGCTTGTAAATTGGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
189 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * ** * * * *
18251041 CCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCGATTCGGGCTTTTTCAAA
254 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
* * * *
18251106 ATTTTTTCAGAAGGATTTTTGGACCCAAACTTGGTAGACATGATCCTTGAATTTTTTTTTGGCAT
319 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCAT
*
18251171 GCACAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTC
383 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * * * *
18251235 CCCAGTTAAGACACTTTAATGGCCACTGGTAGAAAACCTGTAAAATCTGAAATGCTCTTTAAGGG
448 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
18251300 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
513 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * ** *
18251365 TCGCACATCATTTGTGCACACCCCCGACCCCCCCGATCGTCGAAACTGCAAAGCCGTCGGTCAGG
578 TCGCACATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG-C---CAGG
* * **
18251430 TTCTTCGGCGATGCTCC-GCAATGGTGCCCCGGTGAAGAAAAATG-GGCACCAGCACATGCCCGA
639 TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * *
18251493 GCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGAGAATGAACTCTGCATG
704 GCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18251558 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGT
769 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * *
18251623 CGGCCTGAAGGGTGGGATGCGCAAGCTGGGGATCGAT-TGGGTCCCCCTCTGCGTGTTGCTGATC
834 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCTGGGTCCCCCTCTGCGTGCTGCCGATC
18251687 C
898 C
* * **
18251688 TGCTACCGCAACCCTTCA-TCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCACAACCC-TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * ** *
18251752 ACCGAGGAAATGAGGGAGCGAACGGGCGGGCGGGCGGGCGCGCATTACGCGGACCAGAGAAACGG
65 ACCGACGAAACGAGCG-G-G-A-GGGCGGGCGGGC---AG-GCACTACGCCAACCAGAGAGACGG
* ***
18251817 GTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
122 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
18251882 CCAAAT-CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
187 CC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * * * *
18251946 ATGGCTAGACGACTTGTTTTCTATTTTTCTTGATTTTTAAAACTTTTTGCGTTTCAGGATTTTCT
251 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT
* * * * * *
18252011 CAAATTTTTTCCGATGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCCTGTATTTTTTTTGGT
316 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
*
18252076 ATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-CAGTTTGAAAAAAGT
381 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGT
* *
18252140 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCCCAAATGCTCTTTAA
445 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
18252205 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
510 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
*
18252270 CCATCGCACATCGTGTGCGCACACCCCCCGGCCCCCCCGATCGAT-GGAACCCCAATGCCGCCGG
575 CCATCGCACATCATGTGCGCACA-CCCCCGGCCCCCCCGATCG-TCGGAACCCCAATGCCGCC--
* * ** *
18252334 TTAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATATGGCCCCAGCACATG
636 --AGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * * *
18252399 CCCGAGCCCATCATGTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGAGAATGAACTCT
699 CCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
*
18252464 GTATGCTTAGACTGGGAATGAACTCC-TACGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGC
764 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGC
* * * * * * * * *
18252528 TCAGTCGGCCAAAGGGGTGGGATGCGTAAGCTGGGGATTGACCGGGTCCCCCTCTTGCATGCTGC
829 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCTGGGTCCCCCTC-TGCGTGCTGC
*
18252593 CGATCT
893 CGATCC
** *
18252599 TGCTATCACAACCCTC-GATTCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
1 TGCTGCCACAACCCTCAG-TCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * ** * *
18252662 AACTGACAAAACGAGCGGGCGGACGGGCGGGTGGGTACTACGCCAGCCAGAGAGACGGGATGCGC
64 AACCGACGAAACGAGCGGGAGGGCGGGCGGGCAGGCACTACGCCAACCAGAGAGACGGGATGCGC
* *
18252727 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTATGA-GCCAATG
129 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATG
* * * **
18252791 CCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCTTTCACATGAAGTTTCATCACAA
193 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** * *
18252856 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTGAAAATTG
258 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
*
