Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 103 of 195
Found at i:18399362 original size:18 final size:18
Alignment explanation
Indices: 18399306--18399362 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
18399296 CTCCAAAATC
18399306 AAATAAAAAAATAATAGAT
1 AAATAAAAAAATAATA-AT
* * **
18399325 AATTAGAAAAGAT-AGGAT
1 AAATA-AAAAAATAATAAT
18399343 AAATAAAAAAATAATAAT
1 AAATAAAAAAATAATAAT
18399361 AA
1 AA
18399363 TATCAGATAT
Statistics
Matches: 28, Mismatches: 8, Indels: 5
0.68 0.20 0.12
Matches are distributed among these distances:
17 6 0.21
18 11 0.39
19 5 0.18
20 6 0.21
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (18 bp):
AAATAAAAAAATAATAAT
Found at i:18399512 original size:28 final size:27
Alignment explanation
Indices: 18399464--18399606 Score: 100
Period size: 27 Copynumber: 5.1 Consensus size: 27
18399454 TTACAAGAAA
18399464 AAATAATAATAATAATAAATAAATAAT
1 AAATAATAATAATAATAAATAAATAAT
*
18399491 AAATAAATTATAAT-ATATAATAAAT-AT
1 AAAT-AATAATAATAATA-AATAAATAAT
*
18399518 AGAACTATATAAATAA-AATACATATAAATATT
1 A-AA-TA-AT-AATAATAATA-A-ATAAATAAT
* *
18399550 AACAGAA-AA-AATAAATAAATAAAGATAT
1 AA-ATAATAATAAT-AATAAATAAATA-AT
*
18399578 ACATAATAATAATAAT-AATAAATAAT
1 AAATAATAATAATAATAAATAAATAAT
18399604 AAA
1 AAA
18399607 ATACATAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 31
0.68 0.08 0.23
Matches are distributed among these distances:
26 4 0.04
27 28 0.31
28 28 0.31
29 10 0.11
30 9 0.10
31 8 0.09
32 3 0.03
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (27 bp):
AAATAATAATAATAATAAATAAATAAT
Found at i:18399605 original size:38 final size:35
Alignment explanation
Indices: 18399440--18399606 Score: 121
Period size: 38 Copynumber: 4.6 Consensus size: 35
18399430 CAATAAGATA
* * *
18399440 AATAA-AAAA-AAATATTACAAGAAAAAATAATAAT
1 AATAATAAAATAAATAATA-AATAAAATATAATAAT
*
18399474 AATAAT-AAATAAATAATAAATAAATTATAAT-AT
1 AATAATAAAATAAATAATAAATAAAATATAATAAT
*
18399507 -ATAATAAATATAGAACTATATAAATAAAATACATATAAAT
1 AATAATAAA-ATA-AA-TA-ATAAATAAAATATA-AT-AAT
* *
18399547 ATTAACAGAAA-AAATAAATAAATAAAGATATACATAAT
1 AATAATA-AAATAAAT-AATAAATAAA-ATATA-ATAAT
18399585 AATAATAATAATAAATAATAAA
1 AATAATAA-AATAAATAATAAA
18399607 ATACATAAAA
Statistics
Matches: 105, Mismatches: 12, Indels: 28
0.72 0.08 0.19
Matches are distributed among these distances:
32 5 0.05
33 4 0.04
34 21 0.20
35 9 0.09
36 2 0.02
37 13 0.12
38 28 0.27
39 13 0.12
40 3 0.03
41 5 0.05
42 2 0.02
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (35 bp):
AATAATAAAATAAATAATAAATAAAATATAATAAT
Found at i:18401673 original size:25 final size:26
Alignment explanation
Indices: 18401636--18401687 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
18401626 CTGGTCCGAT
18401636 CTTAGACTAGGAATGAACT-CGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18401661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18401687 C
1 C
18401688 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18402515 original size:26 final size:26
Alignment explanation
Indices: 18402479--18402531 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18402469 CCAGTCCGAT
*
18402479 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
18402505 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18402531 C
1 C
18402532 CGAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18403384 original size:26 final size:26
Alignment explanation
Indices: 18403345--18403397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18403335 TCGGTCCGAT
* *
18403345 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGAGAATGAACTCCGTATG
18403371 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGATTGAGAATGAACTCCGTATG
18403397 C
1 C
18403398 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGAGAATGAACTCCGTATG
Found at i:18403816 original size:26 final size:26
Alignment explanation
Indices: 18403780--18403831 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18403770 ATCGATCCGA
18403780 TCTTAGACTGGGAATGAACTACGTAT
1 TCTTAGACTGGGAATGAACTACGTAT
*
18403806 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTACGTAT
18403832 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTACGTAT
Found at i:18405596 original size:26 final size:27
Alignment explanation
Indices: 18405560--18405617 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
18405550 CCAATCCAAT
*
18405560 CTTAGATTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
*
18405586 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18405613 CTTAG
1 CTTAG
18405618 TCAACCCCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:18407385 original size:26 final size:26
Alignment explanation
Indices: 18407356--18407408 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18407346 CCGATCCGAT
*
18407356 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGAATG
*
18407382 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTAGGAATGAACTCCGAATG
18407408 C
1 C
18407409 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGAATG
Found at i:18408053 original size:905 final size:902
Alignment explanation
Indices: 18403584--18409703 Score: 7614
Period size: 905 Copynumber: 6.8 Consensus size: 902
18403574 ACGAGCACCC
* * * *
18403584 ATATAAGGGCGAAGTACCAGCACCCATCGTACATCCTGTGCGCACACCCCCCTCAGCCCGCCCGA
1 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTCGGCCC-CCCGA
* * ** * *
18403649 TCATCGGAAACCAAATGCCGTCATTCAGGTTCTCTGACGATGCTCCAGCAATGGTGCCCCGACGA
64 TCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGA
* ** * *
18403714 AGAGAAATG-AGGCACCAGCACATGCCCGAGCTTAGAATGTGCTGCCACAACCCTCGAT-CGATC
129 AGAAAAATGCA-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATC
* *
18403777 CGATCTTAGACTGGGAATGAACTACGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
193 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * * *
18403842 ACCCACGAAACGAGCATGCAAGCGCTCAGTCGGCCAGAGGGGC-GAGAAGTGCAAGCCGAGGATC
258 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG-GATGCGCAAGCCGAGGATC
* * * *
18403906 -AGTCGGGTCCCCCTCTAG-GTGCTGTCGATCCTACTACCGCAACCCTCGGT-TCGGTCTAATCT
322 GA-TCGGGTCCCCCTCT-GCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCT-GGTCTGATCT
* * * *
18403968 TAGACGGGGAATGAACTCCGTATGCCCAAGCCAACCGACGAAACGATCGAGCGGGCGGACGGGCA
384 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AGCGAGCGGGCGGGCGGGCA
* ** ** * * *
18404033 GGCACTACGCCTGCCAGAGAGACAGGATAAGCAAGTCATGGATCGATAGGGTGGTAGGTGAGTTT
448 GGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18404098 AGGCACATCTTTATATTTCTGCATGCCAATGCCGTTTTTATGGCTTGTAAATTCATACAATGGTC
513 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
18404163 CCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAA
578 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAA
* * * *
18404228 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTG-GAAGGAGATTTGGCCCTAAACTTGGTAG
643 ACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGAGAAGGAGTTTTGGCCC-AAACTTGGTAG
* * *
18404292 ATGTGATCCTTGTATTTTT-TTGGCATGGGA-AAAAAAATTCAGCTAAAAACTCGAATTGTACAA
707 ACGTGATCCTTGTATTTTTGTTGGCAT-GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
18404355 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTACAGACACTTTAATGGCTACTGGCAGCAAAC
771 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
18404420 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTCTTGAGGATTGATGAGGGATAGGG
836 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TC--GAGGTTTGATGAGGGATAGGG
18404485 GGCCA
898 GGCCA
* *
18404490 ATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
1 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGG-CCCCCCGAT
* * * * * *
18404555 TATCGGAACCCCAATGCCGTCGGTCAGGTTTTCTGGCGATGCTTCGGTGATGGTGCCCC-AGTGA
65 CATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGA-CGA
* * * * *
18404619 ACAAAAATGTAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAA-CC-C--T-CG----
129 AGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCC
*
18404675 G----T---C---G-A-G---TCCG-AT-CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAA
194 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
18404723 CCCACGAAACGAGCGTCCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATC-A
259 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGA
* * * * * *
18404787 GTTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCCTAGTCTGGTCTGATCTTAGA
324 -TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGA
** * * * * * *
18404852 CTGGGAATGAACTTTGTATGCCTAACCCATCCGACG-AA-A-CGAACGGGCGAGTGGGCGGGCAC
388 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGCGAGCGGGCGGGCGGGCAGGCAC
* *
18404914 TACACCGGCCAGAGAGATAGGA-GACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
453 TACGCCGGCCAGAGAGATGGGATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* **
18404978 ACATCTTCATATTTATTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
517 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
18405043 AAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCACGATTTTCGAAACTA
582 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTT
* *
18405108 TTTACGGTTTGGGATTTTTTAAAATTTTTTCG-GAAGGAGTTATGGCCCCAAACTTGGTAGACGT
647 TTTACGGTTTGAGATTTTTTAAAATTTTTTCGAGAAGGAGTTTTGG-CCCAAACTTGGTAGACGT
* * * * *
18405172 GATCCTTGTATTTTTTTTGTCATGCACAAAAACATTCACCAAAAAACTCGAAGTGTACAAGATTT
711 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
18405237 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
776 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* **
18405302 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGAAA
841 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
18405364 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGGCCCCCGATC
1 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCGATC
* * * * ** * ** *
18405429 GTCGGAACCCTAATACCGCCGGTCAGGTTCAATGGCGATGCTCCGAAGATGGTGCCCCGGCGAAG
66 ATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGAAG
* * * * * * * *
18405494 AAAAATGCGGCACCAGGACACGCCCAAGCTCAGCATGTGCTGTCGCAACCCTC-AGTCCAATCCA
131 AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCCGATCCG
* * *
18405558 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTTAGTCAAC
195 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * *
18405623 CCCCGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGTGCAAGTCGGGGATCGGT
260 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGAT
* * * * * * * *
18405688 CGGGTCCCCCTCTGCATGTTGCCAATCCTGCTATCGCAACACTTGGTCTGGTCCGATCTTGGAGT
325 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACT
* * *
18405753 GGAAATAAACTCCGTATGCCTAAGCCAACCGACG-AA-A-CGAGCGGGCGGAC--G--GGCACTA
390 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGCGAGCGGGCGGGCGGGCAGGCACTA
* * *
18405811 CGCCAGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGATTAGGCACA
455 CGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * * *
18405876 TCTTCATATTTTTGCATGCCAATGGCATTTTTCTGGCTTGTAAATTCATACAATGGTGCCTTAAG
520 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
18405941 CCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTT-T-TTTTTTACGATTTTTGAAACTTTTT
585 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT
* * *
18406004 ACGGTTTGGGATTTTTTAAAATTTTTTC-AGAAGGATTTTTTGCCCCAAACTTGGTAGACGTGAT
650 ACGGTTTGAGATTTTTTAAAATTTTTTCGAGAAGGA-GTTTTGGCCCAAACTTGGTAGACGTGAT
* ** * *
18406068 CCTTGTATTTTTTTTTTCATGTACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGA-TTTGT
714 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
18406132 AACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAA
779 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
18406197 TCTCAATTGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
844 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
18406256 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCCCCCGAT
1 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCG-GCCCCCCGAT
* * * ** * * ** *
18406321 CATCGAAACCCCAATGCCG-CTGGTCAGCTTCTCCGGTGATGCTCCGGTGATGGTGCCCTGGTGG
65 CATCGGAACCCCAATGCCGTC-GGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * * * * *
18406385 AGAAAAATGCGGCACCAGGACATGCCCGAGCCCAGTATGTGCTACCGTAACCCTCGATCCAATCT
129 AGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCC
* * * *
18406450 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTAAA
194 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
18406515 CCCATGGAACGAGCGTTCAGGG-GCTCATCCGGCCAGAGGGGCAGGTTGCACAAGCCGAGGACCG
259 CCCACGAAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCG
* *
18406579 A-CTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTTGGTCTGGTCTGATCTTAG
323 ATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAG
* * * *
18406643 ACTAGGAATGAACTCCGTATGCCTAAGCGAACCGACGAAACAAGCGGGCGGGCGGGAGGG-AGGG
387 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AGCGAGCGGGCGGGCGGGCA-GG
* * * * *
18406707 CACTACGCCGGCCAGAGAGACGGGATACACAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTCAG
450 CACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
18406772 GCACATCTTCATATTTCTGCGTGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
515 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
18406837 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC-AAAC
580 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* * * * *
18406901 ATTTTTGCAGTTCGAGATTTTTTAAAATTTTTTC-AGAAGGATTTCTTGCCCCAAACTTGGTAGA
645 -TTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGAGAAGGAGTT-TTGGCCCAAACTTGGTAGA
* ** *
18406965 CATGATCCTTGTATTTTTGTTCACATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGA
708 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
18407030 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCT
773 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
18407095 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCA
838 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
18407160 ATAAAAGGGCCAAGTACCAGCACCCTTCTCACATCATGTGCACACACCCCCTCGGCCCCCCGATC
1 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCGATC
* * * * *
18407225 GTCGGAACCCCAATGTCGTCGATCAAGTTCTCCT-ACGATGCTCCGGCAATGGTGCCCCGACGAA
66 ATCGGAACCCCAATGCCGTCGGTCAGGTTCT-CTGACGATGCTCCGGCGATGGTGCCCCGACGAA
* * *
18407289 GAAAAATGCAGCACCAGCACATGCCCGTGCCCAGTATGTGCTACCGCAACCCTCGATCCGATCCG
130 GAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCCG
* *
18407354 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGAATGCCTAAG-CTAA
195 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AA
* * * *
18407418 CCCACGAAACGAGCGTACGGGTGCTCAGCCGGGCAGAGGGGCAGGATGCACAAGCCGAGGATCGA
259 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGA
* * * * * *
18407483 TCGAGTCCCCCTCTGCGTGCTGCTGATGCTGCTACCGCAACCCTTGATCTAGT-TTATCTTAGAC
324 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGAC
* *
18407547 TGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATGAGCGAGCGAGCGGGCGGGCGGGCAG
389 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C-AGCGAGCGGGCGGGCGGGCAG
* *
18407612 GCACTACGCCGGCCAGAAATATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
449 GCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
** * *
18407677 CTCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCC
514 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
18407742 CTTAAGCCTTCACGAGAAGTTTCATGGCAAGACAACTCG-TTTCTATTTTTCACGATTTTCAAAA
579 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
** * * * *
18407806 CTTTTTATAGTTTGAGATTTTTTAAAATTTTTTCGACAAGGAGTTTTGGCCAAAACGTGGTAGAA
644 CTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGAGAAGGAGTTTTGGCCCAAACTTGGTAGAC
18407871 GTGATCCATT-TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
709 GTGATCC-TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
18407935 TTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
773 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
** *
18408000 GTAAAATCTCAAATGCTCTTTAAGCAGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCA
838 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * **
18408065 ATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCTCACCCCCCTGGGCACCTAGAT
1 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTCGGCCCCCCGAT
* * * * *
18408130 CATCGAAACCCCGATGCCGTCGGTCAGGTTCTCTGATGATGCTCCGGTGATGGTGCCCCAACGAA
65 CATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGAA
** * * * * **
18408195 -AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCAATTTG
130 GAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCCG
* * * * *
18408259 ATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCTGTTTGCCCAAGTCAAC
195 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** * * * * * *
18408324 CCATGAAATGAAAGTGCGGGCACTCAGCCGGCCAAAGGGGCTGGATGCGTAAGCCGAGGATTG-G
260 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGAT
* * * * * **** * * *
18408388 CTGGGTCCCCTTCTGCATGCTGCCAATCCTACTACCACAACCCTCAAACCGGTCCGATCTTAGAT
325 C-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGAC
* * ** *
18408453 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGTAGGCGGGCGGGCAC
389 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-CAGCGAGCGGGCGGGCGGGCAGGCAC
* * * *
18408518 TACGTCGGCTAAAGAGAT-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCA
453 TACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
18408582 CATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
518 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
18408647 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
583 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTT
* * * *
18408712 TTACAGTTTGAGATTTTTTTAAATTTTTTTG-GAAGGA-TTTTCAGCCCCAAACTTGGTAGACGT
648 TTACGGTTTGAGATTTTTTAAAATTTTTTCGAGAAGGAGTTTT--GGCCCAAACTTGGTAGACGT
*
18408775 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTT
711 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
18408840 TGTGACCATTTGAAAAAATTATCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
776 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
18408905 AAATCTCAAATGCTCCTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
841 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
18408967 AAATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCACCTAGCCCCCCCCGAT
1 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCG-GCCCCCCGAT
* * * * ** *
18409032 CGTCAGAACCCCAATGTCGCCGGTCAGGTTCTCTGACGATGCTCCAACGATTGTGCCCCGACGAA
65 CATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGAA
* * * *
18409097 GAAAAATG-TGTACCAGCACATGCCCGAGCCCAGCATGTGCAGCCACAA-CC-C--T-CG----G
130 GAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCCG
*
18409152 -TC-----C---G---G---TCCG-AT-CATAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
195 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
18409200 CCATGAAATGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCAGGGATGCGCAAGCCGGGGATCTA
260 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA-GGATGCGCAAGCCGAGGATCGA
* * * * * * **
18409265 CCGGGTCCCCTTCTACGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGAC
324 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGAC
* * * ** * *
18409330 TAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAATGGGCGGGCGGGC-GGAAGGGCA
389 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-CAGCGAGCGGGCGGGCGGGCA-GGCA
* * * *
18409394 CTACGTCGACCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
452 CTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
18409459 ACATCTTCATATTTTTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
517 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
18409524 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTT
582 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTT
** * * *
18409589 TTTACGGTTCAAGATTTTTTAAAATTTTTTC-AAAAGGAGTTTTAGGCCCAAACTTTGTAGATGT
647 TTTACGGTTTGAGATTTTTTAAAATTTTTTCGAGAAGGAGTTTT-GGCCCAAACTTGGTAGACGT
* *
18409653 CATCCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCGA
711 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
18409704 GGTTTGATGT
Statistics
Matches: 4557, Mismatches: 568, Indels: 206
0.85 0.11 0.04
Matches are distributed among these distances:
873 99 0.02
874 78 0.02
875 1 0.00
876 332 0.07
877 282 0.06
878 271 0.06
879 7 0.00
880 174 0.04
881 5 0.00
882 3 0.00
884 1 0.00
885 1 0.00
886 2 0.00
887 2 0.00
890 1 0.00
892 179 0.04
893 434 0.10
894 12 0.00
895 158 0.03
896 2 0.00
897 17 0.00
898 3 0.00
899 182 0.04
900 4 0.00
901 316 0.07
902 470 0.10
903 406 0.09
904 179 0.04
905 594 0.13
906 341 0.07
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCGATC
ATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGAAG
AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGATC
GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGCGAGCGGGCGGGCGGGCAGGCACTAC
GCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTA
CGGTTTGAGATTTTTTAAAATTTTTTCGAGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
Found at i:18409978 original size:26 final size:26
Alignment explanation
Indices: 18409942--18409994 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18409932 CTGGTCCGAT
*
18409942 CTTAGTCTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
18409968 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
18409994 C
1 C
18409995 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:18414865 original size:52 final size:52
Alignment explanation
Indices: 18414807--18414911 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
18414797 TTTACGGTTT
18414807 GAGATTTTTTAAAATTGTTTTGGAAGGAGCTTTGGCCCCAAACTTTGTGGAC
1 GAGATTTTTTAAAATTGTTTTGGAAGGAGCTTTGGCCCCAAACTTTGTGGAC
18414859 GAGATTTTTTAAAATTGTTTTGGAAGGAGCTTTGGCCCCAAACTTTGTGGAC
1 GAGATTTTTTAAAATTGTTTTGGAAGGAGCTTTGGCCCCAAACTTTGTGGAC
18414911 G
1 G
18414912 TGATCCTTGC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (52 bp):
GAGATTTTTTAAAATTGTTTTGGAAGGAGCTTTGGCCCCAAACTTTGTGGAC
Found at i:18415375 original size:26 final size:26
Alignment explanation
Indices: 18415298--18415377 Score: 142
Period size: 26 Copynumber: 3.1 Consensus size: 26
18415288 AGTCTGATCT
*
18415298 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCC
18415324 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
18415350 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
18415376 TA
1 TA
18415378 AGTCAACCTA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:18416681 original size:900 final size:895
Alignment explanation
Indices: 18409711--18424139 Score: 15324
Period size: 872 Copynumber: 16.3 Consensus size: 895
18409701 CGAGGTTTGA
* * *
18409711 TGTGAGTTCTAGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACTAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * * *
18409776 GCACATCATGTGTGTATA--CCCCCAGCCCCCCGATCGTCGGAACCCAAATGCCGTCGGTCAAGT
66 ACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* ** *
18409839 TCTCCGACGATGCTCC-GACGATGGTGCCTCGGTGAAGAAAAATGCGACACC-GACACATG-CTC
131 TCT-CG-CGATGCTCCAG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG-CACATGCCT-
* * * **
18409901 GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGTCTGGGAATGAACTCTATA
191 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
*
18409966 TGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
256 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * * **
18410031 GCCAACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGAGTCCCCCTCTTTGTGCTG-TCGA
321 GTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-GA
* *** * * * *
18410095 TCCTACTGTTGTAACCCTCGGTCCGGTCCGATCTTAGGCTGGGAAAGAACTCCGTATGCCTAAGC
385 TCCTTCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGC
* * * * *
18410160 CAACCGACGAAAGGAAC-GG-GTG-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGC
449 CAACCGACGAAACGAGCGGGCGGGCGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGC
* * * * *
18410222 CATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TACGTGCGAATGCCATT
514 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
18410286 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTGCATGACAAGACGA
579 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
18410351 CTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTTTCG
644 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * * * * *
18410416 AAAAGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCCTGTATGTTTGGTGGCATGCACAAAAAA
709 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
** *
18410481 ATTCAATTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
774 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
18410546 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
839 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
18410603 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
18410668 ACACATCATGTGTGCACACCCCCCCTCGGCTCCCTCGATCGTCGAAACCCCAATTCCACTGGTCA
66 ACACATCATGTGCGCACA-CCCCCC-CGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * *
18410733 GGTTCTTCGATGATGCTCCGGCGATGGTGCCCCGACGAAG-AAAATGCAGCACCAGCACATG-CT
128 GGTTC-TCG-CGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT
* * * * * * * *
18410796 CGAGCTCAGCATGTGCTGCTGTAACCCTCGATCCGATCTGATATTAGACTGGGAATGAACTCCAT
191 -GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * * *
18410861 GTGCTTAGACTGTGAATGAACTCTGTATGCCTAAGACAACCCACGAAACGAGCGTGTGGGCGTTC
255 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * **
18410926 AATCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTC-GGTCCCCCTATGCATGCTGCCC
320 AGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGAC-CGGGTCCCCCTCTGCGTGCTGCTG
* ** * *** *
18410990 ATCCTGCTGTCGCAACCCTCGATCCAATCCGATCTTGGACTGGGAATGAACTCCGTATGCCTAAG
384 ATCCTTCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAG
* * * ** *
18411055 CCAACCGACGAAACGAACGGGCGGGTGGCTGGGCACTACGCTGGGCAGAGAGACGGCATGCGCAA
448 CCAACCGACGAAACGAGCGGGCGGGCGGC-GGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
**
18411120 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
512 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
18411185 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCAAGAC
577 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** ** * *
18411250 GACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTGT
642 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTT
* *
18411314 TCAGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
706 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
18411379 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
771 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18411444 CAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGG
836 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
18411504 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
18411569 GCACATCATGTGCGCACA-CCCCCTGGCTCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
66 ACACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * *
18411633 TTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
130 TTCTC-G-CGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGA
** *
18411698 GCCCAGCATGTGCTATCGCAA----C---CC--T-C-A--TT---C------CG-A-TCCG-AT-
193 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18411737 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGC
258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * ** * * *
18411802 CGGCCAGACGGGCGAGATGCGCAAGTC-GTTGATCGGTCGGGTTCCCTTCTGTGTGCTGCTGATC
323 CGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * * ** *
18411866 CTGCTGCCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
387 CTTCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
* * * *
18411931 ACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGTCAACCAGAGAGACGGGATGGGTA
451 ACCGACGAAACGAGC--G-GG-CGGGC-GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCA
*
18411996 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
511 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
18412061 ATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCATGA
576 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
18412126 CGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTGTT
641 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT-TT
* * * * *
18412191 TT-GGAAGGGGCTTTGGCCCCAAACTTTGTGGACGTGATCCTTGTATTTTTTTTTTGGCATGCAC
705 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGCAC
*
18412255 AAAAAAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
768 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
18412320 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
833 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
18412383 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * *
18412448 GCACATCATGTGCGCACACCCCCTCGGCTCCCTCGATC-ACTGGAACCGCAATGCCGTCAGTCAG
66 ACACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAG
*
18412512 GTTCTCCGACGATGCT-CAGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCT
129 GTTCT-CG-CGATGCTCCA-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT
* * *
18412576 GAGCCTAACATGTGCT-CTTGCAA----C---CC--T-CGATC-----C---G---G---TCCG-
191 GAGCCCAGCATGTGCTGC-CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * * *
18412615 AT-CTTAGACTGGGAATGTACTCCGTATGCCTAAGTCAACCTATGAAATGAGCGCGCGGGCGTTC
255 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * *
18412679 AGTCGGCCAGACGGGTGGGATGTGTAAGCC-GCAGATCGATCGGGTTCCCCTCTGTGTGCTG-TC
320 AGTCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGACCGGGTCCCCCTCTGCGTGCTGCT-
* * * * *
18412742 GATCCTACTACCGCAACCCTCAGTCCGGTCCCATCTTAGACTAGGAATGAACTCCATATGCCTAA
383 GATCCTTCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAA
* * * ** * *
18412807 GCCAACCGACGAAATGAGCGAGTG-GATGAGTGGGCGGGCACTGCATC-AGCCAAAGAGACAGGA
447 GCCAACCGACGAAACGAGCG-G-GCG--G-G-CGGCGGGCACTACGCCGA-CCAGAGAGACGGGA
* * * **
18412870 TGTGCAAGTCGTGGATCGATAGGGTGTTACATGGGTTTAGGCACATCTTCATATTT-TGGCATGC
505 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGC
* * **
18412934 CAATGCCATTTTAATGGCTTTTAAATTCATACAATGGTAACTTAAGCCTTCACGTGAAGTTTCAT
569 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * * *
18412999 GGCAGGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGATTCGGGATTTTTTTA
634 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
* * *
18413064 AATTTTTTCGGAAGGACTTTAGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
699 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
18413129 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
764 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
18413194 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGG
829 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
18413259 GG
894 GG
*
18413261 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * ** * *
18413326 GCACATCATGTGTGCACA-CCGCCCGGCTCCCCCGATCACCGGAACCCCAATGTCGTCGGTCAGG
66 ACACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* ** *
18413390 TTCTCCGGCAATGCTCC-GACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCG
130 TTCT-C-GCGATGCTCCAG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTG
**
18413454 AGCCCAGCATGTGCTATCGCAACCCT---T---G---G-TC-----C---G---G---TCCG-AT
192 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
18413494 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAATGAGCGCGCGGGCGCTCAG
257 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * *
18413558 TAGGCCAGACGGGCGGGATGCGCAAGCC-GCGGATCGGTCGGGTTCCCCTCTGTGTGCTG-TCGA
322 TCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGACCGGGTCCCCCTCTGCGTGCTGCT-GA
* * * * ** * *
18413621 TCCTGCTGCCACAACCCTCGATCTAATCCGATGTTAGACTGAGAATGAACTCCATATGCCTAAGC
385 TCCTTCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTG-GAATGAACTCCGTATGCCTAAGC
* * * * *
18413686 CAAACGATGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCA
449 CAACCGACGAAACGAGC--G-GG-CGGGC-GGCGGGCACTACGCCGACCAGAGAGACGGGATGCG
* *
18413751 CAAG-TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGGCAATG
509 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
18413815 CCATTTTTATGGCTTGTAAATTCATACAATGG-CCCATTAAGCCTTCACGTGAAGTTTCATGGCA
574 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
18413879 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-TAATT
638 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * * *
18413943 TTTTCGGAAGGAGTTTTGGCACCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTTTGGCGTGC
703 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGC
* *
18414008 ACAAAAAAATTCAGCTTAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCC
766 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
18414073 CATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
831 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
18414138 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * ** ** ** **
18414203 GCACATCATGTGTGTACACCCCCTCGGCTCCCTGGATCACCGGAACCTTAATGCCATCGGTCAGG
66 ACACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * *
18414268 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGA
130 TTCT-CG-CGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGA
* * ** *
18414333 GCCTAACATGTGCTGTTGCAA----C---CC--T-CGATC-----C-----A-G---TCTG-AT-
193 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18414372 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGCGCGGGCGCTCAGT
258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * * **
18414437 AGGCCAGACGGGCGGGATGTGCAAGCC-GCGGATCGATCGGGTTCCCCTTTGTGTGCTGCCAATC
323 CGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * * * * * *
18414501 CTACTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATAAACTGCATATGCCTAAGCCA
387 CTTCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
18414566 ACCGACAAAATGAGTGAGCGGACGAGCGGGCGGGCACTACGTC-AGCCAAAGAGACGGGATCCGC
451 ACCGAC-GAA--A-CGAGCGGGCGGGC-GGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGC
* * *
18414630 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATTCCAATGC
510 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
18414695 CAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAG
575 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
18414760 ACGACTCGTTTTCTATTTTTCACGAGTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTGT
640 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT-T
* * * * * * *** * *
18414825 TTT-GGAAGGAGCTTTGGCCCCAAACTTTGTGGACGAGAT-TTTTTAAAATTGTT---TTG--GA
704 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
** ** ** *** * * * ** *
18414883 AGGAGCTTTGGCCCCAAACTTTGTGGACGTGATCCTTGCATTTTTTTTTGGCATGCACAAAAAAA
769 AAAAAATTCAGCTAAAAAC----TCGAAGTG-TACAAG-A-----TTTT-G--TG-AC-----CA
* *** ** * ** **
18414948 TTCAGCTTAAAACTCGAAGTGTACAAGATTTTGTGAC-CATTTGAAAAAAGTGTCCCCATTTCAG
814 TT----TGAAAA----AAGTGT-CCCCA-TTTCAGACAC-TTT-----AA-TGGCTAC-TGGC--
* * * * * * *
18415012 AGCCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
859 AG-C---AA--AC--CT-GTA--AAA--TCTCAAAT-GC---T-CT-TTAAGGGGG
* * * * * * ****
18415068 -GT--G---T-GA-GTTT-TTGAGGTTTGATGAGGGATAGGTGGCCA-ATATGAGGGCCAAGTAC
1 TGTGAGTTCTCGAGGTTTGATGAGG---GAT-A-GG---GG-GCCAATATAAG-GGCCAAGTACC
* * * *
18415123 ACCAGCACCCATCACACATTATGTGCGCACAGCTCCCCCCGGCCCCCCCGATCGTTGGAACCCTA
56 AG---CACCCATCACACATCATGTGCGCACA-C-CCCCCCGG-CCCCCCGATCGTCGGAACCCCA
* * * * * *
18415188 ATGCCGTCGGTCAAGTTCT-TCGA-----CA---ATGGTGCACCGATGAAGAAAAATGTGGCACC
115 ATGCCGCCGGTCAGGTTCTCGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * * * *
18415244 AGAACATGCCTGAACCCAGCATGTACTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAA
180 AGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* *
18415309 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCTGTATG
245 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA-A----G--TCAAC-C--CA--
** * * * * * *
18415374 CCTAA-GTCAACCTACGAAATGAGCATGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGCCAGGG
298 CGAAACG--AGCGTGCG----G-GC--GCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGG
* * * * ** *
18415438 ATTTG-TCGGGTCCCCCTCTACATGCTG-TCGAT-CTTGCTGTCGCAACCCTCGGTCCGGTCCGA
354 A-TCGACCGGGTCCCCCTCTGCGTGCTGCT-GATCCTT-CTACCGCAACCCTCGGTCTGGTCCGA
*
18415500 TCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGG
416 TCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGCGG
* * * * ** *
18415565 GCACTACGTCAACCAGAGAGATGGGATGCGTAAGCCGTGGATCGATATTGTGGTAGGTGAGTTTA
479 GCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
18415630 GGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCC
544 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
18415695 CTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTACGATTTTTGAAA
609 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
*
18415760 CTCTTTGTA--GTTCTAGATTTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTA
674 CT-TTT-TACGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
18415822 GGCTTGATCCTTGTATTTTTGGTGGCATGGAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
736 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
18415887 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGCCAGCAAAC
801 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
18415952 CTGTAAAATCTCAAATGCTCTTTAAGGAGG
866 CTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
18415982 AGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** * * * *
18416047 GCACATCATGTGCGCACACCCCCCCGGCCCCCCTGATCACCGGAAGCTCAATGTCGCCGGTTAGG
66 ACACATCATGTGCGCACACCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGG
* *
18416112 TTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCTGA
130 TTCT-C-GCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGA
* * * *
18416177 GCCCAGCATGTGCTGCTGCAACCCTCGTTCCGATCCGATCTTAGACTGGGAATGAACTCCGTACG
193 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* **
18416242 CTTAGACTGGGAATTAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGG-GCTCAG
258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCAG
* ** *
18416306 CCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGCTGCTGATC
322 TCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* ** * *
18416371 CTTCTACCACAACCCTCGGTCTGGTCTAATCTTAAACTGTGAAAGAACTCCGTATGCCTAAGCCA
387 CTTCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCA
* * * * *
18416436 ACCGACGAAATGAGGGGGCGGGCGGTCGGGCACTACGTCGACCAGAGAGATGGGATGCGTAAGCC
451 ACCGACGAAACGAGCGGGCGGGCGG-CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
* * * *
18416501 ATGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCTAATGCCATTT
515 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
18416566 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
580 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
18416631 TCGTTTTCTATTTTTCAGGATTTTTGGAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA
645 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * *
18416696 AAGGAGTTTTGGCCCCAAACTTGGTAGTCATGATCCTTGTATTTTTGTTTGCATGCACAAAACAA
710 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
18416761 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
775 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18416826 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
840 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
18416882 TGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAGGGGCCATGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
18416946 ACCCATCATGTGCGCACACCACCCCCCCGGCCCCTCGATCGTCGGAACCCCAATGCCACCGGTCA
66 ACACATCATGTGCG--CA-CACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC-
* ** * **
18417011 AGATT-TCCGGCGATGCTCTGGCGGTGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCC
127 AGGTTCT-C-GCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
** * * * * * *
18417075 CAAGCCCAGTATGTGCAGTCGCAACCCTCGGTCCTGATCCGATCTGACACTGGGAATGAACTCCG
190 TGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * * * *
18417140 TATGCTTAGACTGGCAATGAGCTCCGTATGCCTAAGTCAACTCACAAAATGAGCGTACGGGCGTT
254 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * * ** ** *
18417205 CACCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATTGGGTCCCCCTCTATGTGCTGTTG
319 CAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTG
* * * *
18417270 ATCCTACTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCAAAG
384 ATCCTTCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAG
** * * * *
18417335 CCAATTGATGCAACGA----GC--G-GGCGGACACTACGCCGACCAGAGAGATGGGATGCGCAAG
448 CCAACCGACGAAACGAGCGGGCGGGCGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAG
* * * * *
18417393 TCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTTCATGCCAATGCCAT
513 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
18417458 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
578 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** ** * *
18417523 ACTCGTTTTTTATTTTTCACAATTTTCCAAACCTTTTACGGTTTGAGATTTTTTAAAATTTTTTC
643 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * *
18417588 GGAAGGATTTTTGGCCCCAAACTTAGTAGACATGATCCTTGTAATTTTGTTGGCATGCAC-AAAA
708 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
18417652 AATTCATCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-CTT--
773 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
18417714 -----TTTAATTGCTACTGGCAGTAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGG
838 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
18417767 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
18417832 ACACATCATGTGCGCACACCCCCGCCGGCCCCCCCGATCGTCGAAACCACAATGCCGTCGGTCAG
66 ACACATCATGTGCGCACACCCCC-CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * * *
18417897 GCTCTTCGACGATGCTCCAGCGATGGTGCCCC-AGTGAAGAAAAATACGGCATCAGCACATGCCC
129 GTTC-TCG-CGATGCTCCAGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCT
** *
18417961 GAGCCCAGCATGTGCTATCGCAA-------TCC--TCAG-TC-----C--GG--T----T-CG-A
191 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
18418001 T-ATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGGTCA
256 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * * * **
18418065 GTCGGCCAGAAGGGCAGGATATGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGAGCTGCCAAT
321 GTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGAT
* ** * *
18418130 CCTGCTACTACAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGGACTCCGTATGCCTAAGCC
386 CCTTCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCC
* * * * ** * **
18418195 AACTGATGAAACGAGCGGGCGGGCAGACAGGCACTACGTTGGCCAGAGAGACACGATGCGCAAGC
450 AACCGACGAAACGAGCGGGCGGGC-GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGC
* * *
18418260 CGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTACATGTCAATGCCATT
514 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
18418325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
579 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
18418390 CTCGTTTTCTATTTTTCATGA-TTTTCAAAGCTTTTTGCGGATT-GGGATTTTTTAAAATTTTTT
644 CTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTTACGG-TTCGAGATTTTTTAAAATTTTTT
* * * *
18418453 CGGAAGGATTTTTGGCCCCTAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAA
707 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18418518 AAATTCAGCTAAACACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTT
772 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
18418583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
837 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
18418642 TGTGAGTTCTCGAGGTTTGATGAGGGAAAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
18418707 ACACATCATGTGCGCACA-CCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCACTGGTCAGGT
66 ACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * *
18418771 TCTTCGGCGATGCTCCAGCGATGGTGCCCCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAG
131 TC-TC-GCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAG
* * * * *
18418836 CCCAGCATGTGCTGCCGCAACCTTTGATCCGGTCC-ATTCTTAGACTGGGAATGAACTCTGTACG
194 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
18418900 CTTAGACTGGGAATGAACTCAGTATGCCAAAGTCAATCAACAAAACGAGCGTGCGGGTGCTCAGT
258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
18418965 CGGCCAGAGGGGCGAGATGCGCAAGTCGGGGGTCGATCGGGTCCCCCTCTG-GATGCTGCCGATC
323 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCG-TGCTGCTGATC
* *** ** * *
18419029 CTGCTGTAGCAAAACTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
387 CTTCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
* * *
18419094 A-C--CG--A-G-GCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCC
451 ACCGACGAAACGAGCGGGCGGGC-GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
*
18419152 GTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
515 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
18419217 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGAC
580 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
18419282 TCGTTTTCTATTTTTCACGA-TTTTGAAAACTTTTT-CGGTTAG-GTATTTTTTAAAATTTTTTC
645 TCGTTTTCTATTTTTCATGATTTTTG-AAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTC
* *
18419344 GGTAGGTGTTTTGGCCCCAAAC-T--T-G--GT-A-----G-A----------CAT----AAAAA
708 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
** *
18419382 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTTA
773 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
** *
18419447 GACACTTTAATGGCTACTGGCAGCAAATATGTAAAATCTTAAATGCTCTTTAAGGGGG
838 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
18419505 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGAGCCAAGTACCAGTACTCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** *
18419570 GCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAAGT
66 ACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
18419635 TCTCCGACGATGCTTCAGCGATGGTGCCCTGGCGAA-AAAAATGTGGCA-CAGCACAT--CTCGA
131 TCT-CG-CGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GA
*
18419696 GCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
193 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18419761 CTTGGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGT
258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * ** **
18419826 CGGCCAGAGGGGCGGCATGCGCAAGCCAAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAAT-C
323 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * *
18419890 TTGCTGCCGCAAACCTTGGTCTGGTCCGATCTTAGACTACGAATGAACTCCGTATGCCTAAGCCA
388 TT-CTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
* * *
18419955 ACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGATACGGGATGCGCA
451 ACCGACGAAACGAGC--G-GG-CGGGC-GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCA
* *
18420020 AGCCGTGGATCGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
511 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
18420085 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGTAAGA
576 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
18420150 TGACACGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTC-AAATTTTTTAAATTTTT
641 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG-TTCGAGATTTTTTAAAATTTT
* * * * *
18420214 TTCGAAAGGATTTTTGGCACTAAACTTGGTAGACGTGATCCTTGTATTATTGTTGGCATGCACAA
705 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* ** * * *
18420279 AAAAACTCAGCTAAAAACTTAAAGTCTACAAGATTTTGTGACCATTTCAAAAAAATGTCCCCATT
770 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18420344 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
835 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * *** *
18420405 TGTAAGTTTTCAAGTTTTGATGCA-GGATAGGGGGCCAATATAAGGTTGAAGTACCAGTACCCAT
1 TGTGAGTTCTCGAGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* *
18420469 CACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG-CTGGAACCCCAATTGTCGCCGATCA
65 CACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAA-TGCCGCCGGTCA
*
18420533 GGTTCTC-CG--G-T-----GATGGTG-CCCGACGAAGAAAAATGCGACACCAGCACATG-CTCG
128 GGTTCTCGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-G
* * * ** * *
18420587 AGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGCCATGAACTTCATAT
192 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
18420652 GCTTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGGCGCTCAG
257 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
18420717 TTGGCCAGAGGGGCGGGATGTGCAAGCTAAGGATCGACCGGGTCCCCCTCTGTGTGCTGCTGAT-
322 TCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * * * *
18420781 CTTGTTGCCGCAACCCTCAGTCCGGTCTGGTCTTAGACTGAGAATGAACTCCGTATGCCTAAGCC
387 CTT-CTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTG-GAATGAACTCCGTATGCCTAAGCC
* * *
18420846 AACCGACGAAATGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGCGATGCGCAA-C
450 AACCGACGAAACGAGCGGGCGGGC-GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGC
* * *
18420910 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCATGCCAATACCAT
514 -CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
18420975 TTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTGACGTGAAGTGTCATGGCAAGACG
578 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
18421040 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
643 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * *
18421105 GGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCATTGTATTTATGTTGGCATGCACAAAAA
708 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
18421170 AATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
773 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
18421235 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
838 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
18421293 TGTGAGTTCTTGAGGTTTGATGAGGGTTAGGGGGCCAATATGAGGGCC-AGTTACCAGCACCCAT
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG-TACCAGCACCCAT
** * * * * * *
18421357 TGCACATTATGTGTGCACAGCACCCCCGACCCCTCCGATCGTCGGAACCTCAATGCCACCGGTCA
65 CACACATCATGTGCGCACA-CCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * ** *
18421422 AG---T-----T-CTCCAGCGATGGCGCCCCGACGAAGAAAAATATGGCACCAGCACATACCTGA
128 GGTTCTCGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGA
* * *
18421478 GGCCAGCATGTGCTGCTGCAA----C---CC--TCAG-TC-----C--GG--T---CT--G-AT-
193 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18421517 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGTTCAGT
258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* *
18421582 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTTGATCC
323 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * *
18421647 TGCTACCGCAACCCTCAGTCTGGTCC-ATTCTTATACTGGGAATGAACTCCGTATACCTAAGCCA
388 TTCTACCGCAACCCTCGGTCTGGTCCGA-TCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18421711 ACTGACGAAACGAGTTGGCGGGCGGGCGAGTGGACGGGCACTACACCGACCAAAGAAAAGGGATG
451 ACCGACGAAACGA----GCGGGCGGGC----GG-CGGGCACTACGCCGACCAGAGAGACGGGATG
* ** *
18421776 CGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAG
507 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
18421841 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
572 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
18421906 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAATTTTTTGCGGTTCGGGATTTTTTGAAAT
637 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* *
18421971 ATTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCA
702 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
18422035 CAAAACAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
767 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
18422100 ATTTCAGGCACTTTAATGGCTACTTGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
832 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
18422164 TGTGAGTTCTCGAAGTTTGATGAGCGATAGGGGGCCAATATGA-GGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
18422228 ACACATTATGTGCGCACAGCCCCCGCCGGCTCCCCTGATCGTCGGAACCCCAATGCCGCTGGTCA
66 ACACATCATGTGCGCACA-CCCCC-CCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * *
18422293 AG-T-T--C--T--TCGA-CGATGGTGCCTCGACGAAGAAAAAT---G---C-G---A---C--A
128 GGTTCTCGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGA
* * * * * *
18422334 --CCAGCATGTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAAACTGGAAATGAGCTCCGTATG
193 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * * **
18422397 CTTAGATTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTTTGGACACTCAAC
258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * * *
18422462 CGGCCAAAGGGGCGGGATGTGTAAGCCTGGGATCGGCCAGTTCCCCCTCTGCGTGCTGCCGATCC
323 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
* *
18422527 TACTGCCGCAACCCTCGGT-TCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
388 TTCTACCGCAACCCTCGGTCT-GGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
* * *
18422591 ACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGTCGACCGGAGAGACGGGATGCGCAAGCC
451 ACCGACGAAACGAGCGGGCGGGC-GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
* * * * *
18422656 GTGGATTGATAGTGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
515 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
18422721 TTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
580 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *** * *
18422786 TCGTTTTCTATTTTTCATAATTTTTAAAACTTTTTGTTGTTCGGGATTTTTTAAAATTTTTTTGG
645 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * *
18422851 AAGGTGTTTTGG-CACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAGA
710 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
18422915 TTCAGCTTAAAACTCGATGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
775 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18422980 CACTTCAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGG
840 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
18423036 TGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
18423101 GCACATCATGTGTGCACA-CCCCCTGGCCCCCTCGATCGTCGGAACCCCAATGTCGCCGGTCAGG
66 ACACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGG
*
18423165 TTCTC-CG--G-T-----GATGGTG-CCCGACGAAGAAAAATGTGGCACCAGCACATG-CTCGAG
130 TTCTCGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAG
* *
18423219 CCCGGCATGTGCTGCCACAACCCTCGGTCC-G---G-TC-----C-------G-A-T-C-----C
194 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* *
18423259 -TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGTC
259 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
* * * * * ** *
18423323 GACCAGAGGGGCAGGATGCGCAAGCC-GAGGATCGGCCTGGTCCCACTCTATGTGCTACTGATCC
324 GGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
** * * *
18423387 AGCTATCGCAACCCTCGGTCCGGTCC-ATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCA
388 TTCTACCGCAACCCTCGGTCTGGTCCGA-TCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
** *** * * * *
18423451 ACCGACGAAACGAGTTGGCGGGCAAAAGGGCACTACACCGGCCAAAGAGACAGGATGCGCAAGCC
451 ACCGACGAAACGAGCGGGCGGGC-GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
* *** *
18423516 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTATGTGCCAGTGCCATTT
515 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
18423581 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGAC
580 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
18423646 TCGTTTTCTATTTTTCA-G------G--AC-TTTT-C----AG-GATTTTTTTAAATTTTTTCGG
645 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * *
18423695 AATGAGTTTTGGCCCCAAACTTGGTGGACATGATCCTTGTATTTTTGTTGGCATGTACAAAAAAA
710 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
18423760 TTCAGCTAAAAACTCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCGCATTTCAGG
775 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18423825 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAAGGGGG
840 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
** * * * *
18423881 TGTGAGTTCTCGAGGTTTGATGAGTTATA-GGAGCCAATTTAAGGGCCAAGTATCAGCACCCTTC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * **
18423945 GCACATCATGTGTGCACA-CCCCCCGGCCCCCCCGATCATCGGAACCCCAAAGCAACCGGTCAGG
66 ACACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* ** * * *
18424009 TTCTCCGATGATGCTCTGGCGATGGTGCCCTGACGAAGAAAAAAGTGGCACCAGCACATGCCTGA
130 TTCT-CG-CGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGA
* * * * * *
18424074 GCCCAGTAAGTGCTGCCGCAACCTTCGGTCCGGTCTGATCTTAGAGTGGGAATGAACTCTGTATG
193 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
18424139 C
258 C
18424140 CTAAGCCAAC
Statistics
Matches: 11641, Mismatches: 1385, Indels: 1033
0.83 0.10 0.07
Matches are distributed among these distances:
844 116 0.01
845 192 0.02
847 1 0.00
849 1 0.00
850 5 0.00
851 2 0.00
854 17 0.00
855 7 0.00
856 59 0.01
857 3 0.00
858 178 0.02
859 4 0.00
860 354 0.03
861 234 0.02
862 13 0.00
863 213 0.02
864 255 0.02
865 14 0.00
866 256 0.02
867 68 0.01
868 17 0.00
869 22 0.00
870 78 0.01
871 272 0.02
872 964 0.08
873 265 0.02
874 14 0.00
875 188 0.02
876 192 0.02
877 814 0.07
878 578 0.05
879 425 0.04
880 767 0.07
881 18 0.00
882 7 0.00
883 14 0.00
884 15 0.00
885 177 0.02
886 81 0.01
887 11 0.00
888 454 0.04
889 42 0.00
890 123 0.01
891 209 0.02
892 330 0.03
893 61 0.01
894 270 0.02
895 10 0.00
896 268 0.02
897 66 0.01
898 240 0.02
899 108 0.01
900 835 0.07
901 514 0.04
902 230 0.02
903 2 0.00
904 1 0.00
907 6 0.00
908 14 0.00
909 35 0.00
910 2 0.00
911 25 0.00
912 5 0.00
913 4 0.00
914 15 0.00
915 12 0.00
916 1 0.00
917 4 0.00
918 2 0.00
919 5 0.00
920 133 0.01
921 7 0.00
922 14 0.00
923 7 0.00
924 64 0.01
925 4 0.00
926 2 0.00
927 3 0.00
928 2 0.00
929 12 0.00
930 16 0.00
931 2 0.00
932 4 0.00
933 25 0.00
934 5 0.00
935 41 0.00
936 4 0.00
937 2 0.00
939 1 0.00
942 9 0.00
943 3 0.00
944 7 0.00
945 1 0.00
948 8 0.00
949 2 0.00
950 29 0.00
951 1 0.00
952 3 0.00
955 1 0.00
957 6 0.00
958 3 0.00
960 3 0.00
961 5 0.00
962 2 0.00
963 4 0.00
966 240 0.02
967 23 0.00
968 10 0.00
969 4 0.00
970 111 0.01
971 3 0.00
972 11 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
ACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
TCTCGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCC
CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGG
CCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTTC
TACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGGCGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
Found at i:18419336 original size:26 final size:25
Alignment explanation
Indices: 18419302--18419355 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
18419292 TTTTTCACGA
18419302 TTTTGAAAACTTTTTCGGTTAGGTAT
1 TTTTGAAAACTTTTTCGG-TAGGTAT
* * *
18419328 TTTTTAAAATTTTTTCGGTAGGTGT
1 TTTTGAAAACTTTTTCGGTAGGTAT
18419353 TTT
1 TTT
18419356 GGCCCCAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.20, C:0.06, G:0.19, T:0.56
Consensus pattern (25 bp):
TTTTGAAAACTTTTTCGGTAGGTAT
Found at i:18420668 original size:26 final size:26
Alignment explanation
Indices: 18420627--18420679 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18420617 CTGGTCCAAT
*
18420627 CTTAGACTGGCCATGAACTTCATATG
1 CTTAGACTGGCAATGAACTTCATATG
* * *
18420653 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGCAATGAACTTCATATG
18420679 C
1 C
18420680 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTTCATATG
Found at i:18425732 original size:26 final size:26
Alignment explanation
Indices: 18425694--18425746 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18425684 CTGGTCCAAT
18425694 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18425720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18425746 C
1 C
18425747 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18427131 original size:499 final size:495
Alignment explanation
Indices: 18425989--18427467 Score: 1572
Period size: 499 Copynumber: 3.0 Consensus size: 495
18425979 CGCAAGTCGT
* * * * *
18425989 GGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTGCATGCCAATGCCATTTTT
1 GGAT-GATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTATGCATGCCAATGCAATTTTT
*
18426054 ATAGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACG-TGAAGTTTCATGGCAAGACGACT
65 AT-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTGAAGTTTCATGGCAAGACGACT
18426118 CGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGA
129 CGTTTTCTATTTTTCATAATTTTTGAAACTTTTT-CGGTTCGGGATTTTTTAAAATTTTTT-AGA
*
18426183 AGGAGTTTTGGCCCCAAACTTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
192 AAGAGTTTT-GCCCCAAA-TTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
18426247 TCCAGTTAAAAACTCAAAGTGTACAAGATGTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
255 TTCAGCTAAAAACTCGAAGTGTACAAGAT-TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
18426312 CACTTTAATGGCTACTGGCAA-CAAACCTGTAAAATCTCAAAAGATCTTTTAGGGGGTGTGAGTT
319 CACTTTAATGGCTACTGG-AAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
18426376 CTAGAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCGGCACCCATTGCACATCA
383 CTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
18426441 TGTGCGCACACCCCCTCTTCGGCCCCCCGATCACCAAAACCCCAATGCCGC
448 TGTGCGCACA-CCCC-C-TCGGCCCCCCGATCACCAAAACCCCAATACCGC
* * ** * * ** ** *** * * **
18426492 CGAT--CA-GGTTCTCCAACGAT--GCTCCGACA-AT-GGCACCCTGATG-AAGAAAAATGCGGC
1 GGATGATAGGGTGGT---A-GGTGGGTTTAGACACATCTTCATATTTATGCATG-CCAAT---GC
**** ** *** * * * * *
18426549 ACCA-GCACATGCCCG--AGCCCA-GCATGTGTTGTCGC--AACCCTTGGTC-CGGTCCG-A-TC
58 A--ATTTTTATGCTTGTAAATTCATACA-ATG--GTCCCTTAAGCC-T--TCAC-GT-TGAAGT-
* * * * ** * * *
18426605 TT-A-GACTAG--GAAT-TTTTTAAAATTTTTCATGATTTTCGAAACTTTTTACGGTTTGGGATT
112 TTCATGGCAAGACGACTCGTTTT-CTATTTTTCATAATTTTTGAAACTTTTT-CGGTTCGGGATT
* *
18426665 TTTTAAAATATTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTGTTTTTGT
175 TTTTAAAAT-TTTTTAGAAAGAGTTTTG-CCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
18426730 TGG-ATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGGAGAAGAGTTTGTGACCGTTTGAAAAA
238 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAA
* *
18426794 AGTGTCCCCAATTCAGACACTTTAATGGCTAGTGGAAGCAAACCTGTAAAATCTCAAATGCTCTT
302 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTT
*
18426859 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
367 TAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * ***
18426924 CCCCCATCGCACATCATGTGCGTACACCCCC-CGGCCCTCCGATCGCTGGAACCCCAATACCGC
432 CACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCGATCACCAAAACCCCAATACCGC
*
18426987 GGATGGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTATGCATGCCAATGCAATTTTT
1 GGAT-GATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTATGCATGCCAATGCAATTTTT
18427052 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTGAAGTTTCATGGCAAGACGACT
65 AT-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTGAAGTTTCATGGCAAGACGACT
* * * *
18427117 CGTTTTCTATTTTTCACAATTTTTGAAACTTTTTCTGGTTCAGGATTTTTTAAAATTTTTTCGGA
129 CGTTTTCTATTTTTCATAATTTTTGAAACTTTTTC-GGTTCGGGATTTTTTAAAATTTTTTAGAA
* * * * *
18427182 AGGGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCCCAAAAAATTT
193 AGAGTTTT-GCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
18427247 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
257 CAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
18427312 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTT
321 CTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTA
* * *
18427377 GAGATTTGATGACGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGT
386 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
18427442 GCGCACACCCCCGTTGGGCCCCCGAT
451 GCGCACACCCCC-TCGGCCCCCCGAT
18427468 TGTCGGAACC
Statistics
Matches: 776, Mismatches: 145, Indels: 112
0.75 0.14 0.11
Matches are distributed among these distances:
494 2 0.00
495 40 0.05
496 14 0.02
497 11 0.01
498 70 0.09
499 478 0.62
500 109 0.14
501 20 0.03
502 15 0.02
503 12 0.02
504 4 0.01
505 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (495 bp):
GGATGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTATGCATGCCAATGCAATTTTTA
TGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCATAATTTTTGAAACTTTTTCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGA
GTTTTGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCTCGGCCCCCCGATCACCAAAACCCCAATACCGC
Found at i:18429434 original size:26 final size:26
Alignment explanation
Indices: 18429395--18429447 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18429385 TCGATCCAAT
*
18429395 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18429421 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18429447 C
1 C
18429448 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18429901 original size:902 final size:901
Alignment explanation
Indices: 18426987--18432157 Score: 7003
Period size: 893 Copynumber: 5.8 Consensus size: 901
18426977 CCAATACCGC
* * * * *
18426987 GGATGGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTATGCATGCCAATGCAATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
18427052 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTGAAGTTTCATGGCAAGACGACT
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG-TGAAGTTTCATGGCAAGACGACT
** *
18427117 CGTTTTCTATTTTTCACAATTTTTGAAAC-TTTTTCTGGTTCAGGATTTTTTAAAATTTTTTCGG
130 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTC-GGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
18427181 AAGG-GTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCCCAAAAAAT
194 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-
* *
18427245 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
258 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
*
18427310 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTC
323 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
18427375 TTGAGATTTGATGACGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCAT
388 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** * * * *
18427440 GTGCGCACA-CCCCCGTTGGGCCCCCGATTGTCGGAACCCCAATGTCGTCGGTTAGGTT-TTCGG
453 GTGTGCACACCCCCCG--GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGA
* *
18427503 TGATGCCCCGGCGATGGTGCCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCTC-AGCCCAG
516 CGATGCTCCGGCGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCC-CGAGCCCAG
* *
18427567 CATGTGCTGCCGCAACCCTCGATCCATTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
579 CATGTGCTGCCGCAACCCTCGATCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
18427632 CTGGGAATGAACTCCATAAGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCA
643 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
18427697 GAGGGGCAGGATGCTCAAGCTGGGGATCCG-CCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTG
708 GAGGGGCAGGATGCGCAAGCCGGGGAT-CGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
*** * * * *
18427761 CCACAACCCTCGGT-TCGGACTAATCCTAGACTAGGAATGAACTCCGTATGCC-AA-CCGAA---
772 ATGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACCG
* * ** * **
18427820 A--AAACGA----GTGGACGGGCGGGCGAGCACTACATCGGCCAGAGAGATGGGATGCGCAAGTT
835 ACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
18427879 GT
900 GT
*
18427881 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* *
18427946 ATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * *
18428011 CTTTTCTATTTTTCACGA-TTTTCAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAA
131 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * *
18428075 GGAGATTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGGATGCACAAAAAAATT
196 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATT
* * *
18428140 CAGCTAAAAACTTGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
260 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
*
18428205 CTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
325 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
18428270 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
390 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * *
18428335 GCT-CACACCCCCTCGGCCCCCCCGATCACCGGAACCCCAATGCCATCGGTCAGGTTCTCCGATG
455 G-TGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACG
* * * * *
18428399 ATGCTTCGACGAGGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGTATG
518 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
** * * *
18428464 TGCTGCCATAACCCTCGGATCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGTCTGG
583 TGCTGCCGCAACCCTC-GATCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
18428529 GAATGAATTTCGTATGCCTAAGCCAACCCATTAAATGAGAGTGCGGGCGCTCAGCCGACCAGAGG
647 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * *
18428594 GG-TGGTATGTGCAAGCCTGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCT-
712 GGCAGG-ATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG-ATG
* * * * *
18428657 TAACCCTCGGTCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAA
775 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
18428722 ACGAGCAGGC-GAGCGGGCGGGCGGGCTCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
840 ACGAGCGGGCGGA-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* ** *
18428784 GGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAATTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
*
18428849 ATGGCTTGTAACTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * *
18428914 TTTTTCTATTTTTCA-CAATTTTCAAACTTTTTGT-GGTTTGGGATTTTTTCAAATTTTTTCGGA
131 GTTTTCTATTTTTCATGATTTTTGAAACTTTTT-TCGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * *
18428977 AGGAGATTTGGCCCGAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGGATGCACAAAACAAT
195 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAT
* * *
18429042 TCAGCTAAAAACTTGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAAAC
259 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
* * *
18429107 ACTTAAACGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
324 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
18429172 CGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGTCAAGTACAAGCACCCATCGCACATCATG
389 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** * ** *
18429237 TGTGCACACCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGACGA
454 TGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGA
* * * *
18429302 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGTGCCCAGTAAGT
519 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
18429367 GCTACCGCAACCCTCAGTTCGATCCAATCTTAGACTGTGAATGAACTCCGTATGCTTAGACTGGG
584 GCTGCCGCAACCCTC-GATCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
18429432 AATGAACTCCGTATGCCTAAGTCAACGCATGAAATGAGCATGCGGGCGCTCAGCCAGCCAGAGGG
648 AATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * *
18429497 GCAGGAT-CGCAACCCGGGGATCGACCGGGTCCCCCTTTGCGTGCTATCGATCCTGCTGATGCAA
713 GCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGATGCAA
* * * * * * * *
18429561 CCCTTGATCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATTCCTAAGCCAACCTACGAAATG
778 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * *
18429626 AGCGGGCGGATGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGTCGT
843 AGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
18429685 GAATCGATAGGGCGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* *
18429750 ATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
18429815 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCCGTTCGGGATTTTTTAAAATTTTTTTGGAA
131 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * *
18429880 GGAGTTTTGGCCCCGAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAGACAATT
196 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA-AAAATT
* * * *
18429945 AAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACA
260 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
*
18430010 CTTTAATGGCTACTGGCAGCAAA-CTCATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
325 CTTTAATGGCTACTGGCAGCAAACCT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
18430074 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
389 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
18430139 TGTGCATACCCCCCTCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGC
454 TGTGCACA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGAC
* * *
18430204 GATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
517 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* *
18430269 GTGCTGCCGCAACCCTCGGTCCCATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
582 GTGCTGCCGCAACCCTCGAT-CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
18430334 AGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCCTGTGGGTGCTCAGCCGGCCAGAG
646 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** *
18430399 GGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCACTCTGCGTGCTGTCGATCCTGCT-ACTG
711 GGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGA-TG
* * * * * *
18430463 CAACCCTCAGTTTGGTCTGATCTTAGACTAGGAATAAACTCCGTATCCCTAAGCCATCCGACGAA
775 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * *
18430528 ACGAGCGGGTGGGCGGGCAGGCGGGCATTATGCCGGCCAGAGAGACGGG-TGCGTAAGCCGT
840 ACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
18430589 GGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* *
18430654 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTT
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * *
18430719 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTGCGGTATTTTTTTAAATTTTTTTGGAT
131 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * * *
18430784 GGAGTTTTGGCCCCAAAATTGGAAGACATGATCCTTGTA---CT-TT----T-----AAAAATTC
196 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTC
18430836 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
261 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
* *
18430901 TTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCG
326 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
18430966 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTG
391 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*
18431031 TGCACACCCCCCCGGCCCCCCTCGATCGTCGGAACCCCTATGCCGTCGGTCAGGTTCTTCGACGA
456 TGCACA-CCCCCCGGCCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGA
* *
18431096 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCAAGCCCAGCATGT
519 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * ** *
18431161 GCTACCGTAA-CCTTTAGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
584 GCTGCCGCAACCCTCGA-TC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * ** * * * * *
18431225 GAATGAACTCTGTATGCCTAAGTCAACCCATTAAACAAGTGTACGGGTGCTCAGCCTGCCAGACG
647 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * **
18431290 GGCAGGATGCGTAAGCCGAGGATCGATCGGGTCCCTATCTGCGTGCTGTCGATCCTGCT-ACTGC
712 GGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGA-TGC
* *
18431354 AACCCTCGGTCTGGTCCGATCTTAGACTGGGCATGAACTCCGTATGCCTAAGCCAACCGACGAAA
776 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
*
18431419 CGAGCGGGC--A--GGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGT
841 CGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
18431476 GGATCGACAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACGTGCCAATTCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* *
18431541 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGTCAAGATGACTC
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** * * *
18431606 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTGT-AGTTTGGGATTTTTAAAAATTTTTTCGGA
131 GTTTTCTATTTTTCATGATTTTTGAAACTTTTT-TCGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * * * *
18431670 AGGATTTTTGGCCCCAATCTTTGTACACGTGATCCTTGTATTTTTTTTGGCATTCAAAAAAAAAT
195 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAT
18431735 TCAGCT--AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCAAA
259 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAAA
* * *
18431798 CACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGGGTGAGTTC
323 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18431863 TCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCGCACATCAT
388 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
18431928 GTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG----T-----
453 GTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACG
* * *
18431984 -T-CTCCGGCGATGGTGCCCCGACGAAG-AAAATGTGGCACCAGCACATGCCCCAGCCCAGGATG
518 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * * * * *
18432046 TGCTGTCGTAACCCTCGGTCTGGTCTGATCTTACACTGGGAGTGAACTCCATATGCTTAGACTAG
583 TGCTGCCGCAACCCTCGATC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
*
18432111 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
647 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGG
18432158 AATGAGCGGG
Statistics
Matches: 3812, Mismatches: 402, Indels: 134
0.88 0.09 0.03
Matches are distributed among these distances:
886 156 0.04
887 245 0.06
888 1 0.00
889 12 0.00
890 532 0.14
891 5 0.00
892 42 0.01
893 551 0.14
894 142 0.04
895 5 0.00
896 1 0.00
897 1 0.00
898 31 0.01
899 68 0.02
900 140 0.04
901 296 0.08
902 511 0.13
903 484 0.13
904 451 0.12
905 138 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
TGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATG
CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGATCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA
GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGATGCAACCC
TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
GGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
Found at i:18430328 original size:26 final size:26
Alignment explanation
Indices: 18430299--18430351 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18430289 CCCATCCGAT
*
18430299 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18430325 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18430351 C
1 C
18430352 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18432385 original size:20 final size:21
Alignment explanation
Indices: 18432362--18432408 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
18432352 TTTTAATGTT
*
18432362 TTTTTTAAATTTTTTCGA-GA
1 TTTTTTAAAATTTTTCGAGGA
*
18432382 TTTTTTAAAATTTTTCTAGGA
1 TTTTTTAAAATTTTTCGAGGA
18432403 TTTTTT
1 TTTTTT
18432409 TGAGATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.23, C:0.04, G:0.09, T:0.64
Consensus pattern (21 bp):
TTTTTTAAAATTTTTCGAGGA
Found at i:18432385 original size:21 final size:22
Alignment explanation
Indices: 18432361--18432419 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 22
18432351 CTTTTAATGT
18432361 TTTTTTTAAATTTTTTCGA-GA
1 TTTTTTTAAATTTTTTCGAGGA
* *
18432382 -TTTTTTAAAATTTTTCTAGGA
1 TTTTTTTAAATTTTTTCGAGGA
*
18432403 TTTTTTTGAGATTTTTT
1 TTTTTTT-AAATTTTTT
18432420 AAAATTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 16 0.52
21 2 0.06
22 6 0.19
23 7 0.23
ACGTcount: A:0.22, C:0.03, G:0.10, T:0.64
Consensus pattern (22 bp):
TTTTTTTAAATTTTTTCGAGGA
Found at i:18433634 original size:26 final size:26
Alignment explanation
Indices: 18433605--18433655 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18433595 CTGGTCCGAT
* *
18433605 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18433631 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
18433656 CCCCAAGCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18435398 original size:26 final size:26
Alignment explanation
Indices: 18435362--18435412 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18435352 TGGTCTGATC
18435362 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
18435388 TTAGACTGGGAATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
18435413 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:18436275 original size:26 final size:26
Alignment explanation
Indices: 18436246--18436298 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18436236 CTGGTCTGAT
* *
18436246 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGGCAGGGAATGAACTCTATATG
*
18436272 CTTAGTCAGGGAATGAACTCTATATG
1 CTTAGGCAGGGAATGAACTCTATATG
18436298 C
1 C
18436299 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGGCAGGGAATGAACTCTATATG
Found at i:18436746 original size:884 final size:884
Alignment explanation
Indices: 18433011--18439017 Score: 7983
Period size: 885 Copynumber: 6.8 Consensus size: 884
18433001 CTTCGATCCT
* * *
18433011 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
1 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATG
* * * * *
18433076 CAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGCCAAAACGACTCGTTTTCTATTTTTCATGA
66 CAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* ** * * *
18433141 TTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTTGCCCCAAAC
131 TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
18433206 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAATAACTTGAAGT
196 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
18433271 GTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
261 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
18433336 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
326 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
18433401 GGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCC-CCCGGCC
391 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCGGCC
* *
18433465 CCTCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCAGGCGATGGTGCC
456 CC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC--GC-A---T---GCGATGGTGCC
** * * * * * *
18433530 CCGGTGAAGAAAAATGCGGCACCAGCACGTGCCTGTGCCCAGCATGTGCTACCGCAACCCTCGGT
511 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGT
* * *
18433595 CTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTCCGTATCCC
576 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-AGGGAATGAACTCCGTATGCC
* * * *
18433659 CAAG-CTAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGCCGGGATGTGCAAGCC
640 TAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGG-CGGGATGCGCAAGCC
* * * * * * *
18433723 GGGGATCGGTCGGGTCCCCCTCTACGTG-TGCCGATCCTACTATCGCAACCCTTGGTCTGGTCCA
703 GGGGATC-GACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCCG
** ** * *
18433787 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAATGAGAGGGCGGGCGGG-A
767 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGCGAGCGGGCGGACGGGCA
* *
18433851 GCTACGCCGGCCAGAAAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
832 -CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
18433905 GTGGGTTTACGCACATCTTCATATTT-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
1 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATG
* *
18433969 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCG-TTTCTATTTTTCACGA
66 CAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
18434033 TTTTTGAAACTTTTTACAGTTC-GAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCAAAA
131 TTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
18434096 CTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAG
195 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
18434161 TGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATTGCTACTGGT
260 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
18434226 AGCAAACCTATAAAATCCCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGAT
325 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
18434291 AGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCGCACATCATATGCGGACA-CCTCCCGCC
390 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCG--
* *
18434355 CGCCCCCCCGATCGACGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAACGATGG
453 -G-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C-GC-ATG------CGATGG
* * *
18434420 TGCCCCGGCGAAGAAAAATACGGCTCCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA-CC-
507 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
*
18434483 C--TC--G---G----T---CT--G-AT---CT--G-AT-CTTAGACTGGGAATGAACTCCGTAT
572 CAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTAT
* * * * * * * *
18434524 GCCTAAGTCAACCCACGGAATGAGTGTGCGGGTGCTCAGTTGGCCAGAGGGGTGGGATGCGTAAT
637 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA-GGGCGGGATGCGCAAG
* * * * * *
18434589 CCGGGGATCGACCGGGTCCCCTTCTGTGTGCTACCGATCCTGCTGCCACAGCCCTCGGCCTGGTC
701 CCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTC
* *
18434654 TGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAG-GAGCGGGC--A--G
765 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAGCGAGCGGGCGGACGG
* * * * ** *
18434714 ACACTACACCTGCCAGAGTGACGGGATATGAAAGCCGTGGATCGATAGGGTGGTAG
829 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
18434770 TTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATTCCATTTTTATGGCTTGTAAATTCATG
1 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATG
*
18434835 CAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
66 CAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* ** * * * **
18434900 TTTTTGAAACCTTTCGCGGTTC-GGATTTTTTCAAATTTTTTCGAAAAGAGTTTTGAACCCAAA-
131 TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * *
18434963 TTGGTAGATGTGATCCTTGTATTTTTCTTAGCATGCACAAAAAAATTCAGTTAAAAACGCGAAGT
196 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
18435028 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
261 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
18435093 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
326 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
18435158 GGGGGCCAATATATGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACACCC-CCCGGCC
391 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCGGCC
* * *
18435222 CCCCGATCGTTGAAACTCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCAGATGATGGTGCCC
456 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC-G-C-ATG--C----GATGGTGCCC
* * * *
18435287 CGACGAAGAAAAATACGGCACCAGAACATGCCTGAGCCCAGCATGTGCTGCTGTAACCCTCAGTC
512 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTC
* * *
18435352 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTTCGTATGCCTA
577 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTA
* * * *
18435417 AGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGTGGGATGCGCAAGCCGGG
642 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA-GGGCGGGATGCGCAAGCCGGG
* * * * * * * *
18435482 GATCGGCTGGGTCCCCCTCTGCGTCCTACCGATCCTACTGCCACAACCCTCGATCCGATCCGATC
706 GATCGAC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATC
* * * * * *
18435547 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCAGGCATTA
770 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGCGAGCGGGCGGACGGGCACTA
* * * * *
18435612 CGCCTGCCAGAGTGACGGGATGTGCAAGCCGTGGATCGATATGCTGGTAG
835 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
**
18435662 GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATG
1 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATG
* * * * * *
18435727 C-AGTGGTCCCTTAAGCCTTGATGTGAAGTTTCATGGCAAGAAGACTCATTTTTTATTTTTCACA
66 CAAG-GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
18435791 ATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTCTAGCCCCAAA
130 ATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
18435856 CTTGGTAGACGTGATCCTTGTATTTTT-TGTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAA
195 CTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18435920 GTGTACAAGATTTTGTGACCATTTGAAAAAACTATCCCCATTTCAGATACTTTAATGGCTACTGG
259 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
