Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 106 of 195
Found at i:18786807 original size:13 final size:12
Alignment explanation
Indices: 18786762--18786803 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
18786752 CTTTGTATTA
*
18786762 TTTTTTTTCTCT
1 TTTTTTTTTTCT
*
18786774 TTTTTTTATT-T
1 TTTTTTTTTTCT
*
18786785 TTTTTTCTTTCT
1 TTTTTTTTTTCT
18786797 TTTTTTT
1 TTTTTTT
18786804 CTTTTGTATT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (12 bp):
TTTTTTTTTTCT
Found at i:18786942 original size:31 final size:32
Alignment explanation
Indices: 18786826--18786959 Score: 107
Period size: 31 Copynumber: 4.2 Consensus size: 32
18786816 ATGTGTTTTA
*
18786826 TTATTTATTATTATTA-TATGTATATTTTATT
1 TTATTTATTATTATTATTATGTATATTGTATT
* * *
18786857 TTATTT-TTTTTGTTAATATGTATA-TGTATTT
1 TTATTTATTATTATTATTATGTATATTGTA-TT
* * *
18786888 TTATATAGTTATATATTTATTAT-TATATTGCAAT
1 TTATTTA-TTAT-TA-TTATTATGTATATTGTATT
* *
18786922 TTATTTATTATTATTATTATTTTATATTTTA-T
1 TTATTTATTATTATTATTA-TGTATATTGTATT
18786954 TTATTT
1 TTATTT
18786960 TTGTATATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
30 10 0.12
31 27 0.33
32 10 0.12
33 14 0.17
34 12 0.15
35 9 0.11
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.66
Consensus pattern (32 bp):
TTATTTATTATTATTATTATGTATATTGTATT
Found at i:18786970 original size:18 final size:19
Alignment explanation
Indices: 18786935--18786975 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
18786925 TTTATTATTA
18786935 TTATTATTTTATATTTTAT
1 TTATTATTTTATATTTTAT
18786954 TTATT-TTTGTATA-TTTAT
1 TTATTATTT-TATATTTTAT
18786972 TTAT
1 TTAT
18786976 CTAATTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (19 bp):
TTATTATTTTATATTTTAT
Found at i:18787000 original size:28 final size:26
Alignment explanation
Indices: 18786967--18787032 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 26
18786957 TTTTTGTATA
*
18786967 TTTATTTATCTAATTATATATCTGTTAT
1 TTTATTTATCT-ATAATATATCT-TTAT
*
18786995 TTTATTTATCCTATAATATATCTTTTT
1 TTTATTTAT-CTATAATATATCTTTAT
18787022 TTTATTTATCT
1 TTTATTTATCT
18787033 GTTCTAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 2 0.06
27 12 0.34
28 19 0.54
29 2 0.06
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTATTTATCTATAATATATCTTTAT
Found at i:18787444 original size:31 final size:31
Alignment explanation
Indices: 18787408--18787466 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
18787398 CCGATGAATT
* * * *
18787408 TTTTGACGAAATTTGAATTTTTCGGTGAAAA
1 TTTTGACCAAACTTGAAGTTTCCGGTGAAAA
18787439 TTTTGACCAAACTTGAAGTTTCCGGTGA
1 TTTTGACCAAACTTGAAGTTTCCGGTGA
18787467 CCTGCCCAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (31 bp):
TTTTGACCAAACTTGAAGTTTCCGGTGAAAA
Found at i:18787910 original size:12 final size:11
Alignment explanation
Indices: 18787883--18787930 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 11
18787873 CTCCAGGTTT
18787883 TTTTTTTTTTGAA
1 TTTTTTTTTT--A
18787896 TTTTTTTGTTTA
1 TTTTTTT-TTTA
18787908 TTTGTTTTTTTA
1 TTT-TTTTTTTA
*
18787920 TTTTTTATTTA
1 TTTTTTTTTTA
18787931 GATTAGGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 7 0.22
12 11 0.34
13 11 0.34
14 3 0.09
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.81
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:18787915 original size:24 final size:24
Alignment explanation
Indices: 18787879--18787925 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
18787869 GCCGCTCCAG
* *
18787879 GTTTTTTTTTTTTTGAATTTTTTT
1 GTTTATTTGTTTTTGAATTTTTTT
**
18787903 GTTTATTTGTTTTTTTATTTTTT
1 GTTTATTTGTTTTTGAATTTTTT
18787926 ATTTAGATTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.83
Consensus pattern (24 bp):
GTTTATTTGTTTTTGAATTTTTTT
Found at i:18787993 original size:29 final size:27
Alignment explanation
Indices: 18787958--18788031 Score: 94
Period size: 29 Copynumber: 2.7 Consensus size: 27
18787948 ATTCTTTTCA
*
18787958 TCTTTATTTTTTTATTTTTGTTTGACTTT
1 TCTTTATTTTTTTATTTTTATTT-A-TTT
18787987 TCTTTATTTTTTTATTTTTATTTATTT
1 TCTTTATTTTTTTATTTTTATTTATTT
* * *
18788014 TTTTTATTATTCTATTTT
1 TCTTTATTTTTTTATTTT
18788032 CTTTAAATGA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 18 0.44
28 1 0.02
29 22 0.54
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (27 bp):
TCTTTATTTTTTTATTTTTATTTATTT
Found at i:18788116 original size:60 final size:60
Alignment explanation
Indices: 18788052--18788335 Score: 455
Period size: 60 Copynumber: 4.8 Consensus size: 60
18788042 AAATTAAAAC
* *
18788052 TTTCAAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-AAAT
1 TTTC-AAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
*** * *
18788112 TTTC-AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAG
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
* *
18788171 TTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
*
18788231 TTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
18788291 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTT
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTT
18788336 TTTTGAGGAA
Statistics
Matches: 206, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
58 44 0.21
59 7 0.03
60 155 0.75
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (60 bp):
TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
Found at i:18788351 original size:150 final size:147
Alignment explanation
Indices: 18788185--18788482 Score: 488
Period size: 150 Copynumber: 2.0 Consensus size: 147
18788175 AAAAAAAATA
*
18788185 TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAATATTTTT
1 TTTTTGAGAAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAA-ATTTTT
* * *
18788250 AGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAATATTTTTAAGGA
65 AAGGAAAAGTTGAAAATATCAATTTTCCTTGGAAAT-AAATTTTC-AAAAAAAGATTTTTAAGGA
18788315 AAAGTTGAAAGTATCAATTT
128 AAAGTTGAAAGTATCAATTT
*
18788335 TTTTTGAGGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAAATTTTTA
1 TTTTTGAGAAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAAATTTTTA
* ** *
18788400 AGGAAAAGTTGAAAATATCAATTTTCCTTTGAAATAAATTTTCAAAAAGGGATTTTTGAGGAAAA
66 AGGAAAAGTTGAAAATATCAATTTTCCTTGGAAATAAATTTTCAAAAAAAGATTTTTAAGGAAAA
18788465 GTTGAAAGTATCAATTT
131 GTTGAAAGTATCAATTT
18788482 T
1 T
18788483 CCTTGGAAAT
Statistics
Matches: 139, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
147 36 0.26
148 8 0.06
149 39 0.28
150 56 0.40
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (147 bp):
TTTTTGAGAAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAAATTTTTA
AGGAAAAGTTGAAAATATCAATTTTCCTTGGAAATAAATTTTCAAAAAAAGATTTTTAAGGAAAA
GTTGAAAGTATCAATTT
Found at i:18788365 original size:29 final size:30
Alignment explanation
Indices: 18788305--18788365 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
18788295 AAAAAAAATA
*
18788305 TTTTTAAGGAAAAGTTGAAAGTATCAATTT
1 TTTTTAAGGAAAAGTTGAAAGCATCAATTT
*
18788335 TTTTTGAGGAAAAGTTGAAAGCATCAATTT
1 TTTTTAAGGAAAAGTTGAAAGCATCAATTT
18788365 T
1 T
18788366 CCTTGGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.39
Consensus pattern (30 bp):
TTTTTAAGGAAAAGTTGAAAGCATCAATTT
Found at i:18788374 original size:28 final size:29
Alignment explanation
Indices: 18788311--18788374 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 29
18788301 AATATTTTTA
* **
18788311 AGGAAAAGTTGAAAGTATCAATTTTTTTT
1 AGGAAAAGTTGAAAGCATCAATTTTCCTT
18788340 GAGGAAAAGTTGAAAGCATCAATTTTCCTT
1 -AGGAAAAGTTGAAAGCATCAATTTTCCTT
18788370 -GGAAA
1 AGGAAA
18788375 TCAAATTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 5 0.16
30 26 0.84
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (29 bp):
AGGAAAAGTTGAAAGCATCAATTTTCCTT
Found at i:18788413 original size:89 final size:90
Alignment explanation
Indices: 18788252--18788424 Score: 321
Period size: 90 Copynumber: 1.9 Consensus size: 90
18788242 ATATTTTTAG
*
18788252 GGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAATATTTTTAAGGAAA
1 GGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAATATTTTTAAGGAAA
*
18788317 AGTTGAAAGTATCAATTTTTTTTGA
66 AGTTGAAAATATCAATTTTTTTTGA
18788342 GGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAA-ATTTTTAAGGAAA
1 GGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAATATTTTTAAGGAAA
18788406 AGTTGAAAATATCAATTTT
66 AGTTGAAAATATCAATTTT
18788425 CCTTTGAAAT
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
89 31 0.38
90 50 0.62
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.35
Consensus pattern (90 bp):
GGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAATATTTTTAAGGAAA
AGTTGAAAATATCAATTTTTTTTGA
Found at i:18788457 original size:117 final size:118
Alignment explanation
Indices: 18788335--18788602 Score: 416
Period size: 117 Copynumber: 2.3 Consensus size: 118
18788325 GTATCAATTT
* *
18788335 TTTTTGAGGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTC-AAAAAAAA-ATTTT
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAAAATATTTT
* * *
18788398 TAAGGAAAAGTTGAAAATATCAATTTTCCTTTGAA-ATAAATTTTCAAAAAGGGA
66 TAAGGAAAAGTTGAAAATATCAAGTTTCC-TTAAACATAAATTTTCAAAAA-AGA
18788452 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAAAATATTTT
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAAAATATTTT
* *
18788517 TGAGGAAAAGTTGAAAATATCAAGTTTCCTTAAACATAAATTTTCAAAAAATA
66 TAAGGAAAAGTTGAAAATATCAAGTTTCCTTAAACATAAATTTTCAAAAAAGA
* *
18788570 TTTTTGGGGAAAAGTTGAAAGTATCAGTTTTCC
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
18788603 CTACACAAAA
Statistics
Matches: 139, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
117 48 0.35
118 44 0.32
119 47 0.34
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (118 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAAAATATTTT
TAAGGAAAAGTTGAAAATATCAAGTTTCCTTAAACATAAATTTTCAAAAAAGA
Found at i:18788467 original size:58 final size:59
Alignment explanation
Indices: 18788335--18788602 Score: 355
Period size: 58 Copynumber: 4.6 Consensus size: 59
18788325 GTATCAATTT
* *
18788335 TTTTTGAGGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAAAA
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAATA
* * * ***
18788394 TTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTTGAAAT-AAATTTTCAAAAAGGGA
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAATA
*
18788452 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAAAATA
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC--AAAAAAATA
* * *
18788513 TTTTTGAGGAAAAGTTGAAAATATCAAGTTTCCTT-AAACAT-AAATTTTC-AAAAAATA
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAA-ATCAAATTTTCAAAAAAATA
* *
18788570 TTTTTGGGGAAAAGTTGAAAGTATCAGTTTTCC
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
18788603 CTACACAAAA
Statistics
Matches: 183, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
57 37 0.20
58 52 0.28
59 44 0.24
60 9 0.05
61 41 0.22
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (59 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAAAATA
Found at i:18791819 original size:21 final size:21
Alignment explanation
Indices: 18791790--18791830 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
18791780 ACAATGGATG
18791790 ATGAAAAAAAAAAAAAAAGAA
1 ATGAAAAAAAAAAAAAAAGAA
* **
18791811 ATGAGAAAATGAAAAAAAGA
1 ATGAAAAAAAAAAAAAAAGA
18791831 TATTCAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (21 bp):
ATGAAAAAAAAAAAAAAAGAA
Found at i:18793149 original size:42 final size:41
Alignment explanation
Indices: 18793074--18793371 Score: 456
Period size: 42 Copynumber: 7.1 Consensus size: 41
18793064 ATGATTGTCA
18793074 AGGAGCAATTTACTTTTCAAAGTTTCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG--TCGTGGTGCCTCTGTTTAG
18793115 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTT-TCAAAGTCGTGGTGCCTCTGTTTAG
*
18793157 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGCTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
18793198 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTGTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
18793239 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTTAG
18793281 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
* * *
18793323 AGGAGCAATTTAGGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTT-TCAAAGTCGTGGTGCCTCTGTTTAG
*
18793366 AAGAGC
1 AGGAGC
18793372 TTTGGTAAAA
Statistics
Matches: 240, Mismatches: 10, Indels: 12
0.92 0.04 0.05
Matches are distributed among these distances:
40 4 0.02
41 94 0.39
42 111 0.46
43 30 0.12
44 1 0.00
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:18793240 original size:124 final size:124
Alignment explanation
Indices: 18793074--18793371 Score: 465
Period size: 124 Copynumber: 2.4 Consensus size: 124
18793064 ATGATTGTCA
*
18793074 AGGAGCAATTTACTTTTCAAAGTTTCGT-TGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAG
1 AGGAGCAATTTATTTTTCAAAG--TCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAG
18793138 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGCTTAG
64 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGCTTAG
* *
18793198 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTGTAGAGGAGCAATTTACTTTTTCAAAGT
1 AGGAGCAATTTATTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGT
*
18793263 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGCTTAG
* * *
18793323 AGGAGCAATTTAGGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAAGAGC
1 AGGAGCAATTTA--TTTTTCAAAGTCG-TGTGCCTCTGTTTAGAGGAGC
18793372 TTTGGTAAAA
Statistics
Matches: 160, Mismatches: 8, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
122 4 0.03
124 91 0.57
125 35 0.22
127 29 0.18
128 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.36
Consensus pattern (124 bp):
AGGAGCAATTTATTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGTC
GTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGCTTAG
Found at i:18793415 original size:11 final size:10
Alignment explanation
Indices: 18793378--18793409 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
18793368 GAGCTTTGGT
18793378 AAAAA-AAAA
1 AAAAACAAAA
18793387 AAAAACAAAA
1 AAAAACAAAA
18793397 AAAAACAAAA
1 AAAAACAAAA
18793407 AAA
1 AAA
18793410 TGACAATGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 5 0.23
10 17 0.77
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAACAAAA
Found at i:18793700 original size:3 final size:3
Alignment explanation
Indices: 18793692--18793745 Score: 53
Period size: 3 Copynumber: 18.7 Consensus size: 3
18793682 AGTTATATAT
*
18793692 TTA TTA TTA -TA TTA TAA TTTA TTTA TTA TTA TTA TTA TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA
18793737 -TA TT- TTA TT
1 TTA TTA TTA TT
18793746 TATTTTTGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
2 8 0.18
3 30 0.68
4 6 0.14
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:18793714 original size:22 final size:23
Alignment explanation
Indices: 18793689--18793734 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
18793679 TATAGTTATA
18793689 TATTTATTATTA-TATTATAATT
1 TATTTATTATTATTATTATAATT
*
18793711 TATTTATTATTATTATTATTATT
1 TATTTATTATTATTATTATAATT
18793734 T
1 T
18793735 TATATTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
TATTTATTATTATTATTATAATT
Found at i:18793730 original size:31 final size:33
Alignment explanation
Indices: 18793612--18793749 Score: 99
Period size: 31 Copynumber: 4.3 Consensus size: 33
18793602 ATGTGTTTTA
* *
18793612 TTATTTATTAT-TATTA-TATGTATATTTTTAT
1 TTATTTATTATATATTATTATGTATATTATAAT
* * * * * * *
18793643 TTTTTTCTTTTCTGTTAATATGTATATGTAT-TT
1 TTATTTATTATATATTATTATGTATAT-TATAAT
*
18793676 TTATATAGTTATATATTTATTAT-TATATTATAAT
1 TTATTTA-TTATATA-TTATTATGTATATTATAAT
* *
18793710 TTATTTATTAT-TATTATTAT-TATTTTATATT
1 TTATTTATTATATATTATTATGTATATTATAAT
18793741 TTATTTATT
1 TTATTTATT
18793750 TTTGTATTTT
Statistics
Matches: 84, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
31 33 0.39
32 6 0.07
33 21 0.25
34 18 0.21
35 6 0.07
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.67
Consensus pattern (33 bp):
TTATTTATTATATATTATTATGTATATTATAAT
Found at i:18793814 original size:26 final size:28
Alignment explanation
Indices: 18793756--18793821 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
18793746 TATTTTTGTA
*
18793756 TTTTTATTTAT-CTAATTATATATCTGT
1 TTTTTATTTATCCTAATAATATATCTGT
18793783 TATTTTATTTATCCT-ATAATATATCT-T
1 T-TTTTATTTATCCTAATAATATATCTGT
18793810 TTTTTATTTATC
1 TTTTTATTTATC
18793822 TGTTCTAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
26 11 0.31
27 3 0.08
28 20 0.56
29 2 0.06
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.64
Consensus pattern (28 bp):
TTTTTATTTATCCTAATAATATATCTGT
Found at i:18794783 original size:10 final size:10
Alignment explanation
Indices: 18794768--18794824 Score: 64
Period size: 10 Copynumber: 5.9 Consensus size: 10
18794758 TTCATCTTTA
18794768 TTTTTTATTT
1 TTTTTTATTT
*
18794778 TTTTTTACTT
1 TTTTTTATTT
*
18794788 TTCTTTA--T
1 TTTTTTATTT
18794796 TTTTTTATTT
1 TTTTTTATTT
*
18794806 TTATTTATTT
1 TTTTTTATTT
*
18794816 ATTTTTATT
1 TTTTTTATT
18794825 ATTCTATTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 7 0.18
10 32 0.82
ACGTcount: A:0.14, C:0.04, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:18794788 original size:22 final size:22
Alignment explanation
Indices: 18794762--18794829 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 22
18794752 ATTCTTTTCA
18794762 TCTTTATTTTTTATTTTTTT-T
1 TCTTTATTTTTTATTTTTTTAT
*
18794783 TAC-TT-TTCTTTATTTTTTTAT
1 T-CTTTATTTTTTATTTTTTTAT
18794804 T-TTTATTTATTTATTTTTATTAT
1 TCTTTATTT-TTTATTTTT-TTAT
18794827 TCT
1 TCT
18794830 ATTTTCTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
20 15 0.39
21 7 0.18
22 10 0.26
23 5 0.13
24 1 0.03
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (22 bp):
TCTTTATTTTTTATTTTTTTAT
Found at i:18794798 original size:18 final size:18
Alignment explanation
Indices: 18794777--18794820 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
18794767 ATTTTTTATT
*
18794777 TTTTTTTACTTTTCTTTA
1 TTTTTTTACTTTTATTTA
*
18794795 TTTTTTTATTTTTATTTA
1 TTTTTTTACTTTTATTTA
18794813 TTTATTTT
1 TTT-TTTT
18794821 TATTATTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTTACTTTTATTTA
Found at i:18794812 original size:28 final size:28
Alignment explanation
Indices: 18794761--18794834 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
18794751 TATTCTTTTC
*
18794761 ATCTTTA-TTTTTTATTTTTTTTTACTTT
1 ATCTTTATTTTTTTATTTTTATTTA-TTT
18794789 -TCTTTATTTTTTTATTTTTATTTATTT
1 ATCTTTATTTTTTTATTTTTATTTATTT
* * *
18794816 ATTTTTATTATTCTATTTT
1 ATCTTTATTTTTTTATTTT
18794835 CTTTAAATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
27 9 0.22
28 31 0.77
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (28 bp):
ATCTTTATTTTTTTATTTTTATTTATTT
Found at i:18794826 original size:13 final size:14
Alignment explanation
Indices: 18794764--18794834 Score: 76
Period size: 14 Copynumber: 5.1 Consensus size: 14
18794754 TCTTTTCATC
18794764 TTTATTT-TTTATT
1 TTTATTTATTTATT
* *
18794777 TTTTTTTACTTT-TC
1 TTTATTTA-TTTATT
*
18794791 TTTATTTTTTTATT
1 TTTATTTATTTATT
18794805 TTTATTTATTTATT
1 TTTATTTATTTATT
18794819 TTTA-TTATTCTATT
1 TTTATTTATT-TATT
18794833 TT
1 TT
18794835 CTTTAAATGA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
13 14 0.29
14 31 0.65
15 3 0.06
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTATTTATTTATT
Found at i:18795006 original size:60 final size:59
Alignment explanation
Indices: 18794861--18795435 Score: 782
Period size: 60 Copynumber: 9.7 Consensus size: 59
18794851 AAACTTTGAA
* * *
18794861 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATAAATTTTC
*** *
18794920 -AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAAT-AAATTTTC
*
18794979 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGAATCAATTTTCCTTGGAAATCAAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAAT-AAATTTTC
* *
18795039 AAAAAAATTACTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
1 AAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGGAAAT-AAATTTTC
* * * *
18795099 CAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATAAATTTTC
* * *
18795158 GAAAAATAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATTAAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAA-TAAATTTTC
* * * *
18795218 AAAAAAAATATTTTTAACGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATAAATTTTC
*** * * *
18795277 -AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATGAATTTTCCTTGGAAATCAAAGTTTA
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAAT-AAATTTTC
* **
18795336 AAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATAAATTTTC
*
18795395 --AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
18795436 CTACACAAAA
Statistics
Matches: 457, Mismatches: 52, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
57 39 0.09
58 86 0.19
59 83 0.18
60 248 0.54
61 1 0.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.35
Consensus pattern (59 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATAAATTTTC
Found at i:18795204 original size:119 final size:117
Alignment explanation
Indices: 18794861--18795435 Score: 893
Period size: 118 Copynumber: 4.9 Consensus size: 117
18794851 AAACTTTGAA
18794861 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTCAAAAAG
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTCAAAAA-
*
18794926 GGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
65 AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
* *
18794979 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGA-ATCAATTTTCCTTGGAAATCAAATTTTCAAAA
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAA-ATATCAATTTTCCTTAGAAAT-AAATTTTCAAAA
* *
18795043 AA-ATTACTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
64 AAGATT--TTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
* * *
18795099 CAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCGAAAAA
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTC-AAAAA
* *
18795164 TAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATTAAATTTTC
65 -AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
*
18795218 AAAAAAAATATTTTTAACGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTCAAAAAG
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTCAAAAA-
* * *
18795283 GGATTTTTGAGGAAAAGTTGAAAGTATGAATTTTCCTTGGAAATCAAAGTTTA
65 AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
* *
18795336 AAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTCAAAAAA
* *
18795401 TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
66 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
18795436 CTACACAAAA
Statistics
Matches: 419, Mismatches: 29, Indels: 19
0.90 0.06 0.04
Matches are distributed among these distances:
117 35 0.08
118 161 0.38
119 123 0.29
120 96 0.23
121 1 0.00
122 3 0.01
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.35
Consensus pattern (117 bp):
AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTCAAAAAA
GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
Found at i:18797387 original size:26 final size:26
Alignment explanation
Indices: 18797358--18797410 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18797348 CCAATCTGAT
18797358 CTTAGACT-AGGAATGAACTCTGTATG
1 CTTAGA-TGAGGAATGAACTCTGTATG
*
18797384 CTTAGATGGGGAATGAACTCTGTATG
1 CTTAGATGAGGAATGAACTCTGTATG
18797410 C
1 C
18797411 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATGAGGAATGAACTCTGTATG
Found at i:18798721 original size:899 final size:869
Alignment explanation
Indices: 18795909--18801010 Score: 5046
Period size: 899 Copynumber: 5.7 Consensus size: 869
18795899 ACGTTATGAC
* *
18795909 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTC
* * * *
18795974 CCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAA
* * ** * *
18796039 ACTTTTTACAGTTTAGGATTTTTTAAAATTGTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
131 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG-TGG-GTTTTGGCCCCAAACTTGGTAGA
* * * *
18796104 CGTGATCCTTGT-ATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAAT
194 CGTGATCCTTGTAATTTTT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
** * * * *
18796168 ATTTTGTGACCAACTGAAAAAATTATCCCTATTTCAGACACTTTAATGGCTACTA-GCAGCAAAC
258 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTAC-AGGCAGCAAAC
*
18796232 CAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
322 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
18796297 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCCG
387 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-GCACA-CCCCCCGGCCCCCCCG
* * * * * * *
18796362 ATTGCCTGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGTCG
450 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTACCCCGACG
* * * * * *
18796427 AAGAAAAATACGACACCAGCACATGCCCAAGCCTAGCATGTGC-A-GGCAAAACCCTTGGTCCG-
515 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGC--AACCCTCGGTCCGA
* * * * * *
18796489 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGC
578 CTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCGTGCGGGC
* * * * * *
18796554 GCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG-GCAGGGTC-CCC-CT-----CT
643 GCTCCGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATC-GGGTCACCCTCTGAGAGCT
* * * * *
18796611 GC-AT--GCTGCCACAACCCTTGATCTAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTA
707 CCGATCCGCTGCCGCAACCCTCGGT-TCGTCTGATCTTAGATTGGGAATGAACT-CGTATGCCTA
* * * * * * * * *
18796673 ACCCAATC-GACAAAATG-AGCGGGC--TGGCGGGCGGGCCCTACGCTGGCCAGAGGGACGGGAT
770 AGCCAA-CAGACGAAACGTA-CGGGCAAGGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGAT
*
18796734 GCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTT
833 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18796771 AGGCACATCTTCATATTTCTGCAAGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTC
* * *
18796836 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAA
* * * * * * *
18796901 ACTTTTTGAGATCCGGGATTTTTTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAAACTTGGCAGA
131 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG-TGG-GTTTTGGCCCCAAACTTGGTAGA
* *
18796966 CGTGATCCTTGT-ATTTTTGTTGGCATGCATAAAAAACTTCAACTAAAAACTCGAAGTGTACAAG
194 CGTGATCCTTGTAATTTTT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
18797030 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACA
258 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACC
* *
18797095 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGA-TTCCTCAAGGTTTGATGAGGGATAGGGGGC
323 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
18797159 CAATATAAGGGACAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCTCGGCCCTCTCG
387 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-GCACACCCCC-CGGCCCCCCCG
* * * * * * * *
18797224 ATCGTCGGAACCCTAATACTGCCGGTCAAGTTCTCCAACGATGCTCTGGCGATGGTGCCCCGACG
450 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTACCCCGACG
* * *
18797289 AAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAATC
515 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGT-C---C
* * *
18797354 TGATCTTAGACTAGGAATGAACTCTGTATGCTTAGATGGGGAATGAACTCTGTATGCCTAAGTCA
576 -GA-C-T---C------TG-A-TCT-TA-G---A-CT-GGGAATGAACTCCGTATGCTTAAGTCA
* * * * * ** * * *
18797419 ACGCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATTG
620 ACCCACGAAACAAGCGTGCGGGCGCTCCGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCG
* * * * * * * * * * * *
18797484 GTCGGGTCCCCCTCTGTGTGTTACTGATCCTACTACCACAACCCTC-ATACCGGTCTAATCTTAG
685 ATCGGGTCACCCTCTGAGAGCT-CCGATCC-GCTGCCGCAACCCTCGGT-TC-GTCTGATCTTAG
* *
18797548 ACTGGGAATGAACTCCGTATGCCTAAGCTAACCA-ACGAAACG-AGCGGGC--GGGCGGGTGGGC
746 ATTGGGAATGAACT-CGTATGCCTAAGCCAA-CAGACGAAACGTA-CGGGCAAGGGCGGGTGGGC
* * * * * * *
18797609 ACTACGCC-GCCAAAGAGATGGGCTACGTAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTT
808 ACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18797670 AGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTC
* *
18797735 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAA
* ** * ** *
18797800 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTATGAAAGGAGTTTTAGCCCCAAACTTGGTAGA
131 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTG-GTGG-GTTTTGGCCCCAAACTTGGTAGA
* * *
18797865 TGTGATCCTTGTAATTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGA
194 CGTGATCCTTGTAATTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
18797930 TTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGAAACTTTAATGGCTACAGTCAGCAAACCT
259 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACCT
18797995 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
324 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
18798060 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-GCACACCCCCCGGCCCCCCCGATCG
389 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGCACACCCCCCGGCCCCCCCGATCG
* * ** * * *
18798124 TCGGAACCCGAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAACGAAGA
454 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTACCCCGACGAAGA
* * * * *
18798189 AAAATGTGGTACCAACACATGCCCGAGCCCAGCATGTGCTATCGTAACCCTTGGTCCGA-TCTGA
519 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCGACTCTGA
*
18798253 TCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
584 TCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCCG
* * *
18798318 CCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATTGGGTCACCCTCTGCGTGCTACCGATC
649 CCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCGGGTCACCCTCTGAGAGCT-CCGATC
18798383 CAGCTGCCGCAACCCTCGGTTCAGTCTGATCTTAGATTGGGAATGAACTCAGTATGCCTAAGCCA
713 C-GCTGCCGCAACCCTCGGTTC-GTCTGATCTTAGATTGGGAATGAACTC-GTATGCCTAAGCCA
* *
18798448 ACAGACGAAACGTACGGGCGGAAGGGCGGGTGGGCACTATGCCGGCCAGAAAGACGGGATGCGTA
775 ACAGACGAAACGTACGGGC--AAGGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGATGCGCA
18798513 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
838 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
18798545 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTC
** * *
18798610 CCTTAAGCCTTCACGTGAAAATTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAA
* * * *
18798675 ACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGCCCCCAAACTTGGTAGA
131 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG-TGG-GTTTTGGCCCCAAACTTGGTAGA
* * *
18798740 TGTGATCCTTGT-ATTTGTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
194 CGTGATCCTTGTAATTT-TTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * * * *
18798804 ATTTTGTGACCATTTTAAAAAGGTGTCCCAATTTCA-AACCCTTTAATGGCTACTGACAGCAAAC
258 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAA-ACTTTAATGGCTACAGGCAGCAAAC
* ** *
18798868 CTGTAAAATCTCAAATGCTCATTAAGGGGCCGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
322 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
18798933 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGAGCACACCCCCCGACCCCCTCGA
387 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-GCACACCCCCCGGCCCCCCCGA
* ** * * * **
18798998 TCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGGTGATGCTCTGGCGATGGTGCCCCGGTGA
451 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTACCCCGACGA
* * * **
18799063 AGAAAAATACGTCACCAGCACATGCCCAAGCCCAGCATGTGCTATCGCAACCCTCGGTCCGGTTC
516 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCGACTC
* * * ***** * * *
18799128 -GATCTTCGACTGGGAATGAACTCCATATGCTT-AGACTGGGAATGAACTCCATATGCTTAGACT
581 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAA--ACA-A-GCGT-G-C-
* *** * * * * * * *
18799191 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAACG
639 GGG--CG--CTCCGCCGGC-CAGA--GGG---G----CGGGATGCGTAAG-C--C-GA-GGATCG
* ** * * ** * * * * ** *
18799256 AGCGTACGGGCATTCAATCGGCTAGAGGGGTGGGATGCGCAAGCCAAGGATCGATCAGGTCCTCT
685 A---T-CGGG---TC-ACCCTCT-GAGAGCTCCGATCCGC-TGCC--GCAACCCTC-GGT--TCG
* * ** *
18799321 TCTGTTTGCTGTTGATCTTGCTACCA-CAACCCTCG-AT-CC--AGTCCAATCTTAGACTGGGAA
735 TCTG-AT-CT-TAGA--TTGGGA--ATGAA--CTCGTATGCCTAAG-CCAA-C--AGAC---G-A
* * * **
18799381 TGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGTGGGCGGGTGGGCAATACGTTGGCC
783 --AA---CGTA---C---G------G--G-CA--A------GGGCGGGTGGGCACTATGCCGGCC
** ** *
18799446 AGAGAGAATGGATGCGCAAGTTGTGGATCGATAGGTTGGTAGGTGGGTTT
820 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18799496 ATGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTC
* * * *
18799561 CCATGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAA
* * * * *
18799626 ACTTTTTGGGGTTCAGGATTTTTTAAAATTCTTTCGGAAAGGGTTTTGGCCCCAAACTTGGTAGA
131 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG--TGGGTTTTGGCCCCAAACTTGGTAGA
* * * *
18799691 CATGATCCTTG-AATTTTTGGTGGTATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAG
194 CGTGATCCTTGTAATTTTT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
18799755 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACC
258 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACC
18799820 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
323 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
18799885 ACTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
388 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-GCACACCCCCCGGCCCCCCCGAT
* * * * * *
18799950 CGTCGGAACCCCAATGCCGTCC-GTCAGGTTTTTCGACGATGCTCCGATGATAGTACCCCGGCAA
452 CGTCGGAACCCCAATGCCG-CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTACCCCGACGA
* * *
18800014 AGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTTCT-GCTGCAACCCTCTGTCCATTC
516 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATC-GCAACCCTC-G-------
* * * * *
18800078 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATAAACTTCGTATACCTAAGTCA
572 -G-TC-----C-------G-ACTCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCA
* * *
18800143 ACCCACGAAACGAGCGTGCGGGCGCTCCGCCGGCCAGAGGGGCGGGCTGCGCAAGCCGAGGATCG
620 ACCCACGAAACAAGCGTGCGGGCGCTCCGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCG
* * * * * * ** * * **
18800208 GTCGGGTCCCCCTCT-ATAAGCTGTCGATCTTGCTACCATAACCCTCAGTCCGATCCAATCTTAG
685 ATCGGGTCACCCTCTGA-GAGCT-CCGATC-CGCTGCCGCAACCCTCGGTTCG-TCTGATCTTAG
* * * * * *
18800272 ACTGGGAATGAACTTCGTATGCCTAAGCCAACTGACCAAATG-AGCGGGC--GGGCGAGCGGGCA
746 ATTGGGAATGAAC-TCGTATGCCTAAGCCAACAGACGAAACGTA-CGGGCAAGGGCGGGTGGGCA
* * * * *
18800334 CTATGCCAGCCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTCGGAGTGTTT
809 CTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
18800395 AGGCATATCTTCATATTTCTGGC-TTCCAATGCCATTTTTATGCCTTTTAAATTCATTCAATGGT
1 AGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGT
* * *
18800459 CCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGA
65 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAA
* * *
18800524 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGTCACAAACTTGGTAG
130 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG-TGG-GTTTTGGCCCCAAACTTGGTAG
* * * * *
18800589 GCGTGATCCTTGTATTTTTTTTTGGCAAGCAGAAAAAAATTCAGCAAAAAACTCGAAGTGTACAA
193 ACGTGATCCTTGTA-ATTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
18800654 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAAC
257 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAAC
* *
18800719 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGAC
322 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * **
18800784 CAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCTCACACCCCCC-GAACCCCCGA
387 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-GCACACCCCCCGGCCCCCCCGA
* *
18800848 TCGTCGGAACCCCAATGCCGCCGATCAGGTTCTTCGACGATGCTCCGACGATGGTACCCCGACGA
451 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTACCCCGACGA
* * * * * *
18800913 AGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCGTCGG-CCCAGTC
516 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCGACTC
18800977 TGATCTTAGACTGGGAATGAACTCCGTATGCTTA
581 TGATCTTAGACTGGGAATGAACTCCGTATGCTTA
18801011 GACTGGGAAT
Statistics
Matches: 3551, Mismatches: 490, Indels: 387
0.80 0.11 0.09
Matches are distributed among these distances:
861 7 0.00
862 501 0.14
863 1 0.00
864 2 0.00
866 1 0.00
867 1 0.00
869 3 0.00
870 170 0.05
871 3 0.00
872 1 0.00
873 26 0.01
874 27 0.01
875 441 0.12
876 9 0.00
877 164 0.05
878 5 0.00
879 4 0.00
880 4 0.00
881 4 0.00
882 3 0.00
883 5 0.00
885 2 0.00
886 1 0.00
887 7 0.00
888 93 0.03
889 4 0.00
890 6 0.00
891 2 0.00
892 1 0.00
893 1 0.00
895 2 0.00
896 117 0.03
897 22 0.01
898 7 0.00
899 779 0.22
900 310 0.09
901 6 0.00
902 5 0.00
905 1 0.00
906 3 0.00
909 4 0.00
910 12 0.00
911 4 0.00
912 6 0.00
913 3 0.00
914 4 0.00
915 3 0.00
916 2 0.00
917 5 0.00
918 5 0.00
919 7 0.00
920 4 0.00
921 7 0.00
922 3 0.00
923 1 0.00
924 2 0.00
925 1 0.00
927 4 0.00
929 1 0.00
930 4 0.00
932 1 0.00
933 8 0.00
934 4 0.00
935 6 0.00
936 5 0.00
937 5 0.00
938 2 0.00
939 2 0.00
940 2 0.00
941 2 0.00
942 6 0.00
943 3 0.00
944 9 0.00
945 5 0.00
948 4 0.00
949 1 0.00
950 2 0.00
951 563 0.16
952 13 0.00
953 1 0.00
954 1 0.00
956 1 0.00
957 8 0.00
960 1 0.00
961 3 0.00
964 3 0.00
966 4 0.00
967 7 0.00
969 1 0.00
971 3 0.00
972 1 0.00
973 2 0.00
974 5 0.00
975 2 0.00
976 3 0.00
977 22 0.01
978 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (869 bp):
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAA
ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGTGGGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTAATTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGCACACCCCCCGGCCCCCCCGATCGTC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTACCCCGACGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCGACTCTGATC
TTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCCGCC
GGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCGGGTCACCCTCTGAGAGCTCCGATCCGC
TGCCGCAACCCTCGGTTCGTCTGATCTTAGATTGGGAATGAACTCGTATGCCTAAGCCAACAGAC
GAAACGTACGGGCAAGGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTT
Found at i:18799171 original size:26 final size:26
Alignment explanation
Indices: 18799135--18799235 Score: 184
Period size: 26 Copynumber: 3.9 Consensus size: 26
18799125 TTCGATCTTC
18799135 GACTGGGAATGAACTCCATATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
18799161 GACTGGGAATGAACTCCATATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
*
18799187 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
*
18799213 GACTGGGAATGAACTCCGTATGC
1 GACTGGGAATGAACTCCATATGC
18799236 CTAAGTCAAC
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
GACTGGGAATGAACTCCATATGCTTA
Found at i:18801017 original size:26 final size:26
Alignment explanation
Indices: 18800981--18801033 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18800971 CCAGTCTGAT
18800981 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18801007 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18801033 C
1 C
18801034 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18801761 original size:26 final size:26
Alignment explanation
Indices: 18801725--18801777 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18801715 ACGATCCCAT
*
18801725 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18801751 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18801777 C
1 C
18801778 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18802640 original size:26 final size:26
Alignment explanation
Indices: 18802611--18802663 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18802601 CTGATCCAAT
18802611 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
18802637 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
18802663 C
1 C
18802664 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:18803080 original size:886 final size:888
Alignment explanation
Indices: 18801007--18803310 Score: 3129
Period size: 888 Copynumber: 2.6 Consensus size: 888
18800997 ACTCCGTATG
* * *
18801007 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGGCGGG
* * *
18801072 CACTACGCCGGCCAGAGAGATGGTATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
65 CACTAGGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
18801137 GCACATCTTCATATTTCTG-CATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATAGTCC
130 GCACATCTTCATATTTCTGTC--GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
18801201 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
193 CTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * *
18801266 CTTTTTGGGGTTCA-GGATTTTTTAAAATTCTTTCGGAAAGGGTTTTGGCCCCAAACTTGGTAGA
257 CTTTTTGCGGTT-AGGGATTTTTTAAAATT-TTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
* ** * * * *
18801330 CATGATCCTTGAATTTTTGTTGGTATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
320 CGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGA
*
18801395 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
385 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCT
* * * *
18801460 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGATTTGATGGGGGATAGAGGGGC
450 GTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGAGGGCC
18801524 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCTTCCGGCCACCC
514 CAATATAAGGGCCAAGTACCAGCACCCATCG-ACA-----T----ACACCCCC-TCCGGCCACCC
* ** ** * * *
18801589 TGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTTCCCCAG
568 TGATCGCTCCAACCCCAAAACCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAG
* * * * * *
18801654 TGAAGAATAATACGGCATCAGCACATGCCTGAGCCCAGCATGTGTTGTCGCAACCCTTGGTACGA
633 CGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGATACGA
* *
18801719 TCCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCCAAGT
698 TCCAATCTTAGACTGGGAATGAAATCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCCAAGT
* * * * *
18801784 CAACCCACGAAACGAGCGTGCGGGCATTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
763 CAACCCACGAAACAAACGTGCGGGCACTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * *
18801849 CGGCCGGGTCCCCCTTTACATGCTGCCGATCCTGCTGCCGCATCCCTCAGTCCGGTCCAAA
828 CGGCCGGGTCCCCCTCTACATGCTGCCGATCCTACCGCCACATCCCTCAGTCCGGTCCAAA
*
18801910 CTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGG
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGG
* * * *
18801974 GCACT-GCGCCGGCCAGAGAGACGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGCGTAT
64 GCACTAG-GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
18802038 AGGCACATCTTCATATTTCTGCATC-CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
128 AGGCACATCTTCATATTTCTG--TCGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
18802102 CCCTTAAGCCTTCACGTGAAATTTCATGCCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAA
191 CCCTTAAGCCTTCACGTGAAGTTTCATG-CAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
* * * *
18802167 AACTTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTTGAAAGACGTTTTGGCCCCAAACCTGGTA
255 AAC-TTTTTGCGGTTAGGGATTTTTTAAAATTTTTTGGAAAGA-GTTTTGGCCCCAAACTTGGTA
* * *
18802232 GATGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTTAGTTGAAAACTCGAAGTGTACAA
318 GACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAA
*
18802297 GATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAAC
383 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAAC
*
18802362 CTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG-GGGC
448 CTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGAGGGC
*
18802426 CCAATATAAGGGCC-AGCTACCAGCACCCATCG-CA-A-A-CCCC-CCGGCC-CCCTGATTGCTC
513 CCAATATAAGGGCCAAG-TACCAGCACCCATCGACATACACCCCCTCCGGCCACCCTGATCGCTC
* * *
18802484 CAACCTCAAAATCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCC-GACGAAGAAA
577 CAACCCCAAAACCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAG-CGAAGAAA
*
18802548 AATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG-CTGTAACCCTCGAT-CTGATCCAAT
641 AATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTC-GCAACCCTCGATAC-GATCCAAT
* **
18802611 CTTAGACTGGGAATGAAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCC
704 CTTAGACTGGGAATGAAATCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCCAAGTCAACCC
* * ** * * *
18802676 ATGAAATAAACGTGCGGGTGCTCAACCGACCAGAGGGGTGGGCTGCGCAAGCCGGGGATCGGTCG
769 ACGAAACAAACGTGCGGGCACTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG
* * * *
18802741 GGTCCCCCTCTGCATGCTGCCGATCCTACCGCCACA-CCGTC-GATCCGGTTCAAC
834 GGTCCCCCTCTACATGCTGCCGATCCTACCGCCACATCCCTCAG-TCCGGTCCAAA
* *
18802795 CTTAG-CTGGGAATGAACTCTGTATGCCTAGGCCAACCGACGAAATGAACAGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACG---A-GC-GGCGGGCGGG
* * *
18802859 CGGGCACTAGGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGT
61 CGGGCACTAGGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
18802924 TTAGGCACATCTTCATATTTTTGTGCGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGG
126 TTAGGCACATCTTCATATTTCTGT-CGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18802989 TCCCTTAAGCCTTCACGTGATGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTA
190 TCCCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
* * * * *
18803054 AAACTTTTTACGGTTAGGGATTTTTAAAAAAATTTTTGGAATGAGTTTTGGACCCAAACTTGGTA
254 AAACTTTTTGCGGTTAGGGATTTTT-TAAAATTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTA
* *
18803119 GACGTGATCCTTGTATTTTTT-TTGGCGTGCACTAAAAAAATTTAGCTAAAAACTCGAAGTGCAC
318 GACGTGATCCTTGT-TTTTTTGTTGGCATGCAC-AAAAAAATTTAGCTAAAAACTCGAAGTGTAC
* *
18803183 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAATGGCTACTGGTAGGC
381 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-AATGGCTACTGGCAGGA
* * *
18803248 AACCTGCAAAATCTCGAATGCCTTTTAAGGGGGTGTGAGTTCTCAGAGGTTTGATGAGGGATA
445 AACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATA
18803311 CGAGCCGATA
Statistics
Matches: 1249, Mismatches: 122, Indels: 73
0.86 0.08 0.05
Matches are distributed among these distances:
884 38 0.03
885 22 0.02
886 259 0.21
887 68 0.05
888 282 0.23
889 61 0.05
890 19 0.02
891 1 0.00
901 2 0.00
902 3 0.00
903 275 0.22
904 218 0.17
906 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
ACTAGGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGTCGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
TTGCGGTTAGGGATTTTTTAAAATTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTTTTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAAAA
TCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGAGGGCCCAATATA
AGGGCCAAGTACCAGCACCCATCGACATACACCCCCTCCGGCCACCCTGATCGCTCCAACCCCAA
AACCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATACGGCAC
CAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGATACGATCCAATCTTAGACTGGGA
ATGAAATCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCCAAGTCAACCCACGAAACAAACG
TGCGGGCACTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTA
CATGCTGCCGATCCTACCGCCACATCCCTCAGTCCGGTCCAAA
Found at i:18807537 original size:876 final size:872
Alignment explanation
Indices: 18805043--18809766 Score: 5345
Period size: 861 Copynumber: 5.4 Consensus size: 872
18805033 ATTTTGTGAC
* * *
18805043 TGGCTACTGGCAACAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
1 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
18805108 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
66 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
* * * *
18805173 ACCCCCCCGGCCCCCCGGATCGTCAGAACCCAAATCTCG-TCGATCAGGTTCTCCGACGATGCTT
131 ACCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGTCGCT-G-TCAGGTTCTCCGACGATGCTC
* * * * *
18805237 TGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGC
193 CGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGT
* * * *
18805302 CGTAACCCTCGGTTTGGTTTGATCTTTGAATGGGAATGAACTCTGTATGGTTAGAATGGGAATGA
258 CGCAACCCTC------G---G-TC-------CGG--T---C-C-G-AT-CTTAGACTGGGAATGA
* * * * **** * * *
18805367 ACT-CTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGTTAGCCAGAAGGATGA
297 ACTCCT-TATGCTTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGTGG
* * * *
18805431 GATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCTGTTGATCCTGCTGCCACAACCCT
361 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCC-
* * * * * * *
18805496 TGGTCTGATCTAATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCG
425 TCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAACG
* * * * *
18805561 GGCGAGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
489 GGTGGGC-GGC-AGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * *
18805626 GGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
552 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
* * * *
18805691 AATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGCTTCATGGCAAGGCGCCTCGTTTTCTATT
617 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
18805756 TTTCATGATTTTTGCAAA-ATTTCACAGTTC-GAGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
682 TTTCACGATTTTTG-AAACTTTTTACGGTTCTG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * *
18805819 AGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTT-TTGGCATGCACAAAAAAATTTAGCTAAA
745 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAA
* *
18805883 AACTAGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
810 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
18805946 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTTGAGTTT
1 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
18806011 TGAAGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG--C
66 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
* ** * * *
18806074 A----------CCCTCGATCG-CTAAAACCCTAATGTCGC---C-GG---T-C-ATG-TTCTCCG
131 ACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGTCGCTGTCAGGTTCTCCGACGATGCTCCG
* * * *
18806118 ATGATGATGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCG
195 ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
* *
18806183 CAACCCTCGGTCTGG-CTCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGAATGAA
260 CAACCCTCGGTCCGGTC-CGATCTTAGACTGGGAATGAACT-C-----C-T----T----ATG--
* * * * * * *
18806247 CTATGTATGCCTAAGTCAACCTACAAAACGAGCGTGCGGGCGCTCAACCGACCAGAAGGGCGAGA
307 C------T---TAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGA
* * * * * * * *
18806312 TGCGTAAGCC-GGGTTCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGTAACCCTCG
363 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC-
* *
18806376 GTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCT-A---AACG--G----G--CGGGT
427 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAAACGAACGGGT
* * *
18806429 GGGCAG-A-CGTGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGG
492 GGGCGGCAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
18806492 TAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
557 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
18806557 ATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTTGTTTTCTATTTTTCA
622 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
18806622 CGATTTTTTAAACTTTTTACGGTT-TGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
687 CGATTTTTGAAACTTTTTACGGTTCT-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * * * * *
18806686 AAACTTGGTAGACGTGATCTTTTTCTTTTTGTTGG-ATGCATAAAAAAATTCCGCTAAAAAGTCG
751 AAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
18806750 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTAAGACACTTTAA
816 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * *
18806807 TTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTATGAGGGGGCGTGAGTTCTCGAGGTT
1 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* ** * **
18806872 TGATGGGGGATAGGAAGCCAATAGAAGGGCCAAGTACTGGCACCCATCACACATCATGTGCGCAC
66 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
* * *
18806937 ACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGTCTGTAAGGTTCTCTGATGATGCTCCG
131 ACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCG-CTGTCAGGTTCTCCGACGATGCTCCG
* **
18807002 ACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
195 ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
* * * *
18807067 TAACCTTCGGTCCTGTCCGATCTTAGACCGGGAATGAACTCCTTATGCTTAAGTCAACCCACGAA
260 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAAGTCAACCCACGAA
* * * *
18807132 ACGAGTGTGCAGGCGATCAACTGGCCAGAGGGGTGGGATGCGTAAGCCGGGGATCGATCGGGTCC
325 ACGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* * * * ** *
18807197 CTCTCTGCGTGCTGTCGATCCTGTTGCCGCAACCTTCAGTCCGGTCCAATCTTAGACTAGGAATG
390 CCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC-GTCTGGTCTGATCTTAGACTGGGAATG
* * * * * **
18807262 AACTTCGTATGCCTAAGCTAATCGATGAAATGAATGGGTGGGCGAGCATGCGGGCACTACGTTTG
454 AACTCCGTATGCCTAAGCCAA-CGACGAAACGAACGGGTGGGCG-GCA-GCGGGCACTACGTCGG
* *
18807327 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATGTTCA
516 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
18807392 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCA
581 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
18807457 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-ATTTTTTGAAACTTTTTACGGT
646 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGT
* *
18807521 TCTGCATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGT
710 TCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * *
18807586 ATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAGCTCGAAGTGTACAAGATTTTATGACCAT
775 ATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
18807651 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
840 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
18807684 TGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
1 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
18807749 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCGATCGCACATCATGTGTGCAC
66 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
*** *
18807814 ACCCCCCCGGCCTCTTGGATCGTCGGAACCCCAAT-TC-CATCGGTCAGGTTCCCCGACGATGCT
131 ACCCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGTCGC-T--GTCAGGTTCTCCGACGATGCT
* * * * *
18807877 CC-AGCGATGGTGCCTCGACGATGAAAAATGCAGCACCAGCACGTGCCCGAGCCCAGCATGTGCT
192 CCGA-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
18807941 GTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGTTTAGATTCGGAAT
256 GTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC-----------TT----AT
* * * *
18808006 GAACTCCTTATGACTAAGTCAAACCACGAAGCAAGTGTACGGGCGCTCAACCGGCCAGAGGGGTG
306 G-----C---T---TAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGTG
* * * * * **
18808071 GGATGTGCAAACCGGGGATC-AGTCGAGTCCCCCTCTGCGTGCTATCGACCCTGCTGCCATAACC
360 GGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACC
* * *
18808135 CTCGGCTTGG-CTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCGAACTGACGAAACGAA
424 CTCGTC-TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAA
* * * * *
18808199 CGGGCGGGCGGACAGGCGAGCACTACGTCGGCCAGAGAGATGAGATGCGCAAGCAGTGGATCGAT
487 CGGGTGGGCGG-CA-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
18808264 AGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTACGTGTCAATGCCATTTTTTTGGCTTG
550 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
*
18808329 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTA
615 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * *
18808394 TTTTTCACGATTTTTGAAACTTGTTACGGTTCAGGATTTTGTAAAATTTTTTCGAAAGGAG-TTT
680 TTTTTCACGATTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
** * *
18808458 GG-CTAAAACCTTGGTAGACCTGATCCTTGTATTTTTCTTGGCATGCACAAAAGAATTCAGCTAA
745 GGCCCCAAA-CTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAA
* * * * *
18808522 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGGCACTTTAC
809 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
18808586 TGGCTACTGGTAGCGAACCTGTAAAATTTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTT
1 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
18808650 TGATAAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
66 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
* * * * * *
18808715 ACCCCCCCGGCCCCTTCCAATCGTTGGAACCCCAAT-TCCACCAGTTAGGTTCCCCGACGATGCT
131 ACCCCCCCGGCCCC--CCGATCGTCGGAACCCCAATGT-C-GCTGTCAGGTTCTCCGACGATGCT
* * *
18808779 CC-AGCGATGGTGCCCCGACGATGAAAAATACGGCACCAGCACGTGCCCGAGCCCATCATGTGCT
192 CCGA-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
18808843 GTCGCATCCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATGAC-TAAGTCAACCC
256 GTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG-CTTAAGTCAACCC
* * * * * ** *
18808907 ATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGCCT
320 ACGAAACGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCG
* ** * * * *
18808972 GTTCCCCCTCTGCGTGCTACCGATCTTGCTGTCGCAACCCTCGGCTCGGTCTGATCATAGACTGG
385 GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGTCT-GGTCTGATCTTAGACTGG
*
18809037 GAATGAACTCCGTATGCCTAAGCCAACTGACGAAACG-A---GTGGGCGG--GCGGGCACTATGT
449 GAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAACGGGTGGGCGGCAGCGGGCACTACGT
** * **
18809096 CGATCGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTGCATCT
513 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
18809161 TCATATTTCTACATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
578 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
18809226 TCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTTTATTTTTCGCGATTTTTGAAACTTTTTACA
643 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * * * *
18809291 ATTCGGGATTTTGTAAAATTTTTTCGGAAGGAGTTTTGG--CTAAATGCTCGGTAGACGTGATCC
708 GTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA--CTTGGTAGACGTGATCC
*
18809354 TTGTATTTTTCTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
771 TTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
18809419 CCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAC
836 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
18809456 TGGTTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
1 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* ** * * * *
18809521 TAATGAGGGATAGGGGGTGAATATAAGGGCCAACTACCAGCACCCATCCCACATAATGTGCGTAC
66 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
*
18809586 ACCCCCCCGGCCCCCCGATCG-CAGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCC
131 ACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGTCGCT-GTCAGGTTCTCCGACGATGCTCC
* * *
18809650 GACGATGGTGCCCCTG-CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTAT
194 GACGATGGTGCCCC-GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGT
* * * * * *
18809714 CGTAACCCTCGGTCCGATCTGATCTTAGATTGGGAATGAACTTCGTATGCTTA
258 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATGCTTA
18809767 GACTGGGAAT
Statistics
Matches: 3301, Mismatches: 387, Indels: 300
0.83 0.10 0.08
Matches are distributed among these distances:
853 16 0.00
854 2 0.00
855 1 0.00
856 3 0.00
858 54 0.02
859 77 0.02
860 5 0.00
861 440 0.13
862 7 0.00
863 4 0.00
864 4 0.00
865 7 0.00
866 1 0.00
867 2 0.00
868 5 0.00
869 368 0.11
870 162 0.05
871 92 0.03
872 8 0.00
873 33 0.01
874 5 0.00
875 3 0.00
876 365 0.11
877 262 0.08
878 212 0.06
879 124 0.04
880 2 0.00
881 2 0.00
882 1 0.00
883 5 0.00
884 98 0.03
885 3 0.00
886 1 0.00
887 3 0.00
889 3 0.00
890 17 0.01
891 6 0.00
893 3 0.00
898 1 0.00
900 1 0.00
901 100 0.03
902 294 0.09
903 397 0.12
904 101 0.03
905 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
ACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCTGTCAGGTTCTCCGACGATGCTCCGA
CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAAGTCAACCCACGAAA
CGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
CCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGTCTGGTCTGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACGACGAAACGAACGGGTGGGCGGCAGCGGGCACTACGTCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCTGGA
TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
CTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAA
Found at i:18807996 original size:26 final size:26
Alignment explanation
Indices: 18807967--18808017 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18807957 CGGTCTGATC
*
18807967 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTCGGAATGAACTCCGTATGT
* *
18807993 TTAGATTCGGAATGAACTCCTTATG
1 TTAGACTCGGAATGAACTCCGTATG
18808018 ACTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (26 bp):
TTAGACTCGGAATGAACTCCGTATGT
Found at i:18809773 original size:26 final size:26
Alignment explanation
Indices: 18809737--18809789 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18809727 CCGATCTGAT
*
18809737 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
18809763 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18809789 C
1 C
18809790 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18810529 original size:26 final size:26
Alignment explanation
Indices: 18810478--18810530 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18810468 TCGGTCCGAT
*
18810478 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
*
18810504 CTTAGACTAGG-AATGAACTTCATATG
1 CTTAGACT-GGCAATGAACTCCATATG
18810530 C
1 C
18810531 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:18812296 original size:26 final size:26
Alignment explanation
Indices: 18812260--18812312 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18812250 TCGGTCCGAT
18812260 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
18812286 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18812312 C
1 C
18812313 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18813229 original size:26 final size:25
Alignment explanation
Indices: 18813163--18813241 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 25
18813153 CTGGTCTGAT
18813163 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
***
18813189 CTTAGACTCAAAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTC-GTATG
18813215 CTTAGACTGGGAATGAACGTCGTATG
1 CTTAGACTGGGAATGAAC-TCGTATG
18813241 C
1 C
18813242 CTAAGTCAAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.02
26 42 0.93
27 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:18817894 original size:880 final size:877
Alignment explanation
Indices: 18809763--18820507 Score: 11906
Period size: 876 Copynumber: 12.0 Consensus size: 877
18809753 ACTTCGTATG
* * * * *
18809763 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGAGGGTGGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* *
18809828 CAGGCACTACGCCGGCCAGAGAGACGGGATGCCCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
*
18809893 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
18809958 TCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
18810023 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAA-TTGGTA
261 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
* * * * * * *
18810087 GACATGATCCTTGTATTGTTTTTGGCTTGCACAAAATAATTCAGCTAAAAAATCAAACTGTACAA
326 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
18810152 GATTTCGTGACCATTTGAAAAAAGTG-CCCTCATTTCAGACACTTTAGTAGCTACTGGCAGCAAA
391 GATTTTGTGACCATTTGAAAAAAGTGTCCC-CATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18810216 CCTGTAAAATCTC-AATGCTCCTTAAGGGGGTGTGAGTT-TCCGAGGTTTGATGAGGGATAGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-CGAGGTTTGATGAGGGATAGGGG
*
18810279 GCCAATATAAGGGCCAAGTACCAGCACACATCGCACATCATGTGCGCACACCCCCCTGGCCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCC
* * * * * * *
18810344 CGATCG-CCGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC-CTGGCGATGGTGCCCTGG
583 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * * *
18810407 TGAAGAAAAATACGGTACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGCTCGG
648 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA--C-C--CTC-G
* * *
18810472 TCCGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCATATGCCTAAGT
707 ---G-TC-----C-GG---T---CT--G-ATG-TTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
18810537 CAACCCATGAAACGAGTGTGTGGGCGCTCATTCGGCCGACCAGAGGGGCGGGATGTGCAA-CTCA
752 CAACCCACGAAACGAGCGTGCGGGCGCTCA----GCCGGCCAGAGGGGCGGGATGCGCAAGC-CG
* * * * * * *
18810601 GGGTTCGACCGAGTCCCCTTCTATC-TGCTG-TCGATCTTACTACCACAATCCTCAGT-TCGATC
812 GGGATCGACCGGGTCCCCCTCTA-CGTGCTGCT-GATCCTGCTACCACAACCCTCAGTCT-GGTC
18810663 CGAT
874 CGAT
* * * * * *
18810667 CTTAAATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGAGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
** *
18810732 CGGGCACTACGCCGGCCAGAGAGACAAGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* * * * *
18810797 TTAGGTACATCTTCATATTTTTGCATGCCAACGCCATTTTTATGTCTTGTAAACTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
18810862 TCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACAACTGGTTTTCTATTTTTCACGA-TTTTC
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * *
18810926 AAAATGTTTTATGATTCTGAATTTTTTAAAATTTTTTCGGAAAGATTATTAGCCCCAAACTTGGT
261 AAACT-TTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGT
* * * *
18810991 AGAAGTGATCCTTGTATCTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
18811056 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATCTCAGACACTTT-ATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18811120 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
18811185 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * ** *
18811250 ATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGTCG
585 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* * * * * * * ** *
18811315 AAGAAAAATACGGCACCAGCATATTCCTGAGCCTAGCATGTGCTGCCCCAACCCTCGATATGATC
650 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * *
18811380 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCAGGCGCT
715 TGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * ** * * * ** * * *
18811445 CAGCCAACCAGAGGGGTGAAAAGCGCAAGCTGAGGATCGGTCGGGCCCCCCTTTGCGTGCTG-TC
780 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCT-
* ** *
18811509 GATCCTGCTACCGCAACCCTTGGTCTGGTCTGAT
844 GATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
* * * *
18811543 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGGCGGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* *
18811608 CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* * *
18811673 TCAGGCACATCTTCATATTTTTGCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
18811738 TCCCTTAAGCCTGCACGTGAAGTTTCATGGCGAGACGCCTCATTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** * ** * * * *
18811803 AAAAATTTCACAGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
* * * *
18811868 GACATGATCCTTTTA-TTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAACTGTACAA
326 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
18811932 GATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
18811997 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
18812062 CAATCTAAAGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCTG
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCG
* * **
18812126 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGTG
585 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* * * *
18812191 AAGAAAAATACGGCACTAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCAGTTCGGTC
650 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C---TC-G--
*
18812256 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
707 -G-TC-----C---G---G---TCTG-ATG-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
18812321 ACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGCCGACCAGAGGGGTGGGATGTGCAAGTCGGGG
754 ACCCACGAAACGAGCGTGCGGGCGCTCAGCC-G--G-CCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * *
18812386 TTC-AGCCGGGTCCCCCTCTATGTGCTG-TCGATCTTACTACCACAACCCTCAGTCCGGTCCGAT
815 ATCGA-CCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
* * * * * * * *
18812449 CTTAAACTAGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACAAGTGAGTGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* * * *
18812514 CGGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* * *
18812579 TTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAACTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18812644 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTGGTTTTCTATTTTTCACGATTTTTA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * *
18812709 AAACTTTTTGTGATTCTGAATTTTTTAAAATTTTTTCGGAAGGATTATTGGCCCCAAACTTGGTA
261 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
* * *
18812774 GAAGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
18812839 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATCTCAGACACTTT-ATGGCTACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
18812903 CTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGAGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
18812968 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG--CCCCCTA
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * * *
18813031 TCGTCAGAACCCTAATCCCGTCGGTCAGGTTCTCCGACGATGCT-CTAGCGATGGTG-CCCGGCG
586 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACG
* * * * *
18813094 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCACCATGTGCTGCCACAACCCTCGATCTGGTC
650 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * *
18813159 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTCAAAATGAACTCTGTATGCTTAGACTG
715 TGATGTTAGACTGGGAATGAACTCCGTATGC-----CT--AAGTCAAC-C------C----AC--
* * * * * * *
18813224 GGAATGAACGTCGTATGCCTAAGTCAACCCATGAAACATGCGTGCGAGAGCTTAGCCGGCCAGAG
760 GAAACG-A-G-CG--TG-C--GGGC-GCTCA-G---C---CG-GCCAGAG----G--G-------
* * ** *
18813289 GGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACCCATCCTGCTGCCAC
795 --GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCAC
**
18813354 AACCCTCAGTCTGGTCTAAT
858 AACCCTCAGTCTGGTCCGAT
* * * * * * ** *
18813374 CTTAGACTGGTAATGACCTCCGTACGTCGAAGCCAACTGACGAAATGAGCGCGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* * *
18813439 CGGGCACTACGCCGACAAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* *
18813504 TTAGGCACATCGTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
18813569 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTTATTTTTCACGATTTTT
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTT
* ** ** *
18813634 GAAACTTTCTGCGGTTCAAGATTTTTTAAAAATTTTTT-GGAAGGATTTTTGGCCCCAAACTTGG
260 GAAACTTTTTATGGTTCGGGATTTTTT-AAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGG
* * *
18813698 CT-GACGTGATCCTTGTATTTTTGTTGGGATGCAAAAAAAAATTCAGCTAAAAAC-CTGAAGTGT
324 -TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-GAAGTGT
* * * *
18813761 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGAGACTTTAATGGCTACTGGTAGC
387 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
18813826 AAACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTAATGAGGGATAGG
452 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
18813891 GGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCTGGCACCC
517 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* ** * * *
18813956 CAGATCACCGGAACCCCAATGTCATCGGTCAAGTTCT-C--C---G----G-CGATGGTGCCCCG
582 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* *
18814010 ACGAACAAAAATGCGGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTA
647 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--
* *
18814075 GTCCGATCTTCGACTGGGAATGAACGACGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAG
706 G---G----TC--C--GG--T---C--TG-ATG-TTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
18814140 TCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGGCCAGAGGGACGGGATGCGCAAGCCGGGGA
751 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * * *
18814205 TCGGCCGGGTCCCCTTCTACGTGCTACCGATCCTACTGCCACAACCCTAAGTTTGAT-CGAT
816 TCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
* * * * **
18814266 CTTAGACTAGAAATGAACTCTGTATGCCTAAGCCAACCGACGAAATAAGC-GGC---TAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* *
18814327 CGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* *
18814392 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGA
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
18814457 TCCCTTAAGGCTTCAC-TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
18814521 AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTGCACCCCAAACTTGGT
261 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTG-GCCCCAAACTTGGT
* * * *
18814585 AGACATTATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACA
325 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
18814650 AGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
18814715 CCTGTAAAATATCAAATGCTCTTTAAGGGGCTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
18814780 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA---------CCCCCCG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * *
18814836 ATCGTCGGAACGCCAATGCCGTCGGTCAAGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
585 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
*** * *
18814901 AAGAAAAATGAAACACCAGCACATGCCCGAGCCCAGCGTGTGCTGTCGCAACCCTCGGTCCGGTC
650 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
*
18814966 TGATCTTAGGCTAGGAATGAACATTGTATGCTTAGATCGAGAATTAACTCCGTATGCCTAAGTCA
715 TGA---T--G-T-----T----A--G-A--C-T-G---G-GAATGAACTCCGTATGCCTAAGTCA
* * * * *
18815031 ACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGCGTGATGCGCAAGCCAGGGATTG
754 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** * * * ** *
18815096 ACCGGGTCCCCCTCTGCATGCTGCCAATCTTGCTACCGCAACCCT-TGATCCAGTCCAAT
819 ACCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCACAACCCTCAG-TCTGGTCCGAT
* * * * * * *
18815155 CTTAGACTGGGAATGATCTCCGTATGCCTAAACCAATCGAGGAAACGAGCGGGCGAGCGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
** *
18815220 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGAGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* *
18815285 TTAGGCACGTCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18815350 TCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
18815415 AAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGCCCGAAACTTTGTA
261 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
* * * *
18815480 GATGAGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * **
18815545 GATTTTGTGACCATTTGAAAAAAGTGTCTCGATTTCAGACACTTTAATGGCTACTGATAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
18815610 CTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGTGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
18815675 CAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCCG-CCCCCCGA
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * **
18815739 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGC-AGTGGTAACCCGACG
586 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGA-TGGTGCCCCGACG
* * * * * **
18815803 AAGAAAAATGCGACCCCAGCACATGCCCAAGCCCAACATCTGCTGCCGCAACCCTCGGTCAAGTC
650 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * *
18815868 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGTGCT
715 TGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* ** * * * * *
18815933 CAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCTTCTTCATGCTACCG
780 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTG
* * * *
18815998 ATCCTGCTGCCACAACCCTCAGTCCGATCCAAT
845 ATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
* * ** * **
18816031 CTTTGACAGGGAATGAACTTTGTATGCCTAATCCAACCGACGAAAGGAGCGGGCAAGTGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGC--G-G-GC---
* * ** * *
18816096 TGGGCGGGTGGGCACTATGCCAACCAGAGAGACTGGATGCGCAAGCCATGGATCGATAGGTTGGT
59 -GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGT
* * * *
18816161 AGGTGGGTTTAGGCACATCTTCATATTTTTACGTGTCAATGCCATTTTTATGGCTTGTAAATTCA
123 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
18816226 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
188 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-
*** * * ** * *
18816291 C-ATTTTTGAAACTTTTTGCCGTTCGAGATTTTTTCAAATTTTTTCAAAAACAGTTTTGGCCCCA
