Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 104 of 195
Found at i:18525325 original size:10 final size:9
Alignment explanation
Indices: 18525206--18525347 Score: 57
Period size: 10 Copynumber: 15.4 Consensus size: 9
18525196 TTCAAAATTT
18525206 TTTA-TTTA
1 TTTATTTTA
*
18525214 TTTGTTTTA
1 TTTATTTTA
18525223 TTTA-TTTA
1 TTTATTTTA
*
18525231 TTTA-TTAA
1 TTTATTTTA
* **
18525239 TTAGATTAGA
1 TT-TATTTTA
18525249 TTTATTTAATA
1 TTTATTT--TA
18525260 TTT-TTTTA
1 TTTATTTTA
18525268 TCTTATTTTTA
1 T-TTA-TTTTA
*
18525279 TTT-TTGT-
1 TTTATTTTA
*
18525286 TTTACTTTTC
1 TTTA-TTTTA
18525296 TTTA-TTT-
1 TTTATTTTA
18525303 TTTATCTTTA
1 TTTAT-TTTA
18525313 TTTATTTTCA
1 TTTATTTT-A
18525323 TTTTTATTTTA
1 --TTTATTTTA
*
18525334 TTCTATTTTC
1 TT-TATTTTA
18525344 TTTA
1 TTTA
18525348 AATAAAAATC
Statistics
Matches: 104, Mismatches: 12, Indels: 35
0.69 0.08 0.23
Matches are distributed among these distances:
7 7 0.07
8 25 0.24
9 26 0.25
10 27 0.26
11 11 0.11
12 8 0.08
ACGTcount: A:0.20, C:0.05, G:0.03, T:0.72
Consensus pattern (9 bp):
TTTATTTTA
Found at i:18525328 original size:39 final size:39
Alignment explanation
Indices: 18525261--18525342 Score: 98
Period size: 39 Copynumber: 2.1 Consensus size: 39
18525251 TATTTAATAT
* *
18525261 TTTTTTATCTTATTTTTATTTTTGTTTTACTTTTCTT-TA
1 TTTTTTATCTTATATTTATTTTTGTTTTA-TTTTATTCTA
18525300 TTTTTTATCTT-TATTTATTTTCAT-TTTTATTTTATTCTA
1 TTTTTTATCTTATATTTATTTT--TGTTTTATTTTATTCTA
18525339 TTTT
1 TTTT
18525343 CTTTAAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
38 15 0.39
39 22 0.58
40 1 0.03
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.77
Consensus pattern (39 bp):
TTTTTTATCTTATATTTATTTTTGTTTTATTTTATTCTA
Found at i:18525494 original size:119 final size:120
Alignment explanation
Indices: 18525350--18525648 Score: 446
Period size: 119 Copynumber: 2.5 Consensus size: 120
18525340 TTTCTTTAAA
* *
18525350 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAA
1 TAAAAATC-AAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
* *
18525415 AATCAAAATTTCCAAAAAAA-TATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
65 AAT-AAAATTTCAAAAAAAAGGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
*
18525471 TAAAAAT-AAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCTTAAAA
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
18525535 ATAAATTTTCAAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
66 ATAAAATTTCAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* *
18525590 TGAAAATCAAAATTTC-AAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
18525649 ACACAAGAAC
Statistics
Matches: 164, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
118 15 0.09
119 134 0.82
120 8 0.05
121 7 0.04
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.34
Consensus pattern (120 bp):
TAAAAATCAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
ATAAAATTTCAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:18525521 original size:59 final size:60
Alignment explanation
Indices: 18525350--18525648 Score: 446
Period size: 59 Copynumber: 5.0 Consensus size: 60
18525340 TTTCTTTAAA
*
18525350 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATC-AAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
18525411 TGAAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
*
18525471 TAAAAAT-AAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCT
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
**
18525530 TAAAAAT-AAATTTTCAAAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAATTTTCAAAAAAAA-TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
* *
18525590 TGAAAATCAAAATTTC-AAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
18525649 ACACAAGAAC
Statistics
Matches: 220, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
59 107 0.49
60 99 0.45
61 14 0.06
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.34
Consensus pattern (60 bp):
TAAAAATCAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:18526715 original size:115 final size:116
Alignment explanation
Indices: 18526512--18526745 Score: 452
Period size: 115 Copynumber: 2.0 Consensus size: 116
18526502 ACCGCATATA
18526512 GTGAACCTTAAGAATGCCTAAACCTAGGATAGAGCCCTTTCTACCTAATGATAGATATACCCTGA
1 GTGAACCTTAAGAATGCCTAAACCTAGGATAGAGCCCTTTCTACCTAATGATAGATATACCCTGA
18526577 AATTAAGACACAAAAAGGGTGTTTATCTAACCATTTTGATTGTTTAACTTT
66 AATTAAGACACAAAAAGGGTGTTTATCTAACCATTTTGATTGTTTAACTTT
18526628 GTGAACCTTAAGAATGCCTAAACCTA-GATAGAGCCCTTTCTACCTAATGATAGATATACCCTGA
1 GTGAACCTTAAGAATGCCTAAACCTAGGATAGAGCCCTTTCTACCTAATGATAGATATACCCTGA
*
18526692 AATTAAGACACAAAAAGGGTGTTTATCTAACCGTTTTGATTGTTTAACTTT
66 AATTAAGACACAAAAAGGGTGTTTATCTAACCATTTTGATTGTTTAACTTT
18526743 GTG
1 GTG
18526746 TATCATTTTC
Statistics
Matches: 117, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
115 91 0.78
116 26 0.22
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (116 bp):
GTGAACCTTAAGAATGCCTAAACCTAGGATAGAGCCCTTTCTACCTAATGATAGATATACCCTGA
AATTAAGACACAAAAAGGGTGTTTATCTAACCATTTTGATTGTTTAACTTT
Found at i:18529696 original size:7 final size:7
Alignment explanation
Indices: 18529680--18529734 Score: 60
Period size: 7 Copynumber: 7.9 Consensus size: 7
18529670 GAAGATGATG
18529680 AAAA-AA
1 AAAAGAA
18529686 AAAAGAA
1 AAAAGAA
18529693 AAAA-AA
1 AAAAGAA
*
18529699 GAAAGAA
1 AAAAGAA
*
18529706 AGAAGAA
1 AAAAGAA
18529713 AAAATGAA
1 AAAA-GAA
18529721 AAAATGAA
1 AAAA-GAA
18529729 AAAAGA
1 AAAAGA
18529735 GATTCAAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
6 9 0.21
7 18 0.43
8 15 0.36
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.04
Consensus pattern (7 bp):
AAAAGAA
Found at i:18529702 original size:20 final size:20
Alignment explanation
Indices: 18529679--18529716 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
18529669 AGAAGATGAT
18529679 GAAAAAAAAAAGAAAAAAAA
1 GAAAAAAAAAAGAAAAAAAA
* *
18529699 GAAAGAAAGAAGAAAAAA
1 GAAAAAAAAAAGAAAAAA
18529717 TGAAAAAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (20 bp):
GAAAAAAAAAAGAAAAAAAA
Found at i:18529707 original size:17 final size:17
Alignment explanation
Indices: 18529684--18529732 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
18529674 ATGATGAAAA
18529684 AAAAAAGAAAAAAAA-G
1 AAAAAAGAAAAAAAATG
18529700 AAAGAAAGAAGAAAAAATG
1 AAA-AAAGAA-AAAAAATG
18529719 AAAAAATGAAAAAA
1 AAAAAA-GAAAAAA
18529733 GAGATTCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 3 0.10
17 6 0.21
18 13 0.45
19 7 0.24
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (17 bp):
AAAAAAGAAAAAAAATG
Found at i:18529732 original size:9 final size:9
Alignment explanation
Indices: 18529682--18529716 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
18529672 AGATGATGAA
18529682 AAAAAAAAG
1 AAAAAAAAG
18529691 AAAAAAAAG
1 AAAAAAAAG
18529700 AAAGAAAGAAG
1 AAA-AAA-AAG
18529711 AAAAAA
1 AAAAAA
18529717 TGAAAAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 12 0.50
10 6 0.25
11 6 0.25
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:18531763 original size:26 final size:26
Alignment explanation
Indices: 18531734--18531786 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18531724 CTGGTCCGAT
18531734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18531760 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18531786 C
1 C
18531787 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18532657 original size:26 final size:26
Alignment explanation
Indices: 18532628--18532680 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18532618 CCAGTCCGAT
18532628 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18532654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18532680 C
1 C
18532681 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18533212 original size:901 final size:897
Alignment explanation
Indices: 18530240--18533555 Score: 4643
Period size: 901 Copynumber: 3.7 Consensus size: 897
18530230 AAGAATATAT
*
18530240 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTTGTA
* * *
18530305 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAATTTTTATGGCAAGAAGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
18530370 TTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTCAAAATGTTTTCAGAAGGAGTTTTGG
131 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* ** * * *
18530435 CCCCAAACTTAGTAGACACGATCCTTGTATTTTTGTTGGTATGCACAAAAAAAATCAGCCAAAAA
196 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACACAAAAAATCAGCTAAAAA
* *
18530500 CTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
261 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGC
*
18530565 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGAT
326 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
18530630 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGTGCACACCC
391 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
*
18530695 CTCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCG
456 C-CCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACG
* * * **
18530760 ATAGTGCCTCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTTCTGTTGCAA
519 ATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * *
18530825 CCCTCGGTCTGGTCTGATCTTAG-CTAGGAATGAACTCAGTTTGCTTAGACTGGGAATGAACTCC
584 CCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * ** * *
18530889 GTATGCCTAAGTCAACCCACGAAACGAGCGTGTGAGCGCTCATTCGGCTAGAGGGGCGGCATGCG
649 GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * **
18530954 CAAGCCT-GGGATCGATAGGGTCCCCCCCTGTGTGCTGCCAATCCTACTACCACAACCCTTGGTC
714 CAAG-CTGGGGATCGATCGGGT-CCCCTCTGCGTGCTG-CAATCCTACTGTCACAACCCTTGGTC
* * * ** * * *
18531018 CGGTCCGATATTAGACTAGGAATGAACTCCATACACCTAAGCCAACCGACGAAACAAGTGGGCGG
776 CGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAG-CGG-GG
* * * *
18531083 GCGGGCGGGCGGGCACAACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAG
838 GCGGGCGGGCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
18531143 GGTGTTAGGTGGGTTTAGGCACATCTTCATATATT-TGCATGCCAAT-ACCATTTTTATGGCTTG
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TTCTGCATGCCAATGA-CATTTTTATGGCTTG
* *
18531206 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGACTCGTTTTCTA
64 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * **
18531271 TTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
129 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT
18531336 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACACAAAAAATCAGCTAAA
194 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACACAAAAAATCAGCTAAA
* *
18531401 AACCCGAAGTGTACAAGATTTTGTGACCATTT-AAAAAAAGTGTCCCCATTTCAGACACATTAAT
259 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAA-TGTCCCCATTTCAGACACTTTAAT
* *
18531465 GGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
323 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* ** *
18531530 TACAAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
388 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
18531595 CCCCCCGGCCCCCTCAATCGTCGGAACCCCAATGCCATCGGTCAGG---T-------T-CTCCGA
453 CCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA
* * * * *
18531649 CGATGGTGCCCTGAAGAAGAAAAATGCGGCACCAGCCCATGCCCGAGCCCAGCATGTGCTGCCAC
517 CGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* *
18531714 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
582 AACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
18531779 TCGTATGCCTAAGTCAACCTACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATG
647 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATG
* *
18531844 CGCAAG-TCGGGGATCGATCGGGTCCCCGTCTGCGTGCTGCTAATCCTACTGTCGCAACCCTCGG
712 CGCAAGCT-GGGGATCGATCGGGTCCCC-TCTGCGTGCTGC-AATCCTACTGTCACAACCCTTGG
* * * * * *
18531908 TCTGATCTAATCTTAGACTGGCAATGAACTCTGTATGCGTAAGCCAATTGACGAAACGAGC--GG
774 TCCGGTCTGATCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGG
* **
18531971 GCGGGCGGGTGGGCACTACGT-CGGCCAGAGAGACATGATGCGCAAGCCGTGGATCGATA-
838 GCGGGCGGGCGGGCACTAC-TCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * *
18532030 GG-GG-AGGTGGGTTTAGGGACATCTTCATATTTTTGCATGCCAATGCCATTTTCATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTTGTA
*
18532093 AATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
18532158 TTTCAGGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG
131 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* *
18532223 CCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACATAAAAAATCAGCTAAAAA
196 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACACAAAAAATCAGCTAAAAA
*
18532288 CTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGC
261 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGC
* * * *
18532353 TACTGGCAGCAAACGTGTAAAATCCCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGAT
326 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
18532418 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
391 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * *
18532483 CCCGG-CCCCCTATCGCTGGAACCCCGATGCCGTCGGTCAGGTTCTCCGACGATACTTTC-ACGA
456 CCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC-TCCGACGA
* *
18532546 TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCCCAAC
520 TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* *
18532611 CCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
585 CCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * **
18532676 TATGCCTAAGTCAACCCACGAAATGAGCATACGAGCGCTCAGCCGGCCAAAGGGACGGGATTTGC
650 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * * * *
18532741 AAGCTGGGGATCGGTCGGGTCTACCTCTACGTGCTGTCGATCCTGCTGTCATAACACTTGATCCG
715 AAGCTGGGGATCGATCGGGTC-CCCTCTGCGTGCTG-CAATCCTACTGTCACAACCCTTGGTCCG
* *
18532806 GTCTGATCTTATACTGGAAATGAACTCCGTATGCCTAAGCCAATCGACAAAACGAGCGAGAGGGC
778 GTCTGATCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCG-G-GGGC
* *** *
18532871 GGGCGGGCGGGCACTATTCCGGCCAGAGAGACGGGATGCATGAGCCTTGGATCGATAG
840 GGGCGGGCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * *
18532929 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCAAATGAAATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTTGTA
*
18532994 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
18533059 TTTCACGAATTTTGAAACTTTTTAAGGGTCGGGATTTTTTAAAATTTTTTAAGAAGGAATTTTGG
131 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* * *
18533124 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGAATGCACA-AAAAAATTCAGGTAAAA
196 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACACAAAAAA-TCAGCTAAAA
* * * *
18533188 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTTAGACACTTTAAAGG
260 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGG
* * * *
18533253 CTACTGGCAACAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
18533318 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC-CATCATGTGCGTACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
18533382 CCCCGGCCCCCCGATCACCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGA
455 CCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGA
* * * * * **
18533447 TGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATTTGCCGTTGCAAC
520 TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* *
18533512 CCTCGGTCCGGTCCGATCTTATACTGGGAATGAACTCCGTATGC
585 CCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
18533556 CTAAGCCAAC
Statistics
Matches: 2144, Mismatches: 229, Indels: 82
0.87 0.09 0.03
Matches are distributed among these distances:
883 27 0.01
884 6 0.00
885 416 0.19
886 9 0.00
887 2 0.00
888 53 0.02
890 1 0.00
891 91 0.04
892 183 0.09
893 1 0.00
894 276 0.13
895 6 0.00
897 1 0.00
898 51 0.02
899 3 0.00
900 32 0.01
901 533 0.25
902 39 0.02
903 412 0.19
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGACATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACACAAAAAATCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
GGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
CTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
AGCTGGGGATCGATCGGGTCCCCTCTGCGTGCTGCAATCCTACTGTCACAACCCTTGGTCCGGTC
TGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGGGCGGGCGG
GCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
Found at i:18534790 original size:699 final size:700
Alignment explanation
Indices: 18532807--18535687 Score: 3537
Period size: 720 Copynumber: 4.1 Consensus size: 700
18532797 CTTGATCCGG
* * * *
18532807 TCTGATCTTATACTGGAAATGAACTCCGTATGCCTAAGCCAATCGACAAAACGAGCGAGAGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAA--A-C--GA--GCG
*** *
18532872 GGCGGGCGGGCACTAT-TCCGGCCAGAGAGACGGGATGCATGAGCCTTGGATCGATAGGGTGGTA
58 GGCGGGCGGGCACTATGT-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * **
18532936 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCAAATGAAATTTTTATGGCTTGTAAATTCAT
122 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
18533001 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACG
187 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
* * * * * * *
18533066 AATTTTGAAACTTTTTAAGGGTC-GGGATTTTTTAAAATTTTTTAAGAAGGAATTTTGGCCCCAA
252 ATTTTTAAAACTTTTTACGGTTCTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * * *
18533130 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGAATGCACAAAAAAATTCAGGTAAAAACTCGAA
317 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAA
* *
18533195 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTTAGACACTTTAAAGGCTACTGG
382 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGG
* * * **
18533260 CAACAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGATGAGGGA
447 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* *
18533325 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC-CATCATGTGCGTACACCCCCCGGC
512 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* *
18533389 CCCCCGATCACCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
577 CCCCCGACCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA---T---G-G-T-G-G-C
* * ** *
18533454 CCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATTTGCCGTTGCAACCCTCGGT
631 CCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCCGCAACCCTCAGT
*
18533519 CCGG-
696 CTGGT
* * * *
18533523 TCCGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCGGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GC-
*
18533588 GGCAAGCGGGCGGGCACTATGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTG
57 GG---GCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* ** ***
18533653 GTAGGTGAGTTTACACACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
119 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
* * **
18533718 CATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTC
184 CATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
*
18533783 ACGATTTTTAAAACTTTTTACGGTT-TGAGATTTTTTAAACTTTTTTCAGAAGGAGTTTTGGCCC
249 ACGATTTTTAAAACTTTTTACGGTTCTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* * * *
18533847 TAAACTTGGTAGACATGAGCCTTGTATTTTTATTGGCATGCACAAAAAAAATCAGCTAAAAACTT
314 CAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTC
18533912 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
379 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
* *
18533977 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCAAGGTTTGATGAG
444 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* * * *
18534042 GGATAGGGGGCCAATATACGGGCCAAGTACCAGCACGCATTGTACATCATGTGCGCACACCCCCC
509 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
18534107 GGCCCCCCCGACCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGGCCCGACAA
574 GG-CCCCCCGACCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGGCCCGACGA
* *
18534172 AGGAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATTTGTTGCCGCAACCCTCAGTCTGGT
638 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCCGCAACCCTCAGTCTGGT
* *
18534235 TC-GATCTTAGACTGGGATTGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * ** *
18534299 GGCACTACGTCGACCAGTA-AGACGGGATTTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGCACTATGTCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
18534363 TGGGCACATCTTCATATTTCTGCATGTCAATG-CATTTTTATGGCTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
18534427 CCGTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTCAA
195 CCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAA
* * * * * *
18534492 AACTTTTTGCGGTTCAG-GATTTTTCAAAATTTTTTCTGAAGGAGTTTTGGCCCCATACTTAGTA
260 AACTTTTTACGGTTCTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
18534556 GACATGATCCTTTTATTTTTTTTGGCATGCATAAAAAAAAATCAGCTAAAAACTCGAAGTGTACA
325 GACATGATCCTTGTATTTTTTTTGGCATGCA-CAAAAAAAATCAGCTAAAAACTCGAAGTGTACA
18534621 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
* * *
18534686 CCTGTAAAATGTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGCGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * *
18534751 CCAATATAAGGGCCAAGTGCAAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCTCG
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CG
* ** * * * ** * ** ** ** *
18534816 ATCTA-C-G-GGCGC--T-CAGCCGGCCAGAG-T-GGCGG-GAT--TTGCAAG-CTGGGGATCAG
583 A-CCACCAGAACCCCAATGCCGCCGGTCAG-GTTCTCCGGCGATGGTGGCCCGAC-GAAGAAAAA
* * * * * * * *
18534869 TCG-GGTC-CC-CCTC-TG--CGTGCTGCC-G-ATCCTACTGCCACAACACTCAATCTGG-
645 T-GTGG-CACCAGCACATGCCCGAGC--CCAGCAT-TTGCTGCCGCAACCCTCAGTCTGGT
*
18534921 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCTGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G--AGCGGGCG
*
18534986 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
62 GGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
18535051 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
127 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
18535116 GGTCCCTTAAGCCTCCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
192 GGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
* * ** *
18535181 TGAAACTTTTTAC-GTTTTGAGATTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTT
257 TAAAACTTTTTACGGTTCTGAGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* * * * * *
18535245 CGTAGACTTGATCCTTGTATTTTTGTTGGCAT-C-GAAAAAAAATTAGCTAAAAACTCAAAGTGT
321 GGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGT
* *
18535308 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
386 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
* *
18535373 AAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATA-G
451 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
** *
18535437 GGGCCAATATAAGGGCCAAACACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCC
516 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * *
18535502 CGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCAGACGATGCTCAGGCGATGGTGCCCCGA
581 CGACCACCAGAACCCCAATGCCGCCGGTCAGG-T-T----C--T-C-C-GGCGATGGTGGCCCGA
** ** ** *
18535567 CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGCGCTATCGTAACCCTCAGTCT-G
635 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCCGCAACCCTCAGTCTGG
*
18535631 A
700 T
* * *
18535632 TCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
18535688 ATACGGGCGC
Statistics
Matches: 1878, Mismatches: 219, Indels: 145
0.84 0.10 0.06
Matches are distributed among these distances:
686 8 0.00
687 66 0.04
688 8 0.00
689 64 0.03
690 163 0.09
691 102 0.05
692 108 0.06
693 76 0.04
694 10 0.01
695 3 0.00
697 2 0.00
698 177 0.09
699 299 0.16
700 3 0.00
702 2 0.00
703 2 0.00
704 1 0.00
705 2 0.00
706 3 0.00
707 4 0.00
708 11 0.01
709 4 0.00
710 7 0.00
711 170 0.09
712 10 0.01
713 2 0.00
714 1 0.00
715 4 0.00
716 48 0.03
717 2 0.00
719 1 0.00
720 447 0.24
721 23 0.01
722 45 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (700 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
GGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAA
ACTTTTTACGGTTCTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGACC
ACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGGCCCGACGAAGAAAAATGTGGC
ACCAGCACATGCCCGAGCCCAGCATTTGCTGCCGCAACCCTCAGTCTGGT
Found at i:18536783 original size:876 final size:872
Alignment explanation
Indices: 18534821--18542782 Score: 9388
Period size: 874 Copynumber: 9.1 Consensus size: 872
18534811 CCTCGATCTA
* ** * *
18534821 CGGGCGCTCAGCCGGCCAGAGTGGCGGGATTTGCAAGCTGGGGATC-AGTCGGGTCCCCCTCTGC
1 CGGGCGCTCAGCCGACCAGAG-GGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGC
* * * * *
18534885 GTGCTGCCGATCCTACTGCCACAACACTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGT
64 GTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
18534950 ATGCCTAAGCCAACCGACGAAACAAGCTGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGG
129 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* *
18535015 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
194 GATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
* *
18535080 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACATGAAGTTTCA
259 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
18535145 TGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGTTTTGAGATTTTTTT
324 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTT
* * * *
18535210 AAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTTCGTAGACTTGATCCTTGTATTTTTGTTGGC
388 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
18535275 AT-CGA-AAAAAAATT-AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
453 ATGC-ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
18535337 GTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAA
517 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* **
18535402 GGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAACACCAGCAC
582 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
18535466 CCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCGCCGGT
647 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGT
* * * *
18535530 CAGGTTCTCAGACGATGCTCAGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGC
712 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* ** * * * * *
18535595 CCGAGCCCAGCATGCGCTATCGTAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTG
777 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* *
18535660 TATGCCTAAGTCAACCCACGAAACGAGCATA
842 TATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
18535691 CGGGCGCTCAACCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTG
1 CGGGCGCTCAGCCGACCAGA-GGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCG
** * * * * * * * * * *
18535756 TGCTATCGATTCTGCTACCGTAACCTTCGGTCTGGTTCAATGTTAGACTGGGAAGGAACTTCGTA
65 TGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
18535821 TGCCTAAGCCAACTGACGAAACGAGCAGGCGAGCGGGCGAGCGGGCACTACACCGGCCAAAGAGA
130 TGCCTAAGCCAACCGACGAAACGAGC--G-G-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
*
18535886 CGGGATGCGCAAG-TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTA
191 CGGGATGCGCAAGCT-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* *
18535950 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGT
255 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* ** **
18536015 TTCATGGCAAGACGACTCGTTTCCTATTTTTCATAATTTTCAAAACTTTTTACGGTTCGGGATTT
320 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTT
* * *
18536080 TTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCCAAACTTGGTATACGTGATCCTTATATTTTTGT
385 TTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18536145 TGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
449 TGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
18536210 AGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
514 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
18536275 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
579 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * *
18536340 CACCCATCACACATCATGTGGGCACACCCCCCCTCGGTCCCCCCGATCGCCAGAACCCTAATGCT
644 CACCCATCGCACATCATGTGCGCACA-CCCCCC-CGG-CCCCCCGATCACCGGAACCCCAATGCC
* * **
18536405 GCCGGTCAAGTTCTACGACGATGCTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGC
706 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * * * *
18536470 ACATGCCTGAGCCTAGCATGTTCTGCCGGAGCCCTCGGTCCGGTCTGATCTTAGACTAGGAATGA
771 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
* *
18536535 ACTCCGTATCCCTAAGTCAACCCACGAAACGAACGTG
836 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
18536572 CGGGCGCTCAGCCGACC-GAGGGCAAGGATGTGCAAGCCAGGGATCGACTAGGTCCCCCTCTGCA
1 CGGGCGCTCAGCCGACCAGAGGGC-GGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCG
* * * * * * *
18536636 TGCTGCCAATCCTACTGCCGCAATCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTA
65 TGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
18536701 TGCCTAAGCCAACCGATGAAACGAGCGGGCCGGCGGGCGGGCATTACGCCGGCCAAAGAGACGAG
130 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * *
18536766 ATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATTTTTCTATGTGC
195 ATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* * *
18536831 CAATCCCATTTTTATGGCCTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCAT
260 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
18536896 GGCAAGATGACTCGCTTTCGATTTTTCACGA-TTTTCATAACTTTTTACGGTTCGGGATTTTTTA
325 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA-AACTTTTTACGGTTCGGGATTTTTTA
* * * *
18536960 AAATTTTTTCGGAACGAGTTTTGTCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
389 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* *
18537025 TGCACAAAAAGATTCAGCTAAAAACTCAAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
454 TGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * *
18537090 CCACATTTCAGACACTTTAATGGCTGCTGGCAACAAACCTATAAAATCT-AAATTGCTCTTTAAG
519 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAAG
* *
18537154 AGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACC
583 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * ** * *
18537219 CATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGCCGGAACCGTAGTGCCACCGGTC
648 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTC
* * * *
18537284 AAGTTCT-C--CGA---T-----GATGGTGCCCCGACGAAGAAAAATGCGGTAGCAGCACAAGCC
713 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
*
18537338 CGAGCCCAGCATGTGCTGCCGTAACCCTCGATCAATTTCGATCTTAGACTGGGAATGAACTCCGT
778 CGAGCCCAGCATGTGCTGCCGCAACCCTCG---------G-TC-----C--GG--T---CT--G-
* * *
18537403 ATGCATAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAATGAGCGTG
818 AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * ** *
18537459 CGGGCGCTCAGCCGACCAAAGGG-GTGCGATGCGTATGCCGGGGATCGGTTGGGTCCCCCTCTAC
1 CGGGCGCTCAGCCGACCAGAGGGCG-G-GATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGC
* * * ** *
18537523 GTGCTGCCGATCCTGTTGCCACAACCCTCAGCCCAGTCCAATCTTAGACTGGGAATGAACTCCG-
64 GTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * *
18537587 ATGCCTAAACCAACCGACGAAACGAGCGGGCGAGTGGGCGGGTGAGCACTATGCCAGCCAGAGAG
129 ATGCCTAAGCCAACCGACGAAACGAGCGGGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAG
* *
18537652 ACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGT-GGTTGAGGCACATCTTCATATTTCTA
190 ACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
18537716 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
255 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * * *
18537781 TTCATGGCAAGATGACTCGTTTTCTATTTTTCACTATTTTTAAAACTTTTTCCGGTTTGGGATTT
320 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTT
* *
18537846 TTTAAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGT
385 TTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
18537911 TGGCATGCACAAAAAAATTCAGGTAAAAA-TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
449 TGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
18537975 AGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
514 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
18538040 TAAGGCGGTGTGAGTTCTCGAGGTTGGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAG
579 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
18538105 CACCCA-CTGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGC
644 CACCCATC-GCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGC
* *
18538168 TGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
708 CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* ** * ** * *
18538233 ATGCCCGAGCCCAGAATGTGCTATCGCAAGCCTCGGTCTAGTCCGATCCTAGACTGGGAATGAAC
773 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
*
18538298 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
838 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * * *
18538333 CGGGTGCTTAGCCTG-CTAGAGGGGCAGGATGCGCAAGTCAGGGATCG-GTCGGGTCCCCCTCTA
1 CGGGCGCTCAGCC-GACCAGA-GGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTG
* * * * * ** * * * *
18538396 TGTGCTGTCGATCCTGCTACCACAACACTTGGTCCGGTCCGATCCTGGACTGGGAATGAACTTCG
63 CGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* * *
18538461 TATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGAGCGGGCACTACGCCAGCCAGAGAGACG
128 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * * **
18538526 GGATGCTCAAGAC-GTCGATCGATAGGATGGTAGGTGGGTTTA-GCACATCTTCAGATTTCTGTG
193 GGATGCGCAAG-CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
* * *
18538589 TGCCAATGACATTTTTATGGCTTGTACATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
257 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * *
18538654 CATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAGTTTTTACGGTTCAGGATTTTG
322 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * * *
18538719 CAAAATTTTTTTGGAATGAGTTTTGGCCCCAAACTTGGTAGATGTGGTCCTTGTATTTTTGTTGG
387 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * * **
18538784 CATGCACAAAAGAAGTCAACTAAAAGCTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
452 CATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * *
18538849 GTCCCCATTCCAAACACTTTAGTGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
517 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
18538914 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
582 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
** ** * * *
18538979 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTTGATTGCCGAAACCCTAATGCCGCCAGT
647 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGT
* * ** ** * * * *
18539044 CAGGTTCTTCGGCGATGCTAAGACGATGGTGCCCCGGTGAAGAAAAATGTGACACTAGCACATGT
712 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
**
18539109 TTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCTGGTCTGATCGTAGATTGGGAATGAACTCCG
777 CCGAGCCCAGCATGTGCTGCCGCAACCC----TC-GGTC----C--------GG--T---CT--G
* * * * *
18539174 TATGCTTAGACTAGGATTGAACTCGGTATGCCTAAGTCAACGCACGAAATGAGCGTG
818 -AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* ** * * * * * *
18539231 CAGTTGCTCAGGCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGCTGGGTCCCCCTCTACG
1 CGGGCGCTCAGCCGACCAGA-GGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCG
** * * * ** *
18539296 TGCTATCGATCCTGCTACTGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATTAACTCCGTA
65 TGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
*
18539361 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCAGCCAGAGAGA
130 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGA
* * * *
18539426 CGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGC
191 CGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* *
18539491 ATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
256 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
*
18539556 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGTTTTT
321 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* * * * * *
18539621 TTAAAATTTTTTCGAAAGGACTTTTGGCCGCAAACTTGATAGAAGAGATCCTTGTATTTTTGTTG
386 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * *
18539686 GCATGCACAAAAACATTAAGCTAAAAAGTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
451 GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
18539751 TGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATTCTCTTTA
516 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
18539816 ATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
581 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
18539881 CCCATCGCAAATCATGTGCGAACACCCCCCGGCCCCCCATCACAGGAACCCCCCCCGATCACCGA
646 CCCATCGCACATCATGTGCG--CA-----C--ACCCCC--C-C-GG----CCCCCCGATCACCGG
* ** * * * **
18539946 AACCCCAATGCCGTCATTCAGGTTCTCCGGCGATGTTCTGGTGATGGTGCCCCGACGAAGAAAAA
694 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * * * *
18540011 TGTGGCACCAGCACATGCCGGAGCCCAGCATGTGCAGTCACAACCCTCTGTCGGTCCGATCTTAG
759 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TCGGTCCG------G
* * *
18540076 ACTGGGAATGAATTCCGTGTGCCTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAA
814 --T----CTG-A-T-C---T---TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
*
18540141 ACGATCGTG
864 ACGAGCGTG
* * * * **
18540150 CGGGCGCTCAGTCGACCAGAGAGGCGGGATGCACAAGCCGAGGATTGACCAGGTCCCCCTCTGCG
1 CGGGCGCTCAGCCGACCAGAG-GGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCG
* * * * * * *
18540215 TGCTGCCAATCCCGCTGCTGTAGCCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATA
65 TGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * ** * * *
18540280 TGCCTAAGCCAACCGATGAAACGAACGGGTAGGCGGGCGGGCACTATGCCGACTAGAGAGACGGG
130 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * * *
18540345 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTTTGCATGC
195 ATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* * * *
18540410 CAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGATGTTTCTT
260 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
18540475 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTA
325 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* * * *
18540540 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTACATGTGATCCTTGTATTTTTGTCGGCAT
390 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
18540605 GCACAAAAAAAGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTC
455 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
18540670 CCTATTTTGAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
520 CCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
18540735 GGGTGTGAGTTCTCGAGGTTTGATGAGGTG-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACA
584 GGGTGTGAGTTCTCGAGGTTTGATGAGG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
18540799 CATCGCACATCATGTGCGCACA--CCCCCGGCCCCCTTGATCATCGGTACCCCAATGCCGCCGGT
648 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCACCGGAACCCCAATGCCGCCGGT
* *
18540862 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCTCATGC
712 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * *
18540927 CTGAGCCCAGCATGCT-CTACCGCAACCCTCGGTCTGAT-TCAATCTTAGACTGGGAATGAACTC
777 CCGAGCCCAGCATG-TGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTC
* *
18540990 CATATGCCTAAGTCAACCCACGAAACGAGCATG
840 CGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * *
18541023 CGGGCGCTCAGCC-A--A-AGGGACGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACG
1 CGGGCGCTCAGCCGACCAGAGGG-CGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCG
* * * *
18541084 TGCTGCCGATCCTGCTACCGCAACCCTCAATCTGGTCCAATCTTAGATTGGGAATGAACTCCGTA
65 TGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
18541149 TGCCTAAGGCAACTGACGAAACGAGCGGGCGGGCAGGCGGGAACTACG-CGGCCAGAGAGACGGG
130 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * *
18541213 ATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTTTGCGTGC
195 ATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* * * *
18541278 CAATGCCATTTTTATGGCTTATAAATTCATACAGTGGTCCCATAAGCCTTCACGTGAAGCTTCAT
260 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
18541343 GGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
325 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* * *
18541408 AATTTTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTATACGTGATCCATGTATTTTTTTTGGCAT
390 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
18541472 GCAC-AAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
455 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
18541536 CCCATTTTAGACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
520 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
18541601 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
585 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * ** *
18541666 CCACACATCATGTGCGCACACCCCAGCCGGCCCCCCCGATCATCGGAACCCCAATGCCATCAGTC
650 TCGCACATCATGTGCGCACACCCC-CCCGG-CCCCCCGATCACCGGAACCCCAATGCCGCCGGTC
* * *
18541731 A-GTT-T----C--T-CT--GGCGATGGTGCCCCAACGACGAAAAATGCGGCACCAGCACATGCC
713 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * *
18541785 CAAGCCCAGCATGTGCTGCCGTAACCCTCGCTCCAGTTTGATCTTAGATTAGGAATGAACTCTGT
778 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATC-----TT----A-G-A--CTG-
* * *
18541850 TTGCTTAAACTAAGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTA
829 --G----------GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* *
18541906 TGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGC
1 CGGGCGCTCAGCCGACCAGA-GGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGC
* * * * *
18541970 ATGCTGCTGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGAAATGAACTTCGT
64 GTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
18542035 ATGCCTAAGCCAATCGATGAAACGA----GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
129 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
*
18542096 GATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTT
194 GATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
18542161 CCAATGCC------A-----T-T---TT--T---ATGG---CTT--G-----AC-----GTTTCA
259 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * ** * *
18542191 TGGCAAGATGACTCGTTTTCAATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTT-
324 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
** * * * *
18542255 AAATTTTTTCGGAATTACTTTTGTCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCT
389 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* *
18542320 TGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
454 TGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
18542385 CCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
519 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
18542450 GGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCC
584 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
** * * *
18542515 ATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCATTGGAACCCCAATGCCGTCGTTT
649 ATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCACCGGAACCCCAATGCCGCCGGTC
* * ** **
18542579 AGGTTCTCCGGCGATGTTCTAACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCC
713 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* *** * * * *
18542644 TGAGTTGAGCATTTGCTGCCGCAACCCTCGGTCTGATC-GATCTTAGACTGGGAATGAACTCTGT
778 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * *
18542708 ATGCCTAAGCCAACCAATGAAACGAGCGGG
843 ATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
18542738 CGGGCACT-ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
1 CGGGCGCTCA-GCCGACCAGAG-GGCGGGATGCGCAAGCCGGGGAT
18542783 TGATAGGGTG
Statistics
Matches: 6141, Mismatches: 744, Indels: 452
0.84 0.10 0.06
Matches are distributed among these distances:
831 2 0.00
832 71 0.01
842 1 0.00
845 3 0.00
847 1 0.00
848 51 0.01
849 114 0.02
850 203 0.03
853 2 0.00
854 3 0.00
856 2 0.00
857 71 0.01
858 5 0.00
859 68 0.01
860 1 0.00
861 64 0.01
862 3 0.00
864 4 0.00
865 138 0.02
866 62 0.01
867 54 0.01
868 242 0.04
869 140 0.02
870 209 0.03
871 378 0.06
872 155 0.03
873 95 0.02
874 396 0.06
875 286 0.05
876 370 0.06
877 56 0.01
878 5 0.00
879 10 0.00
880 114 0.02
881 184 0.03
883 72 0.01
884 84 0.01
885 1 0.00
886 4 0.00
887 208 0.03
888 90 0.01
889 43 0.01
890 317 0.05
891 151 0.02
892 3 0.00
894 8 0.00
895 1 0.00
896 2 0.00
897 10 0.00
898 279 0.05
899 2 0.00
900 64 0.01
901 3 0.00
902 64 0.01
903 390 0.06
905 5 0.00
907 1 0.00
909 1 0.00
910 1 0.00
912 7 0.00
913 5 0.00
914 6 0.00
915 330 0.05
916 136 0.02
917 2 0.00
918 1 0.00
919 181 0.03
920 103 0.02
921 2 0.00
922 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (872 bp):
CGGGCGCTCAGCCGACCAGAGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGT
GCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
TGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGG
TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTG
Found at i:18539949 original size:19 final size:18
Alignment explanation
Indices: 18539913--18539951 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
18539903 CACCCCCCGG
*
18539913 CCCCCCATCACAGGAACC
1 CCCCCCATCACAGAAACC
*
18539931 CCCCCCGATCACCGAAACC
1 CCCCCC-ATCACAGAAACC
18539950 CC
1 CC
18539952 AATGCCGTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.26, C:0.59, G:0.10, T:0.05
Consensus pattern (18 bp):
CCCCCCATCACAGAAACC
Found at i:18540124 original size:26 final size:26
Alignment explanation
Indices: 18540073--18540126 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
18540063 GGTCCGATCT
* *
18540073 TAGACTGGGAATGAATTCCGTGTGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
18540099 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
18540125 TA
1 TA
18540127 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:18540563 original size:915 final size:902
Alignment explanation
Indices: 18536521--18542714 Score: 6867
Period size: 903 Copynumber: 7.0 Consensus size: 902
18536511 GGTCTGATCT
* * *
18536521 TAGACTAGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * ** * * *
18536586 ACC-GA-GGGCAAGGATGTGCAAGCCAGGGATCGACTAGGTCCCCCTCTGCATGCTGCCAATCCT
66 -CCAGAGGGGC-GGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCT
* * * * * * **
18536649 ACTGCCGCAATCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
129 GCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
18536714 CGATGAAACGAGCGGGCCGGCGGGCGGGCATTACGCCGGCCAAAGAGACGAGATGCGCAAGCTGT
194 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCGT
* * ** *
18536779 GGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATTTTTCTATGTGCCAATCCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* * *
18536844 ATGGCCTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
18536909 GCTTTCGATTTTTCACGA-TTTTCATAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
389 GTTTTCTATTTTTCACGATTTTTGA-AACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGA
* * * * *
18536973 ACGAGTTTTGTCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAGAT
453 AGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AT
* * *
18537038 TCAGCTAAAAACTC-AAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGA
517 TAAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGA
* * * *
18537102 CACTTTAATGGCTGCTGGCAACAAACCTATAAAATCT-AAATTGCTCTTTAAGAGGGTGTGAGTT
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGGGTGTGAGTT
*
18537166 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCA
645 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * ** * * * *
18537231 TGTGCG-CA----C--ACCCCC-CCGACCCCCCGATCGCCGGAACCGTAGTGCCACCGGTCAAGT
710 TGTGCGACACCCCCGGCCCCCCTCCGGCCCCCCGATCACCGAAACCCCAATGCCGCCAGTCAGGT
* * * *
18537288 TCT-C--CGA-----T---GATGGTGCCCCGACGAAGAAAAATGCGGTAGCAGCACAAGCCCGAG
775 TCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAG
* * ** * *
18537342 CCCAGCATGTGCTGCCGTAACCCTCGATCAATTTCGATCTTAGACTGGGAATGAACTCCGTATGC
840 CCCAGCATGTGCAGCCGCAACCCTCG-TCGGTCT-GATCTTAGATTGGGAATGAACTCCGT-TGC
*
18537407 A
902 C
* *
18537408 TAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * ***
18537473 ACCAAAGGGGTGCGATGCGTATGCCGGGGATCGGTTGGGTCCCCCTCTACGTGCTGCCGATCCTG
66 -CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTG
* * * * ** ** *
18537538 TTGCCACAACCCTCAGCCCAGTCCAATCTTAGACTGGGAATGAACTCCG-ATGCCTAAACCAACC
130 CTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18537602 GACGAAACGAGCGGGCGAGTGGGCGGGTGAGCACTATGCC-AGCCAGAGAGACGGGATGCGCAAG
195 GACGAAACGAGCGGGC----GGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCACAAG
** * *
18537666 TTGTGGATCGATAGGGTGGTAGGT-GGTTGAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
255 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
18537730 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
320 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
18537795 ACTCGTTTTCTATTTTTCACTATTTTTAAAACTTTTTCCGGTTTGGGATTTTTTAAAAATTTTTT
385 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-TAAATTTTTT
* * *
18537860 CGAAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
449 CGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAA
* * * *
18537925 AAATTCAGGTAAAAA-TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
513 AAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
* *
18537989 AGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAG
578 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18538054 TTCTCGAGGTTGGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCA-CTGCACA
643 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACA
* * **
18538118 TCATGTGCG-CA-------CACCCC-CCGGCCCCCCGATCACCGGAACCCCAATGCCGCTGGTCA
707 TCATGTGCGACACCCCCGGCCCCCCTCCGGCCCCCCGATCACCGAAACCCCAATGCCGCCAGTCA
* * * *
18538174 GGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCC
772 GGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT
* * * *
18538239 GAGCCCAGAATGTGCTA-TCGCAA-GC-C-TC-G---G-TC------T----A-G---TCCGAT-
837 GAGCCCAGCATGTGC-AGCCGCAACCCTCGTCGGTCTGATCTTAGATTGGGAATGAACTCCGTTG
18538280 CC
901 CC
* * *
18538282 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTTAGCCT
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-
* * * ** * *
18538347 GCTAGAGGGGCAGGATGCGCAAGTCAGGGATCGGTCGGGTCCCCCTCTATGTGCTGTCGATCCTG
65 GCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTG
* * ** * * * * *
18538412 CTACCACAACACTTGGTCCGGTCCGATCCTGGACTGGGAATGAACTTCGTATGCCTAAGCCAACC
130 CTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18538477 GACGAAATGAGCGGGCGGGCGAGCGGGCACTACGCC-AGCCAGAGAGACGGGATGCTCAAGACGT
195 GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCACAAGCCGT
* * * * *
18538541 CGATCGATAGGATGGTAGGTGGGTTTA-GCACATCTTCAGATTTCTGTGTGCCAATGACATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* *
18538605 ATGGCTTGTACATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *** *
18538670 ATTTTCTATTTTTCACGATTTTTGAAAGTTTTTACGGTTCAGGATTTTGCAAAATTTTTTTGGAA
389 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAA
* * * *
18538735 TGAGTTTTGGCCCCAAACTTGGTAGATGTGGTCCTTGTATTTTTGTTGGCATGCACAAAAGAAGT
454 GGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AA-T
* * * *
18538800 CAA-CTAAAAGCTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAA-A
517 TAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TAAGA
* *
18538863 CACTTTAGTGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
18538928 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** ** *
18538993 GTGCG-CA----C--ACCCCC-CCGGCCCCTTGATTGCCGAAACCCTAATGCCGCCAGTCAGGTT
711 GTGCGACACCCCCGGCCCCCCTCCGGCCCCCCGATCACCGAAACCCCAATGCCGCCAGTCAGGTT
* ** ** * * * **
18539050 CTTCGGCGATGCTAAGACGATGGTGCCCCGGTGAAGAAAAATGTGACACTAGCACATGTTTGAGC
776 CTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGC
* * * *
18539115 CCAGCATGTGCTGCCGCAACCCTTGGTCTGGTCTGATCGTAGATTGGGAATGAACTCCGTATGCT
841 CCAGCATGTGCAGCCGCAACCC-TCGTC-GGTCTGATCTTAGATTGGGAATGAACTCCGT-TGCC
* * * * * * ** *
18539180 TAGACTAGGATTGAACTCGGTATGCCTAAGTCAACGCACGAAATGAGCGTGCAGTTGCTCAGGCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GCC
* * * **
18539245 GCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGCTGGGTCCCCCTCTACGTGCTATCGATCCTG
65 GCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTG
* * * *
18539310 CTACTGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACC
130 CTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
18539375 GACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCC-AGCCAGAGAGACGGGATGCACAAG
195 GACGAAACGAGCGGGCGGGC--G--GGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCACAAG
* * *
18539439 CCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAAT
255 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
18539504 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
320 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
18539569 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGG-TTTTTTTAAAATTTTTT
385 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT-AAATTTTTT
* * * * *
18539633 CGAAAGGACTTTTGGCCGCAAACTTGATAGAAGAGATCCTTGTATTTTTGTTGGCATGCACAAAA
449 CGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18539698 ACATTAAGCTAAAAAGTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
514 A-ATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
* * *
18539763 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATTCTCTTTAATGGGGTGTGAG
578 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18539828 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAAT
643 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
18539893 CATGTGCGAACACCCCCCGGCCCCCCATCACAGGAACCCCCCCCGATCACCGAAACCCCAATGCC
708 CATGTGCG-ACA-CCCCCGGCCCCCC-TC-C-GG----CCCCCCGATCACCGAAACCCCAATGCC
* * * ** *
18539958 GTCATTCAGGTTCTCCGGCGATGTTCTGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGC
764 GCCAGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * * *
18540023 ACATGCCGGAGCCCAGCATGTGCAGTCACAACCCTCTGTCGGTCCGATCTTAGACTGGGAATGAA
829 ACATGCCTGAGCCCAGCATGTGCAGCCGCAACCCTC-GTCGGTCTGATCTTAGATTGGGAATGAA
*
18540088 TTCCGTGTGCC
893 CTCCGT-TGCC
* * * *
18540099 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGATCGTGCGGGCGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * * *
18540164 ACCAGAGAGGCGGGATGCACAAGCCGAGGATTGACCAGGTCCCCCTCTGCGTGCTGCCAATCCCG
66 -CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTG
* * * * *
18540229 CTGCTGTAGCCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
130 CTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** * * *
18540294 GATGAAACGAACGGGTAGGCGGGCGGGCACTATGCCGACTAGAGAGACGGGATGCGCAAGCCGTG
195 GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTG
* * *
18540359 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTTTGCATGCCAATGCCATTTTTA
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* * * *
18540424 TGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGATGTTTCTTGGCAAGACGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
18540489 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCAGAAG
390 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAG
* * * * * *
18540554 GAGTTTTGGCCCCAAACTTGGTACATGTGATCCTTGTATTTTTGTCGGCATGCACAAAAAAAGTC
455 GACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTA
* * * *
18540619 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCTATTTTGAGACA
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTAAGACA
*
18540684 CTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
18540749 GAGGTTTGATGAGGTG-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGCACATCATG
648 GAGGTTTGATGAGG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * ** *
18540813 TGCGCACACCCCCGG-CCCCCT---------TGATCATCGGTACCCCAATGCCGCCGGTCAGGTT
712 TGCG-ACACCCCCGGCCCCCCTCCGGCCCCCCGATCACCGAAACCCCAATGCCGCCAGTCAGGTT
* * * *
18540868 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCTCATGCCTGAGC
776 CTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGC
*
18540933 CCAGCATGCT-CTA-CCGCAA-CC-C-TC-G---G-TC-T-GA-T-----TCAA-T-C--T---
841 CCAGCATG-TGC-AGCCGCAACCCTCGTCGGTCTGATCTTAGATTGGGAATGAACTCCGTTGCC
* *
18540972 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCA---G
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* *
18541034 CCAAAGGGACGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
66 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* ** * * *
18541099 TACCGCAACCCTCAATCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGGCAACTG
131 TACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
18541164 ACGAAACGAGCGGGCGGGCAGGCGGGAACTACG-CGGCCAGAGAGACGGGATGCACAAGCTGTGG
196 ACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGG
* *
18541228 ATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTTTGCGTGCCAATGCCATTTTTAT
261 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * * * *
18541293 GGCTTATAAATTCATACAGTGGTCCCATAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTTGT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
18541358 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
391 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGG
* * * *
18541423 A-TTTTGGCCCCAAACTTGGTATACGTGATCCATGTATTTTTTTTGGCATGCACAAAAAATTCAG
456 ACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTAAG
* *
18541487 CTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
521 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTT
*
18541552 TAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
586 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
18541617 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCG
651 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * **
18541682 -CACACCCCAG-------CCGGCCCCCCCGATCATCGGAACCCCAATGCCATCAGTCA-G-T-T-
716 ACAC-CCCCGGCCCCCCTCCGG-CCCCCCGATCACCGAAACCCCAATGCCGCCAGTCAGGTTCTC
* * * **
18541735 ------T-CTCTGGCGATGGTGCCCCAACGACGAAAAATGCGGCACCAGCACATGCCCAAGCCCA
779 CGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCA
* * * * * * *
18541793 GCATGTGCTGCCGTAACCCTCGCTCCAGTTTGATCTTAGATTAGGAATGAACTCTGTTTGCT
844 GCATGTGCAGCCGCAACCCTCG-T-CGGTCTGATCTTAGATTGGGAATGAACTCCG-TTGCC
* ** * * ** *
18541855 TAAACTAAGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTATGGGCACTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
18541920 ACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCTGATCCTG
66 -CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTG
* * * *
18541985 CTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAATC
130 CTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18542050 GATGAAACGA----GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTG
195 GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTG
* *
18542111 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTTCCAATGCC------A
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
*
18542170 -----T-T---TT--T---ATGG---CTT--G-----AC-----GTTTCATGGCAAGATGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** * * *
18542206 TTTTCAATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGA-TTTTTTAAATTTTTTCGGAAT
390 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAG
* * * * *
18542270 TACTTTTGTCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTG
455 GACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTA
18542335 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACAC
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACAC
*
18542400 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCG
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
18542465 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCACATCATGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * * *
18542530 CG-CA-------CACCCC-CCGGCCCCCCCGATCATTGGAACCCCAATGCCGTC-GTTTAGGTTC
714 CGACACCCCCGGCCCCCCTCCGG-CCCCCCGATCACCGAAACCCCAATGCCGCCAG-TCAGGTTC
* * ** **
18542585 TCCGGCGATGTTCTAACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCTGAGTT
777 TCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCC
* * * * * *
18542650 GAGCATTTGCTGCCGCAACCCTCGGTCTGATC-GATCTTAGACTGGGAATGAACTCTGTATGCC
842 CAGCATGTGCAGCCGCAACCCTC-GTC-GGTCTGATCTTAGATTGGGAATGAACTCCGT-TGCC
18542713 TA
1 TA
18542715 AGCCAACCAA
Statistics
Matches: 4585, Mismatches: 557, Indels: 359
0.83 0.10 0.07
Matches are distributed among these distances:
847 1 0.00
848 55 0.01
849 102 0.02
850 201 0.04
851 1 0.00
854 2 0.00
856 1 0.00
857 61 0.01
858 33 0.01
859 68 0.01
860 1 0.00
861 3 0.00
862 1 0.00
863 4 0.00
864 9 0.00
865 135 0.03
866 61 0.01
867 51 0.01
868 236 0.05
869 142 0.03
870 74 0.02
871 371 0.08
872 116 0.03
873 58 0.01
874 150 0.03
875 34 0.01
876 8 0.00
878 2 0.00
879 2 0.00
880 3 0.00
881 4 0.00
882 2 0.00
883 71 0.02
884 84 0.02
886 2 0.00
887 215 0.05
888 86 0.02
889 47 0.01
890 314 0.07
891 146 0.03
892 9 0.00
893 2 0.00
894 2 0.00
896 7 0.00
897 3 0.00
898 280 0.06
899 5 0.00
900 58 0.01
902 74 0.02
903 381 0.08
905 2 0.00
910 1 0.00
912 5 0.00
913 1 0.00
914 6 0.00
915 325 0.07
916 151 0.03
917 2 0.00
918 2 0.00
919 206 0.04
920 106 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
TACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGG
ACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTAAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
ACACCCCCGGCCCCCCTCCGGCCCCCCGATCACCGAAACCCCAATGCCGCCAGTCAGGTTCTCCG
GCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGC
ATGTGCAGCCGCAACCCTCGTCGGTCTGATCTTAGATTGGGAATGAACTCCGTTGCC
Found at i:18543417 original size:26 final size:26
Alignment explanation
Indices: 18543381--18543457 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
18543371 CAGTCCGATT
*
18543381 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18543407 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18543433 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
18543458 ACTAAGTCAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18544832 original size:898 final size:896
Alignment explanation
Indices: 18542664--18545944 Score: 4112
Period size: 917 Copynumber: 3.7 Consensus size: 896
18542654 ATTTGCTGCC
* * * *
18542664 GCAACCCTCGGTCTGATCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCAATGAA
1 GCAACCCTCAGTCTGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* *
18542729 ACGA---------GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTG
66 ACGAGCCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCG
*
18542785 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTTCCAATGCCATTTTTATGGCT
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
* * *
18542850 TGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTGATGGCAAGATGACTCATTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
* * * ** *
18542915 TATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GAAATTACT
261 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGT-GT
* * * * * * *
18542979 TTTGTG-CCCAAACTTGGTAGACGTCATCCTTGTAATTTTGTTGGCTTGGACAAAACAATTGAGC
325 TTTG-GCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAACAAATCAGC
18543043 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
18543108 AATGGCTACT-AGTAGCAAACCTGTAGAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
454 AATGGCTACTGA-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
18543172 GTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
518 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * ** *
18543237 CACACCCCCCCGGCCCCCCAATCGCCGGAACCCTAATGCTACCGGTCA-ATT-T---C--T-C-C
583 CACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTC
* * * **
18543293 -GACGATGGTGCCCCGACGAAGAAAAATACAG-CACCAGCACATGCCCGGGCCCAGCATGTGCAA
648 TGGCGATGGTGCCCCGACGAAGAAAAATGCAGTCACCAGCACATGCCCGAGCCCAGCATGTGCTG
18543356 CCGCAACCCTTGGTCCAGTCCGATTTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
713 CCGCAACCC----T-C-G---G----T---CT-GG--T----T-TG-AT-CTTAGACTGGGAATG
*
18543421 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGCGTGC
752 AACTCCGTATGCTT-GACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * *
18543486 GGGCGCTCAGTCGGCCAGAGGGGCGACATGCGTAAGCCGGGGATCGATCGAGTCTCTCTCTGCGT
815 GGGCGCTCAGTCGGCCAAAGGGGCG-GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
18543551 GCTACCGATCCTGCTACT
879 GCTACCGATCCTGCTACT
* * * * * *
18543569 GCGACCCTCAGCCCGGTCGAATCTTAGACTAGGAATGAACTCCGTACGCCTAA-CCAACCGACGA
1 GCAACCCTCAGTCTGGTCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * *
18543633 AACGAGCAGGCGGGCGGGCGGGAGGGCACTACGTCGGCCA-AAGAGATGGGATCCGCAAGCCGTG
65 AACGAGC---CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAA-AGACGGGATGCGCAAGCCGTG
18543697 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
126 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* *
18543762 TGGCTTGTAACTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
191 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
* * * * *
18543827 TTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTTGGAATTTTTTAAAATTTTTTCGGAAG
256 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
18543892 GAT-TTTTGGCCCCAAACTTGGTAGACATGATCCCTGTATTTTTTTTGGCATGCACAATAA-AAA
321 G-TGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAA-AACAAA
* * * *
18543955 TCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACCCTTTGAAAAAAGTGTCCCCACTTAAGAC
384 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
18544020 ACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
449 ACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
18544085 CGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATG
514 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
18544150 TGCGCACACCCCCCCGGCCCCCCGAT-GCCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGA
579 TGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGA
*
18544214 TGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGC-GTCACCAGCACATGCCCGAGCCCAGTATG
643 TGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCAGTCACCAGCACATGCCCGAGCCCAGCATG
* *
18544278 TGCTGCCACAGCCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTAG
708 TGCTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTT-GACT-G
**
18544343 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTAGCTCAGTCGGCCAAAGG
771 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAAAGG
* * *
18544408 GGCAGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACAGATCCTACTACT
836 GGC-GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACT
* *
18544470 GCAAGCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTACCGATGA
1 GCAACCCTCAGTCTGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
** * * * * *
18544535 AACGA-CCGGGCGGGCGGGCGGTTACTATGCCAGCCAGAAAGACGGGATGCGAAAGTCGTGGATC
65 AACGAGCCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATC
* ** * * **
18544599 GATAGGTTGGTAGGTACGTTTAGGCATATCTTCATATTTTTTTGTGCCAATGCCATTTTTATGGC
130 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
* *
18544664 TTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
195 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
* ** * *
18544729 CCATTTATT-ATAATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTG
260 CTATTT-TTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTG
18544793 TTTTGGCCCCAAACTTGGTAGACGTGAT-CCTGGTATTTTTGTTGGCATGCACAAAA-AAATTCA
324 TTTTGGCCCCAAACTTGGTAGACGTGATCCCT-GTATTTTTGTTGGCATGCACAAAACAAA-TCA
18544856 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
387 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * * *
18544921 TTAATGGCTACTGGCAGTAAGCATGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
452 TTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
18544986 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCGCATCATGAGT
517 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
18545051 GTACA-CCCCCCGCCCGCCCCGATCGTCGAAACCACAATGCCGCCGGTCAGGTTCTCCGGCGATG
582 GCACACCCCCCCGGCC-CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATG
** * * * * * *
18545115 CTCTGGCGATGGTGCCCCGGTGAAGAACAATGCGGCCCTAGCACAAGCACAAGCCCAAGCCTAGC
645 CTCTGGCGATGGTGCCCCGACGAAGAAAAATGCAG---T--CACCAGCACATGCCCGAGCCCAGC
* *
18545180 ATGTGCTGCCGCAACCCTCGGTC-----CGA---T---CT--G-AT---CT---TA-GATTG---
705 ATGTGCTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTGACT
* * *
18545221 GGAATGAACTCCTTATGCCTAAGTCAACCCATGAAACGACCGTGCGGGCGCTCAGTCGGCCAAAG
770 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAAAG
* * * * * * *
18545286 GGGTGGGATGCGCAAGCCCGGGATCGACCGGGTCCCCCTTTGCGTGCTGCCGATCCTGTTGCT
835 GGG-CGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACT
* * * * * *
18545349 GCAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAATTTCATATGCCTAAGCCAACTGAAGA
1 GCAACCCTCAGTCTGG-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * * * *
18545414 AACGAGTGGGCGGACGGGCGGGCGGGCACTACGTCGACCAGAGAGATGGGATGCGCAAG-CGATG
65 AACGA---GCCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCG-TG
*
18545478 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTA
126 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* * *
18545543 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTATGTGAAGTTTCATGGTAAGAC-ACTCA
191 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
* **
18545607 TTTTCTATTTTTCACGATTTTAAAAACCTTTTTACGGTTCGGGATTTTTTAAAATATTTTT-TAA
256 TTTTCTATTTTTCACGATTTTTAAAA-CTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCGGA
* * *
18545671 AGGAGTTTTGGCCCCAAACTTGGTAGA-GTGATCCCTATATTTTTGTTGGCATGCACAAAACAAT
319 AGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAACAAA
*
18545735 TCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
384 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
18545800 ACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCT
449 ACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
18545865 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATG
514 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
18545930 TGCGCACACCCCCCC
579 TGCGCACACCCCCCC
18545945 CGATCGTTGG
Statistics
Matches: 2099, Mismatches: 216, Indels: 144
0.85 0.09 0.06
Matches are distributed among these distances:
879 172 0.08
880 1 0.00
881 2 0.00
882 241 0.11
883 221 0.11
884 8 0.00
885 2 0.00
888 2 0.00
891 2 0.00
892 1 0.00
894 2 0.00
897 19 0.01
898 463 0.22
899 67 0.03
900 4 0.00
901 193 0.09
902 18 0.01
903 3 0.00
904 1 0.00
905 68 0.03
906 30 0.01
908 1 0.00
910 2 0.00
911 2 0.00
914 1 0.00
916 22 0.01
917 472 0.22
918 8 0.00
919 1 0.00
921 1 0.00
922 2 0.00
923 1 0.00
924 1 0.00
925 1 0.00
926 2 0.00
927 62 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GCAACCCTCAGTCTGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
ACGAGCCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
TATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTT
TTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAACAAATCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCTGG
CGATGGTGCCCCGACGAAGAAAAATGCAGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTGACTGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGATGCG
CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACT
Found at i:18545898 original size:882 final size:878
Alignment explanation
Indices: 18543432--18545943 Score: 3411
Period size: 898 Copynumber: 2.8 Consensus size: 878
18543422 ACTCCGTATG
* *
18543432 CTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* ** * * * *
18543497 CGGCCAGAGGGGCGACATGCGTAAGCCGGGGATCGATCGAGTCTCTCTCTGCGTGCTACCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * *
18543562 TGCTACTGCGACCCTCAGCCCGG-TCGAATCTTAGACTAGGAATGAACTCCGTACGCCTAA-CCA
131 TGCTACTGCAACCCTCAGTCTGGTTTG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18543625 ACCGACGAAACGAGCAGGCGGGCGGGCGGGAGGGCACTACGTCGGCCAAAGAGATGGGATCCGCA
195 ACCGAAGAAACGAG--GGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGATGGGATGCGCA
*
18543690 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCC
*
18543755 ATTTTTATGGCTTGTAACTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
18543820 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTTGGAATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* * *
18543885 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCCTGTATTTTTTTTGGCATGCACAAT
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAA-
* * * *
18543950 AAAAATCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACCCTTTGAAAAAAGTGTCCCCACTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18544015 AAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18544080 GTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
18544145 TCATGTGCGCACACCCCCCCGGCCCCCCGATGCCGGAACCCCAATGCCGTCGGTTAGGTTCTCCG
712 TCATGTGCGCACA-CCCCCCGCCCCCCCGATGCCGAAACCACAATGCCGCCGGTCAGGTTCTCCG
* * * *
18544210 ACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGT
776 ACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGTCACAAGCACAAGCCCAAGCCCAGC
* *
18544275 ATGTGCTGCCACAGCCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAA
841 ATGTGCTGCCACAACCCTCGGTC----TCGA--TT--ACT-GGAAT--A
*
18544324 CTCCGTATGCTTGGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
1 CT---TA-GATT-G----GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
** * *
18544389 TAGCTCAGTCGGCCAAAGGGGCAGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGC
57 GCGCTCAGTCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGC
* * * *
18544454 TACAGATCCTACTACTGCAAGCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
122 TACCGATCCTGCTACTGCAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * ** * * * *
18544519 CTAAGCCTACCGATGAAACGA--CCGGGCGGGCGGGCGGTTACTATG-CCAGCCAGAAAGACGGG
187 CTAAGCCAACCGAAGAAACGAGGGCGGGCGGGCGGGCGGGCACTACGTCGA-CCAGAGAGATGGG
* * * ** * **
18544581 ATGCGAAAGTCGTGGATCGATAGGTTGGTAGGTACGTTTAGGCATATCTTCATATTTTTTTGTGC
251 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGC
*
18544646 CAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
316 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
18544711 GGCAAGACGACTCGTTTTCCATTTATT-ATAATTTTTGAAACTTTTTACGGTTTGGGATTTTTTA
381 GGCAAGACGACTCGTTTTCTATTT-TTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTA
*
18544775 AAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTGGTATTTTTGTTGGC
445 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCT-GTATTTTTGTTGGC
18544839 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
509 ATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * *
18544904 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAGCATGTAAAATCTCGAATGCTCTTTAAG
573 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
18544969 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
638 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
18545034 CATCGCGCATCATGAGTGTACACCCCCCGCCCGCCCCGATCGTCGAAACCACAATGCCGCCGGTC
703 CATCGCACATCATGTGCGCACACCCCCCGCCC-CCCCGAT-GCCGAAACCACAATGCCGCCGGTC
* ** *
18545099 AGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGTGAAGAACAATGCGGCCCTAGCACAAGCA
766 AGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGC-G---T--CACAAGCA
* *
18545164 CAAGCCCAAGCCTAGCATGTGCTGCCGCAACCCTCGGTC-CGA-T-CT-G-AT-
825 CAAGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCTCGATTACTGGAATA
* * *
18545212 CTTAGATTGGGAATGAACTCCTTATGCCTAAGTCAACCCATGAAACGACCGTGCGGGCGCTCAGT
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
18545277 CGGCCAAAGGGGTGGGATGCGCAAGCCCGGGATCGACCGGGTCCCCCTTTGCGTGCTGCCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
18545342 TGTTGCTGCAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAATTTCATATGCCTAAGCCAA
131 TGCTACTGCAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18545407 CTGAAGAAACGAGTGGGCGGACGGGCGGGCGGGCACTACGTCGACCAGAGAGATGGGATGCGCAA
196 CCGAAGAAACGA--GGGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGATGGGATGCGCAA
18545472 G-CGATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCC
259 GCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCC
* * *
18545536 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTATGTGAAGTTTCATGGTAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
18545601 C-ACTCATTTTCTATTTTTCACGATTTTAAAAACCTTTTTACGGTTCGGGATTTTTTAAAATATT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTTACGGTTTGGGATTTTTTAAAAT-TT
** *
18545665 TTT-TAAAGGAGTTTTGGCCCCAAACTTGGTAGA-GTGATCCCTATATTTTTGTTGGCATGCACA
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACA
*
18545728 AAACAATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
516 AAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18545793 TTCAGACACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGT
580 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
18545858 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTA
645 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
18545923 CATCATGTGCGCACACCCCCC
710 CATCATGTGCGCACACCCCCC
18545944 CCGATCGTTG
Statistics
Matches: 1426, Mismatches: 160, Indels: 78
0.86 0.10 0.05
Matches are distributed among these distances:
879 174 0.12
881 6 0.00
882 246 0.17
883 212 0.15
884 10 0.01
885 2 0.00
888 2 0.00
891 2 0.00
892 3 0.00
894 2 0.00
895 2 0.00
896 2 0.00
897 15 0.01
898 464 0.33
899 68 0.05
900 3 0.00
901 157 0.11
902 15 0.01
903 1 0.00
905 40 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (878 bp):
CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
TGCTACTGCAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGAAGAAACGAGGGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGATGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGCCCCCCCGATGCCGAAACCACAATGCCGCCGGTCAGGTTCTCCGACGAT
GCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGTCACAAGCACAAGCCCAAGCCCAGCATGTG
CTGCCACAACCCTCGGTCTCGATTACTGGAATA
Found at i:18546012 original size:26 final size:26
Alignment explanation
Indices: 18545983--18546035 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18545973 CCGGTCCGAT
18545983 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
18546009 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18546035 C
1 C
18546036 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18546920 original size:26 final size:26
Alignment explanation
Indices: 18546891--18546995 Score: 192
Period size: 26 Copynumber: 4.0 Consensus size: 26
18546881 CTAGTCCAAT
18546891 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18546917 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18546943 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18546969 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18546995 C
1 C
18546996 CTAAGTTAAT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18547851 original size:956 final size:956
Alignment explanation
Indices: 18545983--18547925 Score: 3110
Period size: 956 Copynumber: 2.0 Consensus size: 956
18545973 CCGGTCCGAT
*
18545983 CTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
*
18546048 ACGAAACGAACGTGCAGGCGCTCAGCTAGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCG
66 ACGAAACGAACGTGCAGACGCTCAGCTAGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCG
* * * * *
18546113 GGTCCACCTCTGCATGCTGCCGATCCTGCTACTGTAAACCTCGGTTCGGTCTGATCTTAGACTGG
131 GGTCCACCTCTACATGCTGCCGATCCTGCTA-GGCAAACCTCGGTCCGGTCCGATCTTAGACTGG
* * * * *
18546178 CAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGAGGGCCGGCGGGCGGGCA
195 CAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAACGGGC--G-GGGCCGGCGAGCGGGCA
* * * * *
18546243 CTTCGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
257 CTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGC
* *
18546308 ACATCTTCATATTTCTATTTGCCAATGCCATTTTCATGGCTTGTAAATTCATACGAAGGTCCCTT
322 ACATCTTCATATTTCTATGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACGAAGCTCCCTT
* ** *
18546373 AAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTCAAAACTT
387 AAGCATTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACAATTTTCAAAACTT
* *
18546438 TTTACGGTTCGGGACTTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
452 TTTACGGTTCGAGACTTTTTTAAAATATTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
18546503 GATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
517 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
18546568 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTATA
582 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTATA
18546633 AAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
647 AAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
18546698 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACC
712 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACC
18546763 GGAACCCCAATATCGTCGGTCAGGTTCTGCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAA
777 GGAACCCCAATATCGTCGGTCAGGTTCTGCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAA
** * *
18546828 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGATCTAGTCCAATCT
842 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTCCAATCT
18546893 TAGACTGGGAATGAACTCCATATGCTTAGG-CTGGGAATGAACTCCATATG
907 TAGACTGGGAATGAACTCCATATGCTT-GGACTGGGAATGAACTCCATATG
* * *
18546943 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAATCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * **
18547008 ACGAAATGAGCGTGCAGACTCTCA-ATCGGCCAGAGGGGTGGGATGCGCCTGTCGGGGATCGGCC
66 ACGAAACGAACGTGCAGACGCTCAGCT-AGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCC
*
18547072 GGGTCC-CTCTCTACATGCTGTCGATCCTGCT-GGCACAACCCTCGGTCCGGTCCGATCTTAGAC
130 GGGTCCAC-CTCTACATGCTGCCGATCCTGCTAGGCA-AA-CCTCGGTCCGGTCCGATCTTAGAC
* *
18547135 TAGG-AATGAACTCCGTATACCTAAGCCAACCGACGAAACGAACGGGC-GGGCGGGCGAGCGGTC
192 T-GGCAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAACGGGCGGGGCCGGCGAGCGGGC
*
18547198 ACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGGATCTATAGGGTAGTAGGTGGGTTTAGG
256 ACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGG
* *
18547263 CACATCTTCATATTTTCTATGTGCCAATGCTATTTTTATGGCTTGTAAATTCATAC-AATGCTCC
321 CACATCTTCATA-TTTCTATGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACGAA-GCTCC
* **
18547327 CTTAAGCATTCACGTGAAGTTTCATGGCAAGACGGCCCGTTTTCTATTTTTCACAATTTTTGAAA
384 CTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACAATTTTCAAAA
** * * *
18547392 CTTTTTGTGGTTTGAGA-TTTTTTAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
449 CTTTTTACGGTTCGAGACTTTTTTAAAATATTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
18547456 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGA
514 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
18547521 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
579 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCT
* *
18547586 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
644 ATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
18547651 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATC
709 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATC
*
18547716 ACCGGAACCCCAATGTCGTCGGTCAGGTTCTGCGGCGATGCTCCGGTGATGGTGCCCCGACGAAG
774 ACCGGAACCCCAATATCGTCGGTCAGGTTCTGCGGCGATGCTCCGGTGATGGTGCCCCGACGAAG
* * *
18547781 AAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTCCGA
839 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTCCAA
* * *
18547846 TCTTAGACTGGGAATGAACTTCGTATGCTTGGACTGGGAATGAACTCCGTATG
904 TCTTAGACTGGGAATGAACTCCATATGCTTGGACTGGGAATGAACTCCATATG
18547899 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18547926 CTAAGTCAAC
Statistics
Matches: 906, Mismatches: 69, Indels: 20
0.91 0.07 0.02
Matches are distributed among these distances:
955 2 0.00
956 578 0.64
957 115 0.13
958 2 0.00
959 4 0.00
960 203 0.22
961 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (956 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAACGTGCAGACGCTCAGCTAGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCG
GGTCCACCTCTACATGCTGCCGATCCTGCTAGGCAAACCTCGGTCCGGTCCGATCTTAGACTGGC
AATGAACTCCGTATACCTAAGCCAACCGACGAAACGAACGGGCGGGGCCGGCGAGCGGGCACTAC
GCCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTATGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACGAAGCTCCCTTAAGC
ATTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTA
CGGTTCGAGACTTTTTTAAAATATTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTATAAAAT
CTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAA
CCCCAATATCGTCGGTCAGGTTCTGCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTCCAATCTTAGA
CTGGGAATGAACTCCATATGCTTGGACTGGGAATGAACTCCATATG
Found at i:18547887 original size:26 final size:26
Alignment explanation
Indices: 18547847--18547925 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
18547837 CCAGTCCGAT
*
18547847 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18547873 CTTGGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18547899 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18547925 C
1 C
18547926 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18555284 original size:26 final size:26
Alignment explanation
Indices: 18555245--18555297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18555235 CCGATCGGAT
*
18555245 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
18555271 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
18555297 C
1 C
18555298 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:18555473 original size:887 final size:891
Alignment explanation
Indices: 18553743--18556374 Score: 3473
Period size: 899 Copynumber: 2.9 Consensus size: 891
18553733 GTCCGTGACA
* *
18553743 CCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
18553808 TTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
66 TTTCATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * * **
18553873 ACTCATTTTTTATTTTTCACGATTTTTAAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTTC
131 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTGA-GGTTTGGGATTTTTTAAAATTTTTTC
** *
18553938 GGAAGGATTTTTGGCCCCA-ACCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
195 AAAAGGAGTTTTGGCCCCAGA-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAA
* * * *
18554002 AAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTATCCCCATTTT
258 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-AAAAAAGTGTCCCCATTTC
** *
18554067 AGACACTTTAATGGCTACTAACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAG
322 AGACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
**
18554132 TTCTCGAGGTTTGATGATAGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
387 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACAT
** * * * * * *
18554196 CATACGTGCACATCCCCCCGGCCCCCCAATCGTCGAAACCCCAATGTCGTCGATCAGGTTCTCCG
451 CAT--GTGCACAT---ATC--CCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCG
* * ** *
18554261 GTGATGCTCCGATGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCTTGAGCCCAGC
509 GCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGC
* ** * * * *
18554326 ATGTGCCACCGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGATTAGAC
574 ATGTGCTACCGCAACCCTCGGTCCGATC-GATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
* * * * *
18554391 AGGGAATGAACTCCGTAAGCGTAAGTCAAACCACAAAACGAGCATGCGGGCGCTCAGCCGGCCAG
638 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAG
* * * * *
18554456 AGGGGCGGGATGCACAAGCCAGGGATTGACCGGGTCCCCCTTTGCGTGCTGCCGATCCTACTGTT
703 AGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTTTGCGTGCTGCCGATCCTACTGCT
* * * ** *
18554521 GCAACCCTCGGTTTAGTTCAATCTTAGACTGGGAATGAACTATGTATGCCTAAGCCAATCGAC-A
768 GCAACCCTC-G-TGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA
* *
18554585 AA-A-CAAGC-G-GG-C-GGGCGAGCAGGCAGTAGGCCGGCCAGAGAGAC-GAGATGCGCAAG
830 AACAGCAAGCGGTGGACGGGGCGAGCAGGCACTACGCCGGCCAGAGAGACAG-GATGCGCAAG
* * **
18554641 CCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGGGTGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
18554706 TTTCATGGCTTCTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
66 TTTCATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
18554771 AGTCGTTTTCTATTTTTCATGATTTTCAAAACTTTCTGAGGTTTGGGATTTTTTAAAATTTTTTC
131 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT-TGAGGTTTGGGATTTTTTAAAATTTTTTC
18554836 AAAAGGAGTTTTGGCCCCAGAC-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC
195 AAAAGGAGTTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-
18554900 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-AAAAAGTGTCCCCATTTCAG
259 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAGTGTCCCCATTTCAG
18554964 ACACTTTAATGGCTACT-GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
324 ACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
18555028 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCA
389 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC-CATCGCACATCA
* * * *
18555093 TGTGCGCATATCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTGTCCGACGATGCTT
453 TGTGCACATATCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
* * *
18555158 CGGCGATGGTGCCTCGATGAAG-AAAATGCGTCACCAGCACATGCTCGAGCCCAGCATGTGCTAC
518 CGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTAC
* *
18555222 CGTAACCCTCGGTCCGATCGGATCTTAGACTGCGAATGAACTCTGTATGCTTAGACTGGGAATGA
583 CGCAACCCTCGGTCCGATC-GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
* ** * * *
18555287 ACTCCGTATGCCTAAGTCGACCCACGAAACGAGTGTGCGGGCCCCCAGCCGGTCAGAGGGGCGGG
647 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * *** *
18555352 ATGCGCAAGTCGGGGGTCGACCAGGTCCCCATCTACGTGCCATCGATCCTACTACTGCAACCCTC
712 ATGCGCAAGTCGGGGATCGACCGGGTCCCCCTTTGCGTGCTGCCGATCCTACTGCTGCAACCCTC
* *
18555417 GATCCGATCCGATCTTAGACTGGGAATGAAATCCGTATACCTAAGCCAACCGACAAAACGAGCAA
777 G-T--GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-AGCAA
* **
18555482 GCGGGTGGACGGGTGGGCGGGTGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
838 GC-GGTGGAC--G-GGGCGAGCAGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
* *
18555540 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
18555605 TTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTGACGTTAAGTTTCATGGCAAGACG
66 TTTCATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
**
18555670 ACTCGTTTTCCGTTTTTCATGATTTTCAAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTC
131 ACTCGTTTTCTATTTTTCATGATTTTCAAAAC-TTTTGAGGTTTGGGATTTTTTAAAATTTTTTC
* * * *
18555735 AAAAGGAGTTTTGGCCCCAGACTTGGCAGACATTATCCTTGTATTTTGGTTGGCATGCACAAAAA
195 AAAAGGAGTTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
18555800 CATTCATCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
260 -ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-AAAAAAGTGTCCCCATTTCA
* * *
18555865 GACACTTTAATGGCTACTGGTACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGT
323 GACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
18555930 TCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACGAACAACCATCGCACATC
388 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-ACCATCGCACATC
* * * * *
18555995 ATGTGCACACACCCCTCCGGCACCCCGGTCGTCAGAACCCTAATACCGCCGGTCATGTTCT-CGG
452 ATGTGCACATA----TCC--C-CCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGG
* * *
18556059 CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCCGCACATGCACGAGCCCAGCA
510 CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCA
* ** * * * ** *
18556124 TATGCTGTCGCAACCCTCGGTCTGGTTCGATCTTAAACTGGGAATGAACTCCATATTCTTAGACT
575 TGTGCTACCGCAACCCTCGGTC-CGATCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
* * * *
18556189 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAGCCGACCAAA
639 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGA
* * * *
18556254 GGGGTGTGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTTTGCGTGTTGCCGATCCTACTGGC-
704 GGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTTTGCGTGCTGCCGATCCTACT-GCT
* *
18556318 GCAACCCTC-TG-TCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGA
768 GCAACCCTCGTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
18556375 TGAAACGAAC
Statistics
Matches: 1522, Mismatches: 175, Indels: 67
0.86 0.10 0.04
Matches are distributed among these distances:
886 2 0.00
887 240 0.16
888 64 0.04
890 2 0.00
891 5 0.00
893 8 0.01
894 66 0.04
895 77 0.05
896 4 0.00
897 80 0.05
898 192 0.13
899 242 0.16
900 82 0.05
902 37 0.02
903 111 0.07
904 2 0.00
905 42 0.03
906 1 0.00
907 3 0.00
908 1 0.00
909 30 0.02
910 227 0.15
911 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTCATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTGAGGTTTGGGATTTTTTAAAATTTTTTCA
AAAGGAGTTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCATCGCACATCATGT
GCACATATCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA
CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGC
AACCCTCGGTCCGATCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
GCAAGTCGGGGATCGACCGGGTCCCCCTTTGCGTGCTGCCGATCCTACTGCTGCAACCCTCGTGA
TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAGCAAGCGGTGGA
CGGGGCGAGCAGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
Found at i:18556525 original size:162 final size:157
Alignment explanation
Indices: 18556261--18556553 Score: 383
Period size: 162 Copynumber: 1.8 Consensus size: 157
18556251 AAAGGGGTGT
* * ***
18556261 GATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTTTGCGTGTTGCCGATCCTACTGGCGCAACCCT
1 GATGCGCAAGTCGGGGATCGACCAGGTCCCCC-TTGCGTGCCACCGATCCTACTGGCGCAACCCT
* * * *
18556326 CTGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGTGCGG
65 CTGTCCGATCTTAGAATGGGAATGAAATCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGG
18556391 GCGGGCGCCCAGTCGGTTAGAGGGGAGG
130 GCGGGCGCCCAGTCGGTTAGAGGGGAGG
*
18556419 GATGCGCAAGTCGGGGGTCGACCAGGTGCCCCC-TGCGTGCCACCGATCCTACT-GCTGCAACCC
1 GATGCGCAAGTCGGGGATCGACCAGGT-CCCCCTTGCGTGCCACCGATCCTACTGGC-GCAA-CC
* * *
18556482 TCGATCTGGTCCGATCTTAGACTGGGAATGAAATCTGTATGCCTAAGCCAACCGACGAAACGAGC
63 -C--TCT-GTCCGATCTTAGAATGGGAATGAAATCCGTATGCCTAAGCCAACCGACGAAACGAAC
18556547 GGGCGGG
124 GGGCGGG
18556554 TGGGTGGGCG
Statistics
Matches: 115, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
156 2 0.02
157 21 0.18
158 26 0.23
159 6 0.05
161 3 0.03
162 57 0.50
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (157 bp):
GATGCGCAAGTCGGGGATCGACCAGGTCCCCCTTGCGTGCCACCGATCCTACTGGCGCAACCCTC
TGTCCGATCTTAGAATGGGAATGAAATCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGG
CGGGCGCCCAGTCGGTTAGAGGGGAGG
Found at i:18560614 original size:897 final size:895
Alignment explanation
Indices: 18556335--18560658 Score: 5503
Period size: 889 Copynumber: 4.8 Consensus size: 895
18556325 TCTGTCTGAT
* * * * * * *
18556335 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGTGCGGGCGGGCGCC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-A---GCGTGCGGGCGCT
* *** * * * * * * * * **
18556400 CAGTCGGTTAGAGGGGAGGGATGCGCAAGTCGGGGGTCGACCAGGTGCCCC-CTGCGTGCCACCG
62 CAGCCGACCAGAGGGGCGAGATGCACAAGCCGGGGATCGATCAGGTCCCCCTCTACGTGCTGCCG
* * * * * *
18556464 ATCCTACTGCTGCAACCCTC-GATCTGGTCCGATCTTAGACTGGGAATGAAATCTGTATGCCTAA
127 ATCCTGCTGCCGTAACCCTCAG-TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
** *
18556528 GCCAACCGACGAAACGAGCGGGCGGGTGGGTGGGCGGGCACTACGCCTACCAGAGAGACAAGATG
191 GCCAACCGACGAAACGA----G-GGG-GGG-GGGCGGGCACTACGCCGGCCAGAGAGACAGGATG
* * *
18556593 CGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCAA
249 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * * * *
18556658 TGCCATTTTTATGGCTTTTAAATTTATACAATGGTCCCTCAAGCCATCACGTGAAGTTTCATGGC
314 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGC
* * ** *
18556723 AAGACGACTCGTTTTCTATTTTTCACGATTTTCT-AAACTTTTTCCGGTTGGAGATTTTTGAAAA
379 AAGACGACTCGTTTTATATTTTTCACGATTTT-TGAAACTTTTTACGGTTCTAGATTTTTTAAAA
* * * *
18556787 TTTTTTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGATGTGATCCTTGGATTTTTGTTGGCATGT
443 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
18556852 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
508 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
** *
18556917 CATTTC-GAACACTTTAATGGCTACTGGCAGGAAGCCTGTAAAATCTCAAATGCTCTTTAA-GGG
573 CATTTCAG-ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
18556980 GTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
637 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * ** * *
18557045 CGCACAACATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACACCAATGCCGTCGGTCAGG
702 CGCACATCATGTGCGCACACCCCCC-GACCCCCAGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* ** * * * * *
18557110 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCATCAGCACATGCTCGA
766 TTCTCCGGCGATGCTCCGGTGATGGTGCCCTGGCGAAGAAAAATGCAGCACCAGCACATGCCCGA
* * *
18557175 GCCCAGCATGTGTTGCTGCAA--------CC---C---TC--AGTCT-GG--T----T-CG-AT-
831 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
18557214 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
18557279 CGGCCAGAGCGACGAGATGCACAAGCCGGGGATTGGTCGGGTCCCTCTCTACGTTCTGCCGATCC
66 CGACCAGAGGGGCGAGATGCACAAGCCGGGGATCGATCAGGTCCCCCTCTACGTGCTGCCGATCC
* * *
18557344 TGCTACCGTAACCCTCGGT-TGGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGTAACCCTCAGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
18557408 ACCGACGAAACGAGCGGGCGGTCAGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCC
195 ACCGACGAAACGAG-GGG-GG-GGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCC
* * * *
18557473 GTGGATCGATAGGGTGGTTGGTGGGTTTAGGTATATCTCCATATTTCTGCATGCCAATGCCATTT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
18557538 TTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGAC
322 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGAC
* * **
18557603 TTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATAGTT-TGAGATTTTTTAAAATTTTTTCG
387 TCGTTTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTCT-AGATTTTTTAAAATTTTTTCG
* * * *
18557667 GGAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGCATGCACAAAAAA
451 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18557732 ATTGAGCCAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAG
516 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * * *
18557797 ACACTTTAATAGCTACTGG-AAGCAATCCCGTAAAATCTCAAATGCTTTTTAAGGGCGTGTGAGT
581 ACACTTTAATGGCTACTGGCAA-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
18557861 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
645 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
18557926 CTGTGCGCACACCCCCCGACCCCCTCGATCGCCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGG
710 ATGTGCGCACACCCCCCGACCCCC-AGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * * * *
18557991 CGATGCTCCGGTGATAGTGCCCCGACGAA-AAAAAAGCTGCACCACCACATGCCCGAGCCCAGCA
774 CGATGCTCCGGTGATGGTGCCCTGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCA
* * *
18558055 TGTGCTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
839 TGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * * * * * * * *
18558112 CTTAGACTGGGAATGACCTATGCAAGCCTAAGCCAACCCATGCAACGAGCGTACGGGGGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
18558177 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATC-AGTCAAGTCCCCCTCTACGTGCTGCCGATC
66 CGACCAGAGGGGCGAGATGCACAAGCCGGGGATCGA-TCAGGTCCCCCTCTACGTGCTGCCGATC
* *
18558241 CTGCTGCCGTAACCCTCAGTCTGATCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCGA
130 CTGCTGCCGTAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
18558305 ACCGACGAAACGAGCGGAGGGGCGGACGGGCGGGCGCTACGCCAGCCAGAGAGACAGGATGCGCA
195 ACCGACGAAACGA---G-GGGG-GG--GGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCA
* *
18558370 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
253 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18558435 ATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGA
318 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGA
* *
18558500 CGACTCATTTTATATTTTTCACGATTTTTGAAACTTTTTTGCGGTTCTAGATTTTTTAAAATTTT
383 CGACTCGTTTTATATTTTTCACGATTTTTGAAAC-TTTTTACGGTTCTAGATTTTTTAAAATTTT
* *
18558565 TTC-GAATGGATTTTTGGCCGCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
447 TTCGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
18558629 AAAACATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
511 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18558694 TTCAGAGACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGT
576 TTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
18558759 GCGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
641 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** *
18558824 CATCATGTGCGCACACCCCCCGGCCCCCCTGATCGTCGGAACCAAAATGCCGTCGGTCAGGTTCT
706 CATCATGTGCGCACACCCCCC-GACCCCCAGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
18558889 TCGGCGATGCTCCGGCGATGGTGCCCCT-GCGAAGAAAAATGCAGCACCAGCACATGCCCGAACC
770 CCGGCGATGCTCCGGTGATGGTG-CCCTGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* ** * ** * * *
18558953 CAGCATCTATTGCTGCAACCCTCAATCCGGTCTGATCTCAGACTGGGAATGAACTCTGTACG
834 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18559015 CTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
18559080 CGACCAGAGGGGCGGGATGCATAGGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCT
66 CGACCAGAGGGGCGAGATGCACAAGCCGGGGATCGATCAGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
18559145 TGCTG-TGACAACCCTCGGTCCGATCCGATCATAGACTGGGAATGAACTCCATATGCCTAAGCCA
131 TGCTGCCG-TAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18559209 AGCGATGAAACGA-------GCG-GGGCACTACGCCGGCCAGAGAAACAGGATGCGCAAGCCGTG
195 ACCGACGAAACGAGGGGGGGGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTG
* *
18559266 GATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTA
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
18559331 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCACGGCAAGACGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCG
* * * * **
18559396 TTTTCTATTTTTCACAATTTTTGAAACTTTTTAGCGGTTCAAGATTTTTCAAAATTTTTTCTAAA
390 TTTTATATTTTTCACGATTTTTGAAACTTTTTA-CGGTTCTAGATTTTTTAAAATTTTTTCGGAA
* *
18559461 GGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATT
454 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
18559526 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
519 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
18559591 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
584 CTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
18559656 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGT
649 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * * *
18559721 GCTCACTCCCCCC-AGCCCCCAGATTGTCGGAGCCCCAATACCGCCGGTCAGGATCACCGACGAT
714 GCGCACACCCCCCGA-CCCCCAGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
*
18559785 GCTCCGGTGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
778 GCTCCGGTGATGGTGCCCTGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTG
** * * *
18559850 CTGCCGTGACCCTCGGTCCAGTCTGATCTTAGACTGTGAATGAACTCCATATG
843 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18559903 CTTGGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * ** *
18559968 CGGCCAGCA-GGGTGAGATGCGTAAGCCAGGGATCGACCAGGTGCCCCTCTGTGTGCTACCGATC
66 CGACCAG-AGGGGCGAGATGCACAAGCCGGGGATCGATCAGGTCCCCCTCTACGTGCTGCCGATC
*
18560032 CTGCTGCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGTAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18560097 ACCAATGAAAC-ATGTGGGTGGGGGGTGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCC
195 ACCGACGAAACGA-G-GGG-GGGGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCC
* * * *
18560161 GTGGATAGATAGGGTGGGAGGTGGGCTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
18560226 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGTAAGACGAG
322 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGAC
* *
18560291 TCGTTTTATATTTTTCACGATTTTTGAAACCTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGG
387 TCGTTTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTCTAGATTTTTTAAAATTTTTTCGG
* * * * *
18560356 AAGGAGTTTTGGCACCAAACTTGGTAGACATGATCATTATATATTTGTTGGCATGCACAAAAAAA
452 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
18560421 CTT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
517 -TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
18560485 ACACTTTAATGGCTACTGGCAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
581 ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18560550 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
18560615 TGTGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAAT
711 TGTGCGCACA-CCCCCC-GACCCCCAGATCGTCGGAACCCCAAT
18560659 CGTCGGGCCA
Statistics
Matches: 2995, Mismatches: 375, Indels: 130
0.86 0.11 0.04
Matches are distributed among these distances:
871 2 0.00
872 419 0.14
873 150 0.05
875 46 0.02
876 78 0.03
877 1 0.00
878 1 0.00
879 42 0.01
880 1 0.00
883 1 0.00
886 2 0.00
887 5 0.00
888 314 0.10
889 473 0.16
890 4 0.00
891 1 0.00
895 1 0.00
896 2 0.00
897 317 0.11
898 335 0.11
899 21 0.01
900 5 0.00
901 185 0.06
902 331 0.11
903 223 0.07
904 35 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAGGGGCGAGATGCACAAGCCGGGGATCGATCAGGTCCCCCTCTACGTGCTGCCGATCC
TGCTGCCGTAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGGGGGGGGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGT
TTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTCTAGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGACCCCCAGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
CCGGTGATGGTGCCCTGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18561304 original size:772 final size:768
Alignment explanation
Indices: 18559907--18561383 Score: 2121
Period size: 772 Copynumber: 1.9 Consensus size: 768
18559897 CATATGCTTG
* * * * *
18559907 GACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
1 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGAGCTCAGCCGAC
** * *
18559972 CAGCAGGGTGAGATGCGTAAGCCAGGGATCGACCAGGTGCCCCTCTGTGTGCTACCGATCCTGCT
66 CAGCAGGGTGAGATGCGTAAGCCAGGGATCGACCAGGTGCCCCTCTACGTGCTACCAATCCTGCA
* * *
18560037 GCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAA
131 GCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAA
* * * * ** *
18560102 TGAAACATGTGGGTGGGGGGTGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGAT
196 AGAAACACGGGGGCGGGGGCCGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCATGGAT
* * *
18560167 AGATAGGGTGGGAGGTGGGCTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
261 AGATAGGGTGGGAGGTGGGCTTAGGCACATCTTAATATTTCTACATGCCAATGCCATTTTTATGG
* *
18560232 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGTAAGACGAGTCGTTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGAGTCGTTG
* * *
18560297 TATATTTTTCACGATTTTTGAAACCTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAG
391 TATATTTTTCACGATTTTTAAAACCTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGAAAAGAG
* *
18560362 TTTTGGCACCAAACTTGGTAGACATGATCATTATATATTTGTTGGCATGCACAAAAAAACTTAGC
456 TTTTGGCACCAAACTTGGTAAACATGATCATTATATATTTGTTGGCATGCACAAAAAAACTTAAC
**
18560427 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
521 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTAACCCCATTTCAGACACTTT
* * *
18560492 AATGGCTACTGGCAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
586 AATGGCCACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
18560557 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGC
651 TTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGC
18560622 ACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATCGTCGGGCCAATTTCA
716 ACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATCGTCGGGCCAATTTCA
*
18560675 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGAGCTCAGCCGAC
1 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGAGCTCAGCCGAC
** ** *
18560740 CAG-AGGGAT-AGGAT-TTTCAAGCC-GAGGATCGGTCGGGT-CCCTCTCTACGTGCTACCAATC
66 CAGCAGGG-TGA-GATGCGT-AAGCCAG-GGATCGACCAGGTGCCC-CTCTACGTGCTACCAATC
18560800 CTGCAGCCGCAACCCTC-GATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
126 CTGCAGCCGCAACCCTCAG-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
18560864 AACCAAAGAAACGAACGGGCGGACGGGCGGCCGGGCACTACG-TCGGTC-GAGAGACGGGATGCG
190 AACCAAAGAAAC--ACGGG-GG-CGGG-GGCCGGGCACTACGCT-GGCCAGAGAGACAGGATGCG
* * * * *
18560927 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTCGGCACATCTTAATATTTCTACGTGCCAATG
249 CAAGCCATGGATAGATAGGGTGGGAGGTGGGCTTAGGCACATCTTAATATTTCTACATGCCAATG
* * * *
18560992 CTATTTTTATGGCTTTTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
314 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAA
* * * *
18561057 GATG-GCTCGTTGTCTATTTTTCATGATTTTTAAAACTTTTTACGGTT-TGAGATTTTTTAAAAT
379 GACGAG-TCGTTGTATATTTTTCACGATTTTTAAAACCTTTTACGGTTCTG-GATTTTTTAAAAT
* * * * * *
18561120 TTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCGTGCA
442 TTTTTCGAAAAGAGTTTTGGCACCAAACTTGGTAAACATGATCATTATATATTTGTTGGCATGCA
* *
18561185 C-AAAAAAGTTCAACTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTAACCC
507 CAAAAAAACTT-AACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTAACCC
* * *
18561249 CATTTTAGACACTTTAATGGCCACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGG
571 CATTTCAGACACTTTAATGGCCACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
18561314 TGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATC
636 TGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACC
18561379 GCACA
701 GCACA
18561384 CCCCCAATGC
Statistics
Matches: 625, Mismatches: 69, Indels: 26
0.87 0.10 0.04
Matches are distributed among these distances:
767 11 0.02
768 165 0.26
770 3 0.00
771 13 0.02
772 418 0.67
773 15 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (768 bp):
GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGAGCTCAGCCGAC
CAGCAGGGTGAGATGCGTAAGCCAGGGATCGACCAGGTGCCCCTCTACGTGCTACCAATCCTGCA
GCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAA
AGAAACACGGGGGCGGGGGCCGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCATGGAT
AGATAGGGTGGGAGGTGGGCTTAGGCACATCTTAATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGAGTCGTTG
TATATTTTTCACGATTTTTAAAACCTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGAAAAGAG
TTTTGGCACCAAACTTGGTAAACATGATCATTATATATTTGTTGGCATGCACAAAAAAACTTAAC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTAACCCCATTTCAGACACTTT
AATGGCCACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATCGTCGGGCCAATTTCA
Found at i:18561545 original size:26 final size:26