18435985 CAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCACAAGGTTTGATGAGGGA
324 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
18436050 TAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCTCCCGG
389 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCGG
* * *
18436115 CCCCTCGGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTC-CA-GCGATGGTGCCCCAACGA
454 CCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGCATGCGATGGTGCCCCGACGA
* * *
18436178 AGAAAAATACTGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCAGTCTGGTCT
518 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCT
* * * **
18436243 GATCTTAGGCTGGGAATGAACTCTGTATGCTTAGTCAGGGAATGAACTCTATATGCCTAAGTCAA
583 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
18436308 CCCACGAAACGAGCGGGTGGGCGCTCAGTCGGCCAGACGGGCGGAATGCGCAAGCCGAGGATCGA
648 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA-GGGCGGGATGCGCAAGCCGGGGATCGA
* * * ** * **
18436373 CAGGGTCCCCCTCTGTGTGCTGCTGATCCTGCTACTACAACCCTCAATCTAGTTTGATCTTAGAC
712 C-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGAC
* *
18436438 TAGGAATGAACT-CGTATACCTAAGCCAACCGACGAAGCGAGCGGGCGGACGGGCACTACGCCGG
776 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGCGAGCGGGCGGACGGGCACTACGCCGG
* *
18436502 TCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAG
841 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
18436546 GTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGGCATTTTTATGGCTTGTAAATTCATG
1 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATG
*
18436611 CAAGGGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
66 CAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
18436676 TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
131 TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
18436741 TTGGTAGACGTGATACTTGTATTTTTGTTGACATGAACAAAAAAATTCAGCTAAAAACTCGAAGT
196 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
18436806 GTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
261 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
18436871 GCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCACAAGGTTTGATGAGGGATA
326 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
**
18436936 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTTTCGGCC
391 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCGGCC
* * *
18437001 CCCCGCATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTC-TA-GCGATGGTGCCCCAACGAAG
456 CCCCG-ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGCATGCGATGGTGCCCCGACGAAG
* * *
18437064 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGA
520 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCTGA
* * * * **
18437129 TCTTAGGCTGGGAATGAACTCTGTATGCTTAGTCATGGAATGAACTCTATATGCCTAAGTCAACC
585 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
18437194 CACGAAATGAGCGGGTGGGCGCTCAGTCGGCCAGACGGGCGGAATGCGCAAGTCGGGGATCGACA
650 CACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA-GGGCGGGATGCGCAAGCCGGGGATCGAC-
* * * ** * ** *
18437259 GGGTCCCCCTCTGTGTGCTGCTGATCCTGCTACCGCAACCCTCACTCTAGTTTGATCTTAGACTA
713 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTG
* *
18437324 GGAATGAACTCCGTATACCTAAGCCAACCGACGAAGCGAGCGGGCGGGCGGGCACTACGCCGGCC
778 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGCGAGCGGGCGGACGGGCACTACGCCGGCC
*
18437389 AGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAG
843 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
18437431 GTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGGCATTTTTATGGCTTGTAAATTCATG
1 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATG
18437496 CAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
66 CAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
*
18437561 TTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
131 TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
18437626 TTGGTAGACGTGATACTTGTATTTTTGTTGACATGAACAAAAAAATTCAGCTAAAAACTCGAAGT
196 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
18437691 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
261 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
18437756 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
326 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
18437821 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACAGCCCCCCGG
391 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC--CCTCCCGG
* * *
18437886 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTTTC-C-GGCGATGGTGCCCCAACGAA
454 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGCATGCGATGGTGCCCCGACGAA
** * * *
18437949 G-AAAATGTGGCACCAGCACATGCCCCAGCCCAGGATGTGCTGCCGCAACCCTCAGTCTGGTTTG
519 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCTG
* * * *
18438013 ATCTTACACTGGGAGTGAACTCCATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAAC
584 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
18438078 CCATGAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAGAGGTGGGATGCACAAGCCGGGGATCGGT
649 CCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAG-GGCGGGATGCGCAAGCCGGGGATC-GA
* * * * * * * *
18438143 CGGGTCCCCCTCTACGTGCTGTCGATCTTGCTGCCGCAACCCTCTGTCTGGTTCAATCTTATG-C
712 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATCTTA-GAC
*
18438207 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAGCGGACGGGCAAGCA
776 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AGCGAGCGG-GCGGAC-GG---GCA
* * * *
18438272 CTACTCTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATAGATAGGGTGGTAG
832 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
18438325 GTGGGTTTAGTCACGTCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
1 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATG
* *
18438390 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAGACGACTCGTTTTCTATTTTTCACGA
66 CAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* ** * *
18438455 TTTTTGAAACTTTTTGA-AGTTTGGGAGTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
131 TTTTTGAAACTTTTT-ACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
18438519 CTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAA
195 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
18438584 TGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGC
260 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * ** *
18438649 GGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCAAGTTCTTGAGGTTTGATGAGGGAT
325 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
18438714 AGGGGGCCAATATAAGGGCCAAGTACCA-CACCCATCGCACATCATGTGCGGACACCTCCCCCCT
390 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCTCCCG
*
18438778 GCCCCCCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTG
453 GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C-GC-A-----TG-CGATGGTG
* * * ** *
18438843 CCCCGATGAAGAAAAATACGACTCCAGCACATGCCCGAGCCCAGCATGTGCTGCCATAACCCTTA
509 CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCA
* ** ** * * *
18438908 ATCTAATCCAATCTTAGACTGGCAATGAACTCCGTGTGCTTAGACTA-GGATTTGAACTCCGTAT
574 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-AGGGA-ATGAACTCCGTAT
* **
18438972 GCCTAAGTCAACCAACGAAACGAGCGTTTGGGCGCTCA-TCTGGCCA
637 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GGCCA
18439018 AACTTGGTAG
Statistics
Matches: 4580, Mismatches: 430, Indels: 194
0.88 0.08 0.04
Matches are distributed among these distances:
858 1 0.00
861 2 0.00
862 104 0.02
863 3 0.00
864 1 0.00
865 70 0.02
866 347 0.08
867 43 0.01
868 96 0.02
869 80 0.02
870 3 0.00
871 1 0.00
872 2 0.00
875 3 0.00
876 1 0.00
878 3 0.00
880 1 0.00
881 3 0.00
883 2 0.00
884 823 0.18
885 1027 0.22
886 57 0.01
887 18 0.00
888 187 0.04
889 9 0.00
890 9 0.00
891 247 0.05
892 250 0.05
893 188 0.04
894 800 0.17
895 14 0.00
896 34 0.01
903 1 0.00
904 17 0.00
905 82 0.02
906 51 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATG
CAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCGGCC
CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGCATGCGATGGTGCCCCGACGAAGA
AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGACGGG
TCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAGCGAGCGGGCGGACGGGCACTACGCCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
Found at i:18437159 original size:26 final size:26
Alignment explanation
Indices: 18437130--18437182 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18437120 CCGGTCTGAT
*
18437130 CTTAGGC-TGGGAATGAACTCTGTATG
1 CTTAGGCAT-GGAATGAACTCTATATG
*
18437156 CTTAGTCATGGAATGAACTCTATATG
1 CTTAGGCATGGAATGAACTCTATATG
18437182 C
1 C
18437183 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGGCATGGAATGAACTCTATATG
Found at i:18440303 original size:26 final size:26
Alignment explanation
Indices: 18440267--18440319 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18440257 CCGATCTGAT
18440267 CTTAGACTGGGAATGAAC-TCGGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
18440293 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18440319 C
1 C
18440320 CTATATCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18441126 original size:15 final size:15
Alignment explanation
Indices: 18441106--18441139 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
18441096 ACGAAGAAAA
18441106 ATGCGGCACCAGCAC
1 ATGCGGCACCAGCAC
18441121 ATGCGGCACCAGCAC
1 ATGCGGCACCAGCAC
18441136 ATGC
1 ATGC
18441140 TGCCGTAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.38, G:0.26, T:0.09
Consensus pattern (15 bp):
ATGCGGCACCAGCAC
Found at i:18441204 original size:26 final size:26
Alignment explanation
Indices: 18441167--18441218 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18441157 TGGTCAGATA
18441167 TTAGACTAGGAATGAACTCCGGATGC
1 TTAGACTAGGAATGAACTCCGGATGC
* *
18441193 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGGATGC
18441219 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGGATGC
Found at i:18441371 original size:899 final size:880
Alignment explanation
Indices: 18439620--18444542 Score: 6056
Period size: 869 Copynumber: 5.6 Consensus size: 880
18439610 CTTCGTATGC
* * *
18439620 CTACG-CGGACCAGAGAGACGGGATGCGCAAGCCATCGATGGATAGGGTGGTAGGTGGGTTTAGG
1 CTACGCCGG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
18439684 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
65 CACATCTTCATATTTCTA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * *
18439749 TAAGCCTTCACGTGAACTTTCACGGCAAGACAACTCGTTTTCTATTTGTCACGATTTTTAAAACT
129 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * ** *
18439814 TTTTACGGTTTGAGATTTTTTAAAACATTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
194 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTCAAACTTGGTAGACGT
18439879 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
259 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
* * **
18439944 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGTGGCAAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
18440009 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
18440074 TAGGGGCCAAGTACCA-CACCCATCGCACATCATGTGCGCACACCCCCCTCGGACCCTCGATCGT
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCGATCGT
* * *
18440138 CGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGCAAAGAA
518 CGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * * *
18440203 AAATGCGGCGCCAGCACATGCCCGAGCCCAGCATGTGCTGGCACAACCCTCGATCCGATCTGATC
583 AAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCG-TCTGGTC-G-TC
*
18440268 TTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTTCGTATGCCTATA-TCAACCC
644 ----A-T--G-AT---C-C-G-ATGCTTAGACTGGGAATGAACTCCGTATGCCTA-AGTCAACCC
** * *
18440332 ACGAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCA
694 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG
* * * * * * *
18440397 GGTCCCCCTCTACGTGCTGTCGATCTTGCTGCCGTAACCCTCTATCGGGTCCAATCTTAAACTGG
759 GGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGG
* *
18440462 GAATGAACTCCGTATGCCTAAGTCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCA
824 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * * * *
18440519 CTACGCCGGCCAAAGAGACGGGATGCTCAAGCCGCGGATCAATAGGCTGGTAGGTGGGTTTAGGC
1 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
18440584 ACATCTTCATATTTCTATGTGCCAATGCCATTTTCATGGCCTGTAAATTCATA-AATGGTCCCTT
66 ACATCTTCATATTTCTA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
18440648 AAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCGTTTTTTATTTTTCACGATTTTCAAAACAT
130 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
** * * *
18440713 TTTATAGTTCAGGATTTTTTAAAATTTTTTTTGGAAGGAGTTTTGGCCTCAAACTTGGTAGACAT
195 TTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCTCAAACTTGGTAGACGT
* * *
18440778 GATCCTTGTATTTTTATTGGCATGGAC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAAAATTT
259 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
*
18440842 TGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
18440907 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTATGAGGGATAGGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
18440972 TAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGTGGACACGCCCCCTCGGCTCCCTCGATC
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCC-CGGC-CCCCCGATC
* * * *
18441037 GTCGGAACCCCAATGCCACTGGTCAGGTTCTTCGACGATGCTCCAACGATGGTGCCTCGACGAAG
516 GTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
** *
18441102 AAAAATGCGGCACCAGCACATG-CG-GCACCAGCACATGCTGCCGTAACCCTCGGTCTGGTCAGA
581 AAAAATGCGGCACCAGCACATGCCGAGC-CCAGCATGTGCTGCCGCAACCCTC-GTCTGGTC-G-
*
18441165 TATTAGACTAGGAATGAACTCCGGATGCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACC
642 ---T---C-----ATG-A-TCC-GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * ** **
18441230 CACGAAACAAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATTCATAAGCCAAGGATCGGCC
693 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC
* * * * * * * *
18441295 AGGTCCCCCTCTGCATGCTGGCCATCCTGCTACCACAACCCTCGATCCGATCCGATCTTGGACTG
758 GGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTG
* *
18441360 GGAATGAACTCCGCATGCCTAAGCCAACCGACG-AACGAGCGGGAGGGCGGGCTGGCGGGCA
823 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGCGGGCGGGCA
* * * * * * *
18441421 GTACACCGGCCAGAGAGACGGCATGCACAAGCCGTGGATCGATAGTGTGGTTGGTGGGTTTAGGA
1 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
18441486 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
66 ACATCTTCATATTTCTA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
18441551 AAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTCTCGAAACTT
130 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* * *
18441616 TTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCT-AAACTTGGTAGACAT
195 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCTCAAACTTGGTAGACGT
* *
18441680 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCAAAGTGTACAAGATTT
259 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
* * *
18441745 TGTGACCGTTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
18441810 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * ** * *
18441875 TAAGGGACAAGTACCAGCACCCATCGCATAAAATGTGAG--CA-CCCCCCGGCCCCCCGATCGCC
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC
* * * * *
18441937 AGAACCCCAATGCTGCCGGTCAGGTTCTCCAATGATGCTCCGACGATGGTGCCCCGACGAAGAAA
519 GGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * * * *
18442002 AATGTGGCGCCAGCACATGCCCGAGCCTAACATGTGCTACCGCAA-CC-C-T-TGGTC-CCAT--
584 AATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGGTCGTCATGA
* * * *
18442060 T-CGAT-CTTTGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGAC
648 TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * *
18442123 GCTCAGTCGGCCAGAAGGGTGGGATGCGCAAGCTGGGGATCGACTGGGTCCCCCTCTTCGTGCTG
713 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTG
* * * *
18442188 TCGATCCTGCTACCGCAACTCT-TAGT-CGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCC
778 TCGATCCTGCTACCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
18442251 TAAGCCAACCGATGAAATGAACGGGCGGTCGGTCGGGCA
842 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * * * *
18442290 CTACGCTGGCCAGAGAGATGGGATGCGCAAGCTGTGAATCGATTGGGTGGTAGGTGGGTTTAGGC
1 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
18442355 ACGA-ATTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
66 AC-ATCTTCATATTTCT-AGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
18442419 AAAGCCTTCACGTGAAGTTTCATGGCAAGATGATTCGTTTTCTATTTTTCATGATTTTCAAAACT
129 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * *
18442484 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCCGAAGGAGTTTTTGCC-CTAAATTTGGTAGACG
194 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTC-AAACTTGGTAGACG
* ** * * **
18442548 TGATCCTTGTATTTTTTTTCACCTGCA-AAAAAACAATCAGCTAAAAACTTGAAGTGTACAAGAT
258 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCAAAGTGTACAAGAT
*
18442612 TTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
322 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
18442677 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCAA
387 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
*
18442742 TATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCGCACACCCGCCCCCCGGCCCCCCTG
452 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--C-CCCCCCGGCCCCCC-G
* * *
18442807 ATCGTCGGAACCCCAATGCCG-TCGGCCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAT
513 ATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * *
18442871 GAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA--CAC-TC-GGTC
577 GAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGGTC
* * * *
18442932 --C--GATCCGAT-CCTAG-CTTGGAAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGC
641 GTCATGATCCGATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * ** *
18442991 GTACGGGCACTCAGCAGGCGAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTT
705 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT
* * * ** *
18443056 GCGTGCTGTCGATCCTGCTACTGCAACCCTCGGTTGGGTCTGATCTTAGA-TGGGGAATGAACTC
770 ACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACT-GGGAATGAACTC
* *
18443120 CGTATGCCTAAGCCAACCGACGAAAC-A---GGCAGGTGGGCGGGCA
834 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * * *
18443163 CTATGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGT
1 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
18443228 ACATCTTCATATTTCTGCAG-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
66 ACATCTTCATATTTCT--AGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
18443292 TAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTCTCAAAACT
129 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * * *
18443357 TTTCTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCTGAAACTTGATAGACG
194 TTT-TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTCAAACTTGGTAGACG
* *
18443422 TGATCCTTGTATTTTT-TGTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGAT
258 TGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
* * * * *
18443486 TTTGTGACCATTTGGAAAAAGTATCCCTATTTTAGACATTTTAATGGCTACTGGCAGCAAACCTG
322 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
18443551 TAAAATCTGAAATGCTCATTAAGGGGGTGTGAGTTCTGAAAGTTTGATGAGGGATAGGGGGCCAA
387 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
18443616 TATAAGGGCGAAGTACCAGCACCCATCACACATCATGTGCGCACAGACCCCCCAGCCCCCCCGAT
452 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC--ACCCCCCCGGCCCCCCGAT
* * * * *
18443681 GGTCGGAACCCCAATG-C-C---TCCGG-T-T---A-GGTTCTCCGACGATGGTGACCCGACGAA
515 CGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
* * * * *
18443735 GAAAAATACGGCACTAGTACATGCTCGAGCCCAGCATGTCCTGCTGCAA-CC-C-T-TGGTC--C
580 GAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGGTCGTC
* *
18443794 A-G-TCCGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCGTGC
644 ATGATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * *
18443856 GGGTGCTCAGCCGGCCACAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTACGT
709 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGT
* * * * * *
18443921 GTTG-CTGATCCTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTA
774 GCTGTC-GATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * ** *
18443985 TGCCTAAGCCAACCGACGAAATGGGTGACCGGATGGGCGGCCGGGCA
838 TGCCTAAGCCAACCGACGAAA----CGAGCGGGCGGGCGGGCGGGCA
* * * * *
18444032 CTACGCCGGGCAGAGAGACGGGATGCGCAAACCGTGGATTGATAGGGTGGGAGGTGAGTTTAGG-
1 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
18444096 -CA----C--A--TCT--T--C-AT---ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 ACATCTTCATATTTCTAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * **
18444144 AGCCTTCACGTGAAGGTTCATGGTAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
** * * *
18444209 TTACGGTTTC-AAATTTTTTAAAATGTTTTCGGAAGGATTTTTGGCAC-CAAATTTGGTAGACGT
196 TTACGG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC-CTCAAACTTGGTAGACGT
* * *
18444272 GATCCTTGTATTATTGTTGGCATGCACAAAAAAACTCAACTAAAAACTCAAAGTGTACAAGATTT
259 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
* *
18444337 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
18444402 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
18444467 TAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGCC
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC
*
18444532 GAAACCCCAAT
519 GGAACCCCAAT
18444543 CGTCGGGCCA
Statistics
Matches: 3524, Mismatches: 422, Indels: 208
0.85 0.10 0.05
Matches are distributed among these distances:
847 29 0.01
849 266 0.08
850 101 0.03
853 2 0.00
854 1 0.00
859 3 0.00
860 2 0.00
861 252 0.07
862 4 0.00
863 1 0.00
865 1 0.00
866 2 0.00
867 5 0.00
868 8 0.00
869 514 0.15
870 1 0.00
871 3 0.00
872 65 0.02
873 325 0.09
874 266 0.08
875 25 0.01
876 239 0.07
877 49 0.01
880 2 0.00
885 1 0.00
894 5 0.00
895 1 0.00
897 84 0.02
898 276 0.08
899 408 0.12
900 18 0.01
901 93 0.03
902 181 0.05
903 287 0.08
904 1 0.00
905 2 0.00
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (880 bp):
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGG
AACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGGTCGTCATGATCC
GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCG
ATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
Found at i:18445274 original size:769 final size:753
Alignment explanation
Indices: 18443805--18445298 Score: 2149
Period size: 769 Copynumber: 2.0 Consensus size: 753
18443795 GTCCGATCTT
* * *
18443805 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCGTGCGGGTGCTCAGCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGG
*
18443870 CCACAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTACGTGTTGCTGATCCTGC
66 CCACAGGGGCGGGATGCGCAAACCAGGGATCGGTCGGGTCCCCCTCTACGTGTTGCTGATCCTGC
*
18443935 TGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
131 AGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
18444000 ACGAAATGGGTGACCGGATGGGCGGCCGGGCACTACGCCGGGCAGAGAGACGGGATGCGCAAACC
196 ACGAAACGAGCGACCGGATGGGCGGCCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAACC
** *
18444065 GTGGATTGATAGGGTGGGAGGTGAGTTTAGGCACATCTTCATATTTTTATGGCTTGTAAATTCAT
261 GTGGATCAATAGGGTGGGAGGTGAGTTTAGGCACATCTTCATATTTTTATGCCTTGTAAATTCAT
*
18444130 ACAATGGTCCCTTAAGCCTTCACGTGAAGGTTCATGGTAAGACGACTCGTTTTCTATTTTTCACG
326 ACAATGGTCCCTTAAGCCTTCACGTGAAGGTTAATGGTAAGACGACTCGTTTTCTATTTTTCACG
* ** *
18444195 ATTTTTGAAACTTTTTACGGTTTCAAATTTTTTAAAATGTTTTCGGAAGGATTTTTGGCACCAAA
391 ATTTTTGAAACTTTTTACGGTTGCAAATTTTTTAAAATGTTTTCAAAAGGATTTTGGGCACCAAA
* *
18444260 TTTGGTAGACGTGATCCTTGTATTATTGTTGGCATGCACAAAAAAACTCAACTAAAAACTCAAAG
456 CTTGATAGACGTGATCCTTGTATTATTGTTGGCATGCACAAAAAAACTCAACTAAAAACTCAAAG
* * **
18444325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGT
521 TGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGAC
18444390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
586 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* *
18444455 AGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
651 AGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGAC
18444520 CCCCCGATCGCCGAAACCCCAATCGTCGGGCCAATTTC
716 CCCCCGATCGCCGAAACCCCAATCGTCGGGCCAATTTC
*
18444558 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGTCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGG
* * ** **
18444623 CCAGAGGGGCGGGATGTGCAAACTGGGGATCGGTCGGG-CCCCTCTCTGTGTGATAT-C-GATCC
66 CCACAGGGGCGGGATGCGCAAACCAGGGATCGGTCGGGTCCCC-CTCTACGTG-T-TGCTGATCC
*
18444685 TGCAGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
128 TGCAGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * ** *
18444750 CTGACGGAACGAGCGGGCGGGTGGGCGGGTGGGCACTACATCGGCCAGAGAGACGGGATGCGCAA
193 CCGACGAAACGAGCGACCGGATGGGCGGCCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
* * *
18444815 GCCGTGGATCAATA-GGTGGTAGGTGGGTTTAGGCCACATCTTCATATTTCTACGTGCCAATGCC
258 ACCGTGGATCAATAGGGTGGGAGGTGAGTTTAGG-CACATCTTCATATTT-T---T----ATGCC
* * *
18444879 ATTTTATGGCTGTGAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTAAT-GTAAGACG
314 ------T---TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGGTTAATGGTAAGACG
* * * *
18444943 GCTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTGGAGATTTTTTTAAAAT-TTTT
370 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTGCA-AATTTTTTAAAATGTTTT
* *
18445007 CAAAA-GAGTTTTGGGCCCCAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
434 CAAAAGGA-TTTTGGGCACCAAACTTGATAGACGTGATCCTTGTATTATTGTTGGCATGCACAAA
** * *
18445071 AAAGTTCAGCTAGAAACTCGAAA-TGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATT
498 AAAACTCAACTAAAAACTC-AAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATT
18445135 TCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
562 TCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18445200 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
627 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCACAC
* * *
18445265 ATTATGTGCGCACACCCCCTAGCCCCCCCGATCG
692 ATCATGTGCGCACACCCCCCAGACCCCCCGATCG
18445299 ATGGAACCCT
Statistics
Matches: 654, Mismatches: 63, Indels: 32
0.87 0.08 0.04
Matches are distributed among these distances:
752 21 0.03
753 247 0.38
754 3 0.00
755 1 0.00
757 1 0.00
761 4 0.01
767 1 0.00
768 2 0.00
769 317 0.48
770 57 0.09
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (753 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGG
CCACAGGGGCGGGATGCGCAAACCAGGGATCGGTCGGGTCCCCCTCTACGTGTTGCTGATCCTGC
AGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGACCGGATGGGCGGCCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAACC
GTGGATCAATAGGGTGGGAGGTGAGTTTAGGCACATCTTCATATTTTTATGCCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGGTTAATGGTAAGACGACTCGTTTTCTATTTTTCACG
ATTTTTGAAACTTTTTACGGTTGCAAATTTTTTAAAATGTTTTCAAAAGGATTTTGGGCACCAAA
CTTGATAGACGTGATCCTTGTATTATTGTTGGCATGCACAAAAAAACTCAACTAAAAACTCAAAG
TGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGAC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGAC
CCCCCGATCGCCGAAACCCCAATCGTCGGGCCAATTTC
Found at i:18445458 original size:26 final size:26
Alignment explanation
Indices: 18445429--18445481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18445419 CCGGTCCGAT
*
18445429 CTTAGGCTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
18445455 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
18445481 C
1 C
18445482 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:18448158 original size:26 final size:26
Alignment explanation
Indices: 18448129--18448179 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18448119 CCAGTCCGAT
*
18448129 CTTAGATTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
18448155 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18448180 GCCTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:18449933 original size:26 final size:26
Alignment explanation
Indices: 18449897--18449949 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18449887 CCTATCCGAT
18449897 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
18449923 CTTAGACTGGGAATGAATTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18449949 C
1 C
18449950 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18450856 original size:27 final size:26
Alignment explanation
Indices: 18450808--18450861 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 26
18450798 CGGTCTGACT
18450808 CTTAGACTGGAATGAACTTCCGTCATG
1 CTTAGACTGGAATGAACTTCCGT-ATG
18450835 CTTAGACTGGGAATGAAC-TCCGTATG
1 CTTAGACT-GGAATGAACTTCCGTATG
18450861 C
1 C
18450862 CTAAGCAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 4 0.15
27 13 0.50
28 9 0.35
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAATGAACTTCCGTATG
Found at i:18452616 original size:26 final size:26
Alignment explanation
Indices: 18452580--18452632 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18452570 CCGGTCCAAT
* *
18452580 CTTAGACTGGGAGTGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCATATG
*
18452606 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
18452632 C
1 C
18452633 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:18453459 original size:897 final size:896
Alignment explanation
Indices: 18444558--18459250 Score: 15459
Period size: 903 Copynumber: 16.3 Consensus size: 896
18444548 GGCCAATTTC
* * *
18444558 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGTCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * ** * **
18444623 CCAGAGGGGCGGGATGTGCAAACTGGGGATCGGTCGGG-CCCCTCTCTGTGTGATATCGATCCTG
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC-CTCTACGTGCTGCCGATCCTG
* * ** ** *
18444687 CAGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
130 CTGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ***
18444752 GACGGAACGAGCGGGCGGGTGGGCGGGTGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGC
195 GACGAAACGAGCGGGC----GGGC----GGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
18444817 CGTGGATCAATA-GGTGGTAGGTGGGTTTAGGCCACATCTTCATATTTCTACGTGCCAATGCCA-
252 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-CACATCTTCATATTTCTGCATGCCAATGCCAT
* * * *
18444880 TTTTATGGC-TGTGAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTAAT-GTAAGACG
316 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
18444943 GCTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT-GGAGATTTTTTTAAAA-TTTT
381 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGG-GA-TTTTTTAAAATTTTT
* * *
18445006 TC-AAAAGAGTTTTGGGCCCCAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
444 TCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
18445070 AAAAGTTCAGCTAGAAACTCGAAATGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATT
508 AAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18445135 TCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
573 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18445200 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
638 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * *
18445265 ATTATGTGCGCACA-CCCCCTAGCCCCCCCGATCGAT-GGAACCCTAATGCCGTCGGTCAGGTTC
703 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG-TCGGAACCCCAATTCCGCCGGTCAGGTTC
* * ** * * *
18445328 TCCCGAGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAACTCATGCCCGAGCC
767 TCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCC
* * * * * *
18445393 CAGCATGTGCTGCCATC-ACCTTCGATCCGGTCCGATCTTAGGCTGGGAACGAACTCCGTATGCT
832 CAGCATGTGCTGCC-GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCT
18445457 T
896 T
* * * *
18445458 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGTCGCTCAGCCAG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* ** * * *
18445523 CTAGAAAGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACATGTTGCCGATCCTGC
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * ** * *
18445588 TACTGCAACCCTCACTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCG
131 TGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * ** *
18445653 ACGAAACAAGCGGGCGGGCGGTCGGGAGGGCACTACGTTGGCCAGAGACACGGGATGCGCAAGCC
196 ACGAAACGAGCGGGC--G-GG-C----GGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
18445718 GTGGACCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
253 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
18445783 TTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
318 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** *
18445848 TCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGA
383 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
18445913 AAGGAGTTTTGGCCCCAAACTTGTTAGACCTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAA
448 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
18445978 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG-CCTATTTGAAAAAAGTGTCCCCATTTTAG
513 TTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACC-ATTTGAAAAAAGTGTCCCCATTTCAG
* * * * *
18446042 ACACTTTAATGGCTACTGGTAGCAAACCTGCAAAATCTCAAAGGCTGCTTTCAGGGGATGTGAG-
577 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTTTAAGGGGGTGTGAGT
* * *
18446106 TCT-GAGGTTTGATGAGGCATA-GGGGCCAATAATAAGGGCCCAAGTACCAGCAACCCATCGTAC
641 TCTCAAGGTTTGATGAGGGATAGGGGGCCAAT-ATAAGGG-CCAAGTACCAGC-ACCCATCGCAC
** * * * * * * * *
18446169 ATCATGTGCTTACACCCCCCAGGGCCCCCTGATTGCCGGAACCCTAA-TGCGCCGGTCACGTTCT
703 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTCAGGTTCT
* * *
18446233 CAC-GCGATGCGTCCGACGATGGTGCCCAC-AGCGAAGAAAAATACG-GGCAGCAGCACA-GC-C
768 C-CGGTGATGC-TCCGACGATGGTGCCC-CGA-TGAAGAAAAAT--GTGGCACCAGCACATGCTC
* * * * * * **
18446293 AAGCCCCAGAACTATGCTTGTCACAA-CCTCGATCCGGTCTGATCTTAAGACTGGGAATTGAACT
827 GAG-CCCAGCA-TGTGC-TGCCGCAACCCTCGGTCCGGTCCAATCTT-AGACTGGGAA-TGAACT
*
18446357 CTGTATGCTT
887 CCGTATGCTT
* * * *
18446367 A-ATTGGGAATGAACTCCCGTA-ACCTAAGTCAACCCACGAAACGAGTGTGCGGGAGCAT-AGCC
1 AGACTGGGAATGAACT-CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC-TCAGCC
* * * ** *
18446429 GGCCAGA-GGGCGGGATGCACAAGCCGAGGATCGATCGGGTCCCCCTCTATTTGCTGTCGATCCT
64 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCT
** * * * ** * *
18446493 GCTATCACAACCCTCAGT-CTGATCTAATCTTAGACCGAGAATGAACTCCGTATGCCTAAGCCAA
129 GCTGCCGCAACCCTCAATCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18446557 CCGACGAAAAGAGCGTACGGGCGGGCGGGCACTATGCCGGCCAGAGAGACAGGATGCGCAAGCCG
193 CCGACGAAACGA--G--CGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
18446622 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCATTTT
254 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
18446687 TATGGCTTGTAAATTCATACAACGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
319 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * *
18446752 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTCAAAATTTTTTGGGA
384 CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * **
18446817 AGGTGTTTTTTGTTCACATGCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCAC
449 AGGAG--TTTTG-GC-C---C-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* ** *
18446882 AAAAAAATTCAGCTAAAAATTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCA
506 AAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
18446947 TTTCAGATACTTCAATGGCTACTGGCAGCACACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
571 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * * *
18447012 TGAGTTCTCGAGGTTT-ACAGAGGAATAAGGGGCCAATATAA-AGCCATGTACC-GACACCCATC
636 TGAGTTCTCAAGGTTTGA-TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATC
** * * * *
18447074 GCACATCATGTGCTTACA-CCCCCCGGCCACCTCGATCGTCGGAACCCCAATGCCACCGGTCAGG
699 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTCAGG
* * *
18447138 TTCTCC---G--G-T-----GATGGTGCCCCGACGAAGAAAAATGGGGCACCAGCACATGCCCGA
764 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGA
* * * * *
18447192 GCCCAGCAGGTGCTGTCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
829 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
18447257 CTT
894 CTT
* ** * * * *
18447260 AGGCT-GGATATGAACTCTATATGCCTAAGTCAACCCACGAAACCAGCGTACAGGCGCTCAGCTG
1 AGACTGGGA-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * **
18447324 GCCAGAGGGGTGGGATGCACAAGTCGGGGATC-GACTGGGCCCCCCTCTGTGTGCTGCCGATCCT
65 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGCCGATCCT
* * ** * * * * *
18447388 GCTGCCACATCCCTCGGT-CTGATCCAATCTTAGATTGGGAATGAACTACGTATGCCTAAGCCAT
129 GCTGCCGCAACCCTCAATCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18447452 CCGACGAAACAAGCGGGCGGGCGGGCAATACGTCGGCCAGAGAGACGGGATGCGCAAGCCTTGGA
193 CCGACGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
18447517 TCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGTCATTTTTATG
258 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
18447582 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
323 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
18447647 TTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
388 TTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
*
18447712 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCT-TTTTTGTTGGCATGCACAAAAAAATTCA
453 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TATTTTTGTTGGCATGCACAAAAAAATTCA
* *
18447776 GCTAACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
517 GCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * ** *
18447841 TTAATGGCTACTGGCAGTATACCTGTAAAATCTCAAATGCTCTTTAAGGTTGTGTGAGTTCTCGA
582 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
*
18447906 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGC
647 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
18447971 GCACACCCCCCCTTGGCCCCCCCGATAGCCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGGCGA
712 GCACACCCCCCC--GGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTCAGGTTCTCCGGTGA
* * * * ** *
18448036 TGCTCTGACGATGGTGCGCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTGGTATGT
775 TGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGT
* * * *
18448101 GCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATCCTT
840 GCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
18448158 AGACTGGGAATGAACTCCGTATGCCTAAGTGAACCAATGAAACGAGTGTGCGGGCGCTCAGCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * *
18448223 CCAGAGGGGTGGAATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCCGCTGATCCTAC
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * ** * * * * *
18448288 TACCGTAACCCTCGGT-CTGATCCAATCTTAGACCGGGAATGAACTTCGTATGCCTAAGCGAACC
131 TGCCGCAACCCTCAATCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18448352 GACAAAACGAGCGGACGGGCGGGCAGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCGAGC
195 GACGAAACGA---G-CGGGCGGGC----GGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
18448417 CGTGGATCG--A---TCG-A-GT-GG-TT-GG--------------TGTG--TGCCAATGCCATT
252 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
18448456 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAATACGA
317 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * * *
18448521 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTCTACGGTTTGAGATTTTTTAAAATTTTTTTG
382 CTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* *
18448586 GAAGGAGTTTTAGCCCCAACCTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAA
447 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* **
18448650 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAG
512 ATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
18448715 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
577 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
18448779 CTCAAGGTTTGATGAGGGATAGCGAGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATTA
642 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
18448844 TGTGCGCACA-CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCTGACGGTTAGGTTCTCCGG
707 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTCAGGTTCTCCGG
* * * * * * *
18448908 AGATGCTGCGATGATGGTGCCTCGGTGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCA
772 TGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCA
* * * * *
18448973 TGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATACGCTT
837 TGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * ** *
18449033 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCAGAGCCGA
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * *
18449098 CCAGAGGGGTGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGAT-CTCG
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCT-G
* * ** * * *
18449162 CTACCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
130 CTGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
18449227 GACGAAACGAGCGGAAGGGCGGGCGGGCGGGC-ACTGCGCTGGCCAGAGAGACGGGAGGCGCAAG
195 GACGAAACGAGC----GGGCGGGCGGGC--ACTA-TGC-C-GGCCAGAGAGACGGGATGCGCAAG
* * * * * *
18449291 CGGTTGATCGATAGGGTAGTAGGTGGTTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
251 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
18449356 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
316 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
18449421 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTATAATTTTTTT
381 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
*
18449486 GGAAGGAGTTTTGGCCCCAAACTAT--TAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAA
446 GGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18449549 AAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTC
510 AAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18449614 AGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAG
575 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
18449679 TTCTCGAGGTTTGATGAGGGATAGGAGGCTAATATAAGGGCCAAGTACCAACACCCATCGCACAT
640 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18449744 CATGTGCGCACACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCACCGGTCA-------
705 CATGTGCGCACAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTCAGGTTCTC
* ** ** *
18449802 -AGT--T-CTCCGACGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
769 CGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCA
* ** * *
18449863 GCATGTGCTGTCGCAACCCTCGGTCCTATCCGATCTTAGACTGGGAATGAACTTCGTATGCTT
834 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
* ** * *
18449926 AGACTGGGAATGAATTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGTCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * ** *
18449991 CCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTTTGCATGCTATCGATCTTGC
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* ** * * *
18450056 TGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCG
131 TGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* ** * *
18450121 ACGAAACGAGTGAGCGGACGGATGGGCGGGCACTATGCCGGCTGGAGAGAC-AGATGCGTAAGCC
196 ACGAAAC----GAGC-G--GG-CGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * **
18450185 GAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGGGTGCCAATGCCATTT
253 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
18450250 TTCTGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
318 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** *
18450315 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGA
383 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
*
18450380 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA-AAAATAA
448 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AA
* * * *
18450444 CTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTTGACCATTTG-AAAAAGTGTCCCAATTTCA
512 ATTCAGCTAAAAACTCGAAATGTACAAGATTTTG-TGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
18450508 GACACTTTAATAGCTACTGGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGCGGTTGTGCG
576 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGGTGTGAG
** * * *
18450572 TTCCTTGAGGTTTGATGAGGGATAAGAGGCCAGATATAAGTGCCAAGTACCAGCACCCAGTCGCA
640 TT-CTCAAGGTTTGATGAGGGATAGGGGGCCA-ATATAAGGGCCAAGTACCAGCACCCA-TCGCA
* ** * * * * *
18450637 CATTCATGTGGCGCACA--CCCCCGACCCCCTTGATCATTGGAACCCC-ATGCCGTCGGTCAACA
702 CA-TCATGT-GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTC-A-G
* * * **
18450699 GTTCTCCGG-GATGGCT-CGACGATGGCTGCACC-AGCGAAGGAAAAT-AAGCACCAGCACATGC
763 GTTCTCCGGTGAT-GCTCCGACGATGG-TGCCCCGA-TGAAGAAAAATGTGGCACCAGCACATGC
* * * * *
18450760 TCGAAGGCCAGCATTGTGCTGCTGCCAACTCCGCGGTCCGGTCTGACTCTTAGACT-GGAATGAA
825 TCG-AGCCCAGCA-TGTGCTGCCG-CAAC-CCTCGGTCCGGTC-CAATCTTAGACTGGGAATGAA
18450824 CTTCCGTCATGCTT
885 C-TCCGT-ATGCTT
* * * *
18450838 AGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCACGGAACGAGCGT-AGTGCGCTCAGCCAG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* *** ** *
18450901 CCAGAGGGGCGGGATGTGCAATTAGGGGATC-GTCTGGAGGTACAAACCTCTACGTG-T-AC-AT
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC--G-GGT-C-CCCCTCTACGTGCTGCCGAT
* ** ** * *
18450962 CTTGCTGCCGCAACCCTCGGTCTGGTCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
126 CCTGCTGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18451027 AACCGATGAAACGAGCGAGTGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGAATGCGC
191 AACCGACGAAACGAGC----GGGC--G--GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCG-
* *
18451092 CAA-CCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
247 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
18451156 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAA
312 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
** * *
18451221 GACGACTCGTTTTCTATTTTTCCCGATTTTCAAAACTTTTTGCCGTTCGGGATTTTTTAAAATTT
377 GACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* * * *
18451286 TTTCGGAAGGAGTGTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTTTTGGCATTCACA
442 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
18451351 AAAAACTTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCAT
507 AAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
18451416 TTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
572 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
18451481 GAATTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
637 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
** ** * * *
18451546 CATCATGTGCGCACA-CCCCCCGG-CTTCCCGATCACCGAAACCCCAATGCCGCCAGTCAGGTTC
702 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTCAGGTTC
* ** *
18451609 TCCGGTGATGCTCCGATGATGGTGCCCCGACAAAGAAAAATATGGCACC-GACACATGC-CTGAG
767 TCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAG-CACATGCTC-GAG
* *
18451672 CCCAGCATGTGCTGTCGTAA-CC-C--T-CGG--------T---CT--G---G---TCCG-AT-C
830 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
18451711 TT
895 TT
* * * * * * *
18451713 AGACTGGGAATGAACTCCATATGCCAAAGTCAACCCATGAAACGAGCGTACGGGCACCCAACCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * *
18451778 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCACTCTACGTGCTACCAATTCGGC
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * ** * * *
18451843 TGCTGCATCCCTCAGTCTGGTCTGATCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCG
131 TGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* ** * * *
18451908 ACGAAACGAGCTGGCGGGCGGGCACTATGCTAGCCAGAGAGACAGGATGCACAAGCTGTGGATCG
196 ACGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
** *
18451973 ATAGGGCAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
261 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
*
18452038 TGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
326 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
18452103 TATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTCGGAAGGAGTT
391 TATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
18452168 TTGGCCCCAAACTTGGGAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
456 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
18452233 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAA
521 AAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* **
18452298 TGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
586 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* * * * *
18452363 TGATGAGGGATAGGAGG-CAATATAAGGGCCAAATACCAGCACCCGTCACACATCATGTGTGCAC
651 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** ** *
18452427 ACCCACCCCGGCCCCCCCGATCGTCGGAACCCCAAAGCAACCGGTCAGGTTCTTCGGTGATGCTC
716 ACCC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTCAGGTTCTCCGGTGATGCTC
* * * * * * *
18452492 C-AGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGAAAGTGCTA
780 CGA-CGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG
* * *
18452556 CCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAGTGAACCCCGTATGCTT
844 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
18452609 AGACTGGGAATGAACTCCATATGCCTAAGTTAACCCACGAAATGAGCGTGTGGGTGCTCAGCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * *
18452674 CCAGAGGGTCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCTCCTCTGCGTGCTGCCGATCCTAC
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * ** * * * *
18452739 TACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATTTGCCTAAACCAACCA
131 TGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *
18452804 ACAAAATGAGCGGGCAGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
196 ACGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
18452869 ATAGGATGGTAGGTGGGTTTAGGTACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCT
261 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
18452934 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTC
326 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * ** *
18452999 TATTTTTCACGATTTACGAAACCTTTTGCGGTTCCAGATTTTTTTAAAATTTTTTC-AAAGGGAG
391 TATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAA-GGAG
*
18453063 TTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
454 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
18453128 TAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
519 TAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* **
18453193 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTTGAGG
584 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
*
18453258 TTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
649 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
18453323 ACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCACCGGTCAGGTTC-CCTAGCGATGC
714 ACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTCAGGTTCTCC-GGTGATGC
* * * *
18453387 TCCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGTGCCCAGCATGTGCT
778 TCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
*
18453452 GCCGTAA-CC-C--T-CGG-----TC-----C--GG--T---CT--G-AT-CTT
843 GCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * **
18453480 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAATGAACGTGAGGGCGCTCAGTAGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * *
18453545 CCAGAGGGGCGGGATACGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCTTGC
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * * * * *
18453610 TACTGCAACCTTCATTCCAGTTCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTG
131 TGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
18453675 ACGAAACGAGCGGACGGGCAAACGGGCGGGCACTACGTCGACTAGAGAGACCGGATGCGCAAGTC
196 ACGAAACGA---G-CGGG----CGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * *
18453740 GTGGATCGATAGGCTGGTTGGTGGGTTTAGCCACATCTTCATATTTCTTCGTGCCAATGCCATTT
253 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
18453805 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGATGTTTCATGGCAAGAGGAC
318 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** *
18453870 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTTTGGTTCGGGATTTTTTAAAATGCTTTT-G
383 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT-TTTTTCG
* * * * * * * *** *
18453934 GAAGGAGTTTTTGCCTCGAACTTGGTAGACATGAACCTTTTGTTTTTGTTGTTGTGCACAAAACA
447 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18453999 ATTCAGCCAAAAACTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
512 ATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18454064 ACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
577 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
18454129 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCT
642 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
18454194 TGTACGCACA-CCCCCCGACCCCCCCGATCGTCGGAACCCC-ATTGCCGCCGGTCGGGTTCTCCG
707 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATT-CCGCCGGTCAGGTTCTCCG
* ** * *
18454257 GTGATACTCCGGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTTGAGCACAGC
771 GTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGC
* * * *
18454322 ATGTGCTGCGGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTT
836 ATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
** * * * *
18454383 AGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCCTGTGGGCGCTCAGCTGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * ** *
18454448 CCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCACTGCGTGCTATCGATCCTAC
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * * *
18454513 TGCTGCAACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAATTTCGTATGCCTAAGCCAACCG
131 TGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
18454578 ACGAAATGAGCGGGCGGGTAGGCGGGCACTATGCCGACCAAAGGGATGGGATGCGCAAGTCGTGG
196 ACGAAACGAGCGGGC--G--GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
18454643 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAC
257 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * *
18454708 GGCTTGTAAATTCAAACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGACGAGACGACTCGT
322 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
18454773 TTTCTATTTTTCAAGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCTGAAGG
387 TTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
**** * * * *** **
18454838 AGTTTTGGCCCCAAACTTGGTATTTTTGCATGCCAATGCCATTTTTATT--CTATTTTTC-AGGA
452 AGTTTTGGCCCCAAACTTGGTAGACGTG-AT-CC-TTG-TATTTTTGTTGGC-A-TGCACAAAAA
* *** ** * * * * ** * ** *
18454900 TATTCA---AAACTTTTTACAGGT-CAGGATTTT-TTAAAATTTTTTTGGAAGGAGTTTTGGCCC
511 AATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCA----TTTGAAAAAAG---TGTCCC
* *** ** ** *
18454960 CAAACTTGGT-AGACGTGA-TCCTAGTATTTTTGTTGGCATGCACAAAAAAGTTTAGCTAAAAAC
569 C--A-TT--TCAGAC---ACT-TTA--ATGGCTACTGGCA-G--C---AAA-CCT-G-TAAAATC
* * *** ***** * * * * * *
18455023 TCAAGGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCA-TTTTAGACACTTTAATGGC
614 TCAA-ATG--C-----TCT-TTA--AGGGGGTGTGAGT-TCTCAAGGTTT-G--A---TGAGGGA
** * *** * * ****** * ** * **
18455087 TACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTG-
661 TA--GGGGGCCAA--TATAAGGGC-CAAGTAC-C----AGCACCCAT-CGCACATC-ATGTGCGC
* ****** *** *** * * * * **
18455150 ATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-A-T-CGCAC-ATCAAGTGCG
714 A-CACCCCCCCGGCCCCCCCGAT---CGTC--GGA--A-C-CCCAATTCCGC-CGGTC-AG-GTT
* ****** * ** * *
18455210 CACACCCCCCCGACCCCCCCGATTGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGG
766 CTC-CGGTGATG-CTCCGACGATGGT-G---CCCCGAT----------------------GA---
* * *
18455275 TGCCCAGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTT
800 -----A-----GAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * *
18455340 GGTCTGGTTCGATCTTAGACTGGGAATGTACTCCGTATGTTT
855 GGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
18455382 AGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * *
18455447 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGT-CCCCT-TA-----TGCAGATCTTGC
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * *
18455505 TGCCGCAACCCTTC-GTCTAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTCAGCCAACC
131 TGCCGCAACCC-TCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
18455569 GATGAAACGAGCGGGCGGGCGGGCGGGCGGGCGGGTCGGCACTACATCGGCCAGAGAGACGGGAT
195 GACGAAACGA----GCGGGCGGGCGGGC--AC---T----A-TGC--CGGCCAGAGAGACGGGAT
* * ** *
18455634 GCGCAAGCCGTGGATCGATTGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGTGTACCA
244 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
18455699 ATGCCA--TTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
309 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
18455762 CAAGACGACTCGTTTTCTATTTTTCAGGATTTTTC-AAACTTTTTGTGGTTCGGGATTTTTTAAA
374 CAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAA
* * * *
18455826 ATTTTTTCGGAAAGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTCTTTTTTTTGGCATG
438 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
18455891 CATAAAAAAATTTAGCTAAAAACTC-AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
503 CACAAAAAAATTCAGCTAAAAACTCGAAA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
18455955 CCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
567 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * *
18456020 GGTGTGAGTTCTCAAGGTTTGATGTGGGATACGAGGCAAATATAAGGGCCAAGTACCAGCACCCA
632 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
** ** * * * * *
18456085 TCGCACAAGATGTGCGCACA-CCCCCCGGTGCCCCCGATCGCCAGAACCCCACTGCTGCCGGTCA
697 TCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTCA
* * * * *
18456149 GGTTCTCCGGCGATGCTCCGACGATGGTGCGCCGACGAAGAAAAATGTGACACCAACACATGCTC
762 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTC
* * * * * *
18456214 AAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATGTTAGACTAGGAATGAACTTCGTA
827 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTA
18456279 TGCTT
892 TGCTT
* * * * * *
18456284 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-AAAACAAACGTGCGGGCACTGAACCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * *
18456348 CCAGAGGGGCGGGATCCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTACGTGCTACCGATCCTTC
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * *
18456413 TGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
131 TGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * ** *
18456478 ATGAAATGAGCGAGTGGACGGGCGGGCGGGTACCTCGTCGGCCAGAGAGACGGGATGCGCAAGCC
196 ACGAAACGAGC--G-GG-CGGGCGGGC-ACTA--T-GCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
18456543 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTT
253 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
18456608 TTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGACGTTTCATGGCAAGATGAC
318 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
18456673 TCGTTTTTTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
383 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
18456738 AAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGTCATGCGCAAAAAAA
448 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
18456803 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCAATTTCAGA
513 TTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18456867 CACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
578 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
18456932 TCGAGGTTTGGTAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCAT
643 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
18456997 GTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGT
708 GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTCAGGTTCTCCGGT
* * * ** *
18457062 GATGCTTCGACGATGGTGACCCGACGAAGAAAAATGCCGCACCAGCACATGTTCGAGCCCAGCAT
773 GATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCAT
*
18457127 GTGCT-CCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTT
838 GTGCTGCC-GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
* ** * * *
18457186 AGACTGGGAACGAACTCTATATACCTAAGTCAACCCACGGAACGAGCGTGCGGGCACTCAGCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * ** * *
18457251 CCAGAGGGGCGAGATGTGCAAGCCGGGTATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGT
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
*
18457316 TGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCG
131 TGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *
18457381 ATGAAACCAGCGGGCTAGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
196 ACG-AA--A-C--G--AGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18457446 GTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATTCCATTT
253 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
18457511 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGATGAC
318 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
18457576 TCGTTTTCTATTTTTCATGATTTTTGAAACGTTTTT-TGGTTTGGGATTTTTTAAAATTTTTTCG
383 TCGTTTTCTATTTTTCATGATTTTCGAAAC-TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* **
18457640 GAAGGATTTTTGGCCCCAAACTTCTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
447 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * * *
18457705 ATTCGGCTAAAAATTCGAAGTGTACAAGATTTTGCGACAATTTGAAAAAAGTGTCCCCATTTCAA
512 ATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18457770 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGTGCTGTGAGTT
577 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
18457835 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
642 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*** * * *
18457900 TGTGCG-TGTCCCCCCCGGCCCCCTCGATCG-CTAGAAGCCCAATGT-CGCCGGTCAGGTTCTCC
707 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAAT-TCCGCCGGTCAGGTTCTCC
* * * * *
18457962 GG-GATGATCCGACGACGGTGACTCGGTGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAG
770 GGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAG
18458026 CATGTGCTGCCGCAACCCT---T--GG--------T---C------TG-A-TCCG-AT-CTT
835 CATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
18458062 AGAATGGGAATGAACTCCGTATGCCTACGTCAACCCATGAAATGAGCGTGCAGGCGCTCAGCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
18458127 CCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATTGGGTCCCCCTCTGCGTGCTGCTGATCATGC
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * *
18458192 TGCCACAACCTTCGATCC-GATCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATC
131 TGCCGCAACCCTCAATCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18458256 GACGAAATGAGCGGGCGGGTGGGCGGGCGAGCACTACGTCGGCCAGAGAGACCGGATGCGCAAGC
195 GACGAAACGAGCGGGC----GGGC--G-G-GCACTATGCCGGCCAGAGAGACGGGATGCGCAAGC
*
18458321 CGTGGATCGATAGGGTGGTAGGTGTGTTT-GGCACAAT-TTCATATTTCTGCATGCCAATGCCAT
252 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC-ATCTTCATATTTCTGCATGCCAATGCCAT
* * * * *
18458384 TTTTATGGCTTGTAAATTCATAAAACGGTCCATTAAGCCTTCACGTGCAGTTTCATGGCAAGACC
316 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * *
18458449 ACTTGTTTTCTATTTTTCACGATTTTCAAAATTTTTTGGGGTTCGGGATTTTTTTGAAATTTTTT
381 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTT
* * *
18458514 CGAAAGGAGTTTTGGACCCAAAC-T--T--ACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
445 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
18458574 AAATTCAGCTACAAATTC-AAAGTGTGCAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTT
510 AAATTCAGCTAAAAACTCGAAA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18458638 CAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGA
574 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
18458703 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
639 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * **
18458768 TCATGTGCGCACA--CCCCCAGCCCCCCTGATCGTCAAAACCCC-ATTGCCGCCGGTCAGGTTCT
704 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATT-CCGCCGGTCAGGTTCT
* * * * * *
18458830 CCGGTGATGCTCCGACGATGGTGACCCGACGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCAC
768 CCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCC
* * * ** * *
18458895 AGCATGTGCTGCCCCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGATT
833 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
* * ** * * *
18458959 AGACTGGGAATGAACTCTGTATGCCTAATTCAACTGACGAAACGAGCGTGCGGGTGCTCAACCGA
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * *
18459024 CTAGAGGGGCGGGATGCGTAAGCCGGGGATTGGTCGTGTCCCCCTCTGCATGCTGCCGATCTTGC
66 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * * *
18459089 TACCGTAACCCTCGATCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
131 TGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
18459154 ACGAAACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGTGCAAGCCGTGG
196 ACGAAACGAGCGGGC----GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
18459219 ATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
257 ATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
18459251 GAAATTTTTT
Statistics
Matches: 11689, Mismatches: 1584, Indels: 1047
0.82 0.11 0.07
Matches are distributed among these distances:
867 47 0.00
868 431 0.04
869 9 0.00
870 143 0.01
871 475 0.04
872 12 0.00
873 14 0.00
874 14 0.00
875 522 0.04
876 364 0.03
877 155 0.01
878 348 0.03
879 333 0.03
880 179 0.02
881 2 0.00
882 9 0.00
883 196 0.02
884 38 0.00
885 10 0.00
886 5 0.00
887 46 0.00
888 2 0.00
889 7 0.00
890 1 0.00
891 232 0.02
892 236 0.02
893 498 0.04
894 128 0.01
895 202 0.02
896 413 0.04
897 562 0.05
898 338 0.03
899 256 0.02
900 362 0.03
901 538 0.05
902 780 0.07
903 1128 0.10
904 260 0.02
905 58 0.00
906 132 0.01
907 238 0.02
908 211 0.02
909 79 0.01
910 108 0.01
911 320 0.03
912 387 0.03
913 47 0.00
914 8 0.00
915 2 0.00
916 1 0.00
919 3 0.00
920 1 0.00
922 10 0.00
923 2 0.00
925 1 0.00
930 2 0.00
931 3 0.00
933 8 0.00
934 5 0.00
936 1 0.00
937 4 0.00
939 6 0.00
940 1 0.00
941 15 0.00
942 6 0.00
943 10 0.00
944 9 0.00
945 5 0.00
946 1 0.00
948 3 0.00
949 6 0.00
950 11 0.00
951 14 0.00
952 4 0.00
953 2 0.00
955 2 0.00
956 6 0.00
957 8 0.00
958 11 0.00
959 5 0.00
960 14 0.00
961 1 0.00
962 5 0.00
964 6 0.00
965 1 0.00
967 5 0.00
968 8 0.00
970 3 0.00
971 2 0.00
976 1 0.00
978 2 0.00
979 10 0.00
980 1 0.00
981 1 0.00
982 3 0.00
985 1 0.00
986 2 0.00
987 1 0.00
988 7 0.00
990 3 0.00
991 1 0.00
992 78 0.01
993 6 0.00
994 5 0.00
995 1 0.00
996 6 0.00
997 8 0.00
998 12 0.00
999 185 0.02
1000 11 0.00
1001 5 0.00
1002 149 0.01
1003 12 0.00
1004 82 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
TGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCCGGTCAGGTTCTCCGGTGATGCTCC
GACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC
GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT
Found at i:18454392 original size:26 final size:26
Alignment explanation
Indices: 18454354--18454406 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18454344 CCGATCCGAT
** *
18454354 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
18454380 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
18454406 C
1 C
18454407 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:18455390 original size:26 final size:26
Alignment explanation
Indices: 18455354--18455404 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18455344 TGGTTCGATC
*
18455354 TTAGACTGGGAATGTACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
18455380 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
18455405 CCAAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:18455588 original size:4 final size:4
Alignment explanation
Indices: 18455579--18455603 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
18455569 GATGAAACGA
18455579 GCGG GCGG GCGG GCGG GCGG GCGG G
1 GCGG GCGG GCGG GCGG GCGG GCGG G
18455604 TCGGCACTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.76, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:18456293 original size:26 final size:26
Alignment explanation
Indices: 18456249--18456307 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
18456239 CTCGGTCCGA
18456249 TCCG-ATG-TTAGACTAGGAATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
* *
18456273 TTCGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
18456299 TCCGTATGC
1 TCCGTATGC
18456308 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 24 0.80
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTAGGAATGAAC
Found at i:18456752 original size:902 final size:900
Alignment explanation
Indices: 18454885--18459250 Score: 5757
Period size: 902 Copynumber: 4.9 Consensus size: 900
18454875 GCCATTTTTA
* * * * *
18454885 TTCTATTTTTCAGGATATTCAAAACTTTTTACAGG-TCAGGATTTTTTAAAATTTTTTTGGAAGG
1 TTCTATTTTTCAGGATTTTTAAAACTTTTTGC-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
18454949 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTAGTATTTTTGTTGGCATGCACAAAAAAGTTTA
65 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
18455014 GCTAAAAACTCAAGGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
130 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
18455079 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
195 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
*
18455144 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGC
260 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
18455209 GCACACCCCCCCGACCCCCCCGATTGTC-GAAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-
325 GCACA-CCCCCCG-GCCCCCCGATCGTCAG-AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
18455269 --T-----GATGGTG-CCC-AGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
387 GCTCCGACGATGGTGACCCGA-CGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
* * * * * * * *
18455325 GCTGTCGCAACCCTTGGTCTGGTTCGATCTTAGACTGGGAATGTACTCCGTATGTTTAGACTGGG
451 GCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGG
* * *
18455390 AATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGG
516 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* *
18455455 GCGGGATGCGCAAGTCGGGGATCGATCGGGT-CCCCT-TA-----TGCAGAT-CTTGCTGCCGCA
581 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTT-CTGCCGCA
** * *
18455512 ACCCTTCGTCTAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTCAGCCAACCGATGAAAC
645 ACCC-TCGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
*
18455577 GAGCGGGCGGGCGGGCGGGCGGGCGGGTCGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGC
709 GA----GCGGGC-GGCGGGCGGGC--G--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
18455642 CGTGGATCGATTGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTG-TGTACCAATGCCA-
765 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT-TGCCAATGCCAT
*
18455705 -TTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
829 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
18455769 ACTCGTT
894 ACTCGTT
* * *
18455776 TTCTATTTTTCAGGATTTTTCAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGA
1 TTCTATTTTTCAGGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * * * *
18455841 GTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTCTTTTTTTTGGCATGCATAAAAAAATTTAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
18455906 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
131 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
18455971 TAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
* * * * **
18456036 GTTTGATGTGGGATACGAGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACAAGATGTGCG
261 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
18456101 CACACCCCCCGGTGCCCCCGATCGCCAGAACCCCACTGCTGCCGGTCAGGTTCTCCGGCGATGCT
326 CACACCCCCCGG-CCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
* * * *
18456166 CCGACGATGGTG-CGCCGACGAAGAAAAATGTGACACCAACACATGCTCAAGCCCAGCATGTGCT
390 CCGACGATGGTGAC-CCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
* *
18456230 GCCGCAACCCTCGGTCCGATCCGATGTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAAT
454 GCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * *
18456295 GAACTCCGTATGCCTAAGTCAACCCA-AAAACAAACGTGCGGGCACTGAACCGGCCAGAGGGGCG
519 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * *
18456359 GGATCCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTACGTGCTACCGATCCTTCTGTCGCAACCC
584 GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTTCTGCCGCAACCC
*
18456424 TCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGC
649 TC-GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC
* * *
18456489 GAGTGGACGGGCGGGCGGGTACCT-CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
713 GGGCGG-CGGGCGGGCGGGCA-CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
18456553 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTG
776 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTG
* * *
18456618 TGAATTCATACAATGGTCCCTTAAGCCTTCACGTGACGTTTCATGGCAAGATGACTCGTT
841 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
18456678 TTTTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
1 TTCTATTTTTCAGGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
18456743 GTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGTCATGCGCAAAAAAATTCAG
66 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
18456808 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCAATTTCAGACACTT
131 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
18456872 TAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
196 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
* * *
18456937 GTTTGGTAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCG
261 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
18457002 CACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGC
326 CACA-CCCCCCG-GCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * *
18457067 TTCGACGATGGTGACCCGACGAAGAAAAATGCCGCACCAGCACATGTTCGAGCCCAGCATGTGCT
389 TCCGACGATGGTGACCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
* * * *
18457132 -CCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAA
454 GCC-GCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAA
* ** * * *
18457196 CGAACTCTATATACCTAAGTCAACCCACGGAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGC
518 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * *
18457261 GAGATGTGCAAGCCGGGTATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGT-TGCCGCAAC
583 GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCT-TCTGCCGCAAC
* * * * *
18457325 CCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACCA
647 CCTC-GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA
* * *
18457390 GCGGGCTAGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
711 GCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
18457455 TTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATTCCATTTTTATGGCTT
775 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTT
* *
18457520 GTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGATGACTCGTT
840 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
18457581 TTCTATTTTTCATGATTTTTGAAACGTTTTT-TGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
1 TTCTATTTTTCAGGATTTTTAAAAC-TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* ** *
18457645 ATTTTTGGCCCCAAACTTCTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCG
65 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * * *
18457710 GCTAAAAATTCGAAGTGTACAAGATTTTGCGACAATTTGAAAAAAGTGTCCCCATTTCAAACACT
130 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
18457775 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGTGCTGTGAGTTCTCAA
195 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
*
18457840 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
260 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
** * *
18457905 GTGTC-CCCCCCGGCCCCCTCGATCG-CTAGAAGCCCAATGTCGCCGGTCAGGTTCTCCGG-GAT
325 G-CACACCCCCCGGCCCCC-CGATCGTC-AGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * * ** *
18457967 GATCCGACGACGGTGACTCGGTGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTG
387 GCTCCGACGATGGTGACCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTG
*
18458032 CTGCCGCAACCCT---T--G----G----T---C------TG-A-TCCG-AT-CTTAGAATGGGA
452 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
18458071 ATGAACTCCGTATGCCTACGTCAACCCATGAAATGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGG
517 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * *
18458136 CGGGATGCGCAAGCTGGGGATCGATTGGGTCCCCCTCTGCGTGCTGCTGATCATGCTGCCACAAC
582 CGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTTCTGCCGCAAC
* * * * * * *
18458201 CTTCGATCCGATCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGA
647 CCTCG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA
* * *
18458266 GCGGGCGGGTGGGCGGGCGAGCACTACGTCGGCCAGAGAGACCGGATGCGCAAGCCGTGGATCGA
711 GCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
18458331 TAGGGTGGTAGGTGTGTTT-GGCACAAT-TTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
775 TAGGGTGGTAGGTGGGTTTAGGCAC-ATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCT
* * * * * *
18458394 TGTAAATTCATAAAACGGTCCATTAAGCCTTCACGTGCAGTTTCATGGCAAGACCACTTGTT
839 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * *
18458456 TTCTATTTTTCACGATTTTCAAAATTTTTTGGGGTTCGGGATTTTTTTGAAATTTTTTCGAAAGG
1 TTCTATTTTTCAGGATTTTTAAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGG
* *
18458521 AGTTTTGGACCCAAAC-T--T--ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
65 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
18458581 GCTACAAATTCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACT
130 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
18458646 TTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAA
195 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
18458711 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
260 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
18458776 GCACA-CCCCCAGCCCCCCTGATCGTCAAAACCCCATTGCCGCCGGTCAGGTTCTCCGGTGATGC
325 GCACACCCCCCGGCCCCCC-GATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * *
18458840 TCCGACGATGGTGACCCGACGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCACAGCATGTGCT
389 TCCGACGATGGTGACCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
* * * *
18458905 GCCCCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGATTAGACTGGGAAT
454 GCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * ** * * * *
18458970 GAACTCTGTATGCCTAATTCAACTGACGAAACGAGCGTGCGGGTGCTCAACCGACTAGAGGGGCG
519 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * * * *
18459035 GGATGCGTAAGCCGGGGATTGGTCGTGTCCCCCTCTGCATGCTGCCGAT-CTTGCTACCGTAACC
584 GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTT-CTGCCGCAACC
* *
18459099 CTCGATCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
648 CTCG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
* * *
18459164 C--G-GGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGTGCAAGCCGTGGATCGATA
712 CGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
18459226 GGGTGGTAGGTGGGTTTAGGCACAT
777 GGGTGGTAGGTGGGTTTAGGCACAT
18459251 GAAATTTTTT
Statistics
Matches: 3049, Mismatches: 345, Indels: 160
0.86 0.10 0.05
Matches are distributed among these distances:
869 1 0.00
870 45 0.01
871 295 0.10
873 1 0.00
874 6 0.00
875 123 0.04
876 285 0.09
877 2 0.00
878 3 0.00
879 1 0.00
880 3 0.00
884 1 0.00
886 1 0.00
887 1 0.00
889 1 0.00
890 42 0.01
891 301 0.10
893 77 0.03
894 6 0.00
895 5 0.00
896 4 0.00
897 174 0.06
899 1 0.00
900 88 0.03
901 205 0.07
902 623 0.20
903 522 0.17
904 155 0.05
905 1 0.00
907 2 0.00
908 71 0.02
909 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
TTCTATTTTTCAGGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
CGACGATGGTGACCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
ATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTTCTGCCGCAACCCTC
GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGG
CGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
Found at i:18457186 original size:26 final size:26
Alignment explanation
Indices: 18457157--18457207 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18457147 CCGGTCCAAT
*
18457157 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
*
18457183 CTTAGACTGGGAACGAACTCTATAT
1 CTTAGACTGGGAACGAACTCCATAT
18457208 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:18458960 original size:26 final size:26
Alignment explanation
Indices: 18458931--18458981 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18458921 CGATCTGATC
18458931 TTAGACTAGGAATGAACTCCGTATGA
1 TTAGACTAGGAATGAACTCCGTATGA
* *
18458957 TTAGACTGGGAATGAACTCTGTATG
1 TTAGACTAGGAATGAACTCCGTATG
18458982 CCTAATTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGA
Found at i:18459710 original size:26 final size:26
Alignment explanation
Indices: 18459670--18459722 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18459660 CCTGTTCGAT
*
18459670 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
18459696 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18459722 C
1 C
18459723 CTATATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18459984 original size:751 final size:740
Alignment explanation
Indices: 18458503--18460001 Score: 2000
Period size: 740 Copynumber: 2.0 Consensus size: 740
18458493 GGGATTTTTT
18458503 TGAAATTTTTTCGAAAGGAGTTTTGGACCCAAACTTACATGATCCTTGTATTTTTGTTGGCATGC
1 TGAAATTTTTTCGAAAGGAGTTTTGGACCCAAACTTACATGATCCTTGTATTTTTGTTGGCATGC
* * *
18458568 ACAAAAAAATTCAGCTACAAATTCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAATTGTCCC
66 ACAAAAAAATTCAGCTAAAAATTCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTATCCC
*
18458633 CATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGG
131 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGG
18458698 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
196 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
18458763 GCACATCATGTGCGCACACCCCCAGCCCCCCTGATCGTCAAAACCCCATTGCCGCCGGTCAGGTT
261 GCACATCATGTGCGCACACCCCCAGCCCCCCTGATCGTCAAAACCCAAATGCCGCCGGTCAGGTT
* *
18458828 CTCCGGTGATGCTCCGACGATGGTGACCCGACGAAGAAAAATGCGGCACCAGCACTTGCCCGAGC
326 CTCC-G-GA-GCT----CGATGGTGACCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGC
*
18458893 ACAGCATGTGCTGCCCCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGAT
384 ACAGCATGTGCTACCCCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGAT
* ** * **
18458958 TAGACTGGGAATGAACTCTGTATGCCTAATTCAACTGACGAAACGAGCGTGCGGGTGCTCAACCG
449 TAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTACGGGCACTCAACCG
* * * * * * * *
18459023 ACTAGAGGGGCGGGATGCGTAAGCCGGGGATTGGTCGTGTCCCCCTCTGCATGCTGCCGATCTTG
514 ACTAGAGGGGCGGAATGCGCAAACCGGGGATAGGTCGGGTCCCCCTCTACATGCTGCAGATCCTG
* * *
18459088 CTACCGTAACCCTCGATCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACC
579 CTACCGCAACCCTAGATCCGGTCCAATCTTACACTGGGAATGAACTCCATATGCCTAAGCCAACC
*
18459153 GACGAAACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGTGCAAGCCGTG
644 GACGAAACGAGCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGTGCAAGCCGTG
18459218 GATCGATAGGGTGGTAGGTGGGTTTAGGCACA
709 GATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
18459250 TGAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGG
1 TGAAATTTTTTCGAAAGGAGTTTTGGACCCAAAC-T--T--ACATGATCCTTGTATTTTTGTTGG
* **
18459315 CATGCACAAAAAAATTCAGCTAAAAATTGAGCGTGTGCAAGATTTTGTGACCATTTGAAAAAAGT
61 CATGCACAAAAAAATTCAGCTAAAAATTCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGT
*
18459380 AT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAA
126 ATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
18459444 G-GGGATGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
191 GAGGG-TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
18459508 CCCAAT-GCACATCATGTGCGCACACCCCCCAGCCCCCC-GATCGTCGAAACCCAAATGCTGTCG
255 CCC-ATCGCACATCATGTGCGCACA-CCCCCAGCCCCCCTGATCGTCAAAACCCAAATGCCGCCG
*
18459571 GTCAGGTTCTCC-G-G-T-GATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAG
318 GTCAGGTTCTCCGGAGCTCGATGGTGACCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAG
* ** * ** * *
18459632 CCCAGCATGTGCTACTGCAACCTTTGGTCCTGTTC-GATCTTAGA-TTGGAAATGAACTCCGTAT
383 CACAGCATGTGCTACCCCAACCCTCAGTCC-GATCTGATCTTAGACTAGG-AATGAACTCCGTAT
* *
18459695 GCTTAGACTGGGAATGAACTCCGTATGCCT-ATATCAACCCACGAAACGAGCGTACGGGCATTCA
446 GATTAGACTGGGAATGAACTCCGTATGCCTAAT-TCAACCCACGAAACGAGCGTACGGGCACTCA
** * * *
18459759 GTCGGCTAGAGGGGCGGAATGCGCAAACCGGGGATAGGTCGGGTCCCCTTCTACGTGCTGCTAG-
510 ACCGACTAGAGGGGCGGAATGCGCAAACCGGGGATAGGTCGGGTCCCCCTCTACATGCTGC-AGA
* ** * * *
18459823 TCCTGTTGTCGCAACCCTTAG-TCTGGTTCAATCTTAGACTGGGAATGAACTCCATATGCCTAAG
574 TCCTGCTACCGCAACCC-TAGATCCGGTCCAATCTTACACTGGGAATGAACTCCATATGCCTAAG
* * * * *
18459887 TCAACCGATGAAACAAGCGGGCGGGCGGGCGGGTGGGAGGGCGGCACTATGCCGGCCAGAGAGAC
638 CCAACCGACG--A-AA-----CGAGCGGGCGGGT-GG-GCG-GGCACTACGCCGGCCAGAGAGAC
*
18459952 TG-GATGTGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACA
692 -GAGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
18460001 T
1 T
18460002 CTTCATCTTT
Statistics
Matches: 659, Mismatches: 68, Indels: 46
0.85 0.09 0.06
Matches are distributed among these distances:
739 5 0.01
740 251 0.38
741 6 0.01
742 1 0.00
743 2 0.00
745 1 0.00
746 1 0.00
747 31 0.05
748 14 0.02
749 2 0.00
750 6 0.01
751 239 0.36
752 100 0.15
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (740 bp):
TGAAATTTTTTCGAAAGGAGTTTTGGACCCAAACTTACATGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAATTCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTATCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGG
TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCAGCCCCCCTGATCGTCAAAACCCAAATGCCGCCGGTCAGGTT
CTCCGGAGCTCGATGGTGACCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCACAGCAT
GTGCTACCCCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGATTAGACTG
GGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTACGGGCACTCAACCGACTAGAG
GGGCGGAATGCGCAAACCGGGGATAGGTCGGGTCCCCCTCTACATGCTGCAGATCCTGCTACCGC
AACCCTAGATCCGGTCCAATCTTACACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGTGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACA
Found at i:18460622 original size:26 final size:27
Alignment explanation
Indices: 18460586--18460636 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
18460576 TTGATCTTAG
18460586 TGGGAATGAACTCCGTATG-CTAAGAC
1 TGGGAATGAACTCCGTATGCCTAAGAC
18460612 TGGGAATGAACTCCGTATGCCTAAG
1 TGGGAATGAACTCCGTATGCCTAAG
18460637 TCAACCCACG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (27 bp):
TGGGAATGAACTCCGTATGCCTAAGAC
Found at i:18462697 original size:26 final size:26
Alignment explanation
Indices: 18462668--18462746 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
18462658 CCGATCCGAT
*
18462668 CTTAGTCTAGGAATGAACTCCGTATG
1 CTTAGTCTGGGAATGAACTCCGTATG
18462694 CTTAGAT-TGGGAATGAACTCCGTATG
1 CTTAG-TCTGGGAATGAACTCCGTATG
*
18462720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGTCTGGGAATGAACTCCGTATG
18462746 C
1 C
18462747 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGTCTGGGAATGAACTCCGTATG
Found at i:18463626 original size:904 final size:897
Alignment explanation
Indices: 18461839--18463827 Score: 2686
Period size: 904 Copynumber: 2.2 Consensus size: 897
18461829 CGCAAACCTA
* * * * * * *
18461839 GTATGCCTAAGTCAACTCATGAAACGAGTGTGCGGGAGCTCAGCCGACCAGAGGGGTGTGATGCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCAGAGGGGCGGGATGTG
* * * * * *
18461904 CAAGCTGGGGATCGGTCGGATCCCCCTCTCCGTGCTGCCGATCTTGCTGCCGCAATCCTCGATCC
65 CAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCC
* * * * * * *
18461969 GGTCTGATCTTAGACTGGTAATGAACTCCGTACGCCTAAGCCAACCGACGGAACGAGCGGGTGGT
130 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGG
* * *
18462034 CGGGCGGGCACTATGCCAGCCAGAGAGACAGGATGCGCAAGTGTGGATCGATAGGGTGGTAGGTG
195 CGGGCGGGCACTACGCCAGCCAGAGAGACAGGATGCACAAGCGTGGATCGATAGGGTGGTAGGTG