252 CGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCA
*
18816355 AACTTGGTAGATGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
317 AACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
18816420 AAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACT
381 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
** * * *
18816485 GATAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAAG
446 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * * *
18816550 GATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCTTGTACGCACACCCCCTG
511 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * *
18816615 GCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGT
576 GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* * * * * * ** *
18816680 GCCCCAACGAAGAAAAAAGTGACACCAGCACAT-CTTCGAGCCCATCATGTGCTATCGTAACCCT
641 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGC-CCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
18816744 CGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTC-ACCCACGAAATGAGC
705 CGGTCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAACGAGC
* * * * ** **
18816808 GTACGGGCGTTCAGCCGGCCAAAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCTTTCT
769 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT
* * * * * * * *
18816873 TCATGCTACCGATCCTACTGCCACAACCCTC-GATCCGGTCCAAT
834 ACGTGCTGCTGATCCTGCTACCACAACCCTCAG-TCTGGTCCGAT
* * * * *
18816917 CTTCGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* * * * *
18816982 TGGGCACTATGTCAGCCAGAGAGACTGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* * *
18817047 TTAGGCACATCTTTATATTTCTGCATGTCAATGCCACTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
18817112 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
18817177 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCGAAACTTTGTA
261 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
*
18817242 GACGGGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
18817307 GATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
18817372 CTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGTC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
18817437 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCCTGGCCCCCC
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCC-GGCCCCCC
* * ** * *
18817502 CGATCGGCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGGTGACGCTCCGACGAAGGTGCCCCGA
583 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* **
18817567 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAATGTGCTGCCATAACCCTCGGTCCGG
648 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* ** *
18817632 T-TCGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAATTGAACGTGCGGGC
713 TCT-GATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * *
18817696 GTTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAACCGGGTCCCCCTCTACATGCTG
777 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTG
** *
18817761 CTGATCCTGCTACTGCAACCCTCAGTCTGGTCTGAT
842 CTGATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
* ** * * * * *
18817797 CTTAGACTAGGAATGAACTTTGTATGCCTAAGTCGATCGACAAAACAAGCGGGCGGGCGGGCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* * * * *
18817862 CAGACACTACGCCGGCCGGAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
*
18817927 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18817992 TCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTC
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
18818056 ATAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCGAAACTTTGT
261 A-AACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGT
* * *
18818121 AGACGTGATCCTTGTA-TTTTGTTGGTATGCACAAAAAAATTCACCTAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
18818185 AGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
18818250 CCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGTG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
18818314 CCAATATAAGGGCCAAGTACCATCACCCATCGCACATCACGTGCGCACACCCCCCGGCCCCACCG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * * * *
18818379 ATCGCCAGAATCCCAATGTCGTCGGTCAGGTTCTCCGACGATTCTCCGACGATGGTGCCCTGGCG
585 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* * * * *
18818444 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATCTACTGCCGTAACCCTCGATCCAGTC
650 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G--
*
18818509 TGATCTTAGACTGGGAATGAAGTCTGTATGCTTAGACTGGGAATGAACTTCGTA-GCCTAAGTCA
707 -G-TC-----C-------G--GTCTG-ATG-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
18818573 ACCCACGAAACGGGCGTGCGGGCGCTCAGTCTGCCAAAGGGGCGGGATGCGCAA------G--C-
754 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
** * * ** * *
18818629 -CCGGGTCCCCCTCTGTGTACT-ATCGATCCTGCT-GGAGCAACCCTCAGTCCGGTCTGAT
819 ACCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTACCA-CAACCCTCAGTCTGGTCCGAT
* * * *
18818687 CTTAGACTAGGAATGAGCTCCGTATGCCTAAGCCAACTGACGAAACGAA-CGGGCGGGCGGGCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AAGCGGGCGGGCGGGCGG
* * * * * * * *
18818751 GCGGGAACTATGCCGGCCAAAGAGACGAGAGGCACAAGGCATGGATCGATAGGGTGGCAGGTGGG
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
*
18818816 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
18818881 GACCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATATTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
18818946 GAAAC-TTTT-TGCGTTCGGGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCCCAAACTTGG
260 GAAACTTTTTATG-GTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGG
* * * *
18819009 TACACGTGATCCATGTATTTTTTTTGGCATGCACAAAAAAGTTCAACCT-AAAACTCGAAGTGTA
324 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAGTGTA
*
18819073 CAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
18819138 AACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
18819203 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACACAAACCCCCCCGG-CCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC
* ** * * ** **
18819267 CTGATCACCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCG
582 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * *
18819332 ATGAAGAAAAATGTGGCACCGGCACATGCCCGAGCCCAGCATGTTCTGTCGCAACCCTCGGTCCG
647 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
*
18819397 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCATATGCCTAAG
712 GTCTGATGTTAGACTGGGAATGAACTCCGTATGC-----CT---AA-G---------T--C-AA-
* * * *
18819462 TCAAACCACGGAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGAA
755 -C---CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * *
18819527 TCGATCGTGTCCCCCTCCATGTGCTG-TCGATCCTGCTACTACAACCCTCGGTCTGGTCCGAT
816 TCGACCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
* *
18819589 CTTAGA-TCGGGAATGAACTCTGTATGCCTAAGCCAACCGACG--A-AA---------CGAGCGG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGG
* *
18819641 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGG
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
** *
18819706 TTTAGGCACATCTTCATATTT-TGGTGTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAAT
130 TTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
18819770 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * *
18819835 AGAAACTTTTTAAGGTTCGAGATTTTTTAAAATTTTTTCGG-AAGAATTTTTGGCCCCAAACCTG
259 TGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAG-ATTTTTGGCCCCAAACTTG
* * * * *
18819899 GTAGATGTGATCCTTCTATTTTTATTGGCATGCACAAAAAAATTCAGCTAACAACTCAAAGTGTA
323 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * * *
18819964 CAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATTGCTATTGGCAGGA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
18820029 AACCTGTAAAATTTCAAATGCTTTTTAAGGGGGTTTTAGTTCTCGAGGTTTGATGAGGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
** **
18820094 GGAAAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCGTGG-CCCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
** ** * * *
18820157 ATATCACCAGAACCCCAATGCCGTCGGTTAGGTTCTCCAACGATGCT-C--C-A---------G-
583 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * *
18820208 CGAAGAAAAATGGGGCACCATCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTTCGG
648 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C---TC-G
*
18820273 TCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGT
707 ---G-TC-----C--GG--T---CT--G-ATG-TTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
18820338 CAACCCACGAAACGAGCATGCGGGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATACGCAAGTCGG
752 CAACCCACGAAAC--G-A-GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
** * * * * * * *
18820403 GGATCGGTCGTGTCCCCCTCCACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGAT
813 GGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
18820468 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
18820508 TAAAACGAGT
Statistics
Matches: 8472, Mismatches: 1041, Indels: 681
0.83 0.10 0.07
Matches are distributed among these distances:
863 1 0.00
864 1 0.00
865 22 0.00
866 6 0.00
867 5 0.00
868 3 0.00
869 2 0.00
871 4 0.00
873 2 0.00
874 2 0.00
875 252 0.03
876 769 0.09
877 300 0.04
878 349 0.04
879 282 0.03
880 620 0.07
881 12 0.00
882 10 0.00
883 4 0.00
884 267 0.03
885 247 0.03
886 596 0.07
887 36 0.00
888 322 0.04
889 164 0.02
890 628 0.07
891 421 0.05
892 102 0.01
893 213 0.03
894 321 0.04
895 6 0.00
896 4 0.00
897 7 0.00
898 5 0.00
899 6 0.00
900 70 0.01
901 55 0.01
902 268 0.03
903 61 0.01
904 374 0.04
905 246 0.03
906 555 0.07
907 89 0.01
908 6 0.00
909 2 0.00
910 6 0.00
911 1 0.00
912 2 0.00
913 1 0.00
914 1 0.00
916 4 0.00
917 2 0.00
918 8 0.00
919 53 0.01
920 4 0.00
921 1 0.00
922 2 0.00
923 4 0.00
924 1 0.00
925 278 0.03
926 170 0.02
927 142 0.02
928 1 0.00
929 30 0.00
931 1 0.00
932 2 0.00
936 2 0.00
937 1 0.00
938 7 0.00
940 2 0.00
941 1 0.00
943 1 0.00
944 2 0.00
945 25 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (877 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
GATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGA
TCCTGCTACCACAACCCTCAGTCTGGTCCGAT
Found at i:18818544 original size:26 final size:24
Alignment explanation
Indices: 18818505--18818555 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 24
18818495 CCCTCGATCC
18818505 AGTCTGATCTTAGACTGGGAATGA
1 AGTCTGATCTTAGACTGGGAATGA
18818529 AGTCTGTATGCTTAGACTGGGAATGA
1 AGTCTG-AT-CTTAGACTGGGAATGA
18818555 A
1 A
18818556 CTTCGTAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 6 0.24
25 2 0.08
26 17 0.68
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (24 bp):
AGTCTGATCTTAGACTGGGAATGA
Found at i:18819455 original size:26 final size:26
Alignment explanation
Indices: 18819404--18819456 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18819394 CCGGTCTGAT
*
18819404 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18819430 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18819456 C
1 C
18819457 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18820317 original size:26 final size:26
Alignment explanation
Indices: 18820279--18820331 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18820269 TCGGTCTGAT
*
18820279 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18820305 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
18820331 C
1 C
18820332 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18821152 original size:26 final size:26
Alignment explanation
Indices: 18821123--18821175 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18821113 TCGGTCTGAT
*
18821123 CTTACACTGGGAATGGACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
18821149 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
18821175 C
1 C
18821176 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:18822168 original size:429 final size:428
Alignment explanation
Indices: 18821370--18822229 Score: 1267
Period size: 429 Copynumber: 2.0 Consensus size: 428
18821360 GCGGGCGGAC
* * * *
18821370 GTGCGGGCGGGCATTATGCCGGCCAGAGAGACGGGATGCGCAAATCGTGGATCGATAGGGTGGTA
1 GTGCGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAATCGTCGATCGATAGGGTGGCA
* * **
18821435 GGTGGGTTTAGGCACTTCTTCATATCTCTACGTGCCAATGCCATTTTTATTTCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATCTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
18821500 ACAATGGTCTCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
131 ACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACG
* * * ** **
18821565 ATTTTCAAAATTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAAA
196 ATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCCAAAA
* * * * * * *
18821630 GTTGGTAGACATGATCCTTGTATTTTTGTTCCCTTGTAAAAAAAAATTCAGCTAAAAACTCGAAG
261 CTTGGTACACATGATCCTCGTATTTTTGTTCCCATGCAAAAAAAAATTCAACTAAAAACTCGAAC
**
18821695 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGAC
326 TGTACAAGATTTTGCAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGAC
18821760 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGT
* *
18821798 GTGCGGGCGGGCACTATACCGGCCAGAGAGATGGGATGCGC-AAGCTGTCGATCGATAGGGTGGC
1 GTGCGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAATC-GTCGATCGATAGGGTGGC
* *
18821862 AGGTGGGTTTGGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
65 AGGTGGGTTTAGGCACATCTTCATATCTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18821927 TACAAATGGACCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTTCTATTTTTC
130 TAC-AATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCG-TTTTCTATTTTTC
*
18821992 ACGATATTT-GAAACTTTTTGC-GTTCGAGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCC
193 ACGAT-TTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCC
* * * ** * *
18822055 CAAACTTGGTACACGTGATCCTCGTATTTTTTTTGGCATGCACAAAAAAGTTCAACTAAAAACTC
257 AAAACTTGGTACACATGATCCTCGTATTTTTGTTCCCATGCAAAAAAAAATTCAACTAAAAACTC
18822120 GAACTGTACAAGATTTTGCAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
322 GAACTGTACAAGATTTTGCAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
18822185 TGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGT
387 TGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGT
18822227 GTG
1 GTG
18822230 AGTTCTCGAG
Statistics
Matches: 384, Mismatches: 44, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
427 3 0.01
428 116 0.30
429 235 0.61
430 27 0.07
431 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (428 bp):
GTGCGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAATCGTCGATCGATAGGGTGGCA
GGTGGGTTTAGGCACATCTTCATATCTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACG
ATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCCAAAA
CTTGGTACACATGATCCTCGTATTTTTGTTCCCATGCAAAAAAAAATTCAACTAAAAACTCGAAC
TGTACAAGATTTTGCAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGAC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGT
Found at i:18822493 original size:26 final size:26
Alignment explanation
Indices: 18822457--18822508 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18822447 CGGTCCGATG
18822457 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
18822483 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
18822509 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:18826216 original size:26 final size:26
Alignment explanation
Indices: 18826180--18826231 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18826170 CGGTCCGATG
18826180 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
18826206 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
18826232 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:18827800 original size:26 final size:26
Alignment explanation
Indices: 18827771--18827823 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18827761 TCGGTCCGAT
18827771 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18827797 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18827823 C
1 C
18827824 CTAATTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18830311 original size:26 final size:26
Alignment explanation
Indices: 18830259--18830311 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18830249 CCAGTCCGAT
**
18830259 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCACATG
* *
18830285 CTTAGACTGGGAATGAACTCTACATG
1 CTTAGACTAGGAATGAACTCCACATG
18830311 C
1 C
18830312 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:18832022 original size:26 final size:26
Alignment explanation
Indices: 18831986--18832038 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18831976 CTGGTCCAAT
18831986 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18832012 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18832038 C
1 C
18832039 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18833404 original size:913 final size:891
Alignment explanation
Indices: 18831140--18835011 Score: 4896
Period size: 913 Copynumber: 4.3 Consensus size: 891
18831130 CCGGTCTGAT
* **
18831140 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTATGCGGGCGCT-AAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA-
** * * * **
18831204 CTGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTGCCGAT-T---T-T---G---C
65 CCCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTGCCGATCC
* * * * * * *
18831258 TA---CCACAACCC-TCGATCCGATCCAATCTTAAACTGGGAATCAACTCCGTATGCGTAAGCCA
130 TACTGCCACAACCCTTAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18831319 ACCGACGAAAC-A---AGC--GGG-TGGGCGGGCACTATGTCGGCCAGAGAGACGAGATGCGCAA
194 ACCTACGAAACGAGCGGGCGGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
18831377 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATTTTCATATTTTTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18831442 TTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * *
18831507 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACTATTTGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTT
* * * * * *
18831572 CGGAAGGTGTTGTGGCCCCAAACTTCACGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAA
454 CAGAAGGAGTTTTGGCCACAAACTT--CGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
18831637 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18831702 TCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTATG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18831767 AGTTCTCAAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCAC
647 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18831832 ATCATGTGTGCATACCCCCCCGGCCACCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
712 ATCATGTGCGCACACCCCCCCGGCC-CCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCT
* ** * *
18831897 CCGGC-GATGGTACCCCGGTGAAGAAAAATGTGGCACCAGCACAAGCCCAAGCCCAGCATGTGCT
776 CCGGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCT
* *
18831961 GCCGCAAACCTCGG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
841 GCCGCAACCCTCGGATC-GATCCAATCTTAGACTGGGAATGAACTCCGTATG
* *
18832012 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTC-AG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * ** *
18832076 TCGACAAGAGGGGCGGGATGCGCAAGTCGGCGATCGACCGGGTCCCCCTCTGTGTCCTGCCGATC
66 CCG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGT-GTGCCGATC
* * * * *
18832141 CTACTGCCACAACCCTCAGTCTGATCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCT
129 CTACTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
18832206 A-CTGACAAAACGAGCGGGTGGGCCGACGGGCGAGCACTACGACGGCCAGAGAGACGGGATCCAC
194 ACCT-ACGAAACGAGCGGGCGGG-GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * **
18832270 AAGCCGTGGATCGATAGGATGGTAGGAGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
18832335 CATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18832400 -CTGACTCGTTTTCCATTTTTCATGATTTTCAAAACCTTTCACGGTTCGGGATTTTTTAAAATTT
387 AC-GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTT
** *
18832464 TTTC-GAAAGGAGTTTTGGAAACAAACTTCGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
451 TTTCAG-AAGGAGTTTTGGCCACAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
18832528 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
18832593 TTTCAAACACTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTTAAAAGATCTTTAAGGGGGTG
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
18832658 TGAGTTCTCAAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
645 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
18832723 ACATCATGTGCGCACACACCCCCCGACCCCCCGATCGCTGGAACCCCAATGTCGTCGGTCAGGTT
710 ACATCATGTGCGCACAC-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTT
*
18832788 CTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCCTGGCCACCAGCACATGCCCG
774 CTCC---G--G---C-G-GATGGTGCCCCGACGAAGAAAAATG-C-GG-CACCAGCACATGCCCA
* *
18832853 AGCCCAGGATGTGCTGCTGCAACCCTCGGATCGATCCAATCTTTAGAACTGGGAATGAACTCCGA
826 AGCCCAGCATGTGCTGCCGCAACCCTCGGATCGATCCAATC-TTAG-ACTGGGAATGAACTCCG-
18832918 TATG
888 TATG
* *
18832922 CTTAGGGACTGGAAATGAACTTTGT-TGCCTAAGTCAACCCACGAAACG-GCGTGCGGGCGCATC
1 CTTA--GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC-T-
**
18832985 CAACCCGCCAGAGGGGTAGGAT-CGCAAAGGTCCGGGGATCGACCGGG-CCCCCTCTACGTGCTG
62 CAACCCGCCAGAGGGGCGGGATGCGC-AA-G-CCGGGGATCGACCGGGTCCCCCTCTACGTG-TG
* * * *
18833048 TCGATCCTACTGCCACAACCCTTGGTCTGGTCAGATCTTAGACTGGGAATGAACTTCGTATGCCT
123 CCGATCCTACTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
18833113 AAGCCAACCTACGACACGAGCGGGCGGGTGGAAGGGCGGGCACTACGCCAGCCAGAGAGACAGGA
188 AAGCCAACCTACGAAACGAGCGGGCGGG-GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *
18833178 TACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCC
252 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * *
18833243 AATGCCATTTTTATGGCTTTTATATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
317 AATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** *
18833308 GCAAGACGACTTGTTTTCTATTTTTTATGATTTTTTAAACTTTTTACGATTCGAGATTTTTTAAA
382 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAA
* * * * *
18833373 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTATACGGGATCCTTGTATTTTTGTTGCCATG
447 ATTTTTTCAGAAGGAGTTTTGGCCACAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
18833438 CGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
512 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
18833503 CCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTTTTTAATGGG
577 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
18833568 GTGTGAGTTCTCGAGGTTTGATTAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCATCCAT
642 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
18833633 CACACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTTGCCGGTCAG
707 CGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAG
* * * *
18833697 GTTCTCCAG-TGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCTCAAGCCCAGCAT
771 GTTCTCCGGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCAT
* * * * ** *
18833761 GTGCTGTCGCAACCCTCTGTTCGGTCTGATATTAGACTGGGAATGAACTCCGTATG
836 GTGCTGCCGCAACCCTCGGATCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
* * *
18833817 CTTGGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
** * *
18833882 AAGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTACGTGT-CACTGATC
66 CCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTGC-C-GATC
** *** * *
18833946 CTGTTGCTGTAACCCTTGGTACT-GTCCGATCTTAGACTGGGAATGAACTACC-TACGCCTAAGC
129 CTACTGCCACAACCCTTAGT-CTGGTCCGATCTTAGACTGGGAATGAACT-CCGTATGCCTAAGC
* *
18834009 CAACCGACGAAACGAGCGGGCGAAGGGG-CGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
192 CAACCTACGAAACGAGCGGGCG--GGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
** * *
18834073 GCAAGCTTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTGCGTGCCAAT
255 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
18834138 GCCATTTTTATGGCTCGTAAATTCATACAACAGTCCCTTAAGCCTTCACGTGAAATTTCATGGCA
320 GCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
18834203 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTATAATT
385 AGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATT
* * *
18834268 TTTTCAGAAGGAGTTTTGGCCACAAACCTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC
450 TTTTCAGAAGGAGTTTTGGCCACAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
18834333 AAAAAAATTCGGCTAAAAACTCGAAGTGTACAAGATTGTGTGACCATTTGAAAAAAGTGTCCCCA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
18834398 TTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
** *
18834463 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGC
645 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
18834528 ACATCATGTGCGCAAACCCCTCCCCCCGGCCCCTCCGATCGCCTGAATCCCAATGTCGTCGGTCA
710 ACATCATGTGCGC--A-CAC-CCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGTCGTCGGTCA
* * * * **
18834593 GGTTCTCCGGCGG-TGGTGCCTCGACAAAGAAAAATACAGCACCAGCACATGCCTGAGCCCAGCA
770 GGTTCTCCGGCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCA
* * **
18834657 TGTGCTGCCGCAACCCTC-GATCCGATTCGATCTTAGACTGGGAATGAACTTTGTATG
835 TGTGCTGCCGCAACCCTCGGAT-CGATCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * * **
18834714 CTTAGACTAGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTTAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * *
18834779 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGTCACCGATCC
66 CCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGT-GCCGATCC
* ** * *
18834844 TGCTATCGCAA-CCTTCAGTCTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCA
130 TACTGCCACAACCCTT-AGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * ** ** * * *
18834908 ACCGATGAAATGAACGGATAGGCGGG-CGGGCGGTAACTACGTCGGACAGAGAGATGGGATGCGC
194 ACCTACGAAACGAGCGG-GCGG-GGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
18834972 AAGCCATTGATCGATAGGGTGGTAGATTGGTTTAGGCACA
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
18835012 CCCCTCTCGG
Statistics
Matches: 2607, Mismatches: 307, Indels: 147
0.85 0.10 0.05
Matches are distributed among these distances:
871 2 0.00
872 95 0.04
873 1 0.00
876 1 0.00
878 1 0.00
881 1 0.00
884 3 0.00
886 1 0.00
887 54 0.02
888 2 0.00
891 18 0.01
892 547 0.21
893 313 0.12
894 41 0.02
895 247 0.09
896 33 0.01
897 378 0.14
898 50 0.02
899 3 0.00
900 1 0.00
901 25 0.01
904 22 0.01
906 2 0.00
907 49 0.02
908 6 0.00
909 17 0.01
910 20 0.01
911 33 0.01
912 72 0.03
913 551 0.21
914 18 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (891 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTGCCGATCCT
ACTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CTACGAAACGAGCGGGCGGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCA
GAAGGAGTTTTGGCCACAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGC
GGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGC
AACCCTCGGATCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18834242 original size:892 final size:891
Alignment explanation
Indices: 18828647--18835011 Score: 7345
Period size: 892 Copynumber: 7.2 Consensus size: 891
18828637 CCAGCATGTC
* * * * * * **
18828647 CTGCCGCAACCCTCAGTCCGGTCTGATCTTAGATTGGGATTGAACTCCGTATGCCTAAGCCAAAT
1 CTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * ** * * *
18828712 GATGAAACGAGTGGGC---AGGCGGGCGGGCACTATACAGGCCAGAGAGACAGGATGCGCAAGTC
66 GACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * * **
18828774 GTGGATCGATAGGGTGGTATGTGGGTTTAGGTACATCATCATATTTTTGCGTGCCAATGATATTT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
18828839 TTATGGTTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
196 TTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * ** *
18828904 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCACGATTTTTTAAAATTTTTTCGG
261 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCAG
* *
18828969 AAGGAGTTTTGGCCCCAAACTT-GTTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
326 AAGGAGTTTTGGCCACAAACTTCG-TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
** *
18829033 ATTCAGCTAAAAACTCGAAGTGTTTAAGATTTTG-GACCATTTGAAAAAAGTGTCCCAATTTCAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18829097 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTG
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18829162 CTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCA
520 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * **
18829227 TGTGCGCACACCCCCCGGCCCCCCCAACCGTCGGAACCAAAATGTCGTCGGTCAGGTTCTCC-GA
585 TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCAG-
* * * * * * *
18829291 CGATGGTTCCCCAACGAAGAAAAATGCGGCACCAGCACATACCCGAGGCCAGCATGTGCTGGCAC
649 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGC
* * * **
18829356 AACCCTCAG-TCTGGTCCGATCTTAGATTGGGAATGAACTCTATATGCTTAGACTGGGAATGAAC
714 AACCCTC-GTTC-GATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * ** *
18829420 T-TCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTAAGTTGGCCAGAGGGGCGGGA
777 TCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGCGAGA
* * * * * * *
18829484 TGCGCAAGCCGGGGATAGGCCTGGTCCCCCTCTGCGTG-CTGC-CAATCCTG
841 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTC-ACTCGATCCTA
* ** * * * *
18829534 CTACCGTAACCCTCATTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
1 CTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
18829599 GACGAAATGA----GC--G-GACGGGCGGGCAGTACTCCGGTCAGAGAGACGGGATGCGCAAGCC
66 GACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
18829657 GTGGATCGATAGGGTGGTAGGTGGGTTTACGG-ACATCTTCATATTTTTGCATGCCAATGCCATT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
18829721 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** ** * *
18829786 CTCGTTTT-TATTTTTCACGATTTTTGAAACTTTTGGCGGTTCAGGA-TTTTTAAAATTTTTTTC
260 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAA-TTTTTTC
* * * *
18829849 GGAAGGAGTTTTAGGCTCTA-AAACTTAGTAGATGTGAT-CTTGTA-TTTTG-TGGCATGCATAA
324 AGAAGGAGTTTT-GGC-C-ACAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
18829910 AAAAATTCAACTAGAAA-TCGAAGTAGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCTA-
386 AAAAATTCAGCTAAAAACTCGAAGT-GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
18829973 TTCAGACACTTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTC--TAA--GGGTG
450 TTCAGACAC-TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* ** * * *
18830034 TGAGTTTGTTTGAGGATTGATGAGGGATA-CGGGCAAATATTAAGGGCCAAGTA-CAGC-CACCA
514 TGAG-TT-CTCAAGGTTTGATGAGGGATAGGGGGCCAATA-TAAGGGCCAAGTACCAGCAC-CCA
* * * * * * *
18830096 CCGCACATACATGGTACACACACTCCTC-G-CCCCCCGATCGCTCAGAAACCCCAATGCCGTCGG
575 TCGCACAT-CAT-GTGCGCACACCCCCCGGCCCCCCCGATCGC-C-GGAACCCCAATGTCGTCGG
* * * * *
18830159 TCAGGTTTCTCCGGCAATGGTGTGCCCC-ACTGAAGAAAAATGCGACACCAGCACATG-TCGAGC
636 TCAGG-TTCTCCAGCGAT-G-GTGCCCCGAC-GAAGAAAAATGCGGCACCAGCACATGCCCAAGC
* * * * * * * *
18830222 ACAGCATGTACTTCCGTAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCT
697 CCAGCATGTGCTGCCGCAACCCTCGTTCGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCT
** * ** *
18830287 TAGACTGGGAATGAACTCTACATGCCTAAGTGAACCCACGAAACGAGCGTTTGGGCGCTCAG-CC
761 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCA
* * * * * *
18830351 GACCAGAGGGGCGGGATGCGTAAGCCAGGGATCGGCCGGGT---CCTCTATGTG-CTGC-CGATC
826 G-CCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTC-ACTCGATC
*
18830411 CTG
889 CTA
* * * * * *
18830414 CTACCACAACCCTCAGTTTGGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAATC
1 CTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * **
18830479 GACGAAAC-A-----AGTG-GGCGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCGTAAGTT
66 GACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
18830537 GTGGATCGATAGGGTGGCAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
18830602 TTATGCCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
196 TTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * * * *
18830667 TCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGGTCCGGGATTTTTTAAAATTTTTTCGG
261 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCAG
* *
18830732 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
326 AAGGAGTTTTGGCCACAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
18830797 TTCAGCTAAGAACCCGAAGTGTACAAGATCTTGTGACCATATGAAAAAAGTGTCCCCATTTCAGA
391 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18830862 CACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTC
456 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** **
18830927 TTGAGGTTTGATGAGGGATAGGGGTTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
521 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * ** * * * *
18830992 TTGTGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATG-CGACCGATCAGGTTCTCCGGT
586 GTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCG-TCGGTCAGGTTCTCCAGC
* * ** * *
18831056 GATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCTGAGCCCAGCATGTGCTACCG-T
650 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCA
* *
18831120 ATCC-C--TCG-----ATC-----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCC
715 ACCCTCGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT
** * * *
18831161 GTATGCCTAAGTCAACCCACGAAACGAGTATGCGGGCGCTAAG-CTGGCCAGAGGGGCGGGATGC
780 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-AGCCAGAGGGGCGAGATGC
* * * * *
18831225 GCAAGCTGGGGATCGGCCGGGT---GC-CGA--T-T---T---TGCTA
844 GCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTCACTCGATCCTA
* * * * * * *
18831260 ---CCACAACCC-TCGATCCGATCCAATCTTAAACTGGGAATCAACTCCGTATGCGTAAGCCAAC
1 CTGCCACAACCCTTAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
18831321 CGACGAAAC-A---AGC--G-GGTGGGCGGGCACTATGTCGGCCAGAGAGACGAGATGCGCAAGC
65 CGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
18831379 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATTTTCATATTTTTGCATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
18831444 TTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** * * *
18831509 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACTATTTGGGATTTTTTAAAATTTTTTCG
260 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCA
* * * * *
18831574 GAAGGTGTTGTGGCCCCAAACTTCACGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAAA
325 GAAGGAGTTTTGGCCACAAACTT--CGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
18831639 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18831704 GGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTATGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18831769 TTCTCAAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACAT
518 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18831834 CATGTGTGCATACCCCCCCGGCCACCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
583 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCC
* * ** * *
18831899 GGCGATGGTACCCCGGTGAAGAAAAATGTGGCACCAGCACAAGCCCAAGCCCAGCATGTGCTGCC
647 AGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCC
* * *
18831964 GCAAACCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
712 GCAACCCTCGTTC-GATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
18832029 CTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTC-GACAAGAGGGGCGGG
776 CTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAG-CCAGAGGGGCGAG
* *
18832093 ATGCGCAAGTCGGCGATCGACCGGGTCCCCCTCT--GTGTC-CTGCCGATCCTA
840 ATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTCACT--CGATCCTA
* * * * * *
18832144 CTGCCACAACCCTCAGTCTGATCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCTACT
1 CTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * *
18832209 GACAAAACGAGCGGGTGGGCCGACGGGCGAGCACTACGACGGCCAGAGAGACGGGATCCACAAGC
66 GACGAAACGAGCGGGCGGG-CGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * **
18832274 CGTGGATCGATAGGATGGTAGGAGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
18832339 TTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-CTG
195 TTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-G
* * * *
18832403 ACTCGTTTTCCATTTTTCATGATTTTCAAAACCTTTCACGGTTCGGGATTTTTTAAAATTTTTTC
259 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTC
** *
18832468 -GAAAGGAGTTTTGGAAACAAACTTCGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
324 AG-AAGGAGTTTTGGCCACAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18832532 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
18832597 AAACACTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTTAAAAGATCTTTAAGGGGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18832662 TTCTCAAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
518 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18832727 CATGTGCGCACACACCCCCCGACCCCCCGATCGCTGGAACCCCAATGTCGTCGGTCAGGTTCTCC
583 CATGTGCGCACAC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCC
*
18832792 GGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCCTGGCCACCAGCACATGCCCGAGCC
647 ----A-G---C---GATGGTGCCCCGACGAAGAAAAATG-C-GG-CACCAGCACATGCCCAAGCC
* * *
18832857 CAGGATGTGCTGCTGCAACCCTCGGATCGATCCAATCTTTAGAACTGGGAATGAACTCCGATATG
698 CAGCATGTGCTGCCGCAACCCTC-GTTCGATCCAATC-TTAG-ACTGGGAATGAACTCCG-TATG
* *
18832922 CTTAGGGACTGGAAATGAACTTTGT-TGCCTAAGTCAACCCACGAAACG-GCGTGCGGGCGCATC
759 CTTA--GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC-T-
** * *
18832985 CAACCCGCCAGAGGGG-TAGGAT-CGCAAAGGTCCGGGGATCGACCGGG-CCCCCTCTACGTG-C
820 CAGTCAGCCAGAGGGGCGA-GATGCGC-AA-G-CCGGGGATCGACCGGGTCCCCCTCTACGTGTC
**
18833046 TGTCGATCCTA
881 ACTCGATCCTA
* * *
18833057 CTGCCACAACCCTTGGTCTGGTCAGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * *
18833122 TACGACACGAGCGGGCGGGTGGAAGGGCGGGCACTACGCCAGCCAGAGAGACAGGATACGCAAGC
66 GACGAAACGAGCGGGCGGGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
18833187 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
18833252 TTTATGGCTTTTATATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** *
18833317 CTTGTTTTCTATTTTTTATGATTTTTTAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCA
260 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCA
* * * * * *