Alignment explanation
Indices: 18561509--18561561 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18561499 CCTATCCGAT
18561509 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
18561535 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18561561 C
1 C
18561562 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18562447 original size:26 final size:26
Alignment explanation
Indices: 18562411--18562463 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18562401 CCAGTTTGAT
*
18562411 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18562437 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18562463 C
1 C
18562464 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18563123 original size:26 final size:26
Alignment explanation
Indices: 18563094--18563149 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18563084 CCAGTCCGAT
*
18563094 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18563120 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18563146 CTTA
1 CTTA
18563150 AGTTAACCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18563294 original size:683 final size:680
Alignment explanation
Indices: 18561971--18563332 Score: 1992
Period size: 683 Copynumber: 2.0 Consensus size: 680
18561961 TACAGTTCAG
* **
18561971 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCTTCAAACTTGGTACACGTGATCCTTGTAGTT
1 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGCCCCCAAACTTGGTACACGTGATCCTTGTAGTT
* * *
18562036 TTGTTGGTAGGCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGA
66 TTGTTCGCAGGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
18562101 AAAAGGAGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGC
131 AAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
18562166 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCTAATATAAGGGCTAAGTA
196 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGAGGGCCAATATAAGGGCCAAGTA
* * * * **
18562231 CCAGTACCCATCGCACATCATGTGCGCACTCCCCCCCGACCCCTTGATCGTCGGAACCCCAATGC
261 CCAGCACCCATCGCACATCATATGCACACGCCCCCCCGACCCCCCGATCGTCGGAACCCCAATGC
* * * *
18562296 TGCCGGTCAGGTTCACCGACGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAG
326 CGCCAGTCAGGTTCACCGACAATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATACGGCACCAG
** **
18562361 CACATGCCCGAGCCCAACATGTGCTGCCGTGACCCTCGGTCCAGTTTGATCTTAGACTGGGAATG
391 CACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATG
* * * **
18562426 AACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGC
456 AACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCAACAAAACGAGCGTGC
* ** * *
18562491 GGGCACTCGGCCGGCCAGAGAGGCGGGAAGCACAAGCTAGGGATCGATCGGGTTGCCCTCTGCGT
521 GGGCACTCGGCCGGCCAGAGAGGCGGGAAGCACAAGCGAGGGATCGATCGGGTCCCCCTCTACGC
*** *
18562556 GCTACCGATCATGCTGTTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCCTAT
586 GCTACCGATCATGCTGCCCCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCCT-T
*
18562621 GCCTAAGCCAAACGACGAAACGAGTGGGCGA
650 GCCTAAGCCAAACGACGAAACGAGCGGGCGA
** * * *
18562652 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTTCCCCCAAACTTGGTAGACGTGATCCTTGT-TTC
1 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGCCCCCAAACTTGGTACACGTGATCCTTGTAGT-
*
18562716 TTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
65 TTTGTTCGCAGGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
18562781 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATG
130 AAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
18562846 CTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGAGGGCCAATATAAGGGCCAAGT
* * *
18562911 ACCAGCACCCATCGCACATCATATGCACACAGCCCCCTCGGCCCCCCCGATCGTCGGAACCCGAA
260 ACCAGCACCCATCGCACATCATATGCACAC-GCCCCC-CCGACCCCCCGATCGTCGGAACCCCAA
*
18562976 TGCCGCCAGTCAGGTTCTCC-AGCAATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATACGGCA
323 TGCCGCCAGTCAGGTTCACCGA-CAATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATACGGCA
* *
18563040 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTTGG
387 CCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGG
* *
18563105 AATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCTTAAGTTAACCAACAAAACGAGC
452 AATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCAACAAAACGAGC
* * * * * * *
18563170 GTGCGGGCGCTCTGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTTGGGTCCCCCTC
517 GTGCGGGCACTCGGCCGGCCAGAGAGGCGGGAAGCACAAG-CGAGGGATCGATCGGGTCCCCCTC
* * *
18563234 TACGCGCTACCGATCCTGCTGCCCCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTC
581 TACGCGCTACCGATCATGCTGCCCCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTC
* * * *
18563299 CGTTGCCTAAGCCAATCGATGAAACTAGCGGGCG
646 CCTTGCCTAAGCCAAACGACGAAACGAGCGGGCG
18563333 GGCGGGCGGG
Statistics
Matches: 603, Mismatches: 73, Indels: 9
0.88 0.11 0.01
Matches are distributed among these distances:
680 1 0.00
681 262 0.43
682 33 0.05
683 305 0.51
684 2 0.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.24
Consensus pattern (680 bp):
GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGCCCCCAAACTTGGTACACGTGATCCTTGTAGTT
TTGTTCGCAGGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGAGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATATGCACACGCCCCCCCGACCCCCCGATCGTCGGAACCCCAATGC
CGCCAGTCAGGTTCACCGACAATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATACGGCACCAG
CACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCAACAAAACGAGCGTGC
GGGCACTCGGCCGGCCAGAGAGGCGGGAAGCACAAGCGAGGGATCGATCGGGTCCCCCTCTACGC
GCTACCGATCATGCTGCCCCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCCTTG
CCTAAGCCAAACGACGAAACGAGCGGGCGA
Found at i:18563910 original size:11 final size:11
Alignment explanation
Indices: 18563894--18563926 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
18563884 CGGTCAGGTT
*
18563894 CTCCGATGATG
1 CTCCGACGATG
18563905 CTCCGACGATG
1 CTCCGACGATG
18563916 CTCCGACGATG
1 CTCCGACGATG
18563927 GTCCCCCGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:18564930 original size:26 final size:26
Alignment explanation
Indices: 18564894--18564947 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
18564884 GATCCAATCT
18564894 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
* *
18564920 TAGACTGGGAATGAGCTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
18564946 TA
1 TA
18564948 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:18565676 original size:876 final size:877
Alignment explanation
Indices: 18562652--18568036 Score: 6153
Period size: 876 Copynumber: 6.1 Consensus size: 877
18562642 GAGTGGGCGA
* * **
18562652 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTTCCCCCAAACTTGGTAGACGTGATCCTTGT-TTC
1 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-
*
18562716 TTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
65 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
18562781 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
18562846 CTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
18562911 ACCAGCACCCATCGCACATCATATGCACACAGCCCCCTCGGCCCCCCCGATCGTCGGAACCCGAA
260 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCCGGAACCCCAA
* * * ** *
18562976 TGCCGCCAGTCAGGTTCTCCAG-CAATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATACGGCA
323 TGTCGCCGGTCAGGTTCTCCAGACGATGCT----CGA-----CCCTGATGAAGAAAAATGCGGCA
* * * *
18563040 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CAGTCCGATCTTAGACTTG
379 CCAGCACATGCCCGAGCCCAGCATGTGCCGTCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGG
* * * * *
18563104 GAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCTTAAGTTAACCAACAAAACGAG
443 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *** *
18563169 CGTGCGGGCGCTCTGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTTGGGTCCCCCTC
508 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGT-CCCCTC
*
18563234 TACGCGCTACCGATCCTGCTGCCCCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTC
572 TA--CG-T---G---CTG-T-----AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * *
18563299 CGT-TGCCTAAGCCAATCGATGAAACT-AGCGGGCGGGCGGGCG-G-GCACTACGTCGGACAGAG
622 CGTATGCCTAAGCCAACCGACGAAA-TGAACGGGCGGGCGGGCGCGAGCACTACGTCGGCCAGAG
* * * *
18563360 AGGCGGGATGCGCAAGCCCTGGACCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTC
686 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
18563425 TGTGTGCCAATTCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
751 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * *
18563490 GTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGA
816 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* * *
18563552 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--T
* * *
18563617 TTTTTTTGGCATGCACAAAAAAATTGAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTT
64 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
18563682 GAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGAAAACCTGTAAAATCTCAAAT
129 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
18563747 GCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
18563812 TACCAGCACCCATCGCACATCATGTGCGCACACCACCTCTGGCCCCCCCGATCGCCAGAACCCCA
259 TACCAGCACCCATCGCACATCATGTGCGCACACC-CC-CCGGCCCCCCCGATCGCCGGAACCCCA
* ** *
18563877 ATG-CTACCGGTCAGGTTCTCCGATGATGCTCCGACGATGCTCCGACGATGGTCCCCCGGCAAAG
322 ATGTC-GCCGGTCAGGTTCTCC----A------GACGATGCT-CGACCCTGAT------G--AAG
* * * * *
18563941 AAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTG-C-TACTGCAACCTTCGGTCTAATTC
367 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCGT-C-GCAACCCTCGGTCTGATCC
* * * *
18564004 GATTTTAGACTGGGAACGAACTCCGTATGCTTAAACTGGGAACGAACTCCGTATGCCTAAGTCAA
430 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
18564069 CCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGA
495 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * **
18564134 CCGAGTCCCCCACTACGTACTGCCAATCCTACTGCTGCAACCCTTGGTCCAGTCGAATCTTAGAC
560 CCGAGT-CCCCTCTACGTGCTG-TAA-CC--CT-C-G---GTC-TGGT-C--T-G-ATCTTAGAC
*
18564199 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGCGGGCGGGCG-G-GCACTA
609 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGCGGGCGGGCGCGAGCACTA
* * * *
18564258 CGCCAGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACA
674 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
18564323 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGCAAATTCATACAATGGTCCCTTAAG
739 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
18564388 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTT
804 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTT
* **
18564453 GCAGTTTAG
869 GCGGTTCGG
* * ** * *
18564462 GATTTTTCAAAATTTTTT-TAGAAGGAGTTTTGGAACCAAACTTGGTAGACGTGATCCCTCTATT
1 GATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
18564526 TTT-TTGGTATTGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTT
65 TTTGTTGGCA-TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
18564590 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAAT
129 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
18564655 GCTCTTTAATGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCACA-ATAATGGCCAA
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA-ATATAAGGGCCAA
* * * * *
18564719 GTACCAGCACCCATCGCAAATCATGTCCGCACACCCCCCCGACCCCCTCGATCGCCGAAACCCCA
258 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* * * * *
18564784 ATGTCGTCGATCAGGTTCTCCAG-TGATGCT-GACCC-GATGAAGAAAAATGCGGCACCAGTAAA
322 ATGTCGCCGGTCAGGTTCTCCAGACGATGCTCGACCCTGATGAAGAAAAATGCGGCACCAGCACA
* * * *
18564846 TGTCCGAGCCCAGCATGTGCCGTCGTAATCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACT
387 TGCCCGAGCCCAGCATGTGCCGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT
* * * * *
18564911 CCGTATGCCTAGACTGGGAATGAGCTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGT
452 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * *
18564976 GCTCAACCGGCCACAGGGGCGGGATGCGCAAGCCGGGGTTCGGCCGGGTCCCCTCTACGTGCTGT
517 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCTCTACGTGCTG-
* *
18565041 TGA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAACCGACGAA
581 TAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * ** *
18565105 ATGAACGGGCGGGTGGGTGCGCGAGCACCACGTCAACTAGAGAGACGGGATGC-CAAGCCGTGGA
646 ATGAACGGGCGGG-CGG-GCGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
18565169 TCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCTTTTTTATG
709 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* *
18565234 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTT
774 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
** *
18565299 TTCTATTTTTCATTATTTTTGAAACTTTTTACGGTTCGG
839 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* *
18565338 GATTTTTTTAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * * * *
18565403 TTGTTGGCTTGCACAACATAATTCAGCTAAAAACTTGAAGTGTAAAAGATTTTGTGACCATTTCA
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
18565468 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCCGCAAACCTGTAAAATCTCAAATGC
131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
18565533 -CTTTTAAGGGGGTGTGAGGTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
196 TC-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
18565597 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGGCCCCCCAGTTCGCCGGAACCCTAAT
260 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGCCGGAACCCCAAT
* * * * *
18565662 GTGGCCGGTCAGGTTCTTCAG-CGATGCTCTGGCGATGGTGCCTCGGTGAAGAAAAATGCGACAC
324 GTCGCCGGTCAGGTTCTCCAGACGATG--CT--CGA----CCCT-GATGAAGAAAAATGCGGCAC
* * * * * ** * *
18565726 CAAG-ACTTGCCTGAGCCTAGCATGTGCTGTCGCAACCCTCGATCCAATCCAATCTTAGATTGGG
380 C-AGCACATGCCCGAGCCCAGCATGTGCCGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGG
* * * *
18565790 AATGAAGTCCATATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
444 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* ** * * * * * *
18565855 GTGCGGGCGCTCA----GCC-GA---TC---ACCCTCTA--C-GTG-TTG-CC-AAT---C-CTG
509 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCTCTA
* * * * * * *
18565899 C-TGCCGCAACCCTCAGTCTGGTCTAATCTTACACTGGTAATGAACTCCGTTTGCCTAAGCCAAC
574 CGTGCTGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
18565963 CGATGAAACGAA----CGGGCGGGCG-G-GCACTATGCCAGCCAGAGAGATGGGATGCGCAAGCC
639 CGACGAAATGAACGGGCGGGCGGGCGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18566022 GTGGATCGATAGGGTGGTAGTTGGGTTTAGGCATATCTTCATATTTCTGCATAG-CAATGCCATT
704 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT-GCCAATGCCATT
* *
18566086 TTTATAGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
768 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
18566151 CTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGA
833 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* * *
18566196 GATTTTTTAAAATTTTTTCAGAAA-GAGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTCTACT
1 GATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
18566260 TTTGTTGGCATGCACAAAAACATTCAGCTAAAAA-TCGAAGTGTACAAGATTTTGTGACCATTTG
65 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * *
18566324 AAAAAAGTGTCCTCATTTTAGACACTTTCATGGCTACTGGCAGCAAACCTGTTAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
18566389 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* **
18566454 ACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGGGCCCCCCGATCGCTAGAACCCCAAT
260 ACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGCCGGAACCCCAAT
* * *
18566519 GTCGCCGGTCAGGTTCTGC-GACGATGGT-G-CCCTGATGAAGAAAAATACGGCACCAGCACATG
324 GTCGCCGGTCAGGTTCTCCAGACGATGCTCGACCCTGATGAAGAAAAATGCGGCACCAGCACATG
* * * *
18566581 CCCGAGCCCAGCATGTGCTG-CTGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTC
389 CCCGAGCCCAGCATGTGCCGTC-GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTC
** * * **
18566645 CGTATGCTTAGACTGGGAATGAACTTTGTATGCCTGAGTCAACCCACAAAACGAGCGTGCGGGAA
453 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * **
18566710 CTTAGCCGACCAGAGGGGTGAGATGCGCAAGCCGAGGATCGATCGAGTCCCGCTCTGTGTGCTAC
518 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCC-CTCTACGTGCT--
* ** *
18566775 CGTAACCCTTGGTCCAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGGAC
580 -GTAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
18566839 GAAATGAGCGGGCAGGC-GG-GCGAGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGG
643 GAAATGAACGGGCGGGCGGGCGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
18566902 ATCGATAGGGTGGTAGGTGGGGTTAGGCACATCTTCATATTTCTGTGTACCAATGCCATTTTTAT
708 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* *
18566967 GGCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG-AAGACGACTCGT
773 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* *
18567031 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTGG
838 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* * * * *
18567071 GGTTTTCTAAAATTTTTTCGGAAA-GAGTTTTGGCCCCAAACTTTGTAAACATGATCCTTGTATT
1 GATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
18567135 TTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
65 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
18567200 AAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
18567265 CTCTTTAAGGGGGTGAGAATTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
18567330 ACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGACCCCCCCGATTGCCGGAACCCCAATG
260 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * * * * * *
18567395 CCACCGGTCAGGTTCTCC-GGCAATGGT-G-CCCTGACGAAGAAAAATGTGGCACCAGCACATGC
325 TCGCCGGTCAGGTTCTCCAGACGATGCTCGACCCTGATGAAGAAAAATGCGGCACCAGCACATGC
* * *
18567457 CCAAGCCTAGCATGTG-C-TCCCTTAA-CC-C--TC-G----G-TC-----C---G-AT---CT-
390 CCGAGCCCAGCATGTGCCGTCGC--AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTC
* * *
18567497 -G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCCACCCATGAAATGAGCGTGCGGGCG
453 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
18567559 CTCAGCCAGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAATCGAGTCCCCTTCTGCATGCTGC
518 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCC-TCT--A------
* * ** * *
18567624 CGATCCTGCTACCGTAACGCTCGATCTGGTCCAATCATAGACTGGGAATGAACTCCGTATGCATA
574 CG----TGCT---GTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
18567689 AGCCAACTGATGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
632 AGCCAACCGACGAAATGAACGGGCGGGCGGGC--GCGAGCACTACGTCGGCCAGAGAGACGGGAT
*
18567754 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCA
695 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* *
18567819 ATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGG
760 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
18567884 CAAGACGACTCATTTTCCATTTTTCACGATTTTTGAAACTTTTTGCGATTCAG
825 CAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* * * * * * *
18567937 GA-TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCTCAAACCTAGTAGTCGTGATCATTGTATTT
1 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
18568001 TTGTTGGCATGCAAAAAAAAATTCAGTTAAAAACTC
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
18568037 AAATGCTCTT
Statistics
Matches: 3861, Mismatches: 482, Indels: 319
0.83 0.10 0.07
Matches are distributed among these distances:
845 3 0.00
846 132 0.03
847 3 0.00
848 1 0.00
849 96 0.02
850 4 0.00
851 3 0.00
852 1 0.00
853 2 0.00
855 1 0.00
856 3 0.00
857 253 0.07
858 253 0.07
859 9 0.00
860 4 0.00
861 78 0.02
862 3 0.00
863 2 0.00
864 4 0.00
865 300 0.08
866 51 0.01
867 2 0.00
868 3 0.00
869 46 0.01
870 3 0.00
871 7 0.00
872 58 0.02
873 14 0.00
874 11 0.00
875 243 0.06
876 799 0.21
877 29 0.01
878 3 0.00
879 2 0.00
880 2 0.00
881 2 0.00
882 2 0.00
883 3 0.00
884 14 0.00
885 172 0.04
886 2 0.00
887 140 0.04
888 2 0.00
893 2 0.00
894 3 0.00
896 6 0.00
897 1 0.00
899 2 0.00
900 58 0.02
901 3 0.00
902 255 0.07
903 5 0.00
904 5 0.00
905 4 0.00
906 1 0.00
907 44 0.01
908 211 0.05
909 4 0.00
910 258 0.07
911 4 0.00
912 4 0.00
913 209 0.05
914 17 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (877 bp):
GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGT
CGCCGGTCAGGTTCTCCAGACGATGCTCGACCCTGATGAAGAAAAATGCGGCACCAGCACATGCC
CGAGCCCAGCATGTGCCGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCTCTACGTGCTGTAACC
CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAA
CGGGCGGGCGGGCGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
TTTCACGATTTTTGAAACTTTTTGCGGTTCGG
Found at i:18565809 original size:26 final size:26
Alignment explanation
Indices: 18565780--18565830 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18565770 CAATCCAATC
* *
18565780 TTAGATTGGGAATGAAGTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
18565806 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
18565831 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:18568317 original size:26 final size:26
Alignment explanation
Indices: 18568288--18568340 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18568278 CTGGTCCGAT
18568288 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18568314 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18568340 C
1 C
18568341 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18569019 original size:26 final size:26
Alignment explanation
Indices: 18568990--18569071 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
18568980 CCGGTTCGAT
18568990 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18569016 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18569042 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18569068 CTTA
1 CTTA
18569072 AGTTAATCCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18569944 original size:26 final size:26
Alignment explanation
Indices: 18569915--18569965 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18569905 TGTCCGATTG
18569915 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
18569941 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
18569966 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:18570843 original size:26 final size:26
Alignment explanation
Indices: 18570807--18570857 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18570797 CGGTCTGATC
18570807 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
18570833 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
18570858 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:18573090 original size:897 final size:896
Alignment explanation
Indices: 18568591--18574412 Score: 7383
Period size: 898 Copynumber: 6.5 Consensus size: 896
18568581 ATCGATAGGG
* * * **
18568591 TGGTAGACGTGATCATTGT-TTTTTTGTTGGCATGTACAAAAAAATTTAGCTAAAAACTTGAAGT
1 TGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
* *
18568655 GTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC-TTATTAATGGCTACTGGC
65 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT-TTAATGGCTACTGGC
* *
18568719 AGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
129 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
18568784 AGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACGCCCCCCGG
194 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCC-G
* * * * * *
18568849 GCCCCCTGATCGTCGAAACCCCAATGCTG-TGGTCAAGTTCTCCGACGATGCTCCGATGATGGTG
256 GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* * * * * * *
18568913 CCCTGACGATGAAAAATGTGGCTCCAGCACATGCCCGAACCCAGCATGTGTTGCCGTAACCCTAG
321 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA--C---
*
18568978 GTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
381 --CC---TCG----T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTTCGTATGC
* * * * *
18569043 TTAGACTGGAAATGAACTCCGTATGCTTAAGTTAATCCATGAAACGAGCGTACGGGCGCTCAGCC
424 TTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * *
18569108 GGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCACTCTACATGCTGCCGTTCCT
488 GGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCT
** ** *** * *
18569173 GCTGTCGTAACCCTGGGTTCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAAC
553 GCTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
18569238 CGACGAAACGAGCGGGCGGGCGGGCGAGG-ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
618 CGACGAAACGAGCGGGCGGGCGGGCG-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
18569302 CT-GATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTT
682 -TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* *
18569366 TTATGGCTTGTAAACTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
746 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
18569431 TCGTTTTCTATTTTTCACGATTTTTGAAGCTTTTTACGGTTCGAGGATTTTTTACAATTTTTTCG
811 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GGATTTTTTAAAATTTTTTCA
18569496 GAAGGAGTTTTGGCCCCAAACT
875 GAAGGAGTTTTGGCCCCAAACT
* * * *
18569518 TGGTAGACATGATCCTTGTA-TTTTTTTGGCATGCATAAAAAAATTCAGCTGAAAACGCAAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
* *
18569582 TACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
18569647 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
18569711 GGGGCCAATCTAAGGGCCATGTACCAGTACCCA-CGCACATCA-GTTGCGCACACCCCCCGGCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-TGCGCACACCCCCCGG-CC
* **
18569774 CCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCC
259 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
** ** * *
18569839 TAACGAAGAAAAATATGACACCAGCACATGCCCCAGCCCAGCATGTGCTGCCGCAACCCTCTGTC
324 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GT-
*
18569904 CT-GTCCGAT-TGTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGAATGAACTCTGTATGC
387 CTGGTCCGATCT-TAGACTGGGAATGAACTTC-GTATGCTTAGACT-GGAATGAACTCCGTATGC
* * * *
18569966 CTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCT
449 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCC
* * * ** * **
18570031 AGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTTCTGTCGCAACCCTCAATCTAGTCTG
514 GGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCAATCCGGTCTG
*
18570096 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGACGGGGCGGGC
579 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA---G-C-GGGCGGGC
* * * *
18570161 GTGCGGGCACTACGTCGGCCAGAAAGACAGGATGCGTAAGCCGTGGATC-----------AGGTG
639 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
18570215 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
704 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
** ** * *
18570280 TCATCCCTTAAGCCTTCACGTGAAGTTTCAAAGCAAGATGACTCGTTTTCTATTTTTCATGATTT
769 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* *
18570345 TTGAAACTTTTTAAGGTTCGGGATTTTTTTAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACT
834 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACT
* * *
18570408 TGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCCAGCTAAAAACTCAAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
18570473 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
18570538 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
18570603 GGGGACAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
** ** * * **
18570668 CACGATCACCGGAACTTCAATGCCGCCGGTCAGGTTCTCGGGCGATGCTCCGACGATGGTGCCTT
261 C-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* *
18570733 GACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTCCTGCCGCAACCCTCAGT-T
325 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCT
* * * *
18570797 CGGTCTGATCTTAGACTGGGAATGAACTCCATATGGTTAGACTGGGAATGAACTCCGTATGCCTA
389 -GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTA
* * * *
18570862 AGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGC-AGGATGCGTAAGTCGG
452 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCCGG
** * * * ** ** *
18570926 GGATCGGTCGGGTCCCCCTTTCCGTGTTGTCGATCCTGCTACCACAA-CCTCGGTCTGGTCTGAT
516 GGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCAATCCGGTCTGAT
* ** * * * *
18570990 CTAAGACTGGGAATGAACTCTTTATGCTTAAGCCAACCAACGAAACGAGCGGACGGGTGGGCGGG
581 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
18571055 CACTACG-CAGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTA
646 CACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * **
18571119 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAAACGTCC
710 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
18571184 CTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCAAGATTTTTGAAA
775 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * *
18571249 CTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGTCCCAAACT
840 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
** * **
18571306 TGACAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
* * *
18571371 TACAAGATTTTGCGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGTAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
18571436 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
18571501 GAGGCCAATATAAGGGCCAAATACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGTCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCC
* ** * *
18571566 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCAGGCGATGGTGCCCC
260 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * *
18571631 GACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCACAA-CC-C-TC-G
325 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTG
*
18571692 GTCCGATC-----C---G-AT---C-T--TAGGC-T----TGGAATGAACTCCGTATGCCTAAGT
390 GTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGT
** * ** ** * *
18571737 CAACCCGTGAAACGAACGTGCGGGTACTCAATCGGCCAGATGGGCGAGATGCGCAAGTCGGGGAT
455 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGAT
* * *
18571802 CGACCGGGTCCCCCTCTACATGCTACCGATCCTGCTACCACAACCCTCAGTCCTGTCTGATCTTA
520 CGACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCAATCCGGTCTGATCTTA
18571867 GACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTAGGCGGGCGGGCGGGCGGG
585 GACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGCGGGCGGG
* * * *
18571932 CATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCTTGGATCAATAGTGTGGTAGGTGGGTTTAG
646 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
18571997 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCC
711 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18572062 TTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCGATTTTTCACGATTTTTGAAAC
776 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
18572127 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACA
841 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * *
18572183 TGGAAGACGTGATCCTTGTATTTTTTTTGG-AGTGCAAAAAAAAATTCAGCCAAAAACTCAAAGT
1 TGGTAGACGTGATCCTTGTATTTTTTTTGGCA-TGCACAAAAAAATTCAGCTAAAAACTCAAAGT
* *
18572247 GTACAAGATTTTGTGACCATTCGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCA
65 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
18572312 GCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATA
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
**
18572377 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCAACCT
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-
* *
18572441 CCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
259 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * *
18572506 CGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATGCTACCGTAACCCTCGATC
324 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-TC
* * *
18572571 TGGTCCGATCTTCGACTGGGAATGAACTTCGTATGCTTAGACTAGAATGAACTTCGTATGCCTAA
388 TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAA
** * * * *
18572636 GTTGACCCACGAAATGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGAGATGCGTAAGCCGGGA
453 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGG
* * * * *
18572701 ATCGACCGGGTCCCCCTCTGCGTGCTACTGATCCTACTGCCACAACCCTCAATCCAGTGC-GATC
518 ATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCAATCCGGT-CTGATC
* * ** ** * ** * *
18572765 TTAAATTGGGAATGAACTCGGTATGCCTAAGTGAACCGACGAAACGATCGGGCGGGTAGGAGGGT
582 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
** * *
18572830 ACTACACCGGCTAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGG
647 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** *
18572895 CACATCTTCATATTTCTATGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
712 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
18572960 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
777 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * * *
18573025 TTTTATGGTTCGGGATTTTTTTAAATTCTTTCAAAAGCAGTTTTGGCCCCAAACC
842 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * * *
18573080 TGGTAGACGTGATGCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTACAAA-TTAGAAGT
1 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA-AAGT
* *
18573143 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCGGACACTTTAATGGCTACTGGCA
65 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
18573208 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
18573273 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCC
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-C
* * * * *
18573338 CCCCCGATCG-CTGGAACCCCAATACCGCCAGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGC
258 CCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* * * * *
18573402 CCCAACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGTAACCCTCGG
322 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G
* * * **
18573467 TCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTTGTATGCC
386 TCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT-GGAATGAACTCCGTATGCC
** ** * * *
18573532 TAAGTCAACCCGTGAAACGAGCGTGCAAGTGCTCAACCGGCCAGAGGGGC-AGGATGCGTAAGCC
450 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCC
** ** * * ** * * * * * *
18573596 GATGATCGGTCGGGTCCCCCTCTATGAGCCGCCAATCTTGCCACTACAACCCTCGATCCGGTCGG
514 GGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCAATCCGGTCTG
* * * * *
18573661 GTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAATGAGCGGGCGGGCAGGCG
579 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGC--G--GGCG
* * * * *
18573726 GGCGGGCACTATGTCAGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGGAGGTGG
640 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
18573791 GTTTAGGCATATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
705 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
18573856 TGTCCCTTAAGCCTTCACGTAAATTTTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTT
770 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA--TT
** * * *
18573921 TTTGGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACT
833 TTT-GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * * *
18573986 TGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAATTCAGTTAAAAACTCAAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
18574051 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
** * *
18574116 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGATGTGTGAGTTCTCGAGGTTTGATAAGGGAAAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* ** *
18574181 GGGGCCAATATAAGGGCTAACCACCAGCACCCATCGCACATCATGTGCGCACACTCCCCCAAGCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCC-GGCC
** * * * * *
18574246 CCCCTGAAAGTC-AAGACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCTGACAATGGTGC
259 CCCC-GATCGTCGGA-ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* * *
18574310 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGGCCAGCATGTGCTGCCACAACCCTCGG
322 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G
* *
18574375 TCCGGTCCGATCTTAGACTAGGAATGAAC-TCTGTATGC
386 TCTGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGC
18574413 CTAAGCCAAC
Statistics
Matches: 4295, Mismatches: 498, Indels: 223
0.86 0.10 0.04
Matches are distributed among these distances:
872 113 0.03
873 57 0.01
875 3 0.00
876 113 0.03
877 471 0.11
878 5 0.00
880 2 0.00
881 10 0.00
884 2 0.00
885 1 0.00
886 2 0.00
887 48 0.01
888 2 0.00
889 3 0.00
890 59 0.01
891 310 0.07
892 89 0.02
893 285 0.07
894 5 0.00
895 2 0.00
896 203 0.05
897 474 0.11
898 685 0.16
899 173 0.04
900 1 0.00
901 170 0.04
902 50 0.01
903 171 0.04
905 5 0.00
906 86 0.02
907 207 0.05
908 142 0.03
909 1 0.00
910 1 0.00
913 2 0.00
914 1 0.00
916 2 0.00
921 3 0.00
922 32 0.01
923 83 0.02
924 16 0.00
925 29 0.01
926 153 0.04
927 23 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGG
TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATC
GACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCAATCCGGTCTGATCTTAG
ACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTA
CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
Found at i:18574911 original size:720 final size:720
Alignment explanation
Indices: 18573641--18575130 Score: 2267
Period size: 720 Copynumber: 2.1 Consensus size: 720
18573631 TCTTGCCACT
* * * * *
18573641 ACAACCCTCGATCCGGTCGGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAA
1 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAA
* * *
18573706 AATGAGCGGGCGGGCAGGCGGGCGGGCACTATGTCAGCCAGAGAGACGGGATACGCAAGCCATGG
66 AATGAGCGGGCGGGCAGGCGGGCGGACACTACGCCAGCCAGAGAGACGGGATACGCAAGCCATGG
*
18573771 ATCGATAGGGTGGGAGGTGGGTTTAGGCATATCATCATATTTCTGCATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGGAGGTGGGTTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTAT
* *
18573836 GGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTAAATTTTCATGGCAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGT
** *
18573901 TTTCTATCTTTCACGATTTTTTTGGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGA
261 TTTCTATCTTTCACGA-TTTTTTGGAAACTTTTTCCGGTTCGAGATCTTTTAAAATTTTTTCGGA
*
18573966 AGGAATTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAAT
325 AGGAATTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAAT
*
18574031 TCAGTTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
390 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
18574096 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGATGTGTGAGTTCT
455 ACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCT
* *
18574161 CGAGGTTTGATAAGGGAAAGGGGGCCAATATAAGGGCTAACCACCAGCACCCATCGCACATCATG
520 CGAGGTTTAATAAGGGAAAGGGGGCCAATATAACGGCTAACCACCAGCACCCATCGCACATCATG
* *
18574226 TGCGCACA-CTCCCCCAAGCCCCCCTGA-AAGTCA-AGACCCCAATGCCGTCGGTCAGGTTCTCC
585 TGCGCACAGC-CCCCC-AGCCCCCC-GATAA-TCAGA-ACCCCAATGCCGCCAGTCAGGTTCTCC
* *
18574288 GATGATGCTCTGACAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGGCCAG
645 GATGATGCTCTGACAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCCAG
*
18574353 CATGTGCTGCC
710 CATGTGCTACC
* *
18574364 ACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
1 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAA
* * * *
18574429 AATGAGCGGGCGGGCGGGCTGGG-GGACACTACGCC-GACCAGAGAGATGGGATGCGCAAGCCGT
66 AATGAGCGGGCGGGCAGGC-GGGCGGACACTACGCCAG-CCAGAGAGACGGGATACGCAAGCCAT
* *
18574492 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
129 GGATCGATAGGGTGGGAGGTGGGTTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTT
*
18574557 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
194 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTC
* * *
18574622 GTTTTCTATTTTTCACGA-TTTTT-GAAACTTTTTCCGGTTCGGGATCTTTTAAAATTTTTTTGG
259 GTTTTCTATCTTTCACGATTTTTTGGAAACTTTTTCCGGTTCGAGATCTTTTAAAATTTTTTCGG
*
18574685 AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAA
324 AAGGAATTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAA
* * **
18574750 TTTAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTTATTTCAGA
389 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18574815 CACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
454 CACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTC
* * * ** * *
18574880 TCG-GGATTTAATGAGGGATAGGGGGCCAATATAACTGCTAAGTACCAGTACCCATCGCATATCA
519 TCGAGG-TTTAATAAGGGAAAGGGGGCCAATATAACGGCTAACCACCAGCACCCATCGCACATCA
* * * *
18574944 TGTGCGCACAGCCCCCCAGCCCCCCGATCATCGGAACCCCAATGTCGCCAGTCAGGTTCTCCGGT
583 TGTGCGCACAGCCCCCCAGCCCCCCGATAATCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGAT
* * ** * * *
18575009 GATGCTCTGGCGATGGTGCCCCGGTGAAGAAATATGCGGCACCAGCACAAGCTCGAGCCCAGCAT
648 GATGCTCTGACAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCCAGCAT
*
18575074 GTGCTATC
713 GTGCTACC
* *
18575082 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
18575131 TTAGACTGGG
Statistics
Matches: 696, Mismatches: 65, Indels: 17
0.89 0.08 0.02
Matches are distributed among these distances:
718 138 0.20
719 12 0.02
720 287 0.41
721 6 0.01
722 1 0.00
723 249 0.36
724 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (720 bp):
ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAA
AATGAGCGGGCGGGCAGGCGGGCGGACACTACGCCAGCCAGAGAGACGGGATACGCAAGCCATGG
ATCGATAGGGTGGGAGGTGGGTTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGT
TTTCTATCTTTCACGATTTTTTGGAAACTTTTTCCGGTTCGAGATCTTTTAAAATTTTTTCGGAA
GGAATTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATT
CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTC
GAGGTTTAATAAGGGAAAGGGGGCCAATATAACGGCTAACCACCAGCACCCATCGCACATCATGT
GCGCACAGCCCCCCAGCCCCCCGATAATCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGATGAT
GCTCTGACAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCCAGCATGTG
CTACC
Found at i:18575133 original size:26 final size:26
Alignment explanation
Indices: 18575104--18575156 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18575094 CCGGTCTGAT
*
18575104 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18575130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18575156 C
1 C
18575157 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18576017 original size:26 final size:27
Alignment explanation
Indices: 18575977--18576034 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
18575967 CTGGTCTGAT
*
18575977 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGAAATGAACTCCGTATGC
18576003 CTTAGACTGGAAATGAACTCCGTATGC
1 CTTAGACTGGAAATGAACTCCGTATGC
18576030 CTTAG
1 CTTAG
18576035 TCAACCCACG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGAAATGAACTCCGTATGC
Found at i:18576213 original size:26 final size:26
Alignment explanation
Indices: 18576162--18576214 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18576152 CTGGTTCGAT
* * *
18576162 CTTAGACTGGGAATGATCTCTATATG
1 CTTAAACTGGGAATGAACTCCATATG
*
18576188 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
18576214 C
1 C
18576215 AGGCCAAGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:18577336 original size:26 final size:26
Alignment explanation
Indices: 18577296--18577348 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18577286 TTGGTCTGAT
* *
18577296 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
18577322 CTTAAACTGGAAATGAACTCCGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
18577348 C
1 C
18577349 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGAAATGAACTCCGTATG
Found at i:18579120 original size:26 final size:26
Alignment explanation
Indices: 18579069--18579121 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18579059 CTGGTTCGAT
* * *
18579069 CTTAGACTGAGAGTGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
*
18579095 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
18579121 C
1 C
18579122 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18580010 original size:26 final size:26
Alignment explanation
Indices: 18579974--18580024 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18579964 TGGTCCGATC
18579974 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
18580000 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
18580025 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:18580378 original size:904 final size:892
Alignment explanation
Indices: 18576216--18580884 Score: 5241
Period size: 905 Copynumber: 5.2 Consensus size: 892
18576206 TCCGTATGCA
* * * *
18576216 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACTCTCGCCCCGACCCCTCGATCGTCGGA
1 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACAC-C-CCCCGGCCCCCCGATCGTCGGA
* * ***** *
18576281 ACCCCAATGCCACCGGTAAGGTTCTCTTACAATGCTCCGACGATGGTGCCCCGATGAAGAAAAAT
64 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAAT
* * * * * ** * *
18576346 GCGGCACCAGCACATACCCGCGCCCAGCATTTACTGTCGTAACCCTCGGTCCGGTCCGATCTTCG
128 GCGACACCAGCACA-AGCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAG
* * * *
18576411 ACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCACGAA
192 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
18576476 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCAGCCGGGTCC
257 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCAGTCGGGTCC
* * * * * * * *
18576541 CCCTCTGCGTGCTACCGATCCTACTGGCACAACCCTCG-GTCTGGTC-CATTCTTAGACTGGGAA
322 CCCTTTGTGTGCTACCGATCTTGCTGCCGCAACCCTTGAGTC-GGTCTGA-TCTTAGACTGGGAA
* * * *
18576604 TGAACTCCGTATGCCTAAGCCAACTGA-CGAA--A----CGA-A-CGGGCGGGTGGGCACTACGT
385 TGAACTCCGTATGCCTAAGCCAACCGACCAAACGAGCGGCGAGAGCGGGCGGGCGGGCACTAAGT
* * *
18576660 CGGTCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCT
450 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA--G-GGT--GTCGG-TTAGGCACATCT
* * *
18576725 TCATATTTCAT-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCC
509 TCATATTT-TTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
18576789 TTCACGTGAAGTTTCATGGCGAGACGACTTGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTAC
573 TTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* * *
18576853 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGGTA-ACGTGATCCT
638 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGAGATCCT
* * * *
18576917 TGTATTTTTTTTGGCATGTACAAAAAACTTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAC
703 TGTA-TTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-TGAC
* * * * * *
18576982 AATTTGAAAAATGTGTTCCCATTTTAGACACTTTAGTAGCTACTGGCAGCAAACCTGTAAAATCT
766 -CTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * *
18577047 CACATGCTTTTTAAGG-GGGCATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
830 CAAATGCTCTTTAAGGTGGG-GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
18577110 GGCCAAGTACCAGCACCCATCGCACATCATCTGCGTACAACCCCCTGGCCCGCCCGATCG-C-CA
1 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAC-ACCCCCCGGCCC-CCCGATCGTCGGA
* * **
18577173 GCCCCAATGCCGCCGGTCAGGTTCTCCGGTCATGCTCCGACGATGGTGCCCCGGTGAAGAAAATA
64 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCG-CGATGGTGCCCCGACGAAGAAAA-A
* * * * *** * * *
18577238 T--GTCACCAGCACATGCCCAGCCCAGCATGTGTTGTTGTAACCCTCAGTTTGGTCTGATCTTAG
127 TGCGACACCAGCACAAGCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAG
* * * *
18577301 ACTGGGAATGAACTCCGTATGCTTAAACTGGAAATGAACTCCGTATGCCTAAGTCAAGCCATGAA
192 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * * *
18577366 ACGAGTGCGAGGGCGCTCAGCCGGCTAGAGGGGTGGGATGTGCAAGCCGGGGATC-GGCTGGGTC
257 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCAGTC-GGGTC
* ** * * * * * * **
18577430 CCCCTCTACGTGCTACTGATCCTGTTGCTGCAACCCTCG-GTCCGATCCAATCTTAGACTGGGAA
321 CCCCTTTGTGTGCTACCGATCTTGCTGCCGCAACCCTTGAGT-CGGTCTGATCTTAGACTGGGAA
* * *
18577494 TGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGG-GCAG-GCGGACGGGCGGGCACTACA
385 TGAACTCCGTATGCCTAAGCCAACCGACCAAACGAGCGGCG-AGAGCGGGCGGGCGGGCACTA-A
* **** * * *
18577557 -CCAATGAGAGAGACGGGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
448 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA--G-GGT--GTCGG-TTAGGCACAT
* * *
18577621 CTTCATATTTCTGCATGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
507 CTTCATATTTTTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* ** * *
18577686 CTTCACGTGAAGTTTCATGGCAAGACGACTCACTTTCTATTTTTCACGATTTTTGAAACTTTTTG
572 CTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* * * *
18577751 CAGTTCGGGA-TTTTTAAAATTTTTTCGGAAGGAGCTTTGGCCCCAAACTTGATAGACGTGATCC
637 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGAGATCC
* * * * * * * *
18577815 GTGTATTTTTTTTGGCATGCACAAAAAACTTAAGCT-AAAGCATTGAAGTGAACAAGTTTTTGTG
702 TTGTA-TTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTT-TG
* * *
18577879 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGAAAACCTGTAAAAT
764 ACC-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
18577944 CTCAAATGCTCTTTAAGG-GGTTGTCAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
828 CTCAAATGCTCTTTAAGGTGG-GGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
18578008 G
892 G
* *
18578009 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGACCCCCCGATCG-CTGGA
1 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCC-CCGGCCCCCCGATCGTC-GGA
* * * ** ** **
18578073 ACCCTAATGCCGTCGGTCAGGTTGTCCGACGATGCTTAGACGATGGTGCCCCGGTGAAGAAAAAT
64 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAAT
* * * * **
18578138 -CTGGCACTAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAA-CC-C--TC-GGTCCGA---T-
128 GC-GACACCAGCACAAGCC-GAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCCGATCTTA
* *
18578193 --CT--G-AT---CT---TA--C----ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGA
191 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
18578241 AACGAGCGTGCGGGCGCTCAGCCGGCCA-ATGAGGCGGGATGCGCAAGCCGGGGATCAGCCCGGT
256 AACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGGCGGGATGAGCAAGCCGGGGATCAGTCGGGT
* * * * *
18578305 -CCCCTTCTGCGTGTTGCCGATCTTGCT-CTCGCAACCCTTGATTCGGTCCGATCTTAGACTGGG
320 CCCCCTT-TGTGTGCTACCGATCTTGCTGC-CGCAACCCTTGAGTCGGTCTGATCTTAGACTGGG
* * *
18578368 AATGAACTCCGTATGCCTAAGCCAACCGA-CGAA--A----CGA-A-TGGGCGGGCGGGCACTAT
383 AATGAACTCCGTATGCCTAAGCCAACCGACCAAACGAGCGGCGAGAGCGGGCGGGCGGGCACTAA
*
18578424 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAAGTGGTAGGTCGGTTTAGGCACAT
448 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT--AG-GGT--GTCGG-TTAGGCACAT
*
18578489 CTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
507 CTTCATATTTTTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
** * * *
18578554 CTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACCTTTTG
572 CTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* * * *
18578619 CGGTTCGGGATTTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATC
637 CGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGAGATC
*
18578684 CTTGTATTATTTTTGGCTTGCATAAAAAAAATT-AGCTAAAAACTCGAAGTGTACAAGATTTTGT
701 CTTGTATT-TTTTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-T
** *
18578748 GACCATTTGAAAAAAGTGTCCCTGTTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAA
763 GACC-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
18578813 TCTCAAATGCTCTATAAGG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATCTA
827 TCTCAAATGCTCTTTAAGGTGGG-GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
18578877 AG
891 AG
** * * * * *
18578879 GGCCAAGTATAAGCACCCATCACTCATCATGTGCGCACACCTCCCCGGCCGCCCCGGTCATCGGA
1 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACC-CCCCGGCC-CCCCGATCGTCGGA
* *
18578944 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAAT
64 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAAT
* *
18579009 GCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTTCGATCTTAG
128 GCGACACCAGCACAAGCC-GAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAG
* * * *
18579074 ACTGAGAGTGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
192 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
18579139 ACGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCGAGATGAGCAAGCCGGGGATC-GATCGGGTC
257 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCAG-TCGGGTC
* ** * *
18579203 CCCCTTTGTGTGCTACCGATCCTGCTGCTACAACCC-TCAGTCTGGTGTGATCTTAGACTGGGAA
321 CCCCTTTGTGTGCTACCGATCTTGCTGCCGCAACCCTTGAGTC-GGTCTGATCTTAGACTGGGAA
* * * *
18579267 AGAACTCCGTATGCCTAACCCAACCGACGAAACGAGCGG-GCGAGCGGGCGGGCGGGCACTAAGT
385 TGAACTCCGTATGCCTAAGCCAACCGACCAAACGAGCGGCGAGAGCGGGCGGGCGGGCACTAAGT
* * * * *
18579331 CAGACATAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCT
450 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA--G-GGT--GTCGG-TTAGGCACATCT
*
18579396 TCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTTAAGCC
509 TCATATTTTTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCC
* *
18579461 TTCACGTGAAGTTTAATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
573 TTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* *
18579526 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGCGATCCT
638 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGAGATCCT
* * **
18579591 TGAATTTTTATTGGCATGCACAAAAAGCTTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGAC
703 TGTATTTTT-TTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-TGAC
18579656 CGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
766 C-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
18579721 CAAATGCTCTTTAAGGTGGGGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
830 CAAATGCTCTTTAAGGTGGGGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
18579784 GGCCAAGTACCAGCACCCATTGCACATCATGTGCGTACAGCCCCCCGGCCCACCTATCGCCAGAA
1 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-CCCCCCGGCCCCCCGATCGTCGGAA
* *
18579849 CCCCAATGCCGCCGGTTAGGTTCTCCGGTGATGCTCCGCCGATGGTGCCCCGACGAACAAAAATG
65 CCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATG
* * *
18579914 CGGCACCAACACAAGCGCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGA
129 CGACACCAGCACAAGC-CGAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAGA
* *
18579979 CTGGGAATGAACTCCATATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
193 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * *
18580044 CGAGCGTGCGGGCGCTGAGCCAGCCAGAGGGGAGGGATGAGCAAGCCGGGGATCAGTCGGGTCCC
258 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCAGTCGGGTCCC
* * * *
18580109 CCTTTGTGTGCTACCAATCTTGCTGCCGCAACCCTTGA-TCCGTTTTATTCTTAGACTGGGAATG
323 CCTTTGTGTGCTACCGATCTTGCTGCCGCAACCCTTGAGTCGGTCTGA-TCTTAGACTGGGAATG
18580173 AACTCCGTATGCCTAAGCCAACCGACCAAACGAGCGGCTGAGAGGGCGGGCGGGCGGGTGGGTGG
387 AACTCCGTATGCCTAAGCCAACCGACCAAACGAGCGGC-GAGA--GCGGGCGGGC--------GG
* * * *
18580238 GCATTACGTCGGCCAGAGAGATGGGATGCGCAAG-CGTGGATTGATA-GGT-T-GG-TAGGCACA
441 GCACTAAGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGTCGGTTAGGCACA
*
18580298 TCTTCATATTTTTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAG
506 TCTTCATATTTTTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
18580363 CCTTCACGTGAAGTTTTATGGCAAGACGACTTGTTTTCTATTTTTCAAGATTTTTGAAACTTTTT
571 CCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * *
18580428 TCGGTTCAGGATTTTTTAAAAATTTTTCGGAA-GAGTTTTGGCCCCAAACTTGGTAGACGAGATC
636 ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGAGATC
*
18580492 CTTGTATTTTCGTTGGCATGCATAAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAAG-----T-
701 CTTGTATTTT-TTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTG
* * *
18580550 ---TTT--------TGTCCCCATTTCAGACACTTTAATAGCTACTAGCAGCAAACCTATAAAATC
764 ACCTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* ***
18580604 TCAAATGCTTTTTAAGGTTTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
829 TCAAATGCTCTTTAAGGTGGGGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
18580668 GGCCAAGTACCAGAACCCATCGCACATCATGTGCGTACACGCCCCCGGCCCCCCCGACCGTCGGA
1 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACAC-CCCCCGG-CCCCCCGATCGTCGGA
* * * * *
18580733 ACCCCAATGCCACCAGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCTGGCGAAGAAAAAT
64 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAAT
* * * * *
18580798 ACGACAACAGCACAAGCCCGAGCCCAACATGTGCT-ACAACAACCCTCAGTCTGGTCCGATCTTA
128 GCGACACCAGCACAAG-CCGAGCCCAGCATGTGCTGTC-ACAACCCTCGGTCTGGTCCGATCTTA
*
18580862 AACTGGGAATGAACTCCGTATGC
191 GACTGGGAATGAACTCCGTATGC
18580885 CTAAGCCAAC
Statistics
Matches: 3273, Mismatches: 381, Indels: 251
0.84 0.10 0.06
Matches are distributed among these distances:
868 200 0.06
869 3 0.00
870 249 0.08
871 113 0.03
872 5 0.00
873 2 0.00
875 11 0.00
876 160 0.05
877 3 0.00
879 1 0.00
880 1 0.00
882 4 0.00
883 1 0.00
884 153 0.05
885 142 0.04
886 2 0.00
888 4 0.00
889 3 0.00
890 223 0.07
891 19 0.01
892 58 0.02
893 12 0.00
894 45 0.01
895 1 0.00
896 6 0.00
897 163 0.05
898 246 0.08
899 243 0.07
900 57 0.02
901 16 0.00
902 19 0.01
903 82 0.03
904 437 0.13
905 448 0.14
906 85 0.03
907 2 0.00
908 11 0.00
911 3 0.00
915 10 0.00
916 30 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCGATCGTCGGAAC
CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCG
ACACCAGCACAAGCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCAGTCGGGTCCCCCT
TTGTGTGCTACCGATCTTGCTGCCGCAACCCTTGAGTCGGTCTGATCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACCAAACGAGCGGCGAGAGCGGGCGGGCGGGCACTAAGTCGGCCA
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGTCGGTTAGGCACATCTTCATATTTTTGC
TTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTT
TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTTTGG
CATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTGACCTTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
TGGGGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
Found at i:18580440 original size:26 final size:26
Alignment explanation
Indices: 18580406--18580457 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18580396 TTTTCTATTT
**
18580406 TTCAAGATTTTTGAAACTTTTTTCGG
1 TTCAAGATTTTTGAAAAATTTTTCGG
* *
18580432 TTCAGGATTTTTTAAAAATTTTTCGG
1 TTCAAGATTTTTGAAAAATTTTTCGG
18580458 AAGAGTTTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (26 bp):
TTCAAGATTTTTGAAAAATTTTTCGG
Found at i:18581491 original size:11 final size:11
Alignment explanation
Indices: 18581475--18581507 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
18581465 CGGTCAGGTT
18581475 CTCCGACGATG
1 CTCCGACGATG
18581486 CTCCGACGATG
1 CTCCGACGATG
18581497 CTCCGACGATG
1 CTCCGACGATG
18581508 GTGCCCCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:18582882 original size:19 final size:19
Alignment explanation
Indices: 18582858--18582901 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
18582848 GATTTTGTGA
18582858 CCATTTGAAAAAAGTGTCC
1 CCATTTGAAAAAAGTGTCC
18582877 CCATTTGAAAAAAGTGTCC
1 CCATTTGAAAAAAGTGTCC
18582896 CCATTT
1 CCATTT
18582902 CAGACACTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.30
Consensus pattern (19 bp):
CCATTTGAAAAAAGTGTCC
Found at i:18583492 original size:722 final size:711
Alignment explanation
Indices: 18581724--18584662 Score: 3687
Period size: 730 Copynumber: 4.1 Consensus size: 711
18581714 ATCTTGCTCA
* * * *
18581724 GCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCGTAAGCCAACCGACGA
1 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *** * *
18581789 AACGAGCAAGCGGGCGGACGGGCGGGCACTCCACCAACCAAAGAGACGGGATGCGCAAGCCGTGG
66 AAC--G-AA------GG-CGGGCAGGCACTACTCTGGCCAGAGAGACGGGATCCGCAAGCCGTGG
* * * * * * *
18581854 ATCGATATGGTAGTAGATGGGTGTAGGCACATCTTCCTATTTCTGCGTGCCAATGCCATTTTTAT
121 ATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
18581919 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGT
186 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * ** * * * *
18581984 TTTCTATTTTCCATAATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTCCAGAAGG
251 TTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
* * * *
18582049 AGTTTTGGCCCCAAAAC-TGATAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTT
316 AGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATC
* *
18582113 AGCTAAAAACT-GAAAGTGTACAAGATTTTGTGACC--A--TTTGAAAAAAGTGTCCCCATTTCA
380 AACTAAAAACTCG-AAGTGTACAAGATTTTGTGACCTGACCATTGAAAAAAGTGTCCCCATTTCA
* *
18582173 GACACTTTAATGGCAACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
444 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
18582238 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACTTC
509 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATC
* * * * * * *
18582303 ATGTTCGCACCCCCCCGGCTCCCCCGATCGTCGAAACCCCAATTCCGTCGGTCAGGTTCTCTTGT
574 ATGTGCGCACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCTGGC
* * *
18582368 GATGCTCCTACGATGGTGTCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAACCCAGCAT
639 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAACCCAGCAT
*
18582433 GTGCTACC
704 GTGCTGCC
* * * * *
18582441 GCAACCCTCGGTCTGGTCCGATGTTGGACTGGGAATGAACTCCGTATGCCTCAGCAAACCGACGA
1 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
18582506 AACGAACGGGCGGGCGGGCGGGCACTACTCTGACCAGAGAGACGGGATCCGCAAGCCATGGATCG
66 AACGAA------GGCGGGCAGGCACTACTCTGGCCAGAGAGACGGGATCCGCAAGCCGTGGATCG
*
18582571 ATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCT
125 ATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
*
18582636 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
190 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
18582701 TATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTGTTTT-GGAAGGAAT
255 TATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATT-TTTTCGGAAGGAGT
* *
18582765 TTTGGCCCTAAACTTGGTAGACGTGATCCTT-TATTTTTGTTGGCAAGCACAAAAAAAATCAACT
319 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAACT
18582829 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAAAAAAGTGT
384 AAAAACTCGAAGTGTACAAGATTTTGTGACC---TG-----A------CCA-TTGAAAAAAGTGT
*
18582894 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAA-G
434 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
18582958 GGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCC
499 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCC
** * *
18583023 ATCGCACATCATGTGCGCACCCCCCCGGCCCCCCCGATCACCGGAACGCCAATGCCGTCGACCAG
564 ATCGCACATCATGTGCGCACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAG
* * * *
18583088 GTTCTCTGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTG
629 GTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCG
** * *
18583153 AGTCCAGCATCTACTGCC
694 AACCCAGCATGTGCTGCC
* * *
18583171 ACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
18583236 AATG-A-GCGGGCAGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
66 AACGAAGGCGGGCAGGCACTACTCTGGCCAGAGAGACGGGATCCGCAAGCCGTGGATCGATAGGG
* * * *
18583299 TGGTTGGTGGGTTTAGGAACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTTTAAA
131 TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
18583364 TTCATACAATAG-CTCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
196 TTCATACAATGGTC-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
** * *
18583428 TTCACAATTTTTGAAACTCTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
260 TTCACAATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * *
18583493 CCCAAACTTGGTAGACGTGAACCTTGTATTTTTTTTGGCATGCATAAAACAAATCAACTAAAAAC
325 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAACTAAAAAC
* * * *
18583558 TCAAATTGTACAAGATTTTGTGACC--A--TTTGAAAAAAGTGTCCGCATTTCAGACACTTTAAT
390 TCGAAGTGTACAAGATTTTGTGACCTGACCATTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* **
18583619 GGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTTAGGGTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTT
* * *
18583684 TGATGAGGGATAGGCGGGCCAATATAAGGGCCAGAGCACCGGCACCCATCGCACTTCATGTGGGC
519 TGATGAGGGATAGG-GGGCCAATATAAGGGCCA-AGCACCAGCACCCATCGCACATCATGTGCGC
* * * * *
18583749 ACCCCCCTGGCTCCCGCCGATTCGTCGGAATCCCCAATCTCCGATCGGTCAGGTTCTCTCGGTGA
582 ACCCCCCCGGC-CCCCCCGA-TCGTCGGAA-CCCCAAT-GCCG-TCGATCAGGTTCTCT-GGCGA
* * *
18583814 TGCTCCTGGCGATGGTGTCCCGGCGAAAGAAAAATACGACACCAGCACATGCCCGAACCCAGCAT
641 TGCTCC-GACGATGGTGCCCCGGCG-AAGAAAAATACGGCACCAGCACATGCCCGAACCCAGCAT
18583879 GTGCTGTCC
704 GTGCTG-CC
* **
18583888 GCAACCCTCGGTCCTGGTCCGATGTGGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 GCAACCCTCGGTCC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
18583953 AAACGATACGGCGGGCGAGTCGGGCGAGCAGTACTCTGGCCAGAG-GAC-GGATCCGCATAAGCC
65 AAACGA-A-GGCGGGC-A----GGC-A-C--TACTCTGGCCAGAGAGACGGGATCCGC--AAGCC
* * *
18584016 GTGGATTCGATTTAGGGTGGTGGGTGGGTTTAGGTACATTTTCCCTTATTGTCTGCATGCCAATG
117 GTGGA-TCGA--TAGGGTGGTAGGTGGGTTTAGGTACATCTT--CATATT-TCTGCATGCCAATG
* *
18584081 CCAATGTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAAGCCTTCACGTGAAGTTTCATGGC
176 CC-ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGC
** * *
18584146 AAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGATTC-GAGATTTTTTTAAA
239 AAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAG-GATTTTTTAAAA
* * * *
18584210 TTTTTTTGGAAGGTGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGC
303 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
18584275 ACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGGTTTTGTGACC--A--ATTGAAAAAAGTG
368 ACAAAAAAAATCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCTGACCATTGAAAAAAGTG
18584336 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-
433 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
18584400 GGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
498 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACC
* * * * **
18584465 CATCGCACATCATGTGCACCCACCCCCCGGCCCGCCTGATCGTCGGAACCCCAATGCCACCGATC
563 CATCGCACATCATGTGCGCAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATC
** * * **
18584530 AGGTTCTCTGGCGATGCTCCGGTGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCC
627 AGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCC
*
18584595 CGAGCCCAGCATGTGCTGCC
692 CGAACCCAGCATGTGCTGCC
* * *
18584615 GCAACCCTCGGTCTGGTCTGATCTTAGACT-GCAATGAACTCCGTATGC
1 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18584663 TTAGACTGGG
Statistics
Matches: 1941, Mismatches: 216, Indels: 122
0.85 0.09 0.05
Matches are distributed among these distances:
704 75 0.04
705 15 0.01
706 17 0.01
707 18 0.01
708 36 0.02
709 7 0.00
710 7 0.00
711 6 0.00
712 65 0.03
713 253 0.13
714 18 0.01
715 16 0.01
716 38 0.02
717 76 0.04
718 49 0.03
720 1 0.00
721 5 0.00
722 256 0.13
723 59 0.03
725 17 0.01
726 12 0.01
727 18 0.01
728 42 0.02
729 23 0.01
730 259 0.13
731 109 0.06
732 6 0.00
733 7 0.00
734 36 0.02
735 32 0.02
736 31 0.02
737 32 0.02
738 45 0.02
739 255 0.13
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (711 bp):
GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAAGGCGGGCAGGCACTACTCTGGCCAGAGAGACGGGATCCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCACAATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAACTAAAAACT
CGAAGTGTACAAGATTTTGTGACCTGACCATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACCC
CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCTGGCGATGCTCCGACG
ATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCC
Found at i:18584681 original size:26 final size:25
Alignment explanation
Indices: 18584637--18584688 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
18584627 CTGGTCTGAT
18584637 CTTAGACTGCAATGAACTCCGTATG
1 CTTAGACTGCAATGAACTCCGTATG
*
18584662 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACT-GCAATGAACTCCGTATG
18584688 C
1 C
18584689 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGCAATGAACTCCGTATG
Found at i:18585745 original size:25 final size:26
Alignment explanation
Indices: 18585717--18585768 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18585707 CGGGTCCGAT
18585717 CTTAGACT-GCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* *
18585742 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
18585768 C
1 C
18585769 CTAATCAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:18586833 original size:26 final size:26
Alignment explanation
Indices: 18586797--18586849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18586787 CTGGTCTGAT
* *
18586797 CTTAGTCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18586823 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18586849 C
1 C
18586850 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18588456 original size:26 final size:26
Alignment explanation
Indices: 18588405--18588457 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18588395 TCGGTCCGAT
* **
18588405 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18588431 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18588457 C
1 C
18588458 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18591246 original size:719 final size:715
Alignment explanation
Indices: 18588568--18591458 Score: 3780
Period size: 703 Copynumber: 4.1 Consensus size: 715
18588558 TCTTGCTATG
* * * * * * *
18588568 GCAACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTTCGTATGCGTAAGCCAACCGGTGA
1 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAA
* * * * * *
18588633 AATGAGCGGGTG---GGCTGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCA-CAAGTCGTGG
66 AACGAACGGGTGACAGGC-GGCAGGCACTACGCCGGCCAAAGAGACGGGATG-AGCAAGCCGTGG
* *
18588694 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCGTGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
18588759 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCCCATGAAGTTTCATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCGT
* *
18588824 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAGGG
259 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
* * *
18588889 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAACAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCA
18588954 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
18589019 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTTGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
18589084 GGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
18589149 GCACACCCCCCCGGCGCCCC-CGATCGTTGG-ACCCCAATACCGTCGGTCAGGTTCT-C--C---
584 GCACACCCCCCCGGC-CCCCTCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGACGAT
* * * *
18589206 G---G-CGATGGTGCCCCGGCAAAGAAAAAAGTGGCCCCAGCACATG-CTCGAGCCCAGCATGTG
648 GCTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTG
18589266 CTGCC
712 CTG-C
* ** * * *
18589271 GCAACCCTCTGTCCAGTCCGATCTTAGACTGGAAATGAACTTCGTA-GCCTAAGCCAACCGACGA
1 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-TA
* * * * *
18589335 AAA-GAGCGGGTG---GGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
65 AAACGAACGGGTGACAGGC-GGCAGGCACTACGCCGGCCAAAGAGACGGGATGAGCAAGCCGTGG
* * * * **
18589396 ATCGATAGGGTGGTAGGTGGGTTTAGGCATATCATCATATTT-TGCATACCAGTAACATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* ** * * * *
18589460 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATAGCAAGATGACACGC
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCGT
* * * * *
18589525 GTTCTAATTTTCATGATTTTTAAAAC-TTTT-CGTAGTTCAAGATTTTTTAAAATTTTTTCAGGA
259 TTTCTATTTTTCACGATTTTCAAAACTTTTTACG--GTTCAGGATTTTTTAAAATTTTTTC-GGA
** * *
18589588 A-GAGTTTTGGAATCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCATGCACAAAAAAA
321 AGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAA
* *
18589652 TTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGA
385 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
18589717 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
450 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
18589782 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCCCATCAT
515 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
18589847 GTGCGCACACCCCCCC-GACCCCTCTGATTGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGA
580 GTGCGCACACCCCCCCGGCCCCCTC-GATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGA
** * * *
18589911 CGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGTA
644 CGATGCT-CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCA
18589976 TGTGCTGTC
708 TGTGCTG-C
* ** * * *
18589985 GCAACCCTCGATCTACTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGACAA
1 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAA
** * * * *
18590050 AAC-AA--GCCGACGGGCGGGAGGGCACTACG-CGGCCAAAGAGACGGGATGCGCAAGCTGTGGA
66 AACGAACGGGTGACAGGCGGCA-GGCACTACGCCGGCCAAAGAGACGGGATGAGCAAGCCGTGGA
*
18590111 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTGCATGCCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * *
18590176 GCGTGTAAATTCATGCAATGGTCCCTTAAGCCTTCTCATGAAGTTGCATGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCGTT
** * *
18590241 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGA-TTTTTAAAATTTTTTTGGACGGA
260 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGA
* *
18590305 GTTTTGGCCCCAAACTTGGTAGACGTGAT--TTC--------TTGGCAGGCACAAAAAAAATCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAG
** * *
18590360 CTAAAAACTTGAAGTGTACAAGATTTTGCGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTT
390 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
18590425 TAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAAGGGGTGTGAGTTCTCGAG
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
** * * *
18590490 GTTTGATTTGGGATAGGGGGCCAATATAAGAGCCAAGTACTAGCACCCATCACACATCATGTGCG
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
18590555 CACACCCCCCCGGCCCCCTCGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGC
585 CACACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGC
* * *
18590620 TTCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGAACATG-CTCGAGCCCAGCATGTGC
650 -TCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGC
18590684 TGC
713 TGC
* * *
18590687 AGCAACCTTCGGTCTGGTCCGATCTTAGACTGGTAATGAACTCCGTGTGCCTAAGCCAACCGATA
1 -GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATA
* * *
18590752 AAACGAATGGGTAGACAGGCGAGCAGGCACTATGCCGGCCAAAGAGACGCGATGAGCAAGCCGTG
65 AAACGAACGGGT-GACAGGCG-GCAGGCACTACGCCGGCCAAAGAGACGGGATGAGCAAGCCGTG
* * *
18590817 GATCGATAGGGTGGTTGGTGGGATTAGGCACATCTTCATATTTCTGCATGGCAATGCCATTTTTA
128 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * * * *
18590882 TGGGTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGATGACTCA
193 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCG
* * * ** * *
18590947 TTTTTTATTTTTCACGATTTTTAAAACTTTTTATGGTTTGGGATGTTTTAAAATTTTTTCGAAAG
258 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAG
* * *
18591012 AATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTTTTGGCATGCACAAAAAAATTC
323 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
18591077 AACTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAGAC
388 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
18591142 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
18591207 AGGTGTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * ** * **
18591272 TGCACACCCCCCCGCCGACCCCCCCGATCACCGGAACCCCAACACCGCCGGTCAGGTTCTCCGGT
583 CGCACACCCCCCCG--G-CCCCCTCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGAC
* * * * *
18591337 GATGCTCTGATGATGGTGCCCTGGCGATGAAAAATGCAGCCCCAGCACATGCCTGAGCCCAGCAT
645 GATGCTC-GACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAT
18591402 GTGCTGC
709 GTGCTGC
* * *
18591409 TGCAACCCTCGGTCTGGGCCGATCTTAAACTGGGAATGAACTCCATATGC
1 -GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18591459 TTAAACTGGG
Statistics
Matches: 1908, Mismatches: 223, Indels: 95
0.86 0.10 0.04
Matches are distributed among these distances:
699 2 0.00
700 8 0.00
701 131 0.07
702 369 0.19
703 429 0.22
704 11 0.01
706 2 0.00
707 15 0.01
708 187 0.10
709 47 0.02
711 5 0.00
712 2 0.00
713 24 0.01
714 189 0.10
715 128 0.07
716 4 0.00
717 2 0.00
719 210 0.11
721 3 0.00
722 138 0.07
723 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (715 bp):
GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAA
AACGAACGGGTGACAGGCGGCAGGCACTACGCCGGCCAAAGAGACGGGATGAGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTGCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGCT
CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGC
Found at i:18591468 original size:26 final size:26
Alignment explanation
Indices: 18591432--18591484 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18591422 CTGGGCCGAT
18591432 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
*
18591458 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
18591484 C
1 C
18591485 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:18592373 original size:26 final size:26
Alignment explanation
Indices: 18592334--18592386 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18592324 CTGGTCTGAT
*
18592334 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
*
18592360 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
18592386 C
1 C
18592387 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18592886 original size:898 final size:898
Alignment explanation
Indices: 18590688--18594165 Score: 4383
Period size: 907 Copynumber: 3.9 Consensus size: 898
18590678 ATGTGCTGCA
* * * * *
18590688 GCAACCTTCGGTCTGGTCCGATCTTAGACTGGTAATGAACTCCGTGTGCCTAAGCCAACCGATAA
1 GCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * * * * * *
18590753 AACGAATG-GGTAGACAGGCGAGCAGGCACTATGCCGGCCAAAGAGACGCGATGAGCAAGCCGTG
66 AACG-A-GCGG--G-CGGGCGGGCGGGCACTACGCCGG-CAGAGAGACGGGATGCGCAAGCCGTG
* *
18590817 GATCGATAGGGTGGTTGGTGGGATTAGGCACATCTTCATATTTCTGCATG-G-CAATGCCATTTT
125 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ATGTGCCAATGCCATTTT
* * * *
18590880 TATGGGTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGATGACT
188 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * ** * *
18590945 CATTTTTTATTTTTCACGATTTTTAAAACTTTTTATGGTTTGGGATGTTTTAAAATTTTTTCGAA
253 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGGA
* * *
18591010 AGAATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTTTTGGCATGCACAAAAAAAT
318 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
18591075 TCAACTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAG
383 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
18591140 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCT
448 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
18591205 CGAGGTGTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
513 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** **
18591270 TGTGCACACCCCCCCGCCGACCCCCCCGATCACCGGAACCCCAACACCGCCGGTCAGGTTCTCCG
578 TGCGCACA-CCCCCC-CCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * * * *
18591335 GTGATGC-TCTGATGATGGTGCCCTGGCGATGAAAAATGCAGCCCCAGCACATGCCTGAGCCCAG
641 ACGATGCTTC-GACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
* * * * * *
18591399 CATGTGCTGCTGCAACCCTCGGTCTGGGCCGATCTTAAACTGGGAATGAACTCCATATGCTTAAA
705 CATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
*
18591464 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGG-GCTCAACCGGCC
770 CTGGGAATGAACTCCGTATGCCT-AGTCAACCCACGAAACGAGCGTGC-GGGCGCTCAACCGGCC
* * * * *
18591528 AGAGGGGCGGGATGCGTAAGCCAGGGATCGATCGGG-TCCCACTGTACGTGCTATCAAGCCTACT
833 AGAGGGGCGGGATGCGTAAGCGA-GGATCGATCGGGTTCCC-CTCTACGTGCTGTCAATCCTGCT
*
18591592 CCC
896 ACC
* * * * * *
18591595 ACAGCCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGA
1 GCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* *
18591660 AACGAGTGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGG
66 AAC----GAGCGGGCGGGCGGGCGGGCACTACGCCGG-CAGAGAGACGGGATGCGCAAGCCGTGG
* * * * *** *
18591725 ATCGATAGGGTGGTAGGCGGGTTTAGCCATATCTTTATATTTCTGCATGCCAATGCCATTTTAAT
126 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
* * * * * *
18591790 GGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCATGTAAAGTTTCATGCCAAGACGATTTGT
191 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
18591855 TTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTACAGGATTTTTTAAAATTTTTTCGGAAGG
256 TTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
* * * * *
18591920 AGTTTTGGTCCAAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAAATCA
321 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
18591985 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACT
386 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
18592050 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGGTCTTTAA-GGGGTGTGAGTTCTCAA
451 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* *
18592114 GGTTTGATGAGGGATAGGGGGCCATTATAAGTGCCAAGTACCAGCACCCATCGCACATCATGTGC
516 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
18592179 GCACA-GCCCCCAG-CCCCCCCGATCGTCGGAACCCCAATGCCGTCTGTCAGGTTCTCCGACGAT
581 GCACACCCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * *
18592242 GCTTCGACGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
646 GCTTCGACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
18592307 CTGCCGCAATCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGA
711 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
18592372 ATGAACTCCATATGCCTCAGTCAACCAACAAAACGAGCGTGCGGGCGCACAACCGGCCAGAGGGG
776 ATGAACTCCGTATGCCT-AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGG
* * *
18592437 CGGGATGCGCAAGCTGAGGATCGGTCGGGTTCCCCTCTACGTGCTG-CTGATCCTGCTACC
840 CGGGATGCGTAAGC-GAGGATCGATCGGGTTCCCCTCTACGTGCTGTC-AATCCTGCTACC
*** * * * *
18592497 GCAACCCTCGATCCAATCCGATCTTAGACTGGGAATTATCTCCGTATGCCTAATCCATCCGATGA
1 GCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * * * **
18592562 AACGAGCGGGCGGGCGGGTGGGCACTACGTCGGCTAGAGAGACGAGATGCGCAATCTATGGATCG
66 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGC-AGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
18592627 TTAGGGTGGTAGGTGGGTTTAGGGATATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
*
18592692 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
18592757 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTT
260 TATTTTTCACGATTTTTAAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTT
* * *
18592822 TTGTCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
18592887 AAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * **
18592952 TGGCTACTGACAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAATTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
*
18593017 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** * *
18593082 ACCCCCCCCGAAACCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCTG-CGAGGCT
585 ACCCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GACGATGCT
* * * * * * * *
18593146 CCGGCGATCGTGCCCCAGCGAAAAAAAATGCAGCACCAGCACATGCCCTAGCCCAGTATCTGCTG
649 TCGACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
18593211 CTGCAACCCTCCGTCTGGTCCGATCTTAGACTGGGAATGAA---C---T-C-T-G--T----ATG
714 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * *
18593261 ----CC-TA-G----GTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCGGCCAAAGGGGTGGG
779 AACTCCGTATGCCTAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGG
* * * * * * *
18593316 ATGCGTAAGCCGGGGATCGATTGGGTCCCCCTCTACGTGCTGTCAATCTTGTTGCT
844 ATGCGTAAG-CGAGGATCGATCGGGTTCCCCTCTACGTGCTGTCAATCCTGCTACC
* * *
18593372 GCAACCCTCGATTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * * * *
18593437 AA-GAAGCAGGCGGGCGGTTGGGCGGGCACTACGCCGAACAAAAAAACGGGATGCGCAAGCCGTG
66 AACG-AGCGGGCGGGC----GGGCGGGCACTACGCCG-GCAGAGAGACGGGATGCGCAAGCCGTG
* * *
18593501 GATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTT-T-TGCATGCCGATGCCATTTA
125 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGCCATTTT
* * *
18593564 TATGGCTTGTAAAATCATACAATGGTCCTTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACT
188 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
18593629 CATTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTTGG
253 C-GTTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGG
* * * * *
18593694 AAGGAGTTTTGGCCCCAAACTTGTTAGACGTGATCCTTATATTTTTGTTGGCAGGCATAAAAAAA
317 AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * * * *
18593759 TTCAGCTAAAATCTGGAAGTGTACAACATTTTGTGACCATGTAAAAAAAGTGTCCCTATTTTAGA
382 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
** *
18593824 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATATTCTTTAAAGGGGTGTGA-TTC
447 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** * *
18593888 TTGAGGTTTGATGAGGGATAGGGGGCCAACATATGGGCCAAGTACCAGCACCCATCGCACATCAT
512 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
18593953 GTGCGCACA-CCCCCCCGGCCCCCCCGAACGTCGGAACCCCAATGCCGTCGTTCAGGTTCTCCGA
577 GTGCGCACACCCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * ** * **
18594017 CAATGCTTCGGCAATGGTGCCCCGATGAAGAAAAATGCTGCACCAGCACATGCTTGAGCCCAGCA
642 CGATGCTTCGACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCA
* * *
18594082 TGTGCTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACT
707 TGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
*
18594147 GGGAATGAACTTCGTATGC
772 GGGAATGAACTCCGTATGC
18594166 TTAGACAGGG
Statistics
Matches: 2220, Mismatches: 300, Indels: 109
0.84 0.11 0.04
Matches are distributed among these distances:
874 1 0.00
875 150 0.07
876 2 0.00
877 3 0.00
878 140 0.06
879 217 0.10
880 228 0.10
881 3 0.00
882 2 0.00
884 1 0.00
885 1 0.00
886 4 0.00
887 1 0.00
889 1 0.00
890 1 0.00
892 1 0.00
893 4 0.00
894 1 0.00
895 1 0.00
897 2 0.00
898 388 0.17
899 83 0.04
900 6 0.00
901 139 0.06
902 308 0.14
903 9 0.00
904 4 0.00
906 82 0.04
907 431 0.19
908 1 0.00
909 1 0.00
910 3 0.00
911 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTAAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTC
GACGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGAT
GCGTAAGCGAGGATCGATCGGGTTCCCCTCTACGTGCTGTCAATCCTGCTACC
Found at i:18594151 original size:26 final size:26
Alignment explanation
Indices: 18594115--18594194 Score: 133
Period size: 26 Copynumber: 3.1 Consensus size: 26
18594105 GGTCTGATCT
*
18594115 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTTCGTATGCC
*
18594141 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTTCGTATGCC
*
18594167 TAGACAGGGAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTTCGTATGCC
18594193 TA
1 TA
18594195 AGTCAACGCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCC
Found at i:18594655 original size:758 final size:758
Alignment explanation
Indices: 18593484--18594922 Score: 2079
Period size: 758 Copynumber: 1.9 Consensus size: 758
18593474 ACAAAAAAAC
* * * *
18593484 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTTTGCA
1 GGGATGCGCAAGACATGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACA
* * * * *
18593549 TGCCGATGCCATTTATATGGCTTGTAAAATCATACAATGGTCCTTTAAGCCTTCGCGTGAAGTTT
66 TGCCAATACCATTTATATGGCTTGTAAAATCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * *
18593614 CATGGCAAGACGACTCATTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCAGGATTTT
131 CATGGCAAGACGACTCATTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTAAGAATTTT
* *
18593679 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGTTAGACGTGATCCTTATATTTTTGTTG
196 TCAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTG
* * * *
18593744 GCAGGCATAAAAAAATTCAGCTAAAATCTGGAAGTGTACAACATTTTGTGACCATGTAAAAAAAG
261 GCAGGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTCACCATGTAAAAAAAG
* *
18593809 TGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATATTCTTTA
326 TGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTA
** ***
18593874 AAGGGGTGTGATTCTTGAGGTTTGATGAGGGATAGGGGGCCAACATATGGGCCAAGTACCAGCAC
391 AAGGGGTGTGATTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAACAGCCAAGTACCAGCAC
* *
18593939 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA-A-CGTCGGAACCCCAATGCCGTC
456 CCATCGCACATCATGTACGCACA-CCCCCCGGCCCCCCCGATATC--CGGAACCCCAATGCCGTA
* * * * *
18594002 GTTCAGGTTCTCCGACAATGCTT-CGGCAATGGTGCCCCGATGAAGAAAAATGCTGCACCAGCAC
518 GGTCAGGTTCTCCGACAAT-ATTCCGACAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
** * * * *
18594066 ATGCTTGAGC-C-CAGCATGTGCTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGA
582 ATGC-CCA-CACGCAGCACGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGA
18594129 ACTCCGTATGCCTAGACTGGGAATGAACT-TCGTATGCTTAGACAGGGAATGAACTTCGTATGCC
645 ACTCCGTATGCCTAGACTGGGAATGAACTCTC-TATGCTTAGACAGGGAATGAACTTCGTATGCC
18594193 TAAGTCAACGCACGAAACGAGCGTGCAGACGCTCAGCCGGCTAGAGGGGA
709 TAAGTCAACGCACGAAACGAGCGTGCAGACGCTCAGCCGGCTAGAGGGGA
*
18594243 GGGATGCGCAAGACATGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACG
1 GGGATGCGCAAGACATGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACA
* * *
18594308 TGCCAATACCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAATCCTTCACGTGAAGTTT
66 TGCCAATACCATTTATATGGCTTGTAAAATCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTT
18594373 CATGGCAAGACGACTCA-TTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTAAGAATTTT
131 CATGGCAAGACGACTCATTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTAAGAATTTT
* *
18594437 TCAAACTTTTTTTAGG-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
196 TCAAAATTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTT
* * * * *
18594501 GGCATGG-ACAAAAAAATTTAGCTAAAAACTCGAAGTGTACCAGATTTTGTCACCATTTGAAAAA
260 GGCA-GGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTCACCATGTAAAAAA
* * * *
18594565 ATTGTGCC-ATTTCAGACACTTTAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
324 AGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTT
* *
18594629 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAACAGCCAAGTACCAG
389 TAAAGGGGTGTGA-TTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAACAGCCAAGTACCAG
* ** *
18594694 CACCCATCGCACATCATGTACGCAGACCCCCCGGCCCCCTTGATATCCGGAACCTCAATGCCGTA
453 CACCCATCGCACATCATGTACGCACACCCCCCGGCCCCCCCGATATCCGGAACCCCAATGCCGTA
** ** * *
18594759 GGTCAGGTTCTTTGATGATATTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
518 GGTCAGGTTCTCCGACAATATTCCGACAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * *
18594824 TGCCCACACGCAGCACGTGTTGTCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACT
583 TGCCCACACGCAGCACGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACT
*
18594889 CCGTATGCTTAGACTGGGAATGAACTCTCTATGC
648 CCGTATGCCTAGACTGGGAATGAACTCTCTATGC
18594923 GTAAGTCAAC
Statistics
Matches: 600, Mismatches: 71, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
755 1 0.00
756 4 0.01
757 226 0.38
758 230 0.38
759 139 0.23
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (758 bp):
GGGATGCGCAAGACATGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACA
TGCCAATACCATTTATATGGCTTGTAAAATCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCATTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTAAGAATTTT
TCAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTG
GCAGGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTCACCATGTAAAAAAAG
TGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTA
AAGGGGTGTGATTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAACAGCCAAGTACCAGCAC
CCATCGCACATCATGTACGCACACCCCCCGGCCCCCCCGATATCCGGAACCCCAATGCCGTAGGT
CAGGTTCTCCGACAATATTCCGACAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
CCACACGCAGCACGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCG
TATGCCTAGACTGGGAATGAACTCTCTATGCTTAGACAGGGAATGAACTTCGTATGCCTAAGTCA
ACGCACGAAACGAGCGTGCAGACGCTCAGCCGGCTAGAGGGGA
Found at i:18595814 original size:26 final size:26
Alignment explanation
Indices: 18595764--18595815 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18595754 CGGTCCGATT
* *
18595764 TTAGACTGGGAATGAACTCTATATGC
1 TTAGACTGAGAATGAACTCCATATGC
*
18595790 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCATATGC
18595816 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCATATGC
Found at i:18596585 original size:901 final size:904
Alignment explanation
Indices: 18594243--18601169 Score: 8714
Period size: 902 Copynumber: 7.7 Consensus size: 904
18594233 CTAGAGGGGA
* * *
18594243 GGGATGCGCAAGACATGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
* * *
18594308 TGCCAATACCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAATCCTTCACGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * ** *
18594373 CATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTAAGAATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
* * * * *
18594438 CAAACTTTTTT-TAGGAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
196 TAAAATTTTTTCGAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * * * *
18594502 GCATGGACAAAAAAATTTAGCTAAAAACTCGAAGTGTACCAGATTTTGTCACCATTTGAAAAAAT
261 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
18594567 TGT-GCCATTTCAGACACTTTAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* **
18594631 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAACAGCCAAGTACCAGCA
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * ** * * **
18594696 CCCATCGCACATCATGTACGCAGACCCCCCGGCCCCCTTGAT-ATCCGGAACCTCAATGCCGTAG
456 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT-CGGAACCCCAATGCCGCCG
** * **
18594760 GTCAGGTTCTTTGATGATATTC-CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
520 GTCAGGTTCTCCGACGATGCTCTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
* * * *
18594824 TGCCC-A-CACGCAGCACGTGTTGTCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAA
585 TGCCCGAGC-C-CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* *
18594887 CTCCGTATGCTTAGACTGGGAATGAACTCTC-TATGCGTAAGTCAACCCACGAAATGAGCGTGCG
648 CTCCGTATGCTTAGACTGGGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * * *
18594951 GGCGCTCAGCCGGCCAGAGGGGCAGGATGGGTAAGCCGGGGGTCAACCGAGTCCCCCTTTGCATG
712 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACATG
* ** * * * * **
18595016 TTGCTAATCCTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGATTGGGAATGCACTCTATAT
777 CTGCCGATCCTGCTGCC-CAACCTTCAGTTC-GGTCTGATCTTAGACTAGGAATGAACTCCGTAT
* * *
18595080 GCCTAAGCCAACCGACG-AA--A--TGA---GCGGGCGGGTGGGCACTACGCCGGCCAGGGAGAC
840 GCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGAC
* * * * * *
18595137 GAGATGCGCAAGCCGTGGATCGATAGGGCGATAGGTGGGTTTAGGTATATCTTCATATTTCTGCG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
* * *
18595202 TGCCGATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTCCACGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* ** *
18595267 CATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
* * *
18595332 TAAAA--TTTTCG-GAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
196 TAAAATTTTTTCGAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * * *
18595394 GCTTGCACAAAAAAATTAAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATG
261 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * *
18595459 TGTCCCCATTTCAGACACTGTAACGGTTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * * *
18595524 AGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGAGCCCAATATAAGGGTCAAGTACCAGCA
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * ***
18595589 CCCATCACACATCATGTGCGCACACCCCCCGGCCCTCCCGATCGTTC-GAACCCCAATGTCATTG
456 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG-TCGGAACCCCAATGCCGCCG
* ** * * *
18595653 GTCAGGTTCTCTGGTGATGCTC-CGACGATGGTGCCCCGGTGAAGAAAAATGTGACACCAGCACA
520 GTCAGGTTCTCCGACGATGCTCTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
** * *
18595717 TGCTTGAGCCCAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCGATTTTAGACTGGGAATGAACT
585 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
** * * *
18595782 CTATATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGC
650 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
18595847 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACATGCTG
715 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACATGCTG
* * ** *
18595912 CCGATCTTGCTGCCCTTACCTTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
780 CCGATCCTGCTGCCC-AACCTTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCT
* * * *
18595977 AAGCCAACCAACGAAACGAGTGGACGGGCGGGCGGGTGGGCACTACGTCGGCCAAAGAAAC
844 AAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGAC
*
18596038 GGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
*
18596103 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
18596168 CATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATGTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
* *
18596233 TAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCATATATTTTTGTTG
196 TAAAATTTTTTCGAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * * * *
18596297 CCATGCGCAAATAGATTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
261 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
18596362 TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
18596427 A-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGCTAGGGGGCCAATATAAGGGCCAAGTAGCAGCA
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* *
18596491 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACTCCAATGCCGCCGG
456 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
** * * *
18596556 TCAGGTTCTCCGGTGAAGCT-TAG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
521 TCAGGTTCTCCGACGATGCTCTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * * * *
18596619 ACCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTC
586 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * * * * *
18596684 CATATGCTTAGACTAGGAATGAACTCCGTATACGTAAGTCAACCCATGAAATGAGCATTCAGGCG
651 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * ** * *
18596749 CTCAGTCGCCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCACTACGTGCCGC
716 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACATGCTGC
* * * * * ** * **
18596814 C-ATTCATGCT-ACCATAACTCTCAATCCGGTCCAATCTTAGACTACGAATGAACTCCGTATGTG
781 CGA-TCCTGCTGCCCA-ACCT-TCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCC
** * *
18596877 TAAGCCAACCGACGAAACGAGCGGGTGGGCAGGCGGGTGGGCACTACGTCGACCAGAGAGAC
843 TAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGAC
* * * * * * * *
18596939 GGGATGCGCAAGCTGTGGATCGATAGGGTAGCAAGTGGGTTTAGGCACATCTTCATCTTTTTGCA
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
* * *
18597004 TGCAAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * * * *
18597069 CATGGGAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTAGCAGCTCGAGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
* * * *
18597134 TTAAATTTTTTC-AGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTG
196 TAAAATTTTTTCGAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * * *
18597198 GCATGCATAAAAACATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGATAAAAG
261 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
18597263 TGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*** * *
18597328 AGGGGGTGTGAGTTCTCGAGGTTTGATGATATATAGGGGGCCAATATAAGGGCCAAGTGCCAACA
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
** * * *
18597393 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTAGATCGCCGGAACCCCAATGCCACGGG
456 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
** * *
18597458 TCAGGTTCTCCGGTGATGCTCCCG-CGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACAT
521 TCAGGTTCTCCGACGATGCTCTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
** * * **
18597522 GCCCGAGCGTAGCATGTGCTGTCGTAACCCTCGGTCCATTCCGATCTTAGACTGGGAATGAACTC
586 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * **
18597587 TGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCAAGCG
651 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
** * * * * * *
18597652 CTCAATCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCTTTGCGTGCTAC
716 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACATGCTGC
* * * * * * * *
18597717 TGATCCTGCTACCGTAACCCTCGGTCCGATC-CATTCTTAGACTCA-GAATGAACTCCGTATGCC
781 CGATCCTGCTGCC-CAACCTTCAGTTCGGTCTGA-TCTTAGACT-AGGAATGAACTCCGTATGCC
* * * * * *
18597780 TAAGCCAACCGATGAAATGAACGGACGGGCGGGCGAGTGGGCACTACGTCGACCAGAGAGAT
843 TAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGAC
* *
18597842 GGGATGCGCAA-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACA
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
* * *
18597906 TGCCAATGCCATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACATGAATTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * **
18597971 CATAGCAAGACGACAT-GTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGGGATTTT
131 CATGGCAAGACGAC-TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
* * *** *
18598035 TTAAAATTTTTTTG-GAAGGAGTTCTGGCCCCAAAAGGGGTAGACATGATCCTTCTATTTTTGTT
195 TTAAAATTTTTTCGAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
* ** * *
18598099 GGCATGCACAAAAAAATTCAGCTAAAAATTTAAAATGTACAAGATTTTGGGACCATTTGAAAAAA
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
18598164 GTGTCCCCATTTCGGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * *
18598229 AAGGGGATGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGC
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * ** * *
18598294 ACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCTCGATCGTCAAAACCCCGATGCCTCCG
455 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * ** * **
18598359 GTCAGGTTCTCTGGCGATGCTC-CGGTGATGGTGCCCCGGTGAAGAAAAATGCGGTGCCAGCACA
520 GTCAGGTTCTCCGACGATGCTCTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
* * * * * * *
18598423 TGCTCGAGCCTAGTATGTGCAGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACT
585 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
18598488 CCGTATGCTTAGACTGGGAATGAACTCCATCTGCCTAAGTTAACCCACGAAACGAGCATGCGGGC
650 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * * *
18598553 ACTCAGCCGACCAAAGGGGCGGGATGCACAAGTCGGGGATCGATCGGGTCCCACTATCCATGCTG
715 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACATGCTG
* * * * *
18598618 CCAATCCTGCTGCCACAACCTTCAGTCCGATCTGATCTTCGACTACGAATGAACTCCGTATGCCT
780 CCGATCCTGCTGCC-CAACCTTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCT
* * * * ** *
18598683 AAGCCAACCGACGAAACGAGCGGACGGGCGGACGGGCGGTCCCTACG-CTAACCACAGAGAC
844 AAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGTGGGCACTACGTC-GGCCAGAGAGAC
* ** * **
18598744 GGGATGCACAAGCCACGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
*
18598809 TGCCAATGCCAATTTTAT-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
18598873 AATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
** * * ** *
18598938 GGAAATTTTTTTG-GAAGGATTTTTGG-CAAAAGACTTGGTAGACATGATCCTTCTATTTTTGTT
196 TAAAATTTTTTCGAGAAGGAGTTTTGGCCCCAA-ACTTGGTAGACATGATCCTTGTATTTTTGTT
* *
18599001 GGCATGCACAAAAAAATTCAGCTAAAAATTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
18599066 GTGTCCCCATTTCAAACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * * *
18599131 AAGGGGGTGTAAATTCTCGAGGTTTGATGAGGGATAAGGGCCCAATATAAGGGCCAAGTACTAGC
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * ** * * *
18599196 ACCCATCACACATCTTGTGCGCACACCCCCCGACCCCCCCGATCACCAGAACTCCAGTGCCGCCG
455 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * *
18599261 GTCAGGTTCTCCGACGATGCTCT-GGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACA
520 GTCAGGTTCTCCGACGATGCTCTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
* * * *
18599325 TGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACT
585 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
18599390 CCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGC
650 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* ** * ** *
18599455 GCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTT-TGTGTT
715 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT-TTACATGCT
** * * * * * *
18599519 GTAGATCCTACTGACACAACCCTCTG-TCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATCC
779 GCCGATCCTGCTG-CCCAACCTTCAGTTC-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
* * ** * * **
18599583 CTAAGCCAACCGACGAAAAGAACGGGTGGGTGGGCGGGCGGGCACTACACCGGCCAGAGAGAC
842 CTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGAC
* *
18599646 GGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
*
18599711 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA----
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
18599772 -ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTCCGAGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
* *
18599836 TAAAATTTTTTC-AGAAGGAGTTTTGGCCCCTAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
196 TAAAATTTTTTCGAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * * * *
18599900 GCATGCACAAAACAATTCAGCTATAAACTCGAAGAGTTCATGATTTTGTGACCATTTGAAAAAAG
261 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * *
18599965 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACTTGGAAAATCTCAAATTCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
18600030 AGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCA
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
18600095 CCCATCGCACATCATGTGCGCACACCCCCCCCGACCCCCCCGCTCATCGGAACCCCAATGTCGTC
456 CCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC
* * **
18600160 GGTCAGGTTCTCCGACGATGCT-TCGACGATGGTGCCCCGGTGAAGAAAAATGTGATACCAGCAC
519 GGTCAGGTTCTCCGACGATGCTCTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
* * * *
18600224 ATGCCCGAGCCCAGCATGTGCTGCCCCAACCCTCGGTCTGGTCTGATCTTTGACTGGGAATGAAC
584 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* * * ** **
18600289 TCCGTACGCTTAGACTGGAAATGAACTCCATATGCCTAAGTCAACCCATAAAACGAGCGCACGGG
649 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * *
18600354 CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGTGTCCCCC---AC-T--T
714 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACATGCT
* * * * *
18600413 -----T-GTGCTG--------TC-GATC---CTG--CTTAGCCTGGGAATGAACTCCGTATGGCT
779 GCCGATCCTGCTGCCCAACCTTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCT
* * * *
18600458 AAGCCAACCGATGAAACGA---G-CGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGATAC
844 AAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGAC
* * *
18600515 GGGATGCACAAGCTGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTC-AGC
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-C
* *
18600579 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTT
65 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
18600644 TCATGGCAAGATGACTCGTTTTCTATTTTTTAAGATTTTTTAAACTTTTTGCGGTTCGGGATTTT
130 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
* *
18600709 TTAAAATTTTTTC-AGAAGTAGTTTCGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
195 TTAAAATTTTTTCGAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
* *
18600773 GGCTTGCACAAAAAAATTCAG-TGAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
260 GGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
** *
18600837 AGTGTCCCCAGCTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTT
324 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* **
18600902 TAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATATAGGGCCAATATAAGGGCCAAGTACCAG
389 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
18600967 CACCC-TCGCACATCATATGCGCACACCCCCCCCGG-GCGCCGGATCATCGGAACCCCAATGCCG
454 CACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * * * * *
18601030 CCGGTCAGGTTCTCTGACGCTGCTCT-GATGATGGTGCCCCGACGAAGAAAAATGCAGCCCCAAC
517 CCGGTCAGGTTCTCCGACGATGCTCTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
* * ** * * *
18601094 ACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCATTCTGGTCTGATCTTAGAGTGGGAATGA
582 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
18601159 ACTCCGTATGC
647 ACTCCGTATGC
18601170 CTAAGCCAAC
Statistics
Matches: 5258, Mismatches: 712, Indels: 148
0.86 0.12 0.02
Matches are distributed among these distances:
868 1 0.00
869 147 0.03
870 1 0.00
872 141 0.03
873 72 0.01
874 297 0.06
875 2 0.00
878 1 0.00
879 4 0.00
888 4 0.00
889 1 0.00
892 114 0.02
893 445 0.08
894 184 0.03
895 2 0.00
896 2 0.00
898 311 0.06
899 3 0.00
900 260 0.05
901 871 0.17
902 1806 0.34
903 583 0.11
904 5 0.00
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
TAAAATTTTTTCGAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
TCAGGTTCTCCGACGATGCTCTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACATGCTGC
CGATCCTGCTGCCCAACCTTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGAGCGGACGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGAC
Found at i:18597607 original size:26 final size:26
Alignment explanation
Indices: 18597567--18597619 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18597557 CCATTCCGAT
* *
18597567 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18597593 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18597619 C
1 C
18597620 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18599400 original size:26 final size:26
Alignment explanation
Indices: 18599371--18599423 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18599361 CCGGTCTGAT
18599371 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18599397 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18599423 C
1 C
18599424 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18601585 original size:24 final size:24
Alignment explanation
Indices: 18601553--18601598 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
18601543 CTATTTGATG
18601553 GCTACTGGCAGCAAACCTGTAATA
1 GCTACTGGCAGCAAACCTGTAATA
18601577 GCTACTGGCAGCAAACCTGTAA
1 GCTACTGGCAGCAAACCTGTAA
18601599 AATCTCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.20
Consensus pattern (24 bp):
GCTACTGGCAGCAAACCTGTAATA
Found at i:18602058 original size:714 final size:712
Alignment explanation
Indices: 18600429--18603311 Score: 3813
Period size: 714 Copynumber: 4.1 Consensus size: 712
18600419 GTCGATCCTG
* * * * *
18600429 CTTAGCCTGGGAATGAACTCCGTATGGCTAAGCCAACCGATGAAACGAGCGGGCA-GGCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAACGGGCAGGGCGGGCGG
* * * * *
18600493 GCACTACGTCGGCCAGAGATACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAAGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
18600558 GGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
18600623 GTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC-GTTTTCTATTTTTTAAGATTTTTTAA
196 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAGTTTTCTATTTTTCACGATTTTTGAA
* * * *
18600687 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGTAGTTTCGGCCCCAAACTTGGTAGA
261 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * **
18600752 CATGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAG-TGAAAAACTGGAAGTGTACAAG
326 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCAAAGTGTACAAG
* * * * * *
18600816 ATTTTGTGACCATTTGAAAAAAGTGTCCCCAGCTCAGACACTTTAATGGCTACTGGCAGCAAACT
390 ATTTTGTGACCATTTGAAAAAACTG---GCAG--CAAACACTGTAATAGCTACTGGCAGCAAACC
**
18600881 TGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATATAGGGCC
450 TGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * * *
18600946 AATATAAGGGCCAAGTACCAGCACCC-TCGCACATCATATGCGCACACCCCCCCCGGGCGCCGGA
515 AATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCGA
* * **
18601010 TCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGCTGCTCTGATGATGGTGCCCCGACGA
580 TCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * * ** ** * *
18601075 AGAAAAATGCAGCCCCAACACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCATTCTGGTCT
645 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCC
18601140 GAT
710 GAT
* * *
18601143 CTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGACGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAACGGGC--A-GGGCGGG
* *
18601208 CGGGCACTACGCCAGCCAGAGAGA-GAGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGG
63 CGGGCACTACGCCGGCCAGAGAGACG-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
** * * *
18601272 TTTACACACATCTTCATAATTCTGCATGCCAATGCTATTTTTAAGGCTTGTAAATTCATACAATG
127 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
18601337 GTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGATGACTCAATTTT-TATTTTTCACGGTTTT
192 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAGTTTTCTATTTTTCACGATTTT
*
18601401 TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGG
257 TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
*
18601466 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
322 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* ****
18601531 AAGATTTTGTGACTATTTGATGGCTACTGGCAGCAAAC-CTGTAATAGCTACTGGCAGCAAACCT
387 AAGATTTTGTGACCATTTGA-AAAAACTGGCAGCAAACACTGTAATAGCTACTGGCAGCAAACCT
*
18601595 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
451 GTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
18601660 ATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCACCCCCGACCCCTCCGA
516 ATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCCGGCCCC-CCGA
* * * * * * * *
18601725 TCGTCGGAACCCTAATGCCGCCGGTTAAGTGCT-TCGGCGATGCTCCGGCGATGGTGCCCTGGCG
580 TCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCT-GACGATGCTCCGGCGATGGTGCCCCGACG
* * *
18601789 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTGGTCCAGCC
644 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTC
18601854 CGAT
709 CGAT
* * * *
18601858 CTTAGATTGGGAATGAACTCCGTATGCCT-AGCTAATCGATGAAACAAACGGGCGGAAGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAACGGGC---AGGGCGGG
* * *
18601922 CAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATACGGTGGTAGGTGGGT
63 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
18601987 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
128 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
** * * * *
18602052 TCCCTTAATTCTTCACGTAAAGTTTCATGCCAAGACGACT-TGTTTTCTATTTTTCATGATTTTT
193 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAGTTTTCTATTTTTCACGATTTTT
* * * *
18602116 GAAACTTTTTACGGTACAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCAAAACTTGGT
258 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
*
18602181 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* * ****
18602246 AGATTTTATGACTATTTGATGGCTACTGGCAGCAAAC-CTGTAATAGCTACTGGCAGCAAACCTG
388 AGATTTTGTGACCATTTGA-AAAAACTGGCAGCAAACACTGTAATAGCTACTGGCAGCAAACCTG
* * *
18602310 TAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAA
452 TAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
18602375 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCGTACACCCCCCCCGGCCCCCTGATC
517 TATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCGATC
* * ** * ** *
18602440 ATCGGAACTCCAATACCATCGATCAGGTTCTCTGGTGATGCTCCGGCGATGGTGCCCCGATGAAG
582 ATCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGAAG
* * *
18602505 AAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCAGCTACAACCCTCGGTCCGGTCCGA
647 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGA
18602570 T
712 T
* * *
18602571 CTTTGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG----AAA---TCA--GCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAACGGGCAGGGCGGGCGG
* * * * **
18602627 TCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATAGATAGGGTGGTAGGTCCGTTTA
66 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
18602692 GGCAGATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGGTCC
131 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
18602757 CTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCA-TTTTTTATTTTTCACGATTTTTGAA
196 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAGTTTTCTATTTTTCACGATTTTTGAA
* * ** * * * * *
18602821 ACTTTTTGCGGGTC-GAGAAGTTTTAAAAATTTTTCGGTAGGTGTTTTGGTCCCAAA--TGGTAG
261 ACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
18602883 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGATAAAAACTCGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
* * * ** * *
18602947 ATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAACTGGCAGCA----A-ACACTGTAATAGCTACTGGCAGCAAACC
18603012 TGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
450 TGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
18603077 AATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACA-CCCCCCAGGCCCCTCGA
515 AATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCGA
** * * *
18603141 TCGCCGGAACCCCAATGCTGCCGGTCAGGTTCT-TCGACGATGCTCTGGTGATGGTGCCCCGACG
580 TCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCT-GACGATGCTCCGGCGATGGTGCCCCGACG
* * * *
18603205 AAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTT
644 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTC
18603270 CGAT
709 CGAT
* *
18603274 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
18603312 CACAGAACGA
Statistics
Matches: 1920, Mismatches: 224, Indels: 61
0.87 0.10 0.03
Matches are distributed among these distances:
698 6 0.00
699 38 0.02
700 43 0.02
701 1 0.00
702 229 0.12
703 161 0.08
704 130 0.07
707 1 0.00
710 3 0.00
713 254 0.13
714 593 0.31
715 140 0.07
716 4 0.00
717 1 0.00
718 308 0.16
719 8 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (712 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAACGGGCAGGGCGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAACTGGCAGCAAACACTGTAATAGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCGATCATCG
GAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:18602299 original size:24 final size:24
Alignment explanation
Indices: 18602267--18602312 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
18602257 CTATTTGATG
18602267 GCTACTGGCAGCAAACCTGTAATA
1 GCTACTGGCAGCAAACCTGTAATA
18602291 GCTACTGGCAGCAAACCTGTAA
1 GCTACTGGCAGCAAACCTGTAA
18602313 AATCTCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.20
Consensus pattern (24 bp):
GCTACTGGCAGCAAACCTGTAATA
Found at i:18604185 original size:26 final size:26
Alignment explanation
Indices: 18604156--18604208 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18604146 CTGGTCCGAT
*
18604156 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18604182 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18604208 C
1 C
18604209 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18604775 original size:24 final size:24
Alignment explanation
Indices: 18604743--18604791 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
18604733 TGACCATTTG
18604743 ATGGCTACTGCCAGCAAACCTGTA
1 ATGGCTACTGCCAGCAAACCTGTA
*
18604767 ATGGCTACTGGCAGCAAACCTGTA
1 ATGGCTACTGCCAGCAAACCTGTA
18604791 A
1 A
18604792 AATCTCAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (24 bp):
ATGGCTACTGCCAGCAAACCTGTA
Found at i:18607630 original size:707 final size:705
Alignment explanation
Indices: 18605981--18608109 Score: 3101
Period size: 706 Copynumber: 3.0 Consensus size: 705
18605971 CGGCGGGCAG
* * *
18605981 GCGGGCGGGCACTACTTCGGCCAGAGAG-CGGGATGCCCGCAAGCCTGTGGATCGATAGGGTTGT
1 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT--ACGCAAGCC-GTGGATCGATAGGGTGGT
* * *
18606045 AGGTGGGGTTAGGGCACAGCTTCATATTTCTGCATG-CCAATACCATTTTTATGGCTTGTAAATT
63 AGGTGGGTTTA-GGCACATCTTCATA-TTCTGCATGCCCAATGCCATTTTTATGGCTTGTAAATT
* *
18606109 CATACAATGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTC
126 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * **
18606174 ATGATTTTTAAAACTTTTTGCGGTTTCGGATTTTTTAAACTTTTTTTGGAAGGAGTTTTTACCCC
191 ATGATTTTTGAAACTTTTTGCGG-TTCGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCC
*
18606239 AAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
255 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
18606304 AAGTGTACAAGATTTTGCGACCATTTGAAAAAGGTGTCTCTATTTCAGACACTTTAATGGCTACT
320 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
18606369 GGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGCTGTGAGTTCTTGAGGTTTGATGAGG
385 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGG
* *
18606434 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCTCACATCATGTGCGCACACCCCCCC
450 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * * ** ** *
18606499 GGCCCCCCCGATCATCGGAATCCCAACGTCGCCGACCAGGTTCTCCGACGATTCTCCGGTGATGG
515 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGG
* * * * *
18606564 TGCCTCGACGAAGAAAATTACGGCACCAGCACATGCCCAAGCCCAACATGTGCTGACGTAACCCT
580 TCCCT-GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
* * * *
18606629 CGGTCTGGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCTAATCC-ACTCGACGAATCGA
644 CGGTCTGGTCCAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CGACGAAACGA
* * *
18606691 GCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGG
1 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
18606756 TGGGTTTAGGCACATCTTCATCTTTATGCATGCTGC--TGCCATTTTCATGGCTTGTAAATTCAT
66 TGGGTTTAGGCACATCTTCAT-ATTCTGCATGC-CCAATGCCATTTTTATGGCTTGTAAATTCAT
* **
18606819 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTAATTTTCTATTTTTCATG
129 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * * *
18606884 ATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCTCGAAA
194 ATTTTTGAAACTTTTTGCGG-TTCGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* * *
18606949 CTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCAAAG
258 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
18607014 TGTACAGGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGC
323 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
18607079 AGAAAACCTGTAAAATCCCAAATGCTTTTTAAGGTGG-TGTGAGTTCTCGAGGTTTGATGAGGGA
388 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGATGTGAGTTCTCGAGGTTTGATGAGGGA
*
18607143 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGG
452 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * *
18607208 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTC
517 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTC
** *
18607273 CCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGG
582 CCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGG
**
18607338 TCTAATCCAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
647 TCTGGTCCAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
**
18607397 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATAAACAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
18607462 TGGGTTTAGGTACATCTTCATATTCTGCCTGCCCAATGCCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTCTGCATGCCCAATGCCATTTTTATGGCTTGTAAATTCATAC
18607527 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * *
18607592 TTTTGAAACTTTTTGCGGGTCAGGATTTTTTAAAAATTTTTCGGAAGGTGTTTTGGCCCCAAACT
196 TTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
* * * *
18607657 TGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAAATCAGATAAAAACTCGAAGTG
260 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
18607722 TACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGAGACTTTAATTGCTACTGGCAG
325 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
18607787 CAAACCTGTAAAATCTCGAATACTCTTTAAGGGGATGTGAGTTCTCGAGCTTTGATGAGGGATGG
390 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
18607852 GGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACA--CCCCCGG-CC
455 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* * * *
18607914 CCCCGATCGCCGAAACCCCAATGCTGCCGGTCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCC
520 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGT-CCC
* * * * *
18607979 CGACGAAGAAAAATACGGCACCGGCACATGCCCGATCCCAGCATGTGCTGCCGCAAACCTCGGTC
584 TGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTC
* * *
18608044 TGGTCC-GATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
649 TGGTCCAG-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
*
18608100 GCGTGCGGGC
1 GCGGGCGGGC
18608110 GCTTAGCTGG
Statistics
Matches: 1272, Mismatches: 135, Indels: 31
0.88 0.09 0.02
Matches are distributed among these distances:
703 102 0.08
704 81 0.06
705 11 0.01
706 553 0.43
707 456 0.36
708 28 0.02
709 9 0.01
710 26 0.02
711 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (705 bp):
GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTCTGCATGCCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
TTTTGAAACTTTTTGCGGTTCGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTCCCTG
ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTG
GTCCAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
Found at i:18609862 original size:26 final size:26
Alignment explanation
Indices: 18609833--18609885 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18609823 CCGGTCCGAT
18609833 CTGACACTAGGAATGAACTCCGTATG
1 CTGACACTAGGAATGAACTCCGTATG
*
18609859 CTGAGACTAGGAATGAACTCCGTATG
1 CTGACACTAGGAATGAACTCCGTATG
18609885 C
1 C
18609886 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (26 bp):
CTGACACTAGGAATGAACTCCGTATG
Found at i:18610132 original size:901 final size:902
Alignment explanation
Indices: 18607320--18618956 Score: 14308
Period size: 906 Copynumber: 13.1 Consensus size: 902
18607310 GCCCAGCATG
* *** *
18607320 TGCTGCC-GTAACCCTCGGTCTAATCCAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ***
18607384 ACCGACG-AA--A-CGA-------GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATAAACAA
66 ACCGACGAAACGAGCGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
18607438 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATA-TTCTGCCTGCCCAATGCC
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG-CCAATGCC
18607502 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
18607567 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGGTCAGGATTTTTTAAAAATTTT
260 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
18607632 TCGGAAGG-TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCATAA
325 TTGGAAGGAT-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
18607696 AAAAAATCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
18607761 TCAGAGACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCGAATACTCTTTAAGGGGATGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
18607826 AGTTCTCGAGCTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18607891 ATCATGTGCGCACA-CCCCCGGCCCCCCGATCGCCGAAACCCCAATGCTGCCGGTCAAGTTCTCC
584 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** ** * * * *
18607955 GGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCGGCACATGCCCGATCCCAG
649 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
*
18608020 CATGTGCTGCCGCAA-AC-C--T-C-G---G----T---CT--G---G---TCCG-AT-CTTAGA
714 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
18608059 CT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTAGCTGGCTA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * *
18608123 GAGGGGAGGGATGCGTATA-CCGGGGATCGGTCGGGTCCCCATCTGTGTGCTGCTGATCC
844 GAGGGGCGGGATGCGCA-AGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
18608182 TGCTGCC-GCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18608246 ACCGACGAAACGAGCGTGTGGCCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
66 ACCGACGAAACGAGCGAG-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
18608311 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
18608376 ATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * * *
18608441 TAACTCGTTATCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
** * * * *
18608506 TCAGAAGGGTTTTTGGTCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAA
325 TTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAA
* ** * * * *
18608571 AAAAATTCAGCTAAAAACTTGAAGCATACAAGATTTTGCGACCAGTTGAAAAAACTATCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18608636 TGAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18608701 AGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
18608766 ATCATGTGTGAACACCCCCCGCTGGCTCCCTGATCGTCAGAACCTCAATGCCGCCGGTCAAGTTC
584 ATCATGTGCGCACA-CCCCC-C-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * ** * *
18608831 TCCGGCTATGCTCCAACGATGGTGCCCCGATGAAAAAAAATGTGGCACCAACACATGCCCAAGCC
646 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* * * * *
18608896 CAGAATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTTTGCTG
711 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
** * * * *
18608961 AGACTGGGAATGAACTTTGTATGCCTAAATTAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA
776 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* ** * * *
18609026 CCAGAGTGAAGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
841 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
18609088 TGGTGCCA-TAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * ** *
18609152 AGCGATGAAACAAGGGAGAGGGCGGGCAGGTGGGCACTACGCCTACCAGAGAGACGGGATGCACA
66 ACCGACGAAACGAGCGAG-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
18609217 AGCCGTGGATCGATAGGGTGGTAGCTGTGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18609282 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** **
18609347 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTTAGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * ** *
18609412 TTGGAAAGATTTTTGGCCCCAAAATTGGTAGATATGATCCTTGTATTTTTGTTGGCATGCATAAA
325 TTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18609477 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
390 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18609542 CAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
18609607 GTTCTCTAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * *
18609671 TCATGTGCGCACACCCCCCATCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
585 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* *
18609736 ACGATGCTCCGACGATGGTGCCCCGGCGAAGATAAATGCAGCACCAGCACATGCCCGAGCCCAGC
650 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGC
* * * * *
18609801 ATGTGCTGTCC-CAACCCTTGGTCCGGTCCGATCTGACACTAGGAATGAACTCCGTATGCTGAGA
715 ATGTGCTG-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
18609865 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAACCGACCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * * * *
18609930 -ATGGAGCGAGATGCACAAGTTGGGGACCGATCGAGTCCCCCTTTACGTTCTGCCGATCC
844 GA-GGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * *
18609989 T-CTGGCAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAAGCCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18610053 ACTGACGAAATGAGCGAGAGGGCTGGTGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCA
66 ACCGACGAAACGAGCGAG-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
** * *
18610118 AGCTATGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
18610183 ATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
18610248 CGACTCGTTTTATATTTTTCATGATTTTTCAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTT
260 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * * *
18610313 TTGGAAGTAGTTTTGGCCACAAACTTGGTAGACATGATCCCTGTACTTTTGTTAGCATGCACAAA
325 TTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18610378 AAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
390 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18610443 CAGACACTTTAATTAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTG
455 CAGACACTTTAA-TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18610508 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18610573 ATCATGTGCGCACACCCCCCGCGACCCCCCCGATCGTCGGAACCCCAATGCCACCAGTCAAGTTC
584 ATCATGTGCGCACACCCCCCG-G--CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * **
18610638 TTCGATGATGCTCTGGCGATGGTGCCCCGACGAAGGAAAATGCGGCACCAGCACATGCTTGAGCC
646 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* * * *
18610703 CAGCATGTGCTGCTGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAA---C---T-C--
711 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
18610759 ---C---G--T--A---C--A--CCTAAGTCACCCCACAAAATGAGCGTGCGGGCGCTCAGCCGG
776 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* ** * * * *
18610807 CCAGAGAGAAGAGATGCGCAAGTCGGGGATCGA-CGGGGTCCCCCTCTGCATGCCGCCAATCC
841 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * ** * * *
18610869 TGTTACC-GTAAACCTTAGTTCAGTCCGATCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCC
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCC
* * * * *
18610932 AATCAACG-AA--A-TGA---GCGGGCGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCA
65 AACCGACGAAACGAGCGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
18610990 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
18611055 ATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAACCTTCACATGAAGCTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
18611120 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
18611185 TTAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGGCATGCACAA
325 TTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAA
* *
18611249 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18611314 TCAGACATTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18611379 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
18611444 ATCATGTGCGCACACCCCCCGCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTC
584 ATCATGTGCGCACA-CCCCC-CGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
** * *
18611509 TCCGACGATGCTCCGGTGATGGTGCCCCGACGATGAAAAATGCGGCACCAGCACATGCCCGAGCC
646 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
** * * **
18611574 CAGCATGTGCTGTTGCAACCCTCGGTTCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCTT
711 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
18611639 AGACTAGGAATGAACT-CGTATGCCTAAGTCAACCCAC-AGAACGAGCATGCGGGCGCTCAGTCG
776 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * * ** *
18611702 GCCAGA-GGGTGAGATGGGCAAGCCAGGGAT-TAGCCGGGTCCCCCTCTGCATGCTATCGATGC
840 GCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *** *
18611764 TGCTGCCA-CAACCCTTGGTTTTGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18611828 ACCAACAAAACAAGC---GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGAGATGCGCAA
66 ACCGACGAAACGAGCGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* ** * *
18611890 GCCGTGGAT-GATAAGAAGGTAGGTGGGTTTAGGCACATCTCCATATTTGTGCATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
18611954 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
**
18612019 GACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * ** *
18612084 CGAAAGGATTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTCTTGGCATGCAC-AAA
326 TGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18612148 AAATTCAGCCAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18612213 AGACACTTTAATCGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGAG
456 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * **
18612278 TTCTTGAGGTTTGCTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTGCAT
521 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
18612343 CATGTGCGCACACCCCCCAGCCCCGCCAATCGTCGAAACCCCAATGCCGCCGGTGAGGTTCTTCG
586 CATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
18612408 ACAATGGTCCGACGATGGTGCCCCGACGAAGAAAAATG-AGGCACCAGCACATGCCTGAGCCCAG
650 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCA-GCACCAGCACATGCCCGAGCCCAG
* * * *
18612472 CATGTGCTGCCGCATCCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTATA
714 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * ** *
18612537 CTAGGAATGATCTCCGTATGCCTAAGTCAACTCACGGAACGAGCGTGCGGATGCTTAGCCGGCCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * ** * * *
18612602 GAGGGGCGGGATGCACAAGCCAGGGATCGAAAGGGTCCCCCTCAGCATGTTGCCGATCC
844 GAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * **
18612661 TGCTACC-CCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* **
18612725 ACCGACGAAACGAGCGGGTGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATG
66 ACCGACGAAACGAGC--G-AGG-GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * * *
18612790 CACAAGCCGTGGGTCGATAGGGTGGTAGGTGGGTTT-GGCACATCTCCATATTTGTGCGTGCCAA
126 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
18612854 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTCCATGGA
191 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
18612919 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGAGATTTTTTAAAAT
256 AAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
** * * *
18612984 TTTTTCAGAAGGATTTTTAGCCCCTAA-TATGGTAGACGTGATCCTTGTATTTTTCTTGGCATGC
321 TTTTTTGGAAGGATTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
18613048 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCC
385 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
18613113 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGT
450 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * *
18613178 TGTGAGTTCTTGAGGTTTGATGAGGGATATGCGGCCAATATAAGGCCCACGTACCAGCACCCATC
515 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
18613243 GCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATC-ACTGGAACCCCAATACCGCCGATCAG
580 GCACATCATGTGCGCACACCCCC-CGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAG
* ** * * * *
18613307 GTTCTTCGGTGATGCTCCGACGATGGT-CCCCAGGCAAAGAAAAATGCAGCACCAGCACCTGCTC
642 GTTCTCCGACGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCAGCACCAGCACATGCCC
*
18613371 GAGCCCAGCATGTGCTACCGCAA----C---CC--T-CGATC----A----G---G---TCCG-A
706 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
18613411 T-CTTAGACTGAGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTTA
771 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** *
18613475 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAAAGGGTCCCCCT-TAGCGTGTTGCCGA
836 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCT-GCGTGCTGCCGA
18613539 TCC
900 TCC
* * * * **
18613542 TACTACC-GCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18613606 ACCGATGAAATGAGC---GGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
66 ACCGACGAAACGAGCGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
18613668 GCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
18613733 TTTTTATGGTTTATAAATTCATACAACGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18613798 AACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGTATTTCTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
18613863 TGGAAGGAGTTTTGACCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
326 TGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18613928 AAATGCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
** *
18613993 AGACACTTTAATGGCTTTTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAG
456 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18614058 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATGGCACAT
521 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * * * *
18614123 CATGTGCGCACACCCCCCCGGCCTACCCGATCACCGGAACCACAATACCGTCGATCAGGTTCTCC
586 CATGTGCGCACA-CCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
18614188 TG-CGATGCTCCGATGATGGTGCCCCAACGAGGAAAAATGCAGCCCCAACACATGCTCGAGCCCA
649 -GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA
* * * *
18614252 ACATGTGCTGCCGTAACCCTCGAT-CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
713 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * **
18614316 ACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGTTGGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
18614381 AGAGGGGCGGGATGCGTAAATCGGGGATCGATCGGGTACCCCTCTGCGTGCTCCCGATCC
843 AGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
18614441 TGCTGCCA-CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18614505 ACCGACGAAACGAGC-AGGCGGGTGGGAGGACGGGCACAACGTCGGCCAGAGAGACGGGATGCAC
66 ACCGACGAAACGAGCGA-G-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
18614569 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
129 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
18614634 TATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * **
18614699 ATGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTT
259 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
** * * **
18614764 TTCAGAAGGAGTTTTGGCCTCAAACTTGGTAGATTTGATCCTTGTATTTTTGTTAGG-ATGCA-A
324 TTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACA
* *
18614827 AAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCAT
388 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18614892 TTCAGAAACTTTAATGGCTA-TTGCAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
453 TTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18614956 TGACTTCTCGAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACTCAACGC
517 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
18615021 ACATTATGTGCGTACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATACCGTCGATCAGGTTCT
582 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
18615086 ----C--TG----G-CGATGGTGCCCCGGCGAAAAAAAATGCAGCACCAACACATGCTCGAGCCC
647 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
* * * *
18615140 AACATGTGCTGCCGTAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCTTATGCTTA
712 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
18615205 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTAAGCCGGC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * *
18615270 TAGAGGGGCGGGATGCACAAATCGAGGATTGGTCGGGTACCCCTCTGCGTGCTGCCGATCC
842 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
18615331 TGCTGCCA-CAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * *
18615395 ACCGACGAAACGAGTGGGCGGGCGGGAGGATGGGCACAACGCCGGCCAGAGAGACGGGATGCACA
66 ACCGACGAAACGAGCGAG-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
18615460 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCG-AGTGCCAATGC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGC
* *
18615524 CATTTTTATGGCTTGTAAATTCATACACTCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18615589 ACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
259 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
*** * * ** ** * *
18615654 TTCAAAAGGAGTTTTGGCCTCAAACTTCATAGATTTGATCCTTGTATTTTTGTTAGCATACACAA
324 TTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
18615719 AAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
18615784 TCAGACTCTTTAATGGCTATTGCCAGCAAACCTGTAAAATCTCAACTTCTCTTTAAGGGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18615849 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
18615914 ATTATGTGCGTACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATACCGTCGATCAGGTTCT-
584 ATCATGTGCGCACACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
18615978 ---C-A-G----G-CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCTCGAGCCCA
648 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA
* * * * *
18616033 ACATGTGC-GCCGTAACCCCCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
713 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * ** **
18616097 ACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTACGGGGCGCTAAGTTGAT
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCAGCCGGC
* *
18616162 CAGAGGGGCGGGATGCGCAAATCGGGGATCGGAT-GGGTACCCCTCTGCGTGCTGCCGATCC
842 CAGAGGGGCGGGATGCGCAAGTCGGGGATC-GATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
18616223 TCCTTCCA-CAACCCTTGGTCCGTTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18616287 ACCGACG-AA--A-CGA---GTGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGAAGCGTAA
66 ACCGACGAAACGAGCGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
18616345 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
18616410 ATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAT
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
18616475 GACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATCTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
18616540 TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCCCAAAA
326 TGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18616605 TAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTAAAAAAAGTG-CCCTCATTT
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-CATTT
* * *
18616669 CGGACACATTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
18616734 GTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCATA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** * * * * * *
18616799 TCATGTGCGCACACCCCCTGACCCCCCCGATCACCGAAACCCCAAAGTCACCAGTCAGGTTCTCT
585 TCATGTGCGCACACCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** * ** *
18616864 GATGATGCTCCGGTGATGGT-ACCCGGTGAAGAAAAATAC-GACACCAGCACATGCCCGAGCCCA
649 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCA
* * * * * *
18616927 GCATGTGCTACCGCAACCTTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCAGTATGCTTAG
713 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
18616992 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTTAGCCGGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
18617057 AGAGGGGTGGGTTG-GACAAGTCGGGGATCGA-CGGGTCCCCCTCTACGTGCTACCGATCC
843 AGAGGGGCGGGATGCG-CAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * * **
18617116 TGCTATC-GCAACCCTCGATCCGGGCCGATCTTAGACTAGGAATGAACTCTATATGCCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
18617180 ACCGACGAAACGAGCGGGTGGGCGAGTGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGTGGA
66 ACCGACGAAACGAGCGAG-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * * *
18617245 AGCCATGGATGCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTTATAGTTCTGCATGCTATTGC
130 AGCCGTGGAT-CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
18617310 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18617375 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTT
259 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * * *
18617440 TTCGGATGGATTTTTGGCCCCAAACTTCGTAGACGTGATCTTTGCATTTTTTTTGGCATGCACAA
324 TTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
18617505 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGCCTTTTTGTGACCATTTGAAAAAAGTGTCCCCA
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAG--ATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
18617570 -TCCAGACACTTTAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTG
452 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18617633 TGAGTTCTCGAGATTCGATAAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGC
517 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
18617698 ACATCAAGTGCGCACACCACCTCGG-CCCCCTATCGCCGGAACCCTAATGCCGCCGGTTAGGTTC
582 ACATCATGTGCGCACACC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
18617762 TCCGACGATGCTTCGACGCTGGTGCCCCGACGAAGAAAAATGC-GACACCAGCACATTCTCC-AG
646 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGC-CCGAG
* * *
18617825 CCCAGCATGTGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGC
709 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18617890 TTAGACTGGGAATGAACTCCATATGCCTAAGTTAACCCATGAAATGAGCGT----GCG-T-----
774 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
18617945 --CC-------C-GG--G-G--A-TC--GG--C--T-GGGTCCCCCTATGCGTGTTGCCAATCC
839 GGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
18617986 TGCTACC-GCAACCATCGATCCGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18618050 ACTGACAAAATGAGC-AGGCGGGTGGGCGGGCGGGCACTACGCAGGCTAGAGAGACGGGATGCGC
66 ACCGACGAAACGAGCGA-G-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * *
18618114 AAGCCGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTAATATTTCTACGTGCCAATTC
129 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
18618179 CATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18618244 ACAACTCGTTTTCTATTTTTCAAGATTTTTAAAACTTTTTATGGTTCCGGATTTTTTAAAATTTT
259 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * * *
18618309 TTTGGAAGGATTTTTTGCCCCAAACTTGGAAGATGAGATCCTTGTATTTATATTGGCATGCACAA
324 TTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
18618374 AAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18618439 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18618504 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18618569 ATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGTCGGAACCCTAATGCCGTCGGTCAAGTTCT
584 ATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* ** * **
18618634 CTGACGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
647 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
* * * * * * *
18618699 AGCATGTGCTGCCGTAACCCTCAGTCTGATTCGATCTTAGATTGGGAATGAACTCTGTATGCTTA
712 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * * *
18618764 CACTGGGAATGAACTCCGTATGCCTAAGTGAACCGACGAAATGAGCATGCGGGTGCTCAGCTGGC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * *
18618829 CAGAGGGGCGGGATGAGCAAGTCGGGGATC-AGCCGAGTCCCCCTTTGCGTGCTGCCAATCC
842 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * ** * * *
18618890 TACTGCC--CTAACCCTTGGTTTC-ATCTGATCTTAGACTAGGAATGAACTCAGTATGCCTAAGT
1 TGCTGCCAGC-AACCCTCGG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
18618952 CAACC
64 CAACC
18618957 CATAAAACGA
Statistics
Matches: 9418, Mismatches: 1102, Indels: 468
0.86 0.10 0.04
Matches are distributed among these distances:
862 66 0.01
863 2 0.00
865 1 0.00
866 2 0.00
867 30 0.00
868 27 0.00
869 367 0.04
870 148 0.02
871 444 0.05
872 350 0.04
873 77 0.01
874 756 0.08
875 214 0.02
876 5 0.00
877 7 0.00
878 3 0.00
879 108 0.01
880 134 0.01
881 196 0.02
882 6 0.00
883 16 0.00
884 489 0.05
885 1 0.00
886 2 0.00
887 2 0.00
888 2 0.00
889 74 0.01
890 517 0.05
891 307 0.03
892 236 0.03
893 91 0.01
894 86 0.01
895 361 0.04
896 99 0.01
897 320 0.03
898 229 0.02
899 236 0.03
900 44 0.00
901 757 0.08
902 758 0.08
903 371 0.04
904 155 0.02
905 416 0.04
906 806 0.09
907 95 0.01
908 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
TGCTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
TGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:18611648 original size:26 final size:25
Alignment explanation
Indices: 18611610--18611661 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
18611600 TCGATTTGAT
*
18611610 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACT-CGTATG
18611636 CTTAGACTAGGAATGAACTCGTATG
1 CTTAGACTAGGAATGAACTCGTATG
18611661 C
1 C
18611662 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCGTATG
Found at i:18612534 original size:26 final size:26
Alignment explanation
Indices: 18612505--18612557 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18612495 CTGGTCCGAT
* *
18612505 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18612531 CTTATACTAGGAATGATCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18612557 C
1 C
18612558 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18614246 original size:874 final size:871
Alignment explanation
Indices: 18607320--18618760 Score: 12804
Period size: 874 Copynumber: 12.9 Consensus size: 871
18607310 GCCCAGCATG
* * ** *
18607320 TGCTGCCGTAACCCTCGGTCTAATCCAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATC-CGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ***
18607385 CCGACGAAACGA--------GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATAAACAAGCCG
65 CCGACGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
18607442 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATA-TTCTGCCTGCCCAATGCCATTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG-CCAATGCCATTT
18607506 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
194 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
18607571 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGGTCAGGATTTTTTAAAAATTTTTCGG
259 TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGG
* * *
18607636 AAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAA
323 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
18607701 ATCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * * *
18607766 GACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCGAATACTCTTTAAGGGGATGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
18607831 TCGAGCTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * **
18607896 GTGCGCACA--CCCCCGGCCCCCCGATCGCCGAAACCCCAATGCTGCCGGTCAAGTTCTCCGGTG
583 GTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
** * * * *
18607959 ATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCGGCACATGCCCGATCCCAGCATG
648 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
* * *
18608024 TGCTGCCGCAAACCTCGGTCTGGTCCGATCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAA
713 TGCTGCCGCAACCCTCGATCAGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
18608088 CCCACGAAATGAGCGTGCGGGCGCTTAGCTGGCTAGAGGGGAGGGATGCGTATA-CCGGGGATCG
778 CCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCA-AGCCGGGGATCG
** * * *
18608152 GTCGGGTCCCCATCTGTGTGCTGCTGATCC
842 AACGGGTCCCCCTCTGCGTGCTGCCGATCC
18608182 TGCTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18608247 CCGACGAAACGAGCGTGTGGCCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
65 CCGACGAAACGAGC--G-GG-TGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
18608312 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
126 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
18608377 TTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGAT
191 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18608442 AACTCGTTATCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
256 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGG-TTCGGATTTTTTAAAATTTTTT
* * * *
18608507 CAGAAGG-GTTTTTGGTCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAA
320 CGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAA
* ** * * * *
18608571 AAAAATTCAGCTAAAAACTTGAAGCATACAAGATTTTGCGACCAGTTGAAAAAACTATCCCCATT
383 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18608636 TGAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
448 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18608701 AGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCAC
513 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * * *
18608766 ATCATGTGTGAACACCCCCCGCTGGCTCCCTGATCGTCAGAACCTCAATGCCGCCGGTCAAGTTC
578 ATCATGTGCGCACACCCCCC-C-GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * ** * *
18608831 TCCGGCTATGCTCCAACGATGGTGCCCCGATGAAAAAAAATGTGGCACCAACACATGCCCAAGCC
641 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* * * *
18608896 CAGAATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTTTGCTG
706 CAGCATGTGCTGCCGCAACCCTCGATCAGGTCCGATCTTAGACT--G-A-GAA----------TG
* * * * * *
18608961 AGACTGGGAATGAACTTTGTATGCCTAAATTAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA
757 A-AC------T---C--CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGG
* ** * *
18609026 CCAGAGTGAAGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
810 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAACGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * *
18609088 TGGTGCCATAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** *
18609153 GCGATGAAACAAG-GGAGAGGGCGGGCAGGTGGGCACTACGCCTACCAGAGAGACGGGATGCACA
65 CCGACGAAACGAGCGG-GTGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
18609217 AGCCGTGGATCGATAGGGTGGTAGCTGTGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
125 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18609282 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGA
190 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
18609347 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTTAGGATTTTTTAAAATTTTT
255 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGG-TTCGGATTTTTTAAAATTTTT
* * * * ** *
18609412 TTGGAAAGATTTTTGGCCCCAAAATTGGTAGATATGATCCTTGTATTTTTGTTGGCATGCATAAA
319 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18609477 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
384 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18609542 CAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
449 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
18609607 GTTCTCTAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
514 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** *
18609671 TCATGTGCGCACA-CCCCCCATCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
579 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* *
18609735 GACGATGCTCCGACGATGGTGCCCCGGCGAAGATAAATGCAGCACCAGCACATGCCCGAGCCCAG
644 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
*
18609800 CATGTGCTGTCC-CAACCCTTGGTCCGGTCCGATCTGACACTAGGAATGAACTCCGTATGCTGAG
709 CATGTGCTG-CCGCAA--C-----CC--T-CGA--T----C-A-G---G---TCCG-AT-CTTAG
* * * * *
18609864 ACT-AGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAACCGAC
747 ACTGA-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGC
* * * ** * * * * * *
18609928 CA-ATGGAGCGAGATGCACAAGTTGGGGACCGATCGAGTCCCCCTTTACGTTCTGCCGATCC
811 CAGA-GGGGCGGGATGCGCAAGCCGGGGATCGAACGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * *
18609989 T-CTGGCAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAAGCCTAAGCCA
1 TGCT-GCCGCAACCCTCGATCC-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18610053 ACTGACGAAATGAGCGAGAGGGCTGGTGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCA
64 ACCGACGAAACGAGCG-G-GTG--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
** * *
18610118 AGCTATGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
125 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
18610183 ATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGA
190 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
18610248 CGACTCGTTTTATATTTTTCATGATTTTTCAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTT
255 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTT
* * * * * * *
18610313 TTGGAAGTAGTTTTGGCCACAAACTTGGTAGACATGATCCCTGTACTTTTGTTAGCATGCACAAA
319 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18610378 AAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
384 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18610443 CAGACACTTTAATTAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTG
449 CAGACACTTTAA-TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18610508 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
513 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * *
18610573 ATCATGTGCGCACACCCCCCGCGACCCCCCCGATCGTCGGAACCCCAATGCCACCAGTCAAGTTC
578 ATCATGTGCGCACACCCCCC-CG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * * **
18610638 TTCGATGATGCTCTGGCGATGGTGCCCCGACGAAGGAAAATGCGGCACCAGCACATGCTTGAGCC
641 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* * * * * **
18610703 CAGCATGTGCTGCTGTAACCCTC-AGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTACACC
706 CAGCATGTGCTGCCGCAACCCTCGA-TCAGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCC
* * * * * ** * *
18610767 TAAGTCACCCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGAAGAGATGCGCAAGTCG
770 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * *
18610832 GGGATCG-ACGGGGTCCCCCTCTGCATGCCGCCAATCC
835 GGGATCGAAC-GGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * * *
18610869 TGTTACCGTAAACCTTAGTTCAGTCCGATCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCG-CAACCCTCGATCCGTCCAATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18610933 ATCAACGAAATGAGC----GGGCGGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCC
64 ACCGACGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
18610994 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
129 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
18611059 TTATGGCTTGTAAATTCATAAAATGGTCCCTTAAACCTTCACATGAAGCTTCATGGCAAGACGAC
194 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * **
18611124 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAG
259 TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGG
*
18611189 AAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGGCATGCACAAAAAA
323 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAA
* *
18611253 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAG
387 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18611318 ACATTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTT
452 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18611383 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCA
517 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
18611448 TGTGCGCACACCCCCCGCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCG
582 TGTGCGCACACCCCCC-CGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
** * *
18611513 ACGATGCTCCGGTGATGGTGCCCCGACGATGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
645 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGC
**
18611578 ATGTGCTGTTGCAACCCTCGGTTCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
710 ATGTGCTGCCGCAA-CC-C---TC-----GATC----A----G---G---TCCG-AT-CTTAGAC
* * *
18611643 T-AGGAATGAACT-CGTATGCCTAAGTCAACCCAC-AGAACGAGCATGCGGGCGCTCAGTCGGCC
749 TGA-GAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTTAGCCGGCC
* * * * * * * ** *
18611705 AGA-GGGTGAGATGGGCAAGCCAGGGAT-TAGCCGGGTCCCCCTCTGCATGCTATCGATGC
812 AGAGGGGCGGGATGCGCAAGCCGGGGATCGA-ACGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** *
18611764 TGCTGCCACAACCCTTGGTTTTGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
1 TGCTGCCGCAACCC-TCGATCCGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
18611829 CCAACAAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGAGATGCGCAAGCCG
65 CCGACGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* ** * *
18611894 TGGAT-GATAAGAAGGTAGGTGGGTTTAGGCACATCTCCATATTTGTGCATGCCAATGCCATTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
18611958 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACT
195 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** *
18612023 CGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
260 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGA
* ** *
18612088 AGGATTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTCTTGGCATGCAC-AAAAAAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
18612152 TCAGCCAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
18612217 ACTTTAATCGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * **
18612282 TGAGGTTTGCTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTGCATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * *
18612347 TGCGCACA-CCCCCCAGCCCCGCCAATCGTCGAAACCCCAATGCCGCCGGTGAGGTTCTTCGACA
584 TGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* *
18612411 ATGGTCCGACGATGGTGCCCCGACGAAGAAAAATG-AGGCACCAGCACATGCCTGAGCCCAGCAT
648 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCA-GCACCAGCACATGCCCGAGCCCAGCAT
* * *
18612475 GTGCTGCCGCATCCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTATACTA
712 GTGCTGCCGCAACCCTCGATCAGGTCCGATC-T----T----A-G-A--CTG-A-G---A-A-T-
* * **
18612540 GGAATGATCTCCGTATGCCTAAGTCAACTCACGGAACGAGCGTGCGGATGCTTAGCCGGCCAGAG
756 -G-A--A-CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAG
* * * * * *
18612605 GGGCGGGATGCACAAGCCAGGGATCGAAAGGGTCCCCCTCAGCATGTTGCCGATCC
816 GGGCGGGATGCGCAAGCCGGGGATCGAACGGGTCCCCCTCTGCGTGCTGCCGATCC
* * **
18612661 TGCTACCCCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCC-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
**
18612726 CCGACGAAACGAGCGGGTGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGC
65 CCGACGAAACGAGCGGGT--------GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * * *
18612791 ACAAGCCGTGGGTCGATAGGGTGGTAGGTGGGTTT-GGCACATCTCCATATTTGTGCGTGCCAAT
122 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
18612855 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTCCATGGAA
187 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
18612920 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGAGATTTTTTAAAATT
252 AGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCG-GATTTTTTAAAATT
* * * * *
18612985 TTTTCAGAAGGATTTTTAGCCCCTAA-TATGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA
316 TTTTCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
18613049 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCC
380 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
18613114 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTT
445 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * * *
18613179 GTGAGTTCTTGAGGTTTGATGAGGGATATGCGGCCAATATAAGGCCCACGTACCAGCACCCATCG
510 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
18613244 CACATCATGTGCGCACACCCCCTCGGCCCCCCCGATC-ACTGGAACCCCAATACCGCCGATCAGG
575 CACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGG
* ** * * * *
18613308 TTCTTCGGTGATGCTCCGACGATGGT-CCCCAGGCAAAGAAAAATGCAGCACCAGCACCTGCTCG
638 TTCTCCGACGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCAGCACCAGCACATGCCCG
* *
18613372 AGCCCAGCATGTGCTACCGCAACCCTCGATCAGGTCCGATCTTAGACTGAGAATGAACTCCGTAA
702 AGCCCAGCATGTGCTGCCGCAACCCTCGATCAGGTCCGATCTTAGACTGAGAATGAACTCCGTAT
*
18613437 GCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAG
767 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAG
* *
18613502 CCGGGGATCGAAAGGGTCCCCCT-TAGCGTGTTGCCGATCC
832 CCGGGGATCGAACGGGTCCCCCTCT-GCGTGCTGCCGATCC
* * **
18613542 TACTACCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCC-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18613607 CCGATGAAATGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
65 CCGACGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
18613672 TGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * * *
18613737 TATGGTTTATAAATTCATACAACGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACT
195 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
18613802 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGTATTTCTTAAAATTTTTTTGGA
260 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGG-ATTTTTTAAAATTTTTTCGGA
* *
18613867 AGGAGTTTTGACCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
18613932 GCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
** *
18613997 ACTTTAATGGCTTTTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
18614062 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATGGCACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * * *
18614127 TGCGCACACCCCCCCGGCCTACCCGATCACCGGAACCACAATACCGTCGATCAGGTTCTCCTG-C
584 TGCGCACACCCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GAC
* * * * * * *
18614191 GATGCTCCGATGATGGTGCCCCAACGAGGAAAAATGCAGCCCCAACACATGCTCGAGCCCAACAT
647 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAT
*
18614256 GTGCTGCCGTAACCCTCGATC-GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTA
712 GTGCTGCCGCAACCCTCGATCAGGTCCGATC-T----T----A-G--------A--C-T-G---A
* **
18614320 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGTTGGCCAGAG
752 -GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAG
* ** * * *
18614385 GGGCGGGATGCGTAAATCGGGGATCGATCGGGTACCCCTCTGCGTGCTCCCGATCC
816 GGGCGGGATGCGCAAGCCGGGGATCGAACGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
18614441 TGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCC-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18614506 CCGACGAAACGAGCAGGCGGGTGGGAGGACGGGCACAACGTCGGCCAGAGAGACGGGATGCACAA
65 CCGACGAAAC--G-A-GCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
18614571 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCTA
126 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
18614636 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
191 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18614701 GACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTT
256 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTT
* * **
18614766 CAGAAGGAGTTTTGGCCTCAAACTTGGTAGATTTGATCCTTGTATTTTTGTTAGG-ATGCA-AAA
320 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAA
* *
18614829 AAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTT
384 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18614894 CAGAAACTTTAATGGCTA-TTGCAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
449 CAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18614958 ACTTCTCGAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACTCAACGCAC
513 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18615023 ATTATGTGCGTACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATACCGTCGATCAGGTTCT-
578 ATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * *
18615086 ---C--TG----G-CGATGGTGCCCCGGCGAAAAAAAATGCAGCACCAACACATGCTCGAGCCCA
643 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA
* * *
18615141 ACATGTGCTGCCGTAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAG
708 GCATGTGCTGCCGCAACCCTCGATCAGGTCCGATC-T----T----A-G--------A--C-T-G
* * * *
18615206 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTAAGCCGGCT
751 A----GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCC
* ** * * ** *
18615271 AGAGGGGCGGGATGCACAAATCGAGGATTGGTCGGGTACCCCTCTGCGTGCTGCCGATCC
812 AGAGGGGCGGGATGCGCAAGCCGGGGATCGAACGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
18615331 TGCTGCCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18615396 CCGACGAAACGAGTGGGCGGGCGGGAGGATGGGCACAACGCCGGCCAGAGAGACGGGATGCACAA
65 CCGACGAAACGAGCGGGTGGGC--G-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
18615461 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCG-AGTGCCAATGCC
126 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCC
* *
18615525 ATTTTTATGGCTTGTAAATTCATACACTCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
190 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
18615590 CGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
255 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTT
** * ** ** * *
18615655 TCAAAAGGAGTTTTGGCCTCAAACTTCATAGATTTGATCCTTGTATTTTTGTTAGCATACACAAA
319 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18615720 AAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTT
384 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
18615785 CAGACTCTTTAATGGCTATTGCCAGCAAACCTGTAAAATCTCAACTTCTCTTTAAGGGGGTGTGA
449 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
18615850 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACA
514 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
18615915 TTATGTGCGTACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATACCGTCGATCAGGTTCT--
579 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * *
18615978 --C-A-G----G-CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCTCGAGCCCAA
644 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
* *
18616034 CATGTGC-GCCGTAACCCCCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
709 CATGTGCTGCCGCAA---CC---C---T-CGATC----A----G---G---TCC-GAT-CTTAGA
* * * * ** **
18616098 CTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTACGGGGCGCTAAGTTGATC
748 CTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTTAGCCGGCC
** * * *
18616163 AGAGGGGCGGGATGCGCAAATCGGGGATCGGATGGGTACCCCTCTGCGTGCTGCCGATCC
812 AGAGGGGCGGGATGCGCAAGCCGGGGATCGAACGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
18616223 TCCTTCCACAACCCTTGGTCCGTTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18616288 CCGACGAAACGA----GTGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGAAGCGTAAGCCG
65 CCGACGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
18616349 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCAATGCCAATTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
18616414 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACT
195 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * * *
18616479 CATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATCTTTTAAAATTTTTTTGAA
260 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGA
* * * *
18616544 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCCCAAAATAAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
18616609 TCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTAAAAAAAGTG-CCCTCATTTCGGA
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-CATTTCAGA
* *
18616673 CACATTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
18616738 TCAAGGTTTGATGAGAGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCATATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * ** * * * ** * * *
18616803 GTGCGCACA-CCCCCTGACCCCCCCGATCACCGAAACCCCAAAGTCACCAGTCAGGTTCTCTGAT
583 GTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
** * ** *
18616867 GATGCTCCGGTGATGGT-ACCCGGTGAAGAAAAATAC-GACACCAGCACATGCCCGAGCCCAGCA
647 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCA
*
18616930 TGTGCTACCGCAACCTTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACT
711 TGTGCTGCCGCAA----C---CC--TC-GATC----A---GG--T---C-C-G-AT-CTTAGACT
* * *
18616995 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTTAGCCGGCCAGA
750 GAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGA
* * * * *
18617060 GGGGTGGGTTG-GACAAGTCGGGGATCG-ACGGGTCCCCCTCTACGTGCTACCGATCC
815 GGGGCGGGATGCG-CAAGCCGGGGATCGAACGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * **
18617116 TGCTATCGCAACCCTCGATCCGGGCCGATCTTAGACTAGGAATGAACTCTATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCC-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18617181 CCGACGAAACGAGCGGGTGGGCGAGTGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGTGGAA
65 CCGACGAAACGAGCGGGTGGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
18617246 GCCATGGATGCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTTATAGTTCTGCATGCTATTGCC
126 GCCGTGGAT-CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18617311 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGA
190 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
18617376 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
255 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTT
* * * * * *
18617441 TCGGATGGATTTTTGGCCCCAAACTTCGTAGACGTGATCTTTGCATTTTTTTTGGCATGCACAAA
319 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18617506 AAAATTCAGCTAAAAACTCGAAGTGTACAAGCCTTTTTGTGACCATTTGAAAAAAGTGTCCCCA-
384 AAAATTCAGCTAAAAACTCGAAGTGTACAAG--ATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18617570 TCCAGACACTTTAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGT
447 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
18617634 GAGTTCTCGAGATTCGATAAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCA
512 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * * * *
18617699 CATCAAGTGCGCACACCACCTCGG-CCCCCTATCGCCGGAACCCTAATGCCGCCGGTTAGGTTCT
577 CATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
18617763 CCGACGATGCTTCGACGCTGGTGCCCCGACGAAGAAAAATGC-GACACCAGCACATTCTCC-AGC
642 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGC-CCGAGC
* * * * * *
18617826 CCAGCATGTGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATG-C
705 CCAGCATGTGCTGCCGCAACCCTCGATCAGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCC
* * ***** * * * ** **** * *** * *
18617890 TTAGACTGGGAATGAACTCCA-TATGCCTAAG-TTA-AC--CCATGAAATGAGCG-TGCGTC---
770 TAAGTCAACCCACGAA-ACGAGCGTGCGGGCGCTTAGCCGGCCA-GAGGGGCGGGATGCG-CAAG
* * * *
18617946 CCGGGGATCG-GCTGGGTCCCCCTATGCGTGTTGCCAATCC
832 CCGGGGATCGAAC-GGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
18617986 TGCTACCGCAACCATCGATCCGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18618051 CTGACAAAATGAGCAGGCGGGTGGGCGGGCGGGCACTACGCAGGCTAGAGAGACGGGATGCGCAA
65 CCGACGAAA--CG-A-GCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
18618116 GCCGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTAATATTTCTACGTGCCAATTCCA
126 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18618181 TTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGAC
191 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18618246 AACTCGTTTTCTATTTTTCAAGATTTTTAAAACTTTTTATGGTTCCGGATTTTTTAAAATTTTTT
256 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTT-CGGATTTTTTAAAATTTTTT
* * * * * * * *
18618311 TGGAAGGATTTTTTGCCCCAAACTTGGAAGATGAGATCCTTGTATTTATATTGGCATGCACAAAA
320 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18618376 AATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
385 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18618441 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTGAG
450 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18618506 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACAT
515 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18618571 CATGTGCGCACACCCCCCCGGCCCCCCCAATCGTCGGAACCCTAATGCCGTCGGTCAAGTTCTCT
580 CATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
** * **
18618636 GACGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
644 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
* * * * * * *
18618701 CATGTGCTGCCGTAACCCTC-AGTCTGATTCGATCTTAGATTGGGAATGAACTCTGTATGC
709 CATGTGCTGCCGCAACCCTCGA-TCAGGTCCGATCTTAGACTGAGAATGAACTCCGTATGC
18618761 TTACACTGGG
Statistics
Matches: 9185, Mismatches: 1057, Indels: 664
0.84 0.10 0.06
Matches are distributed among these distances:
862 71 0.01
867 30 0.00
868 27 0.00
869 380 0.04
870 139 0.02
871 384 0.04
872 351 0.04
873 89 0.01
874 781 0.09
875 219 0.02
876 28 0.00
877 7 0.00
878 4 0.00
879 131 0.01
880 152 0.02
881 198 0.02
882 9 0.00
883 11 0.00
884 482 0.05
885 8 0.00
886 8 0.00
887 4 0.00
888 10 0.00
889 77 0.01
890 500 0.05
891 247 0.03
892 252 0.03
893 97 0.01
894 103 0.01
895 296 0.03
896 110 0.01
897 333 0.04
898 225 0.02
899 223 0.02
900 41 0.00
901 691 0.08
902 684 0.07
903 369 0.04
904 87 0.01
905 413 0.04
906 751 0.08
907 117 0.01
908 8 0.00
909 1 0.00
910 1 0.00
911 2 0.00
912 4 0.00
913 4 0.00
915 3 0.00
916 3 0.00
917 2 0.00
919 1 0.00
922 1 0.00
923 4 0.00
925 3 0.00
926 2 0.00
927 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
TGCTGCCGCAACCCTCGATCCGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGATCAGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAACG
GGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:18614323 original size:26 final size:26
Alignment explanation
Indices: 18614285--18614337 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18614275 TCGGTCCGAT
*
18614285 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18614311 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18614337 C
1 C
18614338 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18615211 original size:26 final size:26
Alignment explanation
Indices: 18615175--18615227 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18615165 CAGGTCCGAT
*
18615175 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18615201 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18615227 C
1 C
18615228 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18616102 original size:26 final size:26
Alignment explanation
Indices: 18616066--18616118 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18616056 CTGGTCCGAT
18616066 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18616092 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18616118 C
1 C
18616119 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18616990 original size:26 final size:26
Alignment explanation
Indices: 18616961--18617013 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18616951 CCAGTCTGAT
18616961 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
18616987 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
18617013 C
1 C
18617014 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:18617514 original size:902 final size:896
Alignment explanation
Indices: 18610739--18618956 Score: 9748
Period size: 902 Copynumber: 9.2 Consensus size: 896
18610729 CCGATCCGAT
** * * * *
18610739 CTTAGACTGGGAATGAACTCCGTACACCTAAGTCACCCCACAAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTAAGC
* ** * * * *
18610804 CGGCCAGAGAGAAGAGATGCG-CAAGTCGGGGATCGACGGGGTCCCCCTCTGCATGCCGCCAATC
65 CGGCCAGAGGGGCGGGATG-GACAAGTCGGGGATCGAC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
18610868 CTGTTACCGTA-AACCTTAG-TTCAGTCCGATCTTAGA-TAGGGAATGAACTCCGTATGCCTAAG
128 CTGCTACC--ACAACCCTCGATCCGGTCCAATCTTAGACT-GGGAATGAACTCCGTATGCCTAAG
* * * * *
18610930 CCAATCAACGAAATGA----GCGGGC---GGGCGGGCACTACGCCAGCCAGAGAGGCGGGATGCG
190 CCAACCGACGAAACGAGCGGGCGGGCGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
18610988 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* * * *
18611053 CCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAACCTTCACATGAAGCTTCATGGCAA
320 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* **
18611118 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
385 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
** * *
18611183 TTTTAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTTGGCATGCACA
450 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
18611248 AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCAT
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18611313 TTCAGACATTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGT
580 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
18611378 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCA
645 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
18611443 CATCATGTGCGCACACCCCCCGCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTT
710 CATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATACCGTC----AGGTT
* * * * *
18611508 CTCCGACGATGCTCCGGTGATGGTGCCCCGACGATGAAAAATGCGGCACCAGCACATGCCCGAGC
769 CTCTGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGC
* ** * * * ** *
18611573 CCAGCATGTGCTGTTGCAACCCTCGGTTC-GATTTGATCTTAGACTGGGAATGAACTCCGTATG
834 CCAACATGTGCTGCCGTAACCCTCGATCCAG-TCCGATCTTAGACTGGGAATGAACTCAGTATG
* * *
18611636 CTTAGACTAGGAATGAACT-CGTATGCCTAAGTCAACCCAC-AGAACGAGCATGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGC-GGCGCTAAG
* * * * * * * * * ** *
18611699 TCGGCCAGA-GGGTGAGATGGGCAAGCCAGGGATTAGCCGGGTCCCCCTCTGCATGCTATCGATG
64 CCGGCCAGAGGGGCGGGATGGACAAGTCGGGGA-TCGACGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *** *
18611763 CTGCTGCCACAACCCTTGGTTTTGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCA
128 CTGCTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18611828 ACCAACAAAACAAGCGGGCGGGC---GGGCGGGCACTACGCCGGCCAGAGAGATGAGATGCGCAA
193 ACCGACGAAACGAGCGGGCGGGCGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* ** * * *
18611890 GCCGTGGAT-GATAAGAAGGTAGGTGGGTTTAGGCACATCTCCATATTTGTGCATGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
18611954 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
18612019 GACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * ** *
18612084 CGAAAGGATTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTCTTGGCATGCAC-AAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
18612148 AAATTCAGCCAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18612213 AGACACTTTAATCGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * **
18612278 TTCTTGAGGTTTGCTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTGCAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
18612343 CATGTGCGCACACCCCCCAGCCCCGCCAATCGTCGAAACCCCAATGCCGCCGGTGAGGTTCT-TC
713 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAAT---ACC-GTCAGGTTCTCT-
* * * * *
18612407 GACAATGGTCCGACGATGGTGCCCCGACGAAGAAAAATG-AGGCACCAGCACATGCCTGAGCCCA
773 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCA-GCACCAACACATGCCCGAGCCCA
* * * * ** *
18612471 GCATGTGCTGCCGCATCCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
837 ACATGTGCTGCCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
* * * * * * *
18612531 CTTATACTAGGAATGATCTCCGTATGCCTAAGTCAACTCACGGAACGAGCGTGCGGATGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CGCTAAGC
* * * * * * *
18612596 CGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGAAAGGGTCCCCCTCAGCATGTTGCCGATCC
65 CGGCCAGAGGGGCGGGATGGACAAGTCGGGGATCG-ACGGGTCCCCCTCTGCGTGCTGCCGATCC
* * **
18612661 TGCTACCCCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
129 TGCTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* **
18612726 CCGACGAAACGAGCGGGTGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTGGGATGC
194 CCGACGAAACGAGC----GGGCGGGCGGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * * * *
18612791 ACAAGCCGTGGGTCGATAGGGTGGTAGGTGGGTTT-GGCACATCTCCATATTTGTGCGTGCCAAT
254 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* * *
18612855 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTCCATGGAA
319 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** * *
18612920 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGAGATTTTTTAAAATT
384 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * * *
18612985 TTTTCAGAAGGATTTTTAGCCCCTAA-TATGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA
449 TTTTCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
*
18613049 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCC
513 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
18613114 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTT
578 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * * *
18613179 GTGAGTTCTTGAGGTTTGATGAGGGATATGCGGCCAATATAAGGCCCACGTACCAGCACCCATCG
643 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
18613244 CACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCACTGGAACCCCAATACCGCCGATCAGGT
708 CACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATA---CCG-TCAGGT
** * * * * * *
18613309 TCT-TCGGTGATGCTCCGACGATGGT-CCCCAGGCAAAGAAAAATGCAGCACCAGCACCTGCTCG
768 TCTCT-GACGATGCTCCGGCGATGGTGCCCC-GACGAAGAAAAATGCAGCACCAACACATGCCCG
* * *
18613372 AGCCCAGCATGTGCTACCGCAA----C---CC--T-CGATC----A---GG--T---C-C-G-AT
831 AGCCCAACATGTGCTGCCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCAGTAT
18613412 -
896 G
* * *
18613412 CTTAGACTGAGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CGCTAAGC
* * *
18613477 CGGCCAGAGGGGCGGGATGCG-CAAGCCGGGGATCGAAAGGGTCCCCCT-TAGCGTGTTGCCGAT
65 CGGCCAGAGGGGCGGGATG-GACAAGTCGGGGATCG-ACGGGTCCCCCTCT-GCGTGCTGCCGAT
* * * **
18613540 CCTACTACCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
127 CCTGCTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18613605 AACCGATGAAATGAGCGGGTGGGC---GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
192 AACCGACGAAACGAGCGGGCGGGCGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
18613667 AGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * * *
18613732 ATTTTTATGGTTTATAAATTCATACAACGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
18613797 CAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGTATTTCTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
18613862 TTGGAAGGAGTTTTGACCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
18613927 AAAATGCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
** *
18613992 CAGACACTTTAATGGCTTTTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18614057 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATGGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * *
18614122 TCATGTGCGCACACCCCCCCGGCCTACCCGATCACCGGAACCACAATACCGTCGATCAGGTTCTC
712 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATA-C--CG-TCAGGTTCT-
** * * * *
18614187 CTG-CGATGCTCCGATGATGGTGCCCCAACGAGGAAAAATGCAGCCCCAACACATGCTCGAGCCC
771 CTGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCC
*
18614251 AACATGTGCTGCCGTAACCCTCGAT-CGGTCCGATCTTAGACTGGGAATGAACTCCA-TATG
836 AACATGTGCTGCCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACT-CAGTATG
* *
18614311 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTAAGC
* * *
18614376 TGGCCAGAGGGGCGGGATGCGTA-AA-TCGGGGATCGATCGGGTACCCCTCTGCGTGCTCCCGAT
65 CGGCCAGAGGGGCGGGATG-G-ACAAGTCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
18614439 CCTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGCC
127 CCTGCTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
18614504 AACCGACGAAACGAGCAGGCGGGTGGGAGGACGGGCACAACGTCGGCCAGAGAGACGGGATGCAC
192 AACCGACGAAACGAGCGGGCGGGCGGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
18614569 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
18614634 TATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * **
18614699 ATGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTT
386 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * ** *
18614764 TTCAGAAGGAGTTTTGGCCTCAAACTTGGTAGATTTGATCCTTGTATTTTTGTTAGG-ATGCA-A
451 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTTGGCATGCACA
* *
18614827 AAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCAT
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18614892 TTCAGAAACTTTAATGGCTA-TTGCAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
580 TTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18614956 TGACTTCTCGAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACTCAACGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
18615021 ACATTATGTGCGTACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATACCGTC--G--ATC--
709 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATACCGTCAGGTTCTCTG
* * * * * *
18615079 A-GGTTCTCTGGCGATGGTGCCCCGGCGAAAAAAAATGCAGCACCAACACATGCTCGAGCCCAAC
774 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAAC
* **
18615143 ATGTGCTGCCGTAACCCTCGGT-CAGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
839 ATGTGCTGCCGTAACCCTCGATCCA-GTCCGATCTTAGACTGGGAATGAACTCAGTATG
*
18615201 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CGCTAAGC
* * * * * * *
18615266 CGGCTAGAGGGGCGGGATGCACAAATCGAGGATTGGTCGGGTACCCCTCTGCGTGCTGCCGATCC
65 CGGCCAGAGGGGCGGGATGGACAAGTCGGGGA-TCGACGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
18615331 TGCTGCCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
129 TGCTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * *
18615396 CCGACGAAACGAGTGGGCGGGCGGGAGGATGGGCACAACGCCGGCCAGAGAGACGGGATGCACAA
194 CCGACGAAACGAGCGGGCGGGCGGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18615461 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC--CGAGTGCCAATGC
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC-A-TGCCAATGC
* *
18615524 CATTTTTATGGCTTGTAAATTCATACACTCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
18615589 ACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
386 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
** * ** ** * * *
18615654 TTCAAAAGGAGTTTTGGCCTCAAACTTCATAGATTTGATCCTTGTATTTTTGTTAGCATACACAA
451 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* *
18615719 AAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
18615784 TCAGACTCTTTAATGGCTATTGCCAGCAAACCTGTAAAATCTCAACTTCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18615849 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
18615914 ATTATGTGCGTACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATACCGTC--G--ATC--A-
711 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATACCGTCAGGTTCTCTGAC
* * * *
18615972 GGTTCTCAGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCTCGAGCCCAACAT
776 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAACAT
* * **
18616037 GTGC-GCCGTAACCCCCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCA-TATG
841 GTGCTGCCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACT-CAGTATG
* *
18616092 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTACGGGGCGCTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT--GCGGCGCTAAG
** ** * * *
18616157 TTGATCAGAGGGGCGGGATGCG-CAAATCGGGGATCGGATGGGTACCCCTCTGCGTGCTGCCGAT
64 CCGGCCAGAGGGGCGGGATG-GACAAGTCGGGGATC-GACGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * *
18616221 CCTCCTTCCACAACCCTTGGTCCGTTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
127 CCTGCTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18616286 AACCGACGAAACGA----GTGGGC---GGGCGGGCACTACGCCAGCCAGAGAGACGGGAAGCGTA
192 AACCGACGAAACGAGCGGGCGGGCGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
18616344 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
18616409 AATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** * *
18616474 TGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATCTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
18616539 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCCCAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * *
18616604 ATAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTAAAAAAAGTG-CCCTCATT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-CATT
* * *
18616668 TCGGACACATTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18616733 AGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCAT
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18616798 ATCATGTGCGCACACCCCCTGACCCCCCCGATCACCGAAACCCCAAAGTCACCAGTCAGGTTCTC
711 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC-AA-T-ACC-GTCAGGTTCTC
* * * ** * *
18616863 TGATGATGCTCCGGTGATGGT-ACCCGGTGAAGAAAAATAC-GACACCAGCACATGCCCGAGCCC
772 TGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAACACATGCCCGAGCCC
* * * * *
18616926 AGCATGTGCTACCGCAACCTTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCAGTATG
836 AACATGTGCTGCCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
* *
18616987 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTAAGC
* * * *
18617052 CGGCCAGAGGGGTGGGTTGGACAAGTCGGGGATCGACGGGTCCCCCTCTACGTGCTACCGATCCT
65 CGGCCAGAGGGGCGGGATGGACAAGTCGGGGATCGACGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * **
18617117 GCTATCGCAACCCTCGATCCGGGCCGATCTTAGACTAGGAATGAACTCTATATGCCTAAGCCAAC
130 GCTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
18617182 CGACGAAACGAGCGGGTGGGCGAGTGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGTGGAAG
195 CGACGAAACGAGCGGGCGGGCG-GGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * * * *
18617247 CCATGGATGCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTTATAGTTCTGCATGCTATTGCCA
259 CCGTGGAT-CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
18617312 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
18617377 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
18617442 CGGATGGATTTTTGGCCCCAAACTTCGTAGACGTGATCTTTGCATTTTTTTTGGCATGCACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
*
18617507 AAATTCAGCTAAAAACTCGAAGTGTACAAGCCTTTTTGTGACCATTTGAAAAAAGTGTCCCCA-T
518 AAATTCAGCTAAAAACTCGAAGTGTACAAG--ATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18617571 CCAGACACTTTAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18617635 AGTTCTCGAGATTCGATAAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
18617700 ATCAAGTGCGCACACCACCTCGG--CCCCCTATCGCCGGAACCCTAATGCCGCCGGTTAGGTTCT
711 ATCATGTGCGCACACC-CCCCGGCCCCCCCGATCGCCGGAACCCCAAT---ACC-GTCAGGTTCT
* * * * * *
18617763 CCGACGATGCTTCGACGCTGGTGCCCCGACGAAGAAAAATGC-GACACCAGCACATTCTCC-AGC
771 CTGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAACACATGC-CCGAGC
* ** * * *
18617826 CCAGCATGTGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTC-GTATG
834 CCAACATGTGCTGCCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAAC-TCAGTATG
* * * *
18617889 CTTAGACTGGGAATGAACTCCATATGCCTAAGTTAACCCATGAAATGAGCGT---GCG-T-----
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTAAGCC
* * * *
18617945 --CC-------C-GG--GG---A-TC--GG--C--TGGGTCCCCCTATGCGTGTTGCCAATCCTG
66 GGCCAGAGGGGCGGGATGGACAAGTCGGGGATCGACGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * * *
18617988 CTACCGCAACCATCGATCCGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACT
131 CTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
18618053 GACAAAATGAGCAGGCGGGTGGGCGGGCGGGCACTACGCAGGCTAGAGAGACGGGATGCGCAAGC
196 GACGAAACGAGCGGGCGGGCGGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
18618118 CGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTAATATTTCTACGTGCCAATTCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * *
18618183 TTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACAA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
18618248 CTCGTTTTCTATTTTTCAAGATTTTTAAAACTTTTTATGGTTCCGGATTTTTTAAAATTTTTTTG
390 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * * * *
18618313 GAAGGATTTTTTGCCCCAAACTTGGAAGATGAGATCCTTGTATTTATATTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
*
18618378 TTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
18618443 ACACTTTAATGGCTACTGGCAGCAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18618508 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
18618573 TGTGCGCACACCCCCCCGGCCCCCCCAATCGTCGGAACCCTAATGCCGTCGGTCAAGTTCTCTGA
715 TGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAAT-AC--C-GTCAGGTTCTCTGA
* * ** * *
18618638 CGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
775 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAACA
* * * *
18618703 TGTGCTGCCGTAACCCTC-AGT-CTGATTCGATCTTAGATTGGGAATGAACTCTGTATG
840 TGTGCTGCCGTAACCCTCGA-TCCAG-TCCGATCTTAGACTGGGAATGAACTCAGTATG
* * * * * * *
18618760 CTTACACTGGGAATGAACTCCGTATGCCTAAGTGAACCGACGAAATGAGCATGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTAAGC
* * * * *
18618825 TGGCCAGAGGGGCGGGAT-GAGCAAGTCGGGGATCAGCCGAGTCCCCCTTTGCGTGCTGCCAATC
65 CGGCCAGAGGGGCGGGATGGA-CAAGTCGGGGATC-GACGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * ** * * *
18618889 CTACTGCC-CTAACCCTTGGTTTC-ATCTGATCTTAGACTAGGAATGAACTCAGTATGCCTAAGT
128 CTGCTACCAC-AACCC-TCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
18618952 CAACC
191 CAACC
18618957 CATAAAACGA
Statistics
Matches: 6411, Mismatches: 717, Indels: 379
0.85 0.10 0.05
Matches are distributed among these distances:
867 30 0.00
868 27 0.00
869 369 0.06
870 147 0.02
871 178 0.03
872 3 0.00
873 65 0.01
874 493 0.08
875 13 0.00
876 4 0.00
877 7 0.00
878 1 0.00
880 3 0.00
881 191 0.03
882 5 0.00
883 11 0.00
884 472 0.07
885 3 0.00
886 2 0.00
887 4 0.00
888 11 0.00
889 83 0.01
890 504 0.08
891 304 0.05
892 241 0.04
893 99 0.02
894 87 0.01
895 352 0.05
896 103 0.02
897 335 0.05
898 235 0.04
899 239 0.04
900 28 0.00
901 104 0.02
902 681 0.11
903 294 0.05
904 101 0.02
905 260 0.04
906 226 0.04
907 95 0.01
908 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTAAGCC
GGCCAGAGGGGCGGGATGGACAAGTCGGGGATCGACGGGTCCCCCTCTGCGTGCTGCCGATCCTG
CTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATACCGTCAGGTTCTCTGACGATGC
TCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAACATGTGCT
GCCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCAGTATG
Found at i:18617914 original size:26 final size:26
Alignment explanation
Indices: 18617863--18617915 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18617853 CCGGTTCGAT
* *
18617863 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18617889 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18617915 C
1 C
18617916 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18619839 original size:26 final size:26
Alignment explanation
Indices: 18619788--18619840 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18619778 CTAGTCCGAT
* *
18619788 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18619814 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18619840 C
1 C
18619841 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18621789 original size:26 final size:26
Alignment explanation
Indices: 18621738--18621790 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18621728 CTAGTCCGAT
* *
18621738 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
18621764 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18621790 C
1 C
18621791 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18622624 original size:26 final size:26
Alignment explanation
Indices: 18622584--18622636 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18622574 CCGGTCAGAT
* * *
18622584 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGCAATGAACTCCGTATG
18622610 CTTAGACTAGCAATGAACTCCGTATG
1 CTTAGACTAGCAATGAACTCCGTATG
18622636 C
1 C
18622637 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGCAATGAACTCCGTATG
Found at i:18623524 original size:26 final size:26
Alignment explanation
Indices: 18623488--18623540 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18623478 CTGGTTCGAT
*
18623488 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18623514 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18623540 C
1 C
18623541 GGGCCAAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18623735 original size:245 final size:245
Alignment explanation
Indices: 18623296--18623785 Score: 650
Period size: 245 Copynumber: 2.0 Consensus size: 245
18623286 GCCAATATAA
* *
18623296 GGGCTAAGTACCAGCAACCCATCGCCACATAGATGTGCACAACACCCCCCGACCCCCCGATGTCG
1 GGGCCAAGTACCAGCAACCCATCGCCACATACATGTGCACAACACCCCCCGACCCCCCGATGTCG
*
18623361 AAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATGCTCTAGCAATGGTGACCCGATGAAGAAAA
66 AAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGCTCTAGCAATGGTGACCCGATGAAGAAAA
* * ** *
18623426 ATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTAACGCTACCCTCGGTCTGGTTCGATCTT
131 ATACGACACCAGCACATGCCCAAGCCCAGCATGTGCTAACGCAACCCTCGGTCCAGTCCGATCTT
18623491 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGC
196 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGC
*
18623541 GGGCCAAGTACCAGC-ACCCATCG-CACAT-CATGTGCGC-ACACCCACCCCGACCCCCCCGATC
1 GGGCCAAGTACCAGCAACCCATCGCCACATACATGTGCACAACA-CC-CCCCGA-CCCCCCGAT-
* * * * ** * *
18623602 GTC-AGAACCTCAATGCCGCC-GTTAAGGTTCTTCTACGATGCTCTGGTGATGGTGCCCCGGTGA
62 GTCGA-AACCCCAATGCCGCCGGTT-AGGTTCTCCGACGATGCTCTAGCAATGGTGACCCGATGA
** ** * **
18623665 AGAAAAATGTGGTACCAGCACATGCGCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCC
125 AGAAAAATACGACACCAGCACATGCCCAAGCCCAGCATGTGCTAACGCAACCCTCGGTCCAGTCC
* *
18623730 GATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
190 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGC
18623786 CTAAGTCAAC
Statistics
Matches: 213, Mismatches: 26, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
241 3 0.01
242 9 0.04
243 11 0.05
244 21 0.10
245 169 0.79
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.19
Consensus pattern (245 bp):
GGGCCAAGTACCAGCAACCCATCGCCACATACATGTGCACAACACCCCCCGACCCCCCGATGTCG
AAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGCTCTAGCAATGGTGACCCGATGAAGAAAA
ATACGACACCAGCACATGCCCAAGCCCAGCATGTGCTAACGCAACCCTCGGTCCAGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGC
Found at i:18624260 original size:26 final size:26
Alignment explanation
Indices: 18624220--18624272 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18624210 ACGGTTCGAT
*
18624220 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
18624246 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18624272 C
1 C
18624273 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18626932 original size:26 final size:26
Alignment explanation
Indices: 18626896--18626948 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18626886 TAGGTTCAAT
* *
18626896 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18626922 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18626948 C
1 C
18626949 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18627827 original size:26 final size:26
Alignment explanation
Indices: 18627791--18627843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18627781 CTGGTCCGAT
18627791 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18627817 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18627843 C
1 C
18627844 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18629180 original size:877 final size:880
Alignment explanation
Indices: 18624238--18647646 Score: 18761
Period size: 877 Copynumber: 26.1 Consensus size: 880
18624228 GGGAATGAAC
* * * * ** *
18624238 TCCGTATGCTTAGACTGGAAATGAACTTCGTATGCCTAAGTCAACTCACGAAATGAGCGTATGGC
1 TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * *
18624303 CCCTCAGCTGGCCAGAGGGGCGAGATGC-CAAGCCGGGGATCGATCGAGTCCCCCTCTACGTGCT
65 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCT
* * * * * * * *
18624367 GTCGATCCTGCTGCTGCAACCCGCGATCTGGTCCGATCTTAGACTGGGAATTAGCTCCGTATGCC
130 GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
18624432 TAAGCCAACCGACGAAATGA--GTGGGCAGACGGGCGGGCGGGCACTACG-TCGGCCAGAGAGAC
195 TAAGCCAACCGACGAAACGAGCGCGGGC-G-GGGGCGGGCGGGCACTACGCT-GGCCAGAGAGAC
* * *
18624494 GAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCA
257 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
18624559 TGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
322 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * ** * *
18624624 CCTGGCAAGATGACTCGTTTTCTATTTTTCACCATTTTTGAAACTTTTTTCAGTTCGGGATTTTT
387 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTT
* ** * *
18624689 TAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGATGTGATCCTTCTATTTTTGTTGG
452 TAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * * *
18624754 CATGCATAAAAAAAGTCAACTAAAAACTCAAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGT
517 CATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
18624819 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA
582 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
18624884 GGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACAC
647 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
18624949 CCATTGCACATCATGTGCGCACACCCCCCCGATCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
712 CCATCGCACATCATGTGCGCACA-CCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
*
18625014 TCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA--T-ACAGCACAGCACA
775 TCAGGTTCTCC-GAGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGACA-C-CAGCACA
* * * ** *
18625076 TGCCCGAGCCTAGCATGTGCTGTCACAACCCT--TGGTC-C--GG
836 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCATCTCATGA
** * * *
18625116 TCCGA-GCTTAGACTGGTCATGAACTCCGCATGCCTAAGTCAAACCATGAAACGAGCGTGCGGGC
1 TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * ** *
18625180 GCTCTGTCGGCCAGAGGGGCGGGATGCGCAAGCTG-GGCATCGGCCGGGTCCCCCTTTACGTGCT
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATCGATCGGGTCCCCCTCTACGTGCT
* * * * **
18625244 ACCGATCTTGCTACTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
130 GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
18625309 TAAGCCAACCGATGAAAC-A-AGCAGGCGTATGGGCGGGCGGGCACTACG-TCGGTC-GTAGAGA
195 TAAGCCAACCGACGAAACGAGCGCGGGCG--GGGGCGGGCGGGCACTACGCT-GGCCAG-AGAGA
* * *
18625370 CGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGC
256 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
18625435 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTT
321 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * ** * *
18625500 TCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTACGGATCGAGATTTT
386 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTT
* * ** ** * *
18625565 TTAAAGTTTTTTCGAAAGAAGTTTTGGAACTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
451 TTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
18625630 GCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
516 GCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
18625695 TGTCCCCTTTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
581 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * * *
18625760 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGAATAGGGGACCAATATAAGGGCCAAGTACCGGCA
646 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
18625825 CCCATCGCAAATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCACCG
711 CCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCG
* *
18625890 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACAT
774 GTCAGGTTCTCCGA-GATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACAT
* *
18625955 GCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCTGGTCCGATCTAAGATTGGGAATGAA
837 GCCCGAGCCCAGCATGTGCTGCCGCAACCC----TC--GT-C-ATC------T---CATG-A
* * * *
18626017 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCATGAAACGAGCCTGCGC
1 -TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * * *
18626082 GCGCTCAGCCAGCCAGAGGGGTGAGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTCCATGC
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * * * * * * * *
18626147 TGCCGATCTTGCTACCGCAACCCTCAGTCCAGTTTGATGTTAGACTGGGAGTGAACTTCGTATGG
129 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18626212 CTAAGCCAACCGAAGAAAC-A-AGCGGGCGGGCGGGCGGGCGAGCACTACGCCGGCTAGAGAGAC
194 CTAAGCCAACCGACGAAACGAGCGCGGGC-GG-GGGCGGGCGGGCACTACGCTGGCCAGAGAGAC
* * * * * * **
18626275 GAGATGCGCAAGTCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTTTGTG
257 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
18626340 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTT
322 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
** * *
18626405 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTAAATTTTTTGCGGTTCGGGATTTTT
387 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTT
* ** * * *
18626470 TAGAATTTTTTTAGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGG
452 TAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
18626535 CATGCACAAAAAAATTCAGCT--AAA----AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
517 CATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * * *
18626594 GTCTCCATTTTAGACACTTTAATGGCTACTAGTAGCAAACCTATAAAATCTCAAATGCTCTTTAA
582 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * * * * *
18626659 AGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCACTATAAAGGCCAAGTACCAACAG
647 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
18626724 CCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCTCCGGAACCCCAATGCCGCCGGT
712 CCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * **
18626789 CAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGTGACACCAGCACAT-C
776 CAGGTTCTCC-GAGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGC
* * * *
18626853 TCGAGCCTAGCATGTACTGCTGCAACCCTCGGATAGGTTCAATCTTAGGCTGGGAATGAA
839 CCGAGCCCAGCATGTGCTGCCGCAACCCTC------G-TC-ATC-T---C-----ATG-A
* *
18626913 CTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCGTGCGG
1 -TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * *
18626978 GCACTCAACCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGC
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * * * *
18627043 TAG-CGATCCTGCTGCCACAACCCTCGATCTGGTCGGATCTTAGACTGGGAATGAACTCTGTATG
129 T-GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18627107 CCTAAGCCAATCGACGAAACGA--GCAGAC--GGGCGGCCGGGCACTACGCTGGCCAGAGAGACG
193 CCTAAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCTGGCCAGAGAGACG
* * * * *
18627168 GGATCCGCAAGCCATGGATCGATAGCGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
258 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* * *
18627233 GCTAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTC
323 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* ** * **
18627298 ATGGCTAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTT
388 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT
* * *
18627363 AAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCGTGTATTTTTGTTGGC
453 AAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
18627428 ATGCACAAAAAAATTCAGCT--AAA----AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
518 ATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
18627487 TCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
583 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
18627552 GGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCACTATAAGGGCCAAGTACCAGCAGC
648 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * *
18627617 CATCGCACATCATGTGCGCACACACCCCCCGACCCCCCCGATCGTCGGAACCCCAACGTCGTCGA
713 CATCGCACATCATGTGCG--CACACCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
* ** * * * ** *
18627682 TCAGGTTTTTTGGTGATACTCCGACGATGGTGCTCCGGTGAAGAAAAATGTGGCACCAGCACATG
775 TCAGG-TTCTCCGAGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATG
* *
18627747 CCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
838 CCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--GT-C-ATC-T---C-----ATG-A
* * * *
18627808 CTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGTGG
1 -TCC-GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * *
18627873 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCTTCTACGTGC
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * * * * * * * *
18627938 CGTCAATCTTGCTGCTGCAACCCACGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
129 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18628003 CTAAGCCAACCGACGAAACGAATGTGCAGAC--GGACGGGCGGGCACTATG-TCGGCCAGAGAGA
194 CTAAGCCAACCGACGAAACG-A-GCGCGGGCGGGGGCGGGCGGGCACTACGCT-GGCCAGAGAGA
18628065 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT--G----GG------TT--TATTTCTGC
256 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
18628116 ATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
321 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
18628181 TCATGGTAAGACGACTCGTTCTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTT
386 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTT
* * *
18628246 TTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTG
451 TTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
18628311 GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
516 GCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
18628376 TGT-CCCATTTCAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGATCTTTA
581 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
18628440 AGGGGGTGTGAGTTTTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
646 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * *
18628505 CCCATCGCACGTCATGTGCGCACACCCCCCGGCCCCCCAATCACCGGAACCCTAATGCCGTCGAT
711 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
*
18628570 CAGGTTCTCCGAGATGCTCCTGCGATGGTGCCCC-AGTGAAGAAAAATGTGACACCAGCACATGC
776 CAGGTTCTCCGAGATGCTCC-GCGATGGTGCCCCGA-CGAAGAAAAATGTGACACCAGCACATGC
* *
18628634 CCGAGCCTAGCATGCGCTGCCGCAACCCTCG-C-TC-CA-G-
839 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCATCTCATGA
* * *
18628671 TCCGAT-CTTAGACTGGGATTGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGC
1 TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * *
18628735 GCTCAACCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTA
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTG
* * * * * * *
18628800 CGGATCCTACTACCGCAACCCCCAGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCT
131 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
18628865 AAGCCAATCGATGAAACGAGCGGGCGGGCGGATGGGCGGGCGGGCACTACACTGG-CTGAGAGAC
196 AAGCCAACCGACGAAACGAGC--GCGGGCGG--GGGCGGGCGGGCACTACGCTGGCCAGAGAGAC
* * *
18628929 GGGATGCGCAAGCCGTGTATCGATAGGGTGGTAAGTGCGTTTAGGCACATCTTCATATTTCTGCA
257 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* * * *
18628994 TGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAATGTTCCCTTAAGCCTTCACGTTAACTTT
322 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * ** * *
18629059 CAAGGCAAGACAACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTT
387 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTT
* *
18629124 TAAAATTTTTTCGGGAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
452 TAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * *
18629189 CATGCTCAAAAAAATTCAACTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
517 CATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
18629254 GTCCCCATTTCAGACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
582 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
18629319 GGGGGTG-AAGTT-TCGAGGTTTGATGAGGGAGA-GGGGCCAATATAAGGGCCAAGTACCAGCAC
647 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * **
18629381 CTATCACACATCATGTGCGCACACCCCCCGGCCACCCGATCGCCGAAACCCCAATGTAGCCGGTC
712 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * *
18629446 AAGTGCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCC
777 AGGTTCTCCGA-GATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCC
* *
18629511 CGAGCCCAGCATGTGCTACCGCAACCCTCAGTCTAGTTCGACTTATACTGGAAA
840 CGAGCCCAGCATGTGCTGCCGCAACCCTC-GTC-A--T---C-T-CA-T-G--A
* * * * *
18629565 TAAACTCTGTATGCTTAGTCTGGGAAGGAACTCCGTATGCC-AAGTTAACCTATGAAACGAGCGT
1 T---C-C-G-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * *
18629629 GCGGGTGCTCAGTCGGCCAAAGGGGCAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTAC
60 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTAC
* * * *
18629694 GTGCTGTCGATCTTGCTGCTGCAACTCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
125 GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* ** * *
18629759 ATGCCTAAGCCAACCCACGAAATTA--GCGAGC--GGGCCGGCGGGCACTACG-TCGGCCA-A-A
190 ATGCCTAAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCT-GGCCAGAGA
* * ** *
18629817 -A----A---G--A----TGG---GATA----CGTAAG-CCG--T-GGAACATCTTCATATTTCT
254 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
18629857 GCGTGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAG
319 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
18629922 TTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATT
384 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATT
* * *
18629987 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATTCTTGTATTTTTGT
449 TTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
18630052 TGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTTCAAGATTTTGTGAGCATTTGAAAAA
514 TGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAA
18630117 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
579 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
18630182 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
644 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * *
18630247 CACACATCGCACACCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGAAACCCCAAGGTCGC
709 CACCCATCGCACATCATGTGCGCACACCCCC-CGG-CCCCCCGATCGCCGGAACCCCAATGCCGC
* * ** *
18630312 CGGTTAGGTTCTCCGACGATGATCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCAC
772 CGGTCAGGTTCTCCGA-GATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCAC
* *
18630377 ATGCCCGAGCCCAGCATCTGCTGCCACAACACTCAGTCCGGTCCGATCTTAGACTGGGAATGAA
835 ATGCCCGAGCCCAGCATGTGCTGCCGCAAC-C-C--T-C-GT-C-ATC-T---C-----ATG-A
* * * * * *
18630441 CTCCATATGCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCAACGAAACGAACATGCGG
1 -TCC-GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * *
18630506 GTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGC
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * * * * ** *
18630571 TGCTGATCCTGCTCCCGCAACCCTCAGTCTGATCCAATCTTAAACTGGGAATGAACTCCGTATGC
129 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* ** * * *
18630636 CTAAGCCAACCCACGAAATTA--GCGAGC--GGGCGGGCGGGCACTACG-TCGGCCAGAAAGATG
194 CTAAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACG
* *
18630696 GGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCAA
258 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-A
18630761 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
322 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * * ** *
18630826 CATTGCAAGATGACTCGTTTTCTATTTTTTATGATTTTCAAAACTTTATGGGGTTCTGGATTTTT
387 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTT
* ** *
18630891 AAAAATTTTTT-GGAAGAAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGG
452 TAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
18630955 CATGCACAAAAAACTTCAGCTAAAAACTTTAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGT
517 CATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
18631020 GTCCCCATTTTAGACACGTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAA
582 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
18631085 AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTGCCAGCAT
647 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
18631149 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCACCGGAACCACAATGCCGCCGGTC
712 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * * * *
18631214 AGGTTCTCC-AGTAACGCTCCGGCGATGGCGCCTCGAC-AAAAAAAAT-TACGGCACTAGCACAT
777 AGGTTCTCCGAG--ATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGT--GACACCAGCACAT
* *
18631276 GCCCGAGCCTACCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAA
837 GCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--GT-C-ATC-T---C-----ATG-A
* * * * *
18631338 CTCCGTATGCTTAGACTAGGAATTAACTTCGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGG
1 -TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
** * * * *
18631403 GCGCTCAGCCGGCC-GAGGGAAGGGATACGCAAGCCGAGGATCGATCGAGTCCCCCTCTGCATGC
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * ** ** * * * * * *
18631467 TACCAATCCTATTATCGCAACCCTGGGTCCGATCCGATATTAGACTAGGAATGAACTCCGTATGT
129 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18631532 CTAAGCCAACCGACGAAACGA--GCGGGCGAACGGGCGGGCGAGCACTACGCCGGCTAGAGAGAC