* *
18462099 GGTTTAGGCACATCCTAATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAA
260 GGTTTAGGCACATCCTAATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAA
*
18462164 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
325 TGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGACTCATTTTCTATTTTTCACGATTT
* ** *
18462229 TTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTTTGGAAGGATTTTTAGCCCCAAACTTG
390 TTGAAACTTTTTACGGTTCGGGATTTTTAAAAATTTTTTTGGAAGGATTTTGAGCCCCAAACTTG
* * * *
18462294 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTA
455 GTAGACGTGATCCCTGTATTTTTGTTGACATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
18462359 CAAGTTTTGTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCA
520 CAAGTTTTGTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
18462424 AACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
585 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* *
18462489 GGCCAATATAAGGTCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCT
650 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCT
** * * *
18462554 GATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGGTGCCCCGATGCGGCACCAGC
715 GATCACCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTGCCACGATGCGGCACCAGC
* ** * * * * * * **
18462619 ACATGCCCAAGCCTAGCATGTGCTACCGCAACCCTCAGTCCGATCCGATCTTAGTCTAGGAATGA
780 ACA-G-CCAAG-CAAAAATGTGCTACCGCAACCAT-AGCCCGAGCCCAGCATAGTCTAGGAACCA
*
18462684 ACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
841 ACTCCGTATGCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
* *
18462741 GTATGCCTAAGTCAACCCACGGAACGAGCGCGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGTG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGGATGTG
* * * *
18462806 CAAGCCGGGAATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTG-TCACCACAACCCCCGGTC
65 CAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-GCCGCAACCCTCGGTC
* *
18462870 CGGTCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCAACCGATGAAACAAGCAGGCG
129 CGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCG
* * * *
18462934 GGCGGGCGGGCACTACGCCGGCCGGAGGGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAG
193 GGCGGGCGGGCACTACGCCAGCCAGAGAGACAGGATGCACAAG-CGTGGATCGATAGGGTGGTAG
* *
18462999 GTGGGTTTAGGCACAT-CTCAATATTTCTGCATGCCATTGCCATTTTTATGGCTTGTAAACTCAT
257 GTGGGTTTAGGCACATCCT-AATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAACTCAT
*
18463063 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGACTCGTTTTCTATTTTTCACG
321 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGACTCATTTTCTATTTTTCACG
*
18463128 A-TTTTGAAAACTTTTTACTGTTCGGGATTTTTAAAAATTTTTTTGGAAGGAGTTTTGA-CCCCA
386 ATTTTTG-AAACTTTTTACGGTTCGGGATTTTTAAAAATTTTTTTGGAAGGA-TTTTGAGCCCCA
*
18463191 AACTTGGTAGACGTGATCCCTGTATTTTTGTTGATATGCAAAAAAAAGATTCAGCTAAAAACTCG
449 AACTTGGTAGACGTGATCCCTGTATTTTTGTTGACATGCAAAAAAAA-ATTCAGCTAAAAACTCG
18463256 AAGTGTACAAGATTTTG-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
513 AAGTGTACAAG-TTTTGTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
18463320 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
577 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
*
18463385 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCCCCA
642 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CC-
* * *
18463450 CCCCGGGCCCCTCGATCACCGGAACCCCAATGCTACCGGTCAGGTTCTCCGACGATGCT-CCGAC
703 CCCCGGCCCCCT-GATCACCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTGCC-AC
*
18463514 GATG-GTGC-CCCG-AC-G-C-AG-AAAAATGTGGC-ACCAGC-A-CAT-GCCCGAGCCCAGCAT
766 GATGCG-GCACCAGCACAGCCAAGCAAAAATGT-GCTACC-GCAACCATAGCCCGAGCCCAGCAT
** *
18463568 -GTGCT-GTCGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGAC
828 AGT-CTAG--G-AACCAAC--TCC-GTATG--CTTAGATTGGGAATGAACTCCATATGCTTAGAC
*
18463631 TGGGAATTAACTCC
884 TGGGAATGAACTCC
* * *
18463645 GTATGCTTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGTG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGGATGTG
* * * ** * *
18463710 TAAGCCGGGGATCAGTCGGGCCCCCCTCTACGTGCTGTTGATCCAGCTGCCGTAACCCTCGGTCC
65 CAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCC
* * *
18463775 GATCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACAGACGAAA
130 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
18463828 TGAGCGGGCG
Statistics
Matches: 954, Mismatches: 104, Indels: 56
0.86 0.09 0.05
Matches are distributed among these distances:
896 3 0.00
897 12 0.01
898 1 0.00
899 5 0.01
900 9 0.01
901 8 0.01
902 208 0.22
903 234 0.25
904 399 0.42
905 7 0.01
907 4 0.00
908 17 0.02
909 47 0.05
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (897 bp):
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCAGAGGGGCGGGATGTGC
AAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGGC
GGGCGGGCACTACGCCAGCCAGAGAGACAGGATGCACAAGCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCCTAATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
TGAAACTTTTTACGGTTCGGGATTTTTAAAAATTTTTTTGGAAGGATTTTGAGCCCCAAACTTGG
TAGACGTGATCCCTGTATTTTTGTTGACATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGTTTTGTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTG
ATCACCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTGCCACGATGCGGCACCAGCA
CAGCCAAGCAAAAATGTGCTACCGCAACCATAGCCCGAGCCCAGCATAGTCTAGGAACCAACTCC
GTATGCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
Found at i:18463634 original size:26 final size:26
Alignment explanation
Indices: 18463598--18463653 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
18463588 CCGGTCTGAT
*
18463598 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18463624 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18463650 CTTA
1 CTTA
18463654 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18464186 original size:26 final size:26
Alignment explanation
Indices: 18464157--18464209 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18464147 TCGGTCCGAT
18464157 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18464183 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18464209 C
1 C
18464210 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18464369 original size:559 final size:560
Alignment explanation
Indices: 18463301--18464372 Score: 1592
Period size: 559 Copynumber: 1.9 Consensus size: 560
18463291 GTCCCCATTT
*
18463301 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
1 CAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18463366 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
66 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCACACA
* * *
18463431 TGATGTGCGCACACCCCCACCCCGGGCCCCTCGATCACCGGAACCCCAATGCTACCGGTCAGGTT
131 TCATGTGCGCACA--CCCACCCCGGCCCCCCCGATCACCGGAACCCCAATGCTA-CGGTCAGGTT
* * * * *
18463496 CTCCGACGATGCTCCGACGATGGTGCCCCGACGCAGAAAAATGTGGCACCAGCACATGCCCGAGC
193 CTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAACACATGCCCAAGC
** * * *
18463561 CCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCT
258 CCAGCATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCT
* *
18463626 TAGACTGGGAATTAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
323 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
* * * * *
18463691 GCCAGAGGGGCAGGATGTGTAAGCCGGGGATCAGTCGGGCCCCCCTCTACGTGCTGTTGATCCAG
388 GCCAAAAGGGCAGGATGCGCAAGCCGGGGATCAGTCGGGCCCCCCTCGACGTGCTGTTGATCCAG
* * * *
18463756 CTGCCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACA
453 CTACCGCAACCCTAGGTCCGATCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACA
18463821 GACGAAATGAGCGGGCGGAGTGGCGGGCGAGCACTATGCCAGC
518 GACGAAATGAGCGGGCGGAGTGGCGGGCGAGCACTATGCCAGC
18463864 CAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
1 CAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18463929 GTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCATGTACCAGCACCCATCACACA
66 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCACACA
** *
18463994 TCATGTGCGCACA-CC-CCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGTA-GGTCAGGTTC
131 TCATGTGCGCACACCCACCCCGGCCCCCCCGATCACCGGAACCCCAATG-C-TACGGTCAGGTTC
* * * *
18464056 TCTGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAACACTTGCGCAAGCC
194 TCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAACACATGCCCAAGCC
* * *
18464121 CAGCATGTGCTACCGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
259 CAGCATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTT
* * * *
18464186 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGTGCGCTCAGCCGG
324 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGG
** * * * * * *
18464251 CCAAAAGGGTGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCTTCGATGTGCTGTTGATCCTGC
389 CCAAAAGGGCAGGATGCGCAAGCCGGGGATCAGTCGGGCCCCCCTCGACGTGCTGTTGATCCAGC
* *
18464316 TACCGCAACCCTAGGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
454 TACCGCAACCCTAGGTCCGATCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAA
18464373 AACAACTGAT
Statistics
Matches: 453, Mismatches: 54, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
559 312 0.69
560 3 0.01
561 2 0.00
563 136 0.30
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (560 bp):
CAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCACACA
TCATGTGCGCACACCCACCCCGGCCCCCCCGATCACCGGAACCCCAATGCTACGGTCAGGTTCTC
CGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCA
GCATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCC
AAAAGGGCAGGATGCGCAAGCCGGGGATCAGTCGGGCCCCCCTCGACGTGCTGTTGATCCAGCTA
CCGCAACCCTAGGTCCGATCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACAGAC
GAAATGAGCGGGCGGAGTGGCGGGCGAGCACTATGCCAGC
Found at i:18466423 original size:26 final size:26
Alignment explanation
Indices: 18466394--18466446 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18466384 CCGGTTTGAT
* *
18466394 CTTACACTGGGAATGAACTCCGTATG
1 CTTACAATGGGAATGAACTCCATATG
* *
18466420 CTTAGAATGTGAATGAACTCCATATG
1 CTTACAATGGGAATGAACTCCATATG
18466446 C
1 C
18466447 GTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACAATGGGAATGAACTCCATATG
Found at i:18468050 original size:732 final size:731
Alignment explanation
Indices: 18466637--18468122 Score: 2157
Period size: 732 Copynumber: 2.0 Consensus size: 731
18466627 GGGCAGGCGG
* * * * *
18466637 GCGGGCACTACGTCGGCTAGAGAGACGGAATGCGTAAGCCGTGGATTGATAGGGTGGTAGGTGGG
1 GCGGGCACTA-GCCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGGTGCTAGGTGGG
18466702 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATCGCTTGTAAATTCATACAATG
65 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATCGCTTGTAAATTCATACAATG
** *
18466767 GTCCCTTGTGCCTTCACGTGAAGTTTCATGACAAGACGACCCGTTTTTTATTTTTCATGATTTTC
130 GTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACCCGTTTTCTATTTTTCATGATTTTC
** * * *
18466832 AAAACTTTTGGCGGTTCAAAATATTTTAAATTTTTTTTGGAAGGAGATTTGGCCCCAAACTTGGT
195 AAAACTTTTGAAGGTTCAAAATATTTTAAAATTTTTTCGAAAGGAGATTTGGCCCCAAACTTGGT
*
18466897 AGACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACA
260 AGACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
18466962 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18467027 CCTATAAATTCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
390 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTCGATGAGGGATAGGGGG
* * * * *
18467092 CCCATATAAGGGGCAAGTACGAGCACCTATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTG
455 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCTG
* * * *
18467157 ATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTAATGATGCACCGACGATGGTGCCCCAGTG
520 ATCACCGGAACCCCAAAGCCGCCGGTCAGGTTCTCCAATGATGCACCGACGATGGTGCCCCAGCG
* * * * * * *
18467222 AAGAAAAATGTGGCACCGGCACATGTCCGAGCCCTGCATGTGCTGCCACAACCCTTGGTCTGGTC
585 AAGAAAAATGCGGCACCAGCAAATGCCCAAGCCCAGCATGTACTGCCACAACCCTTGGTCTGGTC
* * *
18467287 CGATCTTAGACTGGGAAAGAACTCTGTATGCTTAGACTAGGAATGAACTCCATTTGCCTAAGTCA
650 CGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATACCTAAGTCA
18467352 ACCAACGAAACGAGCAT
715 ACCAACGAAACGAGCAT
* * *
18467369 GCGGGCACTCAGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGCTTGGTGGG
1 GCGGGCACT-AGCCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGGTGCTAGGTGGG
*** *
18467434 TTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
65 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATCGCTTGTAAATTCATACAATG
* * *
18467499 GTCCCTTAAGCCTTCACGTGAAGTTTCAT-AGCAAGATGACTCGTTTTCTATTTTTTATGATTTT
130 GTCCCTTAAGCCTTCACGTGAAGTTTCATGA-CAAGACGACCCGTTTTCTATTTTTCATGATTTT
** * * *** * * *
18467563 TGAAGCTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCGAAACTTGG
194 CAAAACTTTTGAAGGTTCAAAATATTTTAAAATTTTTTCGAAAGGAGATTTGGCCCCAAACTTGG
* * * *
18467628 TAGACGTGATCCTTGTATTTTTTTTGGCTTGCATAAAAAAATTCAGCTAAGAACTCGAAGTGTAC
259 TAGACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
18467693 AAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
324 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
18467758 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGATGTTCGATGAGGGATAGGGG
389 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTCGATGAGGGATAGGGG
* *
18467823 GCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCTCCCT
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCT
*** * * * * *
18467888 GATCGTTGGAACCCCAAAGCCGCCGGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCTCGGC
519 GATCACCGGAACCCCAAAGCCGCCGGTCAGGTTCTCCAATGATGCACCGACGATGGTGCCCCAGC
**
18467953 GAAGAAAAATGCGGCACCAGCAAATGCCCAAGCCCAGCATGTACTGTGACAACCCTTGGTCTGGT
584 GAAGAAAAATGCGGCACCAGCAAATGCCCAAGCCCAGCATGTACTGCCACAACCCTTGGTCTGGT
* * *
18468018 CCGATCTTAGA-TGGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGT
649 CCGATCTTAGACT-GGGAAAGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATACCTAAGT
* * *
18468082 CAACCCACGAAATGAGCGT
713 CAACCAACGAAACGAGCAT
* *
18468101 GTGGGCGCTGAGCCGGCCAGAG
1 GCGGGCACT-AGCCGGCCAGAG
18468123 GGGCGAGATA
Statistics
Matches: 666, Mismatches: 85, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
731 2 0.00
732 663 1.00
733 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (731 bp):
GCGGGCACTAGCCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGGTGCTAGGTGGGT
TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATCGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACCCGTTTTCTATTTTTCATGATTTTCA
AAACTTTTGAAGGTTCAAAATATTTTAAAATTTTTTCGAAAGGAGATTTGGCCCCAAACTTGGTA
GACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTCGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCTGA
TCACCGGAACCCCAAAGCCGCCGGTCAGGTTCTCCAATGATGCACCGACGATGGTGCCCCAGCGA
AGAAAAATGCGGCACCAGCAAATGCCCAAGCCCAGCATGTACTGCCACAACCCTTGGTCTGGTCC
GATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATACCTAAGTCAA
CCAACGAAACGAGCAT
Found at i:18468052 original size:26 final size:26
Alignment explanation
Indices: 18468023--18468073 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18468013 CTGGTCCGAT
18468023 CTTAGA-TGGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
18468049 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18468074 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18468944 original size:26 final size:26
Alignment explanation
Indices: 18468915--18468967 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18468905 CTAGTCCAAT
18468915 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18468941 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18468967 C
1 C
18468968 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18469842 original size:26 final size:26
Alignment explanation
Indices: 18469813--18469876 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
18469803 CTCGGTCTGA
18469813 TCCGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
18469839 TCCGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
18469865 TCCGTATGCTTA
1 TCCGTATGCTTA
18469877 AGTCAAACCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:18470770 original size:26 final size:26
Alignment explanation
Indices: 18470734--18470786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18470724 CCGGTCTGAT
*
18470734 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18470760 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18470786 C
1 C
18470787 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18471208 original size:905 final size:903
Alignment explanation
Indices: 18467369--18471595 Score: 5582
Period size: 904 Copynumber: 4.7 Consensus size: 903
18467359 AAACGAGCAT
* * * *
18467369 GCGGGCACT-CAGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGCTTGGTGG
1 GCGGGCACTACA-CCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
18467433 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
65 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
18467498 GGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGA-TGACTCGTTTTCTATTTTTTATGATTT
130 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACT-ACTCGTTTTCTATTTTTCATGATTT
* * *
18467562 TTGAAGCTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCGAAACTTG
194 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCGAAACTTG
* * * *
18467627 GTAGACGTGATCCTTGTATTTTTTTTGGCTTGCATAAAAAAATTCAGCTAAGAACTCGAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
18467692 CAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTTAGACACTTTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
18467757 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGATGTTCGATGAGGGATAGGG
389 AACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
18467822 GGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCTCC
453 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* ** * * * * *
18467886 CTGATCGTTGGAACCCCAAAGCCGCCGGTCAGGTTCTC-CAGTGATGCTCCGGCGATGGTG-CCT
518 CCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCTGA-CGATGCTCCGGCGATGGTGCCCT
* * * * *
18467949 CGGCGAAGAAAAATGCGGCACCAGCAAATGCCCAAGCCCAGCATGTACTG-TGACAACCCTTGGT
582 -GACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG-CAACCCTCGGT
*
18468013 CTGGTCCGATCTTAGA-TGGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACC
645 CTGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * * *
18468077 TAAGTCAACCCACGAAATGAGCGTGTGGGCGCTGAGCCGGCCAGAGGGGCGAGATATGCAAGCCG
709 TAAGTCAACCCACAAAACGAACATGCGGGCGCTTAGACGGCCAGAGGGGCGGGATACGCAAGCCG
* * ** ** *
18468142 GGGATCAATCGGGTCCCCCTCTGCGTGCTGCAGAT-CTGA-TAGCCATGACCCTCGGT-TCGATC
774 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT-ACT-GCCACAACCCTTAGTCT-GGTC
** *
18468204 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACG-AA--A-----C-GA---G
836 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGG
18468257 CGG
901 CGG
* *
18468260 GCGGGCACTACACCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
18468325 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTATATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
18468390 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTT
* *
18468455 GAAGCTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCGAAACTTGGT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCGAAACTTGGT
* * * *
18468520 AGACGTGATCCTTGTATTTTTTTTGGCTTGCATAAAAAAATTCAGCTAAGAACTCGAAGTGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
18468585 AGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18468650 CCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-GGGAATAGGGG
391 CCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG-ATAGGGG
* *
18468714 GCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGGCCCCCC
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * * * *
18468779 CGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCTG-CGATGCTCCGGTGATGGTGCCCTA
519 CGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCT-CTGACGATGCTCCGGCGATGGTGCCCTG
* * * * * *
18468843 ACGAAGCAAAATGCGACACCAGCACATGCCCGAGCCCAGGATGTGCTACCGCAACCCTCGGTCTA
583 ACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* *
18468908 GTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
648 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * ** * *
18468973 TCAACCCATAAAAC-AAGCATACAGGCACTCA-ACCGGGTAGAGGGGCGGGTTGCGCAAGCCGGG
713 TCAACCCACAAAACGAA-CATGCGGGCGCTTAGA-CGGCCAGAGGGGCGGGATACGCAAGCCGGG
* * * * * * *
18469036 GATCGGTCGGGTCCCCGTTTGCGTGCTGTCGATCCTACTACCGCAACCCTTAGTTTGGTCCAATC
776 GATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTTAGTCTGGTCCAATC
* * * * * **
18469101 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACAAGCAGGTGGGTGGGCGG
841 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGG
* * * * *
18469164 GCGAGCACTACGCC-AGCCAGAGAGAAGGGTTGCGCATGCCGTGGATCGATAGGG-GTGTAGGTG
1 GCGGGCACTACACCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG-GTAGGTG
* *
18469227 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTGATGGCTTGTAAATTCATACAA
64 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
18469292 TGGTCCCTTAAGCCTTCACATGAAGTTTCAAGGCAAGA-TGACTCGTTTTCTATTTTTCATGATT
129 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACT-ACTCGTTTTCTATTTTTCATGATT
* * * * *
18469356 TTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCTGAAGGAGTTTTGGCCCCAAAGTT
193 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCGAAACTT
*
18469421 GGTAGACGTGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
258 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
18469486 ACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTGCTGGCAAC
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
18469551 AAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATTAGGGATA-G
388 AAACCTGTAAA-TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
18469615 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACATCCCCCCCGGCCC
452 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCC
* * * * * *
18469680 CCCCGATCTCTGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCACCAGCAATGGTG-CC
516 CCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCC
** * ** * * * **
18469744 TCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAACATTTGCTGCCACAAATCTCGGT
581 T-GACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
18469809 CTGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
645 CTGGTCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * **
18469874 TTAAGTCAAACCACGAAACGAGA-GTGCGGG-TC-T-GTCGGCCAAAGGGGCGGGATGTGCAAGC
708 CTAAGTCAACCCACAAAACGA-ACATGCGGGCGCTTAGACGGCCAGAGGGGCGGGATACGCAAGC
* * * * *
18469935 CGGGGATTGGTCGGGTTCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCCTAGTCCGGTCC
772 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTTAGTCTGGTCC
*
18470000 AATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGCGGACGGGCG
837 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA------G-CGGGCG
18470065 GACGGGCGGGCGG
895 GA----CGGGCGG
* * * * *
18470078 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCCCAAGCCGTGCATCGATAGGGTGGTAGGTTGG
1 GCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** *
18470143 TTTGGGTGCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
18470208 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTACTTTTCACGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTT
* * * *
18470273 GAAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTCTGGCCCTAAACTTGGT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCGAAACTTGGT
* *
18470338 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACC
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
**
18470403 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTTCTACTGGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18470468 CCTGTAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
391 CCTGTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* ** * *
18470533 CAATATAGGGGCCAAGTACCAGCACCCATAACACATCGTGTGCGCACAACCCCCTTCGGCCCCCC
456 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC-CCGGCCCCCC
* * * * *
18470598 CGATTGCCGAAACCCTAATGTCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGCGCCCTGA
519 CGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCTGA
* * *
18470663 CGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGTATGTGCTGCCGCAACCCTCGGTCCGG
584 CGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * *
18470728 TCTGATCTTAGACTGGGAATGAACTGCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
649 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
18470793 CAACCCGCAAAACGAACATGCGGGCGCTTAGACGGCCAGAGAGACAGGCTACGCAAGCTGGGGAT
714 CAACCCACAAAACGAACATGCGGGCGCTTAGACGGCCAGAGGGGCGGGATACGCAAGCCGGGGAT
* * * * *
18470858 CGACCGAGTCCCCCTCTGCGTGTTGCCGATCCTACTGCCACAACCCTTGGTCTGGTCCTATCTTA
779 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTTAGTCTGGTCCAATCTTA
*
18470923 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGG
844 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGG
* * * *
18470983 GCGGGTACTACACCGACCAGAGAGACGGGATGCGTAAGCCGTGCATCGATAGGGTGGTAGGTTGG
1 GCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** *
18471048 TTTGGGTGCATCTTCGTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
18471113 GTCCCTTAAGGCTTCATGTGAAGTTTCATGGCAAGACTACTCGTTTTCTACTTTTCACGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTT
* * * *
18471178 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTCTGGCCCTAAACTTGGT
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCGAAACTTGGT
* *
18471243 AAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACC
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
18471308 AGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18471373 CCTGTAACATCTCAAATG-T-TTGTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGAATAGGGG
391 CCTGTAA-ATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
18471436 GCCAACATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCCCGACCCCAC
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * *
18471501 CGATCGCCAGAACCCC-ATTTCCGTCGATCAGGTTCT-TCGGCGATGCTCCGGCGATGGTGGCCC
519 CGATCGCCGGAACCCCAATGT-CGTCGGTCAGGTTCTCT-GACGATGCTCCGGCGATGGT-GCCC
* * *
18471564 -GACGAAGAAAAATGCAGCGCCAGCATATGCCC
581 TGACGAAGAAAAATGCGGCACCAGCACATGCCC
18471596 CAACCCACAA
Statistics
Matches: 2948, Mismatches: 322, Indels: 120
0.87 0.09 0.04
Matches are distributed among these distances:
890 3 0.00
891 481 0.16
892 298 0.10
893 12 0.00
895 1 0.00
901 1 0.00
902 4 0.00
903 260 0.09
904 531 0.18
905 472 0.16
906 81 0.03
907 1 0.00
908 1 0.00
909 9 0.00
910 6 0.00
912 1 0.00
913 122 0.04
914 422 0.14
915 116 0.04
916 126 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
GCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTT
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCGAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
ATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCTGACG
AAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACAAAACGAACATGCGGGCGCTTAGACGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCG
ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTTAGTCTGGTCCAATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGG
Found at i:18474425 original size:716 final size:716
Alignment explanation
Indices: 18472999--18475198 Score: 3242
Period size: 716 Copynumber: 3.1 Consensus size: 716
18472989 CTGCTACCGT
* * * *
18472999 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACTAAA
1 AACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
** * * * *
18473064 CGAGCGTGCACGCAGGCGAGCGGGCTCTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
66 CGAGCG-GCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
18473129 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* * * *
18473194 CTTCTAAATTCAAACAATGGTCCCTTAACCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
18473259 TCTATTTTTCACGATTTTTAAAACTTTTTGCAGTTCGAGATTTTTTAAACTTTTTTC-AGAAGGA
260 TCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTAGAGATTTTTTAAAATTTTTTCGA-AAGGA
* * * * * *
18473323 GTTTTGGCCTCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAAATCAG
324 GTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
18473388 CTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAA-TTTAGACACT
389 CTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGT-CCCAATTTTAGACACT
*
18473452 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGA
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
18473517 GGTTTGATTAGGGATAGGCGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCTTGTGC
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * * *
18473582 TCACACCCCCCCGGCCCCTGATCGTCGGAACCCTAACGCCGTCGGTCAGGTTCTCTGGCGATGCT
583 TCACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * *
18473647 CCGACGATGGTGCCCGGACGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
648 CTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
18473712 CTGC
713 CTGC
*
18473716 AACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCGACAAAA
1 AACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
* * * *
18473780 TGAGCGAGCGGGCAGGCGGGCGGGAAATACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGAT
66 CGAGCG-GCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
18473845 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCGTGCCAGTGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* *
18473910 CCTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * **
18473975 TCTAATTTTCACAATTTTTGAAACTTTTTGCAGATA-AGGATTTTTTAAAATTTTTTCGAAAAAA
260 TCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTAGA-GATTTTTTAAAATTTTTTCGAAAGGA
*
18474039 GTTTTTTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
324 GTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
*
18474104 CTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCTAATTTTAGACACTT
389 CTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTT
*
18474169 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAG
454 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
18474234 TTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGTGCT
519 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCT
* *
18474299 CACACCCCCCAGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTC
584 CACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * * * *
18474364 TGACAATGGTGCCCCGACGAAGAAAAATACGACACCAGCACGTGCCTGAGCCCAGCATGTGCTG-
649 TGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
18474428 TCGC
714 T-GC
* *
18474432 AACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
* *
18474497 CGAGTGGACGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCAGTGGAT
66 CGAGCGG-CGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
18474562 CGATTGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* * **
18474627 CTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTGCATGGTTAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
18474692 TCTATTTTTCACGATTTTTGAAACTTTATGCGGTTTGAGATTTTTTAAAATATTTTTCGAAAGGA
260 TCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTAGAGATTTTTTAAAAT-TTTTTCGAAAGGA
* * *
18474757 GTTTTGGT-CCCAAACCTAGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAATAAAATTCA
324 GTTTT-GTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * **
18474821 GCTAAAAACTCGAAGTGTACAATATTTTATGACCATTTGAAAAAAGTGTCCCCTTTTTAGACACT
388 GCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACT
* * * * **
18474886 TTAATGGCTACTAGCACCAAACCTATAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTTAA
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
18474951 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCACCGCACATCATGTGC
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
18475016 ACACACCCCCCTGACCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATG
583 TCACACCCCCC--AGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * * *
18475081 CTCTGACGATGGCGCCCCGACAAAGAAAAATGTGGCACTAGCAAATGCCCGAGCCCAGCATGTGC
646 CTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
18475146 TGCCGT
711 TGCTGC
* * * *
18475152 AACCCTCGGTCAGTTCCGATCTTAGACTGGGAATGAACTCCATATGC
1 AACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
18475199 TTAGACTGCG
Statistics
Matches: 1332, Mismatches: 139, Indels: 21
0.89 0.09 0.01
Matches are distributed among these distances:
715 6 0.00
716 637 0.48
717 282 0.21
718 258 0.19
719 1 0.00
720 148 0.11
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (716 bp):
AACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
CGAGCGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTGAAACTTTTTGCAGTTAGAGATTTTTTAAAATTTTTTCGAAAGGAGT
TTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCA
CACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTG
ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTG
C
Found at i:18476090 original size:26 final size:26
Alignment explanation
Indices: 18476060--18476110 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18476050 GGTATGATCA
18476060 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
18476086 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18476111 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18476325 original size:886 final size:895
Alignment explanation
Indices: 18474423--18479290 Score: 5845
Period size: 919 Copynumber: 5.4 Consensus size: 895
18474413 GCCCAGCATG
* *
18474423 TGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18474488 CCGACAAAACGAGTGGACGGGCAGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
66 CCGACGAAACGAGCGGGCGGG-TGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGAGCA
* * *
18474552 AGCAGTGGATCGATTGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * **
18474617 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTGCATGGTTAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
18474682 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTATGCGGTTTGAGATTTTTTAAAATATTT
260 CGACTC-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAAT-TTT
* * * * *
18474747 TTCGAAAGGAGTTTTGGTCCCAAACCTAGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
323 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
18474812 TAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTATGACCATTTGAAAAAAGTGTCCCCTTT
388 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
18474877 TTAGACACTTTAATGGCTACTAGCACCAAACCTATAAAATCTTAAATGCTCTTTAAGGGGGTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18474942 AGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCACCGCAC
518 AGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
18475007 ATCATGTGCACACACCCCCCTGACCCCCCCGATCGCCGGAACCCCAATGCCA--CCGGTCAGGTT
583 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-CATGCAGGTCAGG-T
* * * *
18475070 CTCCGACGATGCTCTGACGATGGCGCCCCGACAAAGAAAAATGTGGCACTAGCAAATGCCCGAGC
646 CT-C--C--T-CTC-GACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* ** * * *
18475135 CCAGCATGTGCTGCCGTAACCCTCGGTCAGTTCCGATCTTAGACTGGGAATGAACTCCATATGCT
704 CCAGCATGTGCTGTCACAACCCTCGG-CCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCT
* * * * *
18475200 TAGACTGCGAATGAACTCCGTTTGCCTAATTCAACCCATGAAACA-AGCGTGCGGGCACTCAGCC
768 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-AGAGCGTGCGGGCGCTCAGCC
* * * ** * * * *
18475264 AGCCAGAGAGGCAGGATGCATAAGTTGGGGATCAACCGGGTCCCCCTCTATC-TACT-ACTGATC
832 GGCCAGAGGGGCGGGATGCATAAGCCGGGGATCGACCGGGTCCCCCTC-AGCGTGCTGTC-GATC
18475327 C
895 C
* ** * *
18475328 TGCTGCCACAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18475393 CTGACGAAACGAGCGGGCGGGTGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGAGCAA
66 CCGACGAAACGAGCGGGCGGGTGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGAGCAA
* **
18475458 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTATGTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
18475523 TTTTTATGGCTTGTAAATTCATATAATTGTCCTTTAAGCCTTCACGTGAAGTTTCATGGC-A-A-
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * *
18475585 GA-T-TTTT-TATTTTTCACAATTTTTGAAACTTTTTGCTGTTCAAGATTTTTTAAAATTTTTTC
261 GACTCTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* *
18475647 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCATGTATTTTTGTTGGCATGCACAAAAA
326 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * * *
18475712 AATACAGCTGAAAACTAGAAGTGTGCAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCA
391 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
18475777 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
456 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
18475842 TCTTGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
521 TCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
18475907 ATGTGTGCACACCCCCCACGGCCCCCCCGATCATCGGAACCCCAATGC-TGCAGGTCAGGT-T-C
586 ATGTGCGCACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCATGCAGGTCAGGTCTCC
* * **
18475969 T-TCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTTGCATGTGC
650 TCTCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
18476033 TGTCAAAACCCTCAGCCGGTATGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
715 TGTCACAACCCTCGGCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
* * *
18476098 GAACTCCGTATGCCTAAGTCAACACATGAAAAGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCG
780 GAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* *
18476163 GGATGCACAAGCCGAGGATCGACCGGGTCCCCCTCAGCGTGCTGTCGATCC
845 GGATGCATAAGCCGGGGATCGACCGGGTCCCCCTCAGCGTGCTGTCGATCC
* * * *
18476214 TGCTGCCGTAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18476279 CTGACGAAACGAGCGGGCGGGTGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGTGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGAGCAA
**
18476344 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATAACA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
18476409 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
18476474 GACTCGTTTTATATTTTTCATAATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
261 GACTC-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* ** *
18476539 CGGAAGGAGTTTTCGCCCTGAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * * *
18476604 AAAGTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGCCCATTGGAATAAAA-TGTCGCAATTT
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTT
* * * *
18476668 CAGACACTTTAATGGCTATTTGCAGCAAACCTGTAAACTCTCAAATGCTCTTTAAGGGGGAGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18476733 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATCAGGGCCAAGTACCAGCACCCATCACACA
519 GTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
18476798 TCATGTGTG--CACCCCCCCGGCCCCCCCGACCGTCAGAACCCCAATGCCGTCAGTACCCCAATG
584 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAA-----T--G-----C-ATG
* *
18476861 CATCAGGTCAGGTTCTCCGGTAATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGCCACCA
636 ---CAGGTCAGG-TCTCC-----T-CT-CGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCA
* * * *
18476926 GCACATGCCCAAGCCCAGCATTTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAAT
690 GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGG-CCGGTCTGATCTTAGACTGGGAAT
* * * *
18476991 GAACTCCCTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTG
754 GAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTG
* * * * * *
18477056 CGGGCGCTCAACCGGCCAGAGGGGTGGGATGCATAAGCCGGGGATCGACTGGGTCCTCCTCTGTG
819 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCATAAGCCGGGGATCGACCGGGTCCCCCTCAGCG
* *
18477121 TGCTGCCAATCC
884 TGCTGTCGATCC
* * * * *
18477133 TGCTGCCACAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
18477198 CCGACGAAACGAACGGGTGGGTAGACGGGCGGGCACTACGCCGGCCAAAGACACAGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGTGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGAGCAA
18477263 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
18477328 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * **
18477393 TACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTATGGTTC-AGGATTTTTTAAAATTTTT
261 GACTC-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTT
* * *
18477457 TCAGG-AGGTGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATGTTTGTTGGCATGCACAA
324 TC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
18477521 AAAAATTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATT
388 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * * *
18477586 TTAAACACCTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGGGTTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * ** *
18477651 AGTTCTTGAGGTTTGATGACGGATAGCGGGCCAATATTGGGGCCAAGTGCCAGCACCCATCGCAC
518 AGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18477716 ATCATCTACGCACACCCCACCCGGCCCCCTGATCGTCGAAACCCCAATACCGTCGGTACCCCAAT
583 ATCATGTGCGCACACCCC-CCCGGCCCCC----C--CG--------AT--CGTCGGAACCCCAAT
* ** * *
18477781 GCATCCA-GTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCTCGACGAAGAAAAATGTGCCAC
631 GCATGCAGGTCAGG-TCTC---C--T-CT-CGACGATGGTGCCCCGACGAAGAAAAATGTGGCAC
* * * * *
18477845 CAGCACATGCCCAAGCCCAGCATGAGCTG-CTGCAACCCTCGGTCCGTTCCGATCTTAGACTGGG
688 CAGCACATGCCCGAGCCCAGCATGTGCTGTC-ACAACCCTCGG-CCGGTCTGATCTTAGACTGGG
* *
18477909 AATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
751 AATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGC
* * *
18477974 GTGCGGGCGCTCAGTCGGCCAGA-GGACTGGGATGCACAAGCCGGGGATCGACCGGGT--CCC-C
816 GTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCATAAGCCGGGGATCGACCGGGTCCCCCTC
*
18478035 A---T--T-T-G-T-G
880 AGCGTGCTGTCGATCC
* * *
18478042 TGCTGCCCCCACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18478107 CCGA--AAA--AACGAGCGGGTGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCA-CA
66 CCGACGAAACGAGCGGGCGGGTGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG-AGCA
* * * ** ** * *
18478167 TGCCATGGATCGATAGAGTGGTAGGTGGGTTTACTCACATCTTCATATTTCTATGTGCCAACGCA
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
18478232 ATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
18478297 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGATATTTTTTAAAATTTTT
260 CGACTC-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * * *
18478362 TGGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18478427 AAAATTCAGCTAAAAAATCGAAGTATGCAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATT
* *
18478492 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGTTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18478557 AGTTCTCAAGGTTTGATCATGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCAC
518 AGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * *
18478622 ATCATGTGCGCACA-CCCCCCGACCCCCCCGATCGTCAAAACCCTAATGCCGTCGGTCAGGTTCT
583 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-CAT--G-CAGG-TC-
* * * * * *
18478686 TTGGTGATGCTC-CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGAACATGCTCGAGCC
642 -AGGT-CTCCTCTCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* * * * ** *
18478750 CAGCATGTGCCGCCGCAACCCTTGATTCGGTCTGATCTTAGA-TGGGAATGAACTCCGTATGCTT
705 CAGCATGTGCTGTCACAACCCTCG-GCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTT
* * * *
18478814 AGA-TCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAACGAGCTTGTGGGTGCTCAACC
769 AGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAA-GAGCGTGCGGGCGCTCAGCC
* * *** * * * * *
18478878 GGCCAGAGGGGCGGGTTACATAAGCCGCATATTGGCCAGGTCCCCTTCTGCGTGCTGTCGATCC
832 GGCCAGAGGGGCGGGATGCATAAGCCGGGGATCGACCGGGTCCCCCTCAGCGTGCTGTCGATCC
* * * * *
18478942 TGCTACCGTAACCCTCGGTCTGATCCGATCTTAAACTGGGAATGAACTCTGTATGCTTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
18479007 CAGATGAAACGAGCGGGTGGATGGGCGGGCGAGTGTGGCGGGCACTACGTCGGCCAAAGAGACGG
66 CCGACGAAACGAGC--G-GG--CGG-GTG-GA-CG-GGCGGGCACTACGCCGGCCAGAGAGACGG
* * *
18479072 GATGCA-CAAGTCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTGC-GCA
122 GATG-AGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-CTACA
*
18479135 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
185 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
18479200 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTT
250 CATGGCAAGACGACTC-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTT
18479265 TAAAAGTTTTTT-GGAAGGAGTTTTGG
314 TAAAA-TTTTTTCGGAAGGAGTTTTGG
18479291 TTGGCATGCA
Statistics
Matches: 3444, Mismatches: 403, Indels: 224
0.85 0.10 0.06
Matches are distributed among these distances:
885 3 0.00
886 379 0.11
887 126 0.04
888 133 0.04
889 8 0.00
890 31 0.01
891 10 0.00
892 7 0.00
893 287 0.08
894 7 0.00
895 2 0.00
896 5 0.00
897 260 0.08
898 80 0.02
899 5 0.00
900 61 0.02
901 1 0.00
902 6 0.00
903 1 0.00
904 18 0.01
905 550 0.16
906 145 0.04
907 13 0.00
908 1 0.00
909 67 0.02
910 4 0.00
911 1 0.00
912 1 0.00
913 216 0.06
914 7 0.00
915 2 0.00
917 1 0.00
918 74 0.02
919 672 0.20
920 5 0.00
921 221 0.06
922 12 0.00
924 1 0.00
925 2 0.00
926 2 0.00
928 2 0.00
931 1 0.00
933 1 0.00
936 1 0.00
938 12 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGTGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGAGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCATGCAGGTCAGGTCTCCT
CTCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GTCACAACCCTCGGCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
GATGCATAAGCCGGGGATCGACCGGGTCCCCCTCAGCGTGCTGTCGATCC
Found at i:18476847 original size:17 final size:17
Alignment explanation
Indices: 18476827--18476861 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
18476817 GCCCCCCCGA
18476827 CCGTCAGAACCCCAATG
1 CCGTCAGAACCCCAATG
*
18476844 CCGTCAGTACCCCAATG
1 CCGTCAGAACCCCAATG
18476861 C
1 C
18476862 ATCAGGTCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.43, G:0.17, T:0.14
Consensus pattern (17 bp):
CCGTCAGAACCCCAATG
Found at i:18478825 original size:26 final size:25
Alignment explanation
Indices: 18478786--18478837 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
18478776 TCGGTCTGAT
18478786 CTTAGATGGGAATGAACTCCGTATG
1 CTTAGATGGGAATGAACTCCGTATG
18478811 CTTAGATCGGGAATGAACTCCGTATG
1 CTTAGAT-GGGAATGAACTCCGTATG
18478837 C
1 C
18478838 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGATGGGAATGAACTCCGTATG
Found at i:18479693 original size:26 final size:26
Alignment explanation
Indices: 18479663--18479715 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18479653 CCGGTCTAAT
18479663 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18479689 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18479715 C
1 C
18479716 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18480231 original size:26 final size:26
Alignment explanation
Indices: 18480202--18480254 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18480192 CCGGTCTGAT
18480202 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18480228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18480254 C
1 C
18480255 CAAAGTCAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18480336 original size:539 final size:539
Alignment explanation
Indices: 18479329--18480349 Score: 1477
Period size: 539 Copynumber: 1.9 Consensus size: 539
18479319 AACTCAAAGA
* *
18479329 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
1 GTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
* * * *
18479394 GCAAACCTGTACAATGTCAAATGCTCTTTAAGGGGCTATGAGTTCTTGAGGTTTGATCAGGGATA
66 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTGATCAGGGATA
* *
18479459 GGGGGCCAATATAAGGGCAAAGTATCAGCACCCATCGCACATATGTGCGCACACCCCCTCGGCCC
131 GGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATATGTGCGCACACCCCCTCAGCCC
* * ** *
18479524 CCCCGATCGTCGCAACCCCAATGCCGCTAGACAGGTTCTCTGATGATACTTTGGCGATGGTGCCC
196 CCCCGATCGTCGCAACCCCAATGCCGCTAGACAAGTTCTCCGATGATACTCCGACGATGGTGCCC
* * * *
18479589 CGACGAAGCAAAATGCGACACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGCTC
261 CGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCACAGCATGTGCTGCCACAACCCTCGCTC
*
18479654 CGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
326 CGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAA
* *
18479719 AGTCAACCCACAAAACGAACTTACGGGCACTCAACCGACCAGAGGGGCAGGATGCGCAAGCCGGG
391 AGTCAACCCACAAAACGAACGTACGGGCACTCAACAGACCAGAGGGGCAGGATGCGCAAGCCGGG
* *** *
18479784 GGTCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGC
456 GATCAACCGGGTCCCCATCTGCGTGCTGCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGC
18479849 TTAGCTAAAAATTTGAAGT
521 TTAGCTAAAAATTTGAAGT
*
18479868 GTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAAACATTTTAATGGCTACTGGCA
1 GTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
* * * ** *
18479933 GCAAACGTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTTTGAGGGATA
66 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTGATCAGGGATA
* * *
18479998 GGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCC-CAGCC
131 GGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACAT-ATGTGCGCACACCCCCTCAGCC
* * * * * * * *
18480062 CCCCCGATCGTCGGAACCCCAATGCTGTTGGTCAAGTTCTCCGGTGATGCTCCGATGATGGTGCC
195 CCCCCGATCGTCGCAACCCCAATGCCGCTAGACAAGTTCTCCGATGATACTCCGACGATGGTGCC
* * * *
18480127 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAGCATGTGCTGTCACAACCCTTGGT
260 CCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCACAGCATGTGCTGCCACAACCCTCGCT
*
18480192 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCA
325 CCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCA
* * * * * * ** ** * * *
18480257 AAGTCAAGCCACGAGATGAGCGTGCGGGCGGTCAGTAGGCCAGAGGGGCGGGATGCGCAAGCTGG
390 AAGTCAACCCACAAAACGAACGTACGGGCACTCAACAGACCAGAGGGGCAGGATGCGCAAGCCGG
18480322 GGATCAACCGGGTCCCCATCTGCGTGCT
455 GGATCAACCGGGTCCCCATCTGCGTGCT
18480350 ACCAATCCTG
Statistics
Matches: 420, Mismatches: 61, Indels: 2
0.87 0.13 0.00
Matches are distributed among these distances:
539 405 0.96
540 15 0.04
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (539 bp):
GTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTGATCAGGGATA
GGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATATGTGCGCACACCCCCTCAGCCC
CCCCGATCGTCGCAACCCCAATGCCGCTAGACAAGTTCTCCGATGATACTCCGACGATGGTGCCC
CGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCACAGCATGTGCTGCCACAACCCTCGCTC
CGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAA
AGTCAACCCACAAAACGAACGTACGGGCACTCAACAGACCAGAGGGGCAGGATGCGCAAGCCGGG
GATCAACCGGGTCCCCATCTGCGTGCTGCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGC
TTAGCTAAAAATTTGAAGT
Found at i:18481129 original size:26 final size:26
Alignment explanation
Indices: 18481094--18481151 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
18481084 TTAGTCCGGT
18481094 CCTAT-CTTAGACTGGGAATGAACTC
1 CCTATGCTTAGACTGGGAATGAACTC
*
18481119 CCTATGCTTAGACTGGGACTGAACTC
1 CCTATGCTTAGACTGGGAATGAACTC
*
18481145 CGTATGC
1 CCTATGC
18481152 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 5 0.17
26 25 0.83
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
CCTATGCTTAGACTGGGAATGAACTC
Found at i:18481816 original size:905 final size:894
Alignment explanation
Indices: 18479851--18482924 Score: 4188
Period size: 904 Copynumber: 3.4 Consensus size: 894
18479841 CCGTATGCTT
* * * * *
18479851 AGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAAACAT
1 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
18479916 TTTAATGGCTACTGGCAGCAAACGTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
66 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
** *
18479981 AGGTTTTTTGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATGTG
131 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * ** * *
18480046 CGCACACCG-CCCAGCCCCCCCGATCGTCGGAACCCCAATGCTGTTGGTCAAGTTCTCCGGTGAT
196 CGCACACCGCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGAT
* *
18480110 GCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAGCATGTG
261 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * **
18480175 CTGTCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
326 CTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * * *
18480240 ATGAACTCCGTATGCCAAAGTCAAGCCACGAGATGAGCGTGCGGGCGGTCAGTAGGCCAGAGGGG
391 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGG
* * * * *
18480305 CGGGATGCGCAAGCTGGGGATCAACCGGGTCCCCATCTGCGTGCTACCAATCCTGCTACCGCAAA
456 CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCT-GCAATCCTGCTACCGCAAC
** * * ** * * * *
18480370 CCTCGGTCCAGTCCAATCTTAGATTGGGAATTAACTCCGTATGCCTAAGCCAACTGATGAAACGA
520 CCTCTATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * *
18480435 GCGGACGGGCAGGCACTATGTCGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGG
585 GCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
18480500 CAGGTGGGTTTAAGG-ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATC
650 TAGGTGGGTTT-AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* *
18480564 CATACAATGGTCCCCTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
714 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* * * * *
18480629 ACGATTTTCAAAACCTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGACTTTTGGCCCC
779 ATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * *
18480694 AAACTTGGTAGACATGATCTTTGTATTTTTTCTGGCATGCACAAAAAAATTC
844 AAACTTGGTAGACGTGATCCTTGTATTTTGT-TGGCATGCAAAAAAAAATTC
* * *
18480746 AGCTAAAAACTCGAAGTGTACAAGATTCTGTGGCCATTTGAAAAAAGTATCCCCATTTCAGACAC
1 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
** *
18480811 TTTAATGGCTACTGATAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
66 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
**
18480876 AATTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAAGTACCAGCACCCATCGCACATCATGT
131 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATCATGT
* * *** * *
18480941 GCGCACACCACCCTGAAACCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATTA
195 GCGCACACCGCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGA
* * * * *
18481006 TGCTCCAACGATCGTGCCCC-AGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGTATG
260 TGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
18481070 TGCTGCTGCAACCCTTAGTCCGGTCCT-ATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTG
324 TGCTGCCGCAACCCTCAGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * *
18481134 GGACTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTTAGCCGGCCAGAG
388 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAG
* * * * *
18481199 GGGCGGGATGCGTAAACCGAGGATCGACTGGGTCCCCCTCTACGTGCTGTCAATCCTAG-TACCG
453 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTG-CAATCCT-GCTACCG
* *
18481263 CAACCCTCTATTCGGTCTGATCTTATACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAA
516 CAACCCTCTATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
18481328 ACGAGCGCGCGGGCGGGCGTGCGGGCACTACGTCGACCAGAGAGACGGGACGCGCAAGCCGTGGA
581 ACGA----GCGGGC--G-G-GCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
18481393 TCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
638 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* * * *
18481458 ACTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACACGTT
703 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
*
18481523 TTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGA
768 TTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* *
18481588 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGTATTCAAAAAAAAATTC
833 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCAAAAAAAAATTC
* *
18481650 AGCTAAAAACTTGAAGTGTACAAGAATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
1 AGCTAAAAACTCGAAGTGTACAAG-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
18481715 CTTTAATGGCTACTGGCTGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
65 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
18481780 GAGGTTTGATGAGGGATAGGGGGCTAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
130 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * * *
18481845 GTGCACACCGCCCCGGTCCCCCCGATCACCAGAACCTCATTGCCGCCGTTCAGGTTCTTCGATGA
195 GCGCACACCGCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGA
** * * * * * * *
18481910 TATTTCGGCGATGGTGGCCCGGCGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCTGCATGT
260 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
18481975 GCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAAATCCGTATGCTTAGACTGGG
325 GCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
18482040 AATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGCGTGCGGGCGCTCAGTCGGCCAGAGG
390 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAA-CGTGCGGGCGCTCAGTCGGCCAGAGG
** * * * * *
18482104 GGTAGGATGGGCAAGCCGGGGGTCGTCCGGGTCCCCCTCTGTGTGCTGCTGATCCTGCTACCGCA
454 GGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGC-AATCCTGCTACCGCA
* **
18482169 ACCCT-TAGTCTGGTCTGATCTTAGACTATGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
518 ACCCTCTATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
18482233 CGAGCGGGCGGGAGGGCACTACG-CCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGGTAGG
582 CGAGCGGGCGGGCGGGCACTACGTCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * ** * *
18482297 GTGGTAGGTGGGTTTAGGCATAACTTCATATTTCTGCATGAAAATGTCATTTTTATGGCTTTTAA
646 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * * * *
18482362 ATTCATGCAACGGTCCCTTAAGCCTCCACGTCAAGTTTCATGGCAAGACGACTCATTTTTTATTT
711 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
** * * * *
18482427 TTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGCGTTTTGGC
776 TTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
18482492 ACTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAATTC
841 CCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCAAAAAAAAATTC
* * *
18482546 AGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCTCATTTCGGACAC
1 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
18482611 TTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGTTGTGAGTTCTTG
66 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
18482676 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTG
131 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * *
18482741 TGCACACC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCATCGATCAGGTTCTCCGACGAT
196 CGCACACCGCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGAT
* * * *
18482805 GCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGGCTGAGCCCAGCATGTG
261 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
18482870 CTACCGCAACCCTCAGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
326 CTGCCGCAACCCTCA-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
18482925 CTAAGCCAAC
Statistics
Matches: 1909, Mismatches: 245, Indels: 50
0.87 0.11 0.02
Matches are distributed among these distances:
894 115 0.06
895 351 0.18
896 314 0.16
897 330 0.17
898 4 0.00
900 6 0.00
901 5 0.00
903 10 0.01
904 392 0.21
905 382 0.20
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCGCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCAATCCTGCTACCGCAACC
CTCTATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
CGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAT
GATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCAAAAAAAAATTC
Found at i:18482033 original size:26 final size:26
Alignment explanation
Indices: 18481996--18482055 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
18481986 CCTCGGTCCG
18481996 ATCCG-AT-CTTAGACTAGGAATGAA
1 ATCCGTATGCTTAGACTAGGAATGAA
*
18482020 ATCCGTATGCTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTAGGAATGAA
*
18482046 CTCCGTATGC
1 ATCCGTATGC
18482056 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 25 0.78
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTAGGAATGAA
Found at i:18483651 original size:26 final size:26
Alignment explanation
Indices: 18483611--18483663 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18483601 CCAGTCTGAT
*
18483611 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
18483637 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18483663 C
1 C
18483664 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18484551 original size:26 final size:26
Alignment explanation
Indices: 18484515--18484567 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18484505 CCGATCTGAT
*
18484515 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCAGATG
18484541 CTTAGACTGGGAATGAACTCCAGATG
1 CTTAGACTGGGAATGAACTCCAGATG
18484567 C
1 C
18484568 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCAGATG
Found at i:18485449 original size:26 final size:26
Alignment explanation
Indices: 18485410--18485481 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
18485400 CCCGTCCGAT
18485410 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18485436 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18485462 CTTAGATTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
18485482 GTATGCCTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18487429 original size:902 final size:897
Alignment explanation
Indices: 18482897--18489165 Score: 7480
Period size: 902 Copynumber: 6.9 Consensus size: 897
18482887 TCCGGTCTGA
* * *
18482897 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAAGAAACGAGCGGGCGGGCGGGCAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
* * *
18482962 GTACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATC-AGTAGGGTGGTAGGTGGGTTT
66 GCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGGTGGGTTT
* * *
18483026 AGGCACATCTTCATATTTCTGTGTTCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTC
130 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
18483091 CCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTC-TTTTCTATTTTTCACGATTTTTAAA
195 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
** * * * * * *
18483155 ACTTTTTGCGGTTCAAAATTTTTTAAAATTTTTTCAGTAGGAATTTTGGTCCCAAACTTGGTAGA
260 ACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGA
** * * * * *
18483220 TGTGATCCTTGTATTTTTGTTGACATGCATAAAACATTTCAGCTGAAAACTCGAAGTGTACAAGA
325 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
18483285 -TTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
18483349 GTAAAATCTCAAATGTTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
18483414 ATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
520 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
* * *
18483479 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCGGACGATGGTGCCTCGACGAA
584 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
* * * * *
18483544 GAAAAATGCAGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTG
649 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCG
*
18483609 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACT-TCGTATGCCTAAGTCAA
714 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAAATGAACTCT-GTATGCCTAAGTCAA
* *
18483673 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
778 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAG-CGGGGATCGG
* **** *
18483738 TCGGGTCCCCCTCTACGTGCTGTCT-ATCTTGCTGTTGTAACCC-CTTGTCTGGTC-T
842 TCGGGTCCCCCTCTACGTGCTG-CTGATCCTGCTGCCACAACCCTC-GGTCTGGTCAT
* *
18483793 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGGACGTGCGGGC
1 --TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGGCGGGC
* * * * *
18483858 GGGCGGGCTCTACGCCGGCCATAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTG
60 GGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* ** *
18483923 GATTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGCAAATTCATACAA
125 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
18483988 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
190 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
* * * *
18484053 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGTAGTTTTGGCCCCAAACTTG
255 TTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTG
* * * *
18484118 GTAGACATGATCCATATATTTTTGTTGGCATGCACAAAAAACTTCAACTAAAAACTCGAAGTGTA
320 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
18484183 CAAGATTTTGTGACCATCTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCA
385 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
18484248 AAACTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGG
450 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
18484313 GGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGCCCCT
515 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC
* * * * * *
18484378 CCGATCGTCGGAACCCCAATGCTGCCGGTAAGGTTCTCCGACGATGCTCC-AGCGATGGTACCCT
579 CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCC
* * * *
18484442 GGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTCCCGCAACCCTCGATCC
643 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCC
* * * *
18484507 GATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCAG-ATGCCTA
708 GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAAATGAACT-CTGTATGCCTA
* *
18484571 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGG
772 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGC-GGG
* * *
18484636 GATCGGTC-GGT-CCCCTCTACGTGCTACTGATCCTGATGCC-CTAACCCTCGGTCTGGTCCAA
836 GATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCAC-AACCCTCGGTCTGGT-CAT
* **
18484697 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGTGGGCAA
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
* *
18484758 GCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTA
66 GCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
18484823 GGCACATCTTCACACTTT-TGCGTGCCACTGCCATTTTTATGG-TTGTAAATTCATACAATGGTC
131 GGCACATCTTCATA-TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
** *
18484886 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCATGATTTTTGAA
195 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
* * *
18484951 ACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTGGAAGGAG-TTTCGCCCCAAACTT-GTAGA
260 ACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGA
* * * * *
18485014 CGTGATCGTTG--TTTTT-TTGTCATGTCAAAAAAAAATTCAGCTTAAAAACTCGAAGTATACAA
325 CATGATCCTTGTATTTTTGTTGGCATG-CACAAAAAAATTCAGC-TAAAAACTCGAAGTGTACAA
*
18485076 -A-TTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTGGCAGTAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
** * * *
18485138 CCATAAAATCTCAAATCGCTCTTTTTAGGGGGGTTGTGAGTTCTCGAGGTTTGACGGGGGGATAA
453 CTGTAAAATCTCAAAT-GCTC--TTTAAGGGGG-TGTGAGTTCTCGAGGTTTGA-TGAGGGAT-A
*
18485203 GGGTGCCAATATAAGGGCCGACAGTACCAGCACCCATCGCACATCATTGTG-GCAACACCCCCC-
512 GGGGGCCAATATAAGGGCC-A-AGTACCAGCACCCATCGCACATCA-TGTGCGC-ACACCCCCCG
* ** * ** *
18485266 GACCCCTTGATCGTCGGAACCCCAATTG-CATCGGTCAGGTTCTCCAGCGATGCTCCTGACGATG
573 GCCCCCCCGATCGCCGGAACCCCAA-TGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-GACGATG
* * * *
18485330 GTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCC
636 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
*
18485395 TCGGTCCCGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCGTA
701 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT--G---GAA------A
* * * * *
18485460 TGCTTAGATTGGGAATGAACTCGTATGCCTAAGTTAACCAATGAAACGAGCGTACGGGCGCTCAG
755 ----T-GA-----ACT---CT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
18485525 CCGACCAGAGGGGCGGGATGCGTAAGCCGAGGATCAGCCGGGTCCCCCTCTCCGTGTTGCCGATC
806 CCGGCCAGAGGGGCGAGATGCGCAAG-CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATC
* * * *
18485590 CTGCTGCTAGAACCCTCGGTCCGATCCGA-
870 CTGCTGCCACAACCCTCGGTCTGGT-C-AT
* * * * *
18485619 TCCTAGACTGCGAATGAACTCTGCATGCCTAAGCCAATCGACGAAACGAGTGGACGGGCGGGCGG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGGCGGGCGG
* * * *
18485684 GTGGTCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGG
62 GCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
18485749 TTTAGGCACATTTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
127 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
18485814 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT
192 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT
* **
18485879 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA-TTTTCAGCAACAAACTTGG
257 GAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-AGCCCCAAACTTGG
* ** * *
18485943 TAGACATGATGCTTGTATTTTTGTTGGCATGTGCAAAACAATTCAACTAAAAACTCGAAGTGTAC
321 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
18486008 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAA
386 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* ** *
18486073 ACCTATAAAATCTCAAATGCTCTTTAAGGATGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
451 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
18486138 CCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCCGG-CCCCCC
516 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * * * * * * *
18486202 GATCGCTGGAACTCCAATGCCACCGATCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCCGAT
581 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* * *
18486267 GAAGAAAAATACGGCACCAACAGATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGT
646 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGT
** * *
18486332 CCGATCTTAGACTGATAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATACCTAAGTC
711 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAAATGAACTCTGTATGCCTAAGTC
* * * * *
18486397 AACCCACGAAACGAACGTGCAGGCGCACAGCCGACCAGAGGGGC-AGGATGCGCAAGCCGAGGAT
776 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAG-CGGGGAT
* * * * * * *
18486461 TGG-CTGGGTCCCACTCTGCATGCTGC-CATTCCTGCTACCACAACCCTCGGTCCGGTC-T
839 CGGTC-GGGTCCCCCTCTACGTGCTGCTGA-TCCTGCTGCCACAACCCTCGGTCTGGTCAT
* * * * *
18486519 GATCTTAGACTGGGAATGAACTGCGTATACCTAAGCCAACCGACAAAATGAGCAGGTGGGTGGGC
1 --TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGC
* * *
18486584 GGGTGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTG
60 GGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * * * * *
18486649 GGATTAGGCAAATCTTCATATTTCTGCATGCCAATTCTAGTTTTATGGGTTGTAAATTCATACAA
125 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
18486714 TGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
190 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
** * * * * *
18486779 TCAAAACTTTTTACGATTTGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTAGCGCCAACCTTG
255 TTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTG
* * **
18486844 GTAGACGTGATCCTTGTTATTTTT-TTGGCATGCATAAAAAAATTTTGCTAAAAACTCGAAGTGT
320 GTAGACATGATCCTTG-TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
18486908 ACAAGATTTTGTGACCATTTGAAAAAAATGTCCACATTTCATACACTTTAATGGCTACTGGCAGC
384 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
18486973 AAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGG
449 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
** * * * * * *
18487038 GGGCCAATATAATTGCCAAGTGCCAGTAGCCATCACACATCATGTACGTACACCCCCCGGGCCCC
514 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCC
* * ** * * *
18487103 CCCGATCTCCAGAACCCCAATGCCGCCGGTTTGGTTCTTCGACGATGCTCCGACGATGGTGCGCC
578 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* * *
18487168 GA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGATGCCGCAACCCTTGGTCC
643 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCC
* * *
18487232 AGTCCGATCTTAGAATGGGGATGAACTCCATATGCTTAGACTGGAAATGAACTCTGTATGCCTAA
708 GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAAATGAACTCTGTATGCCTAA
* * *
18487297 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATCCGTAAGTCAGGG
773 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAG-CGGGG
* * *
18487362 ATCGGTCGGGTCCCCCTTTGCGTGCTGCTGATCCTGCTGCCACAACCCTCAGTCTGGTCAT
837 ATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCTGGTCAT
* * * * * * *
18487423 TCTTAGAATAGGAGTGCACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGCGGGCGA
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
** * *
18487488 G--CTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGTGTGGTAGGTGGGTTTA
66 GCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
18487551 GGCACATCTTCATATTTCTTCATCCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCC
131 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
18487616 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATCTTCGAAA
196 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
* * * *
18487681 CTTTTTGTGGTTT-AGAATTTTTCAAAAATTTTTT-GGAAAGAGTTCTAGCCCCAAACTTGGTAG
261 CTTTTTGCGGTTTGAG-ATTTTT-TAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAG
* * * *
18487744 ACATGATCCTTGTATTTTTTTTTGCATGCA-AAAAAAAATCAGCTAAAAATTCGAAGTGTACAAG
324 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* ***
18487808 GTTTTGTGACCATTTGAAAAAAGTGTCTTGATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
389 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* ** *
18487873 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTTTTGTGGGATAGGGGGCC
454 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
18487938 AATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
519 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * * * *
18488003 CACCAGAACTCTAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAACGAA
584 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
* * * * *
18488068 GAAAAATACGACAGCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCA
649 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCG
* *
18488133 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGG
714 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAAATGAACTCTGTATGC-----C----
* *
18488198 AATGAACTCCGTATACCTAAGTTAACCCACGAAACGAGCATGCGGGCGATCAGCCGGCCAGAGGG
770 --T-AA----G--T--C------AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* ** * * * * **
18488263 GC-AGAAAGCGCAAGCTGGGGATCGACCGAGTCCCACTCTCTA--TGCTACCGATCCTACTGCTG
818 GCGAG-ATGCGCAAGC-GGGGATCGGTCGGGTCCC-C-CTCTACGTGCTGCTGATCCTGCTGCCA
** **
18488325 CAACCCTCAATCCAGTC-T
879 CAACCCTCGGTCTGGTCAT
** * *
18488343 GATCTTAGACTTCGAATGAACACCGTA----T--G------G-TG----GA-------------C
1 --TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * ** * * *
18488378 GGTCACTATACCGATCAGAGAGAGGGGATGCACAAGCCGTGGATCGATAGGGTGGTGGGTGGGTT
64 GGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
18488443 TAGCCACATCTTCATATTTCTGCATGCCAATGCCAATTTTATGGCTCGTAAATTCATACAAT-GT
129 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
18488507 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATATTTCACGATTTTTGA
194 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGA
* * * * ** *
18488572 AACTTTTTGCTG-TTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCAACAAACTTGGCA
259 AACTTTTTGCGGTTTGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTA
*
18488636 GACATGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
323 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
18488701 GATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
18488766 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * *
18488831 CAATATAAGGGCCAAGTACTAGCACCCATCGGACATCTTGTGCGCACACCCCCCCGACCCCACCG
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCG
* ** * * *
18488896 ATCGCCAGAAATCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCC-AGC
582 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-C
* *
18488960 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGT
646 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGT
** * *
18489025 CTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG-AATGAACTCCGTATGCCTAAGT
711 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAAATGAACTCTGTATGCCTAAGT
* * * * *
18489089 CAACCCACGAAACGAGCATGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGATC
775 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCGGGGATC
**
18489154 GACCGGGTCCCC
840 GGTCGGGTCCCC
18489166 TATGCGAAAC
Statistics
Matches: 4662, Mismatches: 561, Indels: 327
0.84 0.10 0.06
Matches are distributed among these distances:
867 1 0.00
868 16 0.00
869 50 0.01
870 1 0.00
875 1 0.00
877 1 0.00
879 1 0.00
883 2 0.00
884 1 0.00
887 40 0.01
888 41 0.01
889 19 0.00
890 29 0.01
891 32 0.01
892 33 0.01
893 266 0.06
894 509 0.11
895 636 0.14
896 242 0.05
897 10 0.00
898 60 0.01
899 1 0.00
900 3 0.00
901 6 0.00
902 888 0.19
903 376 0.08
904 473 0.10
905 3 0.00
906 4 0.00
907 2 0.00
909 1 0.00
910 2 0.00
911 5 0.00
912 1 0.00
913 1 0.00
915 1 0.00
916 4 0.00
918 2 0.00
919 1 0.00
920 74 0.02
921 95 0.02
922 104 0.02
923 4 0.00
925 1 0.00
927 115 0.02
928 54 0.01
929 29 0.01
930 103 0.02
931 143 0.03
932 15 0.00
933 32 0.01
934 26 0.01
935 17 0.00
936 43 0.01
937 42 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
GCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
CTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGAC
ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGAT
CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAAATGAACTCTGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCGGGGATCGGTCGG
GTCCCCCTCTACGTGCTGCTGATCCTGCTGCCACAACCCTCGGTCTGGTCAT
Found at i:18488164 original size:26 final size:26
Alignment explanation
Indices: 18488135--18488211 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
18488125 CCGGTCCAAT
18488135 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18488161 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18488187 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18488212 ACCTAAGTTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18488825 original size:894 final size:904
Alignment explanation
Indices: 18486337--18489082 Score: 2946
Period size: 895 Copynumber: 3.0 Consensus size: 904
18486327 CCGGTCCGAT
** * * *
18486337 CTTAGACTGATAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATACCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * * *
18486402 ACGAAACGAACGTGCAGGCGCACAGCCGACCAGAGGGGCAGGATGCGCAAGCCGAGGATTGGCTG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
* **
18486467 GGTCCCACTCTGCATGCTGCC-ATTCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTG
131 GGTCCC-CTCTGCATGCTGCCGA-TCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACT-
* * * *
18486531 GGAAT-GAACTGCGTATACCTAAGCCAACCGACAAAATGAGCAGGTGGGTGGGCGGGTGGGCACT
193 ----TCGAA-T--G-----C-AA-CCAACCG--ATAGT-AG-A-GT--G-GAGCGGGT-CG-ACT
* * * * *
18486595 ACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGATTAGGCAA
234 ATACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * * *
18486660 ATCTTCATATTTCTGCATGCCAATTCTAGTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAA
299 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * **
18486725 GCCTTCACGTGGAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTT
364 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * * * *
18486790 TACGATT-TGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTAGCGCCAACCTTGGTAGACGTGA
429 TGCGGTTCAGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGA
* **
18486854 TCCTTGTTATTTTT-TTGGCATGCATAAAAAAATTTTGCTAAAAACTCGAAGTGTACAAGATTTT
494 TCCTTG-TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
18486918 GTGACCATTTGAAAAAAATGTCCACATTTCATACACTTTAATGGCTACTGGCAGCAAACCTGTAA
558 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
18486983 AATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAATAT
623 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
** * * * * * * *
18487048 AATTGCCAAGTGCCAGTAGCCATCACACATCATGTACGTACACCCCCCGGGCCCCCCCGATCTCC
688 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGCC
* ** * * *
18487113 AGAACCCCAATGCCGCCGGTTTGGTTCTTCGACGATGCTCCGACGATGGTGCGCCGA-GAAGAAA
752 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* *
18487177 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGATGCCGCAACCCT---T---G---G-TC-
817 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCT
18487231 ----C----A-G---TCCG-AT-
882 TAGACTGGGATGAACTCCGTATG
* * * * *
18487240 CTTAGAATGGGGATGAACTCCATATGCTTAGACTGGAAATGAACTCTGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * **
18487305 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATCCGTAAGTCAGGGATCGGTCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
* * * ** * * * *
18487370 GGTCCCCCTTTGCGTGCTGCTGATCCTGCTGCCACAACCCTCAGTCTGGTC--ATTCTTAGAATA
131 GGT-CCCCTCTGCATGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGA-TCTTAGACTT
* * * * * *
18487433 GGAGTGCACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGCGGG-CGAGCTATGCCG
194 CGAATGCA------A--CC-AA-CCGA-T-A-G-TA-GAGTGGA---GCGGGTCGA-CTATACCG
* *
18487497 GCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGTGTGGTAGGTGGGTTTAGGCACATCTTC
240 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
18487562 ATATTTCTTCATCCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTC
305 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
18487627 ACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATCTTCGAAACTTTTTGTGGT
370 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
* * * *
18487692 TTAGA-ATTTTTCAAAAATTTTTT-GGAAAGAGTTCTAGCCCCAAACTTGGTAGACATGATCCTT
435 TCAGAGATTTTT-TAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTT
* * * * *
18487755 GTATTTTTTTTTGCATGCA-AAAAAAAATCAGCTAAAAATTCGAAGTGTACAAGGTTTTGTGACC
499 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
***
18487819 ATTTGAAAAAAGTGTCTTGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
564 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* ** *
18487884 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTTTTGTGGGATAGGGGGCCAATATAAGGGC
629 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
18487949 CAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCAGAACTC
694 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCC
* * * * * *
18488014 TAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGA
759 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * *
18488079 CAGCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCAATCTTAGACTG
824 CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
18488144 GGAATGAACTCCGTATG
889 GG-ATGAACTCCGTATG
* * *
18488161 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTTAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
18488226 ACGAAACGAGCATGCGGGCGATCAGCCGGCCAGAGGGGCAGAAAGCGCAAGCTGGGGATCGACCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
* * * ** *
18488291 AGTCCCACTCT-CTATGCTACCGATCCTACTGCTGCAACCCTCAATCCAGTCTGATCTTAGACTT
131 GGTCCC-CTCTGC-ATGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTT
** * *
18488355 CGAATG-AA-C-ACCG-TA-T-G-GTGGA-C-GGTC-ACTATACCGATCAGAGAGAGGGGATGCA
194 CGAATGCAACCAACCGATAGTAGAGTGGAGCGGGTCGACTATACCGGCCAGAGAGACGGGATGCG
* * *
18488410 CAAGCCGTGGATCGATAGGGTGGTGGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATG
259 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* *
18488475 CCAATTTTATGGCTCGTAAATTCATACAAT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
324 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
18488539 GACTACTCGTTTTCTATATTTCACGATTTTTGAAACTTTTTGCTGTTCAG-GATTTTTTAAAATT
389 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGAGATTTTTTAAAATT
* * ** * *
18488603 TTTTCAGAAGGAGTTTTGGCAACAAACTTGGCAGACATGATCCTTATATTTTTGTTGGCATGCAC
454 TTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
*
18488668 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCA
519 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
18488733 TTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
584 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
18488798 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGG
649 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * ** *
18488863 ACATCTTGTGCGCACACCCCCCCGACCCCACCGATCGCCAGAAATCCAATGCCGCTGGTCAGGTT
714 ACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
18488928 CTCCGGCGATGCTCTGGCGATGGTGCCCC-AGCGAAGAAAAATGTGGCACCAGCACATGCCCGAG
778 CTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* **
18488992 CCCAGCATGTGCTACCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
842 CCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG-ATGAACTCCGTATG
*
18489056 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18489083 CTAAGTCAAC
Statistics
Matches: 1563, Mismatches: 218, Indels: 132
0.82 0.11 0.07
Matches are distributed among these distances:
889 1 0.00
890 1 0.00
892 10 0.01
893 131 0.08
894 364 0.23
895 440 0.28
896 240 0.15
897 14 0.01
898 12 0.01
899 2 0.00
900 5 0.00
901 3 0.00
902 8 0.01
903 149 0.10
904 4 0.00
905 2 0.00
906 1 0.00
907 1 0.00
909 2 0.00
910 2 0.00
912 1 0.00
915 2 0.00
916 1 0.00
919 4 0.00
920 6 0.00
921 144 0.09
922 12 0.01
923 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (904 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
GGTCCCCTCTGCATGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTTCG
AATGCAACCAACCGATAGTAGAGTGGAGCGGGTCGACTATACCGGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGAGATTTTTTAAAATTTT
TTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
GCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGATGAACTCCGTATG
Found at i:18489059 original size:26 final size:26
Alignment explanation
Indices: 18489030--18489082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18489020 CCGGTCTAAT
*
18489030 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18489056 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18489082 C
1 C
18489083 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18489879 original size:26 final size:26
Alignment explanation
Indices: 18489841--18489891 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18489831 GGTCTGACCA
*
18489841 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGAAATGAACTCCATATGCT
18489867 TAGACTGGAAATGAACTCCATATGC
1 TAGACTGGAAATGAACTCCATATGC
18489892 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCATATGCT
Found at i:18491046 original size:26 final size:26
Alignment explanation
Indices: 18490995--18491047 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18490985 CCGATCCGAT
*
18490995 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18491021 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18491047 C
1 C
18491048 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18491461 original size:26 final size:24
Alignment explanation
Indices: 18491432--18491490 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 24
18491422 TATTTTTTAC
* *
18491432 GATTTTTGAAACTTTTTACGGTTCAG
1 GATTTTTGAAAATTTTTACGG--AAG
* *
18491458 GATTTTTTAAAATTTTTTCGGAAG
1 GATTTTTGAAAATTTTTACGGAAG
18491482 GATTTTTGA
1 GATTTTTGA
18491491 CCCCAAACTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 10 0.36
26 18 0.64
ACGTcount: A:0.25, C:0.07, G:0.19, T:0.49
Consensus pattern (24 bp):
GATTTTTGAAAATTTTTACGGAAG
Found at i:18492786 original size:26 final size:26
Alignment explanation
Indices: 18492750--18492802 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18492740 CCAATCTGAT
*
18492750 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18492776 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18492802 C
1 C
18492803 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18493183 original size:878 final size:876
Alignment explanation
Indices: 18490904--18493677 Score: 3396
Period size: 877 Copynumber: 3.1 Consensus size: 876
18490894 TAGTCAGGTT
* * * * *
18490904 CTCCGACGATGGTGCCCTGACGAAGAAAAATAG-GGCACCAATACATGCTCGAGCCCAGCATGTG
1 CTCCAACGATGGTGCCCCGATGAAGAAAAAT-GCGGCACCAACACATGCCCGAGCCCAGCATGTG
* * * * * *
18490968 CTGTCGCAAGCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGA
65 CTG-CGCAA-CCTCAG-CCCATCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
18491033 ATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGTGTGCGGGCGGTCAACCGGCCAGAGGGG
127 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAACCGGCCAGAGGGG
* * ** * * * *
18491098 TGGGATGCGCAAGCCAGGGATTGGCCGGGACCCCCTCTGCATCTTGTCGATCCTGCTACCGTAAC
192 CGGGATG-GGAAGCTGGGGATCGG-CGGG-TCCCCTCTGCGTCTTGTCGATCCTGCTACCGCAAC
* ** *
18491163 CCTCAGTCCGGTCTAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAACG-AACGA
254 CCTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
18491227 GCGGGCGGGTGGGGGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGA
319 GC-GGCGGGCGGGGGGGCGGGCACTAC-TCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
18491292 TAGGGTGGCAGGTGGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
382 TAGGGTGGTAGGT-GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
* * *
18491357 TGCAAATTCATACAATGGTCCCGTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCATTTTC
446 TGTAAATTCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
*
18491422 TATTTTTTACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTT
511 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTT
* * *
18491487 TTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAACAATTCAGCTA
576 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTA
*
18491552 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAAACACTTTAA
641 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAA
* * *
18491617 CGGCTACTGGCAGCAAACCTATAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCGAGGTT
706 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
18491682 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATATG-ACATCATGTGCGCA
771 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-CGCACATCATGTGCGCA
*
18491746 CACCCCCTGGCCCCTCTAATCATCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGGTGATG
835 CA---------CCC-C-AA-CATCG--A-CC-AA--CCG-CGGTCAGGTTCTCCGGCGATG
* * *
18491807 CTCCAATGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCGCGAGCCCAACATGTGC
1 CTCCAACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
* * * *
18491872 T--GCTA--TGA-CCC-T-TG------G-TT-CG---G---TCCG-AT-CTTTGACTGGGAATGA
66 TGCGCAACCTCAGCCCATCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* **
18491914 ACTCTGTATGCCTAAGTCAACCCACGAAA-TGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGG
131 ACTCCGTATGCCTAAGTCAACCCACGAAACT-AGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGG
* * * * *
18491978 GATGCGCAGATCGGGGATCAGCTGAGTCGCCCTCTGCGTGC-TGTCGATCCTGCTACCGCAACCC
195 GATGGGAAGCT-GGGGATCGGC-GGGTC-CCCTCTGCGT-CTTGTCGATCCTGCTACCGCAACCC
* *
18492042 TC-GATCTAGTTCGATCTTAG-TCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
256 TCAG-TCTGGTCCGATCTTAGAT-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * *
18492105 GCGGTTGGACGGGCGGGCGGGCACTACGCCGACCAAAGAGACAGGATGCGCAAGCCGTGGATCGA
319 GCGG-CGGGCGGGGGGGCGGGCACTACTCAG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
18492170 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
382 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
18492235 GTAAATTCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
447 GTAAATTCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * ** * *
18492300 ATTTTTCATGATTTTTGAAA-TGTTTTACGATTTGGGATTTTTCAAAATTTTTTCGGAAGGCTTT
512 ATTTTTCACGATTTTTGAAACT-TTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTT
* * *
18492364 TTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTAGCATGCACAAAAAAATTCAGCTA
576 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTA
* * * **
18492429 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCATACACAGTAA
641 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAA
18492494 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
706 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
18492559 TGATGAGGGATAGGGGGCCAATATAAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGTA
771 TGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
18492623 CACCCC-A-AT-G-CC-A-C-CGGTCAGGTTCTCCGGGCGATG
835 CACCCCAACATCGACCAACCGCGGTCAGGTTCTCC-GGCGATG
* * * * *
18492659 CTCCAGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACTTGCCCAAGCTCAGCATGTGC
1 CTCCAACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
18492724 TGCCGCAACCCTCAGCCCAATCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAA
66 TG-CGCAA-CCTCAGCCC-ATCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
18492789 TGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCACTCAACCGGCCAAAGGGGC
128 TGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC
* * ** * * * * *
18492854 GGTATGTGGGAGCTGGGGATCGGTCGGGTCCCTCTCTATGTCTTGCCAATCCTACTGCCACAACC
193 GGGATG-GGAAGCTGGGGATCGG-CGGGTCCC-CTCTGCGTCTTGTCGATCCTGCTACCGCAACC
* ** *
18492919 CTCAGTCTGGTCCGATTTTAGATTGTTAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA
255 CTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* *
18492984 CTGGCGGGCGGGGGGGCGGGCATTACATCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
320 C-GGCGGGCGGGGGGGCGGGCACTAC-TCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
18493049 AAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
383 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
* *
18493114 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTA
448 TAAATTCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *
18493179 TTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTCTTTCGGAAGGAGTTTT
513 TTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTT
* *
18493244 GGCCCCAAACTGGGTAGATGTGATCCTTGTATTTTTTTTGGCTTGCAC-AAAAAATTCAGCTAAA
578 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAA
* * *
18493308 AACCCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAATG
643 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATG
*
18493373 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTG
708 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
18493438 ATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACAC
773 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
** ** * *
18493503 CCCCGGCCCCCCCGATCGCCGAAACCCCAATACCGCCTATCAGGCTCTCCGACGATG
837 ------CCCCAAC-AT---CG--A--CC-A-ACCG-CGGTCAGGTTCTCCGGCGATG
* ** * * *
18493560 CTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGGCCAGCATGTGC
1 CTCCAACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
* * * * *
18493625 TGCCGCAACCCTCGGTCCGATCTGATCTTATACTAGGAATGAACTCCGTATGC
66 TG-CGCAA-CCTCAG-CCCATCTGATCTTAGATTGGGAATGAACTCCGTATGC
18493678 CTAAGCCAAG
Statistics
Matches: 1618, Mismatches: 175, Indels: 158
0.83 0.09 0.08
Matches are distributed among these distances:
851 14 0.01
852 64 0.04
853 1 0.00
855 3 0.00
856 1 0.00
858 4 0.00
859 3 0.00
861 1 0.00
862 3 0.00
863 2 0.00
865 1 0.00
867 1 0.00
868 4 0.00
869 2 0.00
870 1 0.00
873 1 0.00
876 17 0.01
877 766 0.47
878 513 0.32
879 15 0.01
882 1 0.00
884 4 0.00
885 1 0.00
886 1 0.00
887 3 0.00
891 1 0.00
893 1 0.00
894 1 0.00
895 2 0.00
896 2 0.00
897 1 0.00
899 1 0.00
900 4 0.00
901 107 0.07
902 14 0.01
903 57 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (876 bp):
CTCCAACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
TGCGCAACCTCAGCCCATCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGG
ATGGGAAGCTGGGGATCGGCGGGTCCCCTCTGCGTCTTGTCGATCCTGCTACCGCAACCCTCAGT
CTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGG
GCGGGGGGGCGGGCACTACTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCAACAT
CGACCAACCGCGGTCAGGTTCTCCGGCGATG
Found at i:18494405 original size:26 final size:26
Alignment explanation
Indices: 18494368--18494418 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18494358 CGATCTGATT
*
18494368 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTAGGAATGAACTCCATATGG
*
18494394 TTAGACTAGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCATATG
18494419 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGG
Found at i:18496171 original size:26 final size:27
Alignment explanation
Indices: 18496135--18496188 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
18496125 CAGGTTCAAT
18496135 CTTAGACTGGGAATG-AACTCCGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
18496161 CTTAGACTGGGAATGAAACTCCGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
18496188 C
1 C
18496189 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAACTCCGTATG
Found at i:18497076 original size:26 final size:26
Alignment explanation
Indices: 18497040--18497092 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18497030 CAGGTTCGAT
18497040 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18497066 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18497092 C
1 C
18497093 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18497227 original size:904 final size:898
Alignment explanation
Indices: 18495260--18497443 Score: 3177
Period size: 904 Copynumber: 2.4 Consensus size: 898
18495250 CCATCTGATT
* *
18495260 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTTGAAACGGAGCGTAC-GAGCGCTCAG
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC-GAGCGTACGGA-CACTCAG
* * * * * * *
18495324 CCGGCCAGATGGCCGAGATGCGCAAGCCGGGGATTGGCCGGGCCCCCTCTGTGTGCTGTCGATCT
64 CCGGCCAGAGGGACGGGATGCGCAAGCCGGGGATTGACCGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
18495389 TGCTGTCGTAACCCCTAGT-TCG-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 TGCTGCCGCAACCCTTAGTCTGGTAT--AATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-C
* * * * *
18495452 AACCGATGAAACGAGCGGGAGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGATGGGATGCGC
191 AAACGACGAAA-GA-CGGGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * ** *
18495517 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCATGTCTTCATATTTCTACATGCCAATGC
254 AAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
18495582 CATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18495647 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTT
384 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
18495712 TTCGAAAGGATTTTTAGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAA
449 TTCGAAAGGAGTTTTAGCCACAAACTTGGTAGACATGATCCCTTTACTTTTGTTGGCATGCACAA
18495777 AAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18495842 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTG
579 TCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18495907 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAGTACCAGAACCCATCGTACA
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAGTACCAGAACCCATCGCACA
* *
18495972 TATGTGTGCACACCCCCCCCGGCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCC
709 TAAGTGTGCACACCCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
*
18496037 GGCGATGCTCTGGCGATGGTACCCAGGCAAAGAAAAATGTGACACCAGCACCTGCCCGAGCCCAG
774 GGCGATGCTCTGGCGATGGTACCCAGGCAAAGAAAAATGTGACACCAGCACCTGCCCGAGCCCAA
**
18496102 CATGTGCTGCTGCAACCCTCGATCAGGTTCAATCTTAGACTGGGAATGAACTCCGTATGC
839 CATGTGCTGCCACAACCCTCGATCAGGTTCAATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18496162 TTAGACTGGGAATGAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCCTCAAC
1 TTAGACTGGGAATG-AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGACACTCAGC
* * ** ** * * *
18496227 CGGCCAGTGGAACGGGATGCATAAGTTGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCC
65 CGGCCAGAGGGACGGGATGCGCAAGCCGGGGATTGA-CCGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * * * * * *
18496292 TGCTGCAGCAACCCTCGGTCCGGTCTAATCTTAAACTGGGAATGAACTCGGTAAGCCTAAGTAAA
129 TGCTGCCGCAACCCTTAGTCTGGTATAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAA
* * *
18496357 ACTGACGAAATGACTGGGAGGGCTGGTGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCA
193 AC-GACGAAA-GAC-GGGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * **
18496422 AGCTGTGTATCGAAAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCC
255 AGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
18496487 ATTTTTCTGGCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
18496552 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* ** * *
18496617 TCAGAAA-GAGTTTTGGCCACAAACTTTTTAGACGTGATCCCTTTACTTTTGTTGGCATGTACAA
450 TC-GAAAGGAGTTTTAGCCACAAACTTGGTAGACATGATCCCTTTACTTTTGTTGGCATGCACAA
* *
18496681 AATA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAGGTGTCCCCAT
514 AA-ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18496745 TTTAGACACTTTAACGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
578 TTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
18496810 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGAACCCATCGCA
*
18496875 TATAAGTGTGCACA-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
707 CATAAGTGTGCACACCCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
*
18496939 TCCGGCGATGCTCTGGCGATGGTGCCCAGGCAAAGAAAAATGTGACACCAGCACCTGCCCGAGCC
771 TCCGGCGATGCTCTGGCGATGGTACCCAGGCAAAGAAAAATGTGACACCAGCACCTGCCCGAGCC
*
18497004 CAACATGTGCTGCCACAACCCTCGATCAGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
836 CAACATGTGCTGCCACAACCCTCGATCAGGTTCAATCTTAGACTGGGAATGAACTCCGTATGC
* *
18497067 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGACACTTAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGACACTCAGCC
* * *
18497132 GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATTAACCAGGTCCCCCTCTGCGTGCTGTCGATCCT
66 GGCCAGAGGGACGGGATGCGCAAGCCGGGGATTGACC-GGTCCCCCTCTGCGTGCTGTCGATCCT
* * *
18497197 ACTACCGCAACCCTTAGTCTGGTATAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAT
130 GCTGCCGCAACCCTTAGTCTGGTATAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAAA
* * * *
18497262 CGACG-AA-AC--GA--GCGGGCGGGCAGGCACTACGCTGGCCAGAGAAACGAGATGCGCAAGCC
194 CGACGAAAGACGGGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * **
18497321 GTGAATAGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTGGGCATGCCAATGCCATTT
259 GTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
18497386 TTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCA
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
18497444 GACATTTTAA
Statistics
Matches: 1131, Mismatches: 139, Indels: 31
0.87 0.11 0.02
Matches are distributed among these distances:
895 151 0.13
897 2 0.00
900 2 0.00
902 54 0.05
903 106 0.09
904 602 0.53
905 214 0.19
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (898 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGACACTCAGCC
GGCCAGAGGGACGGGATGCGCAAGCCGGGGATTGACCGGTCCCCCTCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTTAGTCTGGTATAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAACG
ACGAAAGACGGGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTAGCCACAAACTTGGTAGACATGATCCCTTTACTTTTGTTGGCATGCACAAAAACATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAGTACCAGAACCCATCGCACATAAGTGT
GCACACCCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
CTCTGGCGATGGTACCCAGGCAAAGAAAAATGTGACACCAGCACCTGCCCGAGCCCAACATGTGC
TGCCACAACCCTCGATCAGGTTCAATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:18497764 original size:26 final size:26
Alignment explanation
Indices: 18497735--18497787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18497725 CCGGTCTGAT
* *
18497735 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18497761 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18497787 C
1 C
18497788 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18498111 original size:171 final size:171
Alignment explanation
Indices: 18497813--18498140 Score: 428
Period size: 171 Copynumber: 1.9 Consensus size: 171
18497803 GAACGAGCGT
* *
18497813 GCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGTGCAAGCCGGGGATCAACCGGGTCCCCCTCTGC
1 GCGGGCACTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGC
* * * * *
18497878 GTGCTGCCGATCCTACTCCCACAACCCTTGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGT
66 ATGCTGCCGATCCTACTCCCACAACCCTCGGTCTAGTCCAATCTTAGACTGAGAAAGAACTCCGT
18497943 ATGCCTAAGCCAACCAACGAAACGAGCGGGCTGGTGGGCGG
131 ATGCCTAAGCCAACCAACGAAACGAGCGGGCTGGTGGGCGG
* * * **
18497984 GCGGGCACTCAGCCGGCCAGAGGTGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGC
1 GCGGGCACTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGC
* **** *
18498049 ATGCTGCCGATCCT-GTGGTTGCAACCCTCGGT-TCAGTCCAATCTTAGATTG-GAAAAGAACTC
66 ATGCTGCCGATCCTACT-CCCACAACCCTCGGTCT-AGTCCAATCTTAGACTGAG-AAAGAACTC
* *
18498111 CGTATGCCTAAGCCAACCGATGAAACGAGC
128 CGTATGCCTAAGCCAACCAACGAAACGAGC
18498141 AGGCGGGCGG
Statistics
Matches: 134, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
170 3 0.02
171 131 0.98
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (171 bp):
GCGGGCACTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGC
ATGCTGCCGATCCTACTCCCACAACCCTCGGTCTAGTCCAATCTTAGACTGAGAAAGAACTCCGT
ATGCCTAAGCCAACCAACGAAACGAGCGGGCTGGTGGGCGG
Found at i:18499727 original size:26 final size:26
Alignment explanation
Indices: 18499698--18499750 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18499688 CCAGTCCGAT
*
18499698 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18499724 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18499750 C
1 C
18499751 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18500593 original size:904 final size:895
Alignment explanation
Indices: 18497920--18500625 Score: 3651
Period size: 904 Copynumber: 3.0 Consensus size: 895
18497910 CTGGTCCGAT
* *
18497920 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCTGGTGGGCGGG
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA----GC--GT--GCGGG
* * ** * * *
18497985 CGGGCACTCAGCCGGCCAGAGGTGCGGGATGCGCAAGTC-GGGGATCAGTCGGGTCCCCCTCTGC
57 C--G--CTCAGCCGGCCAGAGGGGCAGGATGCGCAACCCAGGGAACCA-TCGGGTCCCCCTCTAC
* ** *** * * * * *
18498049 ATGCTGCCGATCCTG-TGGTTGCAACCCTCGGTTC-AGTC-CAATCTTAGATTGGAAAAGAACTC
117 GTGCCACCGATCCTGCT-ACCGCAACCCTC-GATCAAGTCTGAA-CTTAGACTGGGAATGAACTC
** * * *
18498111 CGTATGCCTAAGCCAACCGATGAAACGAGCAGGC--G-GGC--GGGCATTACACCGGCCAGAGAG
179 CGTATGCCTAAGCCAACCGACAAAACGAACAGGCGGGCGGCGGGGGCACTACGCCGGCCAGAGAG
* * * *
18498171 ACGGGATGCGCAAGTCGTCGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTGTG
244 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTA
* * *
18498236 CGTGCCAGTGCCATTTTTATGGCTTGTAAATTCATATAATGGCCCTTAAGCATTCACGTGAAGTT
309 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTCCCTTAAGC-TTCACGTGAAGTT
* * *
18498301 TCACGGCAAGATGACTCGTTTTCTATTTTTTATGATTTTTGAAA-TCTTTTGCGGTTCGGGATTT
373 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT-TTTTGCGGTTCGGGATTT
* * *
18498365 TTTAAAAATTTTTCGAAAGGATTTTTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTGTT
437 TTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
18498430 GGCATGCATAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAA
502 GGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
18498495 GTGTCCCCATTTCA-AAACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
567 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
18498559 AAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
632 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* ** * *
18498624 ACCCATCAGACATCATGTGTGCACACCTCCCGGCCCCTTCGATTGTCGGAACCCCAATGCCGCCG
697 ACCCA-CAGACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACG
* * * *
18498689 GTCAGGTTGTCTGGCGATGCTCCGGCGATGGTGCCCTGGTGAAGAAAAATGTGGCACCAGCACAT
761 ATCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACAT
* ** * *
18498754 GCAC-AGCCCAGCATGTGCTAGAGCAACCCTT-GGTCTGGTCTGATTTTAGACTGGGAATGAACT
826 GCTCGAGCCCAGCATGTGCTACCGCAA-CCTTCGGTC-CGTCTGATCTTAGACTGGGAATGAACT
18498817 CCATAAG
889 CCATAAG
* *
18498824 CTTAGACTTGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
18498889 GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCCATCGGGTCCCCCTCTACGTGCCACCGATCCT
66 GGCCAGAGGGGCAGGATGCGCAACCCAGGGAACCATCGGGTCCCCCTCTACGTGCCACCGATCCT
* ** * *
18498954 GCTACCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
131 GCTACCGCAACCCTCGATCAAGTCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
18499019 CGACGAAACGAGCAGGCGGGCGGCGGGGGCACTATGCCGGCCAGAGAGGCGGGATGCACAAGCCG
196 CGACAAAACGAACAGGCGGGCGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
18499084 TGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTACGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTACGTGCCAATGCCATTTT
*
18499149 TATGGCTTGCAAATTCATACAATGGTCCCTTAAGCTTCACGTGAAGTTTCATGGCAAGACGACTC
326 TATGGCTTGTAAATTCATACAAT-GTCCCTTAAGCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
18499214 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
390 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA
*
18499279 GGA-TTTTGGCCCCAAACGTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCAATAAAAAAA
455 GGATTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ATAAAAAAA
*
18499343 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAG
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAG
* *
18499408 ACATTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * **
18499473 CTCGAGGTTTGATGAGGGATATGCGGCCAATATAAAGGCCAAGTACCAGCACCCATTGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACAG-ACATCA
* * ** *
18499538 AGTGTGCACACCCTCCGATCCCCCCGATCGCCGGAACCCCAATGCCGACGATCAGGTTCTCTGGC
711 TGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGATCAGGTTCTCTGGC
* * * *
18499603 GATGCTCCGGCGATGGTGCCCTGGCAAAGAAAAATGCGGCACCACCACATGCTTGAGCCTAGCAT
776 GATGCTCCGGCGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCAT
* * * * * *
18499668 GTGCTGCCGTAACCGTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
841 GTGCTACCGCAACCTTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCCATAAG
* *
18499724 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * *
18499789 CGGCCAGAGGGGCAGGATGCGCAACCCGGGGAACGGTCGGGTCCTCCC-CTATGTGCTACCGATC
65 CGGCCAGAGGGGCAGGATGCGCAACCCAGGGAACCATCGGGTCC-CCCTCTACGTGCCACCGATC
*
18499853 CTGCTACTGCAACCCTCGATCAAGTCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTACCGCAACCCTCGATCAAGTCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
18499918 ACCGATAAAATGAACGGGTGGGCGGGGGGTGGGCACTACGTCGGCCAGAGATACGGGATGCGCAA
194 ACCGACAAAACGAACAGGCGGGC-GGCGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
18499983 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGTACATCTTCATATTTCTACATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTACGTGCCAATGCCA
*
18500048 TTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCGTTCACGTGAAGTTTCATAGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAAT-GTCCCTTAAGC-TTCACGTGAAGTTTCATGGCAAGAC
* * *
18500113 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTTGGGATTTTTTAAAATTTTTT
385 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* *
18500178 CGAAAGGATTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
450 CGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
* * * * *
18500243 CAATTCAACTAAAAACTCGAAGTGTACAGGATTTTGTGACCAATTGAAAAAATTGTCCCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18500308 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18500373 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGTACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACAG-ACAT
* * * *
18500438 CTTGTGCGCACACCCACCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGTCGATCAGGTTCTC
709 CATGTGTGCACA-CC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGATCAGGTTCTC
* * * * * *
18500503 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCA
772 TGGCGATGCTCCGGCGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCA
* *
18500568 GCATATGCTACCGCAATCTTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATA
837 GCATGTGCTACCGCAACCTTCGGTCCG-TCTGATCTTAGACTGGGAATGAACTCCATA
18500626 TTTCTACATG
Statistics
Matches: 1593, Mismatches: 181, Indels: 56
0.87 0.10 0.03
Matches are distributed among these distances:
890 3 0.00
891 118 0.07
892 7 0.00
893 2 0.00
894 3 0.00
895 19 0.01
896 237 0.15
897 62 0.04
898 21 0.01
899 223 0.14
900 58 0.04
901 180 0.11
902 155 0.10
903 211 0.13
904 281 0.18
905 13 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCAGGATGCGCAACCCAGGGAACCATCGGGTCCCCCTCTACGTGCCACCGATCCT
GCTACCGCAACCCTCGATCAAGTCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACAAAACGAACAGGCGGGCGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTACGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGTCCCTTAAGCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACAGACATCATGTGT
GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGATCAGGTTCTCTGGCGATGC
TCCGGCGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
ACCGCAACCTTCGGTCCGTCTGATCTTAGACTGGGAATGAACTCCATAAG
Found at i:18501418 original size:586 final size:587
Alignment explanation
Indices: 18500025--18501803 Score: 2670
Period size: 586 Copynumber: 3.0 Consensus size: 587
18500015 CGTACATCTT
* *
18500025 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCGTT
1 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * **
18500090 CACGTGAAGTTTCATAGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTT-TCG
66 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAT-G
* *
18500154 GTTTGGGATTTTTTAAAATTTTTTC-GAAAGGATTTTTTGCCCCAAACTTGGTAGACGTGATCCT
130 GTTTGGGATTTTTTAAAATTTTTTCAG-AACGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCT
* * *
18500218 TGTATTTTTGTTGGCATGCACAAAACAATTCAACTAAAAACTCGAAGTGTACAGGATTTTGTGAC
194 TGAATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
* *
18500283 CAATTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGT
259 CAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATAT
18500348 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
324 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* ** * * *
18500413 CCAAGTACCAGCACCCACCGTACATCTTGTGCGCACACCCACCCCGGCCCCCCCGATCGTCAGAA
389 CCAAGTACCAGCACCCATCACACATCATGTGAGCACA-CC-CCCCGGCCCCCCCGATCGTCGGAA
* *
18500478 CCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATA
452 CCCCAATGCCATCGATCAGGTTCT-C--CG--G---CGCCGATGGTGCCCCGACGAAGAAAAATA
* * * *
18500543 CGGCACCAGCACATGCTCGAGCCCAGCATATGCTACCGCAATCTTCGGTCCGATCTGATCTTAGA
509 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCCGATCTGATCTTAGA
18500608 CTGGGAATGAACTC
574 CTGGGAATGAACTC
*
18500622 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTT
1 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
18500687 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGG
66 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGG
* ** * *
18500752 TTTGGGATTTTTTAAAATTTTTTCAGAACAAGTTTTCACCCCAAACTTGGTAGATGTGATCTTTG
131 TTTGGGATTTTTTAAAATTTTTTCAGAACGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTG
*
18500817 AATTTTTGTTGGCATGCACAAAAAAATTCAGCTTAAAACTCGAAGTGTACAGGATTTTGTGACCA
196 AATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
* * *
18500882 ATTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCA
261 ATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCA
* *
18500947 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCC
326 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
18501012 AAGTACCAGCACCCATCACACATCATGTAAGCACACCTGCCCCGGCCCCCCCGATCGCCGGAACC
391 AAGTACCAGCACCCATCACACATCATGTGAGCACACC--CCCCGGCCCCCCCGATCGTCGGAACC
* * *
18501077 CCAATGCCACCGAGCAGGTTCTCC-G-G-CGATGGTGCCCCGACGAAGAAAAATACGGTACCAGC
454 CCAATGCCATCGATCAGGTTCTCCGGCGCCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGC
* * *
18501139 ACATGCCCGAGCCCAGCATGTGCTGCCGTAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGA
519 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCCGATCTGATCTTAGACTGGGAATGA
*
18501204 TCTC
584 ACTC
* ** *
18501208 CATATTTCTACGTGCCAATGCCATTTTTATGATTTGTAAATTTATACAATGGTCCCTTAAGCCTT
1 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
18501273 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGG
66 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGG
*
18501338 TTCGGGATTTTTTAAAATTTTTTCAGAACGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTG
131 TTTGGGATTTTTTAAAATTTTTTCAGAACGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTG
* * * * * *
18501403 AAATTTTGGTGGCATGCACAAAAAAATTTAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCA
196 AATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
* *
18501468 ATTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATATCA
261 ATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCA
* * *
18501533 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATACGGGCC
326 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
18501598 AAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCGGCCCCACCGATCGTCGGAACCCC
391 AAGTACCAGCACCCATCACACATCATGTGAGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
* *
18501663 AATGCCATCGATCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCTGACGAAGAAAAATACGGC
456 AATGCCATCGATCAGGTTCTCC---G--GCGCC---GATGGTGCCCCGACGAAGAAAAATACGGC
* * *
18501728 ACCAGCACATGTCGGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-ATTCTGATCTTAGACTG
513 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCCGA-TCTGATCTTAGACTG
18501792 GGAATGAACTC
577 GGAATGAACTC
18501803 C
1 C
18501804 GTATGCTTAG
Statistics
Matches: 1075, Mismatches: 92, Indels: 32
0.90 0.08 0.03
Matches are distributed among these distances:
584 46 0.04
586 491 0.46
587 1 0.00
590 1 0.00
591 1 0.00
592 1 0.00
594 1 0.00
595 95 0.09
596 3 0.00
597 434 0.40
598 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (587 bp):
CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGG
TTTGGGATTTTTTAAAATTTTTTCAGAACGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTG
AATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
ATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCACACATCATGTGAGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
AATGCCATCGATCAGGTTCTCCGGCGCCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCAC
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCCGATCTGATCTTAGACTGGGAATGAAC
TC
Found at i:18501819 original size:26 final size:26
Alignment explanation
Indices: 18501783--18501835 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18501773 CCATTCTGAT
18501783 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18501809 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18501835 C
1 C
18501836 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18503558 original size:26 final size:26
Alignment explanation
Indices: 18503518--18503570 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18503508 CCGATCCGAT
*
18503518 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18503544 CTTAGACTAGTAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18503570 C
1 C
18503571 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18504411 original size:26 final size:26
Alignment explanation
Indices: 18504375--18504429 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
18504365 GCCCAACATG
18504375 TGCTTAGACTGGGAATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
18504401 TGCTTAGACTGGGAATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
18504427 TGC
1 TGC
18504430 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TGCTTAGACTGGGAATGAACTCCGTA
Found at i:18506735 original size:26 final size:25
Alignment explanation
Indices: 18506694--18506745 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
18506684 CTGGTCCGAT
18506694 CTTAGACTGGAATGAACT-TCGTATG
1 CTTAGACTGGAATGAACTCT-GTATG
18506719 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACT-GGAATGAACTCTGTATG
18506745 C
1 C
18506746 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 8 0.32
26 16 0.64
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCTGTATG
Found at i:18507632 original size:26 final size:26
Alignment explanation
Indices: 18507596--18507648 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18507586 CCGAACCAAT
*
18507596 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18507622 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18507648 C
1 C
18507649 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18509391 original size:26 final size:26
Alignment explanation
Indices: 18509362--18509414 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18509352 CCGATCTGAT
* *
18509362 CTTAAACTGGGAATTATCTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
18509388 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18509414 C
1 C
18509415 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18510270 original size:26 final size:26
Alignment explanation
Indices: 18510241--18510293 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18510231 CCGACCCGAT
*
18510241 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18510267 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18510293 C
1 C
18510294 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18510804 original size:885 final size:882
Alignment explanation
Indices: 18505198--18512928 Score: 9060
Period size: 892 Copynumber: 8.7 Consensus size: 882
18505188 CTGGGAACTC
*
18505198 TGGTAGGTGGATTTAGGCACATCTTCATATTTCTGC-GTGCCAATGCCATTTTTATGGCTTGTAA
1 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAG-GCCAATGCCATTTTTATGGCTTGTAA
* *
18505262 ATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
65 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** * * * *
18505327 TTCATGATTTTCAAAACTTTTTACGGTTCGGGATCTTTTAAAATTTTTTTGGAAGGATTTTTGGC
130 TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
18505392 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
195 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * * *
18505457 TCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGACT
260 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
18505522 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
325 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
18505587 AGGGATAGGGGGCCGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
390 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * **
18505652 CCTGACCCCACCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA---TGCTTCG-
455 CC-GGCCCCCCCGATCGCCGAAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGGTGCCCCGA
* ** *** ** *
18505713 -G--G---AATCGTGCTCCGATG-ATGGTGCCCCGATGAAGAAAAATGTGAC-ACCATCACATGC
519 CGAAGAAAAATC-TGCACC-A-GCA-CATG-CCCGA-G-CCCAGCATGTG-CTACC-GCA-A--C
** * ** * * * * *
18505770 CCGAGCCCAGCATGTGCTGCCATAAGCCTCGG-TTCG-A-TCCG-AT-CTTAGACTGGGAATGAA
572 CCTCGTCC-G-ATCCGAT--C-TTAGACTGGGAAT-GAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
18505830 CTCCATATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGGGCTCAGCCGGCCAGAGGGACGGGA
631 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * *
18505895 TGCACAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTG-CTGATCCTACTGTCGTAACCCTC
696 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTC
* * * * *
18505959 GATCTGGTCCTATCTTAGACTGGGAATGAACTCCATACGCCTAAGCCAACCGACGAAATGAGTGG
760 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----
* * * ** * *
18506024 GTGGGTGGGCGGGCAGGCACTATGCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGAATCGATAGT
821 ----GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
18506089 G
882 G
* *
18506090 TGGTAGGTAGGTTTAGGCACATCTTCATATTTCT--ATGTGCTAATGCCATTTTTATGGCTTGTA
1 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-G-GCCAATGCCATTTTTATGGCTTGTA
* *
18506153 AATTTATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
64 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** * * *
18506218 TTTCACGATTTTCAAAACTTTTTATGGTTC-AGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTG
129 TTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
18506282 GCCCCGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
193 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAA
* *
18506347 ACTCAAGAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAA
258 ACTCGA-AGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
18506412 GGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
321 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
18506477 GATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
386 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
18506542 CCCCCCTCGGCCCCCCCGATCG-CTAGAA-CCCAATTACCGCCGGTCAGGTTCTCCAGCGATGCT
451 -CCCCC-CGGCCCCCCCGATCGCCGA-AACCCCAA-T---GCC--TCCGG---T-CAG-G-TTCT
* * * * *
18506605 CCGACGATGGTGCCCCGGCAAAGAAAAATGC-GACACCAACACAAGCTCGAGCCCAGCATGTGCT
501 CCGACGATGGTGCCCCGACGAAGAAAAAT-CTG-CACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
18506669 ACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTTCGTATGCTTAGACTAGGAAT
564 ACCGCAACCCTC-GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * *
18506733 GAACTCTGTATGCCTAAGTAAACCCATGAAATGAGCGTACGGGCGC-CTAGCCAGCCAGAGGGGC
628 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCCGGCCAGAGGGGC
* * ** * **
18506797 GGGATGCGCAAGCCAGGGATTGGTCGGGTCCCCCTCTCCGTGCTGTCGATCCTGCTGTGGCAACC
692 GGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACC
* * * ** * * *
18506862 CTTGGT-TCGATCCGACCTTAGACTGGGAATGAACTCAATATGCCTAAGCCAATCAATGAAACGA
757 CTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-
* * *
18506926 ACGGGTTGGCGGGCGGGCGGGCACTGCGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGA
820 A-------GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
18506991 TAGGG
878 TAGGG
*
18506996 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC-GTGCCAATGCCATTTTTATGGCTTGTAA
1 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAG-GCCAATGCCATTTTTATGGCTTGTAA
18507060 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
65 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
18507125 TTCACTATTTTTGAAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGG
130 TTCACGATTTTTG-AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
*
18507190 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCA-TAAAAAATTCAGCTAAAAA
194 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
18507253 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAAACACTTTAATGGC
259 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
18507318 TACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGAT
324 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*
18507383 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCC
389 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* * * *
18507448 CCCCGGCCCCCCCGATCGTCGGAACACCAATGCCGT-CGGTCAGGTTCTCCGATGATTCTCTGGC
453 CCCCGGCCCCCCCGATCGCCGAAACCCCAATGCC-TCCGGTCAGGTTCTCCGACGA-----T-G-
* * *
18507512 GATTGTACCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCTCAGCATGTGCTGCCGCA
510 G--TG--CCCCGACGAAGAAAAAT-CTGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
* * * * * *
18507577 ACACTCGGTCCGAACCAATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTT
570 ACCCTC-GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
**** ** ** *
18507642 CGTATGCCTAAGTCAACCTGTAAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCGACATAC
634 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * * * * *
18507707 GTAAGCCGGGGATCGATCGAGTCTCCCTCTGCGTGCTGTCGATCCTGTTACCACAGCCCTCAGCC
699 GCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTC
* * *
18507772 CGGT-CGAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA----GCG
764 TGGTCCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
** *
18507832 AACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
828 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* ** *
18507887 TGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATTCCAAAGCCATTTTTATGGCTTGTAAA
1 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAAA
* * *
18507952 GTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACAACTCGTTTTCTATTTT
66 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
18508017 TCACGATTTTTGAAACTTTTTGCGGTTCGCGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
131 TCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
18508082 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAGTCAGCTAAAAACT
196 CCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACT
18508147 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
261 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
18508212 CTCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCTAGGTTTGATGA
326 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
18508277 GGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGTACATCATGTGGGCACACCCCC
391 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* *
18508342 CGGCCCACCCGATCGTCGAAACCCCAATGCCGT-CGGTCAGGTTCTCCGATGATGCTCCAGTGAT
456 CGGCCCCCCCGATCGCCGAAACCCCAATGCC-TCCGGTCAGGTTCTCC---GA-----C---GAT
** * *
18508406 GGTGCCCCGGTGAAGAAAAATGC-GACACCAGCGCATGCCCGAGCCCAGCATGTGCTACCACAAC
509 GGTGCCCCGACGAAGAAAAAT-CTG-CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
* * *
18508470 CCTCG---G-T-C---C----A----G--T---CT--G-AT-CTAAAACTGGGAATGAACTTCGT
572 CCTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
*
18508510 ATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
637 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * ** * *
18508575 AGCGGGGGATCGACTGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACTGCAACCCTCGGTCTGG
702 AGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGG
* * *
18508640 TCCGATCCTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCG
767 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---GCGGGCG
* * *
18508705 GGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGTAAGCCGTGGATCTATAGGG
828 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
18508760 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAA
1 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAAA
* * * *
18508825 TTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCTTGGCAAGACGGCCCGTTTT-TAATTT
66 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTT
* * * *
18508889 TTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGAC
130 TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
*
18508954 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCAGCTAAAAAC
195 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
18509019 TCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
260 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
18509084 ACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
325 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
18509149 AAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGGACAACCC
390 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCC
* * * *
18509214 CCCTGCCCCCCCTGATCGTCGGAAA-CCCAATGCCGCTGGTCAGGTTCTCCAGTGATGCTCGGAT
454 CCCGGCCCCCCC-GATCG-CCGAAACCCCAATGCCTCCGGTCAGGTTCTCC---GA----C----
* * * * *
18509278 GATGGTGCCTCGACGAAGAAAAATATGGTACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCA
506 GATGGTGCCCCGACGAAGAAAAATCT-GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
* * * *
18509343 ACCCTCGATCCGATCTGATCTTAAACTGGGAATTATCTCCGTATGCTTAGACTGGGAATGAACTC
570 ACCCTCG-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * ** * * * *
18509408 CGTATGCCTAAGTCAACCCACAAAACAAACGTATGGGCACTCAACTGGCCAGAGGGGCAGGATGC
634 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * ** * * * *
18509473 ACAATCGGGGGATCGGTCAGGTCCCCCTTTGCGTGTTGTCGATCCTGCTGCCACAACCCTCGGTC
699 GCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTC
* * * * * * *
18509538 CGATCCGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGCCAACTGATG-AA--AG-GAGCGG
764 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
18509599 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
829 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
18509653 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAAGCCAATGCCATTTTTATGGCTTGTAAG
1 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAAA
* *
18509718 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTT
66 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
18509783 TCATGATTTTT-AAAATATTTTACTGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC
131 TCACGATTTTTGAAACT-TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
*
18509847 CCCAAACTTGGTAGATGTGATCCTTGTATTTTCT-TTGGCATGCACAAAAAAATTCAGCTAAAAA
195 CCCAAACTTGGTAGACGTGATCCTTGTATTTT-TATTGGCATGCACAAAAAAATTCAGCTAAAAA
*
18509911 CTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTACTGGC
259 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
18509975 TACCGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGAT
324 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
18510040 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAAGTGCGCACACCC
389 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * *
18510105 CCCGGCCCCCCCGATCGCCAAAACCCCAATACCTCCGGTTAGGTTCTCCGACGATGGTGCCCCGG
454 CCCGGCCCCCCCGATCGCCGAAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGGTGCCCCGA
*
18510170 TGAAGAAAAATACTGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGA
519 CGAAGAAAAAT-CTGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC-GTCCGA
* *
18510235 CCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
582 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
18510300 CAACACACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGTAAGCCGGGGAT
647 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
*** ** ** * *
18510365 CGGTTGGGTCCCCCTCTATGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTTCGATCTTA
712 CGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTA
*
18510430 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGACGGGCACT
777 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG--G-CGGGCACT
* * * *
18510495 ACGTCGGCCAAAGGGAC-GGATGCGTAAGCCGT-GATCGATAGGG
838 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * *
18510538 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCGAATGCCATTTTTCTAGATTGTAAA
1 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAAA
* * *
18510603 TTCATACAATGGACCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCATTTTCTATTTT
66 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
18510668 TCACGATTTTTGAAACTTTTTAGGGTTCGAGATTTTTTAAAATTTCTTCGGAAGAAGTTTTGGCC
131 TCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
18510733 CCAAACTTGGTAGACGTGATCCTTGTATTTCTATTGGCATGCACAAAACAATTCATCTAAAAACT
196 CCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
18510798 CGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTA
261 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
18510863 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGA
326 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
18510928 GGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCACA-CCCC
391 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * * *
18510992 CGACCCCCCCGACCACTGGAGCCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGATG
456 CGGCCCCCCCGATCGCCGAAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGGTGCCCCGACG
* * * ** * * ** * * * *
18511057 AAGAAAAATGTGGCATC-GACAAATGCCCGATTCCAGCACGTACCGCTGTAACCCTCGATCTGGT
521 AAGAAAAATCT-GCACCAG-CACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG-TCCGAT
* * * *
18511121 TCGATGTTAGATTGGGAATTAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
583 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * **
18511186 AACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACTAGAGGGGTGGGATGTGTAAGTTGGGGATC
648 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * **
18511251 GACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC-AAAACCTTGGGCTTATCCGATCTTAG
713 GACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAG
* * * * * *
18511315 CCTGGGAATGAACTCCGTATGCCTAAGCGAACTGACGAAATGAGTGGGCGGGCGGGCACTACTCC
778 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCC
* * * **
18511380 AGCCAGAGAGACAGGATGTGCAAGCCAAGGATCGATAGGG
843 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
18511420 TGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCATGCCAATGCCATTTTTCTGCCTTGTAAA
1 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAAA
*
18511484 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
66 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
18511549 TCACGAATTTTGAAAATTTTTACGGCTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
131 TCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * *
18511613 ACCGAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
195 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
18511678 TCGAAGTGTACAAGATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATG
260 TCGAAGTGTAC-A-A-GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
18511743 GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTG
322 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * * *
18511808 ATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATCGCACGTCATGTCCGCCCAC
387 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
** *
18511873 CCCCCCGGCTACCCCGATCGCCGGAACCCCAATGCCATCGGTACCCCAATGCATCCGGTCAGGTT
451 CCCCCCGGCCCCCCCGATCGCC-G-------A----A-----ACCCCAATGCCTCCGGTCAGGTT
*
18511938 CTTCGGCGATGGTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGCCACCAGCACATGCCCGAGC
499 C-TC--CGA--------CGATGGTGCCCCGACGAAGAAAAATCTG-CACCAGCACATGCCCGAGC
*
18512003 CCAGCATGTGCTGCCGCAA-CC-C-T-CG----G-TC-----C--GG--T---CT--G-AT-CTT
552 CCAGCATGTGCTACCGCAACCCTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
18512043 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAACGTGCGAGCGTTCAGCCGG
617 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * ** *
18512108 CCAGAGGGCCGGGATGCACAAGTCAGGGATCGACTGGGTCCTTCTCTGCATGCTGTCGATCCTGC
682 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGC
* * * * *
18512173 TACCGCAACCCTCGGTCGGGTCTGATCTTAGACTGGAAATGAACTCTGTATGCCTAAGCCAACCG
747 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
*
18512238 ACGAAACGAGCGGGCGGGCGGGCACTAATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
812 ACGAAACGAGCGGGCGGGCGGGCACT-ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
18512303 GATAGGG
876 GATAGGG
* * *
18512310 TGGTAGGTGGGTTTAGGGACATCTTCATATTTCTG-AGTGCCGATGCCATTTTTATGGCTTGTGA
1 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAG-GCCAATGCCATTTTTATGGCTTGTAA
*
18512374 ATTCATACAATGGTCCATTAAG-CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
65 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
18512438 TTTATGATTTTTGAAACTTTTTACGGTTCGAAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
130 TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
18512503 CCCAAACTTCGTAGACGTGATCCTTGTA-TTTTATTTGGCATGCACAAAAAAATTCAGCTAAATA
195 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTA-TTGGCATGCACAAAAAAATTCAGCTAAAAA
*
18512567 CTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
259 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * * *
18512632 TACCGACAGCAAACATGTAAAATCTCAAATGCACTTTAAGGGGGTATGAGTTCTCGAGTTTTGAT
324 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
18512697 GAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCC
389 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * *
18512762 CTTCGG-CCCCCTGATCGCCGGAACACCAATGCCGT-CGGTCAGGTTCCGTGCTCCGGCGATAGT
454 C-CCGGCCCCCCCGATCGCCGAAACCCCAATGCC-TCCGGTCAGG-T---T-CTCCGACGATGGT
* * * *** *
18512825 GCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTTCTGTTGCAACTCTT
512 GCCCCGACGAAGAAAAAT-CTGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC-CCT
* * * * *
18512890 GGTCTGGTCTGATCTTAG-CTAGGAATGAACTCCGTATGC
575 CGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
18512929 CTAAGCCAAC
Statistics
Matches: 5915, Mismatches: 703, Indels: 446
0.84 0.10 0.06
Matches are distributed among these distances:
863 58 0.01
864 1 0.00
865 173 0.03
866 5 0.00
867 2 0.00
868 1 0.00
869 19 0.00
870 2 0.00
871 2 0.00
872 3 0.00
873 476 0.08
874 18 0.00
875 91 0.02
876 5 0.00
877 1 0.00
878 1 0.00
879 263 0.04
880 26 0.00
881 226 0.04
882 47 0.01
883 7 0.00
884 234 0.04
885 508 0.09
886 215 0.04
887 193 0.03
888 120 0.02
889 82 0.01
890 340 0.06
891 369 0.06
892 610 0.10
893 321 0.05
894 181 0.03
895 22 0.00
896 3 0.00
897 9 0.00
898 7 0.00
899 4 0.00
900 9 0.00
901 165 0.03
902 95 0.02
903 386 0.07
904 22 0.00
905 28 0.00
906 385 0.07
907 83 0.01
908 2 0.00
909 7 0.00
910 4 0.00
911 9 0.00
912 2 0.00
913 8 0.00
914 54 0.01
915 4 0.00
916 6 0.00
917 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (882 bp):
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CGGCCCCCCCGATCGCCGAAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGGTGCCCCGACG
AAGAAAAATCTGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGTCCGATCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC
CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
Found at i:18511163 original size:26 final size:26
Alignment explanation
Indices: 18511127--18511178 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18511117 TGGTTCGATG
* *
18511127 TTAGATTGGGAATTAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18511153 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18511179 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18511931 original size:17 final size:18
Alignment explanation
Indices: 18511893--18511931 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
18511883 ACCCCGATCG
*
18511893 CCGGAACCCCAATGCCAT
1 CCGGTACCCCAATGCCAT
18511911 -CGGTACCCCAATG-CAT
1 CCGGTACCCCAATGCCAT
18511927 CCGGT
1 CCGGT
18511932 CAGGTTCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.23, C:0.41, G:0.21, T:0.15
Consensus pattern (18 bp):
CCGGTACCCCAATGCCAT
Found at i:18513624 original size:26 final size:26
Alignment explanation
Indices: 18513588--18513640 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18513578 CTGGTCCGAT
*
18513588 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18513614 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18513640 C
1 C
18513641 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18514532 original size:26 final size:26
Alignment explanation
Indices: 18514496--18514548 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18514486 CTGGTCCGAT
18514496 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
18514522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCATATG
18514548 C
1 C
18514549 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:18515245 original size:900 final size:895
Alignment explanation
Indices: 18512890--18515362 Score: 3474
Period size: 896 Copynumber: 2.8 Consensus size: 895
18512880 TGCAACTCTT
* *
18512890 GGTCTGGTCTGATCTTAG-CTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAATCGAGCGG
1 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAGAAA-CGAGC-G
* * * *
18512954 ACAGGCGGGTGGGCAGGCACTACGCCGGCCAGAGAAACGGGATGTGCAAGTCGTGGATCGATAGG
64 ---GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGG
18513019 GTGGTAGGTGGGTTTAGG--CA----C--A--TCT--T--C-AT---A-TTTTATGGCTTGTAAA
126 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCATGCCAATGCCATTTTTATGGCTTGTAAA
*
18513065 TTCATACAATGGTCCCTTAAGACTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
191 TTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
*
18513130 TCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCC
256 TCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCC
* *
18513195 CAAACTTGGTACACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTC
321 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTC
* *
18513260 GAAGTGTACAAGATTTTGTGAGCATTTGAAAAAGGTGTCCCCATTTTAGACACTTTAATGGCTAC
386 GAAGTGTACAAGATTTTGTGACCATTTGAAAAA-GTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
18513325 TGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
450 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * ** * *
18513390 GGATAGGGGGCCACTATAAGGGCC-AGTACAAGCATGCATCACACATCATGTGTGCACACCCCCC
515 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
18513454 CAACCCCCTCGAT-AGCCGGAACCCCAATGCCGCCAGTCAGGTTC-T------C--CGACGATGG
580 CGACCCCCCCGATCA-TCGGAACCCCAATGCCGCCAGTCAGGTTCTTCGACAACTTCGACGATGG
* * * *
18513509 TGCCCCGGCGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCGACCGCAACCCT
644 TGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATATGCGACAGCAACCCT
** *
18513574 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTGCGTATGCTTAGACTGGGAATGAACTCCGTAT
709 CGGTCTGGTCCGATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGAATGAACTCCGTAT
*
18513639 GCCTAAGTCAACCCACGAAACGAGCAGGCGGGCGCTTCAGCTGGTCAGAGGGGCGGGATGCGCAA
774 GCCTAAGTCAACCCACGAAACGAGCAGGCGGGCGCTTCAGCTGGCCAGAGGGGCGGGATGCGCAA
* * * * *
18513704 ACCGGCGATCGATCGGGTCACCCTCTGCGTGCTATCGATCTTGCTGCCACAACCCTC
839 ACCGGCGATCGATCAGGTCACCCTCTGCGTGCTACCGATCCTACTACCACAACCCTC
** **
18513761 GGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACTTACGAAACGAGCGG
1 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-GAAACGA----
* * *
18513826 GCGGGCGGGCGGGCGGGCAGGCATTATGTCGGCCAGAGAGACAGGATGTGCAAGCCGTGGATCGA
61 GCGGGCGGGCGGGCGGGCA--C--TACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGA
* *
18513891 TAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCATTTTTATGGCTT
122 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CATGCCAATGCCATTTTTATGGCTT
* * *
18513956 GTAAATTCATACTATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGATGAGTCGTTTTCT
186 GTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
18514021 ATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTCGGAAGGAGTTTT
251 ATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTT
* * *
18514086 GACCCCAAACTTGGTAGACATGATGCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCAAAA
316 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAA
*
18514151 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
381 AACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATG
*
18514216 GCTACTGGCAGCAAACCTGTAAAATCTCTAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
445 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
18514281 ATGAGGGATAGGGGGCCAATTTGAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
510 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* ** *
18514346 CCCCCCGACCCCCCCGATCATCGGAACCCCAATGTCGCTGGTCAAGTTCTTCGACGAAACTTCGA
575 CCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTTCGAC--AACTTCGA
*
18514411 CGATGGTGCCCCGACGAAGAGAAATGTGGCACCAGCACATGCCCGAGCCCAGCATATGCTG-CAG
638 CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATATGC-GACAG
*
18514475 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGAATGAAC
702 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGAATGAAC
*
18514540 TCCGTATGCCTAAGTCAACCCACGAAACGAG-TGAGCGGGCGC-TCAG-TCGGCCAGAGGGGCGG
767 TCCGTATGCCTAAGTCAACCCACGAAACGAGCAG-GCGGGCGCTTCAGCT-GGCCAGAGGGGCGG
* * * * * * * **
18514602 GATGCGCAAGCCGGGGATCGGTTAGGTCCCCCTCTGTGTGCTGCCGATCCTACTACCGTAACCCT
830 GATGCGCAAACCGGCGATCGATCAGGTCACCCTCTGCGTGCTACCGATCCTACTACCACAACCCT
18514667 C
895 C
* *
18514668 GGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGG
1 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-GAAACGAGCGG
*
18514733 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
65 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGG
* * *
18514798 TAGGTGAGTTTCGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAATC
130 TAGGTGGGTTTAGGCACATCTTCATATTTCT-CATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
18514863 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
194 ATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
18514928 CGATTTTTGAAACTTTTTGCAGTTAGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCA
259 CGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCA
* * *
18514993 AACTTGGTAGACATGATCCTTG-ACTTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCA
323 AACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCG
*
18515057 AAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTATT
387 AAGTGTACAAGATTTTGTGACCATTTGAA-AAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
18515122 GGTAGCGAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
451 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
18515187 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
516 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * * * * **
18515251 GGCGCCCCCGATCGTCGAAACCCTAATGCCGCCAGTCAGGTTCTCCGACAATGCTTCGGTGATGG
581 GACCCCCCCGATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTTCGACAA--CTTCGACGATGG
* *
18515316 TGCTCCGACGACA-AAAAATGTGGCACCAGCACATACCCGAGCCCAGC
644 TGCCCCGACGA-AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
18515363 TTGTGCTGTC
Statistics
Matches: 1418, Mismatches: 131, Indels: 78
0.87 0.08 0.05
Matches are distributed among these distances:
871 18 0.01
872 46 0.03
873 3 0.00
874 1 0.00
875 1 0.00
876 59 0.04
878 2 0.00
882 1 0.00
884 1 0.00
886 2 0.00
889 1 0.00
891 1 0.00
892 2 0.00
895 1 0.00
896 338 0.24
897 77 0.05
898 2 0.00
899 297 0.21
900 258 0.18
901 1 0.00
903 19 0.01
906 2 0.00
907 124 0.09
908 160 0.11
909 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (895 bp):
GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAGAAACGAGCGGG
CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
ATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCC
CCCCGATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTTCGACAACTTCGACGATGGTGCCCCG
ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATATGCGACAGCAACCCTCGGTCTG
GTCCGATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCAGGCGGGCGCTTCAGCTGGCCAGAGGGGCGGGATGCGCAAACCGGCG
ATCGATCAGGTCACCCTCTGCGTGCTACCGATCCTACTACCACAACCCTC
Found at i:18516004 original size:669 final size:669
Alignment explanation
Indices: 18514726--18516047 Score: 2116
Period size: 669 Copynumber: 2.0 Consensus size: 669
18514716 ACCGATGAAA
*
18514726 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
1 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAT
* * *
18514791 AGGGTGGTAGGTGAGTTTCGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
66 AGCGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAATTTTATGGCTTG
18514856 TAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
131 TAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
* *
18514921 TTTTTCACGATTTTTGAAACTTTTTGCAGTTAGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
196 TTTTTCACAATTTTTGAAACTTTTTGCAGTTAGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTT
18514986 GGCCCCAAACTTGGTAGACATGATCCTTGACTTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAA
261 GGCCCCAAACTTGGTAGACATGATCCTTGACTTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAA
* *
18515051 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATG
326 AACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
18515116 GCTATTGGTAGCGAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTG
391 GCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * *
18515181 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
456 ATGAGGGATAAGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGAACATCATCTGCGCACAC
* * * **
18515246 CCCCCGGCGCCCCCGATCGTCGAAACCCTAATGCCGCCAGTCAGGTTCTCCGACAATGCTTCGGT
521 CCCCCGGCCCCCCCGACCGTCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGACAATGCTTCGAC
* * * *
18515311 GATGGTGCTCCGACGACAAAAAATGTGGCACCAGCACATACCCGAGCCCAGCTTGTGCTGTCGCA
586 GATGGTACTCCGACGACAAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCCGCA
18515376 ACCATCGGTCAGATCCGAG
651 ACCATCGGTCAGATCCGAG
*
18515395 CGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAT
1 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAT
* * *
18515460 AGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGA-GCCAATGCCAATTTTGTGGCTT
66 AGCGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTA-CATGCCAATGCCAATTTTATGGCTT
* * * *
18515524 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGAGGACTCGTTTTCT
130 GTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
** * *
18515589 ATTTTTCACAATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGATTTT
195 ATTTTTCACAATTTTTGAAACTTTTTGCAGTTAGGGATTTTTTAAAATTTTTTTGAAAGGAGTTT
* *
18515654 TGGCCCCAAACTTGG-AGACGTGATCCTTGTA-TTTTTGTTGGCATGC-ACAAAAAATTCAGCTA
260 TGGCCCCAAACTTGGTAGACATGATCCTTG-ACTTTTTGTTGGCATGCAAAAAAAAATTCAGCTA
*
18515716 AAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCTATTTCAGACACTTTAA
324 AAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
18515781 TGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTT
389 TGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTT
*
18515846 TGATGAGGGATAAGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGAACATTATCTGCGCAC
454 TGATGAGGGATAAGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGAACATCATCTGCGCAC
* ** * *
18515911 ACCCCCTCCGGCCCCCCCGACCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCAATTCTT
519 A-CCCC-CCGGCCCCCCCGACCGTCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGACAATGCTT
* *
18515976 CGACGATGGTAC-CCTGACGA-AGAAAAATGCGGCACCAGCACATGCCCGAGGCCAGCATGTGCT
582 CGACGATGGTACTCC-GACGACA-AAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGCT
18516039 GCCGCAACC
645 GCCGCAACC
18516048 CTTGGTCTGG
Statistics
Matches: 599, Mismatches: 48, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
667 199 0.33
668 35 0.06
669 364 0.61
670 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (669 bp):
CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAT
AGCGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAATTTTATGGCTTG
TAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
TTTTTCACAATTTTTGAAACTTTTTGCAGTTAGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTT
GGCCCCAAACTTGGTAGACATGATCCTTGACTTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAA
AACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAAGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGAACATCATCTGCGCACAC
CCCCCGGCCCCCCCGACCGTCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGACAATGCTTCGAC
GATGGTACTCCGACGACAAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCCGCA
ACCATCGGTCAGATCCGAG
Found at i:18516100 original size:26 final size:26
Alignment explanation
Indices: 18516064--18516116 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18516054 CTGGTCCGAT
*
18516064 CTTAGACTGGGTATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18516090 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18516116 C
1 C
18516117 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18517002 original size:26 final size:26
Alignment explanation
Indices: 18516964--18517014 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18516954 CCGGTCCGAT
*
18516964 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18516990 CTTAGACTAGGAATGAACTCCATAT
1 CTTAGACTAGGAATGAACTCCATAT
18517015 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18517448 original size:902 final size:895
Alignment explanation
Indices: 18515400--18518784 Score: 4861
Period size: 902 Copynumber: 3.8 Consensus size: 895
18515390 CCGAGCGAGC
*
18515400 GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGCGT
1 GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
* *
18515465 GGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ATGAGCCAATGCCAATTTTGTGGCTTGTAA
66 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT--GCCAATGCCATTTTTATGGCTTGTAA
* *
18515528 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGAGGACTCGTTTTCTATTT
129 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTT
* * * *
18515593 TTCACAATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGC
194 TTCACAATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
18515658 CCCAAACTTGG-AGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAAC
259 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
18515721 TCA-AAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGC
324 T-AGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
18515785 TACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCT-AGGTTTGA
388 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-TGAGGTTTGA
* * * *
18515849 TGAGGGATAAGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGAACATTATCTGCGCACACC
452 TGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * * *
18515914 CCCTCCGGCCCCCCCGACCGTCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGGCAATTCTTCG
516 CCC-CCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCG
* *
18515978 ACGATGGTACCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGGCCAGCATGTGCTGCCG
579 ACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * *
18516043 CAACCCTTGGTCTGGTCCGATCTTAGACTGGGTATGAACTCCATATGCTTAGAGTGGGAATGAAC
644 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAAC
* * * * * * *
18516108 TCCGTATGCCTAAGTCAACACATGAAATGAGCGTGCGAGTGCTCAGTCGGCTAGAGGTGCAGGAT
708 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGCTAGAGGGGCGGGAT
* *
18516173 GCGCAAGCCAGGGATCGACTGGGTCCCTCTCTGCATG-CTAT-GATCCTACTGCTGTAACCCTCG
773 GCGCAAGCCGGGGATCGAC-GGGTCCCCCTCT--ATGTCT-TCGATCCTACTGCTGTAACCCTCG
* *
18516236 ATCTGGTCTGATCTTA-ACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAACGAGT
834 ATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGT
* * * * *
18516297 GGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCACAAGCCGTGGATCGACAGGGT
1 GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
* **
18516362 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
66 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
18516427 TCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTAGTTTT
131 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTT
** * * * * *
18516492 CATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCC
196 CACAATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
*
18516557 CAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTA
261 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTA
18516622 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
326 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
18516687 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
391 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
* *
18516752 GGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCGCC
456 GGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC
* * * * *
18516817 CCGGCACCCCCGATCGCCGAAAACCCAATGTCGTCGGGTCAAGTTCTCCGGCGATGCTCCGGCGA
519 CCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGACGA
* * * * * * *
18516882 TGGTGCCCTGGCAAAGAAAAATGTGGCACGAGCACATGCCCTAGCCCAACATGTGCTGCCGTAAC
583 TGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
*
18516947 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCA
648 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACTCCG
* * * *
18517012 TATACCTAAGTCAACCCATGAAACGTGCGTGCGGGAGCTCCGCCGGCTAGAGGGGCGGGATGCAC
712 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGCTAGAGGGGCGGGATGCGC
* * * *
18517077 AAGTCGGGGATCGATCGGGTCCCCCTCTATGTACTGTCGATCTTGCTGCTGCAACCCTCGAT-TC
777 AAGCCGGGGATCGA-CGGGTCCCCCTCTATGT-CT-TCGATCCTACTGCTGTAACCCTCGATCT-
* *
18517141 AGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGT
838 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGT
* * * *
18517199 GGGCGGGCGGGCGGGCATTACGTTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGT
1 GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
* *
18517264 GGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCGAATGCCATTTTTATGGCTTGTAAAT
66 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
18517329 ACATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTT
131 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTT
* * *
18517394 CACAATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAAGTTTTTCGGAAGGAGTTTTGGCCC
196 CACAATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
* * * * *
18517459 TAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGAATGCACAAAAACATTCAGCTAAAAACTC
261 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTA
* * *
18517524 GAAGTGTACAACATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
326 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
18517589 TGCCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAG
391 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
18517654 GGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
456 GGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* ** *
18517718 GGCCCCCCCGATCGCCGTAACCCCAATGCCCCCGGTCAGGTTCTCCGGTGATGCTCC-AGCGATG
521 GGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATG
* * * *
18517782 GTG-CCTCAGCGAAGAAAAATGCGGCAACAGCACATGCCCGAGCCCAGTATGTGCTGCTGCAACC
585 GTGCCCTGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* **
18517846 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGAAATGAACTCCGT
649 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG-AATGAACTCCGT
* * * * *
18517911 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCA
713 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGCTAGAGGGGCGGGATGCGCA
** * * *
18517976 AGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACGGATCCTACTGCTGTAACTCTCGGTCTGG
778 AGCCGGGGATCGA-CGGGTCCCCCTCTATGT-CTTC-GATCCTACTGCTGTAACCCTCGATCTGG
* *
18518041 TCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACCAAACAA--
840 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGT
* * * * *
18518095 --GCGGGTGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCATGTATCGATTGAGT
1 GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
*
18518158 GGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
66 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
18518223 TCATACTATGGTCCCTTAAGCCTTCACGTGTAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
131 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTT
* ** *
18518288 CA-AGATTTTTAAAACTTTTTGC-AGTTCAAGATTTTTTTAAAATTTTTTCGAAAGGTG-TTTGG
196 CACA-ATTTTTGAAACTTTTTGCGA-TTCGGGA-TTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
**
18518350 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTGCAACAAAAA-TCAGCTAAAA
258 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA-AAAAATTCAGCTAAAA
* * * *
18518414 ACTCGAAGTGTACCAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGG
322 ACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
18518479 CTATTGGCAACAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTTGAGGTTTGA
387 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
* *
18518544 TGAGGGATATGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATTATGTGCGCACACC
452 TGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
18518609 CCCCCGTCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAGTGATGCTCTGAC
516 CCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGAC
* * * *
18518674 GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCGAGCATGTGCTGTCGCA
581 GATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* *
18518739 ACCCTCGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCGTATGC
646 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
18518785 CCGAGCCAAC
Statistics
Matches: 2232, Mismatches: 228, Indels: 57
0.89 0.09 0.02
Matches are distributed among these distances:
893 2 0.00
894 384 0.17
895 77 0.03
896 154 0.07
897 255 0.11
898 329 0.15
899 256 0.11
900 227 0.10
901 83 0.04
902 465 0.21
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTT
CACAATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTA
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
GGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
GGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGG
TGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAATGAACTCCGTATG
CCTAAGTCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGC
CGGGGATCGACGGGTCCCCCTCTATGTCTTCGATCCTACTGCTGTAACCCTCGATCTGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGT
Found at i:18517891 original size:26 final size:26
Alignment explanation
Indices: 18517862--18517914 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18517852 CTGGTCCGAT
* *
18517862 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18517888 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18517914 C
1 C
18517915 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18519684 original size:4 final size:4
Alignment explanation
Indices: 18519668--18519697 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
18519658 GAAGAAACGA
*
18519668 GCGG GCGG CCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
18519698 ACTATACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.30, G:0.70, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:18522018 original size:719 final size:714
Alignment explanation
Indices: 18519616--18522334 Score: 3505
Period size: 719 Copynumber: 3.8 Consensus size: 714
18519606 TCAGTCGGTC
* *
18519616 CGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGCCGGG
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------G-CGGG
** *
18519681 CGGGCGGGCGGGCGGGCACTATACCGGCCAGAGAGAC-AGGATGCGCAACCCGTGGATCGATAGG
58 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGG
* * *
18519745 GTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCGAATGCCATTTTTATGGCTTGTAA
122 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
*
18519810 ATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
187 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * **
18519875 TTCATGATTCTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGCCTTTTGGC
252 TTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGC
* * *
18519940 CCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAC
317 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAAC
18520005 GCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCT
382 GCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCT
*
18520070 ACTGGCAGCAAACCTGTAAAATCTCAATTGCT-TTGTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
447 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* * * * * *
18520134 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGTAACCATCGCACAACAGGTGCGCTCACCC
511 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* ** ** * *
18520199 CCC-GCCCCCCCGATCGCCTGAACCCCAATGCCGTCAACCCACGGAACAAGCGTGCGG-GCTCTC
576 CCCGGCCCCCCC-ATCGAC-GAACCCCAATGCCGTC-GGCCA-GG----TTC-TCCGGTGATCTC
** * ** * * * *
18520262 AAGCGGCCAGAGGGGTGGGATGCGCAAACCG-GGAATCGATCGGGTCCACC-TCTACGT-CCT--
632 ---CGG-C-GA----T-GG-TGC-CCGA-CGAAGAA-AAAT-GCG-ACACCAGC-ACATGCCTGA
** * * * * *
18520322 GCTGATCCTGT--TACCGCAACCTTCGGTCTGGTT
680 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATT
* * * * *
18520355 CAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGGCGTG
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * * *
18520420 CGGGCGGTCACTATGCCGGCTAGAGAGACGGGATACGCAAGCCGTGTATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
18520485 GGGTTTAGGTACATCTTCATATTTTTG-GATGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
131 GGGTTTAGGCACATCTTCATATTTCTGCG-TGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
** * * *
18520549 AATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTACGAT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * **
18520614 TTTCAAAACTTTTTGCCCTTCGGGATTTTTTAAAATTTTTTT-GAAAGGATTTTTGGCCCCAAAC
260 TTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAA-GATTTTTGGCCCCAAAC
* * * *
18520678 TTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAAAAAAATCAGCTAAAAACTCGAAGT
324 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACGCGAAGT
* * * *
18520743 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCA
389 GTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
*
18520808 GCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCGAA-GTTTGATGAGGGAT
454 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AAGGTTTGATGAGGGAT
* * * * *
18520872 AGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCCCATATCATGTGCGGACACCCCCCGGGC
518 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * *
18520937 CCCCCATCGACGGAACCACAATGCCGTCGGTCAGGTTCTTCGGTGA--T---GC-----T--CCG
583 CCCCCATCGAC-GAACCCCAATGCCGTCGGCCAGGTTCTCCGGTGATCTCCGGCGATGGTGCCCG
* * * * * *
18520990 ACGAAGAAAAATACGGCACCAGCACATGCC-GAGACCAGCATGTGCTGCCACAACCCTCAGTCCG
647 ACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
18521054 ATT
712 ATT
* * * * *
18521057 TGATCTTAGACTGGGAATGAACTCTGTATGCGTAAGGCAACCGACGAAACGAGCGGTCGGGCGGG
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
** * *
18521122 CAAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
**
18521187 GGGTTTAGGCACATCTTCATATTTCTGCACGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
18521252 ATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * ** *
18521317 TTTGAAACTTTTTATGGTTCGGGATATTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTT
261 TTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGCCCCAAACTT
* *
18521382 GGTAGACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGT
326 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACGCGAAGTGT
* * * * *
18521447 ACAAGATTTTGTGACAATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGAAGC
391 ACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
* ** *
18521512 AAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGCTTTGATGAGGG-TAGG
456 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
*
18521576 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCCCGCCCGGCCC
521 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCCC
* *
18521641 CCCCAATCGTCGAAACCCCAATGTCGTCGGCCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCC
584 CCCC-ATCGACG-AACCCCAATGCCGTCGGCCAGGTTCTCCGGTGAT-CTCCGGCGATGGTG-CC
*
18521706 CGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTC
645 CGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
18521771 TAATT
710 TGATT
* * * *
18521776 CGATCTTAGACTAGGAATGAACTCCGTATGCGTAAGCCAACTGACGAAACGAGCGGTCGGGCGGG
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* *
18521841 CGGGCGGGCACTACGCCGACCAGAGAGACGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
18521906 GGGTTTAGGCACATCTTCATATTTCTGCGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
18521971 ATGGTCCCTTAAGCCTTTACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
18522036 TTCTAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTTGGAAGGATTTTTGGCCCTAAACTT
261 TTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGCCCCAAACTT
18522101 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACGCGAAGTGT
326 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACGCGAAGTGT
*
18522166 ACAAGATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
391 ACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
* * * *
18522231 AAACTTGTAAAATCTCAATTGCTTTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGG
456 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* *
18522296 GGGCCAATATAAGGGCCAAGTACGAGTACCCATCGCACA
521 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
18522335 ACAGGTTAGG
Statistics
Matches: 1743, Mismatches: 200, Indels: 93
0.86 0.10 0.05
Matches are distributed among these distances:
698 7 0.00
699 4 0.00
700 10 0.01
701 57 0.03
702 474 0.27
703 16 0.01
704 35 0.02
707 1 0.00
710 2 0.00
715 1 0.00
716 1 0.00
717 1 0.00
718 31 0.02
719 505 0.29
720 41 0.02
723 1 0.00
724 4 0.00
725 2 0.00
729 2 0.00
730 6 0.00
731 482 0.28
732 12 0.01
739 48 0.03
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (714 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
CGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
TTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACGCGAAGTGT
ACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CCATCGACGAACCCCAATGCCGTCGGCCAGGTTCTCCGGTGATCTCCGGCGATGGTGCCCGACGA
AGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATT
Found at i:18524146 original size:16 final size:16
Alignment explanation
Indices: 18524126--18524166 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
18524116 TTCTTTTGTA
18524126 TTTTATGTATT-TTAT
1 TTTTATGTATTATTAT
18524141 TATTTAT-TATTATTAT
1 T-TTTATGTATTATTAT
*
18524157 TGTTATGTAT
1 TTTTATGTAT
18524167 ATCTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.68
Consensus pattern (16 bp):
TTTTATGTATTATTAT
Found at i:18524231 original size:20 final size:18
Alignment explanation
Indices: 18524197--18524240 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
18524187 TATTTATATG
18524197 TAATTTATTTATATAGTTA
1 TAATTTATTTATATA-TTA
18524216 TATATTTA-TTATTATATTA
1 TA-ATTTATTTA-TATATTA
18524235 TAATTT
1 TAATTT
18524241 TTTTTTGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TAATTTATTTATATATTA
Found at i:18524232 original size:14 final size:16
Alignment explanation
Indices: 18524182--18524232 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
18524172 TTTTTTTTCT
18524182 GTTA-ATATTTATAT-
1 GTTATATATTTATATA
* *
18524196 GTAATTTATTTATATA
1 GTTATATATTTATATA
18524212 GTTATATATTTAT-TA
1 GTTATATATTTATATA
18524227 -TTATAT
1 GTTATAT
18524233 TATAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 9 0.29
15 11 0.35
16 11 0.35
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (16 bp):
GTTATATATTTATATA
Found at i:18524704 original size:31 final size:31
Alignment explanation
Indices: 18524669--18524736 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
18524659 AAATTCCAAA
** * ** *
18524669 TTTCGGTGAATTTTCCGACGAAGTTTGAATT
1 TTTCGGTGAAAATTCCGACCAAACTTGAAGT
18524700 TTTCGGTGAAAATTCCGACCAAACTTGAAGT
1 TTTCGGTGAAAATTCCGACCAAACTTGAAGT
18524731 TTTCGG
1 TTTCGG
18524737 CGACCTGCCC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (31 bp):
TTTCGGTGAAAATTCCGACCAAACTTGAAGT
Found at i:18525221 original size:13 final size:13
Alignment explanation
Indices: 18525205--18525229 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18525195 TTTCAAAATT
18525205 TTTTATTTATTTG
1 TTTTATTTATTTG
18525218 TTTTATTTATTT
1 TTTTATTTATTT
18525230 ATTTATTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (13 bp):
TTTTATTTATTTG
Found at i:18525288 original size:22 final size:21
Alignment explanation
Indices: 18525263--18525342 Score: 81
Period size: 22 Copynumber: 3.6 Consensus size: 21
18525253 TTTAATATTT
*
18525263 TTTTATCTTATTTTTATTTTTG
1 TTTTAT-TTATTTTTATTTTTA
*
18525285 TTTTACTTT-TCTTTATTTTTTA
1 TTTTA-TTTATTTTTA-TTTTTA
*
18525307 TCTTTATTTATTTTCATTTTTA
1 T-TTTATTTATTTTTATTTTTA
18525329 TTTTATTCTATTTT
1 TTTTATT-TATTTT
18525343 CTTTAAATAA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
21 11 0.22
22 29 0.59
23 9 0.18
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (21 bp):
TTTTATTTATTTTTATTTTTA
Found at i:18525294 original size:17 final size:16
Alignment explanation
Indices: 18525248--18525320 Score: 53
Period size: 17 Copynumber: 4.6 Consensus size: 16
18525238 ATTAGATTAG
**
18525248 ATTTATTTAATATTTT
1 ATTTATTTTTTATTTT
* *
18525264 -TTTATCTTAT-TTTT
1 ATTTATTTTTTATTTT
18525278 ATTT-TTGTTTTACTTTT
1 ATTTATT-TTTTA-TTTT
*
18525295 CTTTATTTTTTATCTTT
1 ATTTATTTTTTAT-TTT
18525312 ATTTATTTT
1 ATTTATTTT
18525321 CATTTTTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
14 5 0.11
15 14 0.31
16 1 0.02
17 23 0.51
18 2 0.04
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.75
Consensus pattern (16 bp):
ATTTATTTTTTATTTT
Done.