18833382 GAAGGAGTTTTGGCCCCAAACTTGGTATACGGGATCCTTGTATTTTTGTTGCCATGCGCAAAAAA
325 GAAGGAGTTTTGGCCACAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
18833447 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18833512 ACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTTTTTAATGGGGTGTGAGTT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
18833577 CTCGAGGTTTGATTAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCATCCATCACACATCA
520 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
18833642 TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTTGCCGGTCAGGTTCTCCAGT
585 TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCAGC
* * *
18833707 GATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGTCGCA
650 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCA
* ** * *
18833772 ACCCTCTGTTCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTC
715 ACCCTC-GTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
*
18833837 TGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG-CAAGCCAGAGGGGCGAGATG
779 TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-AGCCAGAGGGGCGAGATG
* *
18833901 CGCAAGCCGGGGATCGACCAGGTCCCCCTCTACGTGTCACT-GATCCTG
843 CGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTCACTCGATCCTA
* *** * *
18833949 TTGCTGTAACCCTTGGTACT-GTCCGATCTTAGACTGGGAATGAACTACC-TACGCCTAAGCCAA
1 CTGCCACAACCCTTAGT-CTGGTCCGATCTTAGACTGGGAATGAACT-CCGTATGCCTAAGCCAA
*
18834012 CCGACGAAACGAGCGGGCGAAGG-GGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
64 CCGACGAAACGAGCGGGCG--GGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
** * *
18834076 AGCTTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTGCGTGCCAATGCC
127 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
18834141 ATTTTTATGGCTCGTAAATTCATACAACAGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGA
192 ATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
18834206 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTATAATTTTT
257 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTT
* * *
18834271 TCAGAAGGAGTTTTGGCCACAAACCTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
322 TCAGAAGGAGTTTTGGCCACAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18834336 AAAATTCGGCTAAAAACTCGAAGTGTACAAGATTGTGTGACCATTTGAAAAAAGTGTCCCCATTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18834401 CAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** *
18834466 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACA
517 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18834531 TCATGTGCGCAAACCCCTCCCCCCGGCCCCTCCGATCGCCTGAATCCCAATGTCGTCGGTCAGGT
582 TCATGTGCGC--A---CACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGT
* * * * * * **
18834596 TCTCCGGCGGTGGTGCCTCGACAAAGAAAAATACAGCACCAGCACATGCCTGAGCCCAGCATGTG
642 TCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTG
* * * ** *
18834661 CTGCCGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTAGGA
707 CTGCCGCAACCCTCG-TTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * *
18834726 ACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTTAGTCGGCCAGAGGGG
771 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGG
* * * *
18834791 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGTCAC-CGATCCTG
836 CGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTCACTCGATCCTA
** * *
18834846 CTATCGCAA-CCTTCAGTCTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAAC
1 CTGCCACAACCCTT-AGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *** ** * * *
18834910 CGATGAAATGAACGGATAGGCGGGCGGGCGGTAACTACGTCGGACAGAGAGATGGGATGCGCAAG
65 CGACGAAACGAGCGGGCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
18834975 CCATTGATCGATAGGGTGGTAGATTGGTTTAGGCACA
129 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
18835012 CCCCTCTCGG
Statistics
Matches: 4748, Mismatches: 557, Indels: 336
0.84 0.10 0.06
Matches are distributed among these distances:
842 1 0.00
843 303 0.06
845 227 0.05
846 104 0.02
847 5 0.00
848 1 0.00
850 2 0.00
851 1 0.00
852 1 0.00
854 2 0.00
855 93 0.02
856 6 0.00
857 1 0.00
859 2 0.00
861 1 0.00
862 1 0.00
863 2 0.00
864 2 0.00
865 1 0.00
866 1 0.00
868 2 0.00
870 1 0.00
871 6 0.00
872 93 0.02
873 1 0.00
875 1 0.00
876 2 0.00
877 3 0.00
878 10 0.00
879 53 0.01
880 338 0.07
881 164 0.03
882 253 0.05
883 362 0.08
884 94 0.02
885 33 0.01
886 10 0.00
887 120 0.03
888 2 0.00
891 16 0.00
892 549 0.12
893 320 0.07
894 32 0.01
895 249 0.05
896 26 0.01
897 387 0.08
898 48 0.01
899 2 0.00
900 1 0.00
901 25 0.01
904 22 0.00
906 2 0.00
907 47 0.01
908 8 0.00
909 17 0.00
910 20 0.00
911 26 0.01
912 80 0.02
913 545 0.11
914 17 0.00
915 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (891 bp):
CTGCCACAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCAG
AAGGAGTTTTGGCCACAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCAGCG
ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA
CCCTCGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGCGAGATGCGC
AAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTCACTCGATCCTA
Found at i:18834738 original size:26 final size:26
Alignment explanation
Indices: 18834688--18834740 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18834678 CCGATTCGAT
* * **
18834688 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
18834714 CTTAGACTAGGAACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
18834740 C
1 C
18834741 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:18838056 original size:862 final size:845
Alignment explanation
Indices: 18836027--18839247 Score: 3154
Period size: 862 Copynumber: 3.7 Consensus size: 845
18836017 GATCTGGTCT
* * *
18836027 AATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAATCGATG-AA--A-CGAGTGGGCA--G
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGAGCGGGCAGGG
* * * **
18836086 GCGAGCACTATGCCGGCCAGAGAGACAGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGAA
66 GCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
** * *
18836151 TTTAGAAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATA
131 TTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
18836216 TTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTTGTTTTCTATTTTTCACGATTTTT
196 GTCCCTTAAGCCTTCACTTGAAGTTTCATGGC-A-AAGACTCGTTTTCTATTTTTCACGATTTTT
* * *
18836281 GAAACGTTTT-GCAGTTCAGGATTTTTTAATATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
259 GAAAC-TTTTAGCGGTTCGGGATTTTTTAAAATTTTTTT-GAAGGAGTTTTGGCCCCAAACTTGG
* * *
18836345 TAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
322 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
18836410 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
18836475 ACTTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
18836540 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGTAGAGCCCCCCCGGCCCCC
517 GCCAATATAAGGGCCAAGTACCA-CACCCATCGCACATCATGTGCGCACA-CCCCCCC-GCCCCC
* * *
18836605 CTGATCGTCGGAACCCCAATGCCGCCAGTCAGGTAATCCGGCGATGCTCCGGCGATGGTGCCCCA
579 CCGATCGTCGGAACCCCAATGCAGCCAGTCAGG--AT----C--TGCTCCGGCAATGGTGCCCCA
* *
18836670 GCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCATAACCCTCAGTCTG
636 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCATAACCCTCAGTCTG
** * *
18836735 ATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGT
701 ATCCAATCTTAGACTGGGAATGAACTTCGTATCCCTAAGTCAACCCACGAAACGAGTGTGCGGGG
* * * *
18836800 GCTGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCTCGCTACTGTAA
766 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTCGCTACCGTAA
**
18836865 CCCTCAGTCTGGTCC
831 CCCTCAGTCCAGTCC
* * * ***
18836880 AATCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAA-CTGACGAAACGAGCTG-TCGGATGG
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATC-GACGAAACGAGC-GAGCGGGCAG
* *
18836943 GTGGCCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTAGATTGATAGGGTGGTAGG
64 G-GG-CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
18837008 TGGGTTTAGGCACATCTTCATATTTCTGTGC-GCCAATGCAATTTTTATGGCTTGTAAATTCATA
127 TGGGTTTAGGCACATCTTCATATTTCTG-CCTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
18837072 CAATGGTCCCTTAAGCCTTCA-TGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACG
191 CAATGGTCCCTTAAGCCTTCACT-TGAAGTTTCATGGCAA-A-GACTCGTTTTCTATTTTTCACG
** * ** * *
18837136 ATTTTCAAAACTATTTA-CGGTTCGAGATTTTTTAAAATTTTTCAGAGGGAGCTTTGGCCCCAAA
253 ATTTTTGAAACT-TTTAGCGGTTCGGGATTTTTTAAAATTTTTTTGAAGGAGTTTTGGCCCCAAA
*
18837200 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
317 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * * *
18837265 TGTACAAGATGTTGTGACCATTCGAAAAAAATGTCCCCATTTCAGACACTTTAATAGCTATTGGC
382 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
18837330 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
447 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
18837395 AGGGGGCCAATATAAGGGCCAAGTA-C-CACCCATCGCATATCATGTGCGCACACCCCCCCGCCC
512 AGGGGGCCAATATAAGGGCCAAGTACCACACCCATCGCACATCATGTGCGCACACCCCCCCGCCC
*
18837458 CCCCGATCGTCGGAACCCTAATGCAGCC-GATCAGG-T-T-CTCCGGCAATGGTGCCCCAACGAA
577 CCCCGATCGTCGGAACCCCAATGCAGCCAG-TCAGGATCTGCTCCGGCAATGGTGCCCCAACGAA
* ** * * ** *
18837519 GAAAATTTTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCTTTGGTCTGGTCCA
641 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCATAACCCTCAGTCTGATCCA
*
18837584 ATCTTAGATTGGGAATGAACTTCGTATCCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
706 ATCTTAGACTGGGAATGAACTTCGTATCCCTAAGTCAACCCACGAAACGA--GT------G-T--
* *
18837649 GCCGGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGGTACCGAT
760 G-C-G---G-GGG-CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGAT
* * * *
18837714 CTTGTTGCCGTAACCCTCGGTCCAGTCC
818 CTCGCTACCGTAACCCTCAGTCCAGTCC
18837742 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGAGCGGGCACGC
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGAGCGGGCA-G-
* * * * *
18837807 GGGCGGGCACTACGCCAGCGAGAGAGACGGGATGCGCAAGGCGTGGATCGATGGGGTGGTAGGTG
64 GGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
18837872 GGTTTAGGCACATCTTCAAATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
129 GGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* **
18837937 TGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAAGACTCATTTTCTATTTTTCATAATTTTT
194 TGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAAGACTCGTTTTCTATTTTTCACGATTTTT
*
18838002 GAAACTTTTAGGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGG
259 GAAACTTTTA-GCGGTTCGGGATTTTTTAAAATTTTTTTG-AAGGAGTTTTGGCCCCAAACTTGG
* *
18838067 TAGATGTGATTCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
322 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
18838132 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
18838197 ACCTGTAAAATCTCAAATGCTCTTTAA-AGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
18838261 GCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACTCCCCGGCCCCTCC
517 GCCAATATAAGGGCCAAGTACCA-CACCCATCGCACATCATGTGCGCACAC-CCCC--CCGC-CC
* * * * * * * * *
18838326 GGCCCGTCGGTCGTCAGAACCGCAATCCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGT
577 --CCC--CGATCGTCGGAACCCCAATGCAGCCAGTCAGG----AT--C--TGCTCCGGCAATGGT
* * * * * * * *
18838391 GCCCCGATGAAGAGAAATGCGTCACCAGAACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTC
630 GCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCATAACCCTC
* * * *
18838456 GGTCCGATCCGATCTTTGACTGGGAATGAACTTCGTTTGCTTAGGCTGGGAATGAACTCCGTATG
695 AGT-C--T--GATC-----C--------AA-------T-CTTAGACTGGGAATGAACTTCGTATC
*
18838521 CCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAGCCGGCCAGAGG-GGTAGCATGCGTAAG
734 CCTAAGTCAACCCACGAAACG-A-GT----G---T--G-CGG---G-GGCGG--G-ATGCGCAAG
** * ** * * *** * * * * *
18838585 CTAGGGATTGGTCGGGTCCCCTTCTACGTGCTGTAGATC-CTGCTAACC-CAACACTCTGACCGG
780 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTC-GCT-ACCGTAACCCTCAGTCCAG
18838648 TCC
843 TCC
* * * *
18838651 GATCTTACACTGGGAATGAACTCCGTATGCGTAAGCCGATCGACGAAACGAGCGGACGAGCGGGC
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA---G-CGAGCGGGC
* * *
18838716 GAGCGGGCGGGCACAACGACGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTA
62 -AG-GGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
18838781 GGTGGGTTTGGGCACATCTTCATATTTCTACGTGCCAATGCCAATTTTTAGTGGCTTGTAAATTC
125 GGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCC-ATTTTTA-TGGCTTGTAAATTC
* * *
18838846 A-ACATATGG----TT----C--C-C------TTT-ATGGCAGATGATTCGTTTTCTATTTTCTT
188 ATACA-ATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCA-AAGACTCGTTTTCTATTTT-TC
* * * * *
18838892 ACGA-TTTT-CAACTTTT-G-AGTTCGGTATTTCTTTTATAATTTTTATGGAAGGAG-TTTGGCT
250 ACGATTTTTGAAACTTTTAGCGGTTCGGGA-TT-TTTTAAAATTTTT-TTGAAGGAGTTTTGGC-
* * *
18838952 CCCAAACTTGTTAGACG-GATCCCTGTA--TTTGTTGGTATGCAC--AAAAATTCAGCTAAAAAC
311 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
18839012 TCGAAGCAAGTGTTTACAAGAATTTTTGTGACCTTTTTG-AAAAAGTGTTCCCCATTTTCAAGGA
376 TC---G-AAGTG--TACAAG-A-TTTTGTGACC-ATTTGAAAAAAGTG-TCCCCA-TTTC-A-G-
* * *
18839076 ACACTTTAGTGGCTACTTGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTG-GAGTT
427 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * ** ** *
18839139 C-CAAAGGTTTGATGAGCGTTAGGGGGTAAAT-TTGGGGCCAAGTAACCGACA-CCATCGTACAT
492 CTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-ACC-ACACCCATCGCACAT
* * ** *
18839201 CATTGTGCGCATACTCCACCCGCCCCCCCGATCACCGAAACCCCAAT
554 CA-TGTGCGCACAC-CCCCCCGCCCCCCCGATCGTCGGAACCCCAAT
18839248 TGCCGTCGTC
Statistics
Matches: 2001, Mismatches: 231, Indels: 229
0.81 0.09 0.09
Matches are distributed among these distances:
844 124 0.06
845 1 0.00
846 2 0.00
852 3 0.00
853 40 0.02
854 3 0.00
855 35 0.02
856 9 0.00
857 26 0.01
858 1 0.00
859 6 0.00
860 259 0.13
861 282 0.14
862 438 0.22
863 5 0.00
864 26 0.01
865 4 0.00
867 3 0.00
868 2 0.00
870 3 0.00
872 23 0.01
873 1 0.00
877 1 0.00
882 1 0.00
883 67 0.03
884 1 0.00
886 1 0.00
888 3 0.00
891 20 0.01
893 15 0.01
894 8 0.00
895 22 0.01
896 45 0.02
897 21 0.01
898 27 0.01
899 21 0.01
900 12 0.01
901 8 0.00
902 23 0.01
903 48 0.02
904 56 0.03
905 2 0.00
906 2 0.00
907 6 0.00
908 5 0.00
909 152 0.08
910 3 0.00
911 2 0.00
912 1 0.00
913 102 0.05
914 11 0.01
915 19 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (845 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGAGCGGGCAGGG
GCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAAGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTAGCGGTTCGGGATTTTTTAAAATTTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCACACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATCG
TCGGAACCCCAATGCAGCCAGTCAGGATCTGCTCCGGCAATGGTGCCCCAACGAAGAAAAATACG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCATAACCCTCAGTCTGATCCAATCTTAGACT
GGGAATGAACTTCGTATCCCTAAGTCAACCCACGAAACGAGTGTGCGGGGGCGGGATGCGCAAGC
CGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTCGCTACCGTAACCCTCAGTCCAGTCC
Found at i:18840098 original size:706 final size:706
Alignment explanation
Indices: 18838644--18840108 Score: 1604
Period size: 706 Copynumber: 2.1 Consensus size: 706
18838634 AACACTCTGA
* * * *
18838644 CCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCGTAAGCCGATCGACGAAACGAGCGGACG
1 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCACCGACGAAACGAGC-GACG
*
18838709 AGCGGGCGAGCGGGCGGGCACAACGACGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAG
65 AGCGGGCGAGCGGGCGGGCACAACGACGGCCAGAGAGACAGGATGCACAAGCCATGGATCGATAG
* *
18838774 GGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTACGTGCCAATGCCAATTTTTAGTGGCTTG
130 GGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAATTTTTAGTGGCTTG
* * * *
18838839 TAAATTCAACATATGGTTCCCTTTATGGCAGATGATTCGTTTTCTATTTTCTTACGATTTTCAAC
195 TAAATTCAACATATGGTTCCCTTTATGGCAGACGACTCGTTTTCTATTTTCTCACGATTTTAAAC
* * * * *
18838904 TTTTGAGTTCGGTATTTCTTTTATAATTTTTATGGAAGGAGTTTGGCTCCCAAACTTGTTAGACG
260 TTTTGAGTTCAGTATTTCTTTAATAATTTTTATAGAAGGAGTTTGGCTCACAAACTTGGTAGACG
18838969 GATCCCTGTATTTGTTGGTATGCACAAAAATTCAGCTAAAAACTCGAAGCAAGTGTTTACAAGAA
325 GATCCCTGTATTTGTTGGTATGCACAAAAATTCAGCTAAAAACTC--AGCAAGTG-TTACAAGAA
* * *
18839034 TTTTTGTGACCTTTTTGAAAAAGTGTTCCCCATTTTCAAGGAACACTTTAGTGGCTACTTGCAGC
387 TTTTTGTGACCTATTTGAAAAAGTGTTCCCCATTTTCAAGGAACACTTTAATGGCTACTAGCAGC
*
18839099 AAACTTGTAAAATCTCAAATGCTCTTTAAGGGGTGGAGTTCCAAAGGTTTGATGAGCGTTAGGGG
452 AAACTTGTAAAATCTCAAATGCTCTTTAAGGGGTGGAGTTCCAAAGGTTTGATGAGCGATAGGGG
* ** * *
18839164 GTAAATTTGGGGCCAAGTAACCGACACCATCGTACATCATTGTGCGCATACTCCACCCGCCCCCC
517 GCAAATTAAGGGCAAAGTAACC-ACACCATC--ACA-CATTGTGCGCACACTCCACCCGCCCCCC
* *
18839229 CGATCACCGAAACCCCAATTGCCGTCGTCAGGTTCTCCGGCGATGCTCCAGTGATCCTCCGACGA
578 CAATCACCGAAACCCCAATTGCCGTCGTCAGG-T-T----C--TGCTCCAGTGATCCTCCGACCA
** * * *
18839294 TGGTGCCTTGACGAAGAAAAATGCGGCACCAGCACATGGCTGAGCCCAGCATGTGCTGCCGCAAC
635 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAAC
*
18839359 CCTCTGT
700 CCTCGGT
* *
18839366 CCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCCACCGACGAAACGAGC-A-G-
1 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCACCGACGAAACGAGCGACGA
* ** * * * *
18839428 GCGGGCGAGCGGGTGGGCACTGCGTCGGTCGGAGAGACAGGATGCACAA-CCGTGGATCGATAGG
66 GCGGGCGAGCGGGCGGGCACAACGACGGCCAGAGAGACAGGATGCACAAGCCATGGATCGATAGG
18839492 GTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC-ATTTTTA-TGGCTTGT
131 GTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAATTTTTAGTGGCTTGT
* *
18839555 AAATTCAAACA-ATGGTCCCTTAAGCCTTGACGTAAAGTTTAATGGCAAGACGACTCGTTTTTTG
196 AAATTC-AACATATGG----TT---CC----C------TTT-ATGGC-AGACGACTCGTTTTCTA
* *
18839619 TTTT-TCATGATTTTTGAAACTTTTTGCGGTTCAAG-ATTT-TTTAAT-ATTTTT-TCAGAAGGA
241 TTTTCTCACGA-TTTT-AAAC-TTTTG-AGTTC-AGTATTTCTTTAATAATTTTTAT-AGAAGGA
* *
18839679 GTTTTGGC-CATAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCT-TGCACAAAAAAATTC
300 G-TTTGGCTCACAAACTTGGTAGACG-GATCCCTGTA--TTTGTTGG-TATGCAC--AAAAATTC
* *
18839742 AGCTAAAAACTC-G-AAGTG-TACAAG-A-TTTTGTGGCC-ATTTGAAAAAAGTG-TCGCCA-TT
358 AGCTAAAAACTCAGCAAGTGTTACAAGAATTTTTGTGACCTATTTG-AAAAAGTGTTCCCCATTT
18839799 TC-A-G-ACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGTG
422 TCAAGGAACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGTG
* * * *
18839861 TGAGTTCTC-CAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGT-A-C-CAGCA-C-C
487 -GAGTTC-CAAAGGTTTGATGAGCGATAGGGGGCAAAT-TAAGGGCAAAGTAACCACACCATCAC
** *
18839920 -CA-TGTGCGCACAC-CC-CCCGGCCCCCCCAATCGTCGGAACCCCAA-TGCCGTCGGTCAGG-T
549 ACATTGTGCGCACACTCCACCC-GCCCCCCCAATCACCGAAACCCCAATTGCCGTC-GTCAGGTT
* *
18839979 -T-CTCCAGTGATGCTCCGACCATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCG
612 CTGCTCCAGTGATCCTCCGACCATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* *
18840042 AGCCCAGCATGTGCTGTCACAACCTTCGGT
677 AGCCCAGCATGTGCTGCCACAACCCTCGGT
*
18840072 CCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
1 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18840109 TTAGATTGGG
Statistics
Matches: 640, Mismatches: 64, Indels: 94
0.80 0.08 0.12
Matches are distributed among these distances:
706 115 0.18
707 1 0.00
714 1 0.00
715 18 0.03
716 21 0.03
717 89 0.14
718 52 0.08
719 5 0.01
720 1 0.00
721 1 0.00
722 56 0.09
724 1 0.00
725 4 0.01
726 1 0.00
727 57 0.09
728 31 0.05
729 11 0.02
730 4 0.01
731 9 0.01
732 20 0.03
733 10 0.02
734 28 0.04
735 30 0.05
736 30 0.05
737 9 0.01
738 14 0.02
739 1 0.00
740 20 0.03
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (706 bp):
CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCACCGACGAAACGAGCGACGA
GCGGGCGAGCGGGCGGGCACAACGACGGCCAGAGAGACAGGATGCACAAGCCATGGATCGATAGG
GTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAATTTTTAGTGGCTTGT
AAATTCAACATATGGTTCCCTTTATGGCAGACGACTCGTTTTCTATTTTCTCACGATTTTAAACT
TTTGAGTTCAGTATTTCTTTAATAATTTTTATAGAAGGAGTTTGGCTCACAAACTTGGTAGACGG
ATCCCTGTATTTGTTGGTATGCACAAAAATTCAGCTAAAAACTCAGCAAGTGTTACAAGAATTTT
TGTGACCTATTTGAAAAAGTGTTCCCCATTTTCAAGGAACACTTTAATGGCTACTAGCAGCAAAC
TTGTAAAATCTCAAATGCTCTTTAAGGGGTGGAGTTCCAAAGGTTTGATGAGCGATAGGGGGCAA
ATTAAGGGCAAAGTAACCACACCATCACACATTGTGCGCACACTCCACCCGCCCCCCCAATCACC
GAAACCCCAATTGCCGTCGTCAGGTTCTGCTCCAGTGATCCTCCGACCATGGTGCCCCGACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
Found at i:18840118 original size:26 final size:26
Alignment explanation
Indices: 18840082--18840134 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18840072 CCGGTCCGAT
18840082 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18840108 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18840134 C
1 C
18840135 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18841014 original size:26 final size:26
Alignment explanation
Indices: 18840985--18841037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18840975 TCGATCTGAT
*
18840985 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18841011 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18841037 C
1 C
18841038 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18842814 original size:26 final size:26
Alignment explanation
Indices: 18842785--18842836 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18842775 ATGTCCGATA
*
18842785 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18842811 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18842837 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18843693 original size:26 final size:26
Alignment explanation
Indices: 18843655--18843707 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18843645 CTGGTCTGAT
18843655 CTTACACTGGGAATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
* *
18843681 CTTAGACTTGGAATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
18843707 C
1 C
18843708 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:18845567 original size:26 final size:26
Alignment explanation
Indices: 18845529--18845581 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18845519 CTGATCTGAT
*
18845529 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
*
18845555 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
18845581 C
1 C
18845582 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:18847231 original size:897 final size:893
Alignment explanation
Indices: 18839347--18854429 Score: 10959
Period size: 903 Copynumber: 16.8 Consensus size: 893
18839337 GCCCAGCATG
* * * * *
18839347 TGCTGCCGCAACCCTCTGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCCA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * *
18839412 CCGACGAAACGAGCAGGCGGGCGAGCGGGTGGGCACTGCGTCGGTCGGAGAGACAGGATGCACAA
66 CCGACGAAAC--G-A-GC--G-G-GCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAA
* * *
18839477 -CCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
123 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
18839541 TTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTGACGTAAAGTTTAATGGCAAGAC
188 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
18839606 GACTCGTTTTTTGTTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAATATTTTTT
253 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* ** *
18839671 CAGAAGGAGTTTTGGCCATAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAA
318 -GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18839736 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCGCCATTTC
382 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18839801 AGACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
447 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18839865 TTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAG----CA---C-C--
512 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
18839920 CATGTGCGCAC-ACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
577 CATGTGCGCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
18839984 AGTGATGCTCCGACCATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
642 GGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * **
18840049 CATGTGCTGTCA-CAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
707 CATGTGCTG-CAGCAACCCTCGGTCC-ATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
* * *
18840113 ATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGATCAACCGGCC
770 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* ** * ** * *
18840178 AGAGGGGCGGGATGCGCAAGCCGAGTTTCAGTCAGGTCATCCTCTGCGTACTGTCGATCC
835 AGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * ** * * *
18840238 TGTTGCTGCAACACTCGATCCAATCCAATCTTAGACTGGGAATGAAGTTCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
18840303 CCGATGAAACGAGTGAGCAGGCGGGCGGGCGGGCATTACGCCGGCCAAAAAGACGGGATGCGCAA
66 CCGACGAAAC------G-A-GCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAA
* *
18840368 GCCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
123 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18840433 TTTCTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
188 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18840498 GATTCGTTTTCTATTTTTCACTG-TTTTTGAAACTTTTTGCGGTTC-AGATTTTTTACAATTTTT
253 GACTCGTTTTCTATTTTTCAC-GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * *
18840561 TCGGAAGGATTTTTGACCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
317 T-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18840626 AAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
381 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18840691 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
446 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
18840756 GTTCTCGAGGTTTAATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCTCATA
511 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * * *
18840821 TCATGTGCGCACACCCCCCCGGTACCCCCGATCGTCAGAACCCCAATACCGTCGGTCAGGTTCTT
576 TCATGTGCGCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * * * *
18840886 CGGTGATACTCCGGTGATGGAGCCTCGATGAGGAAAAATGCAGCACCAGCACATGCTCGAGCCCA
641 CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * * *
18840951 GTATGTGCTACCGTAACCCTCGGTTCGATCTGATCTTAGACTAGGAATGAACT-TCGTATGCTTA
706 GCATGTGCTGCAGCAACCCTCGG-TCCATCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTA
* * * * *
18841015 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGCCACCCAGCCGGC
769 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** * * * * * **
18841080 CAGAGGGGTGGGATGCACAAATCGGGAATTGGCCGGGT-CCCTTCTGTGTGCTATCGATCC
834 CAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
18841140 TGGTGCAGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18841205 CCTATGAAACGAACGGGCGGGCGGGGGGGCGGGGGGCGGGCACTACGCCGGCCAGAGAGATGGGA
66 CC---G--ACGAA---ACGAGC----GGGC---GGGCGGGCACTACGTCGACCAGAGAGACGGGA
** *
18841270 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGGC
116 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
18841335 AATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAA-CCGTTCACGTGAAGTTTCAT
181 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TTCACGTGAAGTTTCAT
* **
18841399 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTCTTGTGGTTCGAGATTTTTTAA
245 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
* *
18841464 AATTTTTTCGAAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
310 AATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
18841529 GAAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTT-TG------TG-----A-----
374 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
18841575 -CCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
439 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * *
18841639 GGTGTGAGTTCTTGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCATCCA
504 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
18841704 TCGCACATCATATGCACACACCCCCCTCGGCCCCCCCGATCATCGGAACCCCAATCCCGTCGGTC
569 TCGCACATCATGTGCGCACAACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTC
** * ** *
18841769 AGGTTCTCCGACGATGCTCC-GCTGATGGTGCCCCGACGAAGAAAAATACAACACTAGCACAT--
633 AGGTTCTCCGGTGATGCTCCGGC-GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * *
18841831 CCGAAGCCCAGCATGTGCTGCCA-CAACCCTTGGTCCGGTCTGATCTTAGACTGAGAATGAACTC
697 CCG-AGCCCAGCATGTGCTG-CAGCAACCCTCGGTCC-ATCCGATCTTAGACTGGGAATGAACTC
*** * * * *
18841895 CACATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACAAAACGAGTGTACGGGCG
759 TGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * * *
18841960 ATCAGCCGTCCAGAGGGGCGGGATGCGTAAGCCGGGGATTGGCTAGGACCCCCTCTGCATGCTGC
824 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGC
*
18842025 CAATCC
888 CGATCC
* * * * * *
18842031 TGCTACTGTAACCCTCGGTCTGGTCCAATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCTA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18842096 CCGACGAAACGAGCGAGCGGGCGGGCTGGCAAGCACTACGCCGACCAGAGAGACGGGATACGCAA
66 CCGACG-AA--A-CGAGCGGGCGGGC-GG---GCACTACGTCGACCAGAGAGACGGGATGCGCAA
* * * *
18842161 GCCGTGGATCGGTAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGGCAATGCTA
123 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18842226 TTTTTATGGCCTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
188 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18842291 GACTCGTTTTCTATTTTTCACGATCTTCGAAACTTTTTGCGGTTTCG-GATTTTTTAAAATTTTT
253 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGAGATTTTTTAAAATTTTT
* * ** * * *
18842355 TCAGAAAGCTTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTTTTGGCATGCACAAA
317 T-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18842420 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCAACATTCGAAAAAAGTGTCCCCATTT
381 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
18842485 TAGACACTTTAACGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTGTAAGAGGGTGTGA
446 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18842550 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATTGCACA
511 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
18842615 TCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCG-CCGAACCCCAATGCCGTCGGTTAAGTTCTC
576 TCATGTGCGCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * ** ** * *
18842678 CAGCGATGCTTCGGCGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGGACATGCTCGAGCCCA
641 CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
18842743 GCATGTGTTGCAGCAACCCTCGGTCCGGTCTGATGTCCGATATTAGATTGGGAATGAACTCCGTA
706 GCATGTGCTGCAGCAACCCTCGGT-C---C--A--TCCGATCTTAGACTGGGAATGAACTCTGTA
*
18842808 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCG--CA
763 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
18842871 ---AGCC------G-GGGAT--------C---GA-C--CGGGTCCCCCTCTGTGTGCTGCCAATC
828 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATC
18842912 C
893 C
** *
18842913 TGCTACCATAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18842978 CCGACGAAACGAGTGGGGTAGGTGGGCGGGCACTACG-CCAGCCAGAGAGACGGGATGCGCAAGC
66 CCGACGAAACGA---GCG--GGCGGGCGGGCACTACGTCGA-CCAGAGAGACGGGATGCGCAAGC
* * * *
18843042 CGTGGATCGATAAGGTGGTAGGTGGGTTTAGG-AAATCTTCATATTTCTACGTGCCAATGCCATT
125 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
18843106 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
190 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
18843171 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGAATTTTTAAAATTATTTCG
255 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT-TTTTG
*
18843236 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAAA
319 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18843300 ATTCAGCAAAAAACTCGAAGTGTAAAAGATTTTGTGACGATTTGAAAAAAATGTCCCCATTTCAG
384 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
18843365 CCACTTTAATGGCTACTGGTAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTT
449 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
18843430 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
514 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * **
18843495 TGTGCGCACACCCCCCCGG-CCCCCTGATCGCCGGAACCCCAAT-CCGGCCGATCACATTCTCCG
579 TGTGCGCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC-GTCGGTCAGGTTCTCCG
** *
18843558 ACGATGCACCGGCGATGGTGCCCCGAC-AAGGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
643 GTGATGCTCCGGCGATGGTGCCCCGACGAA-GAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* ** * * * *
18843622 CATGGGCTGTC-GCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATAAACTCCGTATGCTTAG
707 CATGTGCTG-CAGCAACCCTCGGTC-CATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
* * * *
18843686 ACTTGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGACC
770 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * * *
18843751 AGAGTGGCGGGATGCGTATGCCGGGGATCGATCGGGTCCCCATCTTCGTCCTGCCAATCT
835 AGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
18843811 TGCTGCCACAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18843876 CTGACGAAACGAGCGGGCGAGCAGGCAGGCACTACGCCGACCAGAGAGACAGGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGC--G--GGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCG
* * * **
18843941 TGGATTGATAGGGTGGTAGGTGGGTTTACGTACATCTTCATATTTCTGTGTGCCAATGCCATTTT
127 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
18844006 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACT
192 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * **
18844071 CGTTTTCTATTTTTTATGATTTTTGAAACATTTTGCGGTTCTG-GATTTTTTAAAATTTTTTCTT
257 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTT-GG
* * * * *
18844135 AAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTATATTTTTTTTGGCATGTACAAAAAAA
320 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
**
18844200 TTCAGCTAAAAACTCGAAGTGTTTAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
385 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18844265 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
450 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * * **
18844330 TCAAGGTTTAATGAGAGATAGGGGACCAATATTACAGCCAAGTACCAGCACCCATCG-----CA-
515 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * * * *
18844389 -TGCTCACACCCCCCCGTCCCCCCCGATTGTCAGAACCCCAATACGGCCGATCAGG-T-T-C---
580 GTGCGCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT
* *
18844447 -A----CCGGCGATGGTGCCCCGGCGATGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA-
645 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
*
18844506 -TG-T---G-----CT--G-------G----T----TGGGAATGAACTCCGTATGCTTAGACTGG
710 GTGCTGCAGCAACCCTCGGTCCATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
* * * *
18844544 GAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGTCGGCCAGAGG
775 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * ** *
18844609 GGCGGGATGCGTAAGCTGGGGATCGATCGGGTCCCCCTCTATGTGCTGTCGATCC
840 GGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * * * *
18844664 TACTTCTGTAACCCTCAGTCCAGTCTGATCTTAGACTGGAAATGAACTCCATATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18844729 CCGAC-AAACCGAGCGGGCGGACGGGCGGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCC
66 CCGACGAAA-CGAGC--G-GG-CGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCC
* * *** *
18844793 GTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATATTCATATTTCTGTGCGCCAATGCTATTT
126 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * * * *
18844858 TTATGGCTTGTAAATTCATGCAACGGTCCTTTAGGCTTTCACGTGAAGTTTCAGGGCAAGACGAC
191 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
18844923 TCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTTGG
256 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTGG
* * *
18844988 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAACA
320 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
18845053 TTCAACTAAAAACTCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
385 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18845118 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTC
450 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
18845183 TCAAGGTTTGATGAGTGATA-GGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCAT
515 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
18845247 GTGCGCAC-ACCCCCTCGACCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGA
580 GTGCGCACAACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * * *
18845311 CGATGCTCCGGCGATGGTGCCTCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTA
644 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * ** * ***** * * *
18845376 TGTGCTACCGCAACCCTCAG-AAAT---AT-TT---TTGGCCCCAAACTTTTTACGGCTCT---C
709 TGTGCTGCAGCAACCCTCGGTCCATCCGATCTTAGACTGGGAATGAACTCTGTA-TGCT-TAGAC
* * * * * * * *
18845430 TAGCG-ATG--CTCCG-ACG-AT-GGTGC--CCCGATGAAGA-AAG-ATGC-GGCAC-CAGCACA
772 T-GGGAATGAACTCCGTATGCCTAAGT-CAACCC-ACGAA-ACGAGCGTGCGGGCGCTCAGC-C-
* ** * * * ** * * * *
18845483 TGCCCA-A-GTCCAGCATGTGC-AGCC-GTAACCCTC-GG------TCTG-AT-CT---GATCT
831 -GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** *
18845531 TAGACTA--GGAA---T--GAAC--TCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAG
1 T-G-CTACCGCAACCCTCGGTCCGGTCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * * * * * * * ** *
18845587 TTAACCCACGGAACGAGCGTGCGGGC--GCTC-A-GCCGGCTAGAGGGGCGGGATGCATAAGCTG
62 CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCG
* *** *** * * * * * ** * *
18845648 CGGATCGATCAGGGCCCTTTCTGCGTGCT-GTCGATCCTGCTACCATAACCCTCGGTC-TGGTC-
127 TGGATCGAT-AGGGTGGTAGGTGGGT-TTAGGC-A-CAT-CT-TCAT-A-TTTCTG-CAT-GCCA
* * * * * ** * * * * **
18845710 -TG--A-TCTTA-GACTAG-GAA-TGA-ACTCTGTATGCC-TAAGCCAATCGACG-AAACG-AGC
182 ATGCCATTTTTATGGCTTGTAAATTCATACAATG-GTCCCTTAAGCC-TTC-ACGTGAA-GTTTC
* ** **** * *** * **** * * ***
18845764 A-GGC-AGGCG-GGCGGGCACTACGTCGGC-CAGA-----GAGACGGGATGC-G--CAAG-CCGT
243 ATGGCAAGACGACTCGTTTTCTA-TTTTTCAC-GATTTTTGAAACTTTTTACGGTTCGAGATTTT
** * **** * * ** * *
18845816 GGATCAATAGGGT-GATAGGTGGGTTTTGGCTCATCTTCATA-TT--TTTACGTG--CCAATGCC
306 TTA-AAATTTTTTGGA-A-G-GAGTTTTGGC-C--C--CAAACTTGGTAGACGTGATCC-TTG-T
* * * * * * ** *