194 CTAAGCCAACCGACGAAACGAGCGCGGGCG--GGGGCGGGCGGGCACTACGCTGGCCAGAGAGAC
* * *
18631595 GGGATGCACAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTTATATTTCTGCA
257 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
18631660 TGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTC
322 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * *
18631725 CATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGA-TTTT
387 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTT
* * *
18631789 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGG
452 TAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
18631854 CATGCACAAAAAAATTCAGCT--AAA----AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
517 CATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
18631913 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA
582 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
18631978 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCACTATAAAGGCCAAGAACCAGCAC
647 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
18632043 CCATCGCACATCATGTGCGCACACCCCCTGACCCCCCCGATCGTCGGAACCCCAATGACGTCGGT
712 CCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* ** * *
18632108 CAGGTTCT--GCGA-------CGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCC
776 CAGGTTCTCCGAGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCC
* * * *
18632164 GAGCCCAGCATGTGCTGTCACAACCCTCG--GT-T--TGG
841 GAGCCCAGCATGTGCTGCCGCAACCCTCGTCATCTCATGA
* * * *
18632199 TTCGAT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTGAGGGC
1 TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * *
18632263 GCTCAGTCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGACCAGGTCCCCCTCTGCGTGCTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTG
** * * * ** * *
18632328 TTGATCCTGCTGCCGTAACCCTCAGTCTGGTCCAATCTTGGACTGGGAATGAACTTCGTATGCCT
131 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
***
18632393 AAGCCAACCGACGAAACGA------GC--GGGCGGGCGGGCACTACGCCACCCAGAGAGACGGGA
196 AAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGA
* **
18632450 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGTGTGCC
261 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * *
18632515 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACATGAAGTTTCAAG
326 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
18632580 GCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGAGATTTTTTAAA
391 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * * *
18632645 ATTTTTTCGGAAGGTATTTTCGCCCCAACCCTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
456 ATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * * *
18632710 CACAAAAAAAGTCTGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAACCTGTC
521 CACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-GTGTC
** * *
18632775 CGTATTTCAGACACTTTAATGGGTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
585 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*** * *
18632840 GGCACGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGAACCAGCACCCA
650 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * *
18632905 TCGTACATCATGTGCACACACACCCTTCGGCCCCCCCGATCGCTGGAACCCCAATGTCGTCGGTC
715 TCGCACATCATGTGCGCACAC-CCC-CCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * * * *
18632970 AGGTTTTCCGGCGATGCTCCGACGATGGTACCCCGATGAAGAAAAATG-CAGCACCAACACATGC
777 AGGTTCTCC-GAGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGCACATGC
** ** *
18633034 CCGAGCCCAGCATGTGCTATCGTC-ACCCT--TGGTC-C--GG
839 CCGAGCCCAGCATGTGCTGCCG-CAACCCTCGTCATCTCATGA
* * *
18633071 TCTGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCATGCGGGC
1 TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * *
18633135 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCG-GCTGGGTCCCCCTCTACGTGCT
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGGTCCCCCTCTACGTGCT
* ** * *
18633199 GTCGATCCTGCTGTTGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCC
130 GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
18633264 TAAGCCAACCGACGAAAC-A-AGCGGGC--GGACGGGCAGGCACTATG-TCGGCCAGAGAGACGG
195 TAAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGG
*** * * *
18633324 GATGCGCAAGCCGTGGATCGATAGGGTGACGGGTGGGTTTAGGCATATCTTCATATTTCTACTTG
259 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
18633389 CCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGCCCCTTAAGCCTTCACGTGAAGTTTCA
324 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * * **
18633454 TAGCAAGA-TACTCATTTTCTATTTTTCACGA-TTTCTGAAGC-TTTT----TTC--GATTCTCC
389 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC-AAAACTTTTTACGGTTCGGGATT-TTT
* * ** * * * * * ** ** * * * ** * ** **
18633510 GACAA--TGCTCCGACGATG--GT-GCCCC-GACGAAGAAAAATGCGA-CACCAGCA--CATGCC
452 TAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAAC-TTGGTAGACGTGATC-CTTGTATTTTTGTT
* * ** ** * * * * * ** * * * ** *
18633566 CG-A-GC-CCAGCATGTGCTGC-GACAACCCTTGGTCTGGTTC--GATCTT-AGA-C-TGGGAAT
515 GGCATGCACAAAAAAATTCAGCTAAAAACTCTAAG--T-GTACAAGATTTTGTGACCATTTGAAA
* * ** ** * * * ** * ** *
18633622 GAA--CTCCGTATGCTT-AG--ACTGGGAAT-G-AACT--CCGTATGCCTAAGTCAACCCACGAA
577 AAAGTGTCCCCAT--TTCAGACACT-TTAATGGCTACTGGCAGCAAACCT--GTAAAATCTC-AA
* ** * * * * * * * *
18633678 ACGAGC-GT--GCGGGCGCTCAG--C-C--GG-CT-A-GAGTGG-T-GGGATGCGCAA-GT-CGG
636 ATGCTCTTTAAGGGGGTG-TGAGTTCTCGAGGTTTGATGAG-GGATAGGG-GGC-CAATATAAGG
* * * * *** * * *
18633728 G-GATCG-ACCGGGTCCCCCTCTACGTGCTGTTGATCCTGTTGC-CACAACCTCGATCTGGTTCG
697 GCCA-AGTACC-AG--CACC-C-A--T-C-GCACATCATG-TGCGCAC-ACC-C--CCCGG--C-
* * * * * ** * * * *** **
18633790 ATCTCAGATTG-GGAATGAACTCCGTATGCTTAAGCCGATCGACG--AAACGAGCAGGTG-GGCG
744 -CCCCCGATCGCCG---GAAC-CCCAATGC---CGCCGGTC-AGGTTCTCCGAG-A--TGCTCCG
* * ** * * * ** ** ****
18633851 GGCA-GGCTTGCACTCCGCCGACCAAAGAGACGGGATGCGA-AAGC-TGTGGATCGATAGGGTGG
797 CG-ATGG--TGC-C-CCGACGAAGAAA-A-ATGTGA--C-ACCAGCACAT-GCCCG--AGCCCAG
* * * *** * * * *
18633913 TAGGTGGGTTTAGGCACATCTTCAT-ATTTTTGCATGCCAA
849 CA--TGTGCTGCCGCA-ACCCTCGTCA--TCT-CATG---A
** * ** ** * * * * *
18633953 TGCC-ATTTTTATGGCTTGTAAATTCA-TAC-AATGGTCCCTTAAG-C--CTTCACGTGAA-GTT
1 T-CCGATGCTTA-GAC-TGGGAATGAACTCCGTAT-G--CC-TAAGTCAAC-CCACG-AAACG-A
* * * * **** * ***** *** *** ** **** * *
18634011 TCATGGCAAGACGACTC-GTTTTCTA-TTTTTCACAATTTTCAAAAC-TTTTTACGGTTTGGGAT
56 GCGT-GC-GGGCG-CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT-C-GATCGGG-T
**** ** ** ** * * *** ** * * * * * * *
18634073 -TTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTC-AT-AGATGTGATTCTT-GTATT
115 CCCCCTCTACGTGCTGCCG-A-TCCTGCT-GCCGCAACCCTCGGTCCGGTCTGA-TCTTAG-A--
* * * *** **** * ** * ***** * ******
18634134 TTTCTTGGCATGCA-T-AAAAAAATTAAGCTACAAACTCGAAGTGGACAAGATTTTGTGACCATT
173 ---CTGGGAATGAACTCCGTATGCCTAAGC--C-AAC-CGACG-AAACGAGCGCGGGCGGGGGCG
* ***** * * ** * * * ** * ** * *
18634197 TGAAAAAAGTATCCCCAT-TTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAA
230 GGCGGGCACTA--CGC-TGGCCAGAGA----GA-CGGGA-T-GC-GCAAGCC-GT-GGATC-GAT
* * ** * ** * ** * * ** ** * *** *
18634261 ACGCTCTTTAAGG-GGGTGT--G-AGTTCTTGAGGTTTGATG-AGGGTTAGGGGGCCAATAGAAG
281 AGGGT-GGT-AGGTGGGTTTAGGCACATCTTCATATTT-CTGCA-TGCCA--ATGCCATTTTTAT
** ** * * * *****
18634321 GGACAAGTACCAGCACCCATCGCACATCAT-GTGCGC--ACACCCCTC-CG-GCCCCCTCGATCG
340 GG-CTTGTA--A--ATTCAT---ACA--ATGGT-CCCTTA-AGCCTTCACGTGAAGTTTC-AT-G
* * * ***** * * ** * * * ** ******
18634381 GC-AGA--ACCCCTATGTC-GCCGGTCA-GGTTCTC-CGAC----GATGGTGCCCCGACGAAGAA
391 GCAAGACGACTCGT-TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT-TCGGGATTTTTTA
***** * * ** ** ** ** ** * *
18634436 AAATGCAGCACCAGCACATG-CCTGAGCCCAGCATGTGCTGCTGCAACCCTTGATCCGGTGTGAT
454 AAAT--TTTTTCGGAAGGTGTTTTG-GCCC--CA--AACT--TGGTAGACGTGATCC-TTGT-AT
* * * * * **** * * * * * * **
18634500 CTTAGACTGGGAATGAACTCTGTATGCCTATTTCAACTGACAAAATGAGCGGGCGGGCAGGCGGG
508 TTTTG--TTGGCATG--CAC---A-AAAAAATTCAGCT---AAAA--A-C--TC---TAAGTGTA
** * *** ** * ** * * * * * *
18634565 CGGGCTTTACACCGACCA-GAGAGACGAGATG-CGCAAGCCGTGGATC-GATAGGGTGGTAGGTG
554 CAAGATTT--TGTGACCATTTGAAAAAAG-TGTC-C---CCAT--TTCAGACA--CT-TTA-ATG
* * * *** * * * ** * *
18634627 GGT-TTAGGCA-CATCTTCATA-TTGTTGCATC-CCAATGC-CATTTTTATGGCTTGTAAATTCA
606 GCTACT-GGCAGCA-----A-ACCTGTAAAATCTCAAATGCTC--TTTAAGGGGGTGTGAGTTC-
* **** * *** * * * * * * *** * **
18634687 TACAATGGTCCCTTAAGCCTTCA-CGTG--AAGTTTCATGG-CAAG-ACGACTTGTTTTCTATTT
661 T-CGA-GGTTTGATGAGGGAT-AGGGGGCCAA-TATAAGGGCCAAGTAC--C-AG-CACCCATCG
** * ** * ***** *** ** ****** ****** * ** *
18634747 TTCA-CGATTTTTG-AAACTTTTTGTGGTTCAGGATTTTTTTAAATTTTTTG-GGAAGG--AGTT
718 CACATC-ATGTGCGCACACCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG-G
* * ** ** ***** * * ** *
18634807 TTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTTTTGGCATGAAAAAAAAAAT-TCACCT
780 TT---CTC---C---G-AGA--TGCTCCGCG-ATGGTGCCCCG-ACGAAGAAAAATGTGACACC-
** * * * * * ** * *
18634871 A--A-AAACTCGAAGTGTACAAG-ATTTTG-TGACCATTTGAAAAAACT-GTC--CCCAT-T
830 AGCACATGCCCG-A--G-CCCAGCA-TGTGCTG-CC----G-CAACCCTCGTCATCTCATGA
** ** * *** * * * ** * ** *
18634924 TCAAACACTTTAATTGCTACTGGCAGCAAAC-CTGTA----AAATCTCAAATGCTCTTTAA-GGG
1 TCCGATGC-TT-A--G--ACTGGGAATGAACTCCGTATGCCTAA-GTC-AACCCAC-GAAACGAG
* * * ** ** ** * ** * * **
18634983 GGTGTGAGTTCTCAAGGTTTGATGAGGAATAGGGGC-CAATACAATGGCCAACTACCAGCACCCA
57 CGTGCGGGCGCTC-A-----GCCG-GCCAGAGGGGCGGGATGC----G-CAA--GCC-G-A-GGA
** ** ** *
18635047 TCGCACATCATGTGCGCAAACCC-CCCCG-GCCCCTCGAT-C-GCCTGAACCCCAATGTCGCCAA
105 TCG---ATCGGGT-C-C---CCCTCTACGTGCTGC-CGATCCTG-CTG--CCGCAA---C-CC--
* ** * ** * * *
18635108 TCAGGTTCTCCGG-CGATGGTGCCCAGAC-GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
152 TC-GG---TCCGGTC--TGAT-CTTAGACTG--G--GAATG-AACTCC-G--TATGCCTAAG-CC
* * * * ** * *** * * *
18635171 AGCATGTGCTGCCGCAACCCTTGATC-CGGTGCGATCTTAGACTGGGAATGAACTCCG-TATGCT
201 A--A----CCGACG-AA-AC--GAGCGCGG-GCG----GGGGC-GGGCGGGCACTACGCT-GGC-
* * ** * * * * * * * * * * * ***
18635234 TAGACTGGGAATGAACTCCGTATGCCGATGCCAACCGACAAAACGAGCGGGAGGGCGGGCGAGCA
248 CAGA--GAGACGGGA-TGCGCAAGCCG-TG--GATCG---ATA-GGGTGGTA-GG-TGG-GTTTA
* ** * **** * * *
18635299 GGCACTACGCCGGCCAGAGGGATGAGATGCGCAA-GCCGTGGATCGATAGGGTGGTAGGTGGGTT
300 GGCAC-A--TC-TTCATATTTCTG-CATGC-CAATGCC----AT---T----T-TTA--TGGCTT
*** * * * * * *
18635363 -TAGGCACATCTTCATATTTTTGCATGCC--AATGCCATTTTTATGGCATGTAAATTCAAACAAT
345 GTA---A-A--TTCATA-CAATG-GTCCCTTAA-GCC---TTCA---CGTG-AAGTT---TC-AT
* * * *
18635425 GGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTT
390 GG---C--AAGAC--GAC-T--CGTTT--T-------CTA--T-TTTTC-A-----C--GATTTT
* ** * * * * *
18635490 CGAAACTTTTTGTGATTCAGGATTTGTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTGG
425 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGG
*
18635555 TAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGT-AGTGTA
490 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-TAAGTGTA
** * * *
18635619 CAAGATTTTACGACCATTTGAAAAAAGTGTCCGCATTTGAGACACTTTAATGGCTACTGACAGCA
554 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
18635684 AATCTGTAAAGTCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGG
619 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * ** * *
18635749 GGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTATGCAAACCCCCCCAGCCCCC
684 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC
* * *
18635814 CGATCACCAGAACCCCAATACCGCCGGTCAGGTTCT-C----TG----GCGATGGTGCCCCGACG
748 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAGATGCTCCGCGATGGTGCCCCGACG
* * * *
18635870 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCCCGCAACCCTTGGTCCGGCC
813 AAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC----T-C-G-T
18635935 CGATCTTAGACTGGGAATGAA
871 C-ATC-T---C-----ATG-A
* * *
18635956 CTCCATATGCGTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGG
1 -TCC-GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * * *
18636021 GCGCTCAGCCGGCCAGAAGGGTGGGATGCGCAAGCCGGGGATCGACCGGTTCCCTCTCTGCATGC
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * * **
18636086 TGCCGATCCTGGTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
129 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* *
18636151 CTAAGCCAACCGACGAAACGA------GC--GGGTGGGCGGGCACTAC-ATCGGCCAGAGAGACG
194 CTAAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACG
* * *
18636207 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTTGGCACATCTTCATATTTGTGCAT
258 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
*
18636272 GCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
323 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * *
18636337 AAGGCAAGACGACTCG-TTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTTGGGATTTTTT
388 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT
* * * *
18636401 AAAATTTTTTTGGAAGGAT-TTTTGGTCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTAGG
453 AAAATTTTTTCGGAAGG-TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* ** * *
18636465 CATGCA-AAAAAAATTCAGCTAAAAACTGTAAGTGTACAAGATTTTACGACCATTTCAAAAAAGG
517 CATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
18636529 GTCCCTATTTTAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
582 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
18636594 GGGGGTGTGAGTTCTCGAAGTTTGACGAGGGATAGGGGGCAAATATAAGTGCCAAGTACCAGCAC
647 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
** * *
18636659 CCATCGCACATCATGTGCGCACA-CCCCCAACCCCCTCGATTGCCAGAACCCCAATGCCGCCGGT
712 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGT
* * ** * *
18636723 CAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGT
776 CAGGTTCTCC-GAGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGC
* *
18636788 CCGAGCCCAGCATGTACTGCCACAA-CC-C-TCAGTC-CA-G-
839 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCA-TCTCATGA
* * * *
18636825 TCTGAT-CTTAGACTGGGAATGAACTCTGTATGCCTATGTCAACCCATGAAACGAGCGTGCGGGC
1 TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * * * * * * *
18636889 ACTCAACCGACCAGAGGGGCGGGATGCGCAATCCGTGGATCAACCAGGTCCCCTTTTGCATGCTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTG
* * ** * *
18636954 CCAATCCTGCTGCCACAACCCTTAGTCAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
131 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
18637019 AAGCCAACCGACGAAATGA--GCGGGCAGGCGGGTGGTCGGGCACTACG-TCGGCCAAAGAGACG
196 AAGCCAACCGACGAAACGAGCGCGGGC-GG-GGGCGGGCGGGCACTACGCT-GGCCAGAGAGACG
* * * *
18637081 GGATGCGCAAGCTGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTGTGAAT
258 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* *
18637146 GCCAATGCCATTTTTATGGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAACTTTC
323 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * **
18637211 ATGGCAAGACGACTCGTTCTCTATTTTTCA-TAGTTTTCAAAACTTTTTACGGTTCAAGATTTTT
388 ATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTCGGGATTTTT
* * *
18637275 TAAAATTTTTTCGGAAGGTATTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGG
452 TAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
18637340 CATGCACAAAAAAATTCAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGT
517 CATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
18637405 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGCTTTAA
582 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
18637470 GGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCAC
647 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
** * * *
18637535 CCATCATATATCATGTGCGCTCACCCCCCCCGGCCCCCCCGATCAG-CGGAACCCCAATACCGCC
712 CCATCGCACATCATGTGCG--CACACCCCCCGG-CCCCCCGATC-GCCGGAACCCCAATGCCGCC
* * * *
18637599 GGTCGGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGACGAAGAAAAATG-CAGCACCAGCAC
773 GGTCAGGTTCTCC-GAGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGCAC
* *
18637663 ATGGCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAA
835 ATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-GT-C-ATC-T---C-----ATG-A
* * * * *
18637727 CTCCGTTTGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACAAGCATGCGG
1 -TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * *
18637792 GCTCTCAGCTGGCCAGAGGAGCAGGATACGCAAGTCGAGGATCGATCGGGTCCCCCTCTACGTGC
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * * * * * * * *
18637857 TACCAATCCTGCTACCGCAACCCTCGATGCAGTCTGATCTTAGACTTGGAATGAACTTCATATGC
129 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* ** *
18637922 CTAAGCCAACCGACGAAATGA--GCATGC--GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
194 CTAAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGG
* * *
18637983 GATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
259 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
18638048 CCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCA
324 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* *
18638113 AGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA
389 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA
* * * *
18638178 AAATTTTTTTGGAAGGAT-TTTTGGTCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTAGGC
454 AAATTTTTTCGGAAGG-TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
** * *
18638242 ATGCA-AAAAAAATTCAGCTAAAAACT-TGAAGTGTACAAGATTTTACGACCATTTCAAAAAAGG
518 ATGCACAAAAAAATTCAGCTAAAAACTCT-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
18638305 GTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
582 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
18638370 GGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
647 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
18638435 CCATCGCACATC-TGTGCGCACACCGCCCGACTCCCTCGATCGTCGGAACCCCAATGCCGCCGAT
712 CCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * * **
18638499 CAGGTTCTCTGACGATGCTCCGGCGATGGTACCCCAACGAAGAAAAAT-ACAGCACCAGCACATG
776 CAGGTTCTCCGA-GATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGCACATG
* * * *
18638563 TCTGAGCCCAGCATGTGCTGCCACAACCCTCG--GTC-CA-G-
838 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCATCTCATGA
* * * *
18638601 TCTGAT-CTTAGACTGGGAATGAACTCTGTATGCCTATGTCAACCCATGAAACGAGCGTGCGGGC
1 TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * * * * *
18638665 GCTCAACCGACCAGAGGGGCGGGATGCGCAATCCGTGGATCAACCAGGTCCCCTTTTGCGTGCTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTG
* * * * *
18638730 CCAATCCGGCTGCCACAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
131 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* *
18638795 AAGCCAACCGACGAAATGA--GCGGGCAGGGGG-GTGGTCGGGCACTACG-TCGCCCAGAGAGAC
196 AAGCCAACCGACGAAACGAGCGCGGGC-GGGGGCG-GG-CGGGCACTACGCT-GGCCAGAGAGAC
* * * * *
18638856 GGGATGCGCAAGCTGTGGATCGATAGGGTGGTATGTGGGTTTAAGCACATCTTCATATTTGTGAA
257 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* * *
18638921 TGCCAATGTCATTTTTATGGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAACTTT
322 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* ** *
18638986 CATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACAATTCGAGATTTTT
387 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTT
* ** ** * * *
18639051 TAAAATTTCTTCAAAAGGAATTTTGGCCCCAAACTTGGTTGACGTGATCATTTTATTTTTGTTGG
452 TAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
18639116 CATGCATAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
517 CATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
18639181 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
582 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
18639246 -GGGGTGCGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCACCAC
647 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
18639310 CCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAACGCCGTCGGT
712 CCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * * * * * *
18639375 CAGGTTCTCCGGCGATGCTCCGACAATGGTTCCCCGTCAAAGAAAAATGCGGCACCAGCACATGC
776 CAGGTTCTCC-GAGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGC
* * * *
18639440 CTGAGCCCAGAATGTACTGCCGTAAGCCTCGGTCTGGTTCGATCTTAGACTGGCAATGAA
839 CCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--G-TC-A---T---CT--C-ATG-A
* * * *
18639500 CTCCGTATGCTTAGACTGGGAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCATACAG
1 -TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * * *
18639565 GCGCTTAGCCAGCCAGAGGGGCAGGATGCGCAAG-CTAGGGATCGACCGGGTTCCCCTGTACATG
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTACGTG
* * ** *
18639629 TTGCCGATCTTGCTGCCGCAACCCTCACTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
128 CTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
18639694 CCTAAGCCAACCAACGAAATGAGCGAGCGGGAGGGCGGGCGGGCGGGCACTACACCGGCCAGAGA
193 CCTAAGCCAACCGACGAAACGAGC--GCGGG-CGG-GGGCGGGCGGGCACTACGCTGGCCAGAGA
* *
18639759 GACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTT
254 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * * *
18639824 GCATGCCAATGCCTTTTTTATGGCTTTTAAATTCGTACAAAGGTCCCTTAAGCCTTCACGTGAAG
319 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * ** * * * *
18639889 TTTCATGGCAAGACGACTCATTTTCTACTTTTCACGATTTTTGAAACTTTTTGCAGTTTGGGGTT
384 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATT
* * **
18639954 TTTTAAAATTTTTTGGGAAGGCGTTTTGGCCCCAAACTTGGTAGACACGATCCTTGTATTTTTTT
449 TTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTT
*
18640019 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
512 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAA
* * * * *
18640084 AAAGTGTCCCCATTTCGGACACTATAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTT
577 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * *
18640149 TTTAACGGGGTTTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
642 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * * *
18640214 AGCAGCCTTCGTACATCATGTGCGCACACCCCCCGTCCCCCCTGATCGCCGAAACCCCAATGCCA
707 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCG
* * * * **
18640279 CCGGTCAGGTTCTCTGGTGATACTCCTACGATGGTGCCCCGACGAAGAAAAATGCAACACCAGCA
771 CCGGTCAGGTTCTC-CGAGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCA
* *
18640344 CATGCCCGAGCCCCGCATATGCTGCCGCAAACCTCGGTCCGGTCCGATCTTAGACTCGGAATGAA
834 CATGCCCGAGCCCAGCATGTGCTGCCGC-AACC-C--T-C-GT-C-A---T---CTC---ATG-A
* *
18640409 CTCCGTATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGG
1 -TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
*
18640474 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTATGTGC
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * * * * * ** *
18640539 TGTCGATCCTGTTGCCACAACCCTCAGTTCAGTGGGATCTTAGACTGGGAATGAACTCCGTACGC
129 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18640604 CTAAGCCAACTGATGAAACGA------------GAGGGCGGGCACTACGCCGGCCAGAGAGACGG
194 CTAAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGG
* * * *
18640657 GATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
259 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
18640722 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
324 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
18640787 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTA
389 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA
** * ** *
18640852 AAATTTTTTTAGAAAGTGTTTT-GCCCTTGAAC-TGGTAGACGCGATCCTTGTATTTTTGTTGGC
454 AAATTTTTTCGGAAGGTGTTTTGGCCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
18640915 ATGCACAAAAAAATTCAGCTACAAACTCGAAGTGTAGAAGATTTTGGGACCATTTGAAAAAAGTG
518 ATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
18640980 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAC
583 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
18641045 GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGTACC
648 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * *
18641110 CATCGCACATGATGTGCGCACACCCCCCCTGGCACCCTCGATCGCCAGAACCCAAATACCGCTGG
713 CATCGCACATCATGTGCGCACA-CCCCCC-GGC-CCCCCGATCGCCGGAACCCCAATGCCGCCGG
* * ** * *
18641175 TCAGGTTCTCCGACGATGCTCCGGCGATGGTGTCTCGGTGAAGAAAAATATGACACCAGCATATG
775 TCAGGTTCTCCGA-GATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATG
* * *
18641240 CCTGAGCCCAGCATGTGCTGCCGCAACCCTCG--GT-TC--GG
838 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCATCTCATGA
* * * ** * * *
18641278 TTCGAT-CTTAGACAGGGAATGAACTCAGTACACCGAAGTCAACCCACGAAACAAACGTGCGGGC
1 TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * ** * *
18641342 GCTCAGTCGGTCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGCCGGGGCCCCCTCTGCGTGCTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTG
* * * * * *
18641407 TCGATCCTGTTGCCGCAACCCTTGGTCCGGTCAGATCTTAGACTGGGAATGAACTTCATATGCCT
131 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* ** * *
18641472 AAGCCAACTGACGAAACGA--GCATGC--GGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGA
196 AAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGA
* * *
18641533 TGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC-TACC
261 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT-GC
* *
18641597 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAG-CTTCCATGTGAAGTTTCA
325 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT-CACGTGAAGTTTCA
* * * ** *
18641661 TGGCAAGACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTT
389 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA
* *
18641726 AAATTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCA
454 AAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* *
18641791 TGCACAAAAAAATTCAGCTAAGAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGT
519 TGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
18641856 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCACTTTAAGG
584 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
18641921 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
649 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
18641986 ATCGTATATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
714 ATCGCACATCATGTGCGCACA--CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * * * *
18642051 CGGGTTCTCCAGCGATGCTCCGGCGATGGTACCCCGACGAAGAAAAATG-CAGCACCAACACATG
776 CAGGTTCTCC-GAGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGCACATG
* * * *
18642115 GCCGAGCCCAGCATTTGCTGCCACAGCCCTCGGTCCGTCCTATCTTAGACTAGGAATGAA
838 CCCGAGCCCAGCATGTGCTGCCGCA-ACC-C--T-CGT-C-ATC-T---C-----ATG-A
* * * *
18642175 CTCCGTTGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAAACTACGAAACGAGCGTGCGGG
1 -TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
*
18642240 CGCTCAGTCC-GCCAGA-GGGCGGGATTGCGTAAGTCCGAGGATCGATCGGGTCCCCCTCTACGT
65 CGCTCAG-CCGGCCAGAGGGGCGGGA-TGCGCAAG-CCGAGGATCGATCGGGTCCCCCTCTACGT
* * * * *
18642303 GCTGCCGATCCTGCTGCCGCAATCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTTCATAT
127 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
18642368 GCCTAAGCCAACCGACGAAACGAGCGTGCGG-GTGGGCGGGCGGGCGCACTACG-TCGACAAGAG
192 GCCTAAGCCAACCGACGAAACGAGCGCG-GGCGGGGGCGGGC-GG-GCACTACGCT-GGCCAGAG
* * * *
18642431 AGACGGGATGTGCAAGCCATGGATAGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTC
253 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * *
18642496 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACATGAA
318 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * ** **
18642561 GTCTCATGGCAAGACGACTCGTTCTCCATTTTTCACAATTTTCAAAACTTTTTGTGGTTCAAGAT
383 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAT
** ** *
18642626 TTTTTAAAATTTTTTTTGAAGGTGTTTTGGCCCCAAAAATGGAAGACGTGATCCTTGTATTTTTG
448 TTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
18642691 TTGGCATGCACAAAAAAATTCATCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAA
513 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
18642756 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGCT
578 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * * *
18642821 TTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATACAAAGGCCAAGTACCG
643 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
18642886 GCACCCATCGTACATCATGTGCGCACACCCCCCTCGGCCCCCCCCGATCGTCGAAACCCTAATGG
708 GCACCCATCGCACATCATGTGCGCACA-CCCCC-CGG--CCCCCCGATCGCCGGAACCCCAATGC
* * * * * *
18642951 CACCGAG-CGGGTTCTCCGGCGATGCTCCGACGATGCTACCCCGACGAAGAAAAATG-CAGCACC
769 CGCCG-GTCAGGTTCTCC-GAGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGA-CACC
* * *
18643014 AGCACATGGCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAA
830 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GT-CA-TC---TC----A-T--G-A
* *
18643079 TGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
1 T---C-C--GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * ** * * *
18643144 AC-AGCTGCTCAGCTAGCCAGAGGGGCAGGAT-CGGCAAGCTTG-GGATCGATCGGGTTCCCCTC
60 GCGGGC-GCTCAGCCGGCCAGAGGGGCGGGATGC-GCAAGC-CGAGGATCGATCGGGTCCCCCTC
* * * * *** * *
18643206 TTCATGTTGCCGATCTTGCTGCCGCAACCCTTACTTCGATCTGATCTTAGACTGGGAATGAACTC
122 TACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * *
18643271 CGTATGCCTAAGCCAACCAACGAAATGA------------GCGAGCGGGCACTACACCGACCAGA
187 CGTATGCCTAAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCTGGCCAGA
* *
18643324 GAGAAGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
252 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * * *
18643389 TTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATA-AA-AGTCCCTTAACCCTTCACGCGA
317 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * ** ***
18643452 AGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTAGTTCAGGG
382 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GGG
* *
18643517 -TTTTTTAAAATTTTTTGGGAAGGAT-TTTTGGCCCCAAACTTGGTAG-CGCGATCCTTGTATTT
446 ATTTTTTAAAATTTTTTCGGAAGG-TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
18643579 TTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
510 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGA
* * *
18643644 AAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGC
575 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
18643709 TCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATATGGGCCAAGTA
640 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
18643774 CCAGCAGCCATCGCACATCATGTGAGCACACCCCCCGTCCCCCCTGATCGCCGAAACCCTAATGC
705 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGC
* * * *
18643839 CGCCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAG
769 CGCCGGTCAGGTTCTCCGA-GATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGACACCAG
* * * * *
18643904 CACATGCCCGAGCCCCGCATATGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGA
832 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GT-C-AT-C--TCAT-GA
* * *
18643960 CTCGGAATGAACCGTGAGACT-GGAATGAACTCCGTATGCCTAAGTCAA--CAC-AAAC--GTGT
1 -TCCG-ATG---C-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* *
18644019 GC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCAGGTCCCCCTCTAC
60 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTAC
* * * * **
18644083 GTGCTGTCGATCCTGTTGCCACAACCCTCAGTCCGGTGGGATCTTAGACTGGGAATGAACTCCGT
125 GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * *
18644148 ACGCCTAAGCCAACCGATGAAACGA------------GTGGGCGGGCACTACGCCGGCCAGAGAG
190 ATGCCTAAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCTGGCCAGAGAG
* * *
18644201 ACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
255 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
*
18644266 CATGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
320 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * *
18644331 TTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGAGATTT
385 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTT
* ** * * * * *
18644396 TTTACAATTTTTTTAGAAAGTGTTTTGGCCTCGAAC-TGGTAGACGCGATCCTTGTATTTTTTTT
450 TTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
18644460 GGCATGCACAAAAAAATTCAGCTAAAAACT-TGAAGTGTAGAAGATTTTGCGACCATTTGAAAAA
515 GGCATGCACAAAAAAATTCAGCTAAAAACTCT-AAGTGTACAAGATTTTGTGACCATTTGAAAAA
18644524 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
579 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
18644589 TAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAG
644 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * * *
18644654 TACCCATTGCGCATGATGTGCGCACACCCCCCTGGCCCCATCGATCGCCAGAACCCCAATACCGC
709 CACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCC-CCGATCGCCGGAACCCCAATGCCGC
* * * * * ** **
18644719 TGGTCAGGTTCTCGGACGATGCTCCGGTGATGGTGTCTCGGTGAAGAAAAAT-ACAGCACCAGCA
772 CGGTCAGGTTCTCCGA-GATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGCA
* * ** *
18644783 TATGCCCGAGCCTAGCATGTGCTGCCGCAACCCT--TGGT-T--TGG
834 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCATCTCATGA
* *
18644825 TTCGAT-CTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGCGTGCGGGC
1 TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * ** * *
18644889 GCTCAGTCTGTCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGTTG
66 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTG
* * * * * *
18644954 CCGATCTTGTTGCCGCAACCCTTGGTCCAGTCAGATCTTAGATTGGGAATGAACTCCGTATGCCT
131 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* ** * * * * *
18645019 AAGCCAACCGATGAAACGAATG-GGTGAGCGGGCGGGCGGGCACTATGCTGACCAGAAAGACGGG
196 AAGCCAACCGACGAAACGAGCGCGG-GCGGGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGG
* * *
18645083 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
260 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
*
18645148 CAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
325 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * **
18645213 GGCAAGACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAA
390 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAA
* * * *
18645278 AATTTTTTCGGAAGGTATTTTGTCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
455 AATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
18645343 GCACAAAAAAATTCAGCTAAAAACTCTAAGTTTACAAGA-TTTGGGACCATTTGAAAAAAGTGTC
520 GCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * ** *
18645407 CCCATTTTAGACACTTTAGTGGCTACTGGCAGCAAACCTATAAAATCTCAAATGAGCTTTAAGAG
585 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
18645472 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCA
650 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
** * * * *
18645537 TCATATATCATGTGCGCTCACCCCCCAGGCCCCTCCGATCAG-CGGAACCCCAATACCGTCGGTC
715 TCGCACATCATGTGCGCACACCCCCC-GGCCCC-CCGATC-GCCGGAACCCCAATGCCGCCGGTC
* * * * * *
18645601 GGGTTCTCCGGCGATGCTCCGGCGATGGTACCCCGACAAAGAAAAATG-CAGCACCAGCACATGG
777 AGGTTCTCC-GAGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGCACATGC
18645665 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAA
839 CCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-GT-C-ATC-T---C-----ATG-A
*
18645725 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGG
1 -TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * *
18645790 GCGCTCAGCCGGCCAGAGGAGCGGGATACGCAAGCCGAGGATCGATCGTGTCCCCCTCTACGTGC
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * * *
18645855 TGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCATATGC
129 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
** * * *
18645920 CTAAGCCAACCGACGAAACGA--GCATGC--GGGCGGGCGGGCATTATGCCGGCCAGAGAGACGG
194 CTAAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGG
* * * *
18645981 TATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
259 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
18646046 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCA
324 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * **
18646111 TGGCAAGACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTA
389 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA
* *
18646176 AAATTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCA
454 AAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
18646241 TGCACAAAAAAATTCAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGT
519 TGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
18646306 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACG
584 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
18646371 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
649 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
** * * * * *
18646436 ATCATATATCATGTGCGCTCACCCCCCAGGCCCCCCGATCAG-CAGAACCCCAATACCGTCGGT-
714 ATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATC-GCCGGAACCCCAATGCCGCCGGTC
* * * * *
18646499 GGAGTTCTCCGGCGATGCTCCGGCGATGGTACCCCGACAAAGAAAAATG-CAGCACCAGCACATG
777 AG-GTTCTCC-GAGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGCACATG
* *
18646563 GCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAA
838 CCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-GT-C-ATC-T---C-----ATG-A
* * * * *
18646624 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCTACGAAATGAGCGTACGT
1 -TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * *
18646689 GCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATGGGGTCCCCCTCTACGTGT
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * * *
18646754 TGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTTCATATGC
129 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18646819 CTAAGCCAACCGATGAAACGAGCATGCGGGCGGGTGGCGGGCGAGCACTACG-TCGGCAAGAGAG
194 CTAAGCCAACCGACGAAACGAGC--GCGGGCGGG-GGCGGGCGGGCACTACGCT-GGCCAGAGAG
* * *
18646883 ACGGGATGCGCAAGCCATGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
255 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
*
18646948 CATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGT
320 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * * ** **
18647013 CTCATGGCAAGACGACTCGTTCTCCATTTTTCACAATTTTCAAAACTTTTTGTGGTTCAAGATTT
385 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTT
* ** *
18647078 TTTAAAATTTTTT-TGAAGGTGTTTTGGCCCCAAAAATGGAAGACGTGATCCTTGTATTTTTGTT
450 TTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
18647142 GGCATGCACAAAAAAATTCATCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAAAA
515 GGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
18647207 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGCTTT
580 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * * *
18647272 AAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATACAAAGGCCAAGTACCAGT
645 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * *
18647337 ACCCATCGTACATCATGTGCGCACACCCCCCTCGGCCCCCTCGATCGTCGAAACCCCAATGGCAC
710 ACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCC-CGATCGCCGGAACCCCAATGCCGC
* * * * * *
18647402 CGATCGGGTTCTCCGGCGATGCTCCGACGATGCTACCCCGACGAAGAAAAATG-CAGCACCAGCA
772 CGGTCAGGTTCTCC-GAGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGCA
* *
18647466 CATGGCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGCA
834 CATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-GT-C-ATC-T---C-----ATG-A
*
18647531 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGG
1 -TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
*
18647596 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-ATGGATCGATAGGGT
64 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGT
18647647 GGTAGGTGGG
Statistics
Matches: 18486, Mismatches: 2961, Indels: 2139
0.78 0.13 0.09
Matches are distributed among these distances:
840 4 0.00
841 8 0.00
842 7 0.00
843 8 0.00
844 2 0.00
845 3 0.00
847 2 0.00
848 2 0.00
849 21 0.00
850 8 0.00
851 217 0.01
852 94 0.01
853 11 0.00
854 11 0.00
855 4 0.00
856 10 0.00
857 6 0.00
858 110 0.01
859 295 0.02
860 196 0.01
861 53 0.00
862 13 0.00
863 54 0.00
864 42 0.00
865 141 0.01
866 692 0.04
867 23 0.00
868 30 0.00
869 66 0.00
870 15 0.00
871 294 0.02
872 291 0.02
873 193 0.01
874 660 0.04
875 907 0.05
876 1091 0.06
877 1531 0.08
878 188 0.01
879 116 0.01
880 55 0.00
881 45 0.00
882 206 0.01
883 100 0.01
884 54 0.00
885 237 0.01
886 83 0.00
887 64 0.00
888 140 0.01
889 23 0.00
890 363 0.02
891 293 0.02
892 777 0.04
893 388 0.02
894 241 0.01
895 284 0.02
896 376 0.02
897 407 0.02
898 209 0.01
899 1036 0.06
900 953 0.05
901 433 0.02
902 194 0.01
903 202 0.01
904 479 0.03
905 445 0.02
906 948 0.05
907 359 0.02
908 245 0.01
909 464 0.03
910 13 0.00
911 3 0.00
912 6 0.00
913 11 0.00
914 10 0.00
915 5 0.00
916 13 0.00
917 6 0.00
918 4 0.00
919 4 0.00
921 5 0.00
922 5 0.00
923 14 0.00
924 20 0.00
925 15 0.00
926 11 0.00
928 6 0.00
929 2 0.00
931 9 0.00
932 2 0.00
933 3 0.00
934 1 0.00
936 1 0.00
937 6 0.00
938 3 0.00
939 1 0.00
941 3 0.00
943 1 0.00
944 4 0.00
945 8 0.00
946 5 0.00
947 2 0.00
948 1 0.00
949 1 0.00
950 6 0.00
951 2 0.00
952 5 0.00
953 5 0.00
954 2 0.00
956 2 0.00
957 3 0.00
958 1 0.00
959 3 0.00
960 8 0.00
961 8 0.00
963 6 0.00
964 13 0.00
965 1 0.00
966 2 0.00
967 5 0.00
968 5 0.00
969 1 0.00
970 4 0.00
971 5 0.00
972 8 0.00
973 5 0.00
974 2 0.00
975 14 0.00
976 12 0.00
977 10 0.00
978 3 0.00
979 8 0.00
980 7 0.00
981 12 0.00
982 11 0.00
983 8 0.00
984 9 0.00
985 12 0.00
986 5 0.00
987 6 0.00
988 13 0.00
989 4 0.00
990 12 0.00
991 5 0.00
992 6 0.00
993 4 0.00
994 4 0.00
995 9 0.00
996 13 0.00
997 7 0.00
998 2 0.00
999 1 0.00
1000 2 0.00
1001 6 0.00
1002 2 0.00
1003 6 0.00
1004 2 0.00
1005 1 0.00
1006 1 0.00
1007 12 0.00
1008 7 0.00
1009 6 0.00
1010 7 0.00
1011 5 0.00
1012 8 0.00
1013 7 0.00
1014 6 0.00
1015 18 0.00
1016 14 0.00
1017 16 0.00
1018 14 0.00
1019 4 0.00
1020 4 0.00
1021 3 0.00
1022 2 0.00
1023 3 0.00
1024 313 0.02
1025 395 0.02
1026 352 0.02
1027 537 0.03
1028 360 0.02
1029 560 0.03
1030 391 0.02
1031 398 0.02
1032 464 0.03
1033 374 0.02
1034 234 0.01
1035 326 0.02
1036 296 0.02
1037 274 0.01
1038 299 0.02
1039 332 0.02
1040 347 0.02
1041 237 0.01
1042 301 0.02
1043 279 0.02
1044 244 0.01
1045 290 0.02
1046 271 0.01
1047 224 0.01
1048 370 0.02
1049 136 0.01
1050 291 0.02
1051 164 0.01
1052 252 0.01
1053 143 0.01
1054 169 0.01
1055 454 0.02
1056 155 0.01
1057 163 0.01
1058 125 0.01
1059 212 0.01
1060 307 0.02
1061 189 0.01
1062 133 0.01
1063 95 0.01
1064 99 0.01
1065 98 0.01
1066 97 0.01
1067 127 0.01
1068 132 0.01
1069 80 0.00
1070 65 0.00
1071 89 0.00
1072 287 0.02
1073 57 0.00
1074 57 0.00
1075 69 0.00
1076 84 0.00
1077 233 0.01
1078 69 0.00
1079 78 0.00
1080 59 0.00
1081 100 0.01
1082 50 0.00
1083 270 0.01
1084 38 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (880 bp):
TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTG
CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGACGAAACGAGCGCGGGCGGGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAA
ATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
TCTCCGAGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCC
CAGCATGTGCTGCCGCAACCCTCGTCATCTCATGA
Found at i:18630460 original size:26 final size:26
Alignment explanation
Indices: 18630424--18630475 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18630414 CCGGTCCGAT
18630424 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18630450 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18630476 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18631350 original size:26 final size:26
Alignment explanation
Indices: 18631321--18631373 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18631311 CTGGTCCGAT
*
18631321 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18631347 CTTAGACTAGGAATTAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18631373 C
1 C
18631374 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18633644 original size:26 final size:26
Alignment explanation
Indices: 18633608--18633660 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18633598 CTGGTTCGAT
18633608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18633634 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18633660 C
1 C
18633661 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18635235 original size:26 final size:26
Alignment explanation
Indices: 18635206--18635258 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18635196 CCGGTGCGAT
18635206 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18635232 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18635258 C
1 C
18635259 CGATGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18635977 original size:26 final size:26
Alignment explanation
Indices: 18635941--18635991 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18635931 GGCCCGATCT
18635941 TAGACTGGGAATGAACTCCATATGCG
1 TAGACTGGGAATGAACTCCATATGCG
*
18635967 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
18635992 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCG
Found at i:18639523 original size:26 final size:26
Alignment explanation
Indices: 18639483--18639535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18639473 CTGGTTCGAT
18639483 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* *
18639509 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
18639535 C
1 C
18639536 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:18640422 original size:26 final size:26
Alignment explanation
Indices: 18640393--18640443 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18640383 CGGTCCGATC
18640393 TTAGACTCGGAATGAACTCCGTATGT
1 TTAGACTCGGAATGAACTCCGTATGT
*
18640419 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTCGGAATGAACTCCGTATG
18640444 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTCGGAATGAACTCCGTATGT
Found at i:18642187 original size:25 final size:25
Alignment explanation
Indices: 18642158--18642205 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
18642148 TCCGTCCTAT
18642158 CTTAGACTAGGAATGAACTCCGTTG
1 CTTAGACTAGGAATGAACTCCGTTG
*
18642183 CTTAGACTGGGAATGAACTCCGT
1 CTTAGACTAGGAATGAACTCCGT
18642206 ATGCCTCAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCCGTTG
Found at i:18643117 original size:26 final size:26
Alignment explanation
Indices: 18643066--18643118 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18643056 CCAGTCTGAT
*
18643066 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18643092 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18643118 C
1 C
18643119 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18645737 original size:26 final size:26
Alignment explanation
Indices: 18645708--18645760 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18645698 CCGGTCCTAT
18645708 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18645734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18645760 C
1 C
18645761 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18646573 original size:899 final size:898
Alignment explanation
Indices: 18636831--18647646 Score: 14047
Period size: 906 Copynumber: 12.1 Consensus size: 898
18636821 CCAGTCTGAT
* * * * *
18636831 CTTAGACTGGGAATGAACTCTGTATGCCTATGTCAACCCATGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * * *
18636896 CGACCAGAGGGGCGGGATGCGCAATCCGTGGATCAACCAGGTCCCCTTTTGCATGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** * *
18636961 TGCTGCCACAACCCTTAGTCAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
18637026 CCGACGAAATGAGCGGGCAGGCGGGTGGTCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAA
196 CCGACG-AA--A-CGAGCATGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
** * *
18637091 GCTGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTGTGA-ATGCCAATGCC
257 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCC
* *
18637155 ATTTTTATGGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
18637220 CGACTCGTTCTCTATTTTTCATAGTTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
386 CGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTAAAATTTTT
* *
18637285 TCGGAAGGTATTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
451 TCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18637350 AAAATTCAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18637415 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTGA
* * * *
18637480 GTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCATATA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTACA
* * * *
18637545 TCATGTGCGCTCACCCCCCCCGGCCCCCCCGATCAG-CGGAACCCCAATACCGCCGGTCGGGTTC
711 TCATGTGCG--CACACCCCCCGG-CCCCCCGATC-GCCGAAACCCCAATGCCGCCGGTCAGGTTC
*
18637609 TCCGGCGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCTGAGCC
772 TCCGGCGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCCGAGCC
*
18637674 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTTTG
837 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
* * * * *
18637736 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACAAGCATGCGGGCTCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
18637801 TGGCCAGAGGAGCAGGATACGCAAGTCGAGGATCGATCGGGTCCCCCTCTACGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * * *
18637866 TGCTACCGCAACCCTCGATGCAGTCTGATCTTAGACTTGGAATGAACTTCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
18637931 CCGACGAAATGAGCATGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
196 CCGACGAAACGAGCATGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
*
18637996 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
18638061 TATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * ** *
18638126 CGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
391 CGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTAAAATTTTTTCGGA
* * * *
18638191 AGGAT-TTTTGGTCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTAGGCATGCA-AAAAAAA
456 AGG-TGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
** * *
18638254 TTCAGCTAAAAACT-TGAAGTGTACAAGATTTTACGACCATTTCAAAAAAGGGTCCCCATTTCAG
520 TTCAGCTAAAAACTCT-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18638318 ACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTT
* * * *
18638383 CTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC-
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTACATCA
* * * * * * * *
18638447 TGTGCGCACACCGCCCGACTCCCTCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCTGAC
714 TGTGCGCACACCCCCCGGC-CCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * * * *
18638512 GATGCTCCGGCGATGGTACCCCAACGAAGAAAAATACAGCACCAGCACATGTCTGAGCCCAGCAT
778 GATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCCGAGCCCAGCAT
*
18638577 GTGCTGCCACAA-CC-C--T-CGG-----TC-----C-A-G--T---CT--G-AT-
843 GTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
* * * *
18638607 CTTAGACTGGGAATGAACTCTGTATGCCTATGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
18638672 CGACCAGAGGGGCGGGATGCGCAATCCGTGGATCAACCAGGTCCCCTTTTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
18638737 GGCTGCCACAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
18638802 CCGACGAAATGAGCGGGCAGGGGGGTGGTCGGGCACTACGTCGCCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCATGC--GGGCG-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
** * * * *
18638867 GCTGTGGATCGATAGGGTGGTATGTGGGTTTAAGCACATCTTCATATTTGTGA-ATGCCAATGTC
257 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCC
* *
18638931 ATTTTTATGGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
18638996 CGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACA-ATTCGAGATTTTTTAAAATTTC
386 CGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAG-GATTTTTTAAAATTTT
** ** * * * * *
18639060 TTCAAAAGGAATTTTGGCCCCAAACTTGGTTGACGTGATCATTTTATTTTTGTTGGCATGCATAA
450 TTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
18639125 AAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18639190 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGCG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTG
* * * **
18639254 AGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCACAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTAC
* * *
18639319 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAACGCCGTCGGTCAGGTTCTC
710 ATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
18639384 CGGCGATGCTCCGACAATGGTTCCCCGTCAAAGAAAAATGCGGCACCAGCACAT-GCCTGAGCCC
774 CGGCGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCC-GAGCCC
* * * * * * *
18639448 AGAATGTACTGCCGTAAGCCTCGGTCTGGTTCGATCTTAGACT-GGCAATGAACTCCGTATG
838 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGG-AATGAACTCCGTATG
* * * * *
18639509 CTTAGACTGGGAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCATACAGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
18639574 CAGCCAGAGGGGCAGGATGCGCAAG-CTAGGGATCGACCGGGTTCCCCTGTACATGTTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTACGTGCTGCCGATC
* ** *
18639638 TTGCTGCCGCAACCCTCACTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18639703 ACCAACGAAATGAGCGAGCGGGAGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATG
195 ACCGACG-AA--A-CGAGC---A-TGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * *
18639768 CGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAA
252 CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
* * * *
18639833 TGCCTTTTTTATGGCTTTTAAATTCGTACAAAGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
317 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * ** * * *
18639898 AAGACGACTCATTTTCTACTTTTCACGATTTTTGAAACTTTTTGCAGTTTGGGGTTTTTTAAAAT
382 AAGACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTAAAAT
* * * **
18639963 TTTTTGGGAAGGCGTTTTGGCCCCAAACTTGGTAGACACGATCCTTGTATTTTTTTGTTGGCATG
447 TTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATG
*
18640028 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
510 CACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
18640093 CCATTTCGGACACTATAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTTTTTAACGGG
575 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGG
* * * * *
18640158 GTTTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCTT
640 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCAT
* *
18640223 CGTACATCATGTGCGCACACCCCCCGTCCCCCCTGATCGCCGAAACCCCAATGCCACCGGTCAGG
705 CGTACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGAAACCCCAATGCCGCCGGTCAGG
* * * * * * *
18640288 TTCTCTGGTGATACTCCTACGATGGTGCCCCGACGAAGAAAAATGCAACACCAGCACATGCCCGA
769 TTCTCCGGCGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCCGA
* * * * *
18640353 GCCCCGCATATGCTGCCGCAAACCTCGGTCCGGTCCGATCTTAGACTCGGAATGAACTCCGTATG
834 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
* *
18640418 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
18640483 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTATGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * ** *
18640548 TGTTGCCACAACCCTCAGTTCAGTGGGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18640613 CTGATGAAACGAG-A-------GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCA
196 CCGACGAAACGAGCATGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
*
18640670 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
18640735 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * **
18640800 CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTT-GAGATTTTTTAAAATTTTTTTAG
391 CGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAG-GATTTTTTAAAATTTTTTCGG
* ** *
18640864 AAAGTGTTTT-GCCCTTGAAC-TGGTAGACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 AAGGTGTTTTGGCCC-CAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18640927 ATTCAGCTACAAACTCGAAGTGTAGAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
18640992 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTT
* * * * * *
18641057 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGTACCCATCGCACATGA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTACATCA
* * * *
18641122 TGTGCGCACACCCCCCCTGGCACCCTCGATCGCC-AGAACCCAAATACCGCTGGTCAGGTTCTCC
714 TGTGCGCACA-CCCCCC-GGC-CCCCCGATCGCCGA-AACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** * ** *
18641186 GACGATGCTCCGGCGATGGTGTCTCGGTGAAGAAAAAT--ATGACACCAGCATAT-GCCTGAGCC
775 GGCGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCA-G-CACCAGCACATGGCC-GAGCC
* * *
18641248 CAGCATGTGCTGCCGCAACCCTCGGTTCGGTTCGATCTTAGAC-AGGGAATGAACT-C--A-G
837 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTA-GGAATGAACTCCGTATG
* * *
18641306 --T--AC---------A--CC----G---AAGTCAACCCACGAAACAAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
18641349 CGGTCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGCCGGGGCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
18641414 TGTTGCCGCAACCCTTGGTCCGGTCAGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18641479 CTGACGAAACGAGCATGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
196 CCGACGAAACGAGCATGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
*
18641544 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC-TACCCAATGCCATTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT-GCCAATGCCATTT
* *
18641608 TTATGGCTTGTAAATTCATACAATGGTCCCTTCAG-CTTCCATGTGAAGTTTCATGGCAAGACGA
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT-CACGTGAAGTTTCATGGCAAGACGA
*
18641672 CTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTTAAATTTTTTCG
389 CTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTAAAATTTTTTCG
*
18641737 GAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
454 GAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
18641802 ATTCAGCTAAGAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18641867 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTT
*
18641932 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTATATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTACATCA
* * *
18641997 TGTGCGCACACCCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCGGGTTCTCCA
714 TGTGCGCACA--CCCCCCGG-CCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG
* *
18642062 GCGATGCTCCGGCGATGGTACCCCGACGAAGAAAAATGCAGCACCAACACATGGCCGAGCCCAGC
776 GCGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCCGAGCCCAGC
* * *
18642127 ATTTGCTGCCACAGCCCTCGGTCC-GTCCTATCTTAGACTAGGAATGAACTCCGT-TG
841 ATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
* * *
18642183 CTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAAACTACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
*
18642248 CC-GCCAGA-GGGCGGGATTGCGTAAGTCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGA
65 CCGGCCAGAGGGGCGGGA-TGCGCAAG-CCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGA
* * * * *
18642311 TCCTGCTGCCGCAATCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTTCATATGCCTAAGC
128 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
18642376 CAACCGACGAAACGAGCGTGCGGGTGGGCGGGCGGGCGCACTACGTCGACAAGAGAGACGGGATG
193 CAACCGACGAAACGAGCATGC----GGGCGGGC-GG-GCACTACGCCGGCCAGAGAGACGGGATG
* * * *
18642441 TGCAAGCCATGGATAGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTACGTGCCAA
252 CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
* * *
18642506 TGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACATGAAGTCTCATGGC
317 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *** * *
18642571 AAGACGACTCGTTCTCCATTTTTCACAATTTTCAAAACTTTTTGTGGTTCAAGATTTTTTAAAAT
382 AAGACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTAAAAT
** * *
18642636 TTTTTTTGAAGGTGTTTTGGCCCCAAAAATGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCA
447 TTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
18642701 CAAAAAAATTCATCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
512 CAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
18642766 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGCTTTAAGGGGGT
577 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGT
* * * *
18642831 GTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATACAAAGGCCAAGTACCGGCACCCATCG
642 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCG
* * * * *
18642896 TACATCATGTGCGCACACCCCCCTCGGCCCCCCCCGATCGTCGAAACCCTAATGGCACCGAG-CG
707 TACATCATGTGCGCACA-CCCCC-CGG--CCCCCCGATCGCCGAAACCCCAATGCCGCCG-GTCA
* *
18642960 GGTTCTCCGGCGATGCTCCGACGATGCTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCT
767 GGTTCTCCGGCGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCC
* * * **
18643025 GAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGT-CTGATCTTAGACTGGGAATGAACTCTAT
832 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCT-ATCTTAGACTAGGAATGAACTCCGT
18643089 ATG
896 ATG
* * *
18643092 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTAC-AGCTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAG
** * * * * * *
18643156 CTAGCCAGAGGGGCAGGAT-CGGCAAGCTTG-GGATCGATCGGGTTCCCCTCTTCATGTTGCCGA
65 CCGGCCAGAGGGGCGGGATGC-GCAAGC-CGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGA
* *** * *
18643219 TCTTGCTGCCGCAACCCTTACTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
128 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
18643284 CAA-C--C--AACGA-AAT--GAGCGAGCGGGCACTACACCGACCAGAGAGAAGGGATGCGCAAG
193 CAACCGACGAAACGAGCATGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * *
18643341 CCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCTT
258 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* * *
18643406 TTTTATGGCTTGTAAATTCATA-AA-AGTCCCTTAACCCTTCACGCGAAGTTTCATGGCAAGACG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** ** ** * * *
18643469 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTAGTTCAGGGTTTTTTAAAATTTTTTG
388 ACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTAAAATTTTTTC
* * *
18643534 GGAAGGAT-TTTTGGCCCCAAACTTGGTAG-CGCGATCCTTGTATTTTTGTTGGCATGGACAAAA
453 GGAAGG-TGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18643597 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18643662 GGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTGAG
* ** * *
18643727 TTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATATGGGCCAAGTACCAGCAGCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTACAT
* * *
18643792 CATGTGAGCACACCCCCCGTCCCCCCTGATCGCCGAAACCCTAATGCCGCCGGTCAGGTTCTCCG
712 CATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * * *
18643857 ACGATACTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCCGC
776 GCGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCCGAGCCCAGC
* * * * *
18643922 ATATGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTCGGAATGAA--CCG--TG
841 ATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
*
18643976 ---AGACT-GGAATGAACTCCGTATGCCTAAGTCAA--CAC-AAAC--GTGTGC-GGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
18644031 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCAGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * ** *
18644096 TGTTGCCACAACCCTCAGTCCGGTGGGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18644161 CCGATGAAACGAG--T------GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCA
196 CCGACGAAACGAGCATGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
18644218 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
18644283 TATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * ** * * **
18644348 CATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTT-GAGATTTTTTACAATTTTTTTAG
391 CGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAG-GATTTTTTAAAATTTTTTCGG
* * * * *
18644412 AAAGTGTTTTGGCCTCGAAC-TGGTAGACGCGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
455 AAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
18644476 TTCAGCTAAAAACT-TGAAGTGTAGAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAG
520 TTCAGCTAAAAACTCT-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
18644540 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTT
* * * * ** *
18644605 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGTACCCATTGCGCATGA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTACATCA
* * *
18644670 TGTGCGCACACCCCCCTGGCCCCATCGATCGCC-AGAACCCCAATACCGCTGGTCAGGTTCT-CG
714 TGTGCGCACACCCCCC-GGCCCC-CCGATCGCCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCG
** ** * ** * * * *
18644733 GACGATGCTCCGGTGATGGTGTCTCGGTGAAGAAAAATACAGCACCAGCATATGCCCGAGCCTAG
776 G-CGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCCGAGCCCAG
18644798 CATGTGCTGCCGCAACCCT---T--GG-------TT----T-GG--T----T-CG-AT-
840 CATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
* *
18644831 CTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
18644896 CTGTCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGTTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
18644961 TGTTGCCGCAACCCTTGGTCCAGTCAGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * *
18645026 CCGATGAAACGAATGGGTGAGCGGGCGGGCGGGCACTATGCTGACCAGAAAGACGGGATGCGCAA
196 CCGACGAAACG-A-GCAT--GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18645091 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
257 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
18645156 TTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18645221 GACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTT
387 GACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTAAAATTTTTT
* * *
18645286 CGGAAGGTATTTTGTCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
452 CGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18645351 AAATTCAGCTAAAAACTCTAAGTTTACAAGA-TTTGGGACCATTTGAAAAAAGTGTCCCCATTTT
517 AAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* **
18645415 AGACACTTTAGTGGCTACTGGCAGCAAACCTATAAAATCTCAAATGAGCTTTAA-GAGGGTGTGA
582 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACG-GGGTGTGA
* *
18645479 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCATATA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTACA
* * * * *
18645544 TCATGTGCGCTCACCCCCCAGGCCCCTCCGATCAG-CGGAACCCCAATACCGTCGGTCGGGTTCT
711 TCATGTGCGCACACCCCCC-GGCCCC-CCGATC-GCCGAAACCCCAATGCCGCCGGTCAGGTTCT
* *
18645608 CCGGCGATGCTCCGGCGATGGTACCCCGACAAAGAAAAATGCAGCACCAGCACATGGCCGAGCCC
773 CCGGCGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCCGAGCCC
18645673 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
838 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
*
18645734 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
18645799 CGGCCAGAGGAGCGGGATACGCAAGCCGAGGATCGATCGTGTCCCCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
18645864 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18645929 CCGACGAAACGAGCATGCGGGCGGGCGGGCATTATGCCGGCCAGAGAGACGGTATGCGCAAGCCA
196 CCGACGAAACGAGCATGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
*
18645994 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
18646059 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
18646124 CGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTAAAATTTTTTCGGA
391 CGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTAAAATTTTTTCGGA
*
18646189 AGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
456 AGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
18646254 TCAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
521 TCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
18646319 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCT
* *
18646384 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCATATATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTACATCATG
* * * * *
18646449 TGCGCTCACCCCCCAGGCCCCCCGATCAGCAG-AACCCCAATACCGTCGGT-GGAGTTCTCCGGC
716 TGCGCACACCCCCC-GGCCCCCCGATC-GCCGAAACCCCAATGCCGCCGGTCAG-GTTCTCCGGC
* *
18646512 GATGCTCCGGCGATGGTACCCCGACAAAGAAAAATGCAGCACCAGCACATGGCCGAGCCCAGCAT
778 GATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCCGAGCCCAGCAT
*
18646577 GTGCTGCCACAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
843 GTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
* * * * * *
18646633 CTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCTACGAAATGAGCGTACGTGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
18646698 CGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATGGGGTCCCCCTCTACGTGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
18646763 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTTCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18646828 CCGATGAAACGAGCATGCGGGCGGGTGGCGGGCGAGCACTACGTCGGCAAGAGAGACGGGATGCG
196 CCGACGAAACGAGCATGCGGGC--G-GGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCG
*
18646893 CAAGCCATGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
254 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
18646958 CCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTCTCATGGCAA
319 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *** * *
18647023 GACGACTCGTTCTCCATTTTTCACAATTTTCAAAACTTTTTGTGGTTCAAGATTTTTTAAAATTT
384 GACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTAAAATTT
* * *
18647088 TTT-TGAAGGTGTTTTGGCCCCAAAAATGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
449 TTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
18647152 AAAAAATTCATCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
514 AAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18647217 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGCTTTAAGGGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGT
* * * *
18647282 GAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATACAAAGGCCAAGTACCAGTACCCATCGTA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTA
* * * * *
18647347 CATCATGTGCGCACACCCCCCTCGGCCCCCTCGATCGTCGAAACCCCAATGGCACCGATCGGGTT
709 CATCATGTGCGCACA-CCCCC-CGGCCCCC-CGATCGCCGAAACCCCAATGCCGCCGGTCAGGTT
*
18647412 CTCCGGCGATGCTCCGACGATGCTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCCGAGC
771 CTCCGGCGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCCGAGC
* * *
18647477 CCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGCACTCCGTATG
836 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
*
18647540 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
18647605 CGGCCAGAGGGGCGGGATGCGCAAGCC-ATGGATCGATAGGGT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGT
18647647 GGTAGGTGGG
Statistics
Matches: 8732, Mismatches: 943, Indels: 470
0.86 0.09 0.05
Matches are distributed among these distances:
855 2 0.00
856 1 0.00
858 6 0.00
859 26 0.00
860 2 0.00
861 4 0.00
862 4 0.00
864 5 0.00
865 135 0.02
866 158 0.02
867 2 0.00
869 2 0.00
871 176 0.02
872 3 0.00
873 12 0.00
874 484 0.06
875 691 0.08
876 582 0.07
877 614 0.07
878 78 0.01
879 7 0.00
880 30 0.00
881 10 0.00
882 3 0.00
884 4 0.00
886 4 0.00
887 9 0.00
888 129 0.01
889 6 0.00
890 218 0.02
891 233 0.03
892 265 0.03
893 234 0.03
894 109 0.01
895 4 0.00
896 12 0.00
897 118 0.01
898 11 0.00
899 729 0.08
900 481 0.06
901 286 0.03
902 175 0.02
903 189 0.02
904 10 0.00
905 435 0.05
906 931 0.11
907 369 0.04
908 262 0.03
909 456 0.05
910 16 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCATGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTCTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTTAGGATTTTTTAAAATTTTTTCGGA
AGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTACATCATG
TGCGCACACCCCCCGGCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
GCTCCGACGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATGGCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTAGGAATGAACTCCGTATG
Found at i:18646636 original size:26 final size:26
Alignment explanation
Indices: 18646607--18646659 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18646597 CCGGTCCTAT
18646607 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18646633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18646659 C
1 C
18646660 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18647543 original size:26 final size:26
Alignment explanation
Indices: 18647514--18647569 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18647504 CCGGTCCTAT
*
18647514 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18647540 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18647566 CTTA
1 CTTA
18647570 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18648284 original size:25 final size:26
Alignment explanation
Indices: 18648247--18648298 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
18648237 CCGGTCTGAT
18648247 CTTAGACTAGGAATGAACTC-GTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
18648272 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
18648298 C
1 C
18648299 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:18650052 original size:26 final size:26
Alignment explanation
Indices: 18650023--18650075 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18650013 CCGGTCACAT
*
18650023 CTTAGTTTAGGAATGAACTCCGTATG
1 CTTAGATTAGGAATGAACTCCGTATG
*
18650049 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTAGGAATGAACTCCGTATG
18650075 C
1 C
18650076 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTAGGAATGAACTCCGTATG
Found at i:18652721 original size:26 final size:26
Alignment explanation
Indices: 18652692--18652744 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18652682 CCGGTTCGAT
18652692 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18652718 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18652744 C
1 C
18652745 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18652920 original size:904 final size:900
Alignment explanation
Indices: 18647606--18654553 Score: 9168
Period size: 889 Copynumber: 7.8 Consensus size: 900
18647596 GCGCTCAGCC
* * *
18647606 GGCCAGAGGGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
18647671 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGCCCCTTAAGCCTT
66 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
18647736 CACGTGAAGTTTCATAGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT-ATTTTTAAAACTTTTTACGG
* * *
18647801 -TCTGTGTTTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
195 TTC-GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
18647865 GTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACC
259 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
18647930 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACTTGTAAAATCTC
324 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
18647995 AAATGCTTTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
389 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
18648060 CAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCGGCCCCCTCGATCGACGGAACC
454 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCC-CGATCGTCGGAACC
* *
18648125 CCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAATGC
517 CCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGC
* * * * *
18648189 GGCACCAGCACATGCTCGAGCCTAGCATGTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGAC
580 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
* * *
18648254 TAGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACACATC-AAA
645 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAA
* * *
18648317 TGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCC
709 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
*
18648382 CCTCTGCGTGCT---G--CC-G-T-----AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGA
774 CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
* * *
18648435 ACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGTGGGCGGGCGGGCACTACG-T
839 ACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCGAGCACTACGCT
* * * * *
18648492 CGGCCGGAGAGACGAGATGCGCGAGCCATGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCT
1 -GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
** * * *
18648557 TCATATTTCTATGTGCCGATGCCATTTTTATTGCTTGTAAATTCATACTATGGTCCCTTAAGCCT
65 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * * *
18648622 TCACGTGAAGTTTCATGGTAAGACGACTCGTTTTTTACTTTTCACGATTTTTGAAACTTTTTGCG
130 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TATTTTTAAAACTTTTTACG
* * *
18648687 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAAAC-TGGTATACGTGATCCTT
194 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
18648751 GTA-TTTTCTTGGCATGCATAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACC
259 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
18648815 ATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTC
324 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
18648880 AAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAGATCAGGGC
389 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
18648945 CAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTGGCCCCCCCGATTGCCGGAACCC
454 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCC
* * * * *
18649010 CAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCTGGTGATGGTGCCCCGACGAAG-AAAATACGG
518 CAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGG
* * * * *
18649074 CACCAACACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTGGACTG
582 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
* * *
18649139 GGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAGCCACGAAACGA
647 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * ** *
18649204 GCGTGCAGGCGCTCAGCCGGCCAGAGGGGTGGGATGTGCAAGAAGGGGATCGATCGGGTCCCCCT
712 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* * * * * * * *
18649269 CTACGTGCTGTCTATCCTGCTACCACAACCGTCGGTCTGGT-TCAATCTTAGACTAGGAATGAAC
777 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAAC
* * * * * * *
18649333 -CATGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGACGAGCGGACGGGCACTACACC
841 TC-TGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCGAGCACTACGCT
**
18649393 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTTACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
18649458 CATATTTTTGCATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
18649523 CACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATATTTTTTAAAATTTTTTACGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATA-TTTTTAAAACTTTTTACGG
* * * * * *
18649588 CTCGAGATGTTTTAAAAATTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTG
195 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * *
18649653 TATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTGCAAAATTTTGTGACCA
260 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
18649718 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTATAAAATCTCA
325 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * **
18649783 ATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGTG
390 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
18649848 AAGTACCAGCAACCATCGCACATCATGTGGGCACACCCCCCCGACCCCCTCGCTCGTCGGAACCC
455 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGTCGGAACCC
* *
18649913 CAATGCTGCCGGTCAGG---T------T-CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGC
518 CAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
** * ** ** *
18649968 ACCAGCACATGCCCGAGCCCAGCATGTGCTATCACAACCCTCGGTCCGGTCACATCTTAGTTTAG
583 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
* * *
18650033 GAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAATGAG
648 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
18650098 CATGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGAGT-GGTCGGGTCCCCCT
713 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGGTCGGGTCCCCCT
** * * * *
18650162 CCACGTGCTGCCGATCCTGTTGCCACAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
777 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* *
18650227 CTGTATGCCTAAGCCAACCGATGAAAT----GA----GTGGGCGGGC-A--A-TACG-T
842 CTGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCGAGCACTACGCT
* * * * *
18650273 CGGCCAGCGAGACTGGATGCGTAAGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCT
1 -GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
18650338 TCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
65 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
18650403 TCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCACAACTTTTTATG
130 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT-ATTTTTAAAACTTTTTACG
* * * *
18650468 GTTTGGGATTTTTTAAAATTTTTTCAGAAGGCGTTTTGGCCCCAAACTTGGTAGATGTGATCCTT
194 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * *
18650533 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTTGACGTGTAGAAGATTTTGTGACC
259 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
18650598 ATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
324 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * ** * *
18650663 AAATGCTCTTTAAGGGGTTGCGAGTTCTTAAGGTTTTATGAGAGATAGGGGGCCAATATAAGGGC
389 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
18650728 CAAGTACCAGCACCCATCGCACATCTTCTGCGCACACCCCCTCGGCCCGCCCGATCGTCGGAACC
454 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCC-CCCGATCGTCGGAACC
* ** * * *
18650793 CTAATGCCTTCGGTCAGGTTCTCCGACGATGTTGCAGCGAAT-GTGCCCCGACGAAGAAAAATGC
517 CCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGGCG-ATGGTGCCCCGACGAAGAAAAATGC
* * **
18650857 GGCACCAGCACGTGCCTGAGCTTAGCATGTGCTGCCGCAACCCT---T---G---G-TC-----C
580 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
18650907 -----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
645 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * **
18650961 GAACATAC-GGCGCTCAGCCGGCC-GAGGGACGGGATGTGCAAGCCGAGGATCGACCGGGTCCCC
710 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* *
18651024 CTCTGGGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGAAATGAA
775 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
* * **
18651089 CTCCGTATGCCCAAGCCAACCGACGAAATGATTGAGCGGGCGGGCGGGC-AGGCACTACGCCT
840 CTCTGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCGA-GCACTACG-CT
* * ** * *
18651151 -GCTAGAGAGATGGGATAAGCAAGTCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
18651215 TATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
18651280 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TATTTTTAAAACTTTTTACGG
* * * *
18651345 TTCGAGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTG
195 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
18651410 TATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
260 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
18651475 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAACAAACCTGTAAAATCTCA
325 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
18651540 AATGCTCTTTAA-GGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
390 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* ** * *
18651604 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCACCGGAACACTA
455 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
* * * * * *
18651669 ATGCTGTCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGTGGCA
520 ATGCCGCCGGTCAGGTTC-TCCGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * *
18651734 CCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGG
584 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
* ** * *
18651799 AATTAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCGAAGTCAACCCACGAAATGAGC
649 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * *
18651864 GTGCGGGCGCTTC-GCTGACCAGAGGGGAGGGATGCGCAAGCCGAGGATGGGTCGGGTCTCCCTC
714 GTGCGGGCGC-TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * * * *
18651928 TGCATGCTGCCGATCTTGCTGCCACAACCCTCGAT-TCGGTCTGATCTTAGATTGGGAATGCACT
778 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACT
* * *
18651992 CTGTATGCCCAAGCCAAGCGACGAAACGAGCGAGCGGGCGGGCGGGCGAGCACTACGCT
842 CTGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCGAGCACTACGCT
*
18652051 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*** *
18652116 CATATTT-TGTGTGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * *
18652180 CATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACTACTTTCAAAACTTTTTGCGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TATTTTTAAAACTTTTTACGG
* * * *
18652245 TTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAACCTTGGTAGATGTGATCCTTG
195 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
18652310 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
260 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
18652375 TTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
325 TTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
18652440 AGATGCTCTTTTAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
389 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
18652505 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCAGCCGATCG-CAGGAAC
454 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC-CCCGATCGTC-GGAAC
* * * * * * **
18652569 CGCAATGCCGCCGGTAAGGTTTTTCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGC
516 CCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC
18652634 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-TCGATCTTAGA
580 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGA
18652698 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AGA
644 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-A
* * *
18652762 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGTCGGGGATCGGTCGGGTCT
708 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
* * ** * * * *
18652827 CCATCTGTGTGCTATCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATG
773 CCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
* * * * *
18652892 AACTCCGTATACATAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACG-T
838 AACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCGAGCACTACGCT
* *
18652954 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTATGTGGGTGTAGGCACATCT
1 -GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * * *
18653019 TCATATTTTTGCATGCCAATACCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCA
65 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
18653084 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAAATTTTTATG
130 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TATTTTTAAAACTTTTTACG
*
18653149 GTTCGGGATTTTTTAAAATTTCTTT-GGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCT
194 GTTCGGGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
18653213 TGTATTTTTGTTGACTTGCAC-AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAC
258 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
18653277 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCT
323 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
18653342 CAAATGCTCTTTAAGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
388 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
18653407 CCAAGTACCAGAACCCATCGCACATCCTGTGCGCACA-CCCCCGGCCCCCCGATCGTCAGAACCC
453 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCC
* * * *
18653471 CAATGCTGCCGATCAGG-T-T---C--T-CT--GGCGATGGTGCCCCTACGAAGAAAAATGCGGA
518 CAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * *
18653526 ACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGTAACTCTCGGTCCGGTCTGATCTTAGACTGG
583 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
* * *
18653591 GAATGAACTCCATATGCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACAAAACGAG
648 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
18653656 CGTGCGGGCGCTTAGCCAGCCAGAAGGGCGGGATGTGCAAGCCGGGGATCCGTTGGGTCCCCCTC
713 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* ** * * * * ** *
18653721 TGTGTGCTGCCGATCCTATTGCTGCAACACTTGATCTGGTCCAATCTTAGATTGGGAATGAACTC
778 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * *
18653786 TGTATGCCTAAGCCAACCGACGAAATGAGTGAACGGGCGGGCAGGCTG-GCACTACGCC
843 TGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGC-GAGCACTACGCT
* *
18653844 GGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
18653909 CATATTTCTACATGCCAGTGTCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTT
66 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
** * * *
18653974 CACAAGAAGTTTCATGGCAAGATGACTCGATTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
131 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT-ATTTTTAAAACTTTTTACGG
* * *
18654039 TTCGAGATTTTTTAAAATTTTTTCGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
195 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
18654104 TATTTGTT-TTGGC-TGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTATAAGATTTTGT-ACC
260 TATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * * *
18654166 ATTTGACAAAAGTGTTCCAATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTC
324 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
18654231 AAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
389 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
18654296 CAAGTTCCAGCACCCATCGCACATCAT-TGCGCACACCCCCCGGCCCCCCTGATCGTCGGAACCC
454 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTCGGAACCC
* * **
18654360 TAATGCCACCGGTCAGG---T------T-CTCCGGCGATGGTGCCCC-AGCGAAGAAAAATATGG
518 CAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGG
** * * * *
18654414 CAGTAGCACATGCCCGAGCCCAGCATGTGCTAG-CGCAACCCTAGGTCCGATCCGATCTTATACT
582 CACCAGCACATGCCCGAGCCCAGCATGTGCT-GCCGCAACCCTCGGTCCGGTCTGATCTTAGACT
* * **
18654478 GGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACG
646 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
18654543 AGCAG-GCGGGC
711 AGC-GTGCGGGC
18654554 AGGCGGGCGG
Statistics
Matches: 5336, Mismatches: 596, Indels: 256
0.86 0.10 0.04
Matches are distributed among these distances:
863 1 0.00
864 115 0.02
865 14 0.00
866 49 0.01
867 2 0.00
868 6 0.00
871 1 0.00
872 13 0.00
873 101 0.02
874 8 0.00
875 84 0.02
876 368 0.07
878 1 0.00
879 1 0.00
880 5 0.00
881 474 0.09
882 7 0.00
883 76 0.01
884 179 0.03
885 230 0.04
886 20 0.00
887 222 0.04
888 177 0.03
889 754 0.14
890 8 0.00
891 4 0.00
892 87 0.02
893 255 0.05
894 3 0.00
895 2 0.00
896 55 0.01
897 6 0.00
898 3 0.00
899 50 0.01
900 522 0.10
901 288 0.05
902 300 0.06
903 190 0.04
904 470 0.09
905 182 0.03
906 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATATTTTTAAAACTTTTTACGGT
TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAA
TGCCGCCGGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGT
ATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGGCGAGCACTACGCT
Found at i:18653617 original size:26 final size:26
Alignment explanation
Indices: 18653581--18653633 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18653571 CCGGTCTGAT
18653581 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18653607 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18653633 C
1 C
18653634 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18654499 original size:26 final size:26
Alignment explanation
Indices: 18654470--18654522 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18654460 CCGATCCGAT
* *
18654470 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
18654496 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
18654522 C
1 C
18654523 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:18655244 original size:26 final size:26
Alignment explanation
Indices: 18655208--18655260 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18655198 CCAGTCTGAT
18655208 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18655234 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18655260 C
1 C
18655261 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18657447 original size:878 final size:874
Alignment explanation
Indices: 18654496--18659205 Score: 5901
Period size: 878 Copynumber: 5.3 Consensus size: 874
18654486 ACTCCGTATG
* * *
18654496 CTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G--GGCGGGCGGGCGGG
* * *
18654561 CGGGCACCACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGT-ATAGGT-GGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
18654624 TTAGGCACATCTTCATATTTCT-GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
127 TTAGGCACATCTTCATATTTCTAG-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
18654688 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTT
* * *
18654753 GAAACCTTTTACGGTTTGGGATTTTTGAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
256 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
18654818 AGACGTGATCCTTGTATTTTTCTAGGCATGCATAAAAAAATTCAGCTCAAAACTCGAAGTGTACA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
18654883 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18654948 CCTGTAAAATCTCAAATGCTCTTTAA---GG-GTGAGTTCTCGAGGCTTGATGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
18655009 CCAACATAAGAGCCAAGTACCAGCACCCATCGCACAACGA-GTGCGCACACCCCCCCGG-CCCCC
516 CCAATATAAG-GGCAAGTACCAGCACCCATCGCACATC-ATGTGCGCACA-CCCCCCGGCCCCCC
* * * * * * *
18655072 TGATCATTGAAACCTCAATGCCGTCGGTCAAGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
578 TGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* *
18655137 CGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
643 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT---T--AG
* *
18655202 TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
703 TCTGA---T---CT--G-AT--A-TTAG-A--C-T-G---GGGAATGAACTCCGTATGCCTAAGT
*
18655267 CAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGCCGGGGAT
748 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGCCGGGGAT
* * * * *
18655332 -TGATCGGGTCCCCCTCTACGTGCTATCGATCCTGCTACTGCAACCCTAGGTTCGGTCTGAT
813 CGGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGGTCCGGTCTGAT
* * * * * * * *
18655393 CTTAGAATGGGAATGAACTCTGTATTCCTAAGCCAACTGATGAAACGAGCGGGTGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGCGGGCGGG
* * *
18655458 CACTACGCCTGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
18655523 GCACATCCTCATATTTCTACGTGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTAGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
18655588 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCA-AGATTTTTAAAA
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATA-ATTTTTGAAA
* * *
18655652 CTTTTTACGGTTCGGGATTTTTGAAAAAATTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGTAGA
260 CTTTTTACGGTTCGGGATTTTT-TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
18655716 CGTGATCCTTGTATTTTTTTTGGCAAGC-ACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
18655780 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
18655845 GTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG-CA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
18655909 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCC-GATC
519 ATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATC
* * * *
18655973 GCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
583 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* * * ** * *
18656038 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGGATGTGCTGTCGCAACCCTCGGTCTGGTCCGA
648 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTAGTCTGATCTGA
*
18656103 TCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
713 TATTAGACTGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
18656167 GCCGACCAGAGAGGCAGGATGA-GCAAGCCGGGGAT-TGATCGGGTCCCCCTCTGTGTGCTGTCA
778 GCCGGCCAGAGGGGCGGGAT-ACGCAAGCCGGGGATCGGATCGGGTCCCCCTCTGCGTGCTGTCG
* **
18656230 ATCTTGCTACCACAACCCTCGGTCCGGTCTGAT
842 ATCCTGCTACTGCAACCCTCGGTCCGGTCTGAT
* * * * * *
18656263 CTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA----CGAGCGGGTGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGCGGGCGGG
* * * * * *
18656324 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCATGAATCAATAGGGTGGTAGGTGGATTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
18656389 GCACATCTCCATATTT-TTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCT
131 GCACATCTTCATATTTCTAG-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
18656453 CTTAACCCTTCAGGTGAAGTTTCATGGCAAGACGACTCGATTTCTATTTTTCATAATTTTTTAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAA
* * * * **
18656518 GTTTTTGCGGTTCGAGG-TTTTTTAAAATTTTTTTGGAAGGAGTTGTGGCCCCAAACTTCATAGA
260 CTTTTTACGGTTCG-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
18656582 CGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
18656647 TTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
18656712 GTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATG-GGGTATAGGGGGCC
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG-ATAGGGGGCC
* *
18656776 AATATAAGGGCAGAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCTGAA
518 AATATAAGGGCA-AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGAT
* * * * *
18656841 CGTTGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGATCCAACGATGGTGCCCCGACGAA
582 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
* ** *
18656906 GAAAAATGCGGCAACAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTTAGTCCGATCTG
647 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTAGTCTGATCTG
* *
18656971 ATATTAGACTGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTC
712 ATATTAGACTGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * ** * * *
18657036 AGTCGACCAGAGGGGCAAGATACGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCA
777 AGCCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGATCGGGTCCCCCTCTGCGTGCTGTCG
* * * *
18657100 ATCCTACTGCTGCAACTCTCGGTTCGGTCTGAT
842 ATCCTGCTACTGCAACCCTCGGTCCGGTCTGAT
* * *
18657133 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAATAAGCGGGCGGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-CGGGCGGGCGGGCGGG
* ****
18657198 CGGGCATTACATTTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
18657263 TTCGACACATCTTTATATTTCTAGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTAGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
**
18657328 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTG
** *
18657393 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCATACTTGGTA
257 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
18657458 GACATGATCCATGTATTTTTGTTGGCATGCATAAAAATATTCAACTAAAAACTCGAAGTGTACAA
322 GACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
18657523 GATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCAATTGGTAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
18657588 CTGTAAAATCTCAAATGATCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
18657653 CAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCGCCAGACCCCCCTG
517 CAATATAAG-GGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCTG
* * * ** *
18657718 ATCGTCGGAACCCCAATGCCTCCGATCAGGTTCTACGGCGATGCTCCGGTGATGGTGTCCCGACG
580 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
* * * *
18657783 AAGAAAAATGTGGCACTAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC-TCGATCTGAT
645 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTAG-TCTGAT
* *
18657847 CTGATCTTAGACT-GGGAAAGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATACCTAAGT
709 CTGATATTAGACTGGGGAATGAACTCCGTATGC-----CT---AA-G---T-C--A-ACC-----
* * *
18657911 CAGCCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGG-GGGATGCGCAAGCCGGGGAT
753 CA---C--GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGCCGGGGAT
* * * ** ** * *
18657975 C-GCT-GGGTCCCCCTCTGCGTGCTGCCGATCCT-ATTGTCGCAACCCTCAATCCGGCCTGCT
813 CGGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACT-GCAACCCTCGGTCCGGTCTGAT
* * * *
18658035 CTTAGGCTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGCGGGCGGG
* * * *
18658100 CACTACGCCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTGGGTTGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
18658165 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTAGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* ** *
18658230 TTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTCAAAAA
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAAC
* * *
18658295 TTTTTACGGTTCGGGATTTTTTAAAATTTGTTCAGAAGGAGTTTTGGCCCAAAACTTGGTAGACG
261 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * ** * *
18658360 TGATCCTTGTATTTTTGTTGACTTGC-GCAAAACATTCAGCTAAAAACTCGTAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
18658424 TTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
18658489 AAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
18658554 ATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCGTACAACCCTCGGCCCCCCCGATCGT
521 ATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATCGT
* * *
18658619 CGAAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAA
585 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA
** * * *
18658684 AAATAAGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGCAACCCTCAGTCCGGTCTGATC
650 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT---T--AGTCTGATC
* **
18658749 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCA
710 -T-GA-T----AT----T-AG-A--C-T-G---GGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
18658814 CG-AATGAGTGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-TCG
755 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGATCG
* ** * * *
18658877 GGTCCCCCTTTGCGTGCTGTCGATCCTGCTACCCCAACACTCAGTCCGGTCCGAT
820 GGTCCCCCTCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGGTCCGGTCTGAT
*
18658932 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAA--A-CGGGCGGGCGGGCGGG
* * * *
18658997 CTGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
18659062 TTAGGCACATCTTCATATTTCTACGTGCCAATACC-TTCTTTATGGCTTGTAAATTCATACAATG
127 TTAGGCACATCTTCATATTTCTAGGTGCCAATGCCATT-TTTATGGCTTGTAAATTCATACAATG
* * *
18659126 GTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACAATTTTT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTT
*
18659191 GAATCTTTTTACGGT
256 GAAACTTTTTACGGT
18659206 GTCATATCGT
Statistics
Matches: 3342, Mismatches: 368, Indels: 202
0.85 0.09 0.05
Matches are distributed among these distances:
865 10 0.00
866 253 0.08
867 158 0.05
868 57 0.02
869 126 0.04
870 347 0.10
871 3 0.00
872 1 0.00
873 2 0.00
875 1 0.00
876 1 0.00
877 1 0.00
878 476 0.14
879 142 0.04
882 2 0.00
883 3 0.00
885 1 0.00
886 2 0.00
887 1 0.00
888 1 0.00
890 1 0.00
891 6 0.00
893 60 0.02
894 127 0.04
895 234 0.07
896 262 0.08
897 364 0.11
898 308 0.09
899 4 0.00
900 5 0.00
901 212 0.06
902 87 0.03
903 20 0.01
904 31 0.01
906 3 0.00
907 1 0.00
908 1 0.00
909 1 0.00
910 1 0.00
912 1 0.00
913 2 0.00
914 3 0.00
916 1 0.00
917 3 0.00
922 16 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (874 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTAGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAAC
TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATCGTC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTAGTCTGATCTGATAT
TAGACTGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTACTGCAACCCTCGGTCCGGTCTGAT
Found at i:18657890 original size:26 final size:26
Alignment explanation
Indices: 18657852--18657902 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18657842 CTGATCTGAT
*
18657852 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
*
18657878 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAAAGAACTCCGTAT
18657903 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:18658966 original size:897 final size:896
Alignment explanation
Indices: 18656974--18659205 Score: 3072
Period size: 897 Copynumber: 2.5 Consensus size: 896
18656964 CGATCTGATA
* * *
18656974 TTAGACTGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGT
1 TTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
18657039 CGACCAGAGGGGCAAGATACGCAAGCCGGGGATCG-GCTGGGTCCCCCTCTGCGTGCTGCCAATC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * *
18657103 CTACTGCTGCAACTCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * ****
18657168 ATCGATGAAATAAGCGGGCGGGCGGGTGGGCGGGCATTACATTTGCCAGAGAGACGGGATGCGCA
194 ACCGACG--A-AA-CGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
18657233 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCGACACATCTTTATATTTCTAGGTGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
18657298 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * **
18657363 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCATAATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
18657428 TCGGAAGGAGTTTTGGCCCCATACTTGGTAGACATGATCCATGTATTTTTGTTGGCATGCATAAA
450 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAA
* * *
18657493 AATATTCAACTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
18657558 CAGACACTTTAATGGCAATTGGTAGCAAACCTGTAAAATCTCAAATGATCTTTAAGAGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGA
* *
18657623 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
18657688 TCATGTGCGCACACCCGCCAGACCCCCCTGATCGTCGGAACCCCAATGCCTCCGATCAGGTTCTA
709 TCATGTGCGCACACCC-CCCGGCCCCCCTGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTC
** * * *
18657753 CGGCGATGCTCCGGTGATGGTGTCCCGACGAAGAAAAATGTGGCACTAGCACATGCCCGAGCCCA
773 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCA
* * *
18657818 GCATGTGCTACCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAAAGAACTCCGTATGC
838 GCATGTGCTGCCGCAACCCTCG-TCCG-TCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
18657879 TTAGACTAGGAATGAACTCCGTATACCTAAGTCAGCCCATGAAACGAGCGTACGGGCGCTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* *
18657944 GGCCAGAGGGG-GGGATGCGCAAGCCGGGGATCGCT-GGGTCCCCCTCTGCGTGCTGCCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCT
** ** * * * * *
18658007 ATTGTCGCAACCCTCAATCCGGCCTGCTCTTAGGCTGGGAATGAACTCCATATGCCTAAGCCAAC
131 GCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
18658072 CGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCAT
196 CGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
18658137 GGATCGATAGGGTGGTGGGTTGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
261 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* *
18658202 ACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTC
326 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
18658267 GTTTTCTATTTTTCATAATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTGTTCAGAA
391 GTTTTCTATTTTTCATAATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * * ** *
18658332 GGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGACTTGC-GCAAAACATT
456 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATT
* *
18658396 CAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACA
521 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
18658461 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTT
586 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTC
*
18658526 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGT
650 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * *
18658591 GCGTACAACCCTCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGAT
715 GCGCACACCCCCCGGCCCCCCTGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * *
18658656 GCTCCGACGATGGTGCCCCGACGAAGAAAAATAAGGCACCAGCACATGCTCGAGCCTAGCATGTG
780 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTG
18658721 CTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
845 CTGCCGCAACCCTC-GTCC-GTCTGATCTTAGACTGGGAATGAACTCCGTATGC
** * * * *
18658775 TTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACG-AATGAGTGTGCGGGCACTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* *
18658839 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGCGTGCTGTCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * *
18658904 GCTACCCCAACACTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
18658969 CGACAAAACGAGCGGGCGGGCGGGCGGGCTGGCACTACGTCGGCCAGAGAGACGGGATACGCAAG
196 CGACGAAACGAGCAGGCGGGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
18659034 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATACC-T
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
*
18659098 TCTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGAC
322 T-TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18659163 GAATCGTTTTCTATTTTTCACAATTTTTGAATCTTTTTACGGT
386 GACTCGTTTTCTATTTTTCATAATTTTTAAAACTTTTTACGGT
18659206 GTCATATCGT
Statistics
Matches: 1171, Mismatches: 145, Indels: 26
0.87 0.11 0.02
Matches are distributed among these distances:
895 30 0.03
896 210 0.18
897 297 0.25
898 273 0.23
899 3 0.00
900 3 0.00
901 186 0.16
902 84 0.07
903 19 0.02
904 59 0.05
905 7 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATAATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCTGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGTCCGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:18659837 original size:58 final size:58
Alignment explanation
Indices: 18659679--18659838 Score: 268
Period size: 58 Copynumber: 2.8 Consensus size: 58
18659669 TCTTGTGTAG
** *
18659679 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTAAACTTATTTTTAA
*
18659737 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATATTTTTTTAAACTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTTTAAACTTATTTTTAA
18659795 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTT
18659839 TGAAATTTTG
Statistics
Matches: 95, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
57 3 0.03
58 89 0.94
59 3 0.03
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTAAACTTATTTTTAA
Found at i:18659893 original size:11 final size:11
Alignment explanation
Indices: 18659871--18659931 Score: 61
Period size: 11 Copynumber: 5.5 Consensus size: 11
18659861 AAGAAAACAG
18659871 AATAATAAAAAA
1 AATAA-AAAAAA
18659883 AATAAAAAAAA
1 AATAAAAAAAA
*
18659894 AAT-AAAGAAA
1 AATAAAAAAAA
* *
18659904 AGTAAAACAAA
1 AATAAAAAAAA
* *
18659915 AATGAAAATAA
1 AATAAAAAAAA
18659926 AATAAA
1 AATAAA
18659932 GATAAAAAGA
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
10 8 0.20
11 27 0.68
12 5 0.12
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.13
Consensus pattern (11 bp):
AATAAAAAAAA
Found at i:18659909 original size:21 final size:20
Alignment explanation
Indices: 18659874--18659931 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
18659864 AAAACAGAAT
18659874 AATAAAAAAAATAAAAAAAA
1 AATAAAAAAAATAAAAAAAA
* *
18659894 AATAAAGAAAAGTAAAACAAA
1 AATAAA-AAAAATAAAAAAAA
18659915 AATGAAAATAAAATAAA
1 AAT-AAAA-AAAATAAA
18659932 GATAAAAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.12
Consensus pattern (20 bp):
AATAAAAAAAATAAAAAAAA
Done.