18252921 TTTCAGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTT-GCATGCAC
323 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTTGGCATGCAC
* *
18252985 AAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCA
387 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
18253050 TTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGGTG
452 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18253114 TGAGTTCTTGAGATTTGATGAGGGATAGGGGGCCAACATAAGGGCTAAGTACCAGCACCCATCGC
517 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
18253179 ACATCATGTGCGCACATCCCCACGGCCCCCCCGATCGCCGGAACCCCAACGCCGCCTGTGAGGTT
582 ACATCATGTGCGCACA-CCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC----AGGTT
* * * * * *
18253244 CTCTGGTGATGCTCCGGCGATGGTACCCCCATGAAGAAAAAT-CTGGCACCAGCACATGCCCTAG
641 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC-GGCACCAGCACATGCCCGAG
* * ** * *
18253308 CCCAGTATGTGCTACTATAACCCTCGGTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATGC
705 CCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18253373 CTAAGCCAAC
Statistics
Matches: 4598, Mismatches: 577, Indels: 187
0.86 0.11 0.03
Matches are distributed among these distances:
884 19 0.00
885 2 0.00
886 453 0.10
887 8 0.00
888 62 0.01
889 8 0.00
890 5 0.00
891 1 0.00
892 4 0.00
893 5 0.00
894 554 0.12
895 15 0.00
896 8 0.00
897 1 0.00
898 220 0.05
899 552 0.12
900 96 0.02
901 165 0.04
902 312 0.07
903 515 0.11
904 285 0.06
905 69 0.02
906 428 0.09
907 57 0.01
908 420 0.09
909 52 0.01
910 107 0.02
911 175 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGAGGGCGGGCGGGCAGGCACTACGCCAACCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGGTTCTCCGGCGAT
GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGTCTGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:18249770 original size:26 final size:26
Alignment explanation
Indices: 18249734--18249786 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18249724 CCGGTCCGAT
18249734 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
18249760 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18249786 C
1 C
18249787 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18250660 original size:26 final size:26
Alignment explanation
Indices: 18250631--18250680 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18250621 GTCCGATCTA
*
18250631 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTCGGAATGAACTCCGTATGCTT
*
18250657 AGACTCGGAATGGACTCCGTATGC
1 AGACTCGGAATGAACTCCGTATGC
18250681 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTCGGAATGAACTCCGTATGCTT
Found at i:18251584 original size:26 final size:26
Alignment explanation
Indices: 18251532--18251584 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18251522 CTGGTCCAAT
*
18251532 CTTAGACTGAGAATGAACTCTGCATG
1 CTTAGACTGAGAATGAACTCCGCATG
* *
18251558 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGCATG
18251584 C
1 C
18251585 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGCATG
Found at i:18252962 original size:903 final size:902
Alignment explanation
Indices: 18247209--18253372 Score: 7998
Period size: 899 Copynumber: 6.9 Consensus size: 902
18247199 GCCCAGCATG
* * * *
18247209 TGCTGCCACAGCCCTCAGTTCGGTTCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTACCACAACCCTCA-TTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
18247274 CCGACTAAACGA-------G-CGGGC--G--GGCACTTCGCC-GACTAGAAAGATGGGATGCACA
65 CCGACAAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCAG-CCAGAGAGACGGGATGCGCA
* * *
18247326 AGCCGTGGATTGATAGGGTGGTTGGTGGGTTTCGGCACATCTTCATATTTCTATGTGCC-ATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
*
18247390 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * * *
18247455 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTGAAATTTTG
259 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
18247520 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
324 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
18247585 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTCAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18247650 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTCA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
18247715 GTTTTCGAGGTTTGATCAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCAACCATCCCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
18247780 TCATGTGCGCACA-CCCCCGG-CCCCCTGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
584 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