18845875 ATTTTT-ATGGCTTGTA-AATTCATACAATGGTC-CCTTAAGCCTTC--A-CGT-CAAG-TTTCA
360 ATTTTTGTTGGCATGCACAA---A-AAAAT--TCAGCTAAAAAC-TCGAAGTGTACAAGATTT--
*** * *** ** * ** *** *
18845932 T-TG--CAAGCG-GACTCGT-TTTCTATTTTTCATGA-TTTTTGAAACTTTTTACAGGTC-G-AG
416 TGTGACCATTTGAAAAAAGTGTCCCCA--TTTCA-GACACTTT--AA-TGGCTACTGG-CAGCA-
*** * * * * ** *
18845989 ATTTTTTAAAATTCTTTTGGAAGAAG-T-TTTGGCCCCAAACTGGTAGACGTGA-TCCTCGTATT
473 AACCTGTAAAA-TC---T-CAA-ATGCTCTTT-------AA--GG-GGGTGTGAGTTCTCG-A--
** *** * **** * * ** * ***
18846051 TTTTTTCGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAA-AATTTTGTCA-CCATT
519 -GGTTT-G-ATG---AGGGATAGGGGGC-CAATA-T--AAG-GGCCAAGTA-CCAG-CACCCA-T
* * ** * * **** * ** * * * *** * *
18846114 TG-AAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACAGGCAGCAAACCTATAAAATCTCAA
570 CGCACATCA-TGTGCGCA---CA-AC-C--CCCCGGC--C--CCCCCGATCGT-CGGAA-CCCCA
* * * * ** ** *
18846178 ATGCTCTTTAAGGGCGTGTGA-GTTCT-CGAGCT-TTGATGAGG-GATAGG-GGGCC-AC----T
621 ATGC-C------GTCG-GTCAGGTTCTCCG-G-TGATGCTCCGGCGAT-GGTGCCCCGACGAAGA
* * * * * * * * * **
18846233 ATAA-G-GGC-CAAGTATGA-GCACCCATCGCACATCATGTGC-GCA-CAACCCCCCGGCCCCCC
675 AAAATGCGGCACCAGCA-CATGC-CCGA--GCCCAGCATGTGCTGCAGCAA-CCCTCGGTCCATC
** *** * * * * ** * * *
18846292 CGATCGTCGGAAC-CCCAATG-CCGCCAGTCA-GGTT-CTCCGGTG-ATG-CCTCCG---G-CGA
735 CGATC-TTAG-ACTGGGAATGAAC-TCTGT-ATGCTTAGACTGG-GAATGAACTCCGTATGCCTA
* * *** * * * *** ** *
18846347 TGGTGC--CCTGACG-AA-GAAAAATGC---AG--CA-CCAG--AAATATGCTCGA-GC-CCAG-
795 -AGT-CAACC-CACGAAACG-AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
** * * * *
18846397 C-ATG-TCCT-GCAG-CAACCCTC-G-GT-CTCATCCGAT-C
856 CGGGGATCGTCG-GGTC-CCCCTCTGCGTGCT--GCCGATCC
* **** * *
18846431 T--TA--G--A--CTGGGAATGAACTCTGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAG
1 TGCTACCGCAACCCTCGG--TCCGGTCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** * * * * * * *
18846488 TCAACCCACGAAACGACCGTCCGGGC--GCTC-A-GCCGGCCAGAGGGGCAGGATGCGCAAGTCG
62 CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCG
* * ****** ** * * * ** **
18846549 AGGATCTG-TCGGGTCCCCCTCTGCATGCTA-CCA-ATCCTGC-TA--TC-GCAACCCTCGGTTT
127 TGGATC-GATAGGGT-GGTAGGTGGGT-TTAGGCACAT-CTTCATATTTCTGC-ATGC-C--AAT
* * * ** ** * * ** * **
18846607 GGTCCAATCTT-TGAC-TGGGAATGAACTCCGTAT-G--CC-TAAGCCAACCGACG-AAACG-AG
184 -G-CCATTTTTATGGCTTGTAAATTCA-TAC-AATGGTCCCTTAAGCC-TTC-ACGTGAA-GTTT
* * * *** ***** *** ** * ** *
18846664 C-GGGC-GGGCGGGCACTACGTCGACTA-GAGAGACGGGATGCGCAAGCCGTGAATCGATA-GGG
242 CATGGCAAGAC--G-ACT-CGTTTTCTATTTTTCACGATTTTTG-AA-AC-T---T-TTTACGGT
* * ** * * * ***
18846725 TGGTAGGTGGATTTAGGCACATCCTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
296 TCG-AGAT-TTTTTA---A-A-----AT-TTT-T---TG-GAA-G-GA-GTTT-TGGC-CCCAAA
** * * * * ** * *** **
18846790 TTCATACAATGGT-CCCTTAAGCCTTCACGTCAAGTTTCATT-GCAAGCGGACTCGTTTTCTATT
339 --C-T----TGGTAGACGTGATCCTT---GT--ATTTTTGTTGGCATGC--A--C----AAAAAA
* * ** ** * * * * * * *
18846853 TTTCATGATTTTTGAAACTTTTTACAG-GT-CGAGATTTTTTAAAATTCTTTTGGAAGAAGTTTT
384 ATTCA-G---CTAAAAAC--TCGA-AGTGTACAAGATTTTGT--GA-CCATTTGAAAAAAG---T
* * * *** ** * **
18846916 GGCCCCAAACTGGT-AGACGTGATCCTCGT-ATTTTTTTTCGCATGCACAAAAAAATTTAGCTAA
436 GTCCCC--A-T-TTCAGAC---A--CT-TTAATGGCTACTGGCA-G--C----AAACCT-G-T-A
* **** * **
18846979 AAACTCGAAGTGTACAAAATTTTGTCACCATTTGAAAAAAGTGTCCCCA-TT-TCAGACACTTT-
481 AAA-TC------T-C-AAA---TG-C-TC-TTT-AAGGGGGTGT---GAGTTCTC-GA-GGTTTG
* * * ** * *** * * **** *
18847041 A-AAGGCTACAGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCTCGAG
525 ATGAGG-GATAGGGGGCCAA--TATAAGGGC-CAAGTAC-C----A--GC-ACCCA--TCGC-A-
* * * ****
18847105 CTTTGATGAGGGATAGGGGGCCACTATAAGGGCCAAGTATGAGCACCCATCGCAC-ATCATGTGC
574 C----AT----CAT-GTGCG-CAC---AA---CC--CCCCG-GC-CCC--C-C-CGATC--GT-C
* * *
18847169 GCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATG
612 G--GAA-CC-------------------------CCAATGCCGTCGGTCAGGTTCTCCGGTGATG
* * * * * *
18847234 CTCCGGCGATGGTGCCCTGACGAAGAAAAATGCAGCACCAGAATATGCTCGAGCCCAGCATGTCC
649 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
18847299 TGCAGCAACCCTCGGTCTCATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
714 TGCAGCAACCCTCGGTC-CATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
* *
18847364 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTCCGGGCGCTCAGCCGGCCAGAGGGGC
778 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * *
18847429 AGGATGCGCAAGTCGAGGATCTGTCGGGTCCCCCTCTGCATGCTACCAATCC
843 GGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
18847481 TGCTATCGCAACCCTCGGTCTGGTCCAATCTTTGACTGGGAATGAACTCCGTACGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18847546 CCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGACTAGAGAGACGGGATGCGCAAGCCGTGAA
66 CCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
* * **
18847611 TCGATAGGGTGGTAGGTGGATTTAGGCACATCCTCATATTTCTAAATGCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
18847676 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTAATGGCAAGACGACTCGTT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * * *
18847741 TTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTTAAATATTTTTGAAAGGA
261 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT-TTTTTGGAAGGA
* *
18847806 GTTTTGACCCCAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
18847871 CTAAAAACTCGAAGAGTACAAGATTTTGTGACCTTTTGAAAAAAGTATCCCCATTTCA-AGCACT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACT
* * *
18847935 TTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGAGTTCTTGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
18848000 GGTTTGATGAGGGATAAGGGGCCAATCTAAGGGCCATGTACCAGCACCCATTGCACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** ** * *
18848065 GCAC-ACCCCCCGGCCCCCCTGATCGTCGAAACCGTAATGCCACCGATCAGGTTCTCTGGTGATG
584 GCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATG
* * * * *
18848129 CTCCGGTGATGGTGCCTCGGCGAAGAAAAATGCGTCACCAGCACATGCTCGAGCCCAGCATGTGC
649 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
18848194 TGC--CATAACC-C--T-CA---G-TC-----C--GG--T---C-C-G-AT-CTTAGACTGGGAA
714 TGCAGCA-ACCCTCGGTCCATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
* ** * * * * *
18848233 TAAACTTTGTATGCCTAAGTCAATCCACGAAACGTGTGTGCAGGCGCTCAGCCGACCAGAGGGGC
778 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * *
18848298 GGGATGCGCAAGCCGGGGATCGGCCAGGCCCCCCTCTGCATGCTGCCGATCC
843 GGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
*
18848350 TGCTACCGCAACCCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCGCAA-CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18848415 ACCGACGAAACGAGCGGGCGGGCGGGCGAGCTGGCACTATGCCAGCCAGAGAGACGAGATGCGCA
65 ACCGACGAAACGAGCGGGCGGGCGGGC-A-CT---AC-GT-CGA-CCAGAGAGACGGGATGCGCA
* * * * * *
18848480 AGCCGTGGATCGATAGGATGGTAGGTAGGTTTAGGCACCTCTTCATATTTCTACGTGCCAATACC
122 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18848545 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGG
187 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
18848610 CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAACTTTTT
252 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
18848675 TCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAA
317 T-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * ** * * *
18848740 AAGATTCTGCCGAAAACTCGAAGTGTACAAGATTTTCTAACCATTTGAAAAAATTGTCCCCATTT
381 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18848805 TAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGA
446 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18848870 GTTCTCGAGGTTTGATGAGGGATAGGTGGG-TAATATAAGGGCCAAGTACTAGCACCCATCGCAC
511 GTTCTCGAGGTTTGATGAGGGATAGG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * ** * ** *
18848934 ATCATGTGCTCACACCCCCCCGGCCCCCCCGATCACCGGAACCCTAATTTCGTCGGTTAGGTTCT
575 ATCATGTGCGCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * ** * * *
18848999 CCGGTGATGCTCCGCCGATGCTGCGCCGACGAAGAAAAATATGACACCAGCACATTCCCGAGTCC
640 CCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
*** * ** * * *
18849064 AGCATGTGCTATTGGAACCCTCGGTCTGGTTCGATCTTAGGCTGGGAATGAACTCTGTGTGCTTA
705 AGCATGTGCTGCAGCAACCCTCGGTC-CATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTA
* * * * ** *
18849129 GACTGGGAAAGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCATGTAGGTGCTCAGCCGGC
769 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * *
18849194 C-GAAGGGCGAGATGTGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
834 CAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
18849254 TGCTGCCGCAACCTTCGGTCCAGTCTGATCTTGGACTGGGAATGAACTCCGCATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18849319 CCAACGAAACGAGCGGGCGGACGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGG
66 CCGACGAAACGA-------G-C----GGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGC
*
18849384 GCAAGCCGTGGATCGATAGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
119 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
** *
18849449 GATATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCA
184 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
** * *
18849514 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCTGTTC-AGGATTTTTTAAAAT
249 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAAT
* *
18849578 TGTTTTGGAATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTA
313 T-TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
18849643 CAAAAAAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
377 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
18849708 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGT
442 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
18849773 GCGAGTTCTCGAGGTTTGATGAGGGATAGAGGCCCAATATAAGGGACC-AGTACCAGCACCCATC
507 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CCAAGTACCAGCACCCATC
* * * *
18849837 GCACATCATATGTGCACACCCCCCCGGCCCCCCCGATCGTC-GAA-ACC--TGCCGTCGGTCAGG
571 GCACATCATGTGCGCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * * * *
18849898 TTCTCCGATGATGCTCTGGTGATGGTGCCCCAACGATGAAAAATGCAGCACCAGCACATGCCCGA
636 TTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* ** * *
18849963 GCCCAGCATGTGCTGCTGCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
701 GCCCAGCATGTGCTGCAGCAACCCTCGGTCCA-TCCGATCTTAGACTGGGAATGAACTCTGTATG
* * * *
18850028 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTTAGC
765 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
18850093 TAGCCAGACGGGCAGGATGCGCAAGTCGGGGATTGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
830 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** *
18850158 TGCTACCGTAACCCTTGGTCCGGTTTGATCTTAGACTGGGTATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18850223 CCGACGAAATGAGAAGGTGGGCAGGCGGGCACTACG-CTGGCCAGAGAGATC-GGATGCGCAAGC
66 CCGACGAAA--CG-A-GCGGGCGGGCGGGCACTACGTC-GACCAGAGAGA-CGGGATGCGCAAGC
* ** **
18850286 CGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGAAATT
125 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
18850351 TCTATGGCTTGTAAATTCATATAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGA
190 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * *
18850416 CTCATTTTCTATTTTTCACGATTTTCAAAAATTTTTAAGGTTCG-GTATTTTTTAAAATTTTTTT
255 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAAA-TTTTTT
*
18850480 GGAA-AACGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
318 GGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
18850544 ATATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTC
382 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18850609 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGTGTGTGAG
447 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18850674 TTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
512 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18850739 CATGTGCGCAC-ACCCCCCAGCCCCCCCGATCGT-GAGAATCCCAATGTAGCTAGTCAGGTTCTC
577 CATGTGCGCACAACCCCCCGGCCCCCCCGATCGTCG-GAACCCCAA--T-GC-CGTC-GG---TC
* * * *
18850802 TGACGATGCTCCGGCGATGCTCCGGCGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACAT
633 --A-GGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
*
18850867 GCCCGAGCCCAACATGTGCTGTC-GCAA----C---CC-T-CGA---T---CT-GG--T---C-C
695 GCCCGAGCCCAGCATGTGCTG-CAGCAACCCTCGGTCCATCCGATCTTAGACTGGGAATGAACTC
* * * *
18850909 -G-AT-CTTAGACTGGGAATGAACTCCGTATTCCTAAGTTAACCCATGAAACGGGCGTGCGGGCG
759 TGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
** * * * ** * **
18850971 CTCAGCCGTTCGGATGGGCGGGATGCGCTAGCCGGGGATCGATCGGGTCCCCCTCTATGTGTTAT
824 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGC
18851036 CGATCC
888 CGATCC
*** * *
18851042 TGCTGTTGCAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18851107 CTGACGAAACAAGCGGGCGGACGGGTGGGCGGGCACTACGTC-AGCCATAGAGACGGGATGCGCA
66 CCGACGAAACGAGC--G-GG-C----GGGCGGGCACTACGTCGA-CCAGAGAGACGGGATGCGCA
*
18851171 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
122 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * * *
18851236 ATTTTTATGGCTTGTAATTTCATACAATGGTCCTTTAAGCCTTCATGTGAACTTTCATGGCAAAA
187 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* **
18851301 CGACTCGTTTTC------T----ATTTTTGAAACTTTTTAAGGTTC-AGGATTTTCAAAAATTTT
252 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTT
* *
18851355 TCGGAAGGAGTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTCTT-TTGGCATGCACAA
316 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCACAA
* * *
18851419 AAAAATTCAGGTAAAAACTCGAAGTGTACCAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATT
380 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18851484 TCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTG
445 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
18851549 AGTTCTTGAGGTTTGATGAGAGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCTATCACAC
510 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ** * * ** * * *
18851614 ATCATGGGCGCACATCGCCCC-AACCCCTCGATCGTCGAAACTTCAGTGTCGTCGATCAGG----
575 ATCATGTGCGCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* *
18851674 -C-----T-CTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
640 CCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** * ****
18851732 AGCATGTGCTACCA-CAACCCTCGGTCCGGTTTGATGTTAGACCAAAAATGAACT-TAGTATGCT
705 AGCATGTGCT-GCAGCAACCCTCGGTCC-ATCCGATCTTAGACTGGGAATGAACTCT-GTATGCT
* * ** *
18851795 TAGACTGGGAATGAACTTCGTATGCCCAAGTCAACCCACGAAATAAGCGTGCGGGCGCTCAGCAG
767 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** ** *
18851860 GCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGACCACGTCCCCCTCTATGTGCTGCTGATCC
832 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * * * ** *
18851923 TGCTGCTACAACCCTCTGTCTGGTCCAATCTTACACTGGGAATGAACTTTGCATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *** *
18851988 CCGACGAAATGAGCAAGCGGACGGGCAGGCGGTCACTACGTCGGTAAGAGAGACGAGATGCGCAA
66 CCGACGAAACGAGC--G-GG-CGGGC--G-GG-CACTACGTCGACCAGAGAGACGGGATGCGCAA
* * * *
18852053 GCCGTGGGTCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGT-CCAATGCCA
123 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18852117 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAGGAC
188 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18852182 GACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
253 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * *
18852247 CGGAAGGAGTTTTGGCCTCAAACCTGGTAGACGTCATCCATGTA-TTTTGTTGGCATGCACAAAA
318 -GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18852311 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTC
382 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
18852376 AGACACTTTAATGGCTATTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAG
447 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18852441 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACAT
512 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18852506 CATGTGTGCCCACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCC
577 CATGTGCGCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * *
18852571 ---GA--------CAATGGTGACCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAG
642 GGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* ** * * *
18852625 CATGTGCTGCCGCAACCCTCGGTCCAGTTTGATCTTAAACTGGGAATGAACTCTATTTGCTTAGA
707 CATGTGCTGCAGCAACCCTCGGTCCA-TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * * * * *
18852690 CTGGGAATGAACTTCATATGCCTAAGTTAACCCACGAAATGAGCGTGCGGACGTTCAGCCGGCCA
771 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
18852755 GAGGGGCGGGATGCACAAGTCAGGGATCGACTGGGTTCCCCTCTGCGTGCTGCCGATCC
836 GAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
18852814 TGCTACCACCACCCTCGGTCTGGTTCGATCTTATACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18852879 TCGACGAAACGAGCAGGCAGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAA
66 CCGACGAAAC--G-A-GC--G-GG-CGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAA
* * *
18852944 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTACATATTTCTGCAAGCCAATGCCA
123 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18853009 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCGAGAC
188 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
18853074 GACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTAACGGTTCGAGATTTTTTAAAATTTTTT
253 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
** * * *
18853139 CAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATACTTGTATTTGTT-TTGGCATGCATAAA
318 -GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCACAAA
* * * *
18853203 AAAATTCAGCCAAAAACTTGAAGTGAAGAAGATTTTGTGA-CATTTGAAAAAAGTGTCCCCATTT
381 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18853267 AAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGA
446 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18853332 GTTCTCGAAGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCACACA
511 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18853397 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCAGTCAGGTTCTC
576 TCATGTGCGCACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * *
18853462 TGGTGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACTTGCCCGAGTCCA
641 CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
18853527 GCATGTGTTGTC-GTAACCCTCGATCCAGTCTGATTTTAGACTGGGAATGAACTAC-GTATGTTT
706 GCATGTGCTG-CAGCAACCCTCGGTCCA-TCCGATCTTAGACTGGGAATGAACT-CTGTATGCTT
* * *
18853590 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGA
768 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** * * * * *
18853655 CTAGAGGGGTGGGATGCGTGAGCCGGGGATCGAGT-GGATCCCCTTTTACGTGTTGCCGATCC
833 CCAGAGGGGCGGGATGCGCAAGCCGGGGATC--GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
18853717 TGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGAAATGAACTCCGTATGGCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18853782 CCGACGAAATGAACGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
66 CCGACG--A--AAC-GA---GCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAA
* *
18853847 GCCGTGGATCGATAGGGGGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
123 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
18853912 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
188 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
18853977 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTAACGGTTC-AGGATTTTTTAAAATTTTT
253 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTT
* *
18854041 TCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
317 T-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
18854106 AAAATTCAGCTAAAAACTCAAAGTGAACAAGATTTTGTGACCTTTTGAGAAAAGTGTCCCCATTT
381 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
18854171 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
446 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
18854236 GTTATCGAGGTTTAATGAGGGATAGGGGGCCAATATACGGGCCAAGTACCAGCACCCTTCGCACA
511 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
18854301 TCATGTGTGCAC-ACCCCGCCCGCCCCCCCG-TCGTCGGAACCCCAATGCCG-C---CA-G---T
576 TCATGTGCGCACAACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * ** * *
18854356 CAGGT--T-CTCCGGCGGTTGTGCCCCGGTGAAGAAAAATGGGGCACCAGCACATGCCCGAGCCT
640 CCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
18854418 AGCATGTGCTGC
705 AGCATGTGCTGC
18854430 CACAACTCTC
Statistics
Matches: 11388, Mismatches: 1942, Indels: 1724
0.76 0.13 0.11
Matches are distributed among these distances:
842 4 0.00
843 7 0.00
844 6 0.00
845 24 0.00
846 14 0.00
847 27 0.00
848 18 0.00
849 9 0.00
850 8 0.00
851 10 0.00
852 46 0.00
853 602 0.05
854 58 0.01
855 86 0.01
856 12 0.00
857 10 0.00
858 12 0.00
859 45 0.00
860 8 0.00
861 14 0.00
862 53 0.00
863 2 0.00
864 2 0.00
865 5 0.00
866 3 0.00
867 12 0.00
868 1 0.00
869 126 0.01
870 136 0.01
871 91 0.01
872 12 0.00
873 8 0.00
874 2 0.00
875 8 0.00
876 18 0.00
877 507 0.04
878 758 0.07
879 175 0.02
880 95 0.01
881 272 0.02
882 162 0.01
883 32 0.00
884 439 0.04
885 47 0.00
886 16 0.00
887 14 0.00
888 170 0.01
889 33 0.00
890 552 0.05
891 873 0.08
892 667 0.06
893 94 0.01
894 17 0.00
895 145 0.01
896 489 0.04
897 100 0.01
898 299 0.03
899 199 0.02
900 28 0.00
901 224 0.02
902 139 0.01
903 1068 0.09
904 482 0.04
905 70 0.01
906 19 0.00
907 471 0.04
908 13 0.00
909 311 0.03
910 153 0.01
911 3 0.00
913 2 0.00
914 1 0.00
915 12 0.00
916 4 0.00
919 2 0.00
920 2 0.00
921 4 0.00
923 2 0.00
924 3 0.00
926 4 0.00
927 1 0.00
929 5 0.00
930 2 0.00
931 1 0.00
933 4 0.00
934 1 0.00
935 2 0.00
936 5 0.00
937 6 0.00
940 3 0.00
941 4 0.00
942 4 0.00
943 2 0.00
944 2 0.00
946 3 0.00
947 7 0.00
948 1 0.00
949 1 0.00
950 3 0.00
951 1 0.00
952 4 0.00
954 1 0.00
955 6 0.00
956 2 0.00
957 1 0.00
958 1 0.00
959 7 0.00
960 3 0.00
961 1 0.00
962 4 0.00
963 5 0.00
964 6 0.00
965 14 0.00
966 4 0.00
967 6 0.00
968 3 0.00
969 4 0.00
970 3 0.00
971 5 0.00
972 6 0.00
973 2 0.00
974 3 0.00
975 3 0.00
976 7 0.00
977 4 0.00
978 6 0.00
979 5 0.00
980 1 0.00
981 2 0.00
982 9 0.00
983 5 0.00
984 8 0.00
985 6 0.00
986 9 0.00
987 6 0.00
988 1 0.00
990 1 0.00
992 2 0.00
993 12 0.00
994 1 0.00
995 2 0.00
996 4 0.00
997 5 0.00
998 8 0.00
999 6 0.00
1000 1 0.00
1001 6 0.00
1003 3 0.00
1004 11 0.00
1005 3 0.00
1006 4 0.00
1007 9 0.00
1008 5 0.00
1011 1 0.00
1012 5 0.00
1016 1 0.00
1018 1 0.00
1019 6 0.00
1020 9 0.00
1021 17 0.00
1022 7 0.00
1023 6 0.00
1024 337 0.03
1025 416 0.04
1026 376 0.03
1027 569 0.05
1028 408 0.04
1029 596 0.05
1030 432 0.04
1031 429 0.04
1032 489 0.04
1033 393 0.03
1034 272 0.02
1035 360 0.03
1036 340 0.03
1037 298 0.03
1038 307 0.03
1039 347 0.03
1040 370 0.03
1041 253 0.02
1042 330 0.03
1043 321 0.03
1044 275 0.02
1045 308 0.03
1046 306 0.03
1047 238 0.02
1048 403 0.04
1049 152 0.01
1050 307 0.03
1051 273 0.02
1052 275 0.02
1053 150 0.01
1054 226 0.02
1055 470 0.04
1056 182 0.02
1057 199 0.02
1058 193 0.02
1059 259 0.02
1060 345 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACAACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCT
CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CAGCAACCCTCGGTCCATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
ATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:18847361 original size:26 final size:26
Alignment explanation
Indices: 18847325--18847377 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18847315 CTCATCCGAT
*
18847325 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18847351 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18847377 C
1 C
18847378 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18850038 original size:26 final size:26
Alignment explanation
Indices: 18850002--18850054 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18849992 CCAGTCTGAT
18850002 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18850028 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18850054 C
1 C
18850055 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18850821 original size:11 final size:11
Alignment explanation
Indices: 18850805--18850831 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
18850795 GGTTCTCTGA
18850805 CGATGCTCCGG
1 CGATGCTCCGG
18850816 CGATGCTCCGG
1 CGATGCTCCGG
18850827 CGATG
1 CGATG
18850832 GTACCCCGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.11, C:0.33, G:0.37, T:0.19
Consensus pattern (11 bp):
CGATGCTCCGG
Found at i:18853597 original size:26 final size:26
Alignment explanation
Indices: 18853561--18853612 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18853551 CCAGTCTGAT
18853561 TTTAGACTGGGAATGAACTACGTATG
1 TTTAGACTGGGAATGAACTACGTATG
*
18853587 TTTAGACTGGGAATGAACTCCGTATG
1 TTTAGACTGGGAATGAACTACGTATG
18853613 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (26 bp):
TTTAGACTGGGAATGAACTACGTATG
Found at i:18856226 original size:26 final size:26
Alignment explanation
Indices: 18856197--18856247 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18856187 CCGGTCTGAT
*
18856197 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
18856223 CTTAGATTGAGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
18856248 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18858562 original size:901 final size:898
Alignment explanation
Indices: 18854453--18863467 Score: 11773
Period size: 901 Copynumber: 10.0 Consensus size: 898
18854443 CTGGTCTGAT
* * * ** * * *
18854453 CTAAGTCAACCCATGAAACGAACGTGCTGGCGCTCAGCCGTTCAGATGGGCGGGATGCGCAAGCT
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * * * * * * *
18854518 GGGGATCGATCGGGTCCACATCTGCGTGCTGCCGATCATGCTGCAGCAATCCTCGATCCGG-TCA
66 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTTCA
** * * * *
18854582 GATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACTGATGAAACGAGTGGGCGGACGGGC
131 -ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--AGGCGGGCGGGC
** *
18854647 AGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTTGTGGATTGATAGGGTGGTAGGTG
193 -GG-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
18854712 GGTTTAGGCACATCTTCATATTT-TAGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACA
256 GGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *** *
18854776 ATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCCCAAAT
320 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * * * * *
18854841 TTTGAAACATTTTGCGATT-GAAGATTTTTTGAAATTTTTTCGGAATGAGTTTTGGCCCCAAACT
385 TTTAAAACTTTTTACGGTTCG-AGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* *
18854905 TGGTAGACGAGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
449 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
18854970 TACAAGATTTTGTGTCCATTTGCAAAAAGTGTCCCCATTTTAGACACTTTAATGGTTACTGGCAG
514 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
18855035 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
579 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* * *
18855100 AGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTTCGCACACCCCCCGGTCCC
644 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* ** *
18855165 CCCGATCGTCGGAACCCCAATGTCGTCGGTCAGG-T-T----C--T-CT--GGTAATGGTGACCC
709 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* * * * * * *
18855219 GATGAAGAAAAATACAGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCTGTAACCCTCGGTCC
774 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * * *
18855284 AGTTTGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTCTGC
839 -GGTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18855345 CTAAGTTAACCCACGAAAGGAGCGTGCGGCCGCTCAGCCGGCCAGAAGGGCAGGATGCGTAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * *
18855410 GGGGATCGGTCGAGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCGATCTGGTTCA
66 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTTCA
* * * * *
18855475 ATCTTATACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGACG
131 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--AGGCGGGCGGGC-
* * *
18855540 GGCGGGCACTACGTCGGCCAGGGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGATAGGTGG
193 GG-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
18855605 GTTTAGGCACATCTACATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
257 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
18855670 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG-TATT
322 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT-TT
* * * ** * * *
18855734 TCAAAACTTTTTACAGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCTCAAACTTA
386 TTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* *
18855799 GTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTA
451 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
18855864 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGCCAACC
516 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * **
18855929 AGCATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCAAGGTTTGATGGGGGATACCG
581 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* * *
18855994 AGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATAACCCCCCCGGCACC
646 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CA-CCCCCCGGCCCC
* * ** * *
18856059 CCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCTAGCGATGCTGCCTC
709 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* * * * *
18856124 GACGAAGAAAAATACGGCACCAGCACGTGCCTGAGCCCAGTATGTGCTGTCGCAACCCTCGGTCC
774 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
18856189 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGAGAATGAACTCCGTATAC
839 GGTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18856250 CTAAGTCATCCCACGAAAACAAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCTA-GATGTGCAAG
1 CTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-AGGATGCGCAAG
* * * * * *
18856314 TCGGGGATCGG-CAGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGAAACCCTCGGTCTGAT
64 CCGAGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGT
* * *
18856378 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACG-AGCGGGTTGGCG
128 TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAG-GCG--GGCG
* *
18856442 GGTGGGCGGGTACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
190 GG-CGG-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* **
18856507 GTGGGTTTAGGCGCATCTTCATATTTTCTGCATAACAATGCCATTTTTATGGCTTGTAAATTCAT
253 GTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
18856572 ACAGTGGTCCCTTAAGCCTTCACGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
317 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * *
18856637 ATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGACTTTTGGCCACGAA
382 ATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * *
18856702 CTTGTTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAGG
447 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
18856767 TGTATAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
512 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
18856832 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGAT
577 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
*
18856897 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGC
642 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
* * * * *
18856962 CCCCCCGATTGCCGGAACCCCAATGCCGTCGCTCAGGTTCTCAGGCGATGCTCCGGCGATGGTGG
706 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * *
18857027 CCCGACAAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGTATGTGCTGCCGTAACCCTCGG
771 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
18857092 TCCAGTCCGATCTTAGACT-GGAATGAACT-CGTATGCTTAGACAGGGAATGCACTCCATATG-
836 TCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * ** *
18857153 CTAAGTCAACCCACGAAACAAGCGTGCCGGCGCTCAGTGGGCCA-AAGGGCAGGATGCGCAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * ** * *
18857217 -AGGCATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTACTATTGCCACCCTCTGTCTGG-TC
66 GAGG-ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTTC
* *
18857280 AAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGAG
130 -AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-AG-GCGGGCGGG
* ** * * * *
18857345 AGGGCAGGCACTACGTCGGTTAGAGAGACGTGATGCGAAAGCCGTGGATCGATGGGGT-ATAGGT
192 CGGG--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
18857409 GGGTTTAGGCACATCTTCATATTTTTGCATGCCAAAGCCATTTTTGTGGCTTGTAAATTCATACA
255 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
18857474 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
320 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
18857539 TTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGACTTTTGGCCACGAACTT
385 TTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
*
18857604 GTTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
450 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
18857669 ACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
515 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
**
18857734 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
580 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* *
18857799 GGGCCAATATACGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCC
645 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
*
18857864 CCAATC-TCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
710 CCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* * * * * *
18857928 GACAAAGAAAAATGCGACACCAACACATGCCCAAGCCCAGCATGTGCTGTCGTAACCCTCGGTCC
774 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
** * * *
18857993 AATTCGATCTTAGACT-GAAATGAACTCCGTATGCTTAGACAGGGAATGCACTCCGTATGC
839 -GGTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* ** * * * * * *
18858053 CTAAGTCAACCCATGAAATAAGCGTGCCGACGCTCAGTCGACCAGAGGGGTAGGATGCGCAAGTC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * ** * * * ***
18858118 GAGGATCGGTCGGGTCCCTCTCTGTGTGCTATCGATCCTACTACTGCAACCCTCAGTCCAATTCA
66 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTTCA
* *
18858183 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAAAGGGTGGGCGGGCG
131 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-AA-GGCGGGCGGGCG
* * *
18858248 GGTGGTCACTACATCGACCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
194 GG-GG-CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * * *
18858313 GTTTAGGCACATCTTCATATTTCTACGTCCCAATGCCATTTTTATGACCTGTAAATTCATACAAT
257 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
18858378 GGTCCCTTAAG-CTTCACGTGAAATTTCCTGGCAAGACGACTCGTTTTATATTTTTCATGATTTT
322 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** * * *
18858442 CGAAAC-TTTTAGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTC
387 TAAAACTTTTTA-CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * ** * *
18858506 TTAGATGTGATCCTTGTATTTTTTTCAGCATGCTCAAAAAAATTCAACTAAAAACTCGAAGTGTA
451 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
18858571 CAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
516 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
18858636 AACCTGTGAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGTTAGGG
581 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* *
18858701 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACT-TGCGCACACCCCCCCGACCCC
646 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-TGTGCGCACA-CCCCCCGGCCCC
* * * *
18858765 CCCGATCGTCGGAACCCCAATGCCGTAGGTTAGGTTCTCCGGCGATGCTCCAGTGATGGTGCCCC
709 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
** * * * * *
18858830 GGTGAAGAAACATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGTAAACCTCGGTCC
774 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * ** *
18858895 GGTCTGATCTTAGACTGCGAATGAACTCCATTTGCTTAGACTACGAATGAACTCTGTATGC
839 GGTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18858956 CTAAGTCAGCCCACGAAACGAGCGTACGTGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * * * * * *
18859021 -AGGGATCGATCAGGCCCCCCTCTGCGTGTTGCCAATCCTGCTGCCGTAACCCTCGGTCCGGTCC
66 GA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTTC
* * *
18859085 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GCAGGCAGGC--
130 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGGCGGGCGGGCGG
* * * * *
18859146 GGGCATTATGTCGGCCAGAGAGACGGGATGCGCAAGCCATGAATCGATAGCGTGGTAGGTGGGTT
195 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
18859211 TAGGCACATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGT
260 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
18859276 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
325 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAA
* * * *
18859341 AACTTTTTGCGGTTCAAGATTTTTTGAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
390 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
18859406 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAGAAAATTCAGCTACAAACTCGAAGTGAACAAG
455 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
18859471 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAACAAACT
520 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
18859536 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
585 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* *
18859601 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGGCCCCCCCAAT
650 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * *
18859666 C-TCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGACGA
715 CGT-CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGA
* * * * * *
18859730 AGAAAAATGAGACACCATCACATGCCCGAGCCCAGCATGTGGTGCCGCAACCCTCGGTCTGATCC
779 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-C
* * *
18859795 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGACCTCCATGTGC
843 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * ** *
18859851 CTAAGTCAACCTACGAAATGAGTGTGCGGGCGCTCAGTCGACCAGAGGGGTGGGATGCGTAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * *
18859916 -AGGGATCGGTCGGGTCCCACTCTACGAGCTGCCGATCCTACT-CC-CAGGACCCTCGGTCTGAT
66 GA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCA--ACCCTCGGTCTGGT
* *
18859978 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GCGGGCGGAC
128 TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGGCGGGCGGGC
* * *
18860041 --GGGCCCTACGTCGGCCAGAGAGACAGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
193 GGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
18860104 TTTAGGCATATCTTCATAATTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATG
258 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
18860169 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTT
323 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * *
18860234 GAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGT
388 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * *
18860299 AGACATTATCCCTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
453 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
18860364 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
518 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
18860429 CCTGTAAAATCTTAAATGCTCTTTAAGGGTGCGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
583 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * *
18860494 CCAATATAAGGGCCATGTACCAGCATCCATCGTACATCATGTGCGCACAACCCCCCGGCCCCCCC
648 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCC
* * * *
18860559 GATCG-CTGGAACTCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGGGATGGTGCACCGA
712 GATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
*
18860623 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGG
776 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
18860688 TCCATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
841 TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * ** *
18860746 CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGCGTAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * * **
18860811 GGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCAGTCTAGTTTG
66 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTTCA
* * * * * * *
18860876 ACCTTAGATTGGTAATAAACTCCGTATGCCT-----------CGAAATG-A-GCGAGCAGGC--G
131 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGGCGGGCGGGCGGG
* * *
18860926 GGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTT
196 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* ** *
18860991 AGGCACATCTTTATATTTCTGTGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
261 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * *
18861056 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACCCGTTTTCTATTTTTCACGATTTTCAAG
326 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAA
* *
18861121 ACATTTTACGGCTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
391 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
18861186 CGTAATCCTTGTATTTTTGTTGGCATGCA-AAAAAACATTCAGCTAAAAACTCAAAGTGTACGAG
456 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAG
* * * *
18861250 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAACGGCTACTGCCTGCAAACC
520 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
** *
18861315 CATAAAATCTCAAATGCTCTTTTAAAGGGGTGTGAGTTCTCGAA-GTTTGATGAGGGATAGGGGG
585 TGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTC-AAGGTTTGATGAGGGATAGGGGG
* *
18861379 CCAACATACGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTTCTCGGCCCCC
648 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC--C-CGGCCCCC
* * * * *
18861444 CCGATCGTCAGAACCCCAATGCCATCGGTCAGGTTCTCCGACAATGCTCCGGTGATGGTGCCCCG
710 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
* * * * *
18861509 ATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGGCGCAACCCTCGGTCCA
775 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * *
18861574 GTCCGATCTTAGTCTGGGAATGAACTCCGCATGCTTAGACTAGGAATGAACTCCGTATGC
840 GT-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
** * * *
18861634 CTAAGTCAACCCGTGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * *
18861699 GAGGATCGGTCGGGTCCCCCTCTGCATGCGGCCGATCCTGCTACCGCAACCCTCGATC-AGATCT
66 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTTC-
* * **
18861763 TATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGATGGGCGGGC
130 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--AGGCGGGCGGGC
* * * * *
18861828 --GGGCACTACGTCGGCTAGAGTGACGAGATGCGCAAGTCGTGGATCGGTAGGGTGGTAGGTGGG
193 GGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
18861891 TTTAGGCACCTCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATG
258 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * *
18861956 GTCCCTTAAGCCTTCATGTCAAGCTTCATGGCAAGACGACTCGTCTTCTATTTTTCCTTATTTTT
323 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
** * *
18862021 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAAAGTTGG
388 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC-CAAACTTGG
* *
18862086 TAGGCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTAC
452 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
18862151 AAGATTTTGTGACCATTTGAAAATAGTGTCCACATTTCAAACACTTTAACGGCTACTGGCAGCAA
517 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
18862216 ACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
582 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
*
18862281 GCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCC
647 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCC
* * ** * * * *
18862346 CGATCGTCGAAACCCTAATGCCACCGGTCAGGTTGTCCGGTGATGCTCCGACGATGGTGCCCCGG
711 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * * * * * * * *
18862411 GGAAGAAAAATGCGGCACCAGCACCTACCTGAGCCCAGCATGTGCTACCGCAACCCTTGATTCAG
776 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * *
18862476 TCTAATCTTAGACTGGGAATGAACTCCGTATGCCTACATTGGGAATGAACTCCGTATGC
841 TC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
18862535 CTAAGTCAACGCACGAAACAAGCATGAGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCATGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * ** * * * * * * *
18862600 GGGGATCGGCCAGGTCCCCCTCTATGTGTTGCTGATCCTGTTGCAGGAACCCTCGGTCTGGTCCA
66 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTTCA
* * *
18862665 ATCTTAGACTGGGAATGAACTGCATATGCATAAGCCAACCGACGAAACG-A-GCGGGCGGGCGAG
131 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGGCGGGCGGGCG-G
* * * * *
18862728 CGGGCATTATGCCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
195 -GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18862793 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
259 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
18862858 TCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTCTCATGATTTTTT
324 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
* * * * *
18862923 AAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTC-GAAAAGAGTTTTGGCCCTAAACATGGT
389 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGT
* *
18862987 AGGCATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
453 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
18863052 AGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATCGC-ACCTGGCAGCAA
518 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA-CTGGCAGCAA
* * * * *
18863116 ACCTGTAAAATGTTAAATGCTCTTTAAGGGTGTGTGAGTTCTCGATGTTTGATGAGGGATAGGGG
582 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* *
18863181 GCCAATATAAGGG-CAAGTACCAGCACCCATCCTACATCACACATCATGTGTGCACACCCTCCCG
647 GCCAATATAAGGGCCAAGTACCAG----CA-CC--CATCGCACATCATGTGCGCACACCC-CCCG
* * * *
18863245 GCCCCCCCGATCGTCGGAACCCCAATGCCGGCGGTCAGGTTCTCTGACTATGCTCCGGCGATGGT
704 GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT
* * *
18863310 -CCCTCGATGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCAGCACGTGCTGCCGCAACCCT
769 GCCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
18863374 TGGTACAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCAG-A
833 CGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC-GTA
18863438 TGC
896 TGC
*
18863441 CTGAGTCAACCCACGAAACGAGCGTGC
1 CTAAGTCAACCCACGAAACGAGCGTGC
18863468 TAGAGGGGCG
Statistics
Matches: 7162, Mismatches: 849, Indels: 210
0.87 0.10 0.03
Matches are distributed among these distances:
883 6 0.00
884 382 0.05
885 81 0.01
886 3 0.00
887 129 0.02
888 189 0.03
892 615 0.09
893 6 0.00
894 45 0.01
895 1100 0.15
896 459 0.06
897 16 0.00
898 151 0.02
899 459 0.06
900 278 0.04
901 1197 0.17
902 248 0.03
903 520 0.07
904 170 0.02
905 146 0.02
906 576 0.08
907 385 0.05
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTTCA
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGGCGGGCGGGCGGG
GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAA
ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
Found at i:18860722 original size:26 final size:26
Alignment explanation
Indices: 18860693--18860745 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18860683 TCCGGTCCAT
*
18860693 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18860719 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18860745 C
1 C
18860746 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18861610 original size:26 final size:26
Alignment explanation
Indices: 18861581--18861633 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18861571 CCAGTCCGAT
* *
18861581 CTTAGTCTGGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
18861607 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
18861633 C
1 C
18861634 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:18863598 original size:26 final size:26
Alignment explanation
Indices: 18863559--18863611 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18863549 CCAATCCGAT
* *
18863559 CTTAGACTAGGAATGAATTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18863585 CTTAGACT-GTGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
18863611 C
1 C
18863612 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18870596 original size:26 final size:26
Alignment explanation
Indices: 18870560--18870610 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18870550 GATCTGATCT
18870560 TAGACTAGGAATGAACTCCGTATGCA
1 TAGACTAGGAATGAACTCCGTATGCA
18870586 TAGACTAGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
18870611 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCA
Found at i:18870681 original size:185 final size:184
Alignment explanation
Indices: 18870356--18870769 Score: 535
Period size: 185 Copynumber: 2.2 Consensus size: 184
18870346 CTGTTGCAGA
* * * * *
18870356 CCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGGATGCTTAGACTGGTAATGAACTCTG
1 CCTC-GTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAGACTGGTAATGAACTCCG
** * * * * * **
18870421 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCTAGCGGGGCGGGATGGGC
65 TATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCAC
* * * *
18870486 AATCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGTTGATCCTGCTACCGTAAC
130 AATCCGGGGATCAATCGGGTCCCCCTCTGCATACCGTTGATCCTGCTACCGCAAC
18870541 CCTCAGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAGACTAGG-AATGAACTCC
1 CCTC-GTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAGACT-GGTAATGAACTCC
* *
18870605 GTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGTGCTCAGCCGACCAGAGGGGCGGGATGCA
64 GTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCA
** * *
18870670 CAAGT-CGGGGATCAATCGGGTCCCCCTCTGTGTACCGTTGATCTTGCTGCCGCAAC
129 CAA-TCCGGGGATCAATCGGGTCCCCCTCTGCATACCGTTGATCCTGCTACCGCAAC
* *
18870726 CCTCGATCTGGTCTGATCTTAGACTAAGAATGAACTCCGTATGC
1 CCTCG-TCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGC
18870770 CTAAGCCAAC
Statistics
Matches: 199, Mismatches: 27, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
184 1 0.01
185 195 0.98
186 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
CCTCGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAGACTGGTAATGAACTCCGT
ATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACA
ATCCGGGGATCAATCGGGTCCCCCTCTGCATACCGTTGATCCTGCTACCGCAAC
Found at i:18871495 original size:26 final size:26
Alignment explanation
Indices: 18871459--18871510 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18871449 CAGTTCGATG
18871459 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
18871485 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18871511 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18872416 original size:26 final size:26
Alignment explanation
Indices: 18872365--18872417 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18872355 CTGGTCCAAT
*
18872365 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18872391 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18872417 C
1 C
18872418 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18872600 original size:907 final size:892
Alignment explanation
Indices: 18870529--18876252 Score: 7202
Period size: 907 Copynumber: 6.4 Consensus size: 892
18870519 CTGTTGATCC
* * * * * *
18870529 TGCTACCGTAACCCTCAGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAGACTAG
1 TGCTGCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
18870594 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGTGCTCAGCC-GACCAGAG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAG
* * * * * *
18870658 GGGCGGGATGCACAAGTCGGGGATCAATCGGGTCCCCCT-CTGTG-TACCGTTGATCTTGCTGCC
130 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTAC-GTGCTACC---GATCCTGCTACC
* * ** *
18870721 GCAACCCTCGATCTGGTCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGACAA
191 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
18870786 AACGAGCGAGCGGGCGGGCGGGCAATACG-TCGG-CAAGAGAGGCGGGATGCGCAAGCAGTGGAT
256 AACGAGCGAGCGGGCGGGCGGGCACTACGCT-GGCCAA-AGAGACGGGATGCGCAAGCCGTGGAT
* * *
18870849 CAATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTATGTGCAAATGCCATTTCTT-TG
319 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT-TTATG
* * *
18870913 GCTTGTAAATTCATACAATGGTCCCGTAAGCTTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
383 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
18870978 TTCTATTTTTCATGATTTTTGAACCTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAAGA
448 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
18871043 GTTTTGGCCCCAAACTTGGTAGATGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAGTTCAG
513 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
18871108 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
578 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTT
*
18871173 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
642 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * *
18871238 GTTTGATAAGAGATAGGGGG-TAATATAAGGGCCAATTACCAGCACCCATCACACATCATGTGCG
707 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** * * * *
18871302 CACACCCCCCCCGGCCCGTCCGATCGTCGGAACCCCAATGCCGACAGTCAGGTTCTCCGATGATG
772 CACA-CCCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCC---GATG
* * **
18871367 CTCCGGTGATGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
833 -T-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * ** * *
18871429 TGTTGTCGCAACCCTCGGTCCAGTTCGATGTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
18871494 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGCACTCAGCC-GCCCAGAG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAG
* * * * * *
18871558 GGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCACTCTACGTGCTATCAATCCTGCTATCAC
130 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CC-CTCTACGTGCTACCGATCCTGCTACCGC
* * * * *
18871623 AACCTTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGATGAAA
193 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
18871688 CGAGCGAGCGGGCGGGCGGGCACTACGCTGGCCAAAGACACGGGATGTGCAAGCCGTGGATCGAA
258 CGAGCGAGCGGGCGGGCGGGCACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
18871753 AGGGTGGTAGGTGGGTTTCGACACATCTTCATATTTCTATGTGCCAATGCCATTTTTATCGCTTG
323 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTG
* * * * *
18871818 TAAATTCATACAATGGTCCTTTAAGCCTGCACGTGAAGTTTCACGACAAGACGACTCATTTTCTA
388 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
18871883 TTTTTCATGATTTTCGAAACTTTTTGA-GGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTT
453 TTTTTCATGATTTTTGAAACTTTTT-ACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * *
18871947 TGGGCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAACTTCAGCTAA
517 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
18872012 AAACTCGAAATGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAAT
582 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC-CATTTCAGACACTTTAAT
* *
18872077 GGCAACTGGCAACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTC
646 GG---CT----ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
18872142 GAGTTTTGATGAGGGATAGGGGGTCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGT
704 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
18872207 GTGCACACCCCCCCGACCCCCCCGATCGCCGAAACCACAATGCCGCCGGTCAGGTTCTCCGGCGA
769 GCGCACACCCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCT-C--CGA
** * *
18872272 TGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCACG
831 TG-TC-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * **
18872336 TGCTACCGTAAACCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGG
1 TGCTGCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
18872401 GAATGAACTCCGTATGCGTAAGTCAACCCACAAAATGACCGTGCGGGTGCTCAGCCAGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGG
* * ** * * * *
18872466 GGTGGGATGCACAAGCCGGGGATCGGCCGGGTCCCATGCTATGTGCTACCGAACCTGCTACTGGA
131 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC-T-CTACGTGCTACCGATCCTGCTACCGCA
* ** * *
18872531 ACCCTCGGTTCAATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAC
194 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
18872596 GAGCGGGCGGCGGGCGGGCGGGCACTACG-TCGACCAGAGAGACGGGATGTGTAAGCCGTGGATC
259 GAGC--G-AGCGGGCGGGCGGGCACTACGCT-GGCCAAAGAGACGGGATGCGCAAGCCGTGGATC
*
18872660 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT-TGCCAATGCCATTTTTATGG
320 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ATGTGCCAATGCCATTTTTATGG
* *
18872724 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTA
384 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* ** *
18872789 TCTATTTTTCATGATTTTTGAAACATTTTAAAGTTAAGGATTTTTTAAAATTTTTTCGGAAGGAG
449 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
18872854 TTTTAGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
514 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
18872919 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTTAGACACTTTA
579 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTA
**
18872984 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTTAGGT
644 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
18873049 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
709 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * * * * *
18873114 CA-CCCCTCGGTCCCCCCGATCGTCGGAATCCCAATGCCACTGTTTAGGTTCTCCG--GT----G
774 CACCCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGTCGGCG
18873172 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
839 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
** * * * *
18873226 TGCT-CTCGTAACCCTTGGT-TCAGTCCGATCCTAGACTGGGAATGAACTCTGTATGCTTGGACT
1 TGCTGC-CGTAACCCTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
18873289 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCAGGCACTCAGCCGGCCAGA
64 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGA
* * * *
18873354 GGGGCGGGAT------GTC-GGG-TC---C----CCCTCTGCGTGCTGCCGATCCTGCTATCGCA
129 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTACGTGCTACCGATCCTGCTACCGCA
* * *
18873404 ACCCTTGGTCCGGGCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAC
194 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * ** * * * *
18873469 GAGCGGGCAGACGGGTGGGCACTACGCCAGCCAGAGAGACGGGATACGCAAGTCGTGCATCGATA
259 GAGCGAGCGGGCGGGCGGGCACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
18873534 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT-TGCCAATGCCATTTTTATGGCTTG
324 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ATGTGCCAATGCCATTTTTATGGCTTG
* *
18873598 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACCCGTTTTCTA
388 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** *
18873663 TTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTCTCGGAAGGAGTTTT
453 TTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * *
18873728 ATG-CCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
518 -GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
18873792 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAAT
582 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAAT
* *
18873857 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTGGAGGTTT
646 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
18873922 GATGAGGGATAGGGGCCCAATATACGGGCCTAGTACCAGCACCCATCGCACATCATGTGCACACA
711 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * * *
18873987 -CCCCTCGG-CCCCTCGGTCGCCGGAACCCCAATGCCACCGATCAGGTTCTCC-A-----GCAAT
776 CCCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGTCGGCGAT
* * * * *
18874044 GGTGGCCCGATGAAGAAAAATGCGACACAAGCACATGCCCGAGCCCAGCAAG
841 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* ** * *
18874096 TGCTGTCAAAACCCTC-GATCCGGTCCGATATTAGACTGGGAATGAACTCCAG-ATGCTTAGACT
1 TGCTGCCGTAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCC-GTATGCTTAGACT
* * * * * *
18874159 GGGAATGAACTCCGTATGCCTATGTCAACCCACGAAATGAGTGTGCGGGCACTTAGCCGGCCAGA
64 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGA
** ** * *
18874224 GGGGCCAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACTAATCCTACTACCA
129 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT--CCCTCTACGTGCTACCGATCCTGCTACCG
* * * *
18874289 CAACCCTCGATCCGGTCTGATCTTAGACGGGGAATGAACTCCGTATGCGTAAGCCAACCAACGAA
192 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18874354 ACGAG-GAAGCGAGCGGGCGGGCACTATGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCG
257 ACGAGCG-AGCGGGCGGGCGGGCACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCG
* * *** *
18874418 ATATGGTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTGCATGCCAATCCCATTTTTATGGCT
321 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
* *
18874483 TGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC-CTGTTTT
386 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTT
** ** *
18874547 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTGGGGATTTTTTAAAATTTTTTCACAAGGATT
450 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGT
*
18874612 TTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTTGGCATGCACAAAAAAATTCAGC
515 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG-TTGGCATGCACAAAAAAATTCAGC
* *
18874677 TACAAACTCGAAGTGTACAATA-TTTGTGGACCATTTGAAAAAAGTGTCCC-TATTCTAGACACT
579 TAAAAACTCGAAGTGTACAAGATTTTGT-GACCATTTGAAAAAAGTGTCCCAT-TTC-AGACACT
18874740 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
641 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
18874805 GGTTTGATGAGGGATATGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
706 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
18874870 GCACACACCCCCTTCGGCCCCCCCGATCGTC-AGAACCCCAATGCCGCCGGTTAGGTTCTCCGAT
771 GCACAC-CCCCC--CGGCCCCCCCGATCGCCGA-AACCCCAATGCCGCCGGTCAGGTTCTCC---
* * * * * * *
18874934 GATGCTCCGACAATGGTGCCGCGGCGAAAAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCAT
829 GATG-T-CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
18874999 G
892 G
** *
18875000 TGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGG
1 TGCTGCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
18875065 GAATGAACTACGTATGCCTAAGTCAACCCAGGAAACCAGCGTGCGGGCGCTCTGCCAGGCAAAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGG
* ** * * * ** *
18875130 GGCGGGATGCGCAAGCCGGGGATCGGTTAGGTCCCCTTTTACGTGCTACTGATCGTATTACCGTA
131 GGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCC-TCTACGTGCTACCGATCCTGCTACCGCA
* * * * *
18875195 ACCGTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
194 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
18875260 GATTGTGCGAGCGGGCGAGCGGGCACTACGCCGGCCAGAA-AGACGGGATGCGCAAGCCGTGGAT
259 GA----GCGAGCGGGCGGGCGGGCACTACGCTGGCCA-AAGAGACGGGATGCGCAAGCCGTGGAT
**
18875324 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
319 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGG
*
18875389 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTT
384 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * ** * *
18875454 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGTAG
449 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
18875519 TTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTGGTGGCATGC-CAAAAAAAATTCAG
514 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAG
*
18875583 CTAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTT
578 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC-CATTTCAGACACTT
* * *
18875648 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTCTGAGTTCTTGAG
642 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
18875713 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGTACATCATGTGCG
707 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
18875778 CACACCCCCCACGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG-T-T-C--T-TCG
772 CACACCCCCC-CGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGTCG
*
18875837 GCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
836 GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
18875894 TGCTGTCGTAACCATCGGTGC-GGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
1 TGCTGCCGTAACCCTCAGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * **
18875958 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-CTGTGTGGGTGCTCCCCCAGCCAGA
65 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCGCTCAGCCAGCCAGA
* ** * * * **
18876022 AGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTTTGCGTGTTTTCGATCCTGCTACCG
129 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT--CCCTCTACGTGCTACCGATCCTGCTACCG
* * ** *
18876087 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAATTCAACCGACAAA
192 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
18876152 ACGAGC-AGTCGGGCTGGCGGGCGGGCACTAC-ATCGGCCAGAGAGATGGGATGCGCATGCCATG
257 ACGAGCGAG-C--G--GGCGGGCGGGCACTACGCT-GGCCAAAGAGACGGGATGCGCAAGCCGTG
*
18876215 GATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCA
316 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
18876253 GCCCCTCGAC
Statistics
Matches: 4217, Mismatches: 498, Indels: 224
0.85 0.10 0.05
Matches are distributed among these distances:
869 1 0.00
870 535 0.13
871 151 0.04
873 81 0.02
874 1 0.00
875 3 0.00
876 2 0.00
877 3 0.00
878 2 0.00
879 1 0.00
881 1 0.00
882 2 0.00
883 3 0.00
884 2 0.00
886 3 0.00
887 354 0.08
888 196 0.05
889 4 0.00
890 174 0.04
892 4 0.00
893 37 0.01
894 341 0.08
895 7 0.00
896 1 0.00
897 2 0.00
898 2 0.00
899 4 0.00
900 545 0.13
901 46 0.01
902 124 0.03
903 12 0.00
904 263 0.06
905 40 0.01
906 12 0.00
907 582 0.14
908 320 0.08
909 27 0.01
910 328 0.08
911 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
TGCTGCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGG
GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTACGTGCTACCGATCCTGCTACCGCAAC
CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
GCGAGCGGGCGGGCGGGCACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGTCGGCGATGGTGC
CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
Found at i:18875058 original size:26 final size:26
Alignment explanation
Indices: 18875029--18875078 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18875019 CTGGTCCGAT
*
18875029 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTACGTACG
18875055 CTTAGACTGGGAATGAACTACGTA
1 CTTAGACTGGGAATGAACTACGTA
18875079 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTACG
Found at i:18875961 original size:26 final size:26
Alignment explanation
Indices: 18875923--18875975 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18875913 GCGGTCCAAT
18875923 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18875949 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18875975 C
1 C
18875976 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18876792 original size:26 final size:26
Alignment explanation
Indices: 18876763--18876815 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18876753 CCAGTCAAAT
18876763 CTTAGA-TAGGCAATGAACTCCATATG
1 CTTAGACT-GGCAATGAACTCCATATG
* *
18876789 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
18876815 C
1 C
18876816 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:18877666 original size:26 final size:26
Alignment explanation
Indices: 18877630--18877682 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18877620 CCGATCCGAT
18877630 CTTACACTGGGAATGAACT-TCGTATG
1 CTTACACTGGGAATGAACTCT-GTATG
*
18877656 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
18877682 C
1 C
18877683 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:18879006 original size:865 final size:864
Alignment explanation
Indices: 18876786--18880307 Score: 4198
Period size: 903 Copynumber: 4.0 Consensus size: 864
18876776 TGAACTCCAT
* * * * * * *
18876786 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACAAGCGTGCAGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAACTCAACCTACGAAACGAGCGTGCGGGTGCTC
* * * * * * * * ** *
18876851 AGCCGACTAGAAGGGCAGGATGCGCAAGCCAGGGATCGACCAGGTCCGCCTCTGTGTGCTGCTGA
66 AGTCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGA
** * ** * * * * * **
18876916 TCCTGCTATTGTAACCCTTGGTCCGATCCAATCTTAGAATAGGAATGAACTCCGTAAACCTAAGC
131 TCCTGCTGCTGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * *
18876981 CAACCGATAAAACAAGCGGGTGGGTGGGCGGGCGGGCACTACACCGGCCAGAGAGACAGGATGCG
196 CAACCG--ACGA-AA-C--------GAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCG
* * *
18877046 CAAGCCGTGGATCGATAGGGTGGTA-GTGGGTTTAGGCGCATCTTCATATTTCTACGTGCCGATT
249 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
* * *
18877110 CCTTTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
314 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
18877175 GATGACTTGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
379 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * *
18877240 TTTCGGAAGG-GTTTT-GTCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCAT
444 TTTCGGAAGGAGTTTTGGT-CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
18877303 AAAAAAATTCAGCTAAAAACACGAAGTGTAAAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCA
508 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
18877368 TTTCAGACACATTAATAGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
573 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
18877433 TGAGTTCTCGAGGTTTTATGAGGGATAGGGGGCCATTATAAAGGCCAAGTACCAGCACCCATCGC
638 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
18877498 ACATCATGTGCGCACACCCCTCGG-GCCCCCGATCATCGGAACCACAATGCCGTCGGTCAGGTTC
703 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCA-CCGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * *
18877562 TCCGGCGATGCTCTGACGATGGTGCCCCAACGAAGAAAAATG-CGGCA-CAAC-CCTCGGTCCGA
767 TCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAA-GACGGCACCAACACAT--GCCCGA
* * * * *** ****
18877624 TCCGATC-T-TAC-ACTGGGAATGAACT-T-C-GT--
829 GCCCAGCATGTGCTA-TCACAACCCTCTGTCCGGTCC
* *
18877653 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCT-CGAAACGAGCGTGCAGGTGCT
1 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAACTCAA-CCTACGAAACGAGCGTGCGGGTGCT
* * * * *
18877717 CAGTCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATTGACCGAGTCCCCCTCTGCGTGCTGTCG
65 CAGTCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCG
* * * * ** *
18877782 ATCCAGCAGCCGCAAACCTCCTTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
130 ATCCTGCTGCTGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
18877847 CCAACCGACGAAATGAGCGGACTGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
195 CCAACCGACGAAACGAGC-G---GGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
18877912 TGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* *
18877977 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACTACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
*
18878042 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGA
386 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
18878107 AGGAGTTTTGG-CTCCAAACATT-GTAGCCATGATCCTTGTATTTTTGTTGGCATGCATAAAAAA
451 AGGAGTTTTGGTC-CCAAAC-TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18878170 ACTCATCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAG
514 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
18878235 ACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
18878300 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACGCATTGCACATCA
644 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
18878365 TGTGCGCACACCCCCCCGGCCCCCCCGATCACCAGAACCCCAATGCCGTCAGTTAGGTTCTCCGA
709 TGTGCGCACA-CCCCCCGGCCCCCCCGATCACC-GAACCCCAATGCCGCCGGTCAGGTTCTCCGA
** * * * * ** *
18878430 CGATGCTCCGGTGACGGTGCCCCGATTAAGAAAAAGATGGCAGCAACACATGCTGGAGCCCAGTA
772 CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAGACGGCACCAACACATGCCCGAGCCCAGCA
*
18878495 TGTGCTATCGCAACCCTCTGTCCGGTCC
837 TGTGCTATCACAACCCTCTGTCCGGTCC
* * *
18878523 GAT-CTTAGACAGGGAATGAACTCTGTATGCCTAATTCAACCTAC-AGAACGAGCGTACGGGTGC
1 -ATGCTTAGACTGGGAATGAACTCTGTATGCCTAACTCAACCTACGA-AACGAGCGTGCGGGTGC
* * *
18878586 TC-GATCGGCTAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACATGCTAC
64 TCAG-TCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGC
* * **
18878650 CGAT-CTGTTGCTGCAACCCTCAGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
128 CGATCCTGCTGCTGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
18878714 ATCCAACTGACGAAACGAGCGGGCGGGCACTACATCGACCAGAGAGATGGGATGCGCAAGCCGTG
193 AGCCAACCGACGAAACGAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
18878779 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* *
18878844 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCA
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * * * * *
18878909 TTTTCTATTTTTCACGATTTTCAAAACCTTTTGCGGTTCGGGATTTTTAAAAATTTTTTTGGATG
388 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
18878974 GATTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTC
453 GAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
18879039 AGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
18879104 TTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAAATGCTCTTTAAGGGGGTGTGAGTTCTC
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTC
* **
18879169 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCCTCACCCATCGCACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * ** * *
18879234 GCGCACACCCCCCGACCGCCGCGATCGTCGAACCCCAATGCCGCCGGTCAGGTTCACC-AGTGAT
712 GCGCACACCCCCCGGCCCCCCCGATCACCGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGAT
* ** * * *
18879298 GCTCTGGTGATGGTGCCCCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTG
776 GCTCCGACGATGGTGCCCCGATGAAGAAAAAGACGGCACCAACACATGCCCGAGCCCAGCATGTG
*
18879363 CTGTCACAACCCTCGGTCCGGTCCAAACTTAGGCTGGCAATGAACTCC
841 CTATCACAACCCTC--T---GT-----C-----C--G----G---TCC
** * * * * *
18879411 ATATGCTTAGACTGGGAATGAACTCCATATGCCTAACTCAACCCACGAAATGAGCATGCGGGCGT
1 --ATGCTTAGACTGGGAATGAACTCTGTATGCCTAACTCAACCTACGAAACGAGCGTGCGGGTGC
* * * * * * * *
18879476 TCAGCCGGCCAGAGGGGTGGGACGTGCAAGTCGGGGATCGGTCGGGTCCACCTCTACGTGCTGCC
64 TCAGTCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCC
* * * *
18879541 GATCCTGCTACTGAAACCCTCAGTTCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAA
129 GATCCTGCTGCTGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
18879606 GCCAACCGACGAAACGAGCGGGCGGGCAGGC-AGGCGGGCACTATGCTGGCCAGAGAGATGAGAT
194 GCCAACCGACGAAACGAGCGGGCGGGCA--CTA------CAC----C-GGCCAGAGAGACGGGAT
* *
18879670 GCGCAAGCCGTGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TGCC
246 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCC
18879734 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
310 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * ** *
18879799 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCAGTTCAAGATATTTTAAA
375 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * *
18879864 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGAATG
440 ATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
*
18879929 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCC
505 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
18879994 CCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
570 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
18880059 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCAT
635 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
18880124 CGCACATCGTGTGCACACACCCCCCGGCCCCCCTGATCGCCGAAACCCCAATGTCGCCGGTCAGG
700 CGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCG-AACCCCAATGCCGCCGGTCAGG
* * * * *
18880189 TTCTCCGACGATGCTCCGACGATAGTGCCCCGGTGAAGAAAAATACGGCACCAGCACCTGCCCGA
764 TTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAGACGGCACCAACACATGCCCGA
** * *
18880254 GCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCC
829 GCCCAGCATGTGCTATCACAACCCTCTGTCCGGTCC
*
18880290 AAT-CTTAGACTGGCAATG
1 -ATGCTTAGACTGGGAATG
18880308 CACTTCGTAT
Statistics
Matches: 2294, Mismatches: 284, Indels: 144
0.84 0.10 0.05
Matches are distributed among these distances:
855 3 0.00
856 1 0.00
859 56 0.02
860 166 0.07
861 237 0.10
862 12 0.01
863 76 0.03
864 103 0.04
865 396 0.17
866 99 0.04
867 164 0.07
868 5 0.00
869 73 0.03
870 108 0.05
871 2 0.00
874 1 0.00
877 14 0.01
878 2 0.00
879 4 0.00
881 1 0.00
882 1 0.00
885 1 0.00
886 1 0.00
888 3 0.00
889 2 0.00
890 103 0.04
891 81 0.04
892 1 0.00
893 2 0.00
898 4 0.00
902 113 0.05
903 458 0.20
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
ATGCTTAGACTGGGAATGAACTCTGTATGCCTAACTCAACCTACGAAACGAGCGTGCGGGTGCTC
AGTCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGA
TCCTGCTGCTGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCCGATCACCGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
GACGATGGTGCCCCGATGAAGAAAAAGACGGCACCAACACATGCCCGAGCCCAGCATGTGCTATC
ACAACCCTCTGTCCGGTCC
Found at i:18879419 original size:26 final size:26
Alignment explanation
Indices: 18879390--18879442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18879380 CCGGTCCAAA
*
18879390 CTTAGGCTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
*
18879416 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
18879442 C
1 C
18879443 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:18879868 original size:26 final size:26
Alignment explanation
Indices: 18879822--18879871 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
18879812 TTTTCTATTT
* *
18879822 TTCATGATTTTTGAAACTTTTTTCAG
1 TTCAAGATTTTTGAAAATTTTTTCAG
18879848 TTCAAGATATTTT-AAAATTTTTTC
1 TTCAAGAT-TTTTGAAAATTTTTTC
18879872 GGAAGGAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.28, C:0.10, G:0.08, T:0.54
Consensus pattern (26 bp):
TTCAAGATTTTTGAAAATTTTTTCAG
Found at i:18884013 original size:893 final size:891
Alignment explanation
Indices: 18880319--18889201 Score: 10436
Period size: 877 Copynumber: 10.1 Consensus size: 891
18880309 ACTTCGTATG
* * * * * ** * *
18880319 CTTAGACTGGAAATGAACTCC-TACGCCTAAGCCAACCGATGAAATGAGTGGGCGGGCGGGCAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAG-CAG-GGGCGGGCGGG
* * * *
18880383 CGGGCACTACGCCGCCCAAAGAGACGGGATGCGCAAGTCGTGGATCAATAGGGTGGTAGGTGGGT
64 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * *
18880448 TTAGGCACATCTTCATATTTCTGCATGCCAATTCC-TTTTTGATGGCATGTAAATTCAAACAATG
129 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT-ATGGCTTGTAAATTCATACAATG
18880512 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTT
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTT
* *
18880576 TGAAGCTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAATGG-GTTTTGGCCCCAAACTTG
257 TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTG
* *
18880640 GTAGACGTGATCCTTGTATTTTTGTTGGCATTCATAAAAAAACTCAGCTAAAAACTCGAAGTGTA
321 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT-AAAAAATTCAGCTAAAAACTCGAAGTGTA
*
18880705 CAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
385 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
18880770 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
450 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
18880835 GGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCTTGTGCGCACACCCCCTCTGG-GCC
515 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-C-GGCCCC
*
18880899 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
578 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-TC-A---T--GACGATGGTGCCCC
* ** ** * *
18880964 GATGAAGAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTGCTACCGTAA-CC-C--T-C
635 GACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* *
18881024 GGT-C---C----A----G--T----T-CG-AT-CTTAGACTGGGAATGAACTCTGTATGCTTAA
700 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* ** * * * * *
18881068 GTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTAGGCCAAAGGGGTGGGCTGCACAAGCCGGGG
765 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGG
* * * * * * * *
18881133 ATCGATCGTGTCCCCCTCTGCGTGCTGTCAATCCTGCTGCTGCAGCCCTCGGT-TCGATCCAAT
830 ATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-G-GCCTAT
* *
18881196 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC-AG-GGGCGGGCGGG
* * *
18881261 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCATGCCGTGGATCGATAAGGTGGTAGGTGGGT
64 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
18881326 TTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGG
129 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
18881391 TCCCTTAAGCCTTCACGTGATGTTT-ATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTG
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTG
* *
18881455 AAACTTTTTACGGTTCGAGATTTTTTAAAACTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
259 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * ** *
18881520 GACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATACAATTAAAAACTTGAAGTGTACAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
18881585 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * * **
18881650 CTGTAAAATCTAAAATGCTCTTCAAGAGGGTGTGAGCTCTTGATTTTTGATGAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
18881715 CAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGCACACCCGCCCCAGCCCCCCC
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCC
* * * * * ** *
18881780 GAT-TTCTTGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTTCCGTGG
581 GATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCT----C--T-C-ATGACGATGGTGCCCCGA
* * * *
18881844 CGAAGAAAAATGTGGCACCAGCACAAGCCCAAGCCAAGCATGTGCTGCCGTAACCCT---T----
637 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
*
18881902 T--G----T---CT--G---G---TCC-AAT-CTTAGAACTGGGAATGAACTCCGTATGCCTAAG
702 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG-ACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
18881948 TTAGCCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
766 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
* * * ** * * * *
18882013 TC-AGTCAGGTCCCCCTCTACGTGCTATCGATCATGCTACCACAACCCTCAGGTC-GGTCTAAT
831 TCGA-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC-GGTCTGGCCT-AT
* * * * ** ** *
18882075 CTTATACTGGGCATAAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCA--AACAGGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGGGCGGGCGGGCG
* *
18882138 GGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGTTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18882203 AGGCACATCTTCATATTTCTGCGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTA
131 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
18882268 ACTTAAGCCTTCATGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACAATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAA
* * * *
18882333 ACTTTTTGTGGTTCCAGAATTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
261 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
18882398 CATGATGCTTGTATTTTTGTTGGCATCCATAAAAAATTCACCTAAAAACTCAAAGTGTACAAGAT
326 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
18882463 TTTGTGACCATTTGATAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAACCTA
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
18882528 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGATTAGATGAGGGATA-GGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
18882592 TATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACGCACCCCCCGG-CCCCCCGAT
521 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA--CACCCCCCGGCCCCCCCGAT
* *
18882656 CGCCAGAACCCCAATGCCG-C---C-GG--------T--C-A-GGTGCCCCGACGAAGAAAAATG
584 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTCATGACGATGGTGCCCCGACGAAGAAAAATG
* * * *
18882704 TGGCACCAGCACATGCCCAAGCACAGCATGTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGA
649 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * * * *
18882769 TTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAAATCTGTATGCCTAAGTCAACCCATGAAA
714 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
18882834 TGAGCTTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCC
779 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCC
* ** * * * * * *
18882899 CATCTGTATGCTGCC-ATTCTTGCTACCGTAATCCTTC-ATCTGGTCCAAT
844 CCTCTGCGTGCTGCCGA-TCCTGCTGCCGCAA-CCCTCGGTCTGG-CCTAT
* * * *
18882948 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGAGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC-AG-GGGCGGGCGGG
* * * * * *
18883013 CGGGCACTACGCCGACTAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAAGTGCGT
64 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
18883078 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
18883143 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAACTATTTTTA
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTG
* * * *
18883208 AAACTTTTTACGGTTCCAGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTTGTA
259 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
18883273 GACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAATTCAGGTAAAAACTCGAAGTGTACAAT
324 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
18883338 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
389 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
18883403 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCAAGGTTTGATGAGGGAAAGGGGGCC
454 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
18883468 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGGGCGCACACCCCCCTCGGCCCCCCCG
519 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCG
** * ** *
18883533 ATCACCGGAACCCCAATGTCATCGGTCAGGTT-T-TCA-GACGATGGTGCCCCGGCGAAGAAAAA
582 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTCATGACGATGGTGCCCCGACGAAGAAAAA
* * * **
18883595 TATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCAGTCTAATCTTA
647 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* ** ** *
18883660 GACTGGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTTTGTATAACTAAGTCAACCCATGA
712 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* *
18883725 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGTATGCGCAAGCCGGGGATCGACCGGGTC
777 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTC
* * * *
18883790 CACCTTTGCGTGCTGTCGATCCTGCTGCCCCAACCCTCGGTCTGGACCTAT
842 CCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGG-CCTAT
* * *
18883841 CTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGTGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGG-GG-CGGGCGGG
* * *
18883906 CGTGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGT
64 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18883971 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
18884036 TCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TAATTTTT
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTT
** *
18884100 GGCACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
258 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
18884165 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAGAACTCGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* ** * * *
18884230 AAATTTTGTGAGGATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATTGCTACTGGCAGCCAA
387 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18884295 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
452 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
18884360 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACGCACACCCCCCCGACCCCCTC
517 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC-C
* * * *
18884425 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGCTAGTGCCCCGG
580 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-TC-A---T--GACGATGGTGCCCCGA
* ** * *
18884490 TGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGG
637 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * **
18884555 TCCGATCTTAGACTGGGAATGAACTCTGTATGTTTAGACTGTTAATGAACTCCGTATGCCTAAGT
702 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
18884620 CAACCCACGAAACGAACGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGAT
767 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGAT
** * * * ** * *
18884685 CGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACTGCAACCCTCTATCCGGTCTGAT
832 CGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGCCT-AT
18884746 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCA--GGCGGGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGGGCGGGCGGGCG
*
18884809 GGGACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
18884874 AGGCACATCTACATATTTTTACATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
18884939 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAA
* * * * *
18885004 ACTTTTTGCGGTTCGGGATTTTTCAAAATTCTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGA
261 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
18885069 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
326 CGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
18885134 TTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAAT-GCTACTGGCAGTAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
18885198 GTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
18885263 ATATAAGGGCCAAGTACCAACACCCATCGCACATCATCTGCGCACACACCCCCCGGCCCCCCCGA
520 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCGGCCCCCCCGA
* * * *
18885328 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCATTGCTCCTATGATGGTGCCCCAACGA
583 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-TCA-TG-----ACGATGGTGCCCCGACGA
* * * *
18885393 AGAAAAATATGGTACCAGCACATGCCCAAGCACAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
640 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
18885458 GA---T---CT-----T-AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
705 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * ** *
18885511 TCCATGAAACAAGCGTGCGAGCGCTCAGCCGACCAGAGGGGTAGGATACGCAAGCCAGGGATC-A
770 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGA
* * * *** * *
18885575 GCCAGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTTATTTTGGTCTGAT
835 -CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGCCT-AT
* * * *
18885634 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCAA-TGACAAAATGAACGGGCAGGCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACTGACGAAACGAGCAGG--GGCGGGCGG
** * * * * *
18885698 GCAAGCACTACACCGGTCATAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCG
63 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
18885763 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
128 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
18885828 GTCCCTCAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTC
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTT
* * * * *
18885893 AAAACTTTTTACGGTTCGTGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTTGT
258 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
18885958 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGGTAAAAACTCAAAGCGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAA-AATTCAGCTAAAAACTCGAAGTGTACA
* * *
18886023 ATATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAA
387 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18886088 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGG
452 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
18886153 CCAATATAAGGGCCAAGTACCGGCACCCATTGCATATCATGTGTGCACACCCCCCGGCCCCCCCG
517 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * * * *
18886218 ATCGTCGGAATCCCAATGTCG-TGGATCAGGTTCTCCGACGATGCTCCGACGATGGTACCTCGGC
582 ATCGTCGGAACCCCAATGCCGCCGG-TCAGGTTCT-C-TC-A---T--GACGATGGTGCCCCGAC
* ** * * **
18886282 GAAGAAAAATGCGGTGCCAGCAAATGCCCCAGCCCAGCATGTGCTGCCGCAACCCTCGGTTTGGT
638 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * *
18886347 CTGATCATAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
703 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
18886412 AACCCACGGAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATT
768 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA-T
* * * ** ** * * *
18886477 C-ACCAGGTCCCCCTCTGCGTGCTGCCAACCCCACTATCGTAACCCTTGGTCTGGTCCGAT
832 CGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGG-CCTAT
**
18886537 CTTAGACTGGGAATGAACTCTATATGCCTAAGCCAA-TCGACGAAAC--G-A-------GCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCAGGGGCGGGCGGGC
* * *
18886591 GGGCACTATGCCGGCCAGAGAGACGGGATG-GACAAGCCATGGATCGATAGGGTGGTTGGTGGGT
65 GGGCACTACGCCGGCCAGAGAGACGGGATGCG-CAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
18886655 TTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18886720 TCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTG
* *
18886785 AAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTA
259 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
18886850 GACGTGATCCTTGTATTTTTCTTGGCATTCACAAAAAAATTCAGCTAAAAACTCAAAGTGTTCAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
18886915 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
18886980 CTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
18887045 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----C--CCCCCCTGA
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * *
18887103 TCGTCGGAACCCCAATTCCACCGGTCAGGTTCCCTGACGATGCACTGACGATGGTGCCCTGGCGA
583 TCGTCGGAACCCCAATGCCGCCGGTCAGGTT--CT--C--T-CA-TGACGATGGTGCCCCGACGA
** * * *
18887168 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAAACCTCGGTCCGGTCC
640 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
18887233 GA---T---CT-----T--A----G-A----T----TGGGAATGAACTCCGTATGCCTAAGTCAA
705 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* **
18887272 CCCACGAAA-GAAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCAGGGATCG
770 CCCACGAAACG-AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCG
* ** * * *
18887336 GCCGACTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTTTGGTCCAAT
834 ACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGG-CCTAT
* * * *
18887395 CTTAAACTTGGAATGATCTCCGTATGCCTAAACCAACTGACGAAAC--G-A-------GCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGGGCGGGCGGGCG
* * * *
18887450 GGCACTACGCTGGCCAAAGAGACGAGATGCGGAAG-C---G---G-T-GGGT--T---T--G---
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
18887496 -GGCACATATTCATATTTTTAGGTGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGTC
131 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
18887560 CCTTAAGCCTTCACGTGAAGTTTCATGGCTAGATGACTCGTTTCCTAATTTTT-A-TGATTTTTT
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCACT-ATTTTTG
* * * *
18887623 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGG-CCCAAACATGGTA
259 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
18887687 GACGTGATCTTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAACTGTACAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCAT-AAAAAATTCAGCTAAAAACTCGAAGTGTACAA
18887752 GATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
388 GA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
18887817 CCTGTAAAATGTCAAATACTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGGGGG
452 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
**
18887882 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTTG
517 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * *
18887947 ATCATTGGAACCCCAATGCCACCGGTCAGGTTTTCTGGCGATGCTCAGGCGATGGTGCCCCGACG
582 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCT--C-ATG---A--CGATGGTGCCCCGACG
* * * ** *
18888012 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGGTGCCGTAACCCTTTGTCCGATC
639 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * * * *
18888077 CGATCTTAGACTCGAAATGAACTTCGTATGCTTAGACTGAGAATGAACTCCATATGCCTAACTCA
704 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
18888142 ACCCACGAAACGATCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGACGCGCAAGTC-GAGGATC
769 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATC
* * * * * * ** *
18888206 GGCCGAGTACCCCTCCGCATGCTGCCGATCTTGCTGCCATAACCCTCGGTCTGGTCTGAT
833 GACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGCCT-AT
* *
18888266 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACAAGCAGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCA-G-GGGCGGGCGGG
** * * *
18888331 CGGGCACTACGCTAGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGAT-GGAATGGTAAGTGGG
64 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG-GTGGTAGGTGGG
*
18888395 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATCGCTTGTAAATTCATACAATG
128 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
18888460 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTT
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTT
* * * * * * *
18888524 TAAAACTTTTTGTGATTCGGGATTTTTCAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGG
257 TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
18888589 TAGACGTGATCCTTCTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
322 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAT-AAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
18888654 AA-ATTTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCA
386 AAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
18888718 AACCTGTAAAATCTCAAATACTCTATAA-GGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAAGG
450 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
18888782 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCC
515 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * * *
18888846 CGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGACGGTGGTGCCTCGA
580 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--TCA---T--GACGATGGTGCCCCGA
* *
18888911 CGAAGAAAAATGTGGCACCAGCACATG-CCTAGCCCAGCATGTGCTGCCACAA-CC-C--T-C-G
637 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
18888969 ---G----T---CT--G---G---TCCG-AT-CTTAGACTAGGAATGAACTTCGTATGCCTAAGT
702 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
18889014 CAACCCACAAAACGAGCGTGCGGGCACTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCAGGGAT
767 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGAT
* * * * * * *
18889079 CGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCAGTCCGAT
832 CGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-CTGGCCTAT
18889140 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-TCGACGAAACGAGC--GGGCGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCAGGGGCGGGCGGGC
18889202 ACATCATGTT
Statistics
Matches: 6944, Mismatches: 815, Indels: 501
0.84 0.10 0.06
Matches are distributed among these distances:
837 70 0.01
838 323 0.05
839 7 0.00
840 4 0.00
841 2 0.00
842 1 0.00
843 3 0.00
844 1 0.00
845 107 0.02
847 1 0.00
848 60 0.01
849 5 0.00
850 2 0.00
851 4 0.00
852 1 0.00
854 1 0.00
855 1 0.00
856 1 0.00
857 5 0.00
858 203 0.03
859 2 0.00
861 1 0.00
862 2 0.00
863 1 0.00
864 1 0.00
866 2 0.00
867 2 0.00
868 2 0.00
869 2 0.00
870 14 0.00
871 169 0.02
872 8 0.00
873 185 0.03
874 239 0.03
875 295 0.04
876 135 0.02
877 760 0.11
878 325 0.05
879 197 0.03
880 5 0.00
881 2 0.00
883 39 0.01
884 108 0.02
885 2 0.00
886 5 0.00
887 3 0.00
888 186 0.03
889 6 0.00
890 4 0.00
891 595 0.09
892 357 0.05
893 666 0.10
894 239 0.03
895 3 0.00
896 2 0.00
897 5 0.00
898 1 0.00
899 5 0.00
900 248 0.04
901 437 0.06
902 111 0.02
903 413 0.06
904 80 0.01
905 277 0.04
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGGGCGGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAA
ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
TCGGAACCCCAATGCCGCCGGTCAGGTTCTCTCATGACGATGGTGCCCCGACGAAGAAAAATGTG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCC
TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGCCTAT
Found at i:18884591 original size:26 final size:26
Alignment explanation
Indices: 18884562--18884612 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18884552 TGGTCCGATC
*
18884562 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
**
18884588 TTAGACTGTTAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
18884613 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:18886736 original size:891 final size:887
Alignment explanation
Indices: 18882682--18889203 Score: 8063
Period size: 893 Copynumber: 7.4 Consensus size: 887
18882672 CCGCCGGTCA
* *
18882682 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCACAGCATGTGCTGCCGCAACC
1 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * *
18882747 CTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAAATCTGT
66 CTC-GTCTGGTCCGATC-T--ACT--GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
18882812 ATGCCTAAGTCAACCCATGAAATGAGCTTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCA
125 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* ** * * * * *
18882877 AGCCAGGGATCGACCGGGTCCCCATCTGTATGCTGCC-ATTCTTGCTACCGTAATCCTTC-ATCT
190 AGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGA-TCCTGCTGCCGCAA-CCCTCGGTCT
*
18882940 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGGG
253 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG-AA--A-C-GGC---
* * * * *
18883005 AGGGTGGGCGGGCACTACGCCGACTAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGT
310 A-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
18883070 AAGTGCGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
374 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18883135 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAAC
439 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
18883200 TATTTTTAAAACTTTTTACGGTTCCAGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAA
504 TATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
18883265 ACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-TAAAAAATTCAGGTAAAAACTCGAA
569 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18883329 GTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
634 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18883394 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCAAGGTTTGATGAGGGA
699 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
18883459 AAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGGGCGCACACCCCCCTCG
764 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CG
** ** *
18883524 GCCCCCCCGATCACCGGAACCCCAATGTCATCGGTCAGG-T-T-------T--TCAGACGAT
827 GCCCCCCCGATCGTCGGAACCCCAATG-CCGCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* *
18883575 GGTGCCCCGGCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
1 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* ** ** * **
18883640 CTTGGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTTTGT
66 C-TCGTCTGGTCCGATC-T--ACT--GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
** * *
18883705 ATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGTATGCGCA
125 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * *
18883770 AGCCGGGGATCGACCGGGTCCACCTTTGCGTGCTGTCGATCCTGCTGCCCCAACCCTCGGTCTGG
190 AGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGG
* * * * *
18883835 ACCTATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGTGGACG
255 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACG-GCA---GG-CG
* *
18883900 GGCGGGCGTGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAG
315 GGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
**
18883965 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
376 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
18884030 CAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TA
441 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-
** *
18884094 ATTTTTGGCACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
505 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
18884159 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAGAACTCGAAG
570 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* ** * *
18884224 TGTACAAAATTTTGTGAGGATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATTGCTACTGGC
635 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
18884289 AGCCAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
700 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
18884354 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACGCACACCCCCCCGAC
765 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
*
18884419 CCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGCT
829 CCCC-CCGATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGAT
* ** ** *
18884480 AGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
1 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * **
18884545 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGTTTAGACTGTTAATGAACTCCGT
66 CTC-GTCTGGTCCGATC-T--ACT--GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
18884610 ATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCA
125 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
** * * * ** *
18884675 AGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACTGCAACCCTCTATCCGG
190 AGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGG
*
18884740 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGCGGGCG
255 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACG-GCAGGCGGGCG
18884805 GGCGGGGACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
319 GGC----ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
18884870 GTTTAGGCACATCTACATATTTTTACATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAAT
380 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
18884935 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTT
445 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTT
* * * * *
18885000 TGAAACTTTTTGCGGTTCGGGATTTTTCAAAATTCTTTCGAAAGGATTTTTGGCCCCAAACTTGG
510 TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
18885065 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
575 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
18885130 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAAT-GCTACTGGCAGTAA
640 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
18885194 ACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
705 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
18885259 GCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATCTGCGCACACACCCCCCGGCCCCC
770 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCGGCCCCC
* * *
18885324 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC-ATTGCTCCTATGAT
833 CCGATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGA-TGCTCCGACGAT
* * * * *
18885380 GGTGCCCCAACGAAGAAAAATATGGTACCAGCACATGCCCAAGCACAGCATGTGCTGCCGCAACC
1 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
18885445 CTCGGTCCGGTCCGA--T-CT---T-AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
66 CTC-GTCTGGTCCGATCTACTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * ** *
18885503 TAAGTCAATCCATGAAACAAGCGTGCGAGCGCTCAGCCGACCAGAGGGGTAGGATACGCAAGCCA
130 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCA
* * * *** * *
18885568 GGGATC-AGCCAGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTTATTTTGGTCTG
195 GGGATCGA-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCG
*
18885632 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCAA-TGACAAAATGAACGGGCAGGCGGGC
259 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACTGAC--GA--AAC-GGCAGGCGGGC
* * * *
18885696 GGGCAAGCACTACACCGGTCATAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
318 -GG---GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* **
18885761 CGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
379 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
18885826 TGGTCCCTCAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACTATTT
444 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTT
** * * * *
18885891 TCAAAACTTTTTACGGTTCGTGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTT
509 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
18885956 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGGTAAAAACTCAAAGCGTA
574 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
18886021 CAATATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCA
639 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
18886086 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGG
704 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
18886151 GGCCAATATAAGGGCCAAGTACCGGCACCCATTGCATATCATGTGTGCACACCCCCCGGCCCCCC
769 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * *
18886216 CGATCGTCGGAATCCCAATGTCGTGGATCAGGTTCTCCGACGATGCTCCGACGAT
834 CGATCGTCGGAACCCCAATGCCGCGG-TCAGGTTCTCCGACGATGCTCCGACGAT
* * * * ** * *
18886271 GGTACCTCGGCGAAGAAAAATGCGGTGCCAGCAAATGCCCCAGCCCAGCATGTGCTGCCGCAACC
1 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * *
18886336 CTCGGTTTGGTCTGATCATAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGT
66 CTC-GTCTGGTCCGATC-T--ACT--GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* *
18886401 ATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCA
125 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * ** ** * *
18886466 AGTCGGGGATTC-ACCAGGTCCCCCTCTGCGTGCTGCCAACCCCACTATCGTAACCCTTGGTCTG
190 AGCCAGGGA-TCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
**
18886530 GTCCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAA-TCGACGAAAC-G-A-GCGGGC
254 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGGCAGGCGGGC
* * *
18886591 GGGCACTATGCCGGCCAGAGAGACGGGATG-GACAAGCCATGGATCGATAGGGTGGTTGGTGGGT
318 GGGCACTACGCCGGCCAGAGAGACGGGATGCG-CAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
18886655 TTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
382 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18886720 TCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
447 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTG
* *
18886785 AAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTA
512 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
18886850 GACGTGATCCTTGTATTTTTCTTGGCATTCACAAAAAAATTCAGCTAAAAACTCAAAGTGTTCAA
577 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
18886915 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
642 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
18886980 CTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGGC
707 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
18887045 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----C--CCCCCCTGA
772 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * *
18887103 TCGTCGGAACCCCAATTCCACCGGTCAGGTTC-CCTGACGATGCACTGACGAT
837 TCGTCGGAACCCCAATGCC-GCGGTCAGGTTCTCC-GACGATGCTCCGACGAT
* * ** * * *
18887155 GGTGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAA-A
1 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
18887219 C-C-TC--G---G-TC--C-G---G---TCCG-AT-CTTAGATTGGGAATGAACTCCGTATGCCT
66 CTCGTCTGGTCCGATCTACTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* **
18887265 AAGTCAACCCACGAAA-GAAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCA
131 AAGTCAACCCACGAAACG-AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCA
* ** * * *
18887329 GGGATCGGCCGACTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTTTGGTCCAA
195 GGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGA
* * * *
18887394 TCTTAAACTTGGAATGATCTCCGTATGCCTAAACCAACTGACGAAAC-G-A-GCGGGCGGGCACT
260 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGGCAGGCGGGCGGGCACT
* * * *
18887456 ACGCTGGCCAAAGAGACGAGATGCGGAAG-C---G---G-T-GGGT--T---T--G----GGCAC
325 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * ** *
18887501 ATATTCATATTTTTAGGTGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAA
390 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
18887566 GCCTTCACGTGAAGTTTCATGGCTAGATGACTCGTTTCCTAATTTTT-A-TGATTTTTTAAACTT
455 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCACT-ATTTTTGAAACTT
* * * *
18887629 TTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGG-CCCAAACATGGTAGACGTG
518 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
18887693 ATCTTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAACTGTACAAGATTTT
583 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTT
18887758 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
647 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
18887823 AAATGTCAAATACTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATA
712 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
** * *
18887888 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTTGATCATT
777 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* * * * * *
18887953 GGAACCCCAATGCCACCGGTCAGGTTTTCTGGCGATGCTCAGGCGAT
842 GGAACCCCAATGCC-GCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * *
18888000 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGGTGCCGTAACC
1 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * * *
18888065 CTTTGTCCGATCCGATCTTAGACTCGAAATGAACTTCGTATGCTTAGACTGAGAATGAACTCCAT
66 C-TCGTCTGGTCCGATC-T--ACT-G-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
18888130 ATGCCTAACTCAACCCACGAAACGATCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGACGCGCA
125 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * * **
18888195 AGTC-GAGGATCGGCCGAGTACCCCTCCGCATGCTGCCGATCTTGCTGCCATAACCCTCGGTCTG
190 AGCCAG-GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
* *
18888259 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACAAGCAGGCGGGC
254 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG----AA--A--C-GGC
* ** * *
18888324 GGGCGGGCGGGCACTACGCTAGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGAT-GGAATGGT
310 AGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG-GTGGT
* * *
18888388 AAGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATCGCTTGTAAATTCA
374 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
18888453 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-
439 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * * * *
18888517 TGATTTTTAAAACTTTTTGTGATTCGGGATTTTTCAAAATTTTTTCAGAAGGATTTTTGGCCCCA
504 T-ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
18888582 AACTTGGTAGACGTGATCCTTCTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCGA
568 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
18888647 AGTGTACAA-ATTTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACT
633 AGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
18888711 GGCAGCAAACCTGTAAAATCTCAAATACTCTATAA-GGGGTTTGAGTTCTCGAGGTTTGATGAGG
697 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
18888775 GATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
762 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * ** *
18888840 G-CCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGACGGT
827 GCCCCCCCGATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * *
18888901 GGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATG-CCTAGCCCAGCATGTGCTGCCACAA-C
1 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* *
18888964 C-C-TC--G---G---T-CTG---G---TCCG-AT-CTTAGACTAGGAATGAACTTCGTATGCCT
66 CTCGTCTGGTCCGATCTACTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
18889010 AAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCAG
131 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG
* * * * **
18889075 GGATCGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCAGTCCGAT
196 GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
*
18889140 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-TCGACGAAACGAGCGGGCGGGCGGGCAC
261 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACG-GCAGGCGGGCGGGCAC
18889204 ATCATGTTGG
Statistics
Matches: 4932, Mismatches: 550, Indels: 321
0.85 0.09 0.06
Matches are distributed among these distances:
837 71 0.01
838 323 0.07
839 6 0.00
842 1 0.00
843 1 0.00
844 1 0.00
845 103 0.02
846 2 0.00
847 1 0.00
849 6 0.00
850 1 0.00
851 1 0.00
854 2 0.00
855 2 0.00
857 4 0.00
858 208 0.04
859 3 0.00
860 5 0.00
862 1 0.00
863 1 0.00
865 1 0.00
866 19 0.00
868 1 0.00
869 4 0.00
870 5 0.00
871 172 0.03
872 1 0.00
873 1 0.00
874 173 0.04
875 6 0.00
876 3 0.00
877 1 0.00
878 1 0.00
879 2 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 41 0.01
884 103 0.02
885 2 0.00
886 2 0.00
887 2 0.00
888 182 0.04
889 12 0.00
890 6 0.00
891 595 0.12
892 358 0.07
893 654 0.13
894 238 0.05
895 7 0.00
896 6 0.00
897 7 0.00
898 1 0.00
899 8 0.00
900 254 0.05
901 441 0.09
902 110 0.02
903 413 0.08
904 76 0.02
905 278 0.06
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (887 bp):
GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
CTCGTCTGGTCCGATCTACTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG
GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGGCAGGCGGGCGGGCACTA
CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTT
GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAA
CCCCAATGCCGCGGTCAGGTTCTCCGACGATGCTCCGACGAT
Found at i:18888132 original size:26 final size:26
Alignment explanation
Indices: 18888081--18888133 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18888071 CCGATCCGAT
* *
18888081 CTTAGACTCGAAATGAACTTCGTATG
1 CTTAGACTCGAAATGAACTCCATATG
18888107 CTTAGACT-GAGAATGAACTCCATATG
1 CTTAGACTCGA-AATGAACTCCATATG
18888133 C
1 C
18888134 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTCGAAATGAACTCCATATG
Found at i:18896266 original size:26 final size:26
Alignment explanation
Indices: 18896222--18896274 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18896212 CTGGTCTGAT
*
18896222 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
18896248 CTTAGACTGGAAATTAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
18896274 C
1 C
18896275 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:18897161 original size:26 final size:26
Alignment explanation
Indices: 18897125--18897177 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18897115 CCGGTCTGAT
*
18897125 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18897151 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18897177 C
1 C
18897178 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18898068 original size:26 final size:26
Alignment explanation
Indices: 18898039--18898091 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18898029 CCAATCCGAT
* * *
18898039 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCATATG
18898065 CTTAGACTGGAAATAAACTCCATATG
1 CTTAGACTGGAAATAAACTCCATATG
18898091 C
1 C
18898092 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCATATG
Found at i:18898963 original size:26 final size:26
Alignment explanation
Indices: 18898927--18898977 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18898917 TGATCCGATC
*
18898927 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
18898953 TTAGACTGGGAATGAGCTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
18898978 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:18899992 original size:877 final size:880
Alignment explanation
Indices: 18896184--18900279 Score: 5158
Period size: 912 Copynumber: 4.6 Consensus size: 880
18896174 GTCCGTGACA
* ** * * *
18896184 CCCAGCATGTGCTGCCGCAACCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCCATATG
1 CCCAGCATGTGCTGCCACAACCCTC-ACCCGATTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * *
18896248 CTTAGACTGGAAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCTCTCAGT
64 CTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * ** *
18896313 CGACCATAGGGGCGGGATGCGCAAGCCGAGGATCG-GTGGGTCCCCCTCTGTGTGCTGCCGATCT
128 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * * * * *
18896377 TACTGTCACAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
193 TGCTGCCGCAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18896442 CCGATGAAACAAGCGGGCGAACGGGCGGGCGAGCACTACGTCGGCTAGAGACACGGGATGCGCAA
258 GCGA-G-GA-AA-----CG-A--GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * ***
18896507 GCCTTGGATCGATAGGGTGGTAGGTGGGTATAGGGACATCTTCATATTTCTGCATGCCAATGCCA
312 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
*
18896572 TTTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
377 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18896637 GACTCGTTTTCTATTTTTCACGATTTATGAAACTTTTTGCTGATCT-GG-ATTTTTTAAAATTTT
442 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAG-TTTAGGAATTTTTTAAAA-TTT
*
18896700 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
505 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
18896765 AAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
570 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
18896830 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
635 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18896895 AGTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCAC
700 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** *
18896960 ATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGCCGAAACCTTAATCCCGTCGGTCAGGTTCT
765 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCT
* ** * *
18897025 CCGGTGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCTAG
829 CC--TG--G--C--A--ATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * * *
18897087 CCTAGCATGTGCTGCCCCAACCCTCACTCCG-GTCTGATCTTAGACTGGGAATGAACTTCGTATG
1 CCCAGCATGTGCTGCCACAACCCTCAC-CCGATTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * *
18897151 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCACTCAGC
64 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * **
18897216 TGGCCAGAGGGGCGGGATGTGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGTGTGCTGAAGAAT-
128 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCG-ATC
* * * * * *
18897280 CTACTGCCGTAACCCTC-AGTCCGGTCTGATCTTACACTGGGAATGAACTCCGCATGCCTAAGCC
192 CTGCTGCCGCAACCCTCGA-TTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18897344 AACCGACGAAACGAGCGGGCGGACGGACGGGCAGGCAGGCGGGCACTATGTCGGCCAGAGAGACG
256 -A---A-G---CGA------GGA--AAC--G-AGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
*
18897409 GGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGC
302 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG-
* *
18897472 ATGCCAATTCCATTTTTATGGCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAAGTT
366 -TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
** * *
18897537 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCAGTTCAGG-ATTT
430 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTAGGAATTT
* **
18897601 TTTAAAATTCTTTCAGAAGGATTTTTCTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TT
495 TTTAAAATT-TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
18897665 CGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
559 -GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
18897730 AGTGTCCCCATTTCGGATACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCAT
623 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
** *
18897795 TAAGGGGGTGTGAGTTCTCAACATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAG
688 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
18897860 CACCCATCGCACATCATGTGCGCACACACCCCTCCGG-CCCCCCGAATCGCC-AGAACCCCAATG
753 CACCCATCGCACATCATGTGCG--CACACCCC-CCGGCCCCCCCG-ATCGCCGA-AACCCCAATG
* * *
18897923 CCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTTCCCCGGTGAAGAAAAATACGGCACCA
813 CCGTCGGTCAGGTTCT-C-------CT--GGCAATGGTGCCCCGATGAAGAAAAATACGGCACCA
18897988 GCACATGCCCGAG
868 GCACATGCCCGAG
* * *
18898001 CCCAGCATGTGCTGCCACAACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CCCAGCATGTGCTGCCACAACCCTCA-CCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18898066 TTAGACTGGAAATAAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCAGGCGCTCAGGC
65 TTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA-GC
* * * * *
18898131 GGA-CAGAGGGGCAGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGTGTTGCCGATCC
128 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * *
18898195 TGCTACCACAACCCTCG-GTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
193 TGCTGCCGCAACCCTCGATTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
**
18898259 ACTGACGAAACGAGCAGGCGGACGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
257 A--G-CG--A-G-G-AAAC-GA-GG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * * **
18898324 AGCCATTGATTGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTACATGCCAATGCC
311 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
* *
18898389 TTTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
376 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
18898454 TGACTCG-----T-TTTTTCACGATTTTTGAAACTTTTTGCAGTTCAAGATTTTTTTAAATTTTT
441 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTAGGAATTTTTTAAAATTTT
* *
18898513 TCAGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCA-AAA
506 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18898577 AAATATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATT
571 AAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
18898642 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
635 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
**
18898707 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
700 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
18898772 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT
765 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCT
** * *
18898837 CC-GGTGATGGTGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAG
829 CCTGGCAATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * * * * * * *
18898888 CGCAGCATGTGCTGTCAAAACCTTCAGCCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGG
1 CCCAGCATGTGCTGCCACAACCCTCA-CCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18898953 TTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCAGGCGCTCAACC
65 TTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
* * * * * *
18899018 GACCAGAGGGGCGGGATGTGCAAGCCGGGGATCAACCGAGTCCCGCTCTGTGTGCTGTCGATCTT
129 GACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCT
* * * * * *
18899083 GCTGCCGTAACCCTCGGTTCGGTTCAATCTTAGAGTGGGAATGAACTCCGTATGCCTAACCCAAG
194 GCTGCCGCAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAG
* * *
18899148 CGAGGAAACGA-GCGGGCGGGCACTACGTCAGCCAGAGAGACGGGAAGCGCAAGCCGTGTATCGA
259 CGAGGAAACGAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
18899212 TAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
324 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
18899277 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
389 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
18899342 ATTTTTCATGATTTTTGAAA-TTTTTGCAGTTTGGGAATTTTTAAAAATTTTTC-GAAAGGAATT
454 ATTTTTCACGATTTTTGAAACTTTTTGCAGTTTAGGAATTTTTTAAAATTTTTCAG-AAGGAGTT
* * * *
18899405 TTGGCCCCAAACTTTGTAAACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAATATTCAGGTA
518 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
18899469 AAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA
583 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
18899534 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTT
648 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* * * *
18899599 TGATGAGGGATAGGAGGCAAATATAAGGGCCAAGTACCAGCACTCAACGCACATCATGTGCGCAC
713 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * *
18899664 A-CCCCCGGCCACCTCGATCGTCGGAACTCCAATGCCGTCGGTTAGGTTCT-CTGGCAATGGTGC
778 ACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCTGGCAATGGTGC
**
18899727 CCCGATGAAGAAAAATACTTCACCAGCACATGCCCGAG
843 CCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAG
* *
18899765 CCCAGCATGTGCTGCCGCAACCCTCGACCCGATTCGATCTTAGACTGGGAATGAACTCCGTTTGC
1 CCCAGCATGTGCTGCCACAACCCTC-ACCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGC
* *
18899830 TTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCC
65 TTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
* * * * * *
18899895 GACCAGAGGGGCAGGATGCGCAAGCTGGGGATCGACCGAGTCCCACTCTATGTGCTGTCGATCCT
129 GACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCT
* ** ** *
18899960 GCTACCGCAACCCTCGATTCAATTTGATCTTAGACTGGGAATGAACTCCGTCTGCCTAAGCCAA-
194 GCTGCCGCAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAG
** * * *
18900024 CAGACTAAACGAGCGGGCGGGCGGGCGGACACTACGCCAGCAAGAGAGACGGGATGCGCAAGCCG
259 C-GAGGAAACGA---GGCGGGC--G-GG-CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
18900089 TGGATCGATAGGGTGGTAGGTGAGTTTAGGCATATCTTCATATTTTTATGTGCAAATGCCATTTT
316 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
18900154 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
381 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
18900219 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTAGTTT-GGGATTTTTTAAAATTTTTC
446 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTAGGAATTTTTTAAAATTTTTC
18900280 TGGAAGGTGT
Statistics
Matches: 2813, Mismatches: 295, Indels: 188
0.85 0.09 0.06
Matches are distributed among these distances:
875 163 0.06
876 3 0.00
877 318 0.11
878 3 0.00
879 198 0.07
880 86 0.03
881 25 0.01
882 1 0.00
883 1 0.00
884 4 0.00
885 203 0.07
886 14 0.00
887 258 0.09
888 4 0.00
890 1 0.00
897 1 0.00
898 38 0.01
899 18 0.01
900 277 0.10
901 14 0.00
903 142 0.05
904 77 0.03
905 7 0.00
906 163 0.06
907 2 0.00
908 2 0.00
909 3 0.00
910 1 0.00
911 8 0.00
912 463 0.16
913 18 0.01
914 284 0.10
915 5 0.00
916 1 0.00
917 2 0.00
918 1 0.00
920 2 0.00
922 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (880 bp):
CCCAGCATGTGCTGCCACAACCCTCACCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCT
TAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGA
CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGC
TGCCGCAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAGCG
AGGAAACGAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTGCAGTTTAGGAATTTTTTAAAATTTTTCAGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCTGGCAATGGTGCCCC
GATGAAGAAAAATACGGCACCAGCACATGCCCGAG
Found at i:18901219 original size:26 final size:26
Alignment explanation
Indices: 18901190--18901241 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18901180 CGATCCGATT
18901190 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
18901216 TTAGACTGGGAATGATCTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18901242 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18903449 original size:26 final size:26
Alignment explanation
Indices: 18903420--18903470 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18903410 TTTTCTATTT
* *
18903420 TTCATGATTTTTGAAACTTTTTACGA
1 TTCAGGATTTTTGAAAATTTTTACGA
*
18903446 TTCAGGATTTTTTAAAATTTTTACG
1 TTCAGGATTTTTGAAAATTTTTACG
18903471 GAAGGAGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.51
Consensus pattern (26 bp):
TTCAGGATTTTTGAAAATTTTTACGA
Found at i:18903670 original size:904 final size:902
Alignment explanation
Indices: 18900926--18906557 Score: 7292
Period size: 904 Copynumber: 6.3 Consensus size: 902
18900916 AAGCCTTAAC
* *
18900926 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGCATAGGGGGCCA
1 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * **
18900991 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCCGGCACCCTTGA
66 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGA
* * *** * *
18901056 TCGTCGGAACCCCATTGCCATTGGTCAGGTTCTCCGATGATGCT-CTAGCGATGGTGCCCCGACG
129 TCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGA-CGATGGTGCCCCGACG
* * * *
18901120 AAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGATCCGATC
193 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * *
18901185 CGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGATCTCCGTATGCCTAAGTCA
258 TGATCTTA-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
18901250 ACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCG
322 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * *
18901315 ACCGGGTCCCCCTGTACATGCTGTCGATCTTGCTACTGCAACCCTTAGT-TGGGTCTGATCTTAG
387 ACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCT-GGTCTGATCTTAG
18901379 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC----GGGCGGGCGGGC
451 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGCGGGC
** * * * *
18901436 ACTACGCCAACCAGAGAGACGTGATGTGCAAGCCGTGGATAGATAGAGTGGTAGGTGGGTTTAGG
516 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
18901501 CACATCTTCATATTTCTCCATGCCAATGCCA-TTTTATGGCTTGTAAAGTCATACTATGGTCCCT
581 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
18901565 TAAGCCTTCACGTGAAGTTTCATGGCAAG-CTGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
646 TAAGCCTTCACGTGAAGTTTCATGGCAAGAC-GACTCGTTTTCTATTTTTCATGATTTTTGAAAC
** * *
18901629 TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTGGGCCCAAACTT-GTAGACG
710 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
18901692 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATT
775 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * * *
18901757 TTGTGACCATTTGAATAAGGTGTCCTCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCT
840 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
18901820 GTACAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCA
1 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
18901885 ATATAAGGGCCAAGTACCAGCACCCCTCACACATCATGTGCGCACACACCCCCGGCCCCCCCGAT
66 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCCGAT
* * * * *
18901950 TGTCAGAAACCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTCCGGCGATGGTGCCCCGGA-GA
130 CGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC-GACGA
* * * * * * *
18902014 AGAGAAATGCGGCACTAGCACATGCCCGAGCCCAGTATGTGCTGCCGTAACCCTCGATCCAGTCT
194 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* * *
18902079 AATCTTAAATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGATCTCCGTATGCCTAAGTCAA
259 GATCTT-AACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
18902144 CCCACGAAATGAGCGTGCGGGCGCTTAGCAGACCAGAGGGGCAGGATGCGCAAGCTGGGGATCGA
323 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * ** * *
18902209 TCAGGTCCCCCTCTGTGTGCTGTCGATCCTACTGCTGCAACCCTCAGTCCGGTCTGATCTCAGAC
388 CCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGAC
* * * * *
18902274 TGGGAATGAACTCCGTATACCTAAGCCAACCGATGAAACGAGC-GGCAGGCGAGGGGTGGGCAGG
453 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-G-TGGGCGGGCGGG
* * * * *
18902338 CATTACGCTGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGCGTGGTTGGTGGGTTTAG
515 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
18902403 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
580 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
18902468 TTAAGCCTTCATGTGAAGTTTCATAGCAAGCCGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
645 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* *
18902533 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
710 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
18902598 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
775 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
18902663 TTGTGACCATTTGAATAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
840 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
18902726 GTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGTGATACGGGGCCA
1 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
18902791 ATATAAGGGCCAAGTACCAGCACCCCTCACACATCATGTGCGCACACCCCCCTGGACCCTCCGAT
66 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGAT
* *
18902856 CATCGGAAACCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGA-GA
130 CGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC-GACGA
* * * * * *
18902920 AGAGAAATGCGGCACTAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCT
194 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* * * ** *
18902985 AATCTTAAATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATTACAAAGTCAA
259 GATCTT-AACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
18903050 CCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGG
323 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
** * * * * *
18903115 TTGGGTCCCCCTCTACGTGATG-CTGATCCTGCTGCCACAACCCTTGGTCTGATCCGATCTTAGA
388 CCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGA
* * * *
18903179 CTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGTGGGCGGGTGGGCA
452 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGCGGGCA
** * * * * * * *
18903244 CTACATCGGCGAGAGAGACGAGATGCGCATGCGGTGGATCGATAGGGTGGAATGTGGGTTTTGGC
517 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
***
18903309 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
582 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
18903374 AAGCCTTCAGGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
647 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * *
18903439 TTTACGATTCAGGATTTTTTAAAATTTTTACGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTT
712 TTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
**
18903504 ATCCTTGTATTTTTGTTGGCATTAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
777 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
18903569 GTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACCT
842 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
18903630 GTAAAATCTTAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
1 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
18903695 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGG-CCCCCCGATT
66 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * * * *
18903759 GCCGG-ACCCCAATACCGTCGGTCAGGTTCTCCGATGATGCTCTGACGGTGGTGCCCCGACGAAG
131 GTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAG
* *
18903823 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGGTGCCGCAA-CCT---T-C-G---G-
196 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGA
*
18903878 TC----C---G---G---TCCG-AT-CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCC
261 TCTTAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *** *
18903928 ACGAAACAAGCATGCGGGCGCTCAGCCGGCCAGAGGGGTAAGATGCGCAAGCCGGGGATCGATCG
326 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
* *
18903993 AGTCCCCCTCTGCGTGC--T-G--CC-G-T-----AACCCTTGGTCTGGTCTGATCTTAGGCTGG
391 GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGG
* * * * * *
18904046 GAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCAGGCAGGCACTGC
456 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGCGGGCACTAC
* * * ** * *
18904111 GTCGACCAAAGAGACAAGATGCGCAAGCCGTGGATGGATAGGGTGGTAGGTGTGTTTAGGCACAT
521 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
18904176 CTTCATATTTCTAG-GTGCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTACG
586 CTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
18904240 CCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTT-TTTATTTTAATGATTTTTGAAACTTTT
650 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT-TTTTCATGATTTTTGAAACTTTT
* * *
18904304 TACGGTTCAGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCTCCAAACCTGGTAGACGTGAT
714 TACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
18904369 CCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGC-AAACAACTCGGAGTGTACAAGATTTTG
779 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA-AACTCGAAGTGTACAAGATTTTG
* *
18904433 TGACCATTTGAAAAAAGTGACCCCATTTTCAGACACTTTAATGGCTACTGGTAGCAAACCT
843 TGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
18904494 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
1 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
18904559 ATATAAAGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGTCGGCCCCCCCCC
66 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC--CGG---CCCCCC
** * * * * * * *
18904624 CGATCACCAGAACCCCAATACTGCCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGG
126 CGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGA
* * * * * * **
18904689 TGAAGAAAAATTTGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAATCCTCTGTCCAT
191 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * *
18904754 TTTGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTATGT
256 TCTGATCTTA-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
18904819 CAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGTTGCGTAAGCCGGGGAT
320 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* ** * * * *
18904884 CGGCCATGTCCCCTTCTGCATGCTG-CTGATCCTGCTACCGCAACCCTTGGTGC-GGTCCGATCT
385 CGACCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTTGGT-CTGGTCTGATCT
* * * * *
18904947 TAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGATGAAACGAGCGGGCGGATGGACGGGCG
448 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGCG
* * *
18905012 GGCACTACGCC-GCCTAGAGAGACGGGATGCGCAAGCCTTGGTTCGATAGGGCGGTAGGTGGGTT
513 GGCACTACGCCGGCC-AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
**
18905076 TAGGCACATCTTCATATTTCTGCACACCAATGCCATTTTTATGGCTT-TAAATTCATACAATGGT
577 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
18905140 CCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCATGATTTTTGA
642 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * *
18905205 AACATTTTGCGGTTC-GAAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTA
707 AACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
18905269 GACATGATCCTTGTATTTTTTTTGGAATGAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
771 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
18905334 GATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAAC
836 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
18905399 CT
901 CT
* * *
18905401 GTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCACAAGGTTTGATGAGGGATAGGGGGCCA
1 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * ** **
18905466 ATATAAGGCCCAAGTACCAGCACCCACCGCACATGTTGTGCGCAC-CCCCCCGG-CCCCTTGATC
66 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * ** *
18905529 GTTGG-AACCCTAATGCCGCCGGTCAAGTTCTCCTAG-GATGCTCCGGTGATTGTGCCCCGACGA
131 GTCGGAAACCC-AATGCCGCCGGTCAGGTTCTCC-GGTGATGCTCCGACGATGGTGCCCCGACGA
* * * *
18905592 AGAAAAATGTGGCACCAGTACAGGCCCGAGCACAGCATGTGCTGTCGCAA-CC-C--T-C-G---
194 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* *
18905648 G----T--CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTTCTTATGCCTAAGTCAAC
259 GATCTTAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* *
18905697 CCACGAAACGAGCGTGTC-GGCGCTCAGCCGGCCAGGGGGGCGGGATACGCAAGCCGGGGATCGA
324 CCACGAAACGAGCGTG-CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * *
18905761 CCGGGTCCACTTCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTTGGTGTGGTCTGATCTGAGAT
388 CCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGAC
* * *
18905826 TGGGAATGAAATCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGT----GGGCAGGCAC
453 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGCGGGCAC
* * * * * *
18905887 TACGCCGGCTAAAGAGACGGGATGCGCAATCCTTGGATCGATAGGGCGGTAGGTGGGTTTTGGCA
518 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
18905952 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
583 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
18906017 AGCCTTCACGTGAAGTTTCATGGCAAGACGACACATTTTCTATTTTTCATGATTTTTAAAACTTC
648 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* *
18906082 TTGCGGTTCAGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
713 TTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
18906147 TCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
778 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
18906212 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCT
843 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
18906272 GTAAATTCTCAAATGCTCTTT-AGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCA
1 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
18906336 ATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGG-CCCCCCGATC
66 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * *
18906400 GTCGGAATCCCAATGCCGCCGGTTACGTTCTCCGGTGATGCT-CAAGCGATGGTGCCCCGATGAA
131 GTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGA-CGATGGTGCCCCGACGAA
* * * * *
18906464 GAAAAATGCGACACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCAGTCCG
195 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTG
18906529 ATCTTAGACTGGGAATGAACTCCGTATGC
260 ATCTTA-ACTGGGAATGAACTCCGTATGC
18906558 GTAACTCAAC
Statistics
Matches: 4162, Mismatches: 458, Indels: 233
0.86 0.09 0.05
Matches are distributed among these distances:
862 5 0.00
863 388 0.09
864 143 0.03
866 3 0.00
868 1 0.00
869 1 0.00
870 201 0.05
871 474 0.11
872 11 0.00
873 1 0.00
874 189 0.05
875 110 0.03
876 8 0.00
877 5 0.00
879 1 0.00
880 3 0.00
881 2 0.00
882 1 0.00
883 1 0.00
884 3 0.00
886 1 0.00
887 3 0.00
889 2 0.00
891 3 0.00
892 3 0.00
893 328 0.08
894 108 0.03
895 10 0.00
896 7 0.00
897 106 0.03
898 1 0.00
899 6 0.00
900 97 0.02
901 91 0.02
902 13 0.00
903 98 0.02
904 606 0.15
905 22 0.01
906 580 0.14
907 138 0.03
908 218 0.05
909 169 0.04
910 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
GTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAG
AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGA
TCTTAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGCGGGCACTAC
GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
CGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
Found at i:18904796 original size:26 final size:26
Alignment explanation
Indices: 18904760--18904812 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18904750 CCATTTTGAT
*
18904760 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18904786 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18904812 C
1 C
18904813 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18907384 original size:26 final size:26
Alignment explanation
Indices: 18907345--18907397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18907335 CCGGTCCGAT
18907345 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
* *
18907371 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
18907397 C
1 C
18907398 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:18909155 original size:26 final size:26
Alignment explanation
Indices: 18909115--18909167 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18909105 ATGGTCTGAT
*
18909115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
18909141 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
18909167 C
1 C
18909168 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:18910826 original size:25 final size:26
Alignment explanation
Indices: 18910792--18910843 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18910782 TCGGTCCAAT
18910792 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18910817 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18910843 C
1 C
18910844 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18910901 original size:184 final size:185
Alignment explanation
Indices: 18910586--18910999 Score: 571
Period size: 184 Copynumber: 2.2 Consensus size: 185
18910576 TGTGCTGTTA
* ** * *
18910586 CAACCCTCGGTCTGATCTGATCTTAGCCTGGGAATGAACTCTGTATGCTTAGACCGGGAATGAAC
1 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAAC
* * * * *
18910651 TCCGTTTGCCTAGGTCAACGCATGGAACGAGCATGCGGGCGCTCAGCCGACCAGAGGGGCGGGAT
66 TCCGTATGCCTAGGTCAACCCACGAAACGAGCATGCGGGCGATCAGCCGACCAGAGGGGCGGGAT
* * * * *
18910716 GCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGTGTGTTGCCGATCCTACTACCG
131 GCGCAAGCCGAGGATCGGTCGAGTCCCCCTTTGCGTGCTACCAATCCTACTACCG
*
18910771 CAACCCTCGGT-TCGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAA
1 CAACCCTCGGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAA
* * * * *
18910834 CTCCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGGTCGATCAGCTGGCCAGAGGGGTGGGA
65 CTCCGTATGCCTAGGTCAACCCACGAAACGAGCATGCGGGCGATCAGCCGACCAGAGGGGCGGGA
* * *
18910899 TGCGCAAGCCGGGGATCGGTCGAGTCCCTCTTTGCGTGCTACCAATCCTACTACTG
130 TGCGCAAGCCGAGGATCGGTCGAGTCCCCCTTTGCGTGCTACCAATCCTACTACCG
* *
18910955 CAACCCTCGGTCTGGTCCAATCTTGGACTGGGATTGAACTCCGTA
1 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTA
18911000 CGCCTAAGCC
Statistics
Matches: 200, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
184 162 0.81
185 38 0.19
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (185 bp):
CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAAC
TCCGTATGCCTAGGTCAACCCACGAAACGAGCATGCGGGCGATCAGCCGACCAGAGGGGCGGGAT
GCGCAAGCCGAGGATCGGTCGAGTCCCCCTTTGCGTGCTACCAATCCTACTACCG
Found at i:18911738 original size:26 final size:26
Alignment explanation
Indices: 18911689--18911741 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18911679 CCGATCCAAT
* * *
18911689 CTTAGACTAGGAATGAATTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
18911715 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
18911741 C
1 C
18911742 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:18911900 original size:26 final size:26
Alignment explanation
Indices: 18911862--18911914 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18911852 CTAGTCTGAT
18911862 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18911888 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18911914 C
1 C
18911915 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18911971 original size:173 final size:173
Alignment explanation
Indices: 18911687--18912011 Score: 524
Period size: 173 Copynumber: 1.9 Consensus size: 173
18911677 GTCCGATCCA
* *
18911687 ATCTTAGACTAGGAATGAATTTCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAAC
* * * *
18911752 CCACAAAACGAGCGTGTGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
66 CCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGGT
*
18911817 CAGGTCCTCCTCTGCATGTTGCCGCAACCCTCGGTCTAGTCTG
131 CAGGTCCCCCTCTGCATGTTGCCGCAACCCTCGGTCTAGTCTG
* * *
18911860 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAGGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAAC
* *
18911925 CCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAAATGGACGGGATGCGCAAGCTGGGGATCGGT
66 CCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGGT
* *
18911990 CGGGTCCCCCTCTGCGTGTTGC
131 CAGGTCCCCCTCTGCATGTTGC
18912012 TGATCCTACT
Statistics
Matches: 138, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
173 138 1.00
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.21
Consensus pattern (173 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAAC
CCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGGT
CAGGTCCCCCTCTGCATGTTGCCGCAACCCTCGGTCTAGTCTG
Found at i:18912176 original size:158 final size:158
Alignment explanation
Indices: 18911888--18912234 Score: 392
Period size: 158 Copynumber: 2.2 Consensus size: 158
18911878 ACTCCGTATG
* * **
18911888 CTTAGACTGGGAATGAATTCCGTATGCCTAGGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACAAAACGAGCGTACGGGCAATCAGC
* * * * * *
18911953 CGGCCAAATGGACGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGTTGCTGATCC
66 CGGCCAAAGGGACGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTAATCC
18912018 TACTCTGCAACCCTCACCCTAGTTCGAT
131 TACTCTGCAACCCTCACCCTAGTTCGAT
* * * * *
18912046 CTTAGACTGGGAATGAACTCTGTATGCCTAGGTCAGCCCACGAAATGAGCGTACGGTCAATCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACAAAACGAGCGTACGGGCAATCAGC
* * * *
18912111 TGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCTTCTGCGTGCTG-TCAATC
66 CGGCCAAAGGGACGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCT-AATC
* *** **** *
18912175 CTGCTGCCATAACCCTTGGTCT-GGTCTGAT
130 CTACT-CTGCAACCCTCACCCTAGTTC-GAT
*
18912205 CTTAGACTGGGAATGAACTTCGTATGCCTA
1 CTTAGACTGGGAATGAACTCCGTATGCCTA
18912235 AGCCCACCAA
Statistics
Matches: 156, Mismatches: 30, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 115 0.74
159 40 0.26
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACAAAACGAGCGTACGGGCAATCAGC
CGGCCAAAGGGACGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTAATCC
TACTCTGCAACCCTCACCCTAGTTCGAT
Found at i:18912937 original size:26 final size:26
Alignment explanation
Indices: 18912908--18912957 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18912898 CCAATCCGAT
18912908 CTTAGACTGGAAATGAACTCCGTACG
1 CTTAGACTGGAAATGAACTCