Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 102 of 195
Found at i:18257876 original size:26 final size:26
Alignment explanation
Indices: 18257825--18257877 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18257815 CGAGTCCGAT
**
18257825 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCATATG
*
18257851 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
18257877 C
1 C
18257878 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18259750 original size:711 final size:707
Alignment explanation
Indices: 18257990--18259793 Score: 2551
Period size: 711 Copynumber: 2.5 Consensus size: 707
18257980 CTGCTACCAT
* *
18257990 AACCCTTGGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
* * *
18258055 CGAGCGGGCAGGCAGGCGGGCAAGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCAT
66 CGAGCGGGC--G--GGCGGGC-A----G---TACGCCGGCTAGAGAGACGGGATGCGCAAGCCGT
* * * *
18258120 GGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTTTATGAGCCAATGCCATTTTT
119 GGATCGATAGGGTGGTAGGTGGGTTTA-GTACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
*
18258185 ATGGCTTGT-AATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTC
183 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTC
* * *
18258249 GTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-AGA
247 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA-A
* * *
18258313 AGGATTTTTGGTCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTTGCATGCAC-AAAAAAA
311 AGGATTTTTCGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTTGCATGCACAAAAAAAA
* *
18258377 ATCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
375 ATCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
18258442 CACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTC
440 CACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTC
* **
18258507 TCGAGATTTGATGAGGGATAGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATG
505 TCGAGATTTGATGAGGGATAGGGGACAATATAAGGGCCAACTACCAGCACCCATCGCACATCATG
* * * **
18258572 TGCGCACACCCCCCGGCCCCTCCGACCGCAGGAACCCCAACGTCGCCGGTCAGGTTCTCCGACGA
570 TGAGCACACCCCCCGGCCCCCCCGACCACAGGAACCCCAACACCGCCGGTCAGGTTCTCCGACGA
* * * * * * *
18258637 TGCTCCGGTGATCGTGGCCTAACGAAGAAAAATATGGCACCAGCACATGCCCTAGCACAGTATGT
635 TGATCCAGTGATCGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCACAGCATGT
* *
18258702 CCTGTCGT
700 CCTGCCGC
* * *
18258710 AACCCTCGGTCCAGTTCGATCTTAGGCTGGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
* ** * * ** *
18258775 CAAGCGGGCGGGCGGGC-GGGCG-AGCACTACG-CCGATGGGATGCGCAAGCCGTGGATCGATAG
66 CGAGCGGGCGGGCGGGCAGTACGCCG-GCTA-GAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
18258837 GGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTA
129 GGTGGTAGGTGGGTTTAGT-ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTA
*
18258902 AATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATT
193 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG-CAAGACGACTCGTTTTCTATT
* * ** * * *
18258967 TTTCACGATTTTTAAAAATTTTTGTGGTTAGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTTG
257 TTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTCG
* * * *
18259032 CCCCAAACTGGGTAGAGGTGATCCTTGAATTTTTTTTGGTATGCACAAAAAAAAATCAGCTAAAA
322 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT-GCATGCACAAAAAAAAATCAGCTAAAA
* * *
18259097 CCACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGTCATTTTAATGG
386 ACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
18259162 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTCGAGCTTTGA
451 CTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGATTTGA
18259227 TGAGGGATAGGGGGACAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGAGCACACC
516 TGAGGGATA-GGGGACAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGAGCACACC
* * * *
18259292 CCCCGGCCCCCCCGATCACCGGAACCCCAATACCGCCTGTCAGGTTCTCCGACGATGATCCAGTG
580 CCCCGGCCCCCCCGACCACAGGAACCCCAACACCGCCGGTCAGGTTCTCCGACGATGATCCAGTG
* * * * * *
18259357 ATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGC
645 ATCGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCACAGCATGTCCTGCCGC
* *
18259420 AACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
1 AACCCTCGGTCCAGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
* *
18259484 ACGAGCGGGCGGGCGGGCAGTACGCCGGCTAGAGAGACGAGATGCGCAAGCCGTTGATCGATAGG
65 ACGAGCGGGCGGGCGGGCAGTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
18259549 GTGGTAGGTTGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTATAA
130 GTGGTAGGTGGGTTTA-GTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAA
* *
18259614 ATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATCGCAAGACGACTCATTTTCTATTT
194 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTCGTTTTCTATTT
* *
18259679 TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTACAATTTTTTCGAAAGGAGTTTTCGC
258 TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTCGC
18259744 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGCATGCACAAAAA
323 CCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGCATGCACAAAAA
18259794 CCTCAAATGC
Statistics
Matches: 959, Mismatches: 109, Indels: 41
0.86 0.10 0.04
Matches are distributed among these distances:
706 2 0.00
707 91 0.09
708 152 0.16
709 151 0.16
710 230 0.24
711 245 0.26
712 12 0.01
716 7 0.01
718 1 0.00
720 68 0.07
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (707 bp):
AACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
CGAGCGGGCGGGCGGGCAGTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCAAGACGACTCGTTTTCTATTTTTC
ACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTCGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGCATGCACAAAAAAAAATCAGCTAAAAACACG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGATTTGATGAGG
GATAGGGGACAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGAGCACACCCCCCGG
CCCCCCCGACCACAGGAACCCCAACACCGCCGGTCAGGTTCTCCGACGATGATCCAGTGATCGTG
CCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCACAGCATGTCCTGCCGC
Found at i:18261890 original size:713 final size:712
Alignment explanation
Indices: 18259790--18263601 Score: 5048
Period size: 682 Copynumber: 5.4 Consensus size: 712
18259780 TGCATGCACA
* * ** *
18259790 AAAACCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTTGAGGTTTGATGAGGGACAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
18259855 ATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGAGCACACCACCCGGCCCCCCGATCACC
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACC
* *
18259920 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGATGAAGAAA
131 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
** * * * *
18259985 AATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCGTCGGTTCAGTCTGATCT
196 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCGGTCCAGTCTGATCT
* *
18260050 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAACGGGCAGGCGGGCGGGCG
261 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---GCGGGCGGGCGGGCG
*
18260115 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTT
322 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
18260180 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTC
387 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
18260245 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGCTTTT-TATTTTTCACGATTTTCAA
452 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCAAGATTTTCAA
* * *
18260309 AACTTTTTACAGTTCAGGAGTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACCTGGTA
516 AACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTTGGAAGGA-TTTTGGCCCCAAACTTGGTA
* * * * *
18260374 GATGCGATCCTTGCATTTTTGTTGCCATGCA-AAAGAAAATTCAGCTAAAAACTCGAAGTGTACA
579 GACGTGATCCTTGTATTTTTCTTGGCATGCACAAA-AAAATTCAGCTAAAAACTCGAAGTGTACA
* ** * * *
18260438 AGATTTTATGACCATTTGAAAAAAGTGTCCTTAATTCAGACACTTTAATTGCTACTGGAAGCAAA
643 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
18260503 CCTGT
708 CCTGT
* * * *
18260508 AAAATCTCAAATGGTCCTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGGCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
*
18260573 ATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCA
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCA
** * * * *
18260638 TTGGAACCCTAATGCCGCCGGTTAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGA
129 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGA
* **
18260703 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCAGTCTGAT
194 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCGGTCCAGTCTGAT
*
18260768 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
259 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--G
* * *
18260833 CGGTCACAACACCGGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
322 -GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
18260898 TTAGG-ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGG
385 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
18260962 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTCACGATTTTCA
450 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCA
* * * * *
18261027 AAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTTGAAGGTGTTTTGGCCCCAAACTTGGTA
515 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGG-ATTTTGGCCCCAAACTTGGTA
* * *
18261092 GACGTGATCCTTGGATTTTT-AT-GCATGCACAAAAAAATTCAGCT-AAAACTTGAAGTGTACAA
579 GACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * *
18261154 CATTTTGTGATCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGTAAAC
644 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
18261219 CTGT
709 CTGT
* * * *
18261223 AAAATCTGAAATGCTCTTTCAGGGGGTGTGAGTTCTCAAGGTTTGTTGAGGGATAGGAGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
**
18261288 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACC
* ** * * * * *
18261353 GAAACTGCAAAGCCACCGGTCAGGTTCTCCGACGACGCTCCGGGGATGGTACCCCGACGAAGAAA
131 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * * * * *
18261418 AATACGACACCGGCACATGCCCGAGCCCAGCATGTGTTACCAAAACCCTCAGTCCGGTCTGATCT
196 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCGGTCCAGTCTGATCT
* * * *
18261483 TAGACTGGGAATGGACTCCGTATGACTAAGCCAATCAACGAAACGAGCGGGCGGGCGGGCGGGCA
261 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * *
18261548 CTACGCCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGCC
326 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
18261613 ACATCTTCATATTTCTGCAAGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTT
391 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * **
18261678 AAGCCTTCACGTGAAGTTGCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTT
456 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTT
** * *
18261743 TTTGTGGTTCGGGATTTTTTAAAACTTTTTTGGAAGGCATATTGGCCCCAAACTTGGTAGACGTG
521 TTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGG-ATTTTGGCCCCAAACTTGGTAGACGTG
* *
18261808 ATCCTTGTATTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTATACAAGATTTT
585 ATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
18261873 GTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCCGT
650 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
** *
18261936 AAAATCTCATCTGCTCTTTAAGGGGGTGTGAGTTCTCATGGTTTGATGAGGGATA-GGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* *
18262000 ATACGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCGCCCGGCCCCCCCGATC
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGG-CCCCCCGATC
* ** * * *
18262065 ACCGGAACCCCAGTGTTGCCGGTCAGGTTCTCCTG-TGATGCTCCGGCAATGGTGCCCCGGCGAA
128 ACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GACGATGCTCCGGCGATGGTGCCCCGACGAA
* *
18262129 GAAAAATGCGGCACCAG--CA------A--CC--C-T-TG--G-------TC-CGGTCCA-----
192 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCGGTCCAGTCTG
* ** *
18262165 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGAC-AAA--A-CGAACGGGCAGGCG
257 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * ** *
18262226 AGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAAGTGGTAGGTTGGTTT
322 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
18262291 AGGCACATCTTCATATTTCTGCACGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTC
387 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
18262356 CCTTAAGCCTTCTCGTGAGGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACA-ATTTTTAA
452 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-AGATTTTCAA
*
18262420 ATCTTTTT-CTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
516 AACTTTTTAC-GGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA-TTTTGGCCCCAAACTTGGTA
*
18262484 GACGTGATCCTTGTA-TTTTCGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAA
579 GACGTGATCCTTGTATTTTTC-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
18262548 ATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACAGCAAA
643 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
18262613 CCTGT
708 CCTGT
* * * *
18262618 AAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGAGAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
*
18262683 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGC
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCAC
* * ** * *
18262748 CGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGCTCCAGTGATGGTGCCCCGACGAAGAA
130 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAA
** ** *
18262813 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCATCACCCTCGGTCTGGTCCGATC
195 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCGGTCCAGTCTGATC
* * * * * *
18262878 TTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACAAGCGGGCGGGCGTGCAGGC
260 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
** *
18262943 GAGC-ACTAC-GCC---G-G-CGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTA
325 -A-CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* **
18263001 GGCACATCCTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
388 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * * * * *
18263066 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGATTTGTTTTCTATTTTTTATGACTTACGAAA
453 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAA
* * * * *
18263131 CTTTTTAAGGTTCGAGATTTTTTCAGA------TGG-A-G-TTTTGGCCCCAAACTTGGTAGATG
518 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTGGCCCCAAACTTGGTAGACG
* *
18263187 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
583 TGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * **
18263252 TTGTGACCATTTGAAAAAATTGTCCCAATTTTAGACACTTTAATGGCTACTGGCATTAAACCTGT
648 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* ** * **
18263317 AAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTGAAGAGGGATAGGGCACCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* * **
18263382 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGTGCACACCCCCCGGCCCCCTCGATCGT
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCAC
*
18263447 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG-CCCAACGAAGAA
130 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* * * *
18263511 AAATGCGGCACCAGCACATGCCCGA-CCCTAACATGTGCTGCCAAAATCCTTGGTCCAGTCTGAT
195 AAATACGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTGCCAAAACCCTCGGTCCAGTCTGAT
18263575 CTTAGACTGGGAATGAACTCCGTATGC
259 CTTAGACTGGGAATGAACTCCGTATGC
18263602 TTAGACTGGG
Statistics
Matches: 2727, Mismatches: 304, Indels: 146
0.86 0.10 0.05
Matches are distributed among these distances:
680 6 0.00
681 86 0.03
682 413 0.15
683 55 0.02
685 3 0.00
686 38 0.01
689 1 0.00
691 7 0.00
692 1 0.00
693 1 0.00
694 1 0.00
695 2 0.00
697 4 0.00
698 88 0.03
699 304 0.11
700 4 0.00
701 3 0.00
702 2 0.00
703 4 0.00
704 1 0.00
705 7 0.00
707 1 0.00
709 233 0.09
710 232 0.09
711 6 0.00
712 71 0.03
713 307 0.11
714 27 0.01
715 250 0.09
716 32 0.01
717 4 0.00
718 160 0.06
719 141 0.05
720 232 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (712 bp):
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCGGTCCAGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTT
TTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
Found at i:18263315 original size:699 final size:699
Alignment explanation
Indices: 18262147--18263601 Score: 2044
Period size: 699 Copynumber: 2.1 Consensus size: 699
18262137 CGGCACCAGC
* * *
18262147 AACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAA
1 AACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAA
* * *
18262212 CGAACGGGCAGGCGAGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAAG
66 CGAACGGGCAGGCGAGCACGACACTCGCC--AGAGACGGGATGCGCAAGCCGTGGATCGATAAAG
* *
18262277 TGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCACGCCAATGCCATTTTTAAGGCTTGTAAA
129 TGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCACGCCAATGCCATTTTTAAGGCTTGTAAA
* *
18262342 TTCATACAATGGTCCCTTAAGCCTTCTCGTGAGGTTTCATGCCAAGACGACTCGTTTTCTATTTT
194 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTT
*** ** *
18262407 TCACAATTTTTAAATCTTTTTCTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCC
259 TCACAATTACGAAATCTTTTTAAGGTTCGAGATTTTTT-AAA------T-GAAGGAGTTTTGGCC
18262472 CCAAACTTGGTAGACGTGATCCTTGTATTTTCGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
316 CCAAACTTGGTAGACGTGATCCTTGTATTTTCGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
18262537 CGAAGTGTAAAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
381 CAAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTTAATGGCTA
* *
18262602 CTGACAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCGAGATTTGATGA
446 CTGACAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTATGAGTTCTCGAGATTTGAAGA
** *
18262667 GGGAGAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
511 GGGAGAGGGCACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCGCACACCCCC
* * ** *
18262732 CGGCCCCCTCGATCGCCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGCTCCAGTGATG
576 CGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATG
* * *
18262797 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTGCCAT
641 GTG-CCCAACGAAGAAAAATACGGCACCAGCACATGCCCGA-CCCTAACATGTGCTGCCAA
* * * *
18262857 CACCCTCGGTCTGGTCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAA
1 AACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAA
* * *
18262922 C-AAGCGGGCGGGCGTGCAGGCGAGCACTACGCC-G-G-CGGGATGCGCAAGCCGTGTATCGATA
66 CGAA-CGGGCAGGCGAGCA--CGA-CACT-CGCCAGAGACGGGATGCGCAAGCCGTGGATCGATA
** *** *
18262983 GGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGT
126 AAGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCACGCCAATGCCATTTTTAAGGCTTGT
* * * *
18263048 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGATTTGTTTTCTAT
191 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTAT
* * * * *
18263113 TTTTTATGACTTACGAAA-CTTTTTAAGGTTCGAGATTTTTT-CA-GATGGAGTTTTGGCCCCAA
256 TTTTCA-CAATTACGAAATCTTTTTAAGGTTCGAGATTTTTTAAATGAAGGAGTTTTGGCCCCAA
* *
18263175 ACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
320 ACTTGGTAGACGTGATCCTTGTATTTTCGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
* * *
18263240 GTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCAATTTTAGACACTTTAATGGCTACTGG
385 GTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTTAATGGCTACTGA
** * * *
18263305 CATTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTGAAGAGGGA
450 CAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTATGAGTTCTCGAGATTTGAAGAGGGA
* *
18263370 TAGGGCACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGTGCACACCCCCCGGC
515 GAGGGCACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCGCACACCCCCCGGC
* *
18263435 CCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
580 CCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGC
*
18263500 CCAACGAAGAAAAATGCGGCACCAGCACATGCCCGACCCTAACATGTGCTGCCAA
645 CCAACGAAGAAAAATACGGCACCAGCACATGCCCGACCCTAACATGTGCTGCCAA
* * *
18263555 AATCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18263602 TTAGACTGGG
Statistics
Matches: 662, Mismatches: 76, Indels: 26
0.87 0.10 0.03
Matches are distributed among these distances:
697 3 0.00
698 88 0.13
699 315 0.48
707 1 0.00
709 168 0.25
710 78 0.12
711 1 0.00
712 2 0.00
713 3 0.00
714 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (699 bp):
AACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAA
CGAACGGGCAGGCGAGCACGACACTCGCCAGAGACGGGATGCGCAAGCCGTGGATCGATAAAGTG
GTAGGTGGGTTTAGGCACATCCTCATATTTCTGCACGCCAATGCCATTTTTAAGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTC
ACAATTACGAAATCTTTTTAAGGTTCGAGATTTTTTAAATGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTCGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAA
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTTAATGGCTACTGACAGCAA
ACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTATGAGTTCTCGAGATTTGAAGAGGGAGAGGGC
ACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCGCACACCCCCCGGCCCCCTC
GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCAACG
AAGAAAAATACGGCACCAGCACATGCCCGACCCTAACATGTGCTGCCAA
Found at i:18263625 original size:26 final size:26
Alignment explanation
Indices: 18263575--18263627 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18263565 CCAGTCTGAT
*
18263575 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
18263601 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
18263627 C
1 C
18263628 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:18264502 original size:26 final size:26
Alignment explanation
Indices: 18264473--18264525 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18264463 CCGGTCCGAT
18264473 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18264499 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18264525 C
1 C
18264526 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18264694 original size:26 final size:26
Alignment explanation
Indices: 18264658--18264710 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18264648 CTGATCCAAT
*
18264658 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
18264684 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
18264710 C
1 C
18264711 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:18268798 original size:899 final size:884
Alignment explanation
Indices: 18266720--18269456 Score: 3830
Period size: 899 Copynumber: 3.1 Consensus size: 884
18266710 TCCGATCTTA
* * * *
18266720 GACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGGC
1 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * ** *
18266785 CAGAGGGGTAGTATGCGTAAGCCGAGGATCGACCGGGTCCCCCTCTGCATGCTGTCGATCCTGCT
66 CAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
* ** ** * *
18266850 GTCTTAACCCTCGGTTCAATTCGATCTTAGACTGGGAATGAACT-CATATGCCTAAGGCAA-TCG
131 GCCACAACCCTCGG-TCAGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-G
* * * **
18266913 ACAAAACGAGC-GGC---TGGCGGGCACTATGCCGGCCTGAGAGACGGGATAAGCAAGCCGTGGA
194 ACGAAACGAGCGGGCGGGTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
18266974 TCGATAGGGTGCTAGGTGGGTTTAGGCACATCATCAATATTTCTGCATGCCAATGCCATTTTTAT
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC-ATATTTCTACATGCCAATGCCATTTTTAT
* *
18267039 GGCTTGTAAATTCATGCAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
18267104 TTTCTATTCTTCATGATTTTGAAAC-TTTTACGGTTCGGGATTTTTT-AAATGTTTTTTGGAAGG
388 TTTCTATTTTTCATGATTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAT-TTTTTCGAAAGG
* * * *
18267167 AGTTTTGGTCCCAAACTTTGTAGATGTGATCCTTGTATTTTTGTTGGTATGCACAAAACAAATCA
452 AGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAA-AATTCA
*
18267232 GCTAAAAACTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACT
515 GCTAAAAACTCGA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
18267297 TTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGA
579 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
* *
18267362 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCATTGCACATCATGTGC
644 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
18267427 GTACA-CCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGA-CGAT
709 GCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAGCGAT
* * *
18267490 GGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGTATGTG-TGGCCGCAAC
774 GGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCT-GTCGCAAC
* * * * *
18267554 CCTCGGTCCGATCCAATCTTAGACTAGGAGTGAAC-TCTGTATGCTTG
838 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTG
*
18267601 GACT-GGCAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
1 GACTAGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * * *
18267665 CCAGAGGGGCGAGATGCACAAGCCAGGG-TCGGTTGGGTCCCCCTCTACGTGCTGCCGATCCTAC
65 CCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGC
* * * *
18267729 TGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCG
130 TGCCACAACCCTCGGTCAGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG
* * * *
18267794 ACGAAACGAGCGGACGGGTGGGCGGGCACTACGCCGGTCAAAGAGACGGGATGCGCAAGCCATGG
194 ACGAAACGAGCGGGCGGGT-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
18267859 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTAT
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * *
18267924 GGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAGGACGACTCGT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
18267989 TTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGG
388 TTTCTATTTTTCATGATTTT-GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGG
* **
18268054 ATTTTTGGTCATAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGCATGCACAAAAAGATTCA
452 AGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTT-TGTTGGCATGCACAAAAA-ATTCA
* * * *
18268119 GCTAAAAACTCGAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTTAGACACTT
515 GCTAAAAACTCGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
18268184 TAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGCTTTGAGTTCTTGAG
580 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
* * ** * *
18268249 GTTTGATGAGGGATAGGGGGCTAATATAAAGAACTAGTACCAACACCCATCGCACATCATGTGCG
645 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
18268314 CACACCCCCCCGGCCCCCCCGATTGCCGGAACCCCAATGCCACCGATCAGGTTCTCCTGCGATGC
710 CACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCT-C--CGA-G-
**
18268379 TCCAGAGATGGTGCCCCGGTGAAGAAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCT
770 --C---GATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCT
* *
18268444 ATCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTG
830 GTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTG
* * * * *
18268499 GACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTTAGCCGGT
1 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
18268564 CAGAGCGGTGGGATGGGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCT
66 CAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
* * *
18268629 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGA
131 GCCACAACCCTCGGTCAGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* *
18268694 CGAAACGAGCGGGCGGGTAGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
195 CGAAACGAGCGGGCGGGT-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* **
18268759 TCTATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* * * * *
18268824 GCTTGTAAATTCATAGAATGGTCCTTTAAGCATTCACGTGAAGTTTCATGGCAAGAAGACTTGTT
324 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
18268889 TTCTTTTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGA
389 TTCTATTTTTCATGA-TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGA
* *
18268954 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGGCATGCACAAAAAAATTCAG
453 GTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTGTT-GGCATGCAC-AAAAAATTCAG
*
18269019 CTAAAAACTCCGAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTT
516 CTAAAAACT-CGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
18269084 TAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
580 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
*
18269149 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCG
645 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
18269214 CACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCAGATCAGGTTCTCCG-GCGATG
710 CACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAGCGATG
* *
18269278 GTGCCCCGACGAAGAAAAATGTGTCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGTAACCC
775 GTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCC
** * *
18269343 TCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
840 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTG
* * * *
18269388 GACTAGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGCGCGGGCGCTCAACCGGC
1 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
18269453 CAGA
66 CAGA
18269457 AGGGCCGGAT
Statistics
Matches: 1633, Mismatches: 188, Indels: 62
0.87 0.10 0.03
Matches are distributed among these distances:
879 3 0.00
880 65 0.04
881 101 0.06
882 2 0.00
885 107 0.07
886 246 0.15
887 140 0.09
888 5 0.00
889 164 0.10
890 3 0.00
892 1 0.00
895 2 0.00
897 2 0.00
898 177 0.11
899 388 0.24
900 227 0.14
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
GCCACAACCCTCGGTCAGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
GAAACGAGCGGGCGGGTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCATGATTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTT
TTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAATTCAGCTAAA
AACTCGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAGCGATGGTGCCC
CGACGAAGAAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCGGTC
TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTG
Found at i:18269396 original size:26 final size:26
Alignment explanation
Indices: 18269358--18269410 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18269348 CTGGTTTGAT
*
18269358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18269384 CTTAGACTAGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18269410 C
1 C
18269411 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18270109 original size:26 final size:26
Alignment explanation
Indices: 18270066--18270118 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18270056 TTGATCTGAT
* *
18270066 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* *
18270092 CTTAGACTGGGAACGAACTCTGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
18270118 C
1 C
18270119 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:18271905 original size:26 final size:26
Alignment explanation
Indices: 18271869--18271921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18271859 CTGGTTCGAT
* *
18271869 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18271895 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18271921 C
1 C
18271922 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18272807 original size:26 final size:26
Alignment explanation
Indices: 18272769--18272821 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18272759 CCAGTCCGAT
* * *
18272769 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18272795 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18272821 C
1 C
18272822 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18276077 original size:878 final size:875
Alignment explanation
Indices: 18273952--18279290 Score: 5474
Period size: 878 Copynumber: 6.0 Consensus size: 875
18273942 CGTGGATCGA
* * *
18273952 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC--AACGAGTGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTG
* * * * ** *
18274015 GCCATAGGGGCAGGATGCGTAA-CTTGGAGATCGATCGGATCCCCCTCTGC--G-T---G---CT
66 GCCAGAGGGGCGGGATGCGCAAGC-CGG-GATCGGCCGGGTCCCCCTCTGCGTGATGCCGATCCT
* * * *
18274070 GC--C-ACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCCAAT
129 GCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * ** *
18274132 CGACGAAAC--GTA--CGGGCGAGCGGGCGGGCGCTACGCTGGATAGAGAGACGGGATGTGCAAG
194 CGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
18274193 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTGCATATTTTTGCATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
18274258 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
18274323 ACTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGAGATCTTTTAAAATTTTTT
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTT
* * * * * *
18274387 CGGAAGGAGTTTTAGTCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGCTGGCATGCCCAAAA
453 CGGAA-GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18274452 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTA
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18274517 AGACACTTTAATGGCTACTAGCAACAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
18274582 TTCTTGATGTTTGATGTGGGATAGGGGGCCAATATAAAGGCCAAGTA-CAGTACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18274646 CATGTGCGCACACCCCCTC-GCCCCCCCGATCGTCGGAACCCCAATGTCGCCGATCAGGTTCTCT
712 CATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * * *
18274710 GGCGATGCTCTG-CGATGGTGCCTC-AGTGAAAAAAAATGTGGCACCAACACATGCCCTAGCCCA
777 GGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAAT-AGGCACCAGCACATGCCCGAGCCCA
* * * *
18274773 GAATGT-CTGTCGCAACCCTCGGTCCGGTCTGAT-T
840 GCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCT
* * * * * *
18274807 ATAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGCTTAGCC
1 -TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT
* * *
18274872 GGCTAGAGGGGCGGGATGTGCAAGCCTGGGATCGGTCTGCCGATCTTGCTACCGTAACCCTC-G-
65 GGCCAGAGGGGCGGGATGCGCAAGCC-GGGATC-G---GCCG-----GGT-CC----CCCTCTGC
* * ** * * ** **
18274935 GTTCGGTCCCCCTCTGTGC-GCTACCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAA
115 G-T-GATGCCGATC-CTGCTGCT---GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
* * * * * * * *
18274999 CTCC-TATGCCTAAGCCATCCGATGAAATGAGC-GAGTGGACGCGCGAGCGGGTACTACGCCGGC
174 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-GCGGGCGGGCGGGCGGGCACTACGCCGGC
**
18275062 CAGAGAGACGGGATGTACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
238 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
18275127 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCAC
303 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
*
18275192 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTT
368 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TT
* **
18275257 C-AGATTTTTTAAAA-TTTTTCAGAAGCATTTTTGGCCCCAAACTTTCTAGACGTGATCCTTGTA
432 CGAGATTTTTTAAAATTTTTTCGGAAG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
18275320 -TTTTGTTGGCATGCA-AAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGATCATT
496 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
18275382 CGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTAGCAGCAAACCTGT-AATTCTCAAA
561 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAA
* * * *
18275446 TGCCCTTTCAGGGGGTGTGAGTTCTTGAGG-TTGATGAGGGATAGGGGGCCAATATAAGGGAC-A
626 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
18275509 GTACCAGCAGGCCATCGGCACATCATGTGAGCGACA-CCCCTCGGCCCCACGGATCGTCGGAACG
691 GTACCAGCA-CCCATC-GCACATCATGTGCGC-ACACCCCCTCGGCCCCCCCGATCGTCGGAAC-
* * * * * *
18275573 CCCAATGCCGCCGGTCAGGTTTCTCCGGTGATGCTCTGGCAATGGTGCCCCGGCGAAGAAAATTA
752 CCCAATGCCGCCGGTCAGG-TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATA
*
18275638 CGGCACCAGCACATGCTCCGCGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGAT-T
816 -GGCACCAGCACATGC-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCT
* *
18275699 TAGACT-GGAATGGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGGTGGCGGGGCGCTCA
1 TAGACTGGGAAT-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-CGT-GC-GGGCGCTCA
* * *
18275763 GCTGGCCAGAGGGGCGGGATGCGCAAGTCGAGAATCGACCGGGTCCCCCTCTGCGTGATGCCGAT
62 GCTGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGCCGGGTCCCCCTCTGCGTGATGCCGAT
* *
18275828 CCTGCTGCTGCAACCCTCGCTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
126 CCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
18275893 AACCGACGAAACGAGCAGGCGGGCGGGTGGGTGGGCACTACGTCGGCCAGAAAGACAGGAAGCGC
191 AACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * **
18275958 AAGCCTTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
18276023 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
18276088 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
18276153 TTCGGAAGCAATTTTGGCCCCAAAATTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAA
451 TTCGGAAG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
18276218 ACAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCAT
515 A-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18276283 TTCAGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGT
579 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
18276347 GAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
18276412 CATCATGTGTGCACACCCCC-CGG-CCCCCCGATCG-CTAGAACCCCAATGCCGCCTGTCAGGTT
709 CATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTT
*
18276474 CT----C--TG----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG-CCGAGC
773 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-AGGCACCAGCACATGCCCGAGC
* * *
18276527 CCAGCATGTGCTGTCGTAACCCTTGGTCTGATCCGATCTCTGACTGGGAATGAACTCCATATGCT
837 CCAGCATGTGCTGCCGCAACCC----TC-G----G---TC---C-------G-A-TCC-GAT-CT
* * *
18276592 TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTG
* * * * * *
18276657 G-CAGACGGGCGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTTTGCGTGCTGTCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCCGGGTCCCCCTCTGCGTGATGCCGATCCTG
* *** * * * * * *
18276721 CTACCATAAACCTCGGTCTGGT-TCGATTTTAGATTGGGAATGAACTCCGTATACCTAAGCCGAT
130 CTGCTGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * ** *
18276785 CGATGAAAC-A--A-----ACAGGCGGTCGGGCACTACGCCGGCCATAGAGGCAAGATGCACAAG
194 CGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * **
18276842 CCGTGGATCGATAGGAATGGTAGGTTGGGTTTAGGCACAGCTTCATATTTCCACGTGCCAATGCC
259 CCGTGGATCGATAGG-GTGGTAGG-TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
18276907 ATCTTTTATGGCTTGTAAATTCATA-ACATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
322 AT-TTTTATGGCTTGTAAATTCATACA-ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** *
18276971 GACGACTCGTTTTCTATTTTTCATGATTTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATT
385 GACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * * * *
18277036 TTTTTGGAAAGAGTTTTTGCCCCCAAACTTCGTAGACGTGATTCTTTGTATTTTTTTTGGCATGC
449 TTTTCGG-AAGA-TTTTTGGCCCCAAACTTGGTAGACGTGA-TCCTTGTATTTTTGTTGGCATGC
* *
18277101 ACAAAAAAATTTAGCT-AAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCC
511 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
18277165 CATTTCAGACAATTTAATGGCTACTAGCAGCAAACCTGT-AAATCTCAAATGCCCTTTAA-GGGG
576 CATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * *
18277228 TGTGAGTTCTC-AGG-TTAAT-AAGGATAGGGGGCAAATATAACGGCCAAGTACCAGTACCGCAT
641 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-CAT
** * * ***
18277290 CGCACATCATGT-CGCACACCCCCTCGG-CCCCCCGATCACCGAAACCTCAAATGCTATC-GTCA
705 CGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACC-CCAATGCCGCCGGTCA
*
18277352 GGTTCTCCGGTGAATGCTCCGACGATGGTG-CCCGACGAA-AAAACAT--GCAGCTCAGCCAACA
769 GGTTCTCCGGCG-ATGCTCCGACGATGGTGCCCCGACGAAGAAAA-ATAGGCA-C-CAG-C-ACA
*
18277413 TGCCC-AGCCCAACAT-TGCTGCCGCAACCCTTGGTTCGCGGTTCGATCTTAGACTGTGAATGAA
828 TGCCCGAGCCCAGCATGTGCTGCCGCAACCC-----T--C-G---G-TC-----C-------G-A
*
18277476 CTCCATTATGCT
868 -TCC--GAT-CT
* * *
18277488 TAGACTGCGGAATGAACTCCTTATGGACTAAGTCAACCCACGAAACGAGCG-GCGGGTGCTCCA-
1 TAGACTG-GGAATGAACTCCGTAT-GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CAG
* * * * * * *
18277551 CCGCCCAGAAGGGTGGGAT-C-CAAGTCGGGATCGGTCGGGTACCCCTCTGC-TGATGCCGGATC
63 CTGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGGCCGGGTCCCCCTCTGCGTGATGCC-GATC
* * * *
18277613 TTGCTGC-GCAACCCTCCGGTTTGGT-TCGATCTTAAGACTGGG-ATGGACTCCGT-TGCCTACG
127 CTGCTGCTGCAACCCT-CGGTCTGGTCT-GATCTT-AGACTGGGAATGAACTCCGTATGCCTAAG
* ** * * * * * * * *
18277674 CGCCAGTGATGAACACGAACGGGCGGACAGGCCAGGCGATTGGGCACTATCACTGGCCAGAGAGA
189 C-CAACCGACGAA-ACGAGCAGGCGGGC-GGGC-GG-G--CGGGCACTA-CGCCGGCCAGAGAGA
* * * * *
18277739 TGGGCATGCGTAAGTCGTGGATCG-TAGGGTAGTAGGTTGGGTTTAGGGCGACATCGTCATATTT
246 CGGG-ATGCGCAAGCCGTGGATCGATAGGGTGGTAGG-TGGGTTTA-GGC-ACATCTTCATATTT
* * *
18277803 CTGCATGCCAATGTCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGA
307 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * *
18277868 AGTTTCATGGC-AGACGACTCG-TTTCTAATTTTCACGATTTATGAAACTTATTGCGGTTCGAGA
372 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA
* * *
18277931 TTTTTTAAAATTTTTTC-GAAGGATTTTTGGGCCC-ACCTTGGTAGACGTGATCCTTATATTTTT
437 TTTTTTAAAATTTTTTCGGAA-GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTT
* *
18277994 TTTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTTGTGACCATTTGG
500 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTT-G
* *
18278059 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATG
563 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
* *
18278124 CTC-TTAAGGGGCCTGGCCTTGAAGTTTCTCGAGGTATTGATGAGGGATAGGGGCCCAAGTATAA
628 CTCTTTAAGGGG-GT-G---TG-AG-TTCTCGAGGT-TTGATGAGGGATAGGGGGCCAA-TATAA
* *
18278188 GGGGCCAAGTACTTAGCGACCCATCGCACATCATGATGCCGCACA-CCCCACGGCCCCCCCGAAT
684 -GGGCCAAGTAC-CAGC-ACCCATCGCACATCATG-TG-CGCACACCCCCTCGGCCCCCCCG-AT
* *
18278252 ACGTCGG-ACACCCAATGCTGTCGGTCTAGGTTCTCCGGCGATGCTTCCGACGATGGTG-CCCGA
743 -CGTCGGAAC-CCCAATGCCGCCGGTC-AGGTTCTCCGGCGATGC-TCCGACGATGGTGCCCCGA
* * * * *
18278315 CAAAGAAAAATGAGGCACCAGCACATGCTCGAGCCCAGTATGTGCTACCGCAACCCTCGGTCCGG
804 CGAAGAAAAAT-AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA
18278380 TCCGATCT
868 TCCGATCT
* * * * *
18278388 TAGACTGGGAATTAACTCTGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG-TC
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-
* * * ** * * * *
18278452 GGCCAGAGGGGCGGGATGTGTAAGACGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCTT
65 GGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCGGCCGGGTCCCCCTCTGCGTGATGCCGATCCT
* * * * * *
18278517 GCTGCTACAACCTTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
129 GCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
** * * * * *
18278582 CGACGAAACGAGGGGGCAGGCAGGCAGGCGGGCACTACGCCAGCCAGAGAGACGAGATGCGCAAG
194 CGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
18278647 CCGTGGATCAATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCGTGGCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * *
18278712 TTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGATG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
18278777 ACTCGTTTTCTATTTGTCAC-AGTTTTTGAAACTTTTTGCGGTTAGGGAATTTTTAAAATTTTTT
389 ACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
** * * * * *
18278841 CTAAAAGAGTTTTGGCCTCAAACATGGTAGACGTGAGCCTTGTATTTTTGTTGGCATGCATAAAA
453 C-GGAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18278906 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18278971 AGACACTTTAATGGCTAC-AGCCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGA
582 AGACACTTTAATGGCTACTAG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
18279035 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCCCCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18279100 TCATGTGTGCACACCCCCTCCGGCCCCCCCGATCGCCTGAACCCCAATGCCGTCGGTCAGGTTCT
711 TCATGTGCGCACACCCCCT-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* ** * *
18279165 CCGGCGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGGGGCACCAGCACATGCCGGAGCCC
775 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-AGGCACCAGCACATGCCCGAGCCC
* * * * *
18279230 AACATGTACTACCGTAACCCTC-GTCC-AGTCTGATCT
839 AGCATGTGCTGCCGCAACCCTCGGTCCGA-TCCGATCT
18279266 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18279291 TTGGACTAGG
Statistics
Matches: 3781, Mismatches: 469, Indels: 444
0.81 0.10 0.09
Matches are distributed among these distances:
856 37 0.01
858 43 0.01
859 4 0.00
862 2 0.00
866 25 0.01
867 2 0.00
868 38 0.01
869 1 0.00
870 2 0.00
871 2 0.00
872 5 0.00
873 2 0.00
874 1 0.00
875 2 0.00
877 39 0.01
878 285 0.08
879 120 0.03
880 72 0.02
881 121 0.03
882 102 0.03
883 175 0.05
884 215 0.06
885 180 0.05
886 177 0.05
887 107 0.03
888 37 0.01
889 172 0.05
890 272 0.07
891 58 0.02
892 123 0.03
893 147 0.04
894 178 0.05
895 167 0.04
896 57 0.02
897 26 0.01
898 64 0.02
899 35 0.01
900 11 0.00
901 23 0.01
902 61 0.02
903 28 0.01
904 46 0.01
905 32 0.01
906 19 0.01
907 92 0.02
908 31 0.01
909 34 0.01
910 77 0.02
911 42 0.01
912 1 0.00
913 2 0.00
914 2 0.00
915 5 0.00
916 3 0.00
917 2 0.00
918 5 0.00
919 13 0.00
920 5 0.00
921 11 0.00
922 17 0.00
923 4 0.00
924 8 0.00
925 13 0.00
926 13 0.00
927 18 0.00
928 44 0.01
929 20 0.01
930 1 0.00
931 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTG
GCCAGAGGGGCGGGATGCGCAAGCCGGGATCGGCCGGGTCCCCCTCTGCGTGATGCCGATCCTGC
TGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGATCCGATCT
Found at i:18277210 original size:884 final size:873
Alignment explanation
Indices: 18273952--18279250 Score: 5061
Period size: 890 Copynumber: 6.0 Consensus size: 873
18273942 CGTGGATCGA
* * *
18273952 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC--AACGAGTGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTG
* * * * * * *
18274015 GCCATAGGGGCAGGATGCGTAA-CTTGGAGATC-GATCGGATCCCCCTCTGCGTGCT---G---C
66 G-CAGAGGGGCGGGATGCGCAAGC-CGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATCC
* *
18274072 --C-A--CAACCCTCGGTCTGG-TCTGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCCAA
128 TGCTACCCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** *
18274131 TCGACGAAACGTACGGGC-GAGC-GGGCGGGCGCTACGCTGGATAGAGAGACGGGATGTGCAAGC
192 TCGATGAAACG-A-AGGCAG-GCAGGTCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
18274194 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTGCATATTTTTGCATGCCAATGCCATT
254 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
*
18274259 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGA
319 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
18274324 CTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTGAGGTTCGAGATCTTTTAAAATTTTTTCG
384 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
* * * * * * *
18274389 GAAGGAGTTTTAGTCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGCTGGCATGCCCAAAAAA
449 GAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18274454 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTAAG
514 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18274519 ACACTTTAATGGCTACTAGCAACAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTT
579 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
* * * * *
18274584 CTTGATGTTTGATGTGGGATAGGGGGCCAATATAAAGGCCAAGTA-CAGTACCCATCGCACATCA
643 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
18274648 TGTGCGCACACCCCCTCGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGATCAGGTTCTCTGGC
708 TGTGCGCACACCCCC-CGGCCCCCCGATCGTC-GAACCCCAATGCCGCCGGTCAGGTTCTC---C
* * * * * * *
18274713 GATGCTCTG-CGATGGTGCCTC-AGTGAAAAAAAATGTGGCACCAACACATGCCCTAGCCCAGAA
768 G-TG--C-GACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCA
* *
18274776 TGT-CTGTCGCAACCCTCGGTC--CG--GTC---TGA-T---TA----
827 TGTGCTGCCGCAACCCT-GGTCGTCGATCTCTGATGACTCCATATGCT
* * * * * *
18274808 TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGCTTAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTG
* *
18274873 GCTAGAGGGGCGGGATGTGCAAGCCTGGGATCGGTCTGCCGATCTTGCTACCGTAACCCTC-G-G
66 GC-AGAGGGGCGGGATGCGCAAGCCGGGGATCGG-CTG--G-----G-T-CC----CCCTCTGCG
* * ** * * ** * *
18274936 TTCGGTCCCCCTCTGTGCGCTACCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACT
116 -T-GCTGCCGATC-CT--GCTACC-CAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACT
* * *
18275001 CC-TATGCCTAAGCC-ATCCGATGAAATGAGCGAGTGGACGCGC-GAG-CGGGTACTACGCCGGC
175 CCGTATGCCTAAGCCAAT-CGATGAAACGA---AG-GCA-G-GCAG-GTCGGGCACTACGCCGGC
**
18275062 CAGAGAGACGGGATGTACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
232 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
18275127 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCAC
297 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
18275192 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTT
362 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG-TT
* **
18275257 C-AGATTTTTTAAAA-TTTTTCAG-AAGCATTTTTGGCCCCAAACTTTCTAGACGTGATCCTTGT
426 CGAGATTTTTTAAAATTTTTTCGGAAAG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
18275319 A-TTTTGTTGGCATGCA-AAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGATCAT
490 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
18275381 TCGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTAGCAGCAAACCTGT-AATTCTCAA
555 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAA
* * * *
18275445 ATGCCCTTTCAGGGGGTGTGAGTTCTTGAGG-TTGATGAGGGATAGGGGGCCAATATAAGGGAC-
620 ATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
18275508 AGTACCAGCAGGCCATCGGCACATCATGTGAGCGACACCCCTCGGCCCCACGGATCGTCGGAACG
684 AGTACCAGCA-CCCATC-GCACATCATGTGCGC-ACACCCCCCGGCCCC-CCGATCGTC-GAAC-
* * * * *
18275573 CCCAATGCCGCCGGTCAGGTTTCTCCGGTGATGCTCTGGCAATGGTGCCCCGGCGAAGAAAATTA
743 CCCAATGCCGCCGGTCAGG-TTCTCC---G-TG--C-GACGATGGTGCCCCGACGAAGAAAAATG
*
18275638 CGGCACCAGCACATGCTCCGCGCCCAGCATGTGCTGCCGCAACCC---TCG--G-TC-C----GA
800 CGGCACCAGCACATG--CCGAGCCCAGCATGTGCTGCCGCAACCCTGGTCGTCGATCTCTGATGA
*
18275692 -TCC-GAT--T
863 CTCCATATGCT
* *
18275699 TAGACT-GGAATGGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGGTGGCGGGGCGCTCA
1 TAGACTGGGAAT-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-CGT-GC-GGGCGCTCA
* * * * * *
18275763 GCTGGCCAGAGGGGCGGGATGCGCAAGTCGAGAATCGACCGGGTCCCCCTCTGCGTGATGCCGAT
62 GCTGG-CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
18275828 CCTGCTGCTGCAACCCTCGCTCT-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
126 CCTGCTAC-CCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * * * *
18275892 CAACCGACGAAACGAGCAGGCGGGCGGGTGGGTGGGCACTACGTCGGCCAGAAAGACAGGAAGCG
189 CAATCGATGAAACGA--AGGCAGGCAGGT---CGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * **
18275957 CAAGCCTTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATG
249 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
*
18276022 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAA
314 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
18276087 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTT
379 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* * *
18276152 TTTCGG-AAGCAATTTTGGCCCCAAAATTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCAC
444 TTTCGGAAAG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
18276216 AAACAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCC
508 AAA-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
18276281 ATTTCAGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTG
572 ATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTG
*
18276346 TGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
637 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
18276411 ACATCATGTGTGCACACCCCCCGGCCCCCCGATCGCTAGAACCCCAATGCCGCCTGTCAGGTTCT
702 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCG-TCGAACCCCAATGCCGCCGGTCAGGTTCT
18276476 -C-TG-G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTG
766 CCGTGCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTG
* *
18276537 CTGTCGTAACCCTTGGTCTGATCCGATCTCTGACTGGGAATGAACTCCATATGCT
831 CTGCCGCAACCC-TGGTC-G-T-CGA--TCT--CT--G-ATG-ACTCCATATGCT
* * *
18276592 TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTG
* * * *
18276657 GCAGACGGGCGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTTTGCGTGCTGTCGATCCTGC
66 GCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * * *
18276722 TACCATAAACCTCGGTCTGGTTCGATTTTAGATTGGGAATGAACTCCGTATACCTAAGCCGATCG
131 TACC-CAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCG
* * * ** *
18276787 ATGAAAC-AA-ACAGGC-GGTCGGGCACTACGCCGGCCATAGAGGCAAGATGCACAAGCCGTGGA
195 ATGAAACGAAGGCAGGCAGGTCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * **
18276849 TCGATAGGAATGGTAGGTTGGGTTTAGGCACAGCTTCATATTTCCACGTGCCAATGCCATCTTTT
260 TCGATAGG-GTGGTAGG-TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT-TTTT
18276914 ATGGCTTGTAAATTCATA-ACATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
322 ATGGCTTGTAAATTCATACA-ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
18276978 CGTTTTCTATTTTTCATGATTTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGG
386 CGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * *
18277043 AAAGAGTTTTTGCCCCCAAACTTCGTAGACGTGATTCTTTGTATTTTTTTTGGCATGCACAAAAA
450 AAAGA-TTTTTGGCCCCAAACTTGGTAGACGTGA-TCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
18277108 AATTTAGCT-AAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
513 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
18277172 GACAATTTAATGGCTACTAGCAGCAAACCTGT-AAATCTCAAATGCCCTTTAAGGGGTGTGAGTT
578 GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTT
* * * * *
18277236 CTC-AGG-TTAAT-AAGGATAGGGGGCAAATATAACGGCCAAGTACCAGTACCGCATCGCACATC
643 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-CATCGCACATC
** * ***
18277298 ATGT-CGCACACCCCCTCGGCCCCCCGATCACCGAAACCTCAAATGCTATC-GTCAGGTTCTCCG
707 ATGTGCGCACACCCCC-CGGCCCCCCGATCGTCG-AACC-CCAATGCCGCCGGTCAGGTTCTCC-
* * *
18277361 GTGAATGCTCCGACGATGGTG-CCCGACGAA-AAAACATGCAGC-TCAGCCAACATGCCCAGCCC
768 --G--TG---CGACGATGGTGCCCCGACGAAGAAAA-ATGCGGCACCAG-C-ACATGCCGAGCCC
*
18277423 AACAT-TGCTGCCGCAACCCTTGGTTCGCGGTTCGATCTTAGACTGTGAATGAACTCCATTATGC
823 AGCATGTGCTGCCGCAACCC-TGG-T--C-G-TCGATC-T---C--TG-ATG-ACTCCA-TATGC
18277487 T
873 T
* * *
18277488 TAGACTGCGGAATGAACTCCTTATGGACTAAGTCAACCCACGAAACGAGCG-GCGGGTGCTCCA-
1 TAGACTG-GGAATGAACTCCGTAT-GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CAG
* * * * * * *
18277551 CCGCCCAGAAGGGTGGGAT-C-CAAGTC-GGGATCGG-TCGGGTACCCCTCTGC-TGATGCCGGA
63 CTG-GCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCC-GA
* * * * *
18277611 TCTTGCTGCGCAACCCTCCGGTTTGGTTCGATCTTAAGACTGGG-ATGGACTCCGT-TGCCTACG
125 TCCTGCTACCCAACCCT-CGGTCTGGTTCGATCTT-AGACTGGGAATGAACTCCGTATGCCTA--
* * * * *
18277674 CGCCAGT-GATGAACACGAACGGGCGGACAGGCCAGGCGATTGGGCACTATCACTGGCCAGAGAG
186 AGCCAATCGATGAA-ACGAA-----GG-CAGG-CA-G-G-TCGGGCACTA-CGCCGGCCAGAGAG
* * * * *
18277738 ATGGGCATGCGTAAGTCGTGGATCG-TAGGGTAGTAGGTTGGGTTTAGGGCGACATCGTCATATT
239 ACGGG-ATGCGCAAGCCGTGGATCGATAGGGTGGTAGG-TGGGTTTA-GGC-ACATCTTCATATT
* * *
18277802 TCTGCATGCCAATGTCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTG
300 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
18277867 AAGTTTCATGGC-AGACGACTCG-TTTCTAATTTTCACGATTTATGAAACTTATTGCGGTTCGAG
365 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAG
* * * *
18277930 ATTTTTTAAAATTTTTTC-GAAGGATTTTTGGGCCC-ACCTTGGTAGACGTGATCCTTATATTTT
430 ATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTT
* *
18277993 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTTGTGACCATTTG
494 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTT-
* *
18278058 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAAT
557 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAAT
*
18278123 GCTC-TTAAGGGGCCTGGCCTTGAAGTTTCTCGAGGTATTGATGAGGGATAGGGGCCCAAGTATA
622 GCTCTTTAAGGGG--T-G---TG-AG-TTCTCGAGGT-TTGATGAGGGATAGGGGGCCAA-TATA
* *
18278187 AGGGGCCAAGTACTTAGCGACCCATCGCACATCATGATGCCGCACACCCCACGGCCCCCCCGAAT
677 A-GGGCCAAGTAC-CAGC-ACCCATCGCACATCATG-TG-CGCACACCCCCCGG-CCCCCCG-AT
* * *
18278252 ACGTCGGACACCCAATGCTGTCGGTCTAGGTTCTCCGGCGATGCTTCCGACGATGGTG-CCCGAC
735 -CGTCGAAC-CCCAATGCCGCCGGTC-AGGTTCT-C--CG-TG----CGACGATGGTGCCCCGAC
* * * *
18278316 AAAGAAAAATGAGGCACCAGCACATGCTCGAGCCCAGTATGTGCTACCGCAACCC---TCG--G-
789 GAAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAACCCTGGTCGTCGA
*
18278375 TC-C-G--G--TCC-GAT-CT
853 TCTCTGATGACTCCATATGCT
* * * * *
18278388 TAGACTGGGAATTAACTCTGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG-TC
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-
* * * * * * *
18278452 GGCCAGAGGGGCGGGATGTGTAAGACGGGGATC-GATCGGGTCCCCCTCTGCATGCTACCGATCT
65 GG-CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
18278516 TGCTGCTACAACCTTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
128 TGCTAC-CCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18278581 CCGACGAAACGAGGGGGCAGGCAGGCAGG-CGGGCACTACGCCAGCCAGAGAGACGAGATGCGCA
192 TCGATGAAACGA------AGGCAGGCAGGTCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
18278645 AGCCGTGGATCAATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCGTGGCAATGCC
251 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
18278710 ATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
18278775 TGACTCGTTTTCTATTTGTCAC-AGTTTTTGAAACTTTTTGCGGTTAGGGAATTTTTAAAATTTT
381 CGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
** * * * * *
18278839 TTCTAAAAGAGTTTTGGCCTCAAACATGGTAGACGTGAGCCTTGTATTTTTGTTGGCATGCATAA
445 TTCGGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
18278904 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18278969 TCAGACACTTTAATGGCTAC-AGCCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGT
575 TCAGACACTTTAATGGCTACTAG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGT
*
18279033 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCCCCCATCGCA
638 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
18279098 CATCATGTGTGCACACCCCCTCCGGCCCCCCCGATCGCCTGAACCCCAATGCCGTCGGTCAGGTT
703 CATCATGTGCGCACA-CCCC-CCGG-CCCCCCGATCGTC-GAACCCCAATGCCGCCGGTCAGGTT
* ** *
18279163 CTCCGGCGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGGGGCACCAGCACATGCCGGAGC
764 CT-C--CG-TG---CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC-GAGC
* * * *
18279228 CCAACATGTACTACCGTAACCCT
821 CCAGCATGTGCTGCCGCAACCCT
18279251 CGTCCAGTCT
Statistics
Matches: 3739, Mismatches: 445, Indels: 494
0.80 0.10 0.11
Matches are distributed among these distances:
856 37 0.01
857 1 0.00
858 43 0.01
859 3 0.00
860 1 0.00
861 1 0.00
866 25 0.01
867 1 0.00
868 39 0.01
869 1 0.00
870 3 0.00
871 3 0.00
872 7 0.00
873 2 0.00
874 3 0.00
875 3 0.00
876 3 0.00
877 42 0.01
878 241 0.06
879 115 0.03
880 67 0.02
881 115 0.03
882 108 0.03
883 172 0.05
884 218 0.06
885 184 0.05
886 180 0.05
887 108 0.03
888 42 0.01
889 167 0.04
890 263 0.07
891 59 0.02
892 109 0.03
893 155 0.04
894 174 0.05
895 169 0.05
896 60 0.02
897 28 0.01
898 64 0.02
899 34 0.01
900 11 0.00
901 27 0.01
902 61 0.02
903 26 0.01
904 48 0.01
905 28 0.01
906 20 0.01
907 98 0.03
908 29 0.01
909 36 0.01
910 77 0.02
911 42 0.01
912 1 0.00
913 2 0.00
914 2 0.00
915 5 0.00
916 3 0.00
917 2 0.00
918 5 0.00
919 13 0.00
920 5 0.00
921 11 0.00
922 17 0.00
923 4 0.00
924 4 0.00
925 17 0.00
926 13 0.00
927 16 0.00
928 44 0.01
929 21 0.01
931 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (873 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTG
GCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
TACCCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGA
TGAAACGAAGGCAGGCAGGTCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAT
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCCGATCGTCGAACCCCAATGCCGCCGGTCAGGTTCTCCGTGCGACGATGGT
GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAACCCTGG
TCGTCGATCTCTGATGACTCCATATGCT
Found at i:18277511 original size:27 final size:27
Alignment explanation
Indices: 18277459--18277512 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
18277449 GCGGTTCGAT
*
18277459 CTTAGACTGTGAATGAACTCCATTATG
1 CTTAGACTGGGAATGAACTCCATTATG
18277486 CTTAGACTGCGGAATGAACTCC-TTATG
1 CTTAGACTG-GGAATGAACTCCATTATG
18277513 GACTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATTATG
Found at i:18280877 original size:26 final size:26
Alignment explanation
Indices: 18280847--18280899 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18280837 GTTGACTTAG
*
18280847 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACAGAGTTCATTGCC-AGTCTAA
*
18280873 GCATATAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
18280899 G
1 G
18280900 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCAGTCTAA
Found at i:18282981 original size:901 final size:881
Alignment explanation
Indices: 18280310--18292324 Score: 12459
Period size: 901 Copynumber: 13.5 Consensus size: 881
18280300 NNNNNNNNNN
** * * * *
18280310 TTTCAAATGGTCACAAAATCTTGTACACCACG-GGTTTTGGCTGAATTTTTTTTATGCATGACAA
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
* *
18280374 -AAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCC-TCTCGAAAAAATTTTAACA
65 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CGAAAAAATTTTAAAA
** * * * * * *
18280437 AATTTCAAACTGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTTGTCTTGCCATGAAA
129 AATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
18280502 CTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTAGAAGCCATAAAAAATGGCATTGGCATG
194 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACG
* * * * *
18280566 TACAAATATGATGATATGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
258 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
18280631 CTCTCTAGCCGGCGTAGTGCCTG-C-CCGCCCACCCGCTCGTTTCATCGATTGGCTTAGGCATAC
323 CTCTCTGGCC-GCGTAGTGCCCGCCTCCG-CC-CCCTC-CGTTTCATCGGTTGGCTTAGGCATAC
* * * * * * * *
18280694 GGAGTTCATTCCCAGTCTAAGATCGGGCCAGACCAAGGGTTACGGTAGCAGGATCGACAGCATGC
384 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGT
* * *
18280759 AGAGAGGGACCCGACCGATCCCCGGC-TAGCGCATCTC-ACCCCTCAT-GTCGACTGAGCGCCCG
449 AGAG-GGGACCCGACCGATCCCCGGCTTA-CGCATCCCGA-CCCTC-TGGCCGGCTGAGCGCCCG
* * **
18280821 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGTTC
510 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * *
18280886 ATTGCC-AGTCTAAGATCGGACCA-GACCGAGGGATGTGACAGCACATGCTAGGCTCGAGCATGT
575 ATT-CCTAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
*
18280949 GCTGGTGATGCATTTTTCTTCGTCGGGGCACCATTATCGGAGCATCACCGGAGAACCTGACCGGC
639 GCTGGTGA-GCATTTTTCTT--T----G---C-----CGGAGCATCACCGGAGAACCTGACCGAC
* ** * *
18281014 GACATTATGGTTCTGACGATCAGAGGGGCCGGGCGGGTGTGCGCACATGATGTGCGATGGGTGCT
689 GGCATTGGGGTTCCGACGATC-GGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
18281079 GGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
752 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
18281144 AAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
817 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
** * *
18281209 TTTCAAATGGTCACAAAATCTTGTACACCCCGAGTTTTTAGCTGAATTTTTTTGTCCACGCCAAC
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * * *
18281274 AAAAATACAAGGATCTCGTCTACCAATTTTGGGTCGAAAACTACTTCC-AAAAAAATTTAAAAAA
66 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * ** * *
18281338 TCCTGAACAGCAAAAAGTTTCGAAAATCGTGAAGAATAGAAAACGAAGTCGTCTTTGCCATGAAA
131 TCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACG-AGTCGTC-TTGCCATGAAA
* *
18281403 CATCATTGTGAAGGCTTAA-GGACCATTGTATGAATTTTACAAAGCCATAAAAATGGCATTGGCA
194 CTTCA-CGTGAAGGCTTAAGGGACCATTGTATGAA-TTTAC-AAGCCATAAAAATGGCATTGGCA
* * * *
18281467 CGCAGAAATATGAAGATGTACCTAAATCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCT
256 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
18281532 GTCTCTCTAGCCTGCGTAGTGCCCACTCGCCCACCCGCCCACCGCCCGCTCGTTTCGTCGGTTGG
321 GTCTCTCTGGCC-GCGTAGTG--C-C-CG-CC-TCCG----CC-CCCTC-CGTTTCATCGGTTGG
** * ** * * * ** *
18281597 CTTAGGCATACGGAGTTCATTCCCAACCTAAAATTGGACCAGATCGAGGGTTATGGCAGCAGGAC
373 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGAT
* * * ** * ***
18281662 CAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTAATCGGCTG
438 CGGCAGCACGTAGA-GGGGACCCGACCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGGCTG
* *
18281727 AGCGCCCGCACGCTCGTTTCATGGGTTGACTAAGGCATACGGAG----TT--CA-T-T--GC-T-
502 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *
18281780 ---AG-----T-C-A----AAGATAGGACC-GAACCGAGGGATGTGGCAGCACATGCTAGGCTCG
567 CGGAGTTCATTCCTAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
18281830 AGCATGTGCTGGTGACGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCT
632 GGCATGTGCTGGTGA-GCATTTTTCTT-------------T-GCCGGAGCATCACCGGAGAACCT
*
18281895 GACCGACGGCATTGGGGTTCCGATGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
682 GACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
* * *
18281960 GGGTGCTGGCACTTGGCCCTTATATTTGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCC
745 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
18282025 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
810 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
18282090 ACACCTT
875 ACACTTT
* * *
18282097 TTTCAAATGGTCACAAAATCTTGTATACCTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAA-
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * *
18282161 AGAAAATACAAGGATCACGTTTACCAATTTTGGGGTCAAAACTCCTTTCGAAATAATTTTAAAAA
66 A-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
18282226 ATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
130 ATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
18282291 TTCACGTGAAGGCTTAAGGGACCATTTGTATGAATTTTAC-AGCCATAAAAGATGGCATTGGCTC
195 TTCACGTGAAGGCTTAAGGGACCA-TTGTATGAA-TTTACAAGCCATAAAA-ATGGCATTGGC-A
* * *
18282355 CACAGAAATATGAAGATGCTGCTTAAAACCCAGCCTACCACCCTATTGATCCACGGCTTGCGCAA
256 CGCAGAAATATGAAGATG-TGCCT-AAACCCA-CCTACCACCCTATCGATCCACGGCTTGCGC-A
* *
18282420 TCCCGTCTCTCTGGCCG-GTAGTGCCCGCCTTCCGCCCCGCTTCCGTCTTCTTCAGTTGGCCTTA
317 TCCCGTCTCTCTGGCCGCGTAGTGCCCGCC-TCCGCCCC-C-TCCGT-TTCATCGGTTGG-CTTA
* * * *
18282484 -GTATAATGGAGTTCAATTCCCAGTCTAAGATTCAGACCGGACCAAGGGTTGTTGGTAGCAGGAT
377 GGCAT-ACGGAGTTC-ATTCCCAGTCTAAGA-TCAGACCGGACCAAGGGTTG-CGGCAGCAGGAT
** * ** * *
18282548 CACCAGCACGTAGAGGGGACGCCGGACCGATCAACAAGCTTACGCATCCCG-CCCTCCGGCCGAC
438 CGGCAGCACGTAGAGGGGAC-CC-GACCGATC-CCCGGCTTACGCATCCCGACCCTCTGGCCG-G
* * * **
18282612 CTGAGTTGCCTGCACGCTCGTTTCATGGGTTGACTTA-GCATACGTTGTTCATTCCCAGTCTAAG
499 CTGAG-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
18282676 C-TATGGAGTTCTATTGCTAGTCTAAAGATCGGACCAGCATCGAGGGTTTGCTGCAGCACATGCT
563 CATACGGAGTTC-ATTCCTAGTCT-AAGATCGGACCAGGACCGAGGG-TTGCGGCAGCACATGCT
*
18282740 AGGCTCGGGCATGTGCTGGTGAGCATTTTTCTTTGCCGGAGCATCACCGGAGAACCTGA-CGACG
625 GGGCTCGGGCATGTGCTGGTGAGCATTTTTCTTTGCCGGAGCATCACCGGAGAACCTGACCGACG
*
18282804 GCATTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
690 GCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
18282869 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
753 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
18282934 AGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
818 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
18282998 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
18283063 AAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTTTAAAAAA
66 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
18283128 TCCTGAACCGCATAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
131 TCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
18283193 TCACTTGATGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
196 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
18283257 AAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
261 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
18283322 TCTGGCCAGCATAGTGCCCGCCCGCCCGCCCACT-CATTTCATCGGTTGGCTTAGGCATACGGAG
326 TCTGGCC-GCGTAGTGCCCG-CC-TCCGCCCCCTCCGTTTCATCGGTTGGCTTAGGCATACGGAG
* * * *
18283386 TTCATTCCCAGTCTAAGATTAGGCTGGACCAAGGGTTGCGGCAGCAGTATCGGCAGCACGTAGAA
388 TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG-A
* * * * * * *
18283451 GGCGACCCGATCGATCCCTGGCTTGCACATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
452 GGGGACCCGACCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
18283516 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCC-
517 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCT
* * *
18283580 AGTCTAAGATCAGACC-GGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTG
581 AGTCTAAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
18283644 ACACATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCTTTG
646 A-GCATTTTTC-T--T----------T-GCCGGAGCATCACCGGAGAACCTGACCGACGGCATTG
* * *
18283709 GGGTTCCAACGATCGGGAGGGCCGGGGGGTCTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
696 GGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
18283774 GCCCTTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGTATTT
760 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
18283839 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGAACACTTT
825 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
18283896 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
** * * *
18283961 AAAAATACGCGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAATATTTTAAAAAA
66 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
18284026 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA-AAAATGGGTCGTCTTGCCATGAAACT
131 TCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
18284090 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTAGCACGCAG
196 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
18284155 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTC
261 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * **
18284220 TCTGGCCGACGTAGTGACCGCCCGTCCGCTCGCCCACTCGTTTTGTCGGTTGGCTTAGGCATACG
326 TCTGGCCG-CGTAGTGCCCG-CC-TCCGC-C-CCCTC-CGTTTCATCGGTTGGCTTAGGCATACG
* ** * * * *
18284285 GAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTACGGCGGTAGGATCGGCAGCACGGA
385 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCAC-GT
* ** * * * *
18284350 AAAGGGGACCCGGTCGATCCCCGGCTTGCACATCCC-ACCTTTCTGGCCGACTGAGCGCCCGCAC
449 AGAGGGGACCCGACCGATCCCCGGCTTACGCATCCCGACC-CTCTGGCCGGCTGAGCGCCCGCAC
* *
18284414 ACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
513 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * *
18284479 CCTAATCTAAGATCAGATCA-GACCAAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTG-T-
578 CCTAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * * **
18284541 -CG-GCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACTTTACCGACGATAT
643 GTGAGCATTTTTCTT--T----G--------CCGGAGCATCACCGGAGAACCTGACCGACGGCAT
* *
18284604 TGGGGTTCTGACGATCGGGGGGGCCGAGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGT
694 TGGGGTTCCGACGATC-GGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
** **
18284669 ACTTGGCAATTATATTGGCCCCCTATCCCTCATCAAAAATCGAGAACTCACACCCCCTTAAAGAG
755 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
18284734 CATTTGAGTTTTTACAGGTTTGCTACCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTT
820 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
18284796 TTTCAAATGGTCACAAAATCTTCTACACTTTGAGTTTTTAGCTGAAGTTTTTTT-TGCATGCCAA
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
* * * *
18284860 CAAAAATACTAGGATCCCATCTACCAAGTTTGGGAG-CAAAACACCTTCCGAAAAAATTTTAAAA
65 CAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * *
18284924 AATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATAAAA
129 AATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
18284989 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
194 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * *
18285054 AGAAATTTGAAGATGTGCTTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTC
259 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
18285119 TCTCTGGCCGGTGTAGTGCCCG--TCCGCTCGCT-CGTTTCGTCGGTTGGCTTAGGCATACGGAG
324 TCTCTGGCC-GCGTAGTGCCCGCCTCCGCCCCCTCCGTTTCATCGGTTGGCTTAGGCATACGGAG
* ** * * ** **
18285181 TTCATTCCCAGTCTAAGATCACACCGGACTGAGGGTTACAGCAGCAGGATCGATAGCACACAGAG
388 TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGA-
* * * * *
18285246 GGGGACCCGACTGATCCCCGGCTTATGCATCTCGACCCTCTGGCCGGCTGAGCACCCGCATGCTC
452 GGGGACCCGACCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
18285311 ATTTTGTGGGTTGACTTAGGCATACGGAG----TT--CA---T-----T-C-----TCA----T-
517 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTA
*
18285351 -TCTAAGATCGGACC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGC
582 GTCTAAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-
** * * * * * * * *
18285414 CTCATTTTTC-TTCCTCGGGGCACCGTCACCGGTGAACCTGACCCG-CGGCACTCGAGTTCTGGC
646 AGCATTTTTCTTTGC-CGGAGCA---TCACCGGAGAACCTGA-CCGACGGCATTGGGGTTCCGAC
*
18285477 GATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATAT
706 GATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
18285542 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
770 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
18285607 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
835 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
18285654 TTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAAATTTTTTGTCCATGCCAAC
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
18285719 AAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAACTACTTCCAAAAAAATTTTAAAAAA
66 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
18285784 TCTCGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
131 TCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
18285849 TCACGTG-AGGC-TAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGACACGCAG
196 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
18285912 AAATATGAAGATGTGCCTAAACTCACCTACCGCCCTATTGATCCACGGCTTGCGCATCCCGTCTC
261 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
18285977 TCTGGTCAGCGTAGTGCCCGCCCACCCGTCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACG
326 TCTGG-CCGCGTAGTGCCCG-CC-TCCG-CC-CCCTC-CGTTTCATCGGTTGGCTTAGGCATACG
* * * * ** *
18286042 GAGTTCATTCCCAGTCTATGATCAGACCAGACCGAGGGTTGTGGCAGCAAAATTGGCAGCACGTA
385 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTA
* * * * * *
18286107 AAGGGAGACCAG-CCAATCCCCGACTTACGCAT-CCGACCCCTTTGGCCGGCTGAGCACCCGCAC
450 GAGGG-GACCCGACCGATCCCCGGCTTACGCATCCCGA-CCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
18286170 GCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCAATCCTAGTCTAAGCATATGGAGTTCATT
513 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * * * *
18286235 CCCAGTCTAAGATTGGATCA-AACCAAGGGTTGCGACAGCACATGTTGGGCTTGGGCATGTGCTA
578 CCTAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * ** * *
18286299 CTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
643 GTG-AGCATTTTTCTTTGCC--GG-AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG
*
18286364 ACGATCGGGGGTGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
704 ACGATCGGGGG-G-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
18286429 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
767 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
18286494 TATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
832 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
18286544 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
18286609 AAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
66 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
18286674 TCCCGAACCACATAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
131 TCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
18286739 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACGCAG
196 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
** *
18286804 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCTGTCTC
261 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
18286869 TCTGGCCGACGTAGTACCCGCCCGCCTGCCCGCCCGCT-TGTTTCGTCAGTTGGCTTAGGCATAC
326 TCTGGCCG-CGTAGT----GCCCGCCT--CCGCCCCCTCCGTTTCATCGGTTGGCTTAGGCATAC
* * * * * * *
18286933 GGAGTTCAATGCCAGTCTAAGAAT-AGATCGGACTAAGGGTTACGG-TGACAGGATCGACAGCAC
384 GGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCAAGGGTTGCGGCAG-CAGGATCGGCAGCAC
* * ** ** * * * * *
18286996 GCAGAAGGGGACCTGGTCGATCTTCGGCTTGCGCATCCC-ACCCCTCTGGCTGACTGAACGCTCG
447 GTAG-AGGGGACCCGACCGATCCCCGGCTTACGCATCCCGA-CCCTCTGGCCGGCTGAGCGCCCG
* ** * *
18287060 CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTCGGGCATGTGCTGGT
510 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AAGCA--TAC-GGA
** * * * *** **
18287125 GATGAATT--T-TTCT----TC--ACCGGGGCACC-A---TCGCCAAAGCATCA--CTGGAGAAC
571 G-TTCATTCCTAGTCTAAGATCGGACC-AGG-ACCGAGGGTTGCGGCAGCA-CATGCTGG-GCTC
* * * **** * ** *
18287175 ---C-TG-ACCGGCG-GCA-TTGGGGTT-CCGGCG-AT---CGG-G---GGGGCCG--GG----G
631 GGGCATGTGCTGGTGAGCATTTTTCTTTGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTG
* ** * ** * * ** **
18287218 GGGTGTGCGCAC-AT-GATGTG--GGATGG-GT--G--C-TG--GTAC--TTGGCCCTTATA-TT
696 GGGT-TCCG-ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * **** * *** ** ** * * *** * * *
18287268 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCA-CATTCC-C-TTAA---AGAGCATTTGAGAT
759 GG-CCCTTAT--AT--TGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
18287327 ------------TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
818 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
18287379 TTTCAAATCGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTCTTTT-TGCATGCCAA
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAA
* * *
18287443 AAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCCAAACTCCTTCCGAAAAAATTTTAAAAA
65 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * ** *
18287508 ATCCCGAACCGTAAAAAGTGTCAAAAATCATGAAAAATAGAAATTGAGTCGTCTTGCCACGAAAC
130 ATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
18287573 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTAGCACGCA
195 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * * *
18287638 GAAATATGAATATGTGCCTAAACCAACCAACCACCCTATCGATCCATGGCATGCGCATCCCGTCT
260 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
18287703 CTCTGGCCGACGTAGTACCCGCTCGCTCGCCCACC-CGCTTGTTTCGTCGGCTGGCTTAGGCATA
325 CTCTGGCCG-CGTAGTGCCCGC-CTC-CGCCC-CCTC-C--GTTTCATCGGTTGGCTTAGGCATA
* * * ** *
18287767 CAGAGTTCATTCCCAGTCTAAGAAT-AGATCAGACCAAGGGTTGCGGTGGCAGGATCGACAGCAC
383 CGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCAC
** * * * * * * * *
18287831 ACAGAAAGGGACCCGATCGATCCCCGACTTGCGCATCCC-ACCCCTTTGGCTGACTGAGCGCTCG
447 GTAG-AGGGGACCCGACCGATCCCCGGCTTACGCATCCCGA-CCCTCTGGCCGGCTGAGCGCCCG
* *
18287895 CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
510 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * * * *
18287960 ATTCCCAGTCTAAGATCAGACC-GAACCAAGGGTTACGGCAGCACAAGCTGAGCTTGGGCATGTG
575 ATTCCTAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
18288024 C---TG-GCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGAGAACCTGACCGGCCA
640 CTGGTGAGCATTTTTCTTTG-C-CGG-AGCATCACCGGAG-AAC--C--TG-ACC-GA-CGG---
* * * *
18288085 CATTGGGGTTCTGGCGATCGAGGGGGCCGACGGGGGTGTGCGCACATGATGTGTGATGGGTACTG
691 CATTGGGGTTCCGACGATCG-GGGGGCCG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * **
18288150 GTACTTGGCCATTATATTGGCCCCCTATCCCTCATTAAAAATCGAGAACTCACACCCCCTTAAAG
753 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
18288215 AGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTTTTTAAAATGGGGACACTTT
818 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * * *
18288279 TTTCAAATGGTCAAAAAATCTTGTACACTCCCAGTTTTTAGCGGAATTTTTTT-TCCATGCCAAA
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* ** *
18288343 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTTTGAAAAACTTTTAAAAAA
66 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * * *
18288408 TCCTGAATCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACA
131 TCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
18288473 TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGGCATAAAAATTGCATTGTCACTCAG
196 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
18288538 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTC
261 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
18288603 TCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCT-TGTTTCGTCGGTTGGCTTACGCATACGGAG
326 TCTGGCCG-CGTAGTGCCCG-CCTCC-GCCCCCTCCGTTTCATCGGTTGGCTTAGGCATACGGAG
* *** * * *
18288667 TTCATTCCCAGTCTAAGATCAGACCGGACAAAGGGTTGCGATGGTAGGATCGACAGCATGTAGAA
388 TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG-A
* * * * *
18288732 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACACTT
452 GGGGACCCGACCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
18288797 GTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
517 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTA
* *
18288862 GTCTAAGATCAGA-CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
582 GTCTAAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-
* * * **
18288926 CA-CATTTTTCTTCTTCGGGGCACCATCACCGAAGCATCGTTGGAGATCCTGATAGACGGCATTG
646 -AGCATTTTTCTT-TGC-CGG-AGCATCACCG--G-A------GA-A-CCTGACCGACGGCATTG
* * * *
18288990 AGGTTCCGACGATCGGGGGGGCCGAGGGGGGGTGTGCACATATGATGTGCGATGGGTACTGGTAC
696 GGGTTCCGACGATC-GGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* **
18289055 TTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATCGAGAACTCACA-CCCCTTAAAGAGCA
757 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
18289119 TTTGAGATTTTACAGGTTTGCTTCCTGTAGCCATTAAAGTTTTTGAAATGGGGACACTTT
822 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
18289179 TTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAA
1 TTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
18289243 -AAAGAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
65 CAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * ** *
18289307 AATCTCGGACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAATTGAGTCATCTTGCCATGAAA
129 AATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
18289372 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACGT
194 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * *
18289437 AGAAATAATTAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
259 AGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
18289502 CTCTCTGGCCGATGTAGTACCTGCCCGCCCGCCCGCCCGCT-TGTTTCATCGGTTGGCTTATGCA
323 CTCTCTGGCCG-CGTAG----TGCCCG-CC-TCCGCCCCCTCCGTTTCATCGGTTGGCTTAGGCA
* * ** * * **
18289566 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTGGTAGGATCGACAATA
381 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCA
** * * * * **
18289631 CACAGAAGGGGACCCGATCGATCCCCGGCTTACGCTTCCCGCCCCTCTGGTCAACTGAGCGCCCG
446 CGTAG-AGGGGACCCGACCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGGCTGAGCGCCCG
* * *
18289696 CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTC
510 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * ** * *
18289761 ATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTACGATAGCACATGCTGGGCTTGGACATGTG
575 ATTCCTAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* ** *
18289825 CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGATCCTGACCGACG
640 CTGGTG-AGCATTTTTCTT--T----G--------CCGGAGCATCACCGGAGAACCTGACCGACG
* * ** * *
18289890 ACATTGAGGTTCCGGTGATCGGGGGGGCCGAGGGGGTGTGTGCGCAGATGATGTGCGATGGGTAC
690 GCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGG-GTGTGCGCACATGATGTGCGATGGGTGC
* ** *
18289955 TGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATTGAGAACTCACACCCCCTTAA
751 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
18290020 AGAGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTTTTTGAAATGGGGACACTT
816 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
18290085 T
881 T
* * * *
18290086 TTTCAAATGGTCAGAAAATCTTGTACACTCCGAGTTTTTAGCTGAA-TTTTTTGTCCATGCCAAA
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
18290150 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCTAAAAACTTTTAAAAAA
66 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** * * * **
18290215 TCTTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGA
131 TCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * * *
18290280 TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGGCAGAAAAATCGCATTGTCACTCAG
196 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
18290345 AAATATGAAGATGTGCCTAAACCCACCTACTAGCCTATCGATCCACGGCTTGCGCATGCCGTCTC
261 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * * *
18290410 TCTGGTCGACGCAGTGCCCAACCGCCCGCCCGCT-CATTTCATTGGTTGGCTTAGGCATACGGAG
326 TCTGGCCG-CGTAGTGCCC-GCC-TCCGCCCCCTCCGTTTCATCGGTTGGCTTAGGCATACGGAG
* * * ** * *
18290474 TTCATTCCCAGTCTAAGAT-TGAATCGAACTGAGGGTTGCGGCAGCAGGATCGACAGTACGTAGA
388 TTCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGA
* * * * *
18290538 GGGGTCCC-AGCCGATACCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCT
452 GGGGACCCGA-CCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACGC-
* ** * *
18290602 TTGTTTCGTTTGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCC
515 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * * * *
18290667 CAATATAAGATCAGATC-GGATCGAGGGTTGCGGTAGCACATACTAGGCTCGGGCATGTGCTGGT
580 TAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * *
18290731 GCTGCATTTTTCTTT-CTCGGGGCACCATCGTCGGAGAACCTAACC-AGTGGCATTGGCGTTCCG
645 G-AGCATTTTTCTTTGC-CGGAGCATCA-C--CGGAGAACCTGACCGA-CGGCATTGGGGTTCCG
** *
18290794 --G-T-----GATCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
704 ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
18290851 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGTGCATTTGAGATATTA
769 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
18290916 CAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTT
834 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
18290964 TTTCAAATGATCACAAAATCCTGTACACTTTGAGTTTTTAGTTGAATGTTTTTGTGCATGCCAAC
1 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
18291029 AAAAATACAAGGATCCCATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAA
66 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* ** * *
18291094 TCCTGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
131 TCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
18291159 TCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCTATAAAAATGGCATT-GCACGCAG
196 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
18291223 AATTATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGGATCCCGTCTC
261 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
18291288 TCTGGCCGGCGTAGTGCCCGCCCGCCTGCCTGCCCACTCGCTCATTTCGTCGGTTGACTTCGGCA
326 TCTGGCC-GCGTAGT----GCCCGCCT-CC-GCCC-C-CTC-CGTTTCATCGGTTGGCTTAGGCA
* * * * * * *
18291353 TACGAAGTTCATTCCCAGTATAAGATC-GCACC-AAACAGAGGGTTGCAGTAGCAGGATCGGTAG
381 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCA-AGGGTTGCGGCAGCAGGATCGGCAG
* * * * * * *
18291416 CACGCAGAGGGGGACCCGGCCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTTAGCGCC
444 CACGTAGA-GGGGACCCGACCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGGCTGAGCGCC
* * * *
18291481 CGCACGCTCGTTTTGTGGGTTGACTTAGGCACACAGAGTTCATTCCCAGTCTAAGCATATGGAG-
508 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * * *
18291545 TCATTCCCAGTCTAACATCGGA-CTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTGGACTTG
573 TCATTCCTAGTCTAAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * * * *
18291609 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGAACCTGATCGACGGCACTGGGG
638 TGCTGGTG-AGCATTTTTCTTTGCCGGAGCATCA-C-C-GGAGAACCTGACCGACGGCATTGGGG
** * *
18291674 TTCCGGTGATCGGGGGTGTCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGC
699 TTCCGACGATCGGGGG-GCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
18291739 CCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTCA
762 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
** *
18291804 GATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGTCACTTT
827 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
18291859 TTTCAAATGGTCACAAAATCTTGTACACCGT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
1 TTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
18291923 -AAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAA
65 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** * * * * *
18291987 ATCTTGAACTGTAAAAAGTTTCAAAAATCATGGAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
130 ATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
18292052 TTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTA
195 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
18292117 GAAATATGATGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCT
260 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * ** *
18292182 CTCTGGTCGACGTAGTGCCCGCCCACCTGTCCTTCCGCT-CGTTTGGTCGGTTGGCTTAGCCATA
325 CTCTGGCCG-CGTAGTGCCCG-CCTCC-G-CC--CC-CTCCGTTTCATCGGTTGGCTTAGGCATA
* * ** *** * * * *
18292246 CGGAGTTCATTCCCAGTTTAAGATTAGATTGGATTGAGGGTTGTGACAGCAGTATCGACAGCACG
383 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACG
*
18292311 CAGAAGGGGACCCG
448 TAG-AGGGGACCCG
18292325 GTCGATCTCC
Statistics
Matches: 9486, Mismatches: 1189, Indels: 890
0.82 0.10 0.08
Matches are distributed among these distances:
830 5 0.00
831 12 0.00
832 4 0.00
833 3 0.00
834 3 0.00
835 545 0.06
836 8 0.00
837 4 0.00
839 5 0.00
840 7 0.00
841 3 0.00
842 4 0.00
843 4 0.00
844 2 0.00
845 2 0.00
846 2 0.00
847 10 0.00
848 15 0.00
850 6 0.00
851 4 0.00
852 11 0.00
853 6 0.00
855 1 0.00
856 126 0.01
857 15 0.00
858 341 0.04
860 9 0.00
861 34 0.00
862 16 0.00
863 80 0.01
864 85 0.01
865 2 0.00
866 2 0.00
867 50 0.01
868 5 0.00
869 3 0.00
870 2 0.00
871 6 0.00
872 18 0.00
873 5 0.00
875 3 0.00
877 6 0.00
878 265 0.03
879 187 0.02
880 6 0.00
881 15 0.00
882 28 0.00
883 61 0.01
884 35 0.00
885 178 0.02
886 224 0.02
887 156 0.02
888 480 0.05
889 219 0.02
890 400 0.04
891 138 0.01
892 239 0.03
893 260 0.03
894 223 0.02
895 564 0.06
896 25 0.00
897 116 0.01
898 501 0.05
899 424 0.04
900 674 0.07
901 1057 0.11
902 368 0.04
903 104 0.01
904 11 0.00
905 74 0.01
906 594 0.06
907 123 0.01
908 7 0.00
909 3 0.00
910 4 0.00
911 3 0.00
913 1 0.00
914 168 0.02
915 13 0.00
916 19 0.00
917 42 0.00
918 2 0.00
919 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (881 bp):
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGCGTAGTGCCCGCCTCCGCCCCCTCCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGG
ACCCGACCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCT
AAGATCGGACCAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGAGCAT
TTTTCTTTGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
Found at i:18283565 original size:26 final size:26
Alignment explanation
Indices: 18283535--18283587 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18283525 GTTGACTTAG
18283535 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18283561 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18283587 G
1 G
18283588 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18284473 original size:26 final size:26
Alignment explanation
Indices: 18284437--18284489 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18284427 GTTGACTTAG
* *
18284437 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
18284463 GCATACAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
18284489 G
1 G
18284490 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:18286229 original size:26 final size:26
Alignment explanation
Indices: 18286193--18286245 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18286183 GTTGACTTAG
*
18286193 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* *
18286219 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
18286245 G
1 G
18286246 ATTGGATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:18287942 original size:835 final size:835
Alignment explanation
Indices: 18286333--18287944 Score: 2724
Period size: 835 Copynumber: 1.9 Consensus size: 835
18286323 CACCATCGCC
* *
18286333 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTGTCGGGGGGGTGTGCGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
18286398 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
18286463 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
18286528 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTT
* *
18286593 TTTTGTGCATGCCAACAAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
261 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * * *
18286658 AAAAAATTTTAAAAAATCCCGAACCACATAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTC
326 AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTGTCAAAAATCATGAAAAATAGAAAATGAGTC
*
18286723 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
391 GTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
18286788 TGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGC
456 TGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCTATCGATCCATAGC
* * *
18286853 TTGCGCATCCTGTCTCTCTGGCCGACGTAGTACCCGCCCGCCTGCCCGCCCGCTTGTTTCGTCAG
521 ATGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCTGCCCACCCGCTTGTTTCGTCAG
* * * * *
18286918 TTGGCTTAGGCATACGGAGTTCAATGCCAGTCTAAGAATAGATCGGACTAAGGGTTACGGTGACA
586 CTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAGAATAGATCAGACCAAGGGTTACGGTGACA
* * * * ** *
18286983 GGATCGACAGCACGCAGAAGGGGACCTGGTCGATCTTCGGCTTGCGCATCCCACCCCTCTGGCTG
651 GGATCGACAGCACACAGAAAGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCTG
18287048 ACTGAACGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTCGG
716 ACTGAACGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTCGG
18287113 GCATGTGCTGGTGATGAATTTTTCTTCACCGGGGCACCATCGCCAAAGCATCACT
781 GCATGTGCTGGTGATGAATTTTTCTTCACCGGGGCACCATCGCCAAAGCATCACT
* *
18287168 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
* *
18287233 ATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
**
18287298 CTCACATTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
18287363 GAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTT
* * *
18287428 CTTTT-TGCATGCCAAAAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCCAAACTCCTTCC
261 -TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
** *
18287492 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTGTCAAAAATCATGAAAAATAGAAATTGAGT
325 GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTGTCAAAAATCATGAAAAATAGAAAATGAGT
18287557 CGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
18287622 ATGGTATTAGCACGCAGAAATATGAATATGTGCCTAAACCAACCAACCACCCTATCGATCCATGG
455 ATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCTATCGATCCATAG
*
18287687 CATGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCTCG-CTCGCCCACCCGCTTGTTTCGTC
520 CATGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCT-GCCCACCCGCTTGTTTCGTC
* * * *
18287751 GGCTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATAGATCAGACCAAGGGTTGCGGTGG
584 AGCTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAGAATAGATCAGACCAAGGGTTACGGTGA
*
18287816 CAGGATCGACAGCACACAGAAAGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTTTGGC
649 CAGGATCGACAGCACACAGAAAGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGC
*
18287881 TGACTGAGCGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
714 TGACTGAACGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
18287945 AAGCATACAG
Statistics
Matches: 723, Mismatches: 52, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
834 2 0.00
835 717 0.99
836 4 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (835 bp):
GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTT
TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTGTCAAAAATCATGAAAAATAGAAAATGAGTC
GTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCTATCGATCCATAGC
ATGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCTGCCCACCCGCTTGTTTCGTCAG
CTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAGAATAGATCAGACCAAGGGTTACGGTGACA
GGATCGACAGCACACAGAAAGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCTG
ACTGAACGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTCGG
GCATGTGCTGGTGATGAATTTTTCTTCACCGGGGCACCATCGCCAAAGCATCACT
Found at i:18287957 original size:26 final size:26
Alignment explanation
Indices: 18287921--18287973 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18287911 GTTGACTTAG
*
18287921 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18287947 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18287973 G
1 G
18287974 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18288852 original size:26 final size:26
Alignment explanation
Indices: 18288816--18288868 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18288806 GTTGACTTAG
*
18288816 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18288842 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18288868 G
1 G
18288869 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18289715 original size:906 final size:902
Alignment explanation
Indices: 18287108--18292324 Score: 6720
Period size: 906 Copynumber: 5.8 Consensus size: 902
18287098 CATTCCCAGT
** * * * * **
18287108 CTCGGGCATGTGCTGGTGATGAATTTTTCTTCACCGGGGCACCATCGCCAAAGCATCACTGGAGA
1 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACC-GAGCATCGTTGGAGA
*
18287173 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
65 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
* * * **
18287237 GGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
130 GCGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATTGAGAACTCA
** *
18287302 CATTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
195 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAA
* *
18287367 TGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACT-TCGACTTTTTAGCTGAATTTCTT
260 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCT-GAGTTTTTAGCTGAATTT-TT
* * * *
18287431 TT-TGCATGCCAAAAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCCAAACTCCTTCCGAA
323 TTGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * * *
18287495 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTGTCAAAAATCATGAAAAATAGAAATTGAGTCGT
388 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
*
18287560 CTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
453 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * * *
18287625 GTATTAGCACGCAGAAATATGAATATGTGCCTAAACCAACCAACCACCCTATCGATCCATGGCAT
518 GCATT-GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
18287690 GCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCTCGCTCGCCCACCCGCTTGTTTCGTCGGCT
582 GCGCATCCCGTCTCTCTGGCCGACGTAGT-CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* *
18287755 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAAT-AGATCAGACCAAGGGTTGCGGTGGCAG
646 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCAAGGGTTGCGGTGGCAG
* * * * * * *
18287819 GATCGACAGCACACAGAAAGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTTTGGCTGA
710 GATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
*
18287884 CTGAGCGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
775 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * *
18287949 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGCACAAGCTGAG
840 ATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
18288012 CTTGGGCATGTGC---TG--GCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGAGA
1 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACC-GAGCATCGTTGGAGA
* ** * * *
18288072 ACCTGACCGGCCACATTGGGGTTCTGGCGATCGAGGGGGCCGACGGGGGTGTGCGCACATGATGT
65 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
* * *
18288137 GTGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATTAAAAATCGAGAACTCA
130 GCGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATTGAGAACTCA
* * *
18288202 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTTTTTAAAA
195 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAA
* ** *
18288267 TGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTCCCAGTTTTTAGCGGAATTTTTTT
260 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTTTTTT
* *
18288332 -TCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTTTGAAAA
325 GTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * *
18288396 ACTTTTAAAAAATC-CTGAATCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAAGAGTCGTC
390 AATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
* * * *
18288460 TTGCCATGAAACATCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGGCATAAAAATTG
454 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
18288525 CATTGTCAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
519 CATTG-CACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
18288589 GCACATCCCGTCTCTCTGGCCGACGTAGT---GCCCGCCCGCCTGCCCGCTTGTTTCGTCGGTTG
582 GCGCATCCCGTCTCTCTGGCCGACGTAGTCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
18288651 GCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAAAGGGTTGCGATGGTAGGA
647 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTGGCAGGA
* *
18288716 TCGACAGCATGTAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
712 TCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* *
18288781 GAGCGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGCAT
777 GAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
**
18288846 ATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
842 ACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
18288907 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCTTCGGGGCACCATCACCGAAGCATCGTTGGAGA
1 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCG-AGCATCGTTGGAGA
* ** * * * *
18288972 TCCTGATAGACGGCATTGAGGTTCCGACGATCGGGGGGGCCGAGGGGGGGTGTGCACATATGATG
65 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGA-GGGGGGTGTGCGCACATGATG
*
18289037 TGCGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATCGAGAACTC
129 TGCGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATTGAGAACTC
* * *
18289102 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCTGTAGCCATTAAAGTTTTTGAA
194 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAA
18289166 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTTTTT
259 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTTTTT
* *
18289231 TGTCCATGCCAAAAAGAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
324 TGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
18289296 AAATTTTAAAAAATCTCGGACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAATTGAGTCATC
389 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
18289361 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
454 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
18289426 CATTAGCACGTAGAAATAATTAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
519 CATT-GCACGTAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
18289491 GTGCATCCCGTCTCTCTGGCCGATGTAGTACCTGCCCGCCCGCCCGCCCGCTTGTTTCATCGGTT
582 GCGCATCCCGTCTCTCTGGCCGACGTAGT-CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
18289556 GGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTGGTAGG
646 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTGGCAGG
** * * * * * *
18289621 ATCGACAATACACAGAAGGGGACCCGATCGATCCCCGGCTTACGCTTCCCGCCCCTCTGGTCAAC
711 ATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
*
18289686 TGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
776 TGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
** * **
18289751 TACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCACATGCTGGG
841 TACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
18289813 CTTGGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
1 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACC-GAGCATCGTTGGAGA
* * * * *
18289878 TCCTGACCGACGACATTGAGGTTCCGGTGATCGGGGGGGCCGAGGGGGTGTGTGCGCAGATGATG
65 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGG-GTGTGCGCACATGATG
18289943 TGCGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATTGAGAACTC
129 TGCGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATTGAGAACTC
* * *
18290008 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTTTTTGAA
194 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAA
* *
18290073 ATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTCCGAGTTTTTAGCTGAA-TTTTT
259 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTTTTT
*
18290137 TGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCT-AA
324 TGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CTGAA
* * * * *
18290201 AAACTTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
388 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
** * * * *
18290266 CTTGCCATGAAAGATCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGGCAGAAAAATC
453 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
18290331 GCATTGTCAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTACTAGCCTATCGATCCACGGCT
518 GCATTG-CACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** * * *
18290395 TGCGCATGCCGTCTCTCTGGTCGACGCAGT---GCCCAACCGCCCGCCCGCTCATTTCATTGGTT
581 TGCGCATCCCGTCTCTCTGGCCGACGTAGTCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * ** **
18290457 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAATC-GAACTGAGGGTTGCGGCAGCA
646 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACCAAGGGTTGCGGTGGCA
* * * * * *
18290520 GGATCGACAGTACGTAG-AGGGGTCCC-AGCCGATACCTGGCTTACGCATCCCGCCCCTCTGGCC
709 GGATCGACAGCACGCAGAAGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * ** *
18290583 GGCTGAGCGCCTGCACGCTTTGTTTCGTTTGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
773 GACTGAGCGCCCGCACAC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
18290648 AGCATACAGAGTTCATTCCCAATATAAGATCAGA-TCGGATCGAGGGTTGCGGTAGCACATACTA
837 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCACATGCTG
18290712 GG
901 GG
*
18290714 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTTC-TCGGGGCACCAT---C--G--TC---GGAGA
1 CTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCATCGGGGCACCATCACCGAGCATCGTTGGAGA
* * * *
18290768 ACCTAACC-AGTGGCATTGGCGTTCCGGTGAT---------C--GGGGGGTGTGCGCACATGATG
65 ACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
* * * **
18290821 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
129 TGCGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATTGAGAACTC
* * * *
18290886 ACACCCCCTTAAAGTGCATTTGAGATATTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAA
194 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
18290951 ATGGGGACACTTTTTTCAAATGATCACAAAATCCTGTACACTTTGAGTTTTTAGTTGAATGTTTT
259 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTTTTT
* * * *
18291016 TGTGCATGCCAACAAAAATACAAGGATCCCATCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAA
324 TGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAA
* ** ** * *
18291080 AAAATTTAAAAAAATC-CTGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTG
388 AAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
* *
18291144 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCTATAAAAAT
452 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
18291209 GGCATTGCACGCAGAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTT
517 GGCATTGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
18291274 GCGGATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCTGCCCACTCGCTCATTTCGTC
582 GCGCATCCCGTCTCTCTGGCCGACGTAGT-CCCGCCCG-C--CC-GCCCGCCCGCTCGTTTCGTC
* * * * * *
18291339 GGTTGACTTCGGCATACGAAGTTCATTCCCAGTATAAGATC-GCACCA-AACAGAGGGTTGCAGT
642 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCA-AGGGTTGCGGT
* ** * * * *
18291402 AGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCTCGACTTGCGCATCCCGCCCCTCTG
705 GGCAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * *
18291467 GCCGGCTTAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCACACAGAGTTCATTCCCAGTC
770 GCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
** * * *
18291532 TAAGCATATGGAG-TCATTCCCAGTCTAACATCGGACTGGACCGAGGGTTGCAGCAGCACATGCT
835 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCT
18291596 GGG
900 GGG
* * * *
18291599 CTTGGACTTGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C--G---C--TGGAGAA
1 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGAGCATCGTTGGAGAA
* * * * * *
18291654 CCTGATCGACGGCACTGGGGTTCCGGTGATCGGGGGTGTCGA-GGGGGTGTGCACACATGATGTG
66 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTG
* * * **
18291718 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCAC
131 CGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATTGAGAACTCAC
* *
18291783 ACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTT-ATTGCCAGTAGCCATTAAAGTGTCTGAAA
196 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTT-CCAGTAGCCATTAAAGTGTCTGAAA
*
18291847 TGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACAC-CGTGAGTTTTTAGCTGAATTTTTT
260 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTC-TGAGTTTTTAGCTGAATTTTTT
* * *
18291911 TGTGCATGCC-AAAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
324 TGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * * *
18291975 AAATTTAAAAAAATCTTGAACTGTAAAAAGTTTCAAAAATCATGGAAAATAGAAAATGAGTCGTC
389 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
* *
18292040 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTAGAAGCCATAAAAATGG
454 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
18292105 CATTGGCATGTAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTG
519 CATT-GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * ** *
18292170 CGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCACCTGTCCTTCCGCTCGTTTGGTCGGTTG
583 CGCATCCCGTCTCTCTGGCCGACGTAGT-CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *** *** * *** *
18292235 GCTTAGCCATACGGAGTTCATTCCCAGTTTAAGATTAGATTGGATTGAGGGTTGTGACAGCAGTA
647 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTGGCAGGA
18292300 TCGACAGCACGCAGAAGGGGACCCG
712 TCGACAGCACGCAGAAGGGGACCCG
18292325 GTCGATCTCC
Statistics
Matches: 3799, Mismatches: 439, Indels: 163
0.86 0.10 0.04
Matches are distributed among these distances:
877 1 0.00
878 262 0.07
879 182 0.05
881 1 0.00
882 4 0.00
884 4 0.00
885 114 0.03
886 131 0.03
887 53 0.01
889 1 0.00
890 28 0.01
891 85 0.02
892 3 0.00
893 2 0.00
894 174 0.05
895 563 0.15
898 5 0.00
899 334 0.09
900 439 0.12
901 500 0.13
902 77 0.02
904 12 0.00
905 74 0.02
906 631 0.17
907 119 0.03
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (902 bp):
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGAGCATCGTTGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTG
CGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAAATTGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGCTGAATTTTTTTG
TCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTGGCAGGATCGA
CAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
Found at i:18289758 original size:26 final size:26
Alignment explanation
Indices: 18289722--18289774 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18289712 GTTGACTTAG
* *
18289722 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18289748 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18289774 G
1 G
18289775 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18298984 original size:26 final size:26
Alignment explanation
Indices: 18298945--18299000 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18298935 TGGGTTGACT
*
18298945 TAAGCATGCAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
* *
18298971 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
18298997 TAAG
1 TAAG
18299001 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:18299863 original size:26 final size:26
Alignment explanation
Indices: 18299834--18299889 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18299824 TGGGTCGACT
**
18299834 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
18299860 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
18299886 TAAG
1 TAAG
18299890 ATCGAACCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAGTC
Found at i:18300458 original size:878 final size:886
Alignment explanation
Indices: 18297980--18303239 Score: 6213
Period size: 891 Copynumber: 5.9 Consensus size: 886
18297970 TCCCGTGGCA
* * * * * *
18297980 CCCGGCTTGCGCATCCCGCCCCTCTGGCC-GACTAAACGCCTGCATGCTCGTTTCGTGGGTTGAC
1 CCCGGATTGCGCATCCCGCCCCTCTGGCCAG-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
* * * * *
18298044 CTAAGCATATGGAGTTCATTACCAAGTCTAAGCATTATTGGAGTTCATT-CCA-TCTAAGATTGG
65 TTAAGCATACGGAGTTCATT-CCCAGTCTAAGCA-TA-CGGAGTTCATTCCCAGTCTAAGA-TCG
* * **
18298107 ACTGGACCGAGGGTTGCGGCAAGCACATGCTGGTTTCGTGC-TGTGCTGGTG-CGACATTTTTCT
126 A--AGCCCGAGGGTTGCGGC-AGCACATGCTGGGCTCG-GCATGTGCTGGTGCCG-CATTTTTC-
* * * * *
18298170 TTC-GTCGGGGCACGATC-ACGGACATTGCCGGAGATCCTGACCGGCGGCATTGGGCTT-CGGTG
185 TTCACT-GGGGCACCATCGTC-GACA-T----GA-A-CCTGACCGGCGGCATTGGGGTTCCGGCG
* * * * **
18298232 ATCGAGGGG-C--GGGGGTGTGCACACATGATGTGCGCTGGCTGCTACTGACTTGGCCCTTATAT
241 ATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT-ACTTGGCCCTTATAT
*
18298294 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTAC
305 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
18298359 AGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAA
370 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
18298424 TCTTGTACAGTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCATG
435 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-GCATGCCAACAAAAATACAAGGATCACG
* * * *
18298489 TCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAATATTATAAAAAATCTTC-AACCGTAAAAA
499 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATC-CCGAACCGTAAAAA
* *
18298553 TTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAA
562 GTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
18298618 GGGACAATTGTATGACTTTACAAGCCAT-AAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
627 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
* * * *
18298682 CTAAACCCACCTACCACCCTATCGATCCATGGCATGCGCATCCCGTCTATCTGGCCGGCATAGTG
692 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* *
18298747 CCCGCCCGCTTGCCCAC-CCGCTCGTTTCGTCGGTTGTCTTAGGTATACGGAGTTCATTCCTAGT
757 CCCGCCCGC---CCC-CGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
** * * *
18298811 CTAAGATTGGA-TCGGACTGAGGGTTACGACAGCAAGATTGGCAGCACGCAGAGGGGGACCC-AG
818 CTAAGATCAGACT-GGACCGAGGGTTACGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGA-
18298874 TCGATC
881 TCGATC
* * * *
18298880 CCC-GACTTACGCATCCCGCCCCTCTGGTCAGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGAC
1 CCCGGA-TTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
* * *
18298944 TTAAGCATGCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACC
65 TTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GA--
* * ** * * **
18299009 GGACCGAGGGTTATGGCAGCACATGCTAGGCTCGGGCATGTGGTGGTGCCATATTTTTCTTCACT
127 AGCCCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCACT
* * * * *
18299074 GGGGCACCATCGTCGGAGCATCGCAGGAGAACCTAACTGGCGGTATTGGGGTTTCGGTGATCGGG
191 GGGGCACCATCGTC-GA-CAT-------GAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GG
* * *
18299139 GGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCC
246 GGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
18299204 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTT
311 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
18299269 GCTGCCAGTAGCCATTAATGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGT
376 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
18299334 ACACTTCGAGTTTTTAGCTG-A----------A-GCCAACAAAAATACAAGGATCACGTCTACCA
441 ACACTTCGAGTTTTTAGCTGAATTTTTTTGGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* *
18299387 AGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
506 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* *
18299452 ATCGTGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
571 ATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
18299517 ATATGAATTTACAAGCCATAAAAATGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCA
636 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCA
* *
18299582 CCTACCACCC-ATTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCG
701 CCTACCACCCTA-TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * **
18299646 CCCCCCGCCGCTCATTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCTAGTCTAAGATTGGA
765 -CCCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
* * ***
18299711 CTGGACCGAGGGTTACAGTAGCAGGATCAACAGCACGCAGAGGGGGACCCGATCGATC
829 CTGGACCGAGGGTTACGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATC
* * * * * * ** * *
18299769 CCCAGATTACGCATCCCACCCTTCTGGCCAGCTGAGCACCCGTACGCTAATTTCGTGGGTCGACT
1 CCCGGATTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
**
18299834 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAA-CC
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAGCC
* *
18299898 CGAGGGTTGCGGCAACACATGCTGGGCTCGGAATGTGCTGGTGCCGCATTTTT-TTCACTGGGGC
131 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGC
*
18299962 ACCATCGTCGA-AT-AACCTGACCGACGGCATTGGGGTT-CGGCGATCGGGGGGCC-AGGGGGTG
196 ACCATCGTCGACATGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGTG
*
18300023 T-CGCACATGATGTGCG-TGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAA
261 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
18300086 ACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
326 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
18300150 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
391 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * **
18300215 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCCCATCTACCAAGTTT-GAACCAAA
456 AGCTGAATTTTTTTG-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * *
18300279 ACTCCTTCTGAAAAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
520 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAA
** * * *
18300344 AAAACGAGTCGTCAGGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGCATGAATTTAAAA
585 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
18300409 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGAGCCTAAACCCATCTACCACCCTATC
650 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
18300474 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-G-G--TGCCCG----C-CTGCTCGTT
715 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCGCTCGTT
* * ** * * **
18300530 TCGTCTGTTGGGTTAGGCATACGTTGTTCATTCCCAGTCTAAGATCAGA-TCGAAAAGAGGGTTA
780 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACT-GGACCGAGGGTTA
* * **
18300594 TGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGCCGATC
844 CGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATC
* * * * * *
18300637 CCCGGCTTGCGCATCCCACCTCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACC
1 CCCGGATTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * *
18300702 TAAGCATGCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTCCCAGCCTAAGATCGAACCA
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-A--A
* * * * * *
18300767 GACCGAGGGTTGCAGCACCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCG
128 GCCCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCACTG
* * *
18300832 GGGCACCATCGTCGAAGCATCGCAAGAGAACCTGATCGGCGGTATTGGGGTTCCGACGATCGGGG
192 GGGCACCATCGTCG-A-CAT-------GAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGG
* * *
18300897 GGGCCGAGGCGGTGTGCGGACATGATGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCC
247 GGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
18300962 TTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG
312 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
**
18301027 CTGCCAACAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
377 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
18301092 CACTTCGAGTTTTTAGCTG-A----------A-GCCAACAAAAATAAAAGGATCACGTCTACCAA
442 CACTTCGAGTTTTTAGCTGAATTTTTTTGGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
18301145 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACC-TAAAAAGTTTCAAAAA
507 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * *
18301208 TTGTGAAAAATAAAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGCCTTAAGGGACCATTG
572 TCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * **
18301273 TATGAATTTACAAGCCATAAAAAAGGCATTGGCACGTAGAAATATGAAGATTTGCCTAAACCTGC
637 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* *** *
18301338 CTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTCATCGGCGTAATGCCCGCCCGCC
702 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * *
18301403 CGTCCGCCTGCTCATTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
767 C--CCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
* * * * * *
18301468 CCGGACCGAAGGTTGA-GGCAGCAGGATTGGCAGCACACAGA-GGGGACCTGACCAATC
829 CTGGACCGAGGGTT-ACGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATC
* * * * * *
18301525 CTCGGCTTGTGCATCCCGCCCCTCTGGCC-GATGAGCGCCCACACGCTCGTTTCGTGGGTTGACT
1 CCCGGATTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* *
18301589 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGACCAG
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA--AG
* * * ** *
18301654 ACCAATGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG--TTTTTCTTTGCCGG
129 CCCGAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCACTGG
* * * *
18301717 GGCACCATCG-CGAAGCATCGTCGGAGATACTGACCGGCGGTATTGGGGTTCCGGTGATCGAGGG
193 GGCACCATCGTCG-A-CA---T--GA-A-CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG
*
18301781 G--GTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
249 GCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
18301844 ATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGC
314 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGC
* * *
18301909 TTGCCAGTAGCCATTAAAGTTTC-GAAATGGGGACAC-TTTTTCAATTTGTCACAAAATCTTGTT
378 -TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG-T
* *
18301972 ACACTTC-AGGTTTTTAGCTGAATTTTTTTGGCATGCTAACAAAAAACACAAGGATCACGTCTAC
441 ACACTTCGA-GTTTTTAGCTGAATTTTTTTGGCATGCCAAC-AAAAATACAAGGATCACGTCTA-
* * * * **
18302036 CCAAGTTTGTGGCCAAAACTCCTTCCAAAAAAAATTTTTTAAAAATCCCCCAAACCACAAAAAAG
503 CCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAA-TTTTAAAAAAT--CCCGAACC-GTAAAAAG
*
18302101 TTTCAAAAAT-GTGAAAAAATAGAAAACGAGTCGTCTTGCCATG-AACTTCACGTG-AGAGC-TA
563 TTTCAAAAATCGTG-AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG-GCTTA
*
18302162 AGGGACCATTGTA-GAATTTACAACAGCC-TAAAAATGGCAACTGGCATG-AGAAATATGTAAGA
626 AGGGACCATTGTATGAATTTAC-A-AGCCATAAAAATGGC-ATTGGCATGTAGAAATATG-AAGA
* *
18302224 TGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCGTTGCGCATCTCCTCTCTCTCTGG-CG
687 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATC-CC-GTCTCTCTGGCCG
* * ** ** *
18302288 AC-CAGCTG-TGGCCCGGACCCGCCG-T--TATCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
749 GCGTAG-TGCCCGCCCGCCCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * *
18302348 CTAGTGTAAGATCCGACTGGATCAAGGGTTATGGCAGCAAGATCGACAGCATGCAGAGGGGGACC
813 CTAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATTGGCAGCACGCAGAGGGGGACC
* *
18302413 TGTTCGATC
878 CGATCGATC
* * * * * *
18302422 CTCGGGTTGCGCATCCTGCCCCTATGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
1 CCCGGATTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
*
18302487 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GA--A
* ** * * *
18302552 GACCGAGGGTTATGGCAGCACATGCTGGGCTCGAGCATATGCTGGTGCCACATTTTTCTTC-GTC
128 GCCCGAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCACT-
* * * * *
18302616 GGAGCATCA-C--CG-TA-GAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAG
191 GGGGCACCATCGTCGACATGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGAG
* *
18302676 GGGGTTGTGCGCATATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
255 GGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
18302741 TCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
319 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
18302806 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCG
384 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
18302871 AGTTTTTATCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGT
449 AGTTTTTAGCTGAATTTTTTTG-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
18302936 GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAACAGTTTCGAAAATCGTGA
513 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * * *
18303001 CAAATAGAAAACGAGTCATCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
578 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *** * * *
18303066 TTTACAA-CCATAAAAATGGCATTAGCACACAAAAATATGAAGATTTGCCAAAACCCACCTACCA
643 TTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
18303130 CCCTATCGATTCACTGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCG-----TCC
708 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCC
* *
18303190 ACTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATT-CTCAGTCTAAG
773 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT-AGTCTAAG
18303240 CCTACGAAGT
Statistics
Matches: 3799, Mismatches: 411, Indels: 318
0.84 0.09 0.07
Matches are distributed among these distances:
866 114 0.03
867 63 0.02
868 211 0.06
869 10 0.00
870 8 0.00
871 8 0.00
872 47 0.01
873 22 0.01
874 25 0.01
875 1 0.00
876 1 0.00
877 179 0.05
878 260 0.07
879 70 0.02
880 126 0.03
881 61 0.02
882 76 0.02
883 61 0.02
884 58 0.02
885 132 0.03
886 98 0.03
887 112 0.03
888 94 0.02
889 316 0.08
890 224 0.06
891 358 0.09
892 129 0.03
893 5 0.00
894 20 0.01
895 26 0.01
896 83 0.02
897 57 0.02
898 124 0.03
899 121 0.03
900 137 0.04
901 89 0.02
902 66 0.02
903 8 0.00
904 168 0.04
905 31 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
CCCGGATTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAGCC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGC
ACCATCGTCGACATGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTACG
GCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATC
Found at i:18300731 original size:26 final size:26
Alignment explanation
Indices: 18300700--18300757 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
18300690 CATGGGTTGA
* *
18300700 CCTAAGCATGCAGAGTTCATTCCCAG
1 CCTAAGCATACAGAGTTAATTCCCAG
* *
18300726 TCTAAGCATACGGAGTTAATTCCCAG
1 CCTAAGCATACAGAGTTAATTCCCAG
18300752 CCTAAG
1 CCTAAG
18300758 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (26 bp):
CCTAAGCATACAGAGTTAATTCCCAG
Found at i:18301629 original size:26 final size:26
Alignment explanation
Indices: 18301592--18301644 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18301582 GTTGACTTAG
*
18301592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18301618 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18301644 G
1 G
18301645 ATCGACCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18302520 original size:26 final size:26
Alignment explanation
Indices: 18302490--18302542 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18302480 GTTGACTTAG
18302490 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18302516 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18302542 G
1 G
18302543 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18303252 original size:26 final size:26
Alignment explanation
Indices: 18303216--18303265 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18303206 GGCTTAGGCA
* *
18303216 TACGGAGTTCATTCTCAGTCTAAGCC
1 TACGAAGTTCATTCCCAGTCTAAGCC
18303242 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
18303266 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCC
Found at i:18306351 original size:26 final size:26
Alignment explanation
Indices: 18306301--18306353 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18306291 CCAGTCTGAT
*
18306301 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
18306327 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
18306353 C
1 C
18306354 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:18307227 original size:26 final size:26
Alignment explanation
Indices: 18307198--18307250 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18307188 CCGGTCCGAT
18307198 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18307224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18307250 C
1 C
18307251 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18307421 original size:26 final size:27
Alignment explanation
Indices: 18307384--18307437 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
18307374 CTGATCCAAT
*
18307384 CTTAGGACTGGGAATGAACTCCGTATG
1 CTTAGGACTGGGAATGAACGCCGTATG
18307411 CTTA-GACTGGGAATGAACGCCGTATG
1 CTTAGGACTGGGAATGAACGCCGTATG
18307437 C
1 C
18307438 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (27 bp):
CTTAGGACTGGGAATGAACGCCGTATG
Found at i:18311975 original size:893 final size:882
Alignment explanation
Indices: 18309433--18312166 Score: 3352
Period size: 892 Copynumber: 3.1 Consensus size: 882
18309423 TCGGTCCGAT
* * * *
18309433 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
18309498 CGGCCAGCAGGGGTAGTATGCGTAAGCGAGGATC-GACCGGTCCCCTTCTGCATGCTGTCGATCC
66 CGGCCAG-AGGGGTGGGATGCGCAAGCG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** ** *
18309562 TGCTGTCTTAACCTCGGT-TCAAT-TGATCTTAGACTGGGAATGAAC-CCATATG-CTAAGGCCA
129 TGCTGCCACAACCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA-GCCA
* * **
18309623 ACCGACAAAACGAGC--GC---TGGCGGGCACTACGCCGGGCCTGAGAGACGGGATAAGCAAGCC
192 ACCGACGAAACGAGCGGGCGGGTGGCGGGCACTACGCC-GGCCAGAGAGACGGGATGCGCAAGCC
* *
18309683 GTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTTTGACATGCCAATGCCATT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT---ATGCCAATGCCATT
*
18309748 TTTATGGCTTGTAAATTCAT-GCAATGGACCCTTAAGCCTTCACGTGAAGTTTTCATGGCAAGAC
318 TTTATGGC-TGTAAATTCATAG-AATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGAC
* *
18309812 GACTCGTTTTCTATTCTTCATGATTTTTTGAAACTTTTTACGGTTCGAGGATTTTTT-AAATGTT
380 GACTCGTTTTCTATTTTTCATGATTTTTCGAAACTTTTTACGGTTC-AGGATTTTTTAAAAT-TT
* * * *
18309876 TTT-GGAAGGAGTTTTTGGTCCCAAACTTTGTAGATGTGATCCTTGTATTTTTGTTGGTATGCAC
443 TTTCGAAAGGAG-TTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC
* *
18309940 AAAAAAATCAAGCTAAAAACTCT-AGGTGTACAAGATTTTGTGGACCATTTGAAAAAAGTGTCCT
506 AAAAAATTC-AGCTAAAAACTCTGA-GTGTACAAGATTTTGT-GACCATTTGAAAAAAGTGTCCC
* * *
18310004 CATTTCAGACACTTTAATGGCT-ACTGGCAGGAAAACCTGTAAAATCTCAATTGCTCTTTAAGGG
568 CATTTCAGACACTTTAATGGCTAAAT-GCAGCAAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
18310068 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCAAGTACCTGCA-CCAT
632 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCAAGTACCAGCACCCAT
* * ** * *
18310132 TGCACATCATGTGCGTACA--CCCCCGG-CCCCCCGATCACCGGAACCCCAATGCTGCCGGTCAG
697 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATTGCCGGAACCCCAATGCCGCCGATCAG
* * *
18310194 GTT-TCTCGA-CGATGGTGCCCCGACGAAGAAAAATGTGACAACAGCACATGCCCGAGCCCAGTA
762 GTTCTCTCGAGCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCAAGCCCAGCA
* * * * *
18310257 TGTG-TGGCCGCAACCCTCGGTCCGATGCCAATCTTAGACTAGGAGTGAAC-TCTGTATG
827 TGTGCT-GTCGCAACCCTCGGTCTGGT-CCGATCTTAGACT-GGAATGAACTTC-GTATG
* *
18310315 CTTGGACT-GGCAATCAACTCCGTATTGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGCGCTCA
1 CTTAGACTAGG-AATGAACTCCGTA-TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
18310378 GCCGGCCAGAGGGGCGAGA-GCACAAGCCAGGG-TCGGTTGGCGTCCCCCTCTACGTGCTGCCGA
64 GCCGGCCAGAGGGGTGGGATGCGCAAG-C-GGGATCGGTCGG-GTCCCCCTCTGCGTGCTGTCGA
* * ** *
18310441 TCCTACTTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAA
126 TCCTGC-TGCCACAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
18310506 CCAACCGACGAAACGAGCGGACGGATGTGGGCGGGCACTACGCCGGTCAAAGA-ACGGGATGCGC
189 CCAACCGACGAAACGAGCGGGCGG--GT-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
18310570 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTAC-ATGCCAATGCC
251 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-CTATGCCAATGCC
* * *
18310634 ATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAGGA
315 ATTTTTATGG-CTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
18310699 CGACTCGTTTTCTATTTTTCATGA-TTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTT
379 CGACTCGTTTTCTATTTTTCATGATTTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTT
* ** *
18310763 TTCGAAAGGATTTTTGGTCATAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGCATGCACAA
444 TTCGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTTTGGCATGCACAA
* * *
18310828 AAAGATTCAGCTAAAAACTC-GAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTTTCCCCATT
508 AAA-ATTCAGCTAAAAACTCTGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* ** * * *
18310892 TTAGACACTTTAATGGCTACTTGCAGC-AAACCTGTAAAATCTCAAATGCTCTTGAAGGGGCTTT
572 TCAGACACTTTAATGGCTAAATGCAGCAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* ** * *
18310956 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCTAATATAAAGAACTAGTACCAACACCCATCGCA
637 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGCCAAGTACCAGCACCCATCGCA
*
18311021 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATTGCCGGAACCCCAATGCCACCGATCAGGTTC
701 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATTGCCGGAACCCCAATGCCGCCGATCAGGTTC
**
18311086 TCCTGCGATGCTCCAGAGATGGTGCCCCGGTGAAGAAAAATGTGACACCAGCACATGCCCAAGCC
766 T-CT-CGA-G---C---GATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCAAGCC
* *
18311151 CAGCATGTGCTATCACAACCCTCGGGTCTGGTCCGATCTTAGACTGTGAATGAACTTCGTATG
822 CAGCATGTGCTGTCGCAACCCTC-GGTCTGGTCCGATCTTAGACTG-GAATGAACTTCGTATG
* * * *
18311214 C-T-GACTAGG-ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTTAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18311276 CGGTCAGAGCGGTGGGATGGGCAAGCTGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCT
66 CGGCCAGAGGGGTGGGATGCGCAAGC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* *
18311341 GCTGCCGCAACCTCGGTCTGGTCTGATCTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
130 GCTGCCACAACCTCGGTCTGGTCTGATC-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
18311406 TGACGAAACGAGCGGGCGGGTAGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAAG-CG
194 CGACGAAACGAGCGGGCGGGT-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC-AAGCCG
*
18311470 TGGATCTATTAGGGTGGTAGGTGGTGTTTAGGCACATC-TCATATTTCTATGTGGCCAAT-CCA-
257 TGGATCGA-TAGGGTGGTAGGTGG-GTTTAGGCACATCTTCATATTTCTA--T-GCCAATGCCAT
* * *
18311532 TTTTAT-GCTGTAAATTCATAGAATGGTCCTTTAA-CATT-ACGTGAAGTTTCATGGCAAGAAGA
317 TTTTATGGCTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
18311594 CTTGTTGTCT-TTTTTCATGATTTTTGGAAAC-TTTTGCGGTTCAGGATTTTTTAAAATTTTTTC
382 CTCGTTTTCTATTTTTCATGATTTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
* *
18311657 GAAAGGAGTTTCGGCCCCAAACTTGGT-GAACGTAGATCCTTGTATTTTTTTGGGCATGCACAAA
447 GAAAGGAGTTTTGGTCCCAAACTTGGTAG-ACGT-GATCCTTGTATTTTTTT-GGCATGCACAAA
*
18311721 AAATTCAGCTAAAAACTCTGAGTGTACAAGATTTATGTGACCATTTGAGAAAAGTGTCCCCATTT
509 AAATTCAGCTAAAAACTCTGAGTGTACAAGATTT-TGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18311786 CAGATACTTTAATGGCTAAATGCAGCAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
573 CAGACACTTTAATGGCTAAATGCAGCAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18311851 AGTTCTTGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGCCAAGTACCAGTACCCATCGCACA
638 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCAAGTACCAGCACCCATCGCACA
* * *
18311915 ACATGTGCGCACACCCCCCCGGCCCCCCCCGATTGTCGGAACCCCAATGCCGCAGATCAGGTTCT
703 TCATGTGCGCACACCCCCCCGG-CCCCCCCGATTGCCGGAACCCCAATGCCGCCGATCAGGTTCT
* *
18311980 C-CG-GCGATGGTGCCCCGACGAAGAAAAA-GTGTCACCAGCACATGCCCAAGCCCAGCATATGC
767 CTCGAGCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGC
* ** *
18312042 TGTCGTAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATG
832 TGTCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTTCGTATG
* * * *
18312094 CTTAGACTAGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGCGCGGGCGCTCAAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
18312159 CGGCCAGA
66 CGGCCAGA
18312167 AGGGCCGGAT
Statistics
Matches: 1598, Mismatches: 180, Indels: 147
0.83 0.09 0.08
Matches are distributed among these distances:
880 42 0.03
881 57 0.04
882 103 0.06
883 138 0.09
884 65 0.04
885 57 0.04
886 100 0.06
887 46 0.03
888 71 0.04
889 58 0.04
890 6 0.00
891 89 0.06
892 181 0.11
893 138 0.09
894 128 0.08
895 98 0.06
896 96 0.06
897 20 0.01
898 10 0.01
899 86 0.05
900 9 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (882 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGTGGGATGCGCAAGCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
CTGCCACAACCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGCCAATGCCATTTTTATGGC
TGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCATGATTTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGT
TTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAATTCAGCTAA
AAACTCTGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTAAATGCAGCAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGGCCCCCCCGATTGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTCGAGCGATGGTG
CCCCGACGAAGAAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCG
GTCTGGTCCGATCTTAGACTGGAATGAACTTCGTATG
Found at i:18312106 original size:26 final size:26
Alignment explanation
Indices: 18312068--18312120 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18312058 CTGGTTTGAT
*
18312068 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18312094 CTTAGACTAGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18312120 C
1 C
18312121 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18312818 original size:26 final size:26
Alignment explanation
Indices: 18312775--18312827 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18312765 TTGATCTGAT
* *
18312775 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* *
18312801 CTTAGACTGGGAACGAACTCTGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
18312827 C
1 C
18312828 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:18314608 original size:26 final size:24
Alignment explanation
Indices: 18314570--18314620 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
18314560 CTGGTTCGAT
* *
18314570 CTTAGATGGAATGGACTCCGTATG
1 CTTAGATGGAATGAACTCCATATG
18314594 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGA-T-GGAATGAACTCCATATG
18314620 C
1 C
18314621 CGAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 6 0.26
25 1 0.04
26 16 0.70
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (24 bp):
CTTAGATGGAATGAACTCCATATG
Found at i:18315505 original size:26 final size:26
Alignment explanation
Indices: 18315467--18315519 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18315457 CCAGTCCGAT
* * *
18315467 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18315493 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18315519 C
1 C
18315520 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18320189 original size:26 final size:26
Alignment explanation
Indices: 18320160--18320211 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18320150 CCGGTTCGAT
18320160 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18320186 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18320212 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18322297 original size:905 final size:897
Alignment explanation
Indices: 18316651--18324420 Score: 9128
Period size: 877 Copynumber: 8.7 Consensus size: 897
18316641 CGTGGATCGA
* *
18316651 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC--AACGAGTGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
18316714 GCCATAGGGGCAGGATGCGTAA-CTTGGAGATCGATCGGAT--CCC-C--C-T-CTGCG----TG
66 GCCAGAGGGGCGGGATGCGCAAGC-CGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCGATCCTG
* * *
18316767 CTGCCACAACCCTCGGTCTGG-TCTGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCCAAT
129 CTGCCACAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * ** * *
18316831 CGACGAAACGTA-CGGGC--G-A-GCGGGCGGGCGCTACGCTGGATAGAGAGACGGGATGTGCAA
193 CGACGAAACG-AGCGGGCGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
* * * *
18316891 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTGCATATTTTTGCATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
18316956 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18317021 GACTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGAGATCTTTTAAAATTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTT
* * * ** *
18317085 TCGGAAGGAGTTTTAGTCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGCTGGCATGCCCAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
18317150 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
18317215 AAGACACTTTAATGGCTACTAGCAACAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
18317280 GTTCTTGATGTTTGATGTGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGTACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
18317345 TCATGTGCGCACACCCCCT-C-GCCCCCCCGATCGTCGGAACCCCAATGTCGCCGATCAGGTTCT
711 TCATGTGCGCACACCCCCTCCGGCCCCCCCGATCGTCTGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * * * *
18317408 CTGGCGATGCTCTG-CGATGGTGCCTC-AGTGAAAAAAAATGTGGCACCAACACATGCCCTAGCC
776 CCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGAGGCACCAGCACATG-CCGAGCC
* *
18317471 CAGAATGTGCTGTCGCAA-CC-C--TCG-G-TC----C--GG--T---CT--G-AT--T
839 CAGCATGTGCTGCCGCAACCCTCGGTCGTGATCTTGACTGGGAATGAACTCCGTATGCT
* * * *
18317508 ATAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTTAGCC
1 -TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
18317573 GGCTAGAGGGGCGGGATGTGCAAGCCTGGGATCGGTCTGCCGATCTTGCTACCGTAACCCTCGGT
65 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTC-G--G-----G-T-CC----CCCTC--T
* * * * * * ** * *
18317638 TCGGTCCCCCT-CTG-TGC-GCTACCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAA
113 GC-GT---GCTGC-GATCCTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAA
* * * * * * * * *
18317700 CTCC-TATGCCTAAGCCATCCGATGAAATGAGCGAGTGGAC-GCGCGAGCGGGTACTACGCCGGC
173 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAG-GCGGGTGGGCACTACGCCGGC
* **
18317763 CAGAGAGACGGGATGTACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
237 CAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
18317828 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCAC
302 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
*
18317893 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTT
367 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TT
* * * * **
18317958 C-AGATTTTTTAAAATTTTTTCAGAAGCATTTTTGGCCCCAAACTTTCTAGACGTGATCCTTGTA
431 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
18318022 TTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATT
496 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * * *
18318087 CGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTAGCAGCAAACCTGTAAATTCTCAAA
561 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * * *
18318152 TGCCCTTTCAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAA
626 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
18318217 GTACCAGCAGCCATCGCACATCATGTGCGCACACCCCC-CTCGGCCCCACCGATCGTCGGAACCC
691 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTC-CGGCCCCCCCGATCGTCTGAACCC
* * * * * *
18318281 CAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGGCAATGGTGCCCCGGCGAAG-AAAATTACG
755 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGA-G
18318345 GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA-CC-C--TCG-G-TC----C------
819 GCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGTGATCTTGACTGGGAA
18318394 -G-A-TCCG-AT-CT
883 TGAACTCCGTATGCT
* * *
18318404 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGCTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
18318469 GCCAGAGGGGCGGGATGCGCAAGTCGAGAATCGACCGGTTCCCCCTCTGCGTGATGCCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTG-CGATCCTG
** * *
18318534 CTGCTGCAACCCTCGCTCT-GATCTGATCTTAGACTGGGAAT-AACTCCGTATGCCTAAGCCAA-
129 CTGCCACAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
18318596 CGACGAAACGAGCAGGCGGGCGGGTGGGTGGGCACTACGTCGGCCAGAAAGACAGGAAGCGCAAG
193 CGACGAAACGAGCGGGCGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
* * * **
18318661 CCTTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
18318726 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
18318791 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTTC
388 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
18318856 GGAAGGAGTTTTGGCCCCAAAATTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAACA
453 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA-A
* *
18318921 AAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
18318986 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18319050 TTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18319115 CATGTGTGCACA-CCCC-CCGGCCCCCCCGATCG-CTAGAACCCCAATGTCGCCTGTCAGGTTCT
712 CATGTGCGCACACCCCCTCCGGCCCCCCCGATCGTCT-GAACCCCAATGCCGCCGGTCAGGTTCT
*
18319177 ----C--TG----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCA
776 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCGAGCCCA
* * * *
18319231 GCATGTGCTGTCGTAACCCTTGGTCTGATCCGATCTCTGACTGGGAATGAACTCCATATGCT
841 GCATGTGCTGCCGCAACCCTCGGTC-G-T--GATCT-TGACTGGGAATGAACTCCGTATGCT
* * * *
18319293 TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
18319358 G-CAGACGGGCGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTTTGCGTGCTGTCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTG-CGATCCTG
* * * * * * * *
18319422 CTACCATAAACCTCGGTCTGGTTCGATTTTAGATTGGGAATGAACTCCGTATACCTAAGCCGATC
129 CTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * * * *
18319487 GATGAAAC-A-------AACAGGC-GGTCGGGCACTACGCCGGCCATAGAGGCAAGATGCACAAG
194 GACGAAACGAGCGGGCGGGCAGGCGGGT-GGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
* * **
18319543 CCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACAGCTTCATATTTCCACGTGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
18319608 CTTTTATGGCTTGTAAATTCATA-ACATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 -TTTTATGGCTTGTAAATTCATACA-ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* **
18319672 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
18319737 TTGGAAAGAGTTTTGCCCCCAAACTTCGTAGACGTGATTCTTTGTATTTTTTTTGGCATGCACAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA-TCCTTGTATTTTTTTTGGCATGCACAA
* *
18319802 AAAAATTTAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18319867 TCAGACAATTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * * * *
18319932 AGTTCTCAAGGTTTAATAAAGGATAGGGGGCAAATATAACGGCCAAGTACCAGTACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ***
18319997 ATCATGT-CGCACACCCCCT-CGGCCCCCCCGATC-ACCGAAACCTCAATGCTATCGGTCAGGTT
710 ATCATGTGCGCACACCCCCTCCGGCCCCCCCGATCGTCTG-AACCCCAATGCCGCCGGTCAGGTT
* * * *
18320059 CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAAAAAAATGCA-GC-TCAGCACATGCCCAAG
774 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-AGGCACCAGCACATG-CCGAG
* *
18320122 CCCAACATGTGCTGCCGCAACCCTTGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
837 CCCAGCATGTGCTGCCGCAACCCTCGGT-C-G-T-GATCTT-GACTGGGAATGAACTCCGTATGC
18320187 T
897 T
* * *
18320188 TAGACTGGGAATGAACTCCTTATGACTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
18320253 GCCAGAAGGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTACCCCTCTGCCTGTTGCCGATCTTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTG-CGATCCTG
* * **
18320318 CTGCCGCAACCCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAGTC
129 CTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * ** *
18320383 GATGAAACGAACGGGCGGACAGGCAGGCGATTGGGCACTACACTGGCCAGAGAGATGGGATGCGT
194 GACGAAACGAGCGGGCGGGCAGGC-GG-G--TGGGCACTACGCCGGCCAGAGAGACAGGATGCGC
* * * * *
18320448 AAGTCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCGTCATATTTCTGCATGCCAATGT
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
18320513 CATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18320578 ACGACTCGTTTTCTATTTTTCACGATTTATGAAACTTATTGCGGTTCGAGATTTTTTAAAATTTT
385 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
18320643 TTCGAAAGGATTTTTGGGCCCAACCTTGGTAGACGTGATCCTTATATTTTTTTTTTGGCATGCAC
450 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTTTTGGCATGCAC
*
18320708 AAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
513 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
18320773 TTTCCAGGACCACTTTAATGGCCTACTGGCAG-AAACTTTGTAAAATCTCAAAATGCTCTTTAAG
578 TTT-CA-GA-CACTTTAATGG-CTACTGGCAGCAAAC-CTGTAAAATCTC-AAATGCTCTTTAA-
*
18320837 GGGGGCTGTGAGTTCTCGAGGTTTGATGAGAAAGGGATTAGGGGCCCAATTATAAGGGCCAGAG-
636 GGGGG-TGTGAGTTCTCGAGGTTTGAT--G--AGGGA-TAGGGGGCCAA-TATAAGGGCCA-AGT
*
18320901 ACTAGCACCCAATCGC-CATCATGTATGCGCACACCCCCT-CGGCCCCCCCGATCGTC-GAA-CC
693 ACCAGCACCC-ATCGCACATCATG--TGCGCACACCCCCTCCGGCCCCCCCGATCGTCTGAACCC
* * *
18320962 CAATGCTGTCGGTCAGGTTTCCTCCGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAAATT
755 CAATGCCGCCGGTCAGG-TT-CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG-AAAAA-T
* * * *
18321027 GAGGCACTTTAGCACATGCTCGAGGGCCCAGTATGTGC-ACCGCAAACC-C--TCG-G-TC----
816 GAGGCAC--CAGCACATGC-CGA--GCCCAGCATGTGCTGCCGCAACCCTCGGTCGTGATCTTGA
18321082 C-GGG--T---C-CCG-AT-CT
876 CTGGGAATGAACTCCGTATGCT
* * * * *
18321095 TAGACTGGGAATTAACTCCGTTATG-CAAAG-CAACCCATGAAACGAGCGTGCGGGGCACTCAGT
1 TAGACTGGGAATGAACTCCG-TATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCAGC
* * * * * *
18321158 CGGCCAGAGGGGCGGGATGTGTAAGACGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCT
64 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCT-GCGATCC
* * * *
18321223 TGCTGCTACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
127 TGCTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18321288 CCGACGAAACGAGGGGGCAGGCAGGCAGGCGGGCACTACGCCAGCCAGAGAGAC-GAGATGCGCA
192 CCGACGAAACGAGCGGGCGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACAG-GATGCGCA
* * * *
18321352 AGCCCTGGATCAATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCGTGGCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
18321417 ATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
18321482 TGACTCGTTTTCTATTTGTCACAATTTTTGAAACTTTTTGCGGTTAGGGAATTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * * * *
18321547 TCGAAAAGAGTTTTGGCCTCGAACATGGTAGACGTGAGCCTTGTATTTTTGTTGGCATGCATAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
18321612 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18321677 CAGACACTTTAATGGCTACAGCCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
18321742 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCCCCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
18321807 TCATGTGTGCACACCCCCTCCGGCCCCCCCGATCGCCTGAACCCCAATGCCGCCGGTCAGGTTCT
711 TCATGTGCGCACACCCCCTCCGGCCCCCCCGATCGTCTGAACCCCAATGCCGCCGGTCAGGTTCT
* ** *
18321872 CCGGCGATGCTTCGACGATGGTGCCCCGGTGAAGAAAAATGGGGCACCAGCACATGCCGGAGCCC
776 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCC-GAGCCC
* * * *
18321937 AACATGTACTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
840 AGCATGTGCTGCCGCAACCCTCGGT-C-G--TGATCTT-GACTGGGAATGAACTCCGTATGCT
* * * * * *
18322000 TGGACTAGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** ** *
18322065 GCCAGAGGGGCGGGATGCGTAAGCCAAGGATCAGTCGGGTCTTCCTCTGCGTACTGCAGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGC-GATCCTG
* * * * * * * *
18322130 CTACCATAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACT
129 CTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18322195 GACGAAATGAGCGGGCGGGCAGACGGGTGGGCACTATGCCGGCCAAAGAGACAGGATGCGCAAGC
194 GACGAAACGAGCGGGCGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGC
* *
18322260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* *
18322325 TTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
18322390 CTCGTTTTTTATTTTTCACGATTTTTGAAACTTATTATGGTTCGAGATTTTTTAAAATTTTTTCG
389 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
18322455 GAAGGAGTTTTGGCCCCAAACTT-GTAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * * *
18322519 AATTCAGCTAAAAACTCCAAGCGTACAAGATTTTGTGACCACTCGAAAAAAGTGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
18322584 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGATT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18322649 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
18322714 ATGTGCGCACA-CCCC-CCGGCCCCCCCGATCGTCTGAACCTCAATGTCGCCGGTCAGGTTCTCT
713 ATGTGCGCACACCCCCTCCGGCCCCCCCGATCGTCTGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
18322777 GGTGATGCTCCGATGATGGTGCCCCGACGAACAAAAATGAGGTACCAGCACATGCCCGAGCCCAG
778 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATG-CCGAGCCCAG
* *
18322842 CATGTGCTGTCGCAACCCT---T-G-G----T--CT--G---G---TCC-AAT-CT
842 CATGTGCTGCCGCAACCCTCGGTCGTGATCTTGACTGGGAATGAACTCCGTATGCT
*
18322877 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* *
18322942 GCCAGAGGGGCGGGATGCGCAACCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTG-CGATCCTG
* * * ** *
18323007 CTGTCACAACCCTTGATCTGGTTTAATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACC
129 CTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** ** * *
18323072 GACGATACGAGCTTGCGGGTGGGTGGGCGGGCACTACGCCGGCCAGAGAGAC-GTGATGCGCAAG
194 GACGAAACGAGCGGGCGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACAG-GATGCGCAAG
* *
18323136 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
18323201 TTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
18323266 ACACGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTCTTC
388 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
18323331 GGATGGAGTTTTGGCCTCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAA
453 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
*
18323396 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * *
18323461 GACACTTTAGTAGCTGCTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
18323526 TCTTGAGGTTTGATGAGGGATCGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
18323591 ATGTGCGCAC-CCCCCGCTCGACCCCCTCGATCGTCGGAACCCCATTACCGTCGGTCAGGTTCTC
713 ATGTGCGCACACCCCCTC-CGGCCCCCCCGATCGTCTGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * ** *
18323655 TGGCGATGCTTC-AGCAATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCC
777 CGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGC-CGAGCCC
* * * **
18323719 AGCATGTACTTCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCACATGCT
840 AGCATGTGCTGCCGCAACCCTCGGT-C-GT--GATCTT-GACTGGGAATGAACTCCGTATGCT
* * *
18323782 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * ** * *
18323847 GCTAGAGGGGCTAGATGCACAAGCCGACGATCGATCGGGTCCCCTTCTACGTGCTGTCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTG-CGATCCTG
** * * * * *
18323912 CTGCTGCAACCCTCGATCCGATTCGATCTTAGAATGGGAATGAACTCCGTATGCCAAAGCCAACC
129 CTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
18323977 GACGAAACGAGCGGGC--G--GGCGGGTGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGT
194 GACGAAACGAGCGGGCGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGC
* * *
18324038 CGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCACT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * *
18324103 TTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTCAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * * * *
18324168 CGCGTTTTTTCTTTTTCACAATGTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTAG
389 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* *
18324233 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTATAAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* *
18324298 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTCGTGACCAATTGAAAAAAGTGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18324363 ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
18324421 CCGATCTGAT
Statistics
Matches: 5963, Mismatches: 701, Indels: 453
0.84 0.10 0.06
Matches are distributed among these distances:
858 37 0.01
860 45 0.01
861 3 0.00
863 22 0.00
864 35 0.01
865 6 0.00
867 2 0.00
868 1 0.00
869 3 0.00
872 1 0.00
873 2 0.00
874 1 0.00
875 40 0.01
876 13 0.00
877 1029 0.17
878 168 0.03
879 111 0.02
881 19 0.00
882 102 0.02
883 283 0.05
884 139 0.02
885 13 0.00
886 22 0.00
887 66 0.01
888 136 0.02
889 152 0.03
890 18 0.00
891 3 0.00
892 466 0.08
893 5 0.00
894 94 0.02
895 295 0.05
896 129 0.02
897 27 0.00
898 15 0.00
899 3 0.00
900 4 0.00
901 471 0.08
902 3 0.00
903 358 0.06
904 23 0.00
905 804 0.13
906 48 0.01
907 316 0.05
908 172 0.03
909 6 0.00
910 3 0.00
911 14 0.00
912 20 0.00
913 13 0.00
914 5 0.00
915 22 0.00
916 1 0.00
919 4 0.00
920 9 0.00
921 27 0.00
922 25 0.00
923 5 0.00
924 60 0.01
925 8 0.00
926 5 0.00
927 1 0.00
928 1 0.00
929 10 0.00
930 8 0.00
931 11 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCGATCCTGCT
GCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCTCCGGCCCCCCCGATCGTCTGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCGTGATCTTGACTGGGAATGAACTCCGTATGCT
Found at i:18325050 original size:681 final size:677
Alignment explanation
Indices: 18323751--18325101 Score: 2035
Period size: 681 Copynumber: 2.0 Consensus size: 677
18323741 GGTCCAGTCC
18323751 GATCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * * ** * *
18323816 CCCATGAAACGAGCGTGTGGGTGCTCAGCCGGCTAGAGGGGCTAGATGCACAAGCCGACGATCGA
66 CCCACGAAACGAGCGTGCAGGCGCTCAACCAACCAGAGGGGCAAGATGCACAAGCCGACGATCGA
* * * *
18323881 TCGGGTCCCCTTCTACGTGCTGTCGATCCTGCTGCTGCAACCCTCGATCCGATTCGATCTTAGAA
131 CCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGATTCGATCTTAGAA
* * * *
18323946 TGGGAATGAACTCCGTATGCCAAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACG
196 TAGGAATGAACTCCGTAGGCCAAAGCCAACCGACGAAACGAGCGAGCAGGCGGGTGGGCACTACG
* * ** *
18324011 CCGGCTAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATC
261 CCGGCCAGAGAGACGGGATGCACAAACCGTGGATCGATAGGGTGGTAGGTTAGTTTAGGCACATC
* *
18324076 TTCATATTTCTGTGTGCCAATGCCACTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCC
326 TTCATATTTCTGTGTGCCAATGCCACTTTTATGGCCTGTAAATTCATACAACGGTACCTTAAGCC
* * *
18324141 TTTACGTCAAGTTTCATGGCAAGACGACGCGTTTTTTCTTTTTCACAATGTTTAAAACTTTTTAC
391 TTCACGTCAAGTTTCATGGCAAGACGACGCGTTTTCTATTTTTCACAATGTTTAAAACTTTTTAC
* *
18324206 GGTTCAGGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
456 GGTTCAGCATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCT
* * * *
18324271 TGTATTTTTTTTGGCATGTATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTCGTGAC
521 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTCGTGAC
*
18324336 CAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCT
586 CAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
18324401 CAAATGCTCTTTAAAGGGGTCCGATCT
651 CAAATGCTCTTTAAAGGGGTCCGATCT
* *
18324428 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** *
18324493 GCCACGAAACGAGCGTGCAGGCGCTCAACCAACCAGAGGGGCAAGATGCGTAAGCC-AGGGATCG
66 CCCACGAAACGAGCGTGCAGGCGCTCAACCAACCAGAGGGGCAAGATGCACAAGCCGA-CGATCG
* ** *
18324557 GCCGGGTCCCCCTCTGTGTGCTG-CTGATCCTACTGCCGCAACCCTCGGTCCGA-TCTGATCTTA
130 ACCGGGTCCCCCTCTACGTGCTGTC-GATCCTACTGCCGCAACCCTCGATCCGATTC-GATCTTA
* * *
18324620 GACTAGGAATGAACTCCGTAGGCCTAAGCCAACTGACGAAACGAGCGAGCAGGCGGGCTGGCAGG
193 GAATAGGAATGAACTCCGTAGGCCAAAGCCAACCGACGAAACGAGCGAGCAGGCGGG-T-G--GG
*
18324685 CACTACGTCGGCCAGAGAGACGGGATGCACAAACCGTGGATCGATAGGGTGGTAGGTTAGTTTAG
254 CACTACGCCGGCCAGAGAGACGGGATGCACAAACCGTGGATCGATAGGGTGGTAGGTTAGTTTAG
* * *
18324750 GCACATCTTCATATTTCTGTGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAACGGTACC
319 GCACATCTTCATATTTCTGTGTGCCAATGCCACTTTTATGGCCTGTAAATTCATACAACGGTACC
* * * * * *
18324815 TTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAAC
384 TTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACGCGTTTTCTATTTTTCACAATGTTTAAAAC
*
18324880 TTTTTACGGTTC-GACATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATGGTAGAC
449 TTTTTACGGTTCAG-CATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACATGGTAGAC
*
18324944 GTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGAT
513 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGAT
* * *
18325009 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTG
578 TTCGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
18325074 TAAAATCTCAAATGCTCTTTAAGGGGGT
643 TAAAATCTCAAATGCTCTTTAAAGGGGT
18325102 GTGAGTTCTT
Statistics
Matches: 603, Mismatches: 63, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
676 4 0.01
677 212 0.35
678 1 0.00
679 1 0.00
680 1 0.00
681 384 0.64
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (677 bp):
GATCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCAGGCGCTCAACCAACCAGAGGGGCAAGATGCACAAGCCGACGATCGA
CCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGATTCGATCTTAGAA
TAGGAATGAACTCCGTAGGCCAAAGCCAACCGACGAAACGAGCGAGCAGGCGGGTGGGCACTACG
CCGGCCAGAGAGACGGGATGCACAAACCGTGGATCGATAGGGTGGTAGGTTAGTTTAGGCACATC
TTCATATTTCTGTGTGCCAATGCCACTTTTATGGCCTGTAAATTCATACAACGGTACCTTAAGCC
TTCACGTCAAGTTTCATGGCAAGACGACGCGTTTTCTATTTTTCACAATGTTTAAAACTTTTTAC
GGTTCAGCATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTCGTGAC
CAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAAGGGGTCCGATCT
Found at i:18325365 original size:26 final size:26
Alignment explanation
Indices: 18325336--18325388 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18325326 CTGGTCCGAT
18325336 CTTAGA-CTGGGAATGAACTCCGTATG
1 CTTAGATC-GGGAATGAACTCCGTATG
18325362 CTTAGATCGGGAATGAACTCCGTATG
1 CTTAGATCGGGAATGAACTCCGTATG
18325388 C
1 C
18325389 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCGTATG
Found at i:18326241 original size:26 final size:26
Alignment explanation
Indices: 18326212--18326263 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18326202 CTGGTCCGAT
18326212 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18326238 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18326264 ACAAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18326907 original size:897 final size:896
Alignment explanation
Indices: 18324428--18327883 Score: 4774
Period size: 897 Copynumber: 3.9 Consensus size: 896
18324418 GGTCCGATCT
* * *
18324428 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTATGACAAAGTCA
* * * * * **
18324492 AGCCACGAAACGAGCGTGCAGGCGCTCAACCAACCAGAGGGGCAAGATGCGTAAGCC-AGGGATC
65 ACCCACAAAATGAGCGTGCAGGCGCTCAGCCAGCCAGAGGGGCTGGATGCGTAAGCCGA-GGATC
* * * ** * * * * * * * **
18324556 GGCCGGGTCCCCCTCTGTGTGCTGCTGATCCTACTGCCGCAACCCTCGGTCCGATCTGATCTTAG
129 AGTCGTGTCCCCCTCTGCATGCTGCTGATCTTGCTACTGCAACCCTCTGTTCGGTCCAATCTTAG
* * * * *
18324621 ACTAGGAATGAACTCCGTAGGCCTAAGCCAACTGACGAAACGAGCGAGCAGGCGGGCTGGCAGGC
194 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-T-G--GGC
* * * * **
18324686 ACTACGTCGGCCAGAGAGACGGGATGCACAAACCGTGGATCGATAGGGTGGTAGGTTAGTTTAGG
255 ATTACCTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** * * *
18324751 CACATCTTCATATTTCTGTGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAACGGTACCT
320 CACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAAATCATACAATGGTCCCT
* * *
18324816 TAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACT
385 TAAGCCTTCACGTGAAGTTTCATGGCAAGA-GACTCGTTTTCTATTTTTCACGA-TTTTCAAACT
** ** *
18324881 TTTTACGGTTCGACATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATGGTAGACGT
448 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
18324946 GATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTT
513 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTT
* *
18325011 TGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTA
578 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTA
* * *
18325076 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGGTAGGGGGCCAATA
643 AAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGATGAGGGATAGGGGACCAATA
* * * *
18325141 TAAGGGCCAAGTAGCAGCACCCATTGCACATCATGTGCGCACACCCCCACCCGG-CCCCCCGATC
708 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC-CCTGGCCCCCCCAATC
* * * * * * * ** * *
18325205 GTCGAAAACCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCTATGATAGAGCCCC-GACGAA
770 GCCG-AAACCCAATACCGTCGGTCGGGTTCTCCGATGATTCTCCAACAATGGTGCCCCAG-CGAA
* * * *
18325269 GAAAAATGCGGCACCAGCACATG-CCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCC
833 GAAAAATACGGCACCAGCACATGCCCT-AGCCCAGCATGTGCTGCTGCAACCCTCAGTCTGGTCC
* * *
18325333 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TCGGGAATGAACTCCGTATGCCTAAGTCA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTTCGTATGACAAAGTCA
* * * *
18325397 ACCCACGAAATGAGCGTGCAGGCGCTCAGCC-GACCAGAGGGGCGGGATGCGCAAGCCGGGGATC
65 ACCCACAAAATGAGCGTGCAGGCGCTCAGCCAG-CCAGAGGGGCTGGATGCGTAAGCCGAGGATC
* * * * * ** *
18325461 AGTCAG-GTCCCCCTCTACGTGCTGCTGATAC-TGCTGCTGCAAACCTC-GGTCTGGTCTGAGCT
129 AGTC-GTGTCCCCCTCTGCATGCTGCTGAT-CTTGCTACTGCAACCCTCTGTTC-GGTCCAATCT
18325523 TAGACTGGGAATG-ACT-CGTATGCCTAAG-CAACCGACGAAA-GA-C-GGCGGG-GCGGT---C
191 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG-GGTGGGC
* * * * *
18325578 A-TA-CACGGCCAGAGAGACGGGATGCGC-AGCTGTGGGTCGATATGGAGG-A-GTGGGTTTAGG
255 ATTACCTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
18325638 -ACATCTTCATATTTCTGCATGGCC-A-TCCATTTTTATGGCTTGT-AAATGCATACAATGGTCC
320 CACATCTTCATATTTCTGCAT-GCCAATTCCATTTTTATGGCTTGTAAAAT-CATACAATGGTCC
* * * * **
18325699 CTT-AGCCTTCACG-G-ACTTTCA-GGCAAGACGA--CGTTTCTTATATTTTTAATGATTTT-TG
383 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-GACTCG-TT-TTCTATTTTTCACGATTTTCAA
* * * *
18325757 ACTATTTT-TGGTTTGGGATTTTTTAAAATTTTTTCAGATGGAGTTTTGGCCCCAAACTTGCTAG
445 ACT-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * *
18325821 GCGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCCAAAAACTGGAAGTGTACAAG
509 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAG
*
18325886 ATATTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACC
574 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACC
18325951 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGATGAGGGATAGGGGACC
639 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGATGAGGGATAGGGGACC
*
18326016 AATATGAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCAAT
704 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCAAT
18326081 CGCCGAAACCCAATACCGTCGGTCGGGTTCTCCGATGATTCTCCAACAATGGTGCCCCAGCGAAG
769 CGCCGAAACCCAATACCGTCGGTCGGGTTCTCCGATGATTCTCCAACAATGGTGCCCCAGCGAAG
18326146 AAAAATACGGCACCAGCACATGCCCTAGCCCAGCATGTGCTGCTGCAACCCTCAGTCTGGTCC
834 AAAAATACGGCACCAGCACATGCCCTAGCCCAGCATGTGCTGCTGCAACCCTCAGTCTGGTCC
18326209 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGACAAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGACAAAGTCAA
* * * * *
18326274 CCCATAAAATGAGTGTGCGGGCAG-TCAGCCAGCCGGATGGGCTGGATGCGTAAGCCGAGGATCA
66 CCCACAAAATGAGCGTGCAGGC-GCTCAGCCAGCCAGAGGGGCTGGATGCGTAAGCCGAGGATCA
*
18326338 GTCGTGTCCCCCTCTGCATGCTG-TCGATCTTGCTACTGTAACCCTCTGTTCGGTCCAATCTTAG
130 GTCGTGTCCCCCTCTGCATGCTGCT-GATCTTGCTACTGCAACCCTCTGTTCGGTCCAATCTTAG
* *
18326402 ATTGGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCATTA
194 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCATTA
** * *
18326467 TGTCTGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
259 CCTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
18326532 TCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAAATCATACAATGGTTCCTTAAG
324 TCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAG
*
18326597 CCTTCACGTGAAGTTTCATGGCAAGAGGGCTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTT
389 CCTTCACGTGAAGTTTCATGGCAAGA-GACTCGTTTTCTATTTTTCACGATTTT-CAAACTTTTT
* *
18326662 ATGGTTCGGGA-TTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
452 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
18326726 CTTGTATTTTTGTTGGCATGCATAAAAAAAGTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTG
517 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTG
*
18326791 ACCATTTGAAAAAAGTGTCCCCATTTCACACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
582 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
*
18326856 CTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGATGAGGGATAGGGGACCAATATGAG
647 CTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGATGAGGGATAGGGGACCAATATAAG
18326921 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCAATCGCCGAAA
712 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCAATCGCCGAAA
18326986 CCCAATACCGTCGGTCGGGTTCTCCGATGATTCTCCAACAATGGTGCCCCAGCGAAGAAAAATAC
777 CCCAATACCGTCGGTCGGGTTCTCCGATGATTCTCCAACAATGGTGCCCCAGCGAAGAAAAATAC
18327051 GGCACCAGCACATGCCCTAGCCCAGCATGTGCTGCTGCAACCCTCAGTCTGGTCC
842 GGCACCAGCACATGCCCTAGCCCAGCATGTGCTGCTGCAACCCTCAGTCTGGTCC
18327106 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGACAAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGACAAAGTCAA
* * * * *
18327171 CCCATAAAATGAGTGTGCGGGCAG-TCAGCCAGCCGGATGGGCTGGATGCGTAAGCCGAGGATCA
66 CCCACAAAATGAGCGTGCAGGC-GCTCAGCCAGCCAGAGGGGCTGGATGCGTAAGCCGAGGATCA
*
18327235 GTCGTGTCCCCCTCTGCATGCTG-TCGATCTTGCTACTGTAACCCTCTGTTCGGTCCAATCTTAG
130 GTCGTGTCCCCCTCTGCATGCTGCT-GATCTTGCTACTGCAACCCTCTGTTCGGTCCAATCTTAG
*
18327299 ATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCATTA
194 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCATTA
* * * * *
18327364 CCTCGGCCAGTGAGACGGGATGCGCAGGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGTCATA
259 CCTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
18327429 TCTTCATATTTCTG-AGTTCCAATGCCA-TTTTATGGCTTGTGAATTCATACAATGGTCCCTTAA
324 TCTTCATATTTCTGCA-TGCCAATTCCATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAA
* * * * *
18327492 GCCTTCACGTGAAGATTCGTGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTCAAAATTTTT
388 GCCTTCACGTGAAGTTTCATGGCAAGA-GACTCGTTTTCTATTTTTCACGATTTTCAAACTTTTT
* * *
18327557 GCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATC
452 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
18327622 CTTGT-TTTCTTGTTGGCA--CACAAAAAATTTCAGCTAAAAAATCGAAGCGTACAAGATTTTGT
517 CTTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGT
18327684 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAA
581 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAA
* * *
18327749 TCTCAAATGCTTTTTAAGGGGGTTTGTGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
646 TCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGATGAGGGATAGGGGACCAATATAA
* * * **
18327814 GGGCCAAGTACCAGCACCCATCGTACATCATGGGCGCACACCCCCTCGGCCCCCCCGATCATCGA
711 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT-GGCCCCCCCAATCGCCGA
18327879 AACCC
775 AACCC
18327884 CAATGTCGCC
Statistics
Matches: 2311, Mismatches: 185, Indels: 120
0.88 0.07 0.05
Matches are distributed among these distances:
875 3 0.00
876 272 0.12
877 28 0.01
878 11 0.00
879 291 0.13
880 12 0.01
881 22 0.01
882 14 0.01
883 2 0.00
884 13 0.01
885 34 0.01
886 21 0.01
887 32 0.01
888 18 0.01
889 17 0.01
890 35 0.02
891 23 0.01
892 35 0.02
893 14 0.01
894 209 0.09
895 47 0.02
896 171 0.07
897 763 0.33
898 16 0.01
899 6 0.00
900 1 0.00
901 2 0.00
902 11 0.00
903 11 0.00
904 6 0.00
905 168 0.07
906 3 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (896 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGACAAAGTCAA
CCCACAAAATGAGCGTGCAGGCGCTCAGCCAGCCAGAGGGGCTGGATGCGTAAGCCGAGGATCAG
TCGTGTCCCCCTCTGCATGCTGCTGATCTTGCTACTGCAACCCTCTGTTCGGTCCAATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCATTACC
TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGAGACTCGTTTTCTATTTTTCACGATTTTCAAACTTTTTACGG
TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCAATCGCCGAAACCCA
ATACCGTCGGTCGGGTTCTCCGATGATTCTCCAACAATGGTGCCCCAGCGAAGAAAAATACGGCA
CCAGCACATGCCCTAGCCCAGCATGTGCTGCTGCAACCCTCAGTCTGGTCC
Found at i:18327138 original size:26 final size:26
Alignment explanation
Indices: 18327109--18327160 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18327099 CTGGTCCGAT
18327109 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18327135 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18327161 ACAAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18329517 original size:26 final size:26
Alignment explanation
Indices: 18329481--18329533 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18329471 CTGGTCTGAT
18329481 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18329507 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18329533 C
1 C
18329534 CTAAGTCGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18331156 original size:737 final size:737
Alignment explanation
Indices: 18329743--18331206 Score: 2268
Period size: 737 Copynumber: 2.0 Consensus size: 737
18329733 GGAACTGTGT
* * *
18329743 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCAGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCT
*
18329808 TCATATTTCTACATGCCAATTCCATTTTTATGGCTTATAAATTCATACAATGGTCACGTAAGCCT
66 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCACGTAAGCCT
* * * **
18329873 TCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATCTTTGAAACTTTTTGTG
131 TCACGTGAAGTTTCATCGCAAGATGACTCGTTTTCTATTTGTCACGATCTTTGAAACTGTTTACG
* *
18329938 GTTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCACAAAGTTGGTAGACGTGATCCTT
196 GTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCACAAACTTGGTAGACGTGATCCTT
* *
18330003 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTCTGTGACC
261 GTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCAAAGTGTACAAGATTCTGTGACC
* * * *
18330068 ATTTGAAAAAAGTGTCCCCATTTCAGAAATTTTAATGGCCCCTGGTAGCAAACCTGTAAAATCTC
326 ATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCCACTGGCAGCAAACCTATAAAATCTC
** *
18330133 AAATGCTCATTAAGGGGGTGTGAGTTCTTGAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGC
391 AAATGCTCATTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
18330198 CAAGTACCAACACCCATCGCACATCCTGTGCGCACACCCCCCCGGCCCCCCCGATCGTTGAAACC
456 CAAGTACCAACACCCATCGCACATCATATGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACC
* * **
18330263 CCAACGCCACCGGTCAGGTTCTCCGGCAATACTCCAGTGATGGTGCCCCGGTGAAGAAAAATGCG
521 CCAACGCCACCGGTCAGGTTCTACGGCAATACTCCAGCGATGGTGCCCCGACGAAGAAAAATGCG
*
18330328 GCACCAGCACATGCCCAAGCCCAACATATGCTGTCACAACCCTCGATCCGGTCTGATCTTAGACT
586 GCACCAGCACATGCCCAAGCCCAACATATGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACT
* * *
18330393 GGGAAAGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTTTGCCTAAGCCAATCGACGAAACG
651 GGGAAAGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
*
18330458 AGTGGGCGGGCGGGCACTACGC
716 AGCGGGCGGGCGGGCACTACGC
18330480 CGGCCAGAGAGACGGGATGCGCAAGCAGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCAGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCT
*** * * *
18330545 TCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCACGTAAGCCT
18330610 TCACGTGAAGTTTCATCGCAAGATGACTCGTTTTCTATTTGTCACGAT-TTTCGAAACTGTTTAC
131 TCACGTGAAGTTTCATCGCAAGATGACTCGTTTTCTATTTGTCACGATCTTT-GAAACTGTTTAC
*
18330674 GGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCACAAACTTGGTAGACGTGATGCT
195 GGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCACAAACTTGGTAGACGTGATCCT
* * *
18330739 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCGAAGTGTATAAGATTTTGTGAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCAAAGTGTACAAGATTCTGTGAC
* *
18330804 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
325 CATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCCACTGGCAGCAAACCTATAAAATCT
*
18330869 CAAATGCTCTTTAA-GGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
390 CAAATGCTCATTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
18330933 CCAAGTACCAGCACCCATTGCACATCATATGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAA
455 CCAAGTACCAACACCCATCGCACATCATATGCGCACACCCCCC-CGGCCCCCCCGATCGTCGAAA
* ** ** *
18330998 CCCCAATGCCGTCGGTCAGGTTCTACGGTGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAAT
519 CCCCAACGCCACCGGTCAGGTTCTACGGCAATACTCCAG-CGATGGTGCCCCGACGAAGAAAAAT
* * * * * * * * *
18331062 GCGGCACCAGCATATGCTCGAGCCTAGCATGTGCTGCCATAACCCTCGGTCTGGTCTGATCTTAG
583 GCGGCACCAGCACATGCCCAAGCCCAACATATGCTGCCACAACCCTCGATCCGGTCTGATCTTAG
* * * *
18331127 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
648 ACTGGGAAAGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
*
18331192 ACGAGCGTGCGGGCG
713 ACGAGCGGGCGGGCG
18331207 CTCAGCCGAC
Statistics
Matches: 656, Mismatches: 68, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
736 90 0.14
737 566 0.86
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (737 bp):
CGGCCAGAGAGACGGGATGCGCAAGCAGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCT
TCATATTTCTACATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCACGTAAGCCT
TCACGTGAAGTTTCATCGCAAGATGACTCGTTTTCTATTTGTCACGATCTTTGAAACTGTTTACG
GTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCACAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCAAAGTGTACAAGATTCTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCCACTGGCAGCAAACCTATAAAATCTC
AAATGCTCATTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAACACCCATCGCACATCATATGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACC
CCAACGCCACCGGTCAGGTTCTACGGCAATACTCCAGCGATGGTGCCCCGACGAAGAAAAATGCG
GCACCAGCACATGCCCAAGCCCAACATATGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACT
GGGAAAGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
AGCGGGCGGGCGGGCACTACGC
Found at i:18331158 original size:26 final size:26
Alignment explanation
Indices: 18331122--18331174 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18331112 CTGGTCTGAT
18331122 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18331148 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18331174 C
1 C
18331175 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18332074 original size:26 final size:26
Alignment explanation
Indices: 18332023--18332075 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18332013 CTGGTCTGAT
* *
18332023 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18332049 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18332075 C
1 C
18332076 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18332369 original size:901 final size:902
Alignment explanation
Indices: 18330411--18335701 Score: 7088
Period size: 901 Copynumber: 5.9 Consensus size: 902
18330401 ACTCCGTATG
* * *
18330411 CTTAGACT-GAGAATGAACTCCGTTTGCCTAAGCCAATCGACGAAAC--G-A----G-TGGGCGG
1 CTTAGACTAG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGG
* *
18330467 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCAGTGAATCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ***
18330532 TTTAGGCAAATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
18330597 GTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGATGACTCGTTTTCTATTTGTCACGATTTTC
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
18330662 GAAACTGTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCACAAACTTGGT
260 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
18330727 AGACGTGATGCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCGAAGTGTATA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
18330792 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18330857 CCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
18330921 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATATGCGCACACCCCCCTCGGCCCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTC-GCCCCCC
** * * * * *
18330986 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTACGGTGATGCTCCGACGATGGTGCCCCGA
583 CGATCACCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGG
* * * **
18331051 CGAAGAAAAATGCGGCACCAGCATATGCTCGAGCCTAGCATGTGCTGCCATAACCCTCGGTCTGG
648 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
*
18331116 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
713 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGT
* * * * * *
18331181 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCATAGGGGCAGGATGCGCAACCCGAGGAT
778 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * *
18331246 CGAACGGGTCCCCCTCTGCATGCTGTCGATCTTGCTGCCATAACCCTCAATCCAGTCGGAT
843 CGGACGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCC-TAACCCTCAGTCCGGTCCGAT
** * * * * *
18331307 CTTACCCTAGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGCCGGGCGGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGG
* ** * * *
18331372 CGGGCATTGTGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGGGGAAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
**
18331437 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTACAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
18331502 TCCCTTAAGCCTTCATGTTCAA-TTTCTTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
196 TCCCTTAAGCCTTCACG-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
18331566 AAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
260 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
18331631 AGACGTGATCCTTGTGTTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
18331696 AGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTC-GAAACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18331760 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
18331825 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CACCCCCTCG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGCCCCCCCG
* * ** *
18331889 ATCACCGGAACACCAATACCGCCGGTCA-GTATCTTCAACGATGCTTCGACGATGGTGCCCCGGC
585 ATCACCGGAACCCCAATACCGCCGGTCAGGT-TCTCCGGCGATGCTCCGACGATGGTGCCCCGGC
* * * *
18331953 AAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCATTGGTCTGGT
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* * *
18332018 CTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
714 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTC
* * * * *
18332083 AACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGTGGCGGGATGCACAAGCCGAGGATT
779 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
18332148 GGTCAGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCTCAACCTTCGGTCTGGTCTGAT
844 GGACGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCT-AACCCTCAGTCCGGTCCGAT
* * * *
18332208 CTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAATGAGCAGGCGGACGGGCGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGG
* *** * **
18332273 CGGGCATTACGCCGATGAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGCAGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
18332338 TTAGGCAAATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
18332403 TCCCTTAAGGCTTCACGCGAAGTTTCACGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
18332468 AAACTTTTTGA-GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
261 AAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
**
18332532 AGACGTGATCCTTGTATTTTTGTT-G---G--C-------TTCAGCTAAAAACTCGAAGACTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
18332584 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18332649 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
18332714 CCAATATAAGGGCCAAGTACCAGCGCCCATCGCACATCATGTGCGCACACCCCCT-GGCCCCCCG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGCCCCCCCG
** * * * *
18332778 ATCGTCGGAACCCCAATACCGCCGATCAGGTTCTCCTGCGATGCTTCGACGATGGTGCCCCGGTG
585 ATCACCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCG
* * * *
18332843 AAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGGTGCTGCAACCCTCGGTCTGGTC
650 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
* * * *
18332908 CGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGCATGCTTAAGTCA
715 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCA
* * *
18332973 ACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAAAGAGGCGGGATGCGCAAGCCGGGGATCG
780 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * ** * * *
18333038 GCCGGGTCCCCCTTTACGTGCTACCAATCCTGCTGCCATAACCCTCTTTTCGATCTGAT
845 GACGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCC-TAACCCTCAGTCCGGTCCGAT
* *** * *
18333097 CTTAGACTGGGAATGAACAATGTATGCCTAACCCAACAGACGAAACGAGCAGGC--A--------
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGG
* *
18333152 --GGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
18333215 TTAGGCTCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATGCAATGG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * ** *
18333280 TCCCTTAAGGCTTCACATGAAGTTTCATGGCCTGACGACTCGTTTTCTATTTTTCACAATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** **
18333345 AAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTTAGAAGGAGTTTTGG-TTCAAACTTGGTA
261 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
18333409 GATGGGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
18333474 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
18333539 CTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
18333603 CAATATAAGGGCCAAGTACCAGCACCCA-CGCACATCATGTGCGCACACCCCCTGGCCCCCCCGA
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGCCCCCCCGA
* * ** * * *
18333667 TCGCCGAAACCCCAATGTCGTCGGTCAGG-T-T------AT--T-CGACGATGGTGCCCCAGTGA
586 TCACCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGA
* * * *
18333721 AAAAAAATGCGGCACCAGCACATTCCCGAGCCCAGCATGTGTTGCCGCAACCCTC-GTTTCGGT-
651 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTC
* *
18333784 TCGATCTTAGACTGGGGAATGAACTCTGTATGCTTAGACTGGAAATGAACTCCGTATGCTTAAGT
715 T-GATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGT
* ** * * * * * * *
18333849 CGACCCACGAAATTAGCGTACGGGCGTTCAACCGGCCAGAAGGGTGGGATGCGTAATCCGGGGAT
778 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* *** * * * * *
18333914 C-GATCGGGTCCCCCTCTGCCTGCTGTTGATCCTGCTACTGTAACCCTCGGTCCAGTCCAAT
843 CGGA-CGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGC-CTAACCCTCAGTCCGGTCCGAT
* * **
18333975 CTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGC-GAGCGGGTGGGCGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-GCGGACGGGCGG
* *
18334039 GCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGA-ATGGGTGGTAGGTGG
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGGTGGTAGGTGG
* * * *
18334103 GTTTACGCACATCTTCATATTTCTACGTGCCAATGCCATCTTTATGGCTTGTAAATTCATATAAT
129 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
18334168 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTTTATTTTTCACGATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* *
18334233 TGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
259 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
*
18334298 TAGACGTGATCCTTGTATTTTTGTT-G---G--C-------TTCAGCTAAAAAGTCGAAGTGTAC
324 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
18334350 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGTAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
18334415 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
18334480 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC-CGGCCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTC-GCCCCCC
* * * * * *
18334544 CGATCACCGAAACCCCAATACCGCCAGTTAGGTTCTCCTGCGATGCTCCGACGATGGTGCCTCAG
583 CGATCACCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGG
* ** * ** * *
18334609 TGAAGAAAAATATGGCACCATCACATGCCCGAGCCCAGCATGTGCTGCCATAACCCTTGGTCCGG
648 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * *
18334674 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGCATGCTTAAGT
713 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGT
* * *
18334739 CAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGAT
778 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * *
18334804 C-GACTGGGT-CCCCTCTGCGTGCTGCCAATCTTGCTGTCGTAACCCTCAGTCCGATCCAAT
843 CGGAC-GGGTCCCCCTCTGCGTGCTGCCAATCCTGCTG-CCTAACCCTCAGTCCGGTCCGAT
* * * ** * * **
18334864 CTTAGACTGGGAATGAACTCCGTATACCTAAGACAACCGACGAAACGAGTGGGTGGGCAAGCGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGG
* * *
18334929 CGGGCACTATGCCGGCCAGAGAGACGGAATGCGCACGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18334994 TTAGGCACATCTTCATATTTCTACATGCCAATGCCA-TTTTATGGCTTGTAAATTCATAGAATGG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
18335058 TCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
18335123 AAAATTTTTACGGTT-GAAGATTTTTTATAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGT
261 AAACTTTTTACGGTTCG-AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
18335187 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAACTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
18335252 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGTAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18335317 CCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
18335382 CCAATATAAGGGCCAAGTACTAGCAGCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCTCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTC-GCCCCCCC
* * * * ** *
18335446 GATCACCGGAAGCCCAATGCCGCCGGTCAGGATCTCCGGCAATGCTCCGGTGATGGTGCCCCGAC
584 GATCACCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGC
* **
18335511 GAAGAAAAATGTC-GCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
649 GAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* *
18335575 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAACTCCATATGCTTAAGT
713 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGT
* * * * *
18335640 CAACCCATGAAACGAGCATGCAGGCGTTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
778 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
18335702 TGTCACGGAC
Statistics
Matches: 3869, Mismatches: 437, Indels: 173
0.86 0.10 0.04
Matches are distributed among these distances:
876 36 0.01
877 300 0.08
878 298 0.08
879 65 0.02
880 59 0.02
881 1 0.00
882 2 0.00
885 1 0.00
886 1 0.00
887 29 0.01
888 323 0.08
889 771 0.20
890 331 0.09
891 111 0.03
892 3 0.00
894 1 0.00
895 1 0.00
896 40 0.01
897 2 0.00
898 1 0.00
900 6 0.00
901 1014 0.26
902 1 0.00
903 57 0.01
904 412 0.11
905 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGCCCCCCCGA
TCACCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
ACGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCTAACCCTCAGTCCGGTCCGAT
Found at i:18332964 original size:26 final size:26
Alignment explanation
Indices: 18332912--18332967 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
18332902 CTGGTCCGAT
*
18332912 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGCATG
18332938 CTTAGACTGGGAATGAAC-TCTGCATG
1 CTTAGACTGGGAATGAACTTC-GCATG
18332964 CTTA
1 CTTA
18332968 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 2 0.07
26 26 0.93
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCATG
Found at i:18333840 original size:26 final size:27
Alignment explanation
Indices: 18333789--18333845 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 27
18333779 TCGGTTCGAT
* *
18333789 CTTAGACTGGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAATGAACTCCGTATG
18333816 CTTAGACT-GGAAATGAACTCCGTATG
1 CTTAGACTGGGAAATGAACTCCGTATG
18333842 CTTA
1 CTTA
18333846 AGTCGACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (27 bp):
CTTAGACTGGGAAATGAACTCCGTATG
Found at i:18334709 original size:26 final size:26
Alignment explanation
Indices: 18334680--18334735 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18334670 CCGGTCCGAT
*
18334680 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
18334706 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
18334732 CTTA
1 CTTA
18334736 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:18335621 original size:26 final size:26
Alignment explanation
Indices: 18335581--18335636 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18335571 CCAGTCTGAT
*
18335581 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18335607 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18335633 CTTA
1 CTTA
18335637 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18344750 original size:26 final size:26
Alignment explanation
Indices: 18344721--18344773 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18344711 CCGATCTGAT
*
18344721 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18344747 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18344773 C
1 C
18344774 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18345182 original size:887 final size:895
Alignment explanation
Indices: 18343511--18345555 Score: 2981
Period size: 889 Copynumber: 2.3 Consensus size: 895
18343501 TTTTATTTGG
*
18343511 CCATTTGAAAAAAGTGTCCCCATTTCAAAAACTTTAATGGCTACTGGAAGCAAACTTGTAAAATC
1 CCATTTGAAAAAAGTGTCCCCATTTCAAAAACTTTAATGGCTACTGGAAGCAAACCTGTAAAATC
*
18343576 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATTTTTGATGAGGGATAGGGGGCCAATATAATG
66 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAATTTTTGATGAGGGATAGGGGGCCAATATAATG
* *
18343641 GCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCCTCGGCCCCCCCGATCGCCGG
131 GCCAAGTACCAGTACCCATCACACATCATGT--GCACACCCCCCC-CGGGCCCCCCGATCGCCGG
* ** * * * *
18343706 AACCTCAATGTCGTTTGTCAGGATCTCCGACGATGCTTCGGTGATGGTGCCCCGACGAAGAAAAA
193 AACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAA
*
18343771 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCTGATCTTA
258 --TGG-ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTA
*
18343836 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCATGTACCTAAGTCAACCCACGA
320 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCATATACCTAAGTCAACCCACGA
* * **
18343901 AACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGTCGGGTC
385 AACGAGTGTGCGAGCGCTCAGTCAGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGACCGGGTC
*
18343966 CCCTTACGTGCTGTCGATCCTGCCGCCGCAACCCTTTGTCCGATCTGATCTTAGACTGGGAATGA
450 CCCTTACGTGCTGTCGATCCTGCCGCCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGA
*
18344031 ACTCCGCATGCGTAAGCCAACCGACGAAACAAGCAGGCAGGCGGGCGGGCACTACGTCGGCCAGA
515 ACTCCGCATGCCTAAGCCAACCGACGAAACAAGCAGGCAGGCGGGCGGGCACTACGTCGGCCAGA
* *
18344096 GAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
580 GAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
** * *
18344161 CTGAGTGATAATGTGACTTTTATGCCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGA
645 CTGAGTGATAATGCCACTTTTATGCCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* ** *
18344226 TGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATTTTTGAAACTGTTTGTGGTTCAGGA
710 AGTTTCATGGCAAGACAACTCAATTTCTATTTTTCACAATTTTTGAAACTGTTTGCGGTTCAGGA
* * * * *
18344291 -TTTTTTAGAAGT-TTTTAGGAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
775 TTTTTTTA-AAATATTTTAGAAAGGAGTTTGGGCCCCAAACTTGGTAGACGTGATCCGTGTATTT
* * *
18344354 TTTTTGGCATGGACAAAAAAATTCCGCTAAAAACTC-AGAGTGTACAAGATTTTCTGA
839 TTTTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCGA-AGTGTACAAGATTTTCTGA
*
18344411 CCATTTGAAAAAAGTGTCCCCATTTTAAAAACTTTAATGGCTACTGGAAGCAAACCTGTAAAATC
1 CCATTTGAAAAAAGTGTCCCCATTTCAAAAACTTTAATGGCTACTGGAAGCAAACCTGTAAAATC
18344476 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-ATTTTTGATGAGGGATAGGGGGCCAATATAATG
66 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAATTTTTGATGAGGGATAGGGGGCCAATATAATG
* *
18344540 GCCAA-TACCAGTACCCATCACACATCATGTGCACACCCCCCCCGGGCCCCCCGATTG-CAGAAC
131 GCCAAGTACCAGTACCCATCACACATCATGTGCACACCCCCCCCGGGCCCCCCGATCGCCGGAAC
* *
18344603 CCCAGTGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAAT-G
196 CCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGG
* * * *
18344667 -CCAGCACATGCCCGAGCTCAGCATGTGTTGCCGTAACCCTTGGTCC-GATCTGATCTTAGACTG
261 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCTGATCTTAGACTG
** * * *
18344730 GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
325 GGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCATATACCTAAGTCAACCCACGAAACGA
* *
18344795 GTGTGCGAGCGCTCAGTCAGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCTT
390 GTGTGCGAGCGCTCAGTCAGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCTT
*
18344860 -CTGTGTGCTGTCGATCCTGCCGCCGTAACCCTTGGTCCGATCT-ATTCTTAGACTGGGAATGAA
455 AC---GTGCTGTCGATCCTGCCGCCGCAACCCTTGGTCCGATCTGA-TCTTAGACTGGGAATGAA
* * * * *
18344923 CTCTGTATGCCTAAGCCAACCGACG-AA-ATG-A-GCGGGTGGGCGGGCACTACGTCGGCCAGAG
516 CTCCGCATGCCTAAGCCAACCGACGAAACAAGCAGGCAGGCGGGCGGGCACTACGTCGGCCAGAG
** *
18344984 AGACGGGATGCGCTTGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTC
581 AGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * *
18345049 TGCGTGCTAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
646 TGAGTGATAATGCCACTTTTATGCCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * ** * * **
18345114 GTTTCGTGGCAAGACGACTCAATTTCTATTTTTCATGATTTTTGACACTTTTTGCGGTTTGGGAT
711 GTTTCATGGCAAGACAACTCAATTTCTATTTTTCACAATTTTTGAAACTGTTTGCGGTTCAGGAT
*
18345179 TTTTTTAAAATATTTTCGAAAGGAGTTTGGGCCCCAAACTTGGTAGACGTGATCCGTGTATTTTT
776 TTTTTTAAAATATTTTAGAAAGGAGTTTGGGCCCCAAACTTGGTAGACGTGATCCGTGTATTTTT
*
18345244 TTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
841 TTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGA
* * *
18345299 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
1 CCATTTGAAAAAAGTGTCCCCATTTCAAAAACTTTAATGGCTACTGGAAGCAAACCTGTAAAATC
** * ** *
18345364 TCAAATGCTCTTTAAGGGAATGTGGGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
66 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAATTTTTGATGAGGGATAGGGGGCCAATATAATG
* * * *
18345429 GCCAAGTACCAGCACCCATCCCACATCTTGTGCGCACACCCCCCC-GG-CCCCCGATCGCCGGAA
131 GCCAAGTACCAGTACCCATCACACATCATGTGCACAC-CCCCCCCGGGCCCCCCGATCGCCGGAA
* * * * * * *
18345492 CCCCAATGCCGTCGTTCAGGTTCTCCGGTGAGGCTCTGGCGATGGTGCCCCGGTGAAGAAAAAT
195 CCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAAT
18345556 TCATCACCAG
Statistics
Matches: 1033, Mismatches: 100, Indels: 34
0.89 0.09 0.03
Matches are distributed among these distances:
887 200 0.19
888 196 0.19
889 221 0.21
890 91 0.09
891 85 0.08
892 1 0.00
894 58 0.06
895 13 0.01
896 12 0.01
898 24 0.02
899 38 0.04
900 94 0.09
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CCATTTGAAAAAAGTGTCCCCATTTCAAAAACTTTAATGGCTACTGGAAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAATTTTTGATGAGGGATAGGGGGCCAATATAATG
GCCAAGTACCAGTACCCATCACACATCATGTGCACACCCCCCCCGGGCCCCCCGATCGCCGGAAC
CCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGG
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGG
GAATGAACTCCATATGCTTAGACTGGGAATCAACTCCATATACCTAAGTCAACCCACGAAACGAG
TGTGCGAGCGCTCAGTCAGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCTTA
CGTGCTGTCGATCCTGCCGCCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCG
CATGCCTAAGCCAACCGACGAAACAAGCAGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGT
GATAATGCCACTTTTATGCCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
ATGGCAAGACAACTCAATTTCTATTTTTCACAATTTTTGAAACTGTTTGCGGTTCAGGATTTTTT
TAAAATATTTTAGAAAGGAGTTTGGGCCCCAAACTTGGTAGACGTGATCCGTGTATTTTTTTTGG
CATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGA
Found at i:18346482 original size:26 final size:26
Alignment explanation
Indices: 18346440--18346492 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18346430 TTGATCCGAT
*
18346440 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18346466 CTTAGACTAGGATTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18346492 C
1 C
18346493 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18348227 original size:26 final size:26
Alignment explanation
Indices: 18348198--18348250 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18348188 CCGATCTGAT
*
18348198 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18348224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18348250 C
1 C
18348251 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18348744 original size:900 final size:892
Alignment explanation
Indices: 18345580--18349126 Score: 3547
Period size: 892 Copynumber: 4.0 Consensus size: 892
18345570 TGCCCGAGAC
* * * * ** * ** * *
18345580 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGCGCTCAGTCAGCCAG
1 TGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGAGCATGCGGGCGCTCAACCGGCCAA
* * * * * ** *
18345645 AGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGT-CCCCTTCTGCGTGCTGTCGATCCTGTCGC
66 AGGGGCGGGATGCACAAGCCGGGGATCAACCGGGTACCCCTT-TCCGTGCTATCGATCCTACCAC
* * * * * * * *
18345709 AGCAACCCTTAGTGCGAT-CTATTCTTATACTGGGATTGAACTCTGTATGCCTAAGCCAACCGAC
130 CGCAACCCTCAGTCCGATCCGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAC
* * *
18345773 GAAACGAGCGGGTGGGCAGGCGGGCGGGTACT--ACGTCGGCCAGAGAGACGGGATGCGCAAGCC
194 GAAACGAGC------G-A-GCGGACGGGCACTGAAC--CGGCCAGAGAGACGGGACGCGCAAGCC
* * * ** *
18345836 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCTAATGCCATTT
249 GTGGATCAATAGGGTGGTAGGTGGGTTTAAGCACATCTTCAAATTTCTACGTGCCAATGCCATTT
*
18345901 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
314 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * * * * *
18345966 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTATGCGGTTCGGGATTTTTTAAAATTTTTTCGG
379 CCATTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATATTTTCAG
* * **
18346031 AAGGAT-TTTTGGC-CCCAAACTTGGTAGAC-AGGATCCTTGTATTTTTGTTGGCATGCATAAAA
444 AAGG-TGTTTT-ACTCCCAAACTTGGCAGACGA-GATCCGCGTATTTTTGTTGGCATGCA-AAAA
* *
18346093 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
505 AAATTCACCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
18346158 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAG
570 AGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAC
** ** * *
18346223 TTCTTGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
635 TTCTCAAGGTTTGACAAGGGATAGGGGGCCAATATAAGGGGCAAGTACCAGCACCCATCGCACAT
* * * * * * *
18346288 CATGTGCGCACACCCCCCCGACACCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCT--
700 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAACGCCTCCGGTCAGGTTCTCC
* ** * * *
18346351 --C--TG----G-CGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAA
765 GACGATGCTCCGAAGATGGTGCCCCGACGAAGAAAAA--TAG-ACCAGCACATGCCCGAGCCCAG
* ** * ** * *
18346407 CATGTGCTGTCGCAACCCTCGGT-TTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
827 CATGTACTACCACAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
*
18346471 AC
891 AA
* * * ** ** * * *
18346473 TAGGATTGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGTGTGCGGGTGCTCAGCCGACCAA
1 TGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGAGCATGCGGGCGCTCAACCGGCCAA
* * *** * * * * ** * *
18346538 AGGGGTC-GGATGCATAAGCCGAGGAT-TGGCTGGT-CCCACTTTGCATGCT-GCTGATTTTTCT
66 AGGGG-CGGGATGCACAAGCCGGGGATCAACCGGGTACCC-CTTTCCGTGCTATC-GATCCTACC
* * * * * * *
18346599 GCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
128 ACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAA
* * * ** * *
18346664 TGAAACGAGCGGGTGGACGGGTGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCG
193 CGAAACGAGCGAGCGGAC-GG-GCAC-TG-A--AC-C-GGCCAGAGAGACGGGACGCGCAAGCCG
* * * * * * *
18346729 TGGATCAATAGGGCGATAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
250 TGGATCAATAGGGTGGTAGGTGGGTTTAAGCACATCTTCAAATTTCTACGTGCCAATGCCATTTT
* *
18346794 TATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
315 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACC
* * * * **
18346859 CGTTTTCTATTTTTCATA-ATTTTCAAAACTTTTTGCGGTTC-GAGATTTTTTAAAATTTTTTTG
380 CATTTTCTATTTTTCA-AGATTTTTAAAACTTTTTACGGTTCAG-GATTTTTTAAAATATTTTCA
* * ** ** *
18346922 GAA-GTAGTTTTGGC-CCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGGACAAAA
443 GAAGGT-GTTTT-ACTCCCAAACTTGGCAGACGAGATCCGCGTATTTTTGTTGGCATGCA-AAAA
* *
18346985 AATTTCAGCTGAAAAA-TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
505 AAATTCACCT-AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18347049 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGA
569 CAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGA
* ** ** * *
18347114 GTTCTTGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
634 CTTCTCAAGGTTTGACAAGGGATAGGGGGCCAATATAAGGGGCAAGTACCAGCACCCATCGCACA
* * * ** * * *
18347179 TCATGTGCGCACA-CCCCCCGGCACCCCCGATCGCCAGAACTCGAGTGCCGCGGGTCAGGTTC-A
699 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAACGCCTCCGGTCAGGTTCTC
* *
18347242 C--CG--G-T-----GATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACTTGCCCGAGCTCA
764 CGACGATGCTCCGAAGATGGTGCCCCGACGAAGAAAAAT-A-G-ACCAGCACATGCCCGAGCCCA
* * *
18347297 GCATGTGCTGCCTCAA-CC-C--T-C-G---G-TC-----C-----A-G---TCCG-AT-CTTAG
826 GCATGTACTACCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
18347336 AA
891 AA
* *
18347338 TGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGAGCATGCGGGTGCTCAACCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGAGCATGCGGGCGCTCAACCGGCCAA
* * ** * * *
18347403 AGGGGCGGGATGCATAAGCCGGGGATCAATCGGGTACCCCTTTGTGTGCTATCGATCCTGCTACT
66 AGGGGCGGGATGCACAAGCCGGGGATCAACCGGGTACCCCTTTCCGTGCTATCGATCCTACCACC
* * * ** *
18347468 GTAACCCTCAGTTCGGTGTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAACGA
131 GCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGA
*
18347533 AACGAGCGAGCGGACGGGCACTGCACCGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCAATAG
196 AACGAGCGAGCGGACGGGCACTGAACCGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCAATAG
*
18347598 GGTGGTAGGTGGGTTTAAGCACATCTTCAAATTTCTATGTGCCAATGCCATTTTTATGGCTTGTA
261 GGTGGTAGGTGGGTTTAAGCACATCTTCAAATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
* ***
18347663 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTTGTTTTCTATT
326 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTTCTATT
* * * *
18347728 TTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGC
391 TTTCAAGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATATTTTCAGAAGGTGTTTTAC
* ** * * *
18347793 TCCCAAACTTGGCAGATGAGATCCTTGTATTTTTTTTTGCATGCAAAAAAAACTTCAGCTAAAAA
456 TCCCAAACTTGGCAGACGAGATCCGCGTATTTTTGTTGGCATGCAAAAAAAA-TTCACCTAAAAA
*
18347858 CTCAAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGC
520 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGC
* * * **
18347923 TACTGGTAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGATTTTTGAC
585 TACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGAC
** * * *
18347988 AAGGGATAGGGGGCCAATATAATTGGCATGTACCAGTACCCATCGTACATCATGTGCGCACACCC
650 AAGGGATAGGGGGCCAATATAAGGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* *
18348053 CCCCTCGGCCCCCCCGATCGCCAGAACCCCAATGTCGT-CGGTCAGGTTCTCCGACGATGCTCCG
714 CCCC-CGGCCCCCCCGATCGCCAGAACCCCAACG-CCTCCGGTCAGGTTCTCCGACGATGCTCCG
** * * * *
18348117 GTGATGGTGCCCCGACGAAGAAAAAT-G-CCGGCACATGCCCGAGCCTAGCATGTGCTACCATAA
777 AAGATGGTGCCCCGACGAAGAAAAATAGACCAGCACATGCCCGAGCCCAGCATGTACTACCACAA
* *
18348180 CCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
842 CCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAA
* ** ** * **
18348231 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGTTCAGTCGGCCAA
1 TGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGAGCATGCGGGCGCTCAACCGGCCAA
* * * * *
18348296 AGGGGTGGGATGCGCAAGCC-GGGATCGACCGGGT-CCCCTTCTCCGTGCTGTCGATCCTACCGC
66 AGGGGCGGGATGCACAAGCCGGGGATCAACCGGGTACCCCTT-TCCGTGCTATCGATCCTACCAC
** * *
18348359 CGCAACCCTTGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
130 CGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACG
* * *
18348424 AAACGAGCGGGCGAGCGGACGGGCGGCCACT-AAGTCGGCCAGAGAGCCGGGATGCGCAAGCCGT
195 AAACGA----GCGAGCGGAC--G-GG-CACTGAA-CCGGCCAGAGAGACGGGACGCGCAAGCCGT
* * * * *
18348488 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCTAATGCCATTTTT
251 GGATCAATAGGGTGGTAGGTGGGTTTAAGCACATCTTCAAATTTCTACGTGCCAATGCCATTTTT
18348553 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCC
316 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCC
* * * *
18348618 ATTTT-TATTTTTCAAGATTTTTGACACTTTTTGCGGTTCGGGATTTTTTAAAATATTTTCAGAA
381 ATTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATATTTTCAGAA
* *
18348682 GGACT-TTTTAC-CCCAAACTTGGTAGACGTGATCCGCGTATTTTTGTTGGCATGCACAAAAAAA
446 GG--TGTTTTACTCCCAAACTTGGCAGACGAGATCCGCGTATTTTTGTTGGCATGCA-AAAAAAA
* * * * *
18348745 TTCACCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAGAAAGTGTCCCTATTTCGGA
508 TTCACCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18348810 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTC
573 AACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGACTTC
* *
18348875 TCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGGCAAGTACCAGCACCCATTGCACATCAT
638 TCAAGGTTTGACAAGGGATAGGGGGCCAATATAAGGGGCAAGTACCAGCACCCATCGCACATCAT
* * ** * * *
18348940 GTGCGCACACCCCCCCGGCCCTCTCGATCGCTGGAACCCTAACGCCTCCGGTCAGGTTCTCTGGC
703 GTGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAACGCCTCCGGTCAGGTTCTCCGAC
* * *
18349005 GATGCTCCGAAGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCCCATGCCGGAGCCCAGCAT
768 GATGCTCCGAAGATGGTGCCCCGACGAAGAAAAAT--AG-ACCAGCACATGCCCGAGCCCAGCAT
* ** *
18349070 TTACTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
830 GTACTACCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
18349127 CTAAGCCAAC
Statistics
Matches: 2275, Mismatches: 283, Indels: 183
0.83 0.10 0.07
Matches are distributed among these distances:
857 13 0.01
858 427 0.19
859 4 0.00
860 7 0.00
861 35 0.02
862 2 0.00
863 1 0.00
864 5 0.00
865 86 0.04
866 92 0.04
867 37 0.02
868 2 0.00
869 2 0.00
870 1 0.00
871 2 0.00
872 26 0.01
876 2 0.00
877 2 0.00
881 2 0.00
882 2 0.00
884 4 0.00
885 2 0.00
886 4 0.00
887 2 0.00
888 1 0.00
889 2 0.00
890 3 0.00
891 109 0.05
892 631 0.28
893 162 0.07
896 12 0.01
897 70 0.03
898 7 0.00
899 277 0.12
900 169 0.07
901 1 0.00
902 68 0.03
903 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
TGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGAGCATGCGGGCGCTCAACCGGCCAA
AGGGGCGGGATGCACAAGCCGGGGATCAACCGGGTACCCCTTTCCGTGCTATCGATCCTACCACC
GCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGA
AACGAGCGAGCGGACGGGCACTGAACCGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCAATAG
GGTGGTAGGTGGGTTTAAGCACATCTTCAAATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTTCTATT
TTTCAAGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATATTTTCAGAAGGTGTTTTAC
TCCCAAACTTGGCAGACGAGATCCGCGTATTTTTGTTGGCATGCAAAAAAAATTCACCTAAAAAC
TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGACA
AGGGATAGGGGGCCAATATAAGGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCGGCCCCCCCGATCGCCAGAACCCCAACGCCTCCGGTCAGGTTCTCCGACGATGCTCCGAAGA
TGGTGCCCCGACGAAGAAAAATAGACCAGCACATGCCCGAGCCCAGCATGTACTACCACAACCCT
CGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAA
Found at i:18350541 original size:26 final size:26
Alignment explanation
Indices: 18350490--18350542 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18350480 CCGGTCTGAT
***
18350490 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18350516 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18350542 C
1 C
18350543 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18351331 original size:26 final size:26
Alignment explanation
Indices: 18351280--18351332 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18351270 CCAGTCAAAT
* **
18351280 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACGGGCAATGAACTCCATATG
*
18351306 CTTAGACGGGGAATGAACTCCATATG
1 CTTAGACGGGCAATGAACTCCATATG
18351332 C
1 C
18351333 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGCAATGAACTCCATATG
Found at i:18353032 original size:845 final size:847
Alignment explanation
Indices: 18351678--18353938 Score: 2898
Period size: 845 Copynumber: 2.6 Consensus size: 847
18351668 GCCTTCATGT
* * * *
18351678 GAAGTTTCTTGGCAAGACGACT-AGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTTG
1 GAAGTTTCATGGCAAGACGACTCA-TTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGG-TTG
*
18351742 GGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
64 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
** *
18351807 TTTGTTGGCATGCACAAAAATGTTCAGCTAAAAACT-AGAAGTGTACAAGATTCTGTGACCATTT
129 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA-AAGTGTACAAGATTTTGTGACCATTT
* *
18351871 GAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAAT
193 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
18351936 GCTCTTTAAGGGGGTGTGAGTTCTTGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
258 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * * *
18352001 TACCAGCACCAATCACACATCATGTGCGTACACCCCCTCGGCCCCC-CTGATCGTCGGATCCTCA
323 TACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCTC-GATCGTCAGAACCCCA
* * * * *
18352065 ATGCTG-TCAGTCAGGTTCTTCGACGATGCTCCGACGATGGTGTCCCAGCGAAGAAAAATGCGGC
386 ATGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCCGCGAAGAAAAATGTGGC
* ** * * * *
18352129 GCCAGCACATGTTCGAGCCCAGCATGTTCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTTG
449 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
*
18352194 GAATGAACTCCGTGTGCCTAAGTCAACCCACGA-A-A-CA-A-GCG-TGCATCCCGGGGATCGGT
514 GAATGAACTCCGTATGCCTAAGTCAACCCACGAGACACCAGAGGCGATGCATCCCGGGGATCGGT
* *
18352253 CGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAATCTGATCTGATCTTAGACT
579 CGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGACT
* * *
18352318 AGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAATGAGCGGGCGGGCGGGCTGACAAGCACT
644 GGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGC-GGCAAGCACT
* * * *
18352383 ACGTCGGCCAGAGAGACAGGATGTGTAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCAC
708 ACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
18352448 ATCTTCTTATTTCTGGGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAA
773 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
18352513 GCCTTCACGT
838 GCCTTCACGT
* *
18352523 GAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTCTGG
1 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGT-TGG
* * *
18352588 GATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCCCCAAACTTGGTAGACATGATCTTTGTATTT
65 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
18352653 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGA-TTTGTGACCATTTGA
130 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
* * *
18352717 AAAAAGTGTCCCTACTTT-AGACACTTTAATGGCTACTGGTAGCAAACCTCTAAAATCTCAAATG
195 AAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * * *
18352781 CTCTTTAAGGGGGGGGTGAGTTCTAGAGGTTTGATGTGGGATAGTGGGCCAATATAAGGCCCAAG
259 CTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
18352846 AACCAGCACCCATCGCACATCATGAGCGCACACCCCCTCGGCCCCCCCAATCG-CTAGAACCCCA
323 TACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCTCGATCGTC-AGAACCCCA
* * * * **
18352910 ATACCGCTGGTCAGGTTCTCCGGCGATACTCCGACGATGGTGCCCCTGCAAAGAAAAATACGGCA
386 ATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-GCGAAGAAAAATGTGGCA
* *
18352975 CCAGCACACGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
450 CCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* *
18353040 AATGAACTCTGTATGCCTCAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGATCAGAGGG
515 AATGAACTCCGTATGCCTAAGTCAACCCACG--A-GA-------------CA--C---CAGA--G
* ** * ** *
18353105 GTTGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTATCGTAA
557 G--CGAT--GCATCCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAA
* * * ** ***
18353170 CCCTCATTTTGGTCTGATC-TAGACTGGGAATGAACTCTGTATGCCTAAGAGAACCGTTGAAACG
618 CCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACG
* * * *
18353234 AGCGGGCGGG-GGGCGGGAGGCCACTACGTCGACCAGAGAGACAGGATGCGCAAGCCGTGGATCG
683 AGCGGGCGGGCGGGCGGCAAG-CACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCG
* * *
18353298 ATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCT
747 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
*
18353363 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACAT
812 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
18353399 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGGGGTTCGG
1 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTT-GG
** *
18353464 GATTTTTTAAAAAAATTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
65 GATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * *
18353529 TTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTTGAAAGTGTGCAAGATTTTGTCACCATTT
129 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCAAAGTGTACAAGATTTTGTGACCATTT
* * *
18353594 GAAAAAAGTGTCCCCATTTTAGACACTATAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
193 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
18353659 GCTCTTTAAGGGGGTGTGAGTTCTCGTGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAG
258 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
18353724 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCACGG-CCCCTCGATCGTCAGAACCCCAA
323 TACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCTCGATCGTCAGAACCCCAA
* * * * * ** *
18353788 TGTCGCCGGTCAGGTTCTTCGGCGATGCTCTGACGATGGTGCCTGGTGAAGAAAAATGTGGCACC
387 TGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGCGAAGAAAAATGTGGCACC
* * * * *
18353853 AGAACATGTCCGAGCCCAGCATGTGCTGCCACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAA
452 AGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
18353918 TGAACTCCGTATGCCTAAGTC
517 TGAACTCCGTATGCCTAAGTC
18353939 CCCCTCTGTG
Statistics
Matches: 1230, Mismatches: 137, Indels: 67
0.86 0.10 0.05
Matches are distributed among these distances:
844 84 0.07
845 398 0.32
846 4 0.00
847 1 0.00
849 1 0.00
863 1 0.00
869 2 0.00
870 1 0.00
873 1 0.00
875 5 0.00
876 297 0.24
877 189 0.15
878 169 0.14
879 77 0.06
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (847 bp):
GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTGGG
ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCAGAACCCCAATGCC
GCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGCGAAGAAAAATGTGGCACCAGCA
CATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAGACACCAGAGGCGATGCATCCCGGGGATCGGTCGGGTCC
CCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATG
AACTCTGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGCAAGCACTACGCCGGC
CAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GT
Found at i:18354729 original size:802 final size:802
Alignment explanation
Indices: 18353134--18354740 Score: 2474
Period size: 802 Copynumber: 2.0 Consensus size: 802
18353124 GATCGATCGG
* * * ** *
18353134 GTCCCCCTCTGCGTGCTATCGATCCTGCTATCGTAACCCTCATTTTGGTCTGATCTAGACTGGGA
1 GTCCCCCTCTGCGTGCTATCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATCTAGACTGGGA
* *** * * *
18353199 ATGAACTCTGTATGCCTAAGAGAACCGTTGAAACGAGCGGGCGGGGGGCGGGAGGCCACTACGTC
66 ATGAACTCTGTATGCCTAAGACAACCGACAAAACGAGCGGACGGCGGGCGGGAGGCCACTACGCC
* *
18353264 GACCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTT
131 GACCAGAGAGACAGGATGCGCAAGCCGTGGATCCATAGAGTGGTAGGTGGGTTTAGGCAAATCTT
*
18353329 CATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
196 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
18353394 CACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGGGG
261 CACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGGGC
** *
18353459 TTCGGGATTTTTTAAAAAAATTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT
326 TTCAAGATTTTTTAAAAAAATTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCAT
* *
18353524 GTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTTGAAAGTGTGCAAGATTTTGTCAC
391 GTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTTCAAAGTGTACAAGATTTTGTCAC
*
18353589 CATTTGAAAAAAGTGTCCCCATTTTAGACACTATAATAGCTACTGGCAGCAAACCTGTAAAATCT
456 CATTTGAAAAAAGTGTCCCCATTTCAGACACTATAATAGCTACTGGCAGCAAACCTGTAAAATCT
* *
18353654 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGTGGTTTGACGAGGGATAGGGGGCCAATATAAGGG
521 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGCCCAATATAAGGG
*
18353719 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACGGCCCCTCGATCGTCAGAACC
586 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACGGCCCCTCGATCGTCAAAACC
* * * * * * * **
18353784 CCAATGTCGCCGGTCAGGTTCTTCGGCGATGCTCTGACGATGGTGCCTGGTGAAGAAAAATGTGG
651 CCAATGCCACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGACGAAGAAAAATGTGG
* * *
18353849 CACCAGAACATGTCCGAGCCCAGCATGTGCTGCCACAACCCTTGGTCCGGTCCGATCTTAGACTG
716 CACCAGAACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTG
18353914 GGAATGAACTCCGTATGCCTAA
781 GGAATGAACTCCGTATGCCTAA
* *
18353936 GTCCCCCTCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGG
1 GTCCCCCTCTGCGTGCTATCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATC-TAGACTGGG
*
18354001 AATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAGCGGACGTGCGGGCTGGTGA-G-CACTA
65 AATGAACTCTGTATGCCTAAGACAACCGACAAAACGAGCGGACG-GCGGGC-GG-GAGGCCACTA
* * * *
18354064 CGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCCATAGAGTGGTAGGTGGG-TTAGGCACA
127 CGCCGACCAGAGAGACAGGATGCGCAAGCCGTGGATCCATAGAGTGGTAGGTGGGTTTAGGCAAA
* **
18354128 TCTTCTTATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
192 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
18354193 CCTTCA-AGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTT
257 CCTTCACA-TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTT
* * ** *
18354257 TGTGCTTTAAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
321 TGGGCTTCAAGATTTTTTAAAAAAATTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
* *
18354321 TCCATGTATTTTTGTTGGCATGCATAAAAA-ATTCCGCTAAAAAC-TCAAAGTGTACAAGATTTT
386 TCCATGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTTCAAAGTGTACAAGATTTT
* *
18354384 GTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
451 GTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTATAATAGCTACTGGCAGCAAACCTGTAA
* **
18354449 AATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGGATAGGGGCCCAATAT
516 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGCCCAATAT
*
18354514 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCC-CGGCCCCCTCGATTGT
581 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCACGG-CCCCTCGATCGT
**
18354578 CAAAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAA
644 CAAAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGAAGAA
* *
18354643 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTCTGATC
708 AAATGTGGCACCAGAACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTCCGATC
18354708 TTAGACTGGGAATGAACTCCGTATGCCTAA
773 TTAGACTGGGAATGAACTCCGTATGCCTAA
18354738 GTC
1 GTC
18354741 AACCCATGAA
Statistics
Matches: 729, Mismatches: 68, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
800 185 0.25
801 71 0.10
802 221 0.30
803 188 0.26
804 59 0.08
805 3 0.00
806 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (802 bp):
GTCCCCCTCTGCGTGCTATCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATCTAGACTGGGA
ATGAACTCTGTATGCCTAAGACAACCGACAAAACGAGCGGACGGCGGGCGGGAGGCCACTACGCC
GACCAGAGAGACAGGATGCGCAAGCCGTGGATCCATAGAGTGGTAGGTGGGTTTAGGCAAATCTT
CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGGGC
TTCAAGATTTTTTAAAAAAATTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCAT
GTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTTCAAAGTGTACAAGATTTTGTCAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTATAATAGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGCCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACGGCCCCTCGATCGTCAAAACC
CCAATGCCACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGACGAAGAAAAATGTGG
CACCAGAACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAA
Found at i:18356019 original size:223 final size:223
Alignment explanation
Indices: 18355631--18356035 Score: 612
Period size: 223 Copynumber: 1.8 Consensus size: 223
18355621 CTCTGTACGC
* * *
18355631 CTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAACCGGCCAGAGGGGCAGGATGCGCAAGCC
* * *
18355696 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGCCCAGTCCA
66 AGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGCCCAGTCCA
* * *
18355761 ATGTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCTGGTGGACGGGTG
131 ATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCTGGTGGACGGGTG
18355826 GGCGGGCACTACGTATGCCTGGTTGTGA
196 GGCGGGCACTACGTATGCCTGGTTGTGA
* ** * *
18355854 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGGGGGGCAGGATGCGCAAGTC
1 CTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAACCGGCCAGAGGGGCAGGATGCGCAAGCC
** * * *
18355919 AGGGATCGGTCAGGTCCCCCTCTGCGTGCTGTTGATCCTGCTACCGCAACCCTCGGTCTAGTCTA
66 AGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGCCCAGTCCA
* * *
18355984 ATCTTAGACTGGAAATGAACTGCGTATGCCTAAGCCAATCGATGAAACGAGC
131 ATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
18356036 GGGCGGGCGG
Statistics
Matches: 160, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
223 160 1.00
ACGTcount: A:0.22, C:0.29, G:0.31, T:0.18
Consensus pattern (223 bp):
CTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAACCGGCCAGAGGGGCAGGATGCGCAAGCC
AGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGCCCAGTCCA
ATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCTGGTGGACGGGTG
GGCGGGCACTACGTATGCCTGGTTGTGA
Found at i:18356735 original size:26 final size:26
Alignment explanation
Indices: 18356699--18356751 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18356689 CTGGTCTGAT
18356699 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
18356725 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
18356751 C
1 C
18356752 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:18357613 original size:130 final size:130
Alignment explanation
Indices: 18357456--18357719 Score: 519
Period size: 130 Copynumber: 2.0 Consensus size: 130
18357446 GCGCACACCC
18357456 CCCTAGGCCCCCCGATCGTCGGAACCCCAATGCCGTTGTTCAGGTTCTCCGGCGATGTTCCGACG
1 CCCTAGGCCCCCCGATCGTCGGAACCCCAATGCCGTTGTTCAGGTTCTCCGGCGATGTTCCGACG
18357521 ATGATGCCCCGGTGAAGAAAAATGCGACACCAACACAAGCTCGAGCCCAGCATATGCTGCCATAA
66 ATGATGCCCCGGTGAAGAAAAATGCGACACCAACACAAGCTCGAGCCCAGCATATGCTGCCATAA
18357586 CCCTAGGCCCCCCGATCGTCGGAACCCCAATGCCGTTGTTCAGGTTCTCCGGCGATGTTCCGACG
1 CCCTAGGCCCCCCGATCGTCGGAACCCCAATGCCGTTGTTCAGGTTCTCCGGCGATGTTCCGACG
*
18357651 ATGGTGCCCCGGTGAAGAAAAATGCGACACCAACACAAGCTCGAGCCCAGCATATGCTGCCATAA
66 ATGATGCCCCGGTGAAGAAAAATGCGACACCAACACAAGCTCGAGCCCAGCATATGCTGCCATAA
18357716 CCCT
1 CCCT
18357720 CGGTCCGATC
Statistics
Matches: 133, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 133 1.00
ACGTcount: A:0.24, C:0.34, G:0.24, T:0.18
Consensus pattern (130 bp):
CCCTAGGCCCCCCGATCGTCGGAACCCCAATGCCGTTGTTCAGGTTCTCCGGCGATGTTCCGACG
ATGATGCCCCGGTGAAGAAAAATGCGACACCAACACAAGCTCGAGCCCAGCATATGCTGCCATAA
Found at i:18358482 original size:26 final size:26
Alignment explanation
Indices: 18358442--18358494 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18358432 CTGATCCAAT
* *
18358442 CTTAGACTGGAAATGAACTCTATATG
1 CTTAGACGGGAAATGAACTCCATATG
*
18358468 CTTAGACGGGGAATGAACTCCATATG
1 CTTAGACGGGAAATGAACTCCATATG
18358494 C
1 C
18358495 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGAAATGAACTCCATATG
Found at i:18361575 original size:26 final size:26
Alignment explanation
Indices: 18361539--18361591 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18361529 CTGTTCCGAT
18361539 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
18361565 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
18361591 C
1 C
18361592 CTATGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:18364228 original size:26 final size:26
Alignment explanation
Indices: 18364188--18364240 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18364178 CTCATCCGAT
*
18364188 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
18364214 CTTAGAC-TGGTAATGAACTCCGTATG
1 CTTAGACTTGG-AATGAACTCCGTATG
18364240 C
1 C
18364241 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:18366056 original size:808 final size:808
Alignment explanation
Indices: 18364489--18366104 Score: 2382
Period size: 808 Copynumber: 2.0 Consensus size: 808
18364479 GGATCGATAG
*
18364489 GGTGGTAGGTGGGTTTAGGCCCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAA
*
18364554 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACCACTCGTTTTCTATT
* * * * *
18364619 TTTCACGATTTTTGAAACTTTTTACGGTTCTAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG
131 TTTCACGATTATTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGAAATTTGGG
*
18364684 CCGCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGTATACATAAAAAAATTCAGCTAAAAA
196 CCGCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATACATAAAAAAATTCAGCTAAAAA
** * * *
18364749 GTCGAAGTGTACAAGATTTTGTTACCGTTTGAAAAAAGTGCCCCCATTTTAGACACTTTAATGGC
261 CACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGC
* *
18364814 TACTGGCAACAAACCTATAAAATTAGAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGAT
326 TACTGGCAACAAACCTATAAAATTACAAATCCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGAT
*
18364879 AAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCC
391 AAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCGCACACCC
* *
18364944 CCCGGCCACCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGAT
456 CCCGGCCACCCGATCACCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGACGAT
*
18365009 GGTGTCCCAGCGAAGAAAAATACGGCACCAGCACATGCCCAACCCCAGCATGTGCTACCGCAACC
521 GGTGGCCCAGCGAAGAAAAATACGGCACCAGCACATGCCCAACCCCAGCATGTGCTACCGCAACC
* * * * *
18365074 CTCGGTCCGATCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
586 CTCGGCCCGACCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG
* * * * *
18365139 CGTGTGGGCGCTCAACCGGCCAGAGGGGCTAGATGCGTAAGCCGGGGATCAATCGGGTCCCCCTC
651 CGTGCGGGCGCTCAACCGGCCAGAGGGGCGAGATGCGCAAACCGAGGATCAATCGGGTCCCCCTC
* * ** ** * *
18365204 TGCGTGCTGTCGATCCTGTTGCCACAACCCTCAGTCTGGTCTGATCTTAGATTAGGAATGAGCT-
716 TACGTGCTGTCAATCCTACTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTC
* *
18365268 TCGTATGCCTAAGCCAACCGATGAAACGA
781 T-GTATGCCTAAGCCAACCAACGAAACGA
* * * * *
18365297 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTTGCCAATTCCATTTTTATTGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAA
* *
18365362 AATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACCACTCGTTTTCTATT
18365427 TTTCACGATTATTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTCGGAAGAAATTGTG
131 TTTCACGATTATTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTT-GGAAGAAATT-TG
* *
18365492 GGCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAA
194 GGCCGCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATACATAAAAAAATTCAGCTAAA
* * *
18365556 AACACGAAGTGTACAAGATTTTGTGAGCATTTGAAACAAGTGTCCCCATTTCAGACACTTTAATG
259 AACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATG
* * **
18365621 GCTACTGGCAGCAAACCTATAACATCT-CAAATCCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
324 GCTACTGGCAACAAACCTATAAAAT-TACAAATCCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTT
* * ** *
18365685 GATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCACACATCGTGTGTGCACA
388 GATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCGCACA
* ** ** *
18365750 CCCCCCGGCC-CCCGGTCACTGGAACCGTAATGCCGTCAGTCAGGTTCTCCGGTGATGCTCC-AG
453 CCCCCCGGCCACCCGATCACCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGA-
* ** * * *
18365813 CGATGGTGGCCCGGCGAAGAAAAATGGGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGC
517 CGATGGTGGCCCAGCGAAGAAAAATACGGCACCAGCACATGCCCAACCCCAGCATGTGCTACCGC
18365878 AACCCTCGGCCC-AGCCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
582 AACCCTCGGCCCGA-CCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * **
18365942 ACAAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGGGCAAACCGAGGATTGATCGGGTCC
646 ACAAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGAGATGCGCAAACCGAGGATCAATCGGGTCC
** *
18366007 CCCTCTACGTGCTAG-CAATCCTACTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAAT
711 CCCTCTACGTGCT-GTCAATCCTACTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTAGGAAT
*
18366071 GAACTCTGTTTGCCTAAGCCAACCAACGAAACGA
775 GAACTCTGTATGCCTAAGCCAACCAACGAAACGA
18366105 CCAGGCAGGC
Statistics
Matches: 719, Mismatches: 82, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
807 2 0.00
808 462 0.64
809 249 0.35
810 6 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (808 bp):
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACCACTCGTTTTCTATT
TTTCACGATTATTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGAAATTTGGG
CCGCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATACATAAAAAAATTCAGCTAAAAA
CACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGC
TACTGGCAACAAACCTATAAAATTACAAATCCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGAT
AAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCGCACACCC
CCCGGCCACCCGATCACCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGACGAT
GGTGGCCCAGCGAAGAAAAATACGGCACCAGCACATGCCCAACCCCAGCATGTGCTACCGCAACC
CTCGGCCCGACCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG
CGTGCGGGCGCTCAACCGGCCAGAGGGGCGAGATGCGCAAACCGAGGATCAATCGGGTCCCCCTC
TACGTGCTGTCAATCCTACTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTC
TGTATGCCTAAGCCAACCAACGAAACGA
Found at i:18366809 original size:26 final size:26
Alignment explanation
Indices: 18366770--18366822 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18366760 CTGGTCTAAT
*
18366770 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18366796 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18366822 C
1 C
18366823 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18368082 original size:902 final size:899
Alignment explanation
Indices: 18365898--18371118 Score: 6973
Period size: 902 Copynumber: 5.8 Consensus size: 899
18365888 CCAGCCCGAT
**
18365898 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAATGAGTGTGCGGGCGCTCAGC
* * * * * *
18365963 CGGCCAGAGGGGCGGGATGGGCAAACCGAGGATTGA-TCGGGTCCCCCTCTACGTGCTAG-CAAT
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCT-GCCGAT
* * *** * * *
18366026 CCTACTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTTTGCCTAAGCC
128 CCTGCTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
18366091 AACCAACGAAACGA-C---CAGGCAGGCGTGCGGGCACTACGCGGGCCAGAGAGACGGGATGTGC
193 AACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
18366152 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
18366217 CATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * * * * *
18366282 ATGACTCATGTTCTATTTTTCATGATTTTTGAAACATTTTGCGGTTCGGGAGTTGTTT-AAATTT
388 ACGACTCGTTTTCTATTTTTCATGATTTTAGAAACTTTTTACGGTTC-AGAATTTTTTAAAATTT
* * * *
18366346 TTTCGAAAGGAGTTTTGGCCCCATACTTGGTACACGTGATCCTTGTATTTTTTTTGGCATGTACA
452 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* * *
18366411 AAAAACTTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCAT
517 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18366476 TTCAGACACTTTAATCGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** * * *
18366541 GAGTTCTTAAGGTTTGATGAGAGATAGGGGG-CAATATAAGGGCCAAATACCAGCACCCATCGCG
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
18366605 CATCATTTGCGCACA-CCTCCCGGCCCCCCCGATTGTCGAAACCTCAATGTCGTCGGTCAGGTTC
712 CATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTC
* * * * * * *
18366669 TCTGGCGATGCTCCGATGATGGTGCCCTGGCGAAGACAAATGCAGCACCAGCACATGTCCAAGCC
776 TCCGGCGATGCTCCG-CGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* * **
18366734 CAGCATGTGCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
840 CAGCATGTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACT-GGAATGAACTCCGTATG
* * * *
18366796 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACAAACGAGTGTGTGGGCGCTCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAATGAGTGTGCGGGCGCTCAGCC
* * *
18366861 GG-TAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGTGTGCTGCCGATCTT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCCT
** * * * *
18366925 GCTACCACAACCCTCGGTCCGATCTAATCTTATATTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
18366990 CGACGAAATGAGCGTA-CGGGCGGGCGGGCGGGCACTACGCAGGCCAGAGAGACGGGATGCGCAA
196 CGACGAAACGAGCG-AGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18367054 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
18367119 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18367184 GACTCGTTTTCTATTTTTCACGATTTTAGAAAATTTTTATGGTTCAGAATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCATGATTTTAGAAACTTTTTACGGTTCAGAATTTTTTAAAA-TTTTT
* * * * * *
18367249 TC-GAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGTTCCTTGTACTTTTATTGGCTTGCATAAA
454 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * *
18367313 AAAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18367378 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
18367443 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
18367508 TCATGTACGCACACCCCCCGGGCCCCCCGATTGTCGAAACCCCAATTCCGCCGGTCAGGTTTTCC
714 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCC
* ** * * * *
18367573 GGCGATACTCCTGCGATGGTGCCCCGACGATGAAAAATACAGCAGCAGCACATGCCTGAG-CCAC
779 GGCGATGCTCC-GCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA-
* * * * * * *
18367637 GCATGTGCTGCCGCAAACCTCAGTTCGATCTGATTTTAGATTAGGAACGAACTCCGTTTG
842 GCATGTGCTGCCGCAACCCTC-GGTCGATCCGATCTTAGACT-GGAATGAACTCCGTATG
* * * ** *
18367697 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCCACCCACAAAATGAGCATGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAATGAGTGTGCGGGCGCTCAGC
* * * * * *
18367762 CGGCAAGAGGGGCGGGATGTGCAAGCCGGGGATCG-GTCGGGT-CCCCTATGCGTGTTGTCGATC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
18367825 CTGTTGCCACAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCA
129 CTGCTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18367890 ACTGATGAAACGAGCGAGCGGGAGGGCGGGCGGGCACTACGCCGACCAAAGAGACGGGATGCGCA
194 ACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
18367955 AGCCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18368020 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
18368085 TGATTCGTTTTCTATCTTTCATGATTTTCA-AAACTTTTTACGGTT-TGAGATTTTTTAAAATTT
389 CGACTCGTTTTCTATTTTTCATGATTTT-AGAAACTTTTTACGGTTCAGA-ATTTTTTAAAATTT
* * *
18368148 TTTCGGAAGGATTTTTGGCCCAAAACATT-GTAGACGTGATCCTTGTATTTTTTTTGGCATGCAT
452 TTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* *
18368212 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAGAAAGTGTCCCCA
516 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
18368277 TTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
581 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
18368342 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
646 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * **
18368407 ACATCATGTGCGCACACTCCCCCCGACCCCCCGATCATCGAAACCTTAATGCCGTCGGTCAGGTT
711 ACATCATGTGCGCACAC-CCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTT
*
18368472 CT-C--CG--G-T----GATGGTGCCCCGGTGAAGAAAAATAC-GACACCAGCACATGCCCGAGC
775 CTCCGGCGATGCTCCGCGATGGTGCCCCGGTGAAGAAAAATGCAG-CACCAGCACATGCCCGAGC
* * *
18368526 CCAGCATGTGCTGTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
839 CCAGCATGTGCTGCCGCAACCCTCGGTCGA-TCCGATCTTAGACT-GGAATGAACTCCGTATG
* * * * **
18368589 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAATAAGCGTGCGGGCTTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CAAATGAGTGTGCGGGCGCTCAGC
** *
18368654 CGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATC-ATCTGGGTCCTCCTCTGCGTGCTGCCGATC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CTGGGTCCCCCTCTGCGTGCTGCCGATC
* *
18368718 GTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCC
129 CTGCTACCACAACCCTCAATCCGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCC
* * * * *
18368782 AACCGACGAAACGAGCGGGTGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCAC
193 AACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * ***
18368847 AAGCCGTTGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGTGCGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
** *
18368912 CATTTTTATGGCTTGTAAATTTGTACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18368977 ACCACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCA-AGATTTTTTAAAATTT
388 ACGACTCGTTTTCTATTTTTCATGATTTTAGAAACTTTTTACGGTTCAGA-ATTTTTTAAAATTT
* * * *
18369041 TTTCAGAAGGATTTTTGGCCCTAAACATT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
452 TTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
*
18369105 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCA
516 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
18369170 TTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
581 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
18369235 TGAGTTCTCGAGGTTTGACGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
646 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
18369300 ACTTCATGTGCGCACA-CCCCCCGGCCCCCCGGTCG-CCAGAACCCCTATGCCGTCGGTCAGGTT
711 ACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGA-AACCCCAATGCCGTCGGTCAGGTT
* * *
18369363 CTCCGGCGATGCTCCGACGATGGCGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGT
775 CTCCGGCGATGCTCCG-CGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGC
* * *
18369428 CCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGCAATGAACTCCGTATG
839 CCAGCATGTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACTGG-AATGAACTCCGTATG
* *
18369491 CTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAA--A---------CG---AG-C
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAATGAGTGTGCGGGCGCTCAGCC
** * *
18369541 GTTCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTACCGATCTT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCCT
* *** * * *
18369606 GCTGCTGTAACCCTCAATCCGGTCTCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCAAAC
131 GCTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
18369671 CGACGAAACGAGCGAGCGGGCGGTCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
196 CGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * ** *
18369736 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGTGTGCCACTGCCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
18369801 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
18369866 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCAGTATTTTTTAAAATTTTTTT
391 ACTCGTTTTCTATTTTTCATGATTTTAGAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTC
* *
18369931 GGAAGGAGTTTCGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
456 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
18369996 AATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCA
521 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
18370061 GGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
586 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18370126 TCTCGAGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
651 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
18370191 ATGTGCGCACACCCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTCCG
716 ATGTGCGCACA-CCCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCG
* ** * *
18370256 ACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAAC
780 GCGATGCTCC-GCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGC
* * *
18370321 ATGTGCTACAG-AAACC-C--TC-A---G-TC-----C-GG--T---CT--G-AT-
844 ATGTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGAATGAACTCCGTATG
* * *
18370353 CTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAATGAGTGTGCGGGCGCCCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAATGAGTGTGCGGGCGCTCAGC
* * *
18370418 CGGCCAGAGGGGCGGAATGCGCAAG-C-GGGATCGACTGGGACCCCCTCTGCGTGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * * * *
18370481 TGCTACTGCAACCCTCCATCTGATCTGATCTTAGACTAGGAATGAATTCCATATGCCTAAGCCAA
130 TGCTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * *
18370546 CCGACGAAACGAGCG-GCCGGGCTAGCGGCCGGGCACTACGTCGGCCAG-GTAGACGGGATGCGC
195 CCGACGAAACGAGCGAG-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAG-AGACGGGATGCGC
* *
18370609 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGG
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
18370674 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** *
18370739 ACGACTCGTTTTCTATTTTTCATGATTTTTA-AAACTTTTTGGGGTTCAGGATTTTTTAAAATTT
388 ACGACTCGTTTTCTATTTTTCATGA-TTTTAGAAACTTTTTACGGTTCAGAATTTTTTAAAATTT
* * * *
18370803 TTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCATACACA
452 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
** *
18370868 AAAGCATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
517 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18370933 TTTAGACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTTTTTAAGGGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
18370998 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCCAAGTACCAGCACCCATGGCA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
18371063 CATCATGTGCGCACACCCCCCCTCCCGGCTTCTCCGATCGTCGAAACCCCAATGCC
712 CATCATGTGCGCACA---CCCC-CCCGGC-CCCCCGATCGTCGAAACCCCAATGCC
18371119 ACCGACCATG
Statistics
Matches: 3845, Mismatches: 400, Indels: 174
0.87 0.09 0.04
Matches are distributed among these distances:
862 39 0.01
863 4 0.00
864 1 0.00
865 1 0.00
866 2 0.00
869 1 0.00
872 2 0.00
873 1 0.00
874 2 0.00
875 2 0.00
876 576 0.15
877 6 0.00
878 29 0.01
879 6 0.00
880 22 0.01
884 2 0.00
885 2 0.00
886 609 0.16
887 8 0.00
888 107 0.03
889 2 0.00
890 3 0.00
891 44 0.01
892 174 0.05
893 569 0.15
894 2 0.00
895 1 0.00
896 114 0.03
897 27 0.01
898 40 0.01
899 8 0.00
900 413 0.11
901 232 0.06
902 717 0.19
903 77 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAATGAGTGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCCT
GCTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTAGAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGG
CGATGCTCCGCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGAATGAACTCCGTATG
Found at i:18368592 original size:26 final size:26
Alignment explanation
Indices: 18368563--18368615 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18368553 CCAGTCCGAT
18368563 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18368589 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18368615 C
1 C
18368616 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18369501 original size:26 final size:26
Alignment explanation
Indices: 18369465--18369517 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18369455 CTGGTCCAAT
18369465 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
18369491 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
18369517 C
1 C
18369518 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:18371654 original size:26 final size:26
Alignment explanation
Indices: 18371625--18371677 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18371615 CCGGTCCGAT
* * *
18371625 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
18371651 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
18371677 C
1 C
18371678 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:18373546 original size:26 final size:26
Alignment explanation
Indices: 18373517--18373569 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18373507 CCGGTCCGAT
18373517 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18373543 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18373569 C
1 C
18373570 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18374434 original size:26 final size:26
Alignment explanation
Indices: 18374405--18374457 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18374395 CCGGTCCGAT
*
18374405 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18374431 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18374457 C
1 C
18374458 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18374912 original size:892 final size:889
Alignment explanation
Indices: 18372781--18375333 Score: 3486
Period size: 900 Copynumber: 2.8 Consensus size: 889
18372771 TGTGCCGCCG
*
18372781 CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGCCAATCGATGA
1 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAATCGATGA
* * *
18372845 AATGAGCGGACAAGGGG-A--CGGGCACTACGCCGGCCAAAGAAACGGGATGCGCAAGCCGTGGA
65 AACGAGCGGAC--GGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
18372907 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACGTGCCAATGCCATTTTTATG
128 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-CGCGTGCCAATGCCATTTTTATG
* *
18372972 GCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
18373037 TTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGA
257 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* * *
18373102 GTTTTGGCCCCAAACTTGGTAGACATGATCAC-TGTATTTTTCTTGGCATGCAAAAAAAAAATTC
322 GTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTTTTGGCATGC--ACAAAAAATTC
* *
18373166 ACCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
384 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
18373231 TTTAATGGTTACTAGCTGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCG
449 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
18373296 AGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAG-AAATAGCACCCATCGAACATCATGT
514 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACA-GGCACCCATCGACCATCATGT
*
18373360 GCGCACACCCCCCGGCCCCCCAGATCACCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGAT
578 GCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGATCAGGTTCT-C-ACGA-
* * * * * *
18373425 GCTCCGGTGATGGTGGCCTGGTGAAGAAAAATGCAGTACCAGCACATGCTCGAGCCCAGCATGTG
639 G--CC-G-GATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
18373490 CTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
700 CTG-CGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * *
18373555 ATGAACTCCGTATGCCTAAGTCAACCCACGGAATAAGCGTGCGGGTGCTCAGTCGGCCAAAGGGG
764 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGTCAGCCAAAGGGG
* * *
18373620 CAGGATGCGTAAGCCGGGGATCGACTGGGTACCCCTCTACGTGCTGTCGATCCTACTGCCA
829 CAGGATGCGCAAGCCAGGGATCGACTGGGTACCCCTCTACGTGCTGGCGATCCTACTGCCA
* * * * * * *
18373681 CAACCCTCGGTCTGATCCAATCTTAGATTGGGAATTAACTCCGTATGGCTAAGCCAATCGACGAA
1 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGATGAA
* * * * * *
18373746 ACGAACGGA-AGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCCCAAGCAGTGGATCG
66 ACGAGCGGACGGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
18373810 CTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGACGTGCCAATGCCATTTTTATGGCT
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCG-CGTGCCAATGCCATTTTTATGGCT
18373875 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** * *
18373940 TATTTTTCATGATTTTTGAAACTTTTTGGGGTTCGGGATTTTTTAAATTTTTTTTC-GAAGGAGT
260 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA-ATTTTTTCGGAAGGAGT
*
18374004 TTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCT
324 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA-ATTCAGCT
*
18374069 AAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
388 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
18374134 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTTTCGAGGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
** * *
18374199 TTGATGAGGGATAGGGGGCTGATATAAGGGTCAAGTACGGGCACCCATCGACCATCATGTGCGCA
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAGGCACCCATCGACCATCATGTGCGCA
* *
18374264 CACCCCCCGGCCCCTCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTC-CG-G-C-GATG
583 CACCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCACGAGCCGGATG
** * * *
18374325 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTGTTGCGGCAACCC
647 GTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC-GTAACCC
* *
18374390 TCGGTCCGGTCCGATCTTAGACTGGGATTGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTA
711 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
*** * * * * *
18374455 TGCCTAAGTCAACCTGTGAAACGAGTGTACGGGCGCTCAG-CAAGCCAGAGGGGCGGGATGGGCA
776 TGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGTC-AGCCAAAGGGGCAGGATGCGCA
* * * * ***
18374519 AGCCAGGGATCGA-TCGGGT-CCTTCTCTGCGTGCTGGCGATCTTGCTGGTG
840 AGCCAGGGATCGACT-GGGTACC-CCTCTACGTGCTGGCGATCCTACTGCCA
* * * *
18374569 TAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGATGAA
18374634 ACGAGCGGACGGGTTGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 ACGAGCGGAC-GG--GGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
18374699 TCGATTGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATT
128 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-GCGTGCCAATGCCATTTTTATG
*
18374764 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
18374829 TTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGAGATTTCTTAAAATTTTTTCGGAAGGA
257 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
** * *
18374894 GTTTTTTCCCCAAACTTGGTAGATGTGATCCTTCTATTTTTGTTT-GCATGCACAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTTGGCATGCACAAAAAATTCAG
* * * *
18374958 CTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATGTGAAAAAAGTATCCCTATTTCAGACACTT
386 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
18375023 TAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAG
451 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
18375088 GATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGG-ACCCATC-ACACATCATGCG
516 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGGCACCCATCGAC-CATCATGTG
* * *
18375151 CGCACACCCCCCGGCCCCCCCGATTGTCGAAACCCCAATGCCGTCGATCAGGTTCTCTAACGATG
579 CGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTC--ACGA-G
* * * *
18375216 CTTCGGTGATGGTGCCCCGGTGAAGAAAAATATGGCACCAACACATGCCTGAGCCCAGGATGTGC
640 C--C-G-GATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * *
18375281 AGCCGTAACCCTCGGTCTGGTCTGACCTTAGACTAGGAATGAACTCCGCATGC
701 TG-CGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18375334 CTAAGTCAAC
Statistics
Matches: 1458, Mismatches: 159, Indels: 70
0.86 0.09 0.04
Matches are distributed among these distances:
887 5 0.00
888 265 0.18
890 3 0.00
891 232 0.16
892 274 0.19
893 4 0.00
894 3 0.00
896 3 0.00
897 3 0.00
898 7 0.00
899 233 0.16
900 324 0.22
901 8 0.01
902 93 0.06
903 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (889 bp):
CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGATGAA
ACGAGCGGACGGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGCGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAGGCACCCATCGACCATCATGTGCGCACAC
CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCACGAGCCGGATGGTGC
CCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCGTAACCCTCGGT
CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGTCAGCCAAAGGGGCAGGATGCGCAAGCCAG
GGATCGACTGGGTACCCCTCTACGTGCTGGCGATCCTACTGCCA
Found at i:18376483 original size:26 final size:26
Alignment explanation
Indices: 18376454--18376506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18376444 CTGGTCCGAT
18376454 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18376480 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18376506 C
1 C
18376507 CTAAGTTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18377897 original size:613 final size:613
Alignment explanation
Indices: 18376728--18377924 Score: 1808
Period size: 613 Copynumber: 2.0 Consensus size: 613
18376718 AAGAGAGATG
* *
18376728 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGTAGATCTTCATATTTCTGCAT
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGAACATCTTCATATTTCTGCAT
* **
18376793 GCCAATGCCATTTTTATGGCTTGTAAATTCACAGAATGGTCCCTTAAGCCTTCACGTGAAGTGTC
66 GCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGAATC
* * *
18376858 AAGGCAAGATGACTCCTTCTCTATTTTTTACGATTTTCAAAACTTTTTACGAGTCGGGATTTTTT
131 AAGGCAAGACGACTCCTTCTCTATTTTTCACGATTTTCAAAACTTTTTACGAGTCGAGATTTTTT
* * ** *
18376923 AAAATTGTTTCGAAAGGAGTTTTATCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGC
196 AAAATTGTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACAAGATCCTTGAATTTTTGGTGGC
* *
18376988 ATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
261 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTG
* *
18377053 TCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
326 TCCCCATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
**
18377118 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTGGCACC
391 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
** *
18377183 CATCGCACATCATCTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCTCAATGCCGCCAGTC
456 CATCGCACATCATCTGCGCACACCCCCCAACCCCCCCGATCACCGAAACCTCAATGCCGCCAGTC
* ** * **
18377248 AGGTTCTCTGGCGATGCTACGGCGATGGGGCCCCGACAAAGAAAAATGTGGTTCCAGCACATGCC
521 AGGTTCTCCGGCGATGCTACGGCGATGGCACCCCGACAAAGAAAAATGAGGCACCAGCACATGCC
18377313 CCAGCCTAAGCCAACCGATGAAATGACA
586 CCAGCCTAAGCCAACCGATGAAATGACA
* **
18377341 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGTGT
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGAACATCTTCATATTTCTGCAT
*
18377406 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGAATC
66 GCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGAATC
* * * * ** *
18377471 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG-GTTTGAGATTTTT
131 AAGGCAAGACGACTCCTTCTCTATTTTTCACGATTTTCAAAACTTTTTACGAG-TCGAGATTTTT
* * * * * * *
18377535 TAAAATTTTTTTGGATGGA-TTTCTGGCCCCAAATTTGGTAGACAAGATCCTTGAATTTTTGTTG
195 TAAAATTGTTTCGAAAGGAGTTT-TAGCCCCAAACTTGGTAGACAAGATCCTTGAATTTTTGGTG
*
18377599 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAGAAAAG
259 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAG
*
18377664 TGTCCCCATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTATAAAATCTCAAGTGCTCTTTA
324 TGTCCCCATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
18377729 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
389 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * *
18377794 CCCATCGCACATCA-GTGCGTACACCCCCCCAACCCCTCCGATCATCGACACC-CTAATGCCGTC
454 CCCATCGCACATCATCTGCGCACA-CCCCCCAACCCCCCCGATCACCGAAACCTC-AATGCCGCC
* * * *
18377857 GGTCAGGTTCTCCGGTGATGCTCCGGCGATGGCACCCCGACGAAGAAAAATGAGGCACCAGCACA
517 AGTCAGGTTCTCCGGCGATGCTACGGCGATGGCACCCCGACAAAGAAAAATGAGGCACCAGCACA
18377922 TGC
582 TGC
18377925 TCAAGCCCAG
Statistics
Matches: 522, Mismatches: 58, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
612 12 0.02
613 510 0.98
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (613 bp):
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGAACATCTTCATATTTCTGCAT
GCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGAATC
AAGGCAAGACGACTCCTTCTCTATTTTTCACGATTTTCAAAACTTTTTACGAGTCGAGATTTTTT
AAAATTGTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACAAGATCCTTGAATTTTTGGTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTG
TCCCCATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATCTGCGCACACCCCCCAACCCCCCCGATCACCGAAACCTCAATGCCGCCAGTC
AGGTTCTCCGGCGATGCTACGGCGATGGCACCCCGACAAAGAAAAATGAGGCACCAGCACATGCC
CCAGCCTAAGCCAACCGATGAAATGACA
Found at i:18377997 original size:26 final size:26
Alignment explanation
Indices: 18377968--18378020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18377958 CTGGTCCGAT
*
18377968 CTTAGACTGGGAGTAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
18377994 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18378020 C
1 C
18378021 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18378207 original size:4 final size:4
Alignment explanation
Indices: 18378200--18378232 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
18378190 GACGAAACAA
*
18378200 GCGG GCGG GCGG GCGG GCGG GCGG GCGA GCGG G
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCGG G
18378233 AAATACGCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.03, C:0.24, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:18378796 original size:11 final size:11
Alignment explanation
Indices: 18378780--18378813 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
18378770 GGTCAGGTTC
18378780 TCCGGCGATGG
1 TCCGGCGATGG
18378791 TCCGGCGATGG
1 TCCGGCGATGG
18378802 TCCGGCGATGG
1 TCCGGCGATGG
18378813 T
1 T
18378814 GCCTCGGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.09, C:0.26, G:0.44, T:0.21
Consensus pattern (11 bp):
TCCGGCGATGG
Found at i:18378931 original size:26 final size:26
Alignment explanation
Indices: 18378891--18378943 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18378881 CTGATTCGAT
18378891 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
18378917 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
18378943 C
1 C
18378944 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:18379281 original size:913 final size:898
Alignment explanation
Indices: 18377341--18384425 Score: 9053
Period size: 871 Copynumber: 7.9 Consensus size: 898
18377331 TGAAATGACA
*
18377341 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGTGT
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
**
18377406 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGAATC
66 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
*
18377471 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTT
131 ATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTT
* * * ** *
18377536 AAAATTTTTTTGGATGGA-TTTCTGGCCCCAAATTTGGTAGACAAGATCCTTGAATTTTTGTTGG
196 AAAATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
18377600 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAGAAAAGT
260 CATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * *
18377665 GTCCCCATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTATAAAATCTCAAGTGCTCTTTAA
325 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
18377730 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
390 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* ** * * *
18377795 CCATCGCACATCA-GTGCGTACACCCCCCCAACCCCTCCGATCATC-GACACCCTAATGCCGTCG
455 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGA-ACCCCAATGCCGCCG
** ** *
18377858 GTCAGGTTCTCCGGTGATGCTCCGGCGATGGCACCCCGACGAAGAAAAATGAGGCACCAGCACAT
518 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACAT
* * * * * * * *
18377923 GCTCAAGCCCAGTATGTGCTGTCACAACGCTC-AGTCTGGTCCGATCTTAGACTGGGAGTAAACT
583 GCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCTGGTTCGATCTTAGACTGGGAATGAACT
* *
18377987 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGC
647 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* *** * ** * *
18378052 GCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGTTAGGGATCGGCTGCATCCCCCTCTGCGTGCTA
712 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTG
** * *
18378117 CCGATCCTGCTGCCGCAACCCTCAATCCGGTC-AGATCTTAGACTAGGAATGAA-TTCGTATGCC
777 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTA-ATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
18378180 TAAACCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCGGGCGAGCGGGAAATACG-CAGG
841 TAAGCCAACCGACG--A-AA-----CGAGC-GGTGGGCGGGCGGGC-A-C------TACGTC-GG
*
18378244 CCAAAGAGACG
888 CCAGAGAGACG
*
18378255 GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT-
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-TG
**
18378319 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-TTTTAAGCCTTCACGTGAAGTTT
65 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* ** *
18378383 CATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTT
130 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTT
* ** *
18378448 TAAAATTTTTTCGGAAGGATTTTTGGTGCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGG
195 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
18378513 CATGCA-AAACAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
260 CATGCATAAA-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
18378577 TGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAATTGCTCTTTA
324 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
18378642 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCACGTACCAGCA
389 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
18378707 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGAAACCCCAATGCCACCGG
454 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* * ** * *
18378772 TCAGGTTCTCCGGCGATGGTCCGGCGATGGTCCGGCGATGGTGCCTCGGTGAAGAAAAAAGTGAC
519 TCAGGTTCT-C--CGA--------CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGC
*
18378837 ACCAGCACATG-CCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGATTCGATCTTAGACTGG
573 ACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTTCGATCTTAGACTGG
* *
18378901 CAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
638 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * *
18378966 CATGAGGCCACTCAGCCGGCCAGAGGGGCGGGATCCGCAAGCCGAGGATCGGCCGGGTCCTCCTC
703 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTC
* * ** *
18379031 TGCATGCTGCCGATCCTGCTACCGCAACCATCAATCCGGTCTGATCTTAGACTGGGAATGAACTC
768 TGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTC
* * *
18379096 CGTATGCCTACGCCAACCGACGAAACGAAAGGGCGTGTGGGCGGGCGAGCACTATGTCGGCCAGA
833 CGTATGCCTAAGCCAACCGACGAAACG--A--GCG-GTGGGCGGGCGGGCACTACGTCGGCCAGA
18379161 GAGACG
893 GAGACG
* *
18379167 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTATGT
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
* *
18379232 GGCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
66 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* **
18379297 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGAGATTTTTT
131 ATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTT
* *
18379362 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
196 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
18379427 ATGCATAAAAACATTCAGCTAAAAACTC-AAGGTGTACAAGATTTTGTAACCATTTGAAAAAAAA
261 ATGCATAAAAAAATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTG-AAAAAAG
* *
18379491 TGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTA
324 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
18379556 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
389 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
**
18379621 CCCATCGCACATCATGTGCGCACA-CCCCCCGGTCCCCCCGATCGTCGGAACCCCAATGCCATCG
454 CCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCG
** * * **
18379685 GTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAACGAATAAAAATACGGCACCAGCACAT
518 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACAT
* * * * *
18379750 GCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGATCCGGTTCGATCTTAGACTTGGAATGAACTC
583 GCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTC
* * * *
18379815 CGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGCCG
648 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * *
18379880 GTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCGTGCTGC
713 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGC
* * * * * *
18379945 CAATCCTGCTGCCGTAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTA
778 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
18380010 AGCCAACCGATGAAACGA---GTGGGCGGGTGGGCACTACGTCGGCCAGAGAGACG
843 AGCCAACCGACGAAACGAGCGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
* **
18380063 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCAT
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
*
18380128 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCAAC-TGAAGTTT
66 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ACGTGAAGTTT
* * ** *
18380192 CATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAAATTTTTGGGGTTTGGGA-TTTT
130 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTT
* * *
18380256 TAATAATTTTTTCGAAAGGAGTTTTGGCCTCAAACTTGGTAGACGCGATCCTTGTATTTTTGTTG
195 TAA-AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
18380321 GCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
259 GCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
18380386 TGTCCCCATTTCAGACACCTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTA
324 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
18380451 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGGCGAAGTACCAGC
389 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGGCCAAGTACCAGC
* * * * *
18380516 ACCCATTGTACATCATGGGCGCACACCCCACCCGGCCACCCCGATTGTCGGAACCCCAATGCCGT
453 ACCCATCGCACATCATGTGCGCACACCCC-CCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGC
* * * *
18380581 CGGTCAGCTTCTCCGACGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGTGACAACAGCAC
516 CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
* * * * *
18380646 ATGCTCGAGCCCAGCATCTACTGCCACAA-CC-C--TC--G---G----T---C------TG-A-
581 ATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAAC
* * *
18380687 TCCG-AT-CTTAGACTGGGAATGAACTTCGTCTG-CTAAGTCAACCCACGATACGAGCGTGCGGG
646 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
18380749 CGTTCAACCGGCCAGAGGGGCGGGGTGCACAAGCCGGGGATCGTCTGGGTCCCCC-CTGCATGCT
711 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCT
* * * * **
18380813 GCC-AACCTTGCTACCGTAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCACATGC
776 GCCGATCC-TGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18380877 GTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACG
840 CTAAGCCAACCGACGAAACGAGC-GGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
* **
18380937 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCAT
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
*
18381002 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCAAC-TGAAGTTT
66 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ACGTGAAGTTT
* * ** *
18381066 CATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAAATTTTTGGGGTTTGGGA-TTTT
130 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTT
* * * *
18381130 TAATAATTTTTTTGGAAGGAGTTTTGGCCTCAAACTTGGTAGATGCGATCCTTGTATTTTTGTTG
195 TAA-AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
18381195 GCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
259 GCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
18381260 TGTCCCCATTTCAGACACCTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTA
324 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
18381325 AGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCA
389 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
18381390 CCCATCGCACATCATTTGGGCACA-CCCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCTGCC
454 CCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCC
* * * *
18381453 GGTCAGGTTCTCC-AGCGATACTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGTAC
517 GGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
* * * * *
18381517 ATGCCCAACCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCATAGACTGGGAATGAAC
581 ATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAAC
* * *
18381582 TCCGTATGCTTAGACTGGGAATGAACTTCGTATCCCTAAGTCAA-CCATGAAACGAGCGTGCGGG
646 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * * *
18381646 TGCTCAGCCAGCCTGTGGGGTGGGATGCGCAAGACGGGGATCGGCCCGGTCCCCCTCTGCATGTT
711 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCT
* * ** * *
18381711 GTCGATCCTGCTGCTGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCC
776 GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
18381776 TAAGCCAACCGACGAAACGAGC---GGGTGGGCGGGCACTACGTCGACCAGAGAGATG
841 TAAGCCAACCGACGAAACGAGCGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
* * *
18381831 GGTTGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGT
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
* * * * *
18381896 GCCAGTGCCATTTGTATGGCTTGTATATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTC
66 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* ** * *
18381961 ATGGCAAGACTACTTGTTTTCTTTTTTTCATGATTTTTGAAACTTTTTATGGTTTGAGATTTTTT
131 ATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTT
** * * *
18382026 AAAATTTTTTCGGAAGGAGTTTTCACCCAAAACTTGGTAGATGTGATCCTTGTATTTTTTTTTGG
196 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGG
*
18382091 CATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
260 CATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
18382156 GTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
325 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
18382221 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAACAC
390 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
18382286 CCATAGCACATCATGTGCGCACATCCCCCCGGCCCCTCCGATCG-CAGGAACCCCAATGCCGCCG
455 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGTC-GGAACCCCAATGCCGCCG
** ***
18382350 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATACAGCACCAGCACAT
518 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACAT
* *
18382415 GCCCGAA-CCCAGTATGTGCTGCCGCAA---TC---C----TCG---TT---C-CGG--T---CT
583 GCCC-AAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACT
* * *
18382457 --G-AT-CTTAGACTGGGCATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGT
647 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * *
18382518 ACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCCGGGATCGACCCGATCCTCCACTATG--TGC
712 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC-CC-CTCTGCATGC
*
18382581 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTGC-AATCTTAGACTGGGAACGAACTCCGTATG
775 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGT-CTAATCTTAGACTGGGAATGAACTCCGTATG
*
18382645 CCTAAGCCAACCGATGAAACGAGC---GGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
839 CCTAAGCCAACCGACGAAACGAGCGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
* * * **
18382702 GGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTTTGCAT
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
* * * *
18382767 GCGAATGGCATATTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTC
66 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
18382832 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTT
131 ATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTT
* * * *
18382897 TAAATTTTTTAGAAAGGAGTTCTGGCCCCAAACTTGGTAGACGTGA-CCTTGTATTTTTGTTGGC
196 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
18382961 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATCTGAAAAAAGTT
261 ATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
18383026 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTGTTTAAG
326 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
18383091 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCGAGTACCAGCACC
391 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
18383156 CATTGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTTGGAACACCAATGCCGTCGGT
456 CATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGT
* * * * ** *
18383220 CAGGTTCTCCGACAATGCTCTGGCGATGGTACCTCGGTGAAGAAAAATGCGGCACCAGCACATGC
520 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
* * * *
18383285 CCGAGCCCAGCATCTGCT-ACGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGGACTCCG
585 CCAAGCCCAGCATGTGCTGCCGCAA----C---CC--TC-GA---T---CT-GG--T----T-CG
*
18383349 TATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
626 -AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
18383414 ACCCAAGAAACGAGCGTGCGGGCGCTCAGTCGACTAGAGCGGCAGGATGCACAAGCCGGGGATCG
689 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* ** ** *
18383479 GCTGGGTCCCCCTCTGCA---T---G---CTG-T--CGCAACCCTCGGTCCCATCCGATTTATAG
754 GCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCT-TAG
* * * *
18383532 ACTAGGAATGAACTTCGTATGTCTAAGCCAACCGACGAAACGAGC---AGGCGGGCGGGCACTAC
818 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGTGGGCGGGCGGGCACTAC
*
18383594 GTCGGCCAGAGAGATG
883 GTCGGCCAGAGAGACG
* **
18383610 GGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
1 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
* *
18383675 GCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTC
66 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * *
18383740 ATGGCAAGGCGACTCATTTTCTATTTTCCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT
131 ATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTT
* * ** *
18383805 TAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGAAATGATTCTTGTATTTTTGTTGGC
196 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
18383870 ATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTTA-AAGATTTTGTGACCATTTGAAAAAAGT
261 ATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG-TACAAGATTTTGTGACCATTTGAAAAAAGT
*
18383934 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA
325 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
18383999 AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTAC
390 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
18384064 CCATCGCACATCATGTGCGCACACCCCTCCGACCCCCCCGATCATCGGAACCCCAATGTCGCCGG
455 CCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* * *
18384129 TCAGGTTCTCCGACGATGCTCCGACGATGGTTCCCCGGCGAAGAAAAATGTGGCACCAGCACATG
519 TCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATG
* * * *
18384194 CCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC-GGGTCTGATCTTAGACTGGGAATGAACTC
584 CCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTTC-GATCTTAGACTGGGAATGAACTC
** * * * * *
18384258 TATATGCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCAACGAAATGAGCGTGCGGGTG
648 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
18384323 CTCAGCCGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTAC
713 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGC
* * *
18384388 CGATCCTGCTGCCACAACCCTCGGTCCGATCTGATCTT
778 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTT
18384426 CATATTTCCG
Statistics
Matches: 5441, Mismatches: 566, Indels: 346
0.86 0.09 0.05
Matches are distributed among these distances:
867 5 0.00
868 105 0.02
869 222 0.04
870 121 0.02
871 560 0.10
872 33 0.01
873 40 0.01
874 468 0.09
875 3 0.00
876 2 0.00
877 2 0.00
879 4 0.00
880 2 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 127 0.02
886 5 0.00
887 3 0.00
888 1 0.00
889 2 0.00
890 1 0.00
891 1 0.00
892 1 0.00
893 7 0.00
894 246 0.05
895 353 0.06
896 461 0.08
897 119 0.02
898 197 0.04
899 3 0.00
900 1 0.00
901 3 0.00
902 3 0.00
903 41 0.01
904 244 0.04
906 3 0.00
907 20 0.00
908 292 0.05
909 221 0.04
910 116 0.02
911 7 0.00
912 119 0.02
913 553 0.10
914 319 0.06
915 3 0.00
916 5 0.00
917 5 0.00
918 5 0.00
919 94 0.02
920 14 0.00
921 2 0.00
922 1 0.00
923 209 0.04
924 64 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
ATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTT
AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCC
CAAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGA
TCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAGCGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
Found at i:18379824 original size:26 final size:26
Alignment explanation
Indices: 18379795--18379847 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18379785 CCGGTTCGAT
*
18379795 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18379821 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18379847 C
1 C
18379848 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18383357 original size:26 final size:26
Alignment explanation
Indices: 18383327--18383405 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
18383317 CCGGTCTGAT
* *
18383327 CTTAGACTAGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18383353 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18383379 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18383405 C
1 C
18383406 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18384289 original size:26 final size:26
Alignment explanation
Indices: 18384238--18384289 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18384228 CGGGTCTGAT
*
18384238 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18384264 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18384290 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18385027 original size:26 final size:26
Alignment explanation
Indices: 18384998--18385050 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18384988 CCGGTCCAAT
18384998 CTTAGACT-GGCAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
18385024 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18385050 C
1 C
18385051 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18385940 original size:26 final size:26
Alignment explanation
Indices: 18385901--18385953 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18385891 CTGATCCGAT
* * *
18385901 CTTAGACTGTGAATGAACTTTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
18385927 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
18385953 C
1 C
18385954 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:18386840 original size:26 final size:26
Alignment explanation
Indices: 18386800--18386852 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18386790 TCGGTCCAAT
18386800 CTTAGACTAGCAATGAAATCCGTATG
1 CTTAGACTAGCAATGAAATCCGTATG
* * *
18386826 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGCAATGAAATCCGTATG
18386852 C
1 C
18386853 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGCAATGAAATCCGTATG
Found at i:18387209 original size:899 final size:897
Alignment explanation
Indices: 18384421--18390022 Score: 7692
Period size: 903 Copynumber: 6.3 Consensus size: 897
18384411 GTCCGATCTG
* *
18384421 ATCTTCATATTTCCGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
18384486 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * *
18384551 TTCAGTTTGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
131 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
18384615 CATTGTATTTTTGTTGGCATGTAGAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
18384680 GACCATTTGAAAAAAGTGTCCCTATTACAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
18384745 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
18384810 GGGCCAAGTGCCAGCACCCATTGCACATCATGTGCACACACCCCCCGCCCCCCCGATCGTCGAAA
391 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCCGATCGTCGAAA
*
18384875 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGAAAAGAAAAATG
456 CCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGG--AA-AAAAATG
* * ** * *
18384940 GGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCGTAACCCTTGGTCCGGTCCAATCTTAGAC
518 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGGCACAACCCTCGATCCGGTCCAATCTTAGAC
* * *
18385005 TGGCAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAAC
583 TAGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * **
18385070 GAGCGTGCAGGCGCTC-GGCTGGCCAGAAGGGCGGGATGCGTAAGCCAGGGATTGGCCGGGTCCC
648 GAGCGTGCAGGCGCTCAGTC-GGCCAGAAGGGCAGGATGCGTAAGCCAGGGATCGATCGGGTCCC
* * * *
18385134 CCTCTGTGTGCTGCCGATCTTGCTA-TCGTAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATG
712 CCTCTGTGTGCTGCCGATCCTGCTACT-GTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * * *
18385198 AACTCCGTACGCCTAAGCCAACCGATAAAACGAGCGAGTGGGCGGGCCGGAGGGCACTACGCCGA
776 AACTCCGTACGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGGGCAGG-GGGCACTACGTCGA
*
18385263 CCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
840 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
18385321 ATCTACATATTTCT-TCATGCCAATTCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
1 ATCTTCATATTTCTGT-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
18385385 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
65 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
** * *
18385450 TTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG-GTTTTAGCCCCAAACTTGGTAGACGTGA
130 TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * ***
18385514 TCCTTGTACTTTCGTTGGCATGCATAAAAAAATTCAGCTAAAAACAAAAAGTGTACAAGATTTTG
195 TCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
18385579 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAA
260 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
18385644 ATCTGAAATGCTCTTAAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
325 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
18385709 AGGTCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCACCCCGATTGTCG
390 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCC-GCCCCCCCGATCGTCG
* *** * * * *
18385774 GAACTTGAATGCCGCCGGTCAGGTTCTCCGGTGATGCTTCAACGATGGTGCCCCGACGAAGAAAA
453 AAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCG--GAA-AAAA
* * * * * * *
18385839 ATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTTGGTCTGATCCGATCTT
515 ATG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGGCACAACCCTCGATCCGGTCCAATCTT
* ** * *
18385904 AGACT-GTGAATGAACTTTGTATGCTTACACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
579 AGACTAG-CAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
18385968 GAAACGAGCGTGCTGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGG
643 GAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAAGGGCAGGATGCGTAAGCCAGGGATCGATCGGG
** * * * * * * * **
18386033 TCCCCCTCTGCATGCTGTCAATCTTGCTACTGCAACCCTCAGTTCGGCCCAATCTTAGACTGGGA
708 TCCCCCTCTGTGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
* * ** *
18386098 ATGAACTCCGTATGCCTATGCCAACCGATGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACG-
773 ATGAACTCCGTACGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGGGCAGG-GGGCACTACGT
* *
18386162 CTGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
837 C-GACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
18386224 ATCTTCATATTTCTGTGTGCCAATGCGATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
**
18386289 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * *
18386354 TACGGTTCGGGATTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCCGCAAACTTGGTAGACATGAT
131 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * * *
18386418 CCATGTATTTTTATTGGCATGCAAAAAAAAATTTAGCTAAAAACTCGAAGTGTACGAGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
18386483 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
18386548 TCTCACATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGGGGGATAGGGGGCCAATATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
18386613 GGCCCAAGTGCCAGTACCCATCGCACATCATGTGCACATACCCCCCGCCCCCCCGATCGCCGAAA
391 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCCGATCGTCGAAA
* * * *
18386678 CCCCAATGCCGCCAGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGGCAAAAAAAAATG
456 CCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGG---AAAAAAATG
* *
18386743 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGAT-CGGTCCAATCTTAGAC
518 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGGCACAACCCTCGATCCGGTCCAATCTTAGAC
*
18386807 TAGCAATGAAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
583 TAGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * *
18386872 GAGCGTGCAGGCGCTCAGTCGGCCAGAAGGGCGGGATACGCAAGCCAGGGATTGGTCGGGTCCCC
648 GAGCGTGCAGGCGCTCAGTCGGCCAGAAGGGCAGGATGCGTAAGCCAGGGATCGATCGGGTCCCC
* * * *
18386937 CTCTGTGTGCTGTCGATCTTGCTACCGTAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAA
713 CTCTGTGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
*
18387002 CTCCGTACGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGGGCAGGTGGGCACTACGTCAACC
778 CTCCGTACGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGGGCAGG-GGGCACTACGTCGACC
18387067 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
842 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
18387123 ATCTTCATATTTCTGTGTGCCAATTCCTTTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
18387188 GCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
** ** * **
18387253 TGTGGTTCAAGATTTTTTAAAATTTTTTCGAAAGG-GTTTTCACCCCAAACTTGGTAGACGTGAT
131 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
18387317 CCTTGTACTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGT
196 CCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
18387382 GACCATTTCAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTGGCAGCAAACCTGTAACA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
18387447 TCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* ** *
18387512 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCGATCGTCGGAA
391 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCCGATCGTCGAAA
18387577 CCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGG-------T--G-
456 CCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGAAAAAAATGGGC
** *
18387632 A--AG-A-A------A----A--A--TGC-GGCACAACCCTCGATCCGGTCTGATCTTAGGCTAT
521 ACCAGCACATGCCCGAGCCCAGCATGTGCTGGCACAACCCTCGATCCGGTCCAATCTTAGACTA-
* *
18387678 G-AATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA
585 GCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
** * * * * *
18387742 GCGTGTGGGCACTCAGTTGGCCA-AAGGGGCAGGATGCGTAAGCCGGGGATCGATCGGCTCACCC
650 GCGTGCAGGCGCTCAGTCGGCCAGAA-GGGCAGGATGCGTAAGCCAGGGATCGATCGGGTCCCCC
* * * *
18387806 TCTGTGTGCTGCCGATCCTACTGCTGTAACCTTCGGTTCGGTCTGATCTTAGACTGGGAATGAAC
714 TCTGTGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * *
18387871 TCCGTATGCCTAAGCCAACCGACGAAATGA----GTGGACAGGCA---GGCACTA-TTCCGCCCA
779 TCCGTACGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGGGCAGGGGGCACTACGT-CGACCA
* *
18387928 GAGAGACGGGATGCGCAAGCCGTGGTTCGATAGGGTGGCAGGTGGGTTTAGGCAC
843 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
18387983 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATACATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
18388048 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-TCGATTTTTGAAACTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT-GATTTTTGAAACTTT
* * * *
18388112 TTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGCCCCAAACTTGGTAGATGTGA
130 TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
18388177 TCCTTGTATGTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
195 TCCTTGTAT-TTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
18388241 GTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
259 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
18388306 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATAT
324 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * **
18388371 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTTCACACACCCCCCGGTCCCCCCGATCACCG
389 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCC-GCCCCCCCGATCGTCG
* *** **
18388436 AAACCCCAATGCCGTCGATCAGGTTCTCCGGCAATGCTCCGGTGATGGTGCCCCGACGAAGAAAA
453 AAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCG--GAA-AAAA
* * * *
18388501 ATGCGGCACCAGCACATGCCCGAACCCAGCATGTGCTGGCGCAACCCTCGGTCCAGTCCAATCTT
515 ATG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGGCACAACCCTCGATCCGGTCCAATCTT
* * * * *
18388566 AGATTGGCAATGAACTCCGTATGCTTAGACTGGGATTGAACTCCGTAGGCCTAAGTCAACCCATG
579 AGACTAGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
18388631 AAATGAGCGTGCCGGCGCTCAGTCGGCCAGAAGGGCAGGATGCATAAGCCAAGGATCGATCGGGT
644 AAACGAGCGTGCAGGCGCTCAGTCGGCCAGAAGGGCAGGATGCGTAAGCCAGGGATCGATCGGGT
* * * * * *
18388696 GCCCCTCTGGGTGCTGTCGATCCTGCTACAGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAA
709 CCCCCTCTGTGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
18388761 TGAACTCCGTACGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGGGCAGGTGGGCACTACGTC
774 TGAACTCCGTACGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGGGCAGG-GGGCACTACGTC
* * *
18388826 AACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCCC
838 GACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
18388886 ATCTTCATATTTCTGTGTGCCAATTCCTTTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
18388951 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * * * * * **
18389016 TGCGGTTCGAGA-TTTTTAAAATTTTTTTGGAAGCA-TTTTAGCCCGAAACTTGGTAGATATGAT
131 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
18389079 CCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACAT-GAAGTGTACAAGATTTTG
196 CCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTG
18389143 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
260 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
18389208 A-CTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATA
325 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * ** *
18389272 AGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGGCCCCCGATCGTCGG
390 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCGCCCCCCCGATCGTCGA
18389337 AACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGG-------T--
454 AACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGAAAAAAATGG
** *
18389393 G-A--AG-A-A------A----A--A--TGC-GGCACAACCCTCGATCCGGTCTGATCTTAGGCT
519 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGGCACAACCCTCGATCCGGTCCAATCTTAGACT
*
18389438 ATG-AATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
584 A-GCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
** * * * *
18389502 GAGCGTGTGGGCACTCAG-CTGGCCA-AAGGGGCAGGATGCGTAAGCCGGGGATCGATCGGCTCG
648 GAGCGTGCAGGCGCTCAGTC-GGCCAGAA-GGGCAGGATGCGTAAGCCAGGGATCGATCGGGTCC
* * *
18389565 CCCTCTGTGTGCTGCCGATCCTGCTGCTGTAACCTTCGGTTCGGTCTGATCTTAGACTGGGAATG
711 CCCTCTGTGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * * *
18389630 AACTCCGTATGCCTAAGCCAACCGACGAAATGA----GTGGGCGGGCA---GGCACTAC-TCCGG
776 AACTCCGTACGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGGGCAGGGGGCACTACGT-CGA
* * * *
18389687 CCAGAGAGACGGGATGCGTAAGCCGTGGATTGATAGGGTGGTTGGTGGGTTTAGGGAC
840 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
18389745 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
18389810 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * *
18389875 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACTCCAAAGTTGGTAGACGTGAT
131 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
18389940 CCTTGTGTTTTTGTTGGTTTATGC--AAAAAAA-TCAGCTAAAAACTCGAACTGTACAAGATTTT
196 CCTTGTATTTTTGTTGG--CATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
18390002 GTGACCATTTGAAAAAAGTGT
259 GTGACCATTTGAAAAAAGTGT
18390023 GTCATAACGT
Statistics
Matches: 4186, Mismatches: 432, Indels: 208
0.87 0.09 0.04
Matches are distributed among these distances:
858 1 0.00
859 199 0.05
860 285 0.07
861 295 0.07
862 64 0.02
863 15 0.00
864 10 0.00
866 3 0.00
867 233 0.06
868 215 0.05
869 1 0.00
870 2 0.00
872 3 0.00
875 1 0.00
876 3 0.00
878 2 0.00
879 1 0.00
880 1 0.00
882 2 0.00
883 2 0.00
884 4 0.00
886 3 0.00
887 2 0.00
889 1 0.00
890 2 0.00
892 1 0.00
894 4 0.00
895 217 0.05
896 2 0.00
898 1 0.00
899 754 0.18
900 607 0.15
901 228 0.05
902 112 0.03
903 903 0.22
904 7 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (897 bp):
ATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCCGATCGTCGAAA
CCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGAAAAAAATGGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGGCACAACCCTCGATCCGGTCCAATCTTAGACTAG
CAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCAGGCGCTCAGTCGGCCAGAAGGGCAGGATGCGTAAGCCAGGGATCGATCGGGTCCCCCTC
TGTGTGCTGCCGATCCTGCTACTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
CGTACGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGGGCAGGGGGCACTACGTCGACCAGAG
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
Found at i:18389459 original size:26 final size:26
Alignment explanation
Indices: 18389430--18389482 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18389420 CCGGTCTGAT
* *
18389430 CTTAGGCTATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18389456 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18389482 C
1 C
18389483 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18390627 original size:60 final size:59
Alignment explanation
Indices: 18390499--18390797 Score: 442
Period size: 59 Copynumber: 5.0 Consensus size: 59
18390489 GTTCTTGTGT
* *
18390499 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAATTTTGATTTTCA
1 AGGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTTTA
*
18390558 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCATTTTTTTTGAAAATTT-ATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCC-CAAAAA-TATTTTTTTTGAAAATTTGATTTTTA
* *
18390618 AGGAAAATTGATATTTTCAACTTTTCCCTAAAAGTATTTTTTTTGAAAATTT-ATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTTGAAAATTTGATTTTTA
* *
18390677 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTTCA
1 AGGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTTGAAAATTTGATTTTT-A
*
18390738 AGGAAAATTGATACTTTCAACTTTTCCCTAAAATATTTTTTTTGGAAAATTTGATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTT-GAAAATTTGATTTTTA
18390798 TTTAAAGAAA
Statistics
Matches: 221, Mismatches: 13, Indels: 11
0.90 0.05 0.04
Matches are distributed among these distances:
59 107 0.48
60 57 0.26
61 57 0.26
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (59 bp):
AGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTTTA
Found at i:18390659 original size:119 final size:120
Alignment explanation
Indices: 18390499--18390795 Score: 451
Period size: 119 Copynumber: 2.5 Consensus size: 120
18390489 GTTCTTGTGT
* *
18390499 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAATTTTGATTTTCAAGGAA
1 AGGAAAATTGATACTTTCAACTTTTCC-CTAAAATATTTTTTTTGAAAATTTGATTTTCAAGGAA
*
18390563 AATTGATACTTTCAACTTTT-CCTCAAAAACCATTTTTTTTGAAAATTT-ATTTTT-A
65 AATTGATACTTTCAACTTTTCCCT-AAAAA-CATTTTTTTGGAAAATTTGATTTTTCA
* *
18390618 AGGAAAATTGATATTTTCAACTTTTCCCTAAAAGTATTTTTTTTGAAAATTT-ATTTTTAAGGAA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAA-TATTTTTTTTGAAAATTTGATTTTCAAGGAA
* *
18390682 AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTTCA
65 AATTGATACTTTCAACTTTTCCCTAAAAACATTTTTTTGGAAAATTTGATTTTTCA
18390738 AGGAAAATTGATACTTTCAACTTTTCCCTAAAATATTTTTTTTGGAAAATTTGATTTT
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAATATTTTTTTT-GAAAATTTGATTTT
18390796 TATTTAAAGA
Statistics
Matches: 163, Mismatches: 8, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
118 20 0.12
119 80 0.49
120 58 0.36
121 5 0.03
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (120 bp):
AGGAAAATTGATACTTTCAACTTTTCCCTAAAATATTTTTTTTGAAAATTTGATTTTCAAGGAAA
ATTGATACTTTCAACTTTTCCCTAAAAACATTTTTTTGGAAAATTTGATTTTTCA
Found at i:18390846 original size:17 final size:16
Alignment explanation
Indices: 18390826--18390939 Score: 58
Period size: 17 Copynumber: 7.1 Consensus size: 16
18390816 AATAAAAGTG
18390826 AAAATAAATAAAGATAA
1 AAAATAAATAAA-ATAA
*
18390843 AAAATAAAGAAAAGTAA
1 AAAATAAATAAAA-TAA
*
18390860 AACAA-AAATAAAA-AT
1 AA-AATAAATAAAATAA
* *
18390875 AAGATAAA-AAAATAT
1 AAAATAAATAAAATAA
* ** *
18390890 TAAATAAATCTAATCTA
1 AAAATAAATAAAAT-AA
*
18390907 ATAATAAAT-AAATAA
1 AAAATAAATAAAATAA
18390922 ATAAATAAA-ACAAATAA
1 A-AAATAAATA-AAATAA
18390939 A
1 A
18390940 TAAAAAATTT
Statistics
Matches: 73, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
14 5 0.07
15 16 0.22
16 13 0.18
17 37 0.51
18 2 0.03
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (16 bp):
AAAATAAATAAAATAA
Found at i:18390861 original size:39 final size:39
Alignment explanation
Indices: 18390800--18390885 Score: 95
Period size: 39 Copynumber: 2.2 Consensus size: 39
18390790 GATTTTTATT
* ** *
18390800 TAAAGAAATAGAATAAAATAAAAGTGAAAATAAATA-AAGA
1 TAAA-AAATAGAAGAAAATAAAA-CAAAAATAAAAATAAGA
18390840 TAAAAAATA-AAGAAAAGTAAAACAAAAATAAAAATAAGA
1 TAAAAAATAGAAGAAAA-TAAAACAAAAATAAAAATAAGA
18390879 TAAAAAA
1 TAAAAAA
18390886 ATATTAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
38 15 0.38
39 21 0.52
40 4 0.10
ACGTcount: A:0.74, C:0.01, G:0.09, T:0.15
Consensus pattern (39 bp):
TAAAAAATAGAAGAAAATAAAACAAAAATAAAAATAAGA
Found at i:18390916 original size:4 final size:4
Alignment explanation
Indices: 18390909--18390947 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
18390899 CTAATCTAAT
*
18390909 AATA AATA AATA AATA AATAA AACA AATA AATA AA-A AAT
1 AATA AATA AATA AATA AAT-A AATA AATA AATA AATA AAT
18390948 TTTGAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 3 0.10
4 25 0.81
5 3 0.10
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:18390936 original size:21 final size:21
Alignment explanation
Indices: 18390827--18390944 Score: 50
Period size: 21 Copynumber: 5.6 Consensus size: 21
18390817 ATAAAAGTGA
*
18390827 AAATAAATAAAGATAAA-AAAT
1 AAATAAATAAA-ACAAATAAAT
* *
18390848 AAAGAAAAGTAAAACAAA-AATAA
1 AAA-TAAA-TAAAACAAATAA-AT
*
18390871 AAATAAGATAAAA-AAAT-ATT
1 AAATAA-ATAAAACAAATAAAT
* * *
18390891 AAATAAATCTAATCTAAT-AAT
1 AAATAAAT-AAAACAAATAAAT
* *
18390912 AAATAAAT-AAATAAATAAAAC
1 AAATAAATAAAACAAAT-AAAT
18390933 AAATAAATAAAA
1 AAATAAATAAAA
18390945 AATTTTGAAA
Statistics
Matches: 73, Mismatches: 14, Indels: 19
0.69 0.13 0.18
Matches are distributed among these distances:
19 7 0.10
20 8 0.11
21 30 0.41
22 19 0.26
23 9 0.12
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (21 bp):
AAATAAATAAAACAAATAAAT
Found at i:18390938 original size:13 final size:13
Alignment explanation
Indices: 18390909--18390944 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
18390899 CTAATCTAAT
*
18390909 AATAAAT-AAATA
1 AATAAATAAAACA
18390921 AATAAATAAAACA
1 AATAAATAAAACA
18390934 AATAAATAAAA
1 AATAAATAAAA
18390945 AATTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (13 bp):
AATAAATAAAACA
Found at i:18391811 original size:18 final size:18
Alignment explanation
Indices: 18391788--18391835 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
18391778 AAAAAGAAAA
*
18391788 AAATAATAATAATCAGAT
1 AAATAATAAAAATCAGAT
*
18391806 AAATAAAAAAAATCAGAT
1 AAATAATAAAAATCAGAT
18391824 AAATGAATAAAA
1 AAAT-AATAAAA
18391836 TAAAATTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (18 bp):
AAATAATAAAAATCAGAT
Found at i:18391921 original size:4 final size:4
Alignment explanation
Indices: 18391895--18392006 Score: 53
Period size: 4 Copynumber: 28.8 Consensus size: 4
18391885 TACCAGAAAA
* * *
18391895 AAAT AAATT ATAAT ATAAT -AAT AAAT ATAT AACT ATAT AAAT AAAT AAGAT
1 AAAT AAA-T A-AAT A-AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT
* * *
18391946 --AT AAAT ATTAAC AAA- AAAT AAAT AAAT AAAT ATAT ACAT -AAT -AAT
1 AAAT AAAT A--AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
18391991 -AAT -AAT AAAT -AAT AAA
1 AAAT AAAT AAAT AAAT AAA
18392007 ATACATAAAA
Statistics
Matches: 87, Mismatches: 10, Indels: 22
0.73 0.08 0.18
Matches are distributed among these distances:
2 2 0.02
3 20 0.23
4 50 0.57
5 10 0.11
6 5 0.06
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (4 bp):
AAAT
Found at i:18392033 original size:17 final size:17
Alignment explanation
Indices: 18392013--18392055 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
18392003 TAAAATACAT
**
18392013 AAAATACAAAAGAAGGA
1 AAAATACAAAAGAAAAA
* *
18392030 AAAAGAAAAAAGAAAAA
1 AAAATACAAAAGAAAAA
18392047 AAAATACAA
1 AAAATACAA
18392056 GGTAAAAAAT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.79, C:0.05, G:0.12, T:0.05
Consensus pattern (17 bp):
AAAATACAAAAGAAAAA
Found at i:18392242 original size:11 final size:10
Alignment explanation
Indices: 18392219--18392291 Score: 80
Period size: 10 Copynumber: 7.4 Consensus size: 10
18392209 ACATTGTCAT
18392219 TTTTTGTTTTG
1 TTTTT-TTTTG
18392230 -TTTTTTTTG
1 TTTTTTTTTG
*
18392239 TGTTTTTTTG
1 TTTTTTTTTG
*
18392249 TTGTTTTGTTG
1 TT-TTTTTTTG
18392260 -TTTTTTTTG
1 TTTTTTTTTG
*
18392269 TTTTTTTGT-
1 TTTTTTTTTG
18392278 TTTTTTTTTG
1 TTTTTTTTTG
18392288 TTTT
1 TTTT
18392292 GACCAAAGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
9 20 0.38
10 25 0.48
11 7 0.13
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:18392244 original size:8 final size:7
Alignment explanation
Indices: 18392218--18392291 Score: 57
Period size: 7 Copynumber: 10.6 Consensus size: 7
18392208 AACATTGTCA
18392218 TTTTTTG
1 TTTTTTG
18392225 TTTTGTT-
1 TTTT-TTG
18392232 TTTTTTG
1 TTTTTTG
*
18392239 TGTTTT-
1 TTTTTTG
*
18392245 TTTGTTG
1 TTTTTTG
18392252 TTTTGTTG
1 TTTT-TTG
18392260 TTTTTT-
1 TTTTTTG
18392266 TTGTTTT-
1 TT-TTTTG
*
18392273 TTTGTTTT
1 TTT-TTTG
18392281 TTTTTTG
1 TTTTTTG
18392288 TTTT
1 TTTT
18392292 GACCAAAGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
6 9 0.16
7 34 0.62
8 12 0.22
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (7 bp):
TTTTTTG
Found at i:18392249 original size:19 final size:18
Alignment explanation
Indices: 18392220--18392291 Score: 90
Period size: 19 Copynumber: 3.7 Consensus size: 18
18392210 CATTGTCATT
18392220 TTTTGTTTTGTTTTTTTTG
1 TTTT-TTTTGTTTTTTTTG
18392239 TGTTTTTTTGTTGTTTTGTTG
1 T-TTTTTTTGTT-TTTT-TTG
*
18392260 TTTTTTTTGTTTTTTTGTT
1 TTTTTTTTGTTTTTTT-TG
18392279 TTTTTTTTGTTTT
1 TTTTTTTTGTTTT
18392292 GACCAAAGCT
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
18 1 0.02
19 26 0.54
20 17 0.35
21 4 0.08
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (18 bp):
TTTTTTTTGTTTTTTTTG
Found at i:18392530 original size:42 final size:41
Alignment explanation
Indices: 18392299--18392640 Score: 490
Period size: 42 Copynumber: 8.1 Consensus size: 41
18392289 TTTGACCAAA
* * *
18392299 GCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* *
18392340 GCTCCTCTAAACAGAGGCGCCACGACTTTTGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
18392381 ACTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
18392422 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
*
18392464 GCTCCTCCTCTAAACAGAGGCACCATGACTTTGAGAAAGTAAATT
1 G---CTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATT
*
18392509 GCTTCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATT
*
18392551 GCTCCTCTAAATAGAGGCA--ACGAAACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG--ACTTTGG-AAAGTAAATT
*
18392593 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATT
18392635 GCTCCT
1 GCTCCT
18392641 TGACAATCAT
Statistics
Matches: 275, Mismatches: 15, Indels: 21
0.88 0.05 0.07
Matches are distributed among these distances:
40 3 0.01
41 106 0.39
42 123 0.45
44 3 0.01
45 39 0.14
46 1 0.00
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:18393902 original size:18 final size:17
Alignment explanation
Indices: 18393855--18393921 Score: 61
Period size: 16 Copynumber: 4.0 Consensus size: 17
18393845 AATTTGAATC
18393855 TTTTTTT-TCAT-TTTT
1 TTTTTTTCTCATCTTTT
* *
18393870 TCTTCTTTCT-TTCTTTT
1 T-TTTTTTCTCATCTTTT
18393887 TTTTTTTCATCATCTTCTT
1 TTTTTTTC-TCATCTT-TT
18393906 TTTTTTTCTCAT-TTTT
1 TTTTTTTCTCATCTTTT
18393922 CATCTATTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
15 1 0.02
16 14 0.33
17 9 0.21
18 8 0.19
19 10 0.24
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTTTCTCATCTTTT
Found at i:18393924 original size:25 final size:24
Alignment explanation
Indices: 18393855--18393926 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 24
18393845 AATTTGAATC
*
18393855 TTTTTTTTCATTTTTTCTTCTTTCTT
1 TTTTTTTTCA-TTTTTCATC-TTCTT
18393881 TCTTTTTTT--TTTTCATCATCTTCTT
1 T-TTTTTTTCATTTT--TCATCTTCTT
18393906 TTTTTTTCTCATTTTTCATCT
1 TTTTTTT-TCATTTTTCATCT
18393927 ATTGTTGATA
Statistics
Matches: 39, Mismatches: 1, Indels: 13
0.74 0.02 0.25
Matches are distributed among these distances:
24 10 0.26
25 13 0.33
26 5 0.13
27 11 0.28
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTTTTTCATTTTTCATCTTCTT
Found at i:18397949 original size:59 final size:60
Alignment explanation
Indices: 18397817--18398297 Score: 574
Period size: 60 Copynumber: 8.0 Consensus size: 60
18397807 TCTTGTGTAG
* * *
18397817 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA--TTTTTTTTTTGGAAA-TTTTATTTTTAA
*** *
18397880 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTT-GAAATTTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGGAAATTTTATTTTTAA
* * *
18397939 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA----TTTTTTTTTTGGAAA-TTTTATTTTTAA
*
18398004 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAA-TATTTTTTTGGAAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATTTTTTTTTTGGAAATTTTATTTTTAA
18398062 GG-AAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTTGGAAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAAT-TTTTTTTTTGGAAATTTTATTTTTAA
* * *
18398121 GGAAAATTGATACTTTCAACTTTTCCTCAAAAGTATTTTTTTT-GAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGGAAATTTT-ATTTTTAA
* ***
18398181 GGAAAATTGATACTTTCATCTTTTCCTCAAAAA--CCCTTTTT-GAAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGGAAATTTTATTTTTAA
18398237 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAAT-TTTTTTTTTGGAAATTTT-ATTTTTA
18398298 TTTAAAGAAA
Statistics
Matches: 367, Mismatches: 31, Indels: 41
0.84 0.07 0.09
Matches are distributed among these distances:
55 1 0.00
56 37 0.10
57 33 0.09
58 24 0.07
59 83 0.23
60 87 0.24
61 11 0.03
62 7 0.02
63 39 0.11
64 5 0.01
65 40 0.11
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.47
Consensus pattern (60 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGGAAATTTTATTTTTAA
Found at i:18398136 original size:60 final size:62
Alignment explanation
Indices: 18397817--18398297 Score: 597
Period size: 59 Copynumber: 8.0 Consensus size: 62
18397807 TCTTGTGTAG
* * * *
18397817 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAT-ATTTTTTTTTGGAAATTTTGATTTTTAA
*** *
18397880 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAA-CCCTTTTTTT-GAAATTTT-ATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTTTGGAAATTTTGATTTTTAA
* * * *
18397939 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAA---TATTTTTTTTTGGAAATTTTGATTTTTAA
18398004 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTTGGAAA-TTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTTTAA
18398062 GG-AAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAA-TTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTTTAA
* *
18398121 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAGTA-TTTTTTTT-GAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTTTGGAAATTTTGATTTTTAA
* * ***
18398181 GGAAAATTGATACTTTCATCTTTT-CCTCAAAA-A-CCCTTTTT-GAAA-TTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTTTAA
18398237 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTTTA
18398298 TTTAAAGAAA
Statistics
Matches: 367, Mismatches: 31, Indels: 41
0.84 0.07 0.09
Matches are distributed among these distances:
56 30 0.08
57 42 0.11
58 24 0.07
59 85 0.23
60 85 0.23
61 10 0.03
62 10 0.03
63 36 0.10
64 7 0.02
65 38 0.10
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.47
Consensus pattern (62 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTTTAA
Found at i:18398313 original size:7 final size:6
Alignment explanation
Indices: 18398305--18398385 Score: 62
Period size: 6 Copynumber: 13.7 Consensus size: 6
18398295 TTATTTAAAG
* * *
18398305 AAAATA GAATAATA AAAA-A ATAAATA AAAATA AAAA-A TAAAGA AAAGT-
1 AAAATA -AA-AATA AAAATA A-AAATA AAAATA AAAATA AAAATA AAAATA
* *
18398353 AAAACA AAAATA AAAAT- AAAATA AAGATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
18398386 GAATATTAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
5 14 0.24
6 35 0.59
7 6 0.10
8 4 0.07
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:18398339 original size:17 final size:17
Alignment explanation
Indices: 18398319--18398373 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
18398309 TAGAATAATA
18398319 AAAAAATAAATAAAAAT
1 AAAAAATAAATAAAAAT
* *
18398336 AAAAAATAAAGAAAAGT
1 AAAAAATAAATAAAAAT
18398353 AAAACAA-AAATAAAAAT
1 AAAA-AATAAATAAAAAT
18398370 AAAA
1 AAAA
18398374 TAAAGATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 31 0.94
18 2 0.06
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.13
Consensus pattern (17 bp):
AAAAAATAAATAAAAAT
Found at i:18398382 original size:17 final size:17
Alignment explanation
Indices: 18398328--18398385 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
18398318 AAAAAAATAA
18398328 ATAAAAATAAAAAATAAAG
1 ATAAAAAT--AAAATAAAG
* * *
18398347 --AAAAGTAAAACAAAA
1 ATAAAAATAAAATAAAG
18398362 ATAAAAATAAAATAAAG
1 ATAAAAATAAAATAAAG
18398379 ATAAAAA
1 ATAAAAA
18398386 GAATATTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
15 7 0.23
17 24 0.77
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (17 bp):
ATAAAAATAAAATAAAG
Found at i:18398384 original size:22 final size:20
Alignment explanation
Indices: 18398300--18398431 Score: 63
Period size: 22 Copynumber: 6.2 Consensus size: 20
18398290 GATTTTTATT
* *
18398300 TAAAGAAAATAGAATAATAAA
1 TAAATAAAATAAAATAA-AAA
*
18398321 AAAAT-AAATAAAAATAAAAAA
1 TAAATAAAAT-AAAAT-AAAAA
* *
18398342 TAAAGAAAAGTAAAACAAAAA
1 TAAATAAAA-TAAAATAAAAA
18398363 TAAAAATAAAATAAAGATAAAAA
1 T--AAATAAAATAAA-ATAAAAA
* * * *
18398386 GAATATTAAATAAACCTAATCTAA
1 TAA-ATAAAATAAA-ATAA--AAA
18398410 TAAAT-AAATAAAAT-AAAA
1 TAAATAAAATAAAATAAAAA
18398428 TAAA
1 TAAA
18398432 CAAATAAACA
Statistics
Matches: 85, Mismatches: 16, Indels: 23
0.69 0.13 0.19
Matches are distributed among these distances:
18 6 0.07
20 5 0.06
21 22 0.26
22 32 0.38
23 16 0.19
24 4 0.05
ACGTcount: A:0.73, C:0.03, G:0.05, T:0.19
Consensus pattern (20 bp):
TAAATAAAATAAAATAAAAA
Found at i:18398429 original size:18 final size:18
Alignment explanation
Indices: 18398315--18398439 Score: 64
Period size: 18 Copynumber: 7.1 Consensus size: 18
18398305 AAAATAGAAT
18398315 AATAAAA-AAATAAATAA
1 AATAAAATAAATAAATAA
*
18398332 AA-ATAAA-AAATAAAGAA
1 AATA-AAATAAATAAATAA
*
18398349 AAGTAAAA-CAA-AAATAAA
1 AA-TAAAATAAATAAAT-AA
* *
18398367 AATAAAATAAAGATA-AA
1 AATAAAATAAATAAATAA
* * ***
18398384 AAGAATATTAAATAAACCT
1 AATAA-AATAAATAAATAA
**
18398403 AATCTAATAAATAAATAA
1 AATAAAATAAATAAATAA
*
18398421 AATAAAATAAACAAATAA
1 AATAAAATAAATAAATAA
18398439 A
1 A
18398440 CAAAGAAATG
Statistics
Matches: 79, Mismatches: 21, Indels: 15
0.69 0.18 0.13
Matches are distributed among these distances:
16 1 0.01
17 30 0.38
18 43 0.54
19 5 0.06
ACGTcount: A:0.74, C:0.04, G:0.03, T:0.18
Consensus pattern (18 bp):
AATAAAATAAATAAATAA
Found at i:18398436 original size:22 final size:21
Alignment explanation
Indices: 18398331--18398439 Score: 65
Period size: 22 Copynumber: 4.7 Consensus size: 21
18398321 AAAATAAATA
*
18398331 AAAATAAAAAATAAAGAAAAGT
1 AAAATAAAAAATAAATAAAA-T
* *
18398353 AAAACAAAAATAAAAATAAAAT
1 AAAATAAAAA-ATAAATAAAAT
*
18398375 AAAGATAAAAAGAATATTAAATAAACCT
1 AAA-AT--AAA-AA-A-TAAATAAA-AT
** *
18398403 AATCTAATAAATAAATAAAAT
1 AAAATAAAAAATAAATAAAAT
18398424 AAAATAAACAAATAAA
1 AAAATAAA-AAATAAA
18398440 CAAAGAAATG
Statistics
Matches: 66, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
21 6 0.09
22 28 0.42
23 10 0.15
24 2 0.03
25 5 0.08
26 4 0.06
27 8 0.12
28 3 0.05
ACGTcount: A:0.73, C:0.05, G:0.04, T:0.18
Consensus pattern (21 bp):
AAAATAAAAAATAAATAAAAT
Found at i:18398437 original size:26 final size:26
Alignment explanation
Indices: 18398408--18398462 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
18398398 AACCTAATCT
* *
18398408 AATAAATAAATAAAAT-AAAATAAACA
1 AATAAACAAA-AAAATGAAAATAAAAA
*
18398434 AATAAACAAAGAAATGAAAATAAAAA
1 AATAAACAAAAAAATGAAAATAAAAA
18398460 AAT
1 AAT
18398463 TTCAAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (26 bp):
AATAAACAAAAAAATGAAAATAAAAA
Done.