18247843 GGCGACGCTCCGGCGATGGTGCCCCGACGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
649 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * *
18247908 CATATGCTGCCGCAACCCTCGGTCTGATACGATCTTAGCCTGGGAATGAACTCCGTATGCTTAGA
714 CATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
18247973 CTGGGAATGAACTCCGTGTGCCTAAGTCAAACCACGAAACGAGCGTACGGGCGCTCAGCCGGGCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCA
* * * * * *
18248038 GAGGGGTGGGATGCGCAAGCCGGAGATCGA-TCGGGTCCCCCTCTACGTGCTGTCGATCC
844 AAGGGGCGGGATGCGCAAGCTGGGGATCGACT-GGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
18248097 TGCTAGCACAACCCACAATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCACAACCCTCATTC-GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *** * * * **
18248162 CCGACGAAAGGAGCGGGCGGGCGGACGAATAGGTACTATGCCGGCCAGAGAGACAAGATGCGCAA
65 CCGACAAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
* * ** *
18248227 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATAATTCTACATTCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
* * *
18248292 TTTTTATTGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * **
18248357 GACCCGTTTTTTATTTTTTATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
** ** * *
18248422 TGGAAGGAGTTTTGGTTCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTTGGCATGTACAAA
325 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAA
* * *
18248487 AAAATTCAGCCAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18248552 CAAACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18248617 TTTCTCGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTAGCAGCACCCATCGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** *
18248682 TCATGTGCGCACA-CCCCCGCCCCCCCCGGATCGTCGGAACCTAAATGCC-AC---C-GGTTCTC
584 TCATGTGCGCACACCCCCCGGCCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * * *
18248741 TAGCGATGCTCCGGCGATGGTGCCCTGACGAAGAAACATGCGGCACCAGCACATGCTCGAGCCCA
648 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
18248806 GCATGTACTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTCAG
713 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
18248871 ACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGATCAGCCGACC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCC
* * *
18248936 AAAAGGGCGGGATGCGCAAG-TCGGGGATCGTCTGGGTCCCCCTCTGCATGCTGCCGATCC
843 AAAGGGGCGGGATGCGCAAGCT-GGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
18248996 TACTGCCACAACCCTCAGTTTGG-TCTGATCATATACTGGGAATGAACTCCATATGCCTAAGCCA
1 TGCTACCACAACCCTCA-TTCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * *
18249060 ATCGACGGAACGAGCGGGAGGGCGGGCGGGCAGGCACTACGTCAACCAGAGAGACGGGATGCGCA
64 ACCGACAAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCAGCCAGAGAGACGGGATGCGCA
* * **
18249125 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACATGCCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
18249190 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
18249255 TGACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTGCAGTTCCGGATTTTTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
** * * * * * *
18249320 TTGGAAAGAGTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGCCATGCATAAA
324 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * * *
18249385 AGAATTCATCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18249450 CAGACACTTTAATTGCTACTGGCAGCAAACCGGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* **
18249515 GTTCTAGAGGTTTGATGAGGGATAGGGAACCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*** * * * * *
18249580 TCATGTGCGCACACCCCCCCCGATGCACCCAATCGTCGGAACCCCAATGTCGTCGGTCAAGTTCT
584 TCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* **
18249645 -C--CGA--------CGATGCTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
647 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
18249699 AGCATATGCTGTCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTA
712 AGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
**
18249764 GACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGC
* ** ** * *
18249829 CAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTTGGGTCCCCCTCTACGTGCTGTCGATCC
842 CAAAGGGGCGGGATGCGCAAGCTGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
18249890 TGCTGCCCCAACCCTCAATCCGG-TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
1 TGCTACCACAACCCTC-ATTCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
18249954 ACCGATGAAACGA----GCGAACGGGC--G--GGCACTATGCC-GACGAGAGAGACGGGATGCGC
64 ACCGACAAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCAG-CCAGAGAGACGGGATGCGC
* **
18250010 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAGTTCTTCATATTTCTACT-TGCCAATG
128 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-TGTGCCAATG
* * * *
18250074 CCATTTTTATGGCTTGTAAATTGATATAATGGTCCCTGAAGCCTTCACATGAAGTTTCATGGCAA
192 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
18250139 GACGACTCGTTTTCTATTTTTCATGATTTTTGGAACTTTTTGCTGTTCGAGATTTTTTAAAACTT
257 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* * * *
18250204 TTTC-GAAAGGATTTTTGGCCCCAAACGTGGTAGACATGATCCTTGTATTTTTGTTGGCGA-GCA
322 TTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC-ATGCA
* *
18250267 CAAAAAAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
385 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
18250332 ATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
450 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
18250397 GTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
515 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
18250462 CACAACATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTT
580 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
18250527 CTCCGGAGATGCTCCGGCAATGGTG-CCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGC
645 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
18250591 CCAGAATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTAAGACTGGGAATGAACTCCGTATGCT
710 CCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * * *
18250656 TAGACTCGGAATGGACTCCGTATGCCTAAGTTAACCAACAAAACGAGCGTGCGGGTGCTCAGCCG
775 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
* * * * * * *
18250721 GCCAGAGGGGCAGGATGCACAGGCCT-GGGATCGGCTGGGTCCCCCTCTGTGTGCTGCTGAT-C
840 GCCAAAGGGGCGGGATGCGCAAG-CTGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
** ** * * * *
18250783 TAGCTGTCACAACCCTCGGTCTGATTCAATCTTACACTGGGAATGAACTCCGTACGCCTAAGCCA
1 T-GCTACCACAACCCTCATTC-GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** *
18250848 ATCGACGAAACGAGCGAACGGGCGGACGGGCGGGCAGGCACTACATCAGCCAGAGAGATGGGATG
64 ACCGAC-AAA--A-CGAGCGGGCGGACGGGCGGGCAGGCACTACGCCAGCCAGAGAGACGGGATG
* ** *
18250913 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCGTTCCAA
125 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAA
** *
18250978 TGCCATTTTTATGGCTTGTAAATTGGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCC
190 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** * * * *
18251043 AAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCGATTCGGGCTTTTTCAAAAT
255 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
* * * *
18251108 TTTTTCAGAAGGATTTTTGGACCCAAACTTGGTAGACATGATCCTTGAATTTTTTTTTGGCATGC
320 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGC
*
18251173 ACAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCC
384 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * * * *
18251237 CAGTTAAGACACTTTAATGGCCACTGGTAGAAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGG
449 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
18251302 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
514 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * ** * *
18251367 GCACATCATTTGTGCACA-CCCCCGACCCCCCCGATCGTCGAAACTGCAAAGCCGTCGGTCAGGT
579 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * **
18251431 TCTTCGGCGATGCTCC-GCAATGGTGCCCCGGTGAAGAAAAATG-GGCACCAGCACATGCCCGAG
644 TCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * *
18251494 CCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGAGAATGAACTCTGCATGC
709 CCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18251559 TTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGTC
774 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
* * * * *
18251624 GGCCTGAA-GGGTGGGATGCGCAAGCTGGGGATCGATTGGGTCCCCCTCTGCGTGTTGCTGATCC
839 GGCC-AAAGGGGCGGGATGCGCAAGCTGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
* ***
18251688 TGCTACCGCAACCCTTCA-TCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCACAACCC-TCATTCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18251752 ACCGAGGAAATGAGGGAGCGAACGGGCGGGCGGGCGGGC-GCGCATTACG-CGGACCAGAGAAAC
64 ACCGA--CAA--A---A-CGAGCGGGCGGACGGGCGGGCAG-GCACTACGCCAG-CCAGAGAGAC
* *
18251815 GGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTG
119 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG
18251880 TGCCAAAT-CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
184 TGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * * *
18251944 TCATGGCTAGACGACTTGTTTTCTATTTTTCTTGATTTTTAAAACTTTTTGCGTTTCAGGATTTT
248 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
* * * * * *
18252009 CTCAAATTTTTTCCGATGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCCTGTATTTTTTTTG
313 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* *
18252074 GTATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-CAGTTTGAAAAAA
378 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAA
* *
18252138 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCCCAAATGCTCTTT
442 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
18252203 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
507 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
18252268 ACCCATCGCACATCGTGTGCGCACACCCCCCGGCCCCCCCGATCGAT-GGAACCCCAATGCCGCC
572 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG-TCGGAACCCCAATGCCGCC
* * * ** *
18252332 GGTTAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATATGGCCCCAGCACA
636 GGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * *
18252397 TGCCCGAGCCCATCATGTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGAGAATGAACT
701 TGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* *
18252462 CTGTATGCTTAGACTGGGAATGAACTCC-TACGCCTAAGTCAACCCACGAAACGAGCGTACGGGC
766 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC
* * * * * *
18252526 GCTCAGTCGGCCAAAGGGGTGGGATGCGTAAGCTGGGGATTGACCGGGTCCCCCTCTTGCATGCT
831 GCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCTGGGGATCGACTGGGTCCCCCTC-TGCGTGCT
*
18252591 GCCGATCT
895 GCCGATCC
*
18252599 TGCTATCACAACCCTCGATTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCACAACCCTC-ATTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** *
18252664 CTGACAAAACGAGCGGGCGGACGGGCGGGTGGGTACTACGCCAGCCAGAGAGACGGGATGCGCAA
65 CCGACAAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
* *
18252729 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTATGAGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
* * * **
18252794 TTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCTTTCACATGAAGTTTCATCACAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * *
18252859 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTGAAAATTGTTT
260 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
*
18252924 CAGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTT-GCATGCACAAA
325 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTTGGCATGCACAAA
* *
18252988 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18253053 CAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
18253117 GTTCTTGAGATTTGATGAGGGATAGGGGGCCAACATAAGGGCTAAGTACCAGCACCCATCGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
18253182 TCATGTGCGCACATCCCCACGGCCCCCCCGATCGCCGGAACCCCAACGCCGCCTGTGAGGTTCTC
584 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
18253247 TGGTGATGCTCCGGCGATGGTACCCCCATGAAGAAAAAT-CTGGCACCAGCACATGCCCTAGCCC
648 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCCC
* * ** * *
18253311 AGTATGTGCTACTATAACCCTCGGTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATGC
712 AGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18253373 CTAAGCCAAC
Statistics
Matches: 4604, Mismatches: 572, Indels: 185
0.86 0.11 0.03
Matches are distributed among these distances:
884 43 0.01
885 2 0.00
886 450 0.10
887 5 0.00
888 64 0.01
890 7 0.00
893 3 0.00
894 530 0.12
895 13 0.00
896 4 0.00
897 1 0.00
898 216 0.05
899 546 0.12
900 93 0.02
901 173 0.04
902 311 0.07
903 542 0.12
904 267 0.06
905 80 0.02
906 426 0.09
907 52 0.01
908 442 0.10
909 59 0.01
910 105 0.02
911 166 0.04
912 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
TGCTACCACAACCCTCATTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACAAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAAA
GGGGCGGGATGCGCAAGCTGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:18254066 original size:710 final size:710
Alignment explanation
Indices: 18252608--18254100 Score: 2174
Period size: 710 Copynumber: 2.1 Consensus size: 710
18252598 TTGCTATCAC
* * * * * *
18252608 AACCCTCGATTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
18252673 CGAGCGGGCGGACGGGCGGGTGGGTACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
66 CAAGCGGGCGGACAGGCGGGCGAGCACTA---CAGCC----AGACGGGATGCGCAAGCCGTGGAT
*
18252738 CGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTATGAGCCAATGCCATTTTTATGG
124 CGATAGGGTGGAAGGTGGGTTTAGCCACATCTTCATATTTCTAT-AGCCAATGCCATTTTTATGG
*
18252803 CTTGAAAATTCATACAATGGTCCCTTAAGCTTTCACATGAAGTTTCATCACAAGACGACTCGTTT
188 CTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATCACAAGACGACTCGTTT
* *
18252868 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTGAAAATTGTTTCAGAAGGAG
253 TCTATTTTTCACGATTTTTGAAAATTTTTGCAGTTCAAGATTTTTGAAAATTGTTTCAGAAGGAG
* * *
18252933 TTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTTGCATGCACAAAAAAAATCAGC
318 TTTTGGCCCCAAACCTGGTAGACGGGATCCTTGAATTTTTATTTGCATGCACAAAAAAAATCAGC
*
18252998 TAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
383 TAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTT
* * *
18253063 AATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGTGTGAGTTCTTGAGAT
448 AATGACTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGAT
* *
18253128 TTGATGAGGGATAGGGGGCCAACATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCA
513 TTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCA
* * * *
18253193 CATCCCCACGGCCCCCCCGATCGCCGGAACCCCAACGCCGCCTGTGAGGTTCTCTGGTGATGCTC
578 CATCCCCACGGCCCCCCCGATCGCCGGAACCCCAACGCCGCCGGTCAGGTTCTCCGGCGATGCTC
*
18253258 CGGCGATGGTACCCCCATGAAGAAAAATCTGGCACCAGCACATGCCCTAGCCCAGTATGTGCTAC
643 CGGCGATGGTACCCCCATGAAGAAAAATCTGGCACCAGCACATGCCCTAGCCCAGCATGTGCTAC
18253323 TAT
708 TAT
** *
18253326 AACCCTCGGTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
18253391 CAAGCGGGCGGGCAGGCGGGCGAGCACTA-TGCC-GACGGGATGCGCAAGCCGTGGATCGATAGG
66 CAAGCGGGCGGACAGGCGGGCGAGCACTACAGCCAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
18253454 GTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT-GCCAATGTCATTTTTATGGCTTGTA
131 GTGGAAGGTGGGTTTAGCCACATCTTCATATTTCT--ATAGCCAATGCCATTTTTATGGCTTGAA
*
18253518 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGC-CAAGACGACTCGTTTTCTAT
194 AATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCAT-CACAAGACGACTCGTTTTCTAT
* * * *
18253582 TTTTCACGATTTTTGAAAATTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTG
258 TTTTCACGATTTTTGAAAATTTTTGCAGTTCAAGATTTTTGAAAATTGTTTCAGAAGGAGTTTTG
*
18253647 GCCCCAAA-CTGGGTAGACGGGGTCCTTGAATTTTTATTTGGCATGCACAAAAAAAATCAGCTAA
323 GCCCCAAACCT-GGTAGACGGGATCCTTGAATTTTTATTT-GCATGCACAAAAAAAATCAGCTAA
* ** *
18253711 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTTATTTCAAATACTTTAAT
386 AAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
* *
18253776 GACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
451 GACTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGATTT
* * * *
18253841 GATGAGGGTTAGGGGGCCAATATAAGGGCCCAGTACCACCACTCATCGCACATCATGTGCGCACA
515 GATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACA
* * * * *
18253906 -CCCCCCGGCCTCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG
580 TCCCCACGGCCCCCCCGATCGCCGGAACCCCAACGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG
* ** * * *
18253970 GCGATGGTGCCCCGGTGAAGAACAATGC-GGCACCAGCACATG-CCTGAGCCCAGCATTTGCTGC
645 GCGATGGTACCCCCATGAAGAAAAAT-CTGGCACCAGCACATGCCCT-AGCCCAGCATGTGCTAC
*
18254033 TGT
708 TAT
* * *
18254036 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
18254101 TGAGCGTCCG
Statistics
Matches: 698, Mismatches: 69, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
708 2 0.00
709 240 0.34
710 290 0.42
711 82 0.12
714 3 0.00
718 81 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (710 bp):
AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CAAGCGGGCGGACAGGCGGGCGAGCACTACAGCCAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGAAGGTGGGTTTAGCCACATCTTCATATTTCTATAGCCAATGCCATTTTTATGGCTTGAAAA
TTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATCACAAGACGACTCGTTTTCTATTTT
TCACGATTTTTGAAAATTTTTGCAGTTCAAGATTTTTGAAAATTGTTTCAGAAGGAGTTTTGGCC
CCAAACCTGGTAGACGGGATCCTTGAATTTTTATTTGCATGCACAAAAAAAATCAGCTAAAAACT
CGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGACTA
CTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGATTTGATGAG
GGATAGGGGGCCAACATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACATCCCCA
CGGCCCCCCCGATCGCCGGAACCCCAACGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
GTACCCCCATGAAGAAAAATCTGGCACCAGCACATGCCCTAGCCCAGCATGTGCTACTAT
Found at i:18256790 original size:719 final size:716
Alignment explanation
Indices: 18254186--18257851 Score: 4614
Period size: 719 Copynumber: 5.1 Consensus size: 716
18254176 CTGCCGATCC
* * * * * *
18254186 TGCTGCCACAATCCTCAGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAA
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * * * * * *
18254251 CCGACAAAACGAGCGGGTAGGCGTGCGCGTGGGTAGTACGCCGGCTAGAGAGACAGGATGCGCAA
66 CCGACAAAA-GAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
18254316 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGTCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
18254381 TTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCGCGTGAAGTTTCATGCCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * **
18254446 GA-TCGTTTTCTATTTTTCACAATTTTCGAAAA-TTTTTGCGGTTCAAGATTTTTTAAAATTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTC-AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
18254509 TTGGAAGGATTTTTGGCCCCAAACTGGGTAGACGTGATCCTTGAATTTTTTTTGGCATGCACAAA
324 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18254574 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCTAATT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTT
* *
18254639 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCCTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18254704 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCA-CCATCGCACA
519 GTTC-TCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*** ** * *
18254768 TCATGTGCGCACACCCCCCTCGGCCCCCCCCGATCGTTGGAACCTTAATGCCGCCAGTCAGGTTC
583 TCATGTGCGCACA-CCCCC-CGG-CCCCCCCGATCACCGGAACCCCAATGTCGCCGGTCAGGTTC
** * * *
18254833 TCCGGTGATGCTCCGGCGATGGTGCCCCGGCAAAGCAAAATGCAGCACCAGCACATGCCCGAGCC
645 TCCGACGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* *
18254898 CAGTATC
710 CAGCATG
* * * * *
18254905 TACTGTCACAACCCTCGGTCCAGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
18254970 CCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTAC-ACTAGCCAGAGAGACGGGATGCACA
66 CCGAC-AAAAGAACGGGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCA
* * * *
18255034 AGTCATGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCGTT-ATATTTCTGCATGCCAGTGC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-TTCATATTTCTGCATGCCAATGC
18255098 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
193 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18255163 ACGACTCGTTTTCTAATTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
258 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
18255228 TTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTATTGGCATGCACAA
323 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
18255293 AAAAATTCAGTTAAAAACTTGAAGTGTACAAGATTTTGTGACCTTTTGAAAAATGTGTCCCCATT
388 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATT
* * * *
18255358 TCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTGAGGGGGTGGG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* **
18255423 AGTTCTCTAGGTTTGATGGGGGATAGGAAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
518 AGTTCTC-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
18255488 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCGCAAAGCCGCAGGTCAGGTTCTC
582 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTCGCCGGTCAGGTTCTC
* * * ** * *
18255553 CGGCGATGCTCAGGTGATGGCACCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCTA
647 CGACGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
18255618 GCATG
712 GCATG
** ** * *
18255623 TGCTGCCGTAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGGACTCCGTATGACTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * *
18255688 TC-A-ACGA-AACGAGCGGGCGGGCGGGCTGGCACTACGTCGGCCAGAGAGATGAGATGCGCAAG
66 CCGACAAAAGAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* *
18255750 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTTCATGCCAATGCCAT
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
18255815 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGTCG
196 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
18255880 ACTCATTTTTTATTTTTCATGATTTTCCAAACTTTTTATC-GTTCGGGATTTTTTAAAATTTTTT
261 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTA-CGGTTCGGGATTTTTTAAAATTTTTT
** * * * *
18255944 CGGCAGGCA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAACTTTTGTTGTCATGCGCAAA
325 CGAAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
* * * **
18256008 AAAAAATCAGCTAAATACTCGAAGTGTAAAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATT
388 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATT
* * *
18256073 TCAGATACTTTAATTGCTACTGGTAGCAAACCTGTAAAATC-CTAAATGCTCTTTAAGGGGGTGT
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGT
* * *
18256137 GAGTTCTCATGGTTTGGTGAGGGATAGGTGGCCAATATACGGGCCAAGTACCAGCACCCATCGCA
517 GAGTTCTCA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * *
18256202 TATCATGTGCGTACACCCCCCGGCCGCCCTGATCACCGGAACCCCAGTGTCGTCGGTCAGGTTCT
581 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTCGCCGGTCAGGTTCT
* * * *
18256267 CCGACGATGCTCTGGCGATGGTGCCCTGGCAAAGAAAAATACGGCACCAGCACAGGCTCGAGCCC
646 CCGACGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
18256332 AGCATG
711 AGCATG
** * *
18256338 TGCTGCCACAACCCTCGGTTTGGTCCGATATTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18256403 CCGACAAAATGAACGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAA
66 CCGACAAAA-GAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
18256468 GCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
18256533 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTTATGGCAAGAT
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * *
18256598 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTATTACGGTTCGGGATTTTTTAAAAAATTTT
260 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTT
** * * * *
18256663 TCGAAAAAATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTATTGTTGGCATGAACAAA
324 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* ** * * *
18256728 AAAATTCAGCTAAAAACTCCAACAGTAAAACATTTTGTGACCATTTCAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTT
* *
18256793 TAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18256857 GTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACA
519 GTTCTC-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
18256922 TCATGTGCGCACACCCCGTCGGCCCCCCCGATCACTGGAACCACAATGTCGCCGGTCAGGTTCTC
583 TCATGTGCGCACACCCC-CCGGCCCCCCCGATCACCGGAACCCCAATGTCGCCGGTCAGGTTCTC
* * *
18256987 CGACGATGCTCCGGCTATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCATATGCCCGAGCACA
647 CGACGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAAT-----A-CGGC--A---CC-AG--CA
18257052 GCATGTGCGGCACCAGCACATGGTCGAGCCTAGCATG
698 -CA--T---GC-CC-G---A--G-C---CC-AGCATG
* * * * *
18257089 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
18257154 TTGACGAAACAAGCGGGCGGGCGGGCGGGCGAGCACTA---C-ACC---G-G-CGGGATGCGCAA
66 CCGACAAAAGAA-CGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
18257210 GCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACAACTTCAAATTTCTACATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18257275 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTGATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18257340 GATTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTGA-GGTTCGGGATTTTTTAAAATTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTT
* * * *
18257404 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATTCA-AAA
324 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18257468 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCCTTTAAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTT
18257533 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18257598 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGAACCCATCGCACA
519 GTTCTC-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
18257663 TCATGTGCGCACA-CCCCTGACCCCCCCGATTGA-CAGAACCCCAATGTCGTCGGTCAGGTTCTC
583 TCATGTGCGCACACCCCCCGGCCCCCCCGA-TCACCGGAACCCCAATGTCGCCGGTCAGGTTCTC
* * * *
18257726 CGACGATGCTCCGACGATGGTGCCTCGGCGAAGAAAAA-AGTGGCACCAGCACATGCCCGAGCCC
647 CGACGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATA-CGGCACCAGCACATGCCCGAGCCC
18257790 AGCATG
711 AGCATG
** ** * *
18257796 TGCTATCGTAACCCTCGGT-CGAGTCCGATCTTAGACTGAGAATGAACTCTGTATGC
1 TGCTGCCACAACCCTCGGTCCG-GTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18257852 TTAGACTGGG
Statistics
Matches: 2567, Mismatches: 319, Indels: 134
0.85 0.11 0.04
Matches are distributed among these distances:
706 1 0.00
707 51 0.02
708 2 0.00
711 1 0.00
712 1 0.00
713 2 0.00
714 273 0.11
715 350 0.14
716 1 0.00
717 4 0.00
718 237 0.09
719 636 0.25
720 339 0.13
721 23 0.01
722 1 0.00
724 3 0.00
725 5 0.00
727 3 0.00
728 2 0.00
730 2 0.00
731 3 0.00
733 5 0.00
734 2 0.00
739 71 0.03
740 120 0.05
741 143 0.06
742 180 0.07
743 2 0.00
744 2 0.00
746 1 0.00
747 3 0.00
748 1 0.00
750 4 0.00
751 93 0.04
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (716 bp):
TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACAAAAGAACGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGAC
GATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
G
Found at i:18257061 original size:32 final size:32
Alignment explanation
Indices: 18257025--18257091 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
18257015 CAAAGAAAAA
*
18257025 TGCGGCACCAGCATATGCCCGAGCAC-AGCATG
1 TGCGGCACCAGCACATGCCCGAGC-CTAGCATG
**
18257057 TGCGGCACCAGCACATGGTCGAGCCTAGCATG
1 TGCGGCACCAGCACATGCCCGAGCCTAGCATG
18257089 TGC
1 TGC
18257092 TGCCGCAACC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 1 0.03
32 30 0.97
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (32 bp):
TGCGGCACCAGCACATGCCCGAGCCTAGCATG
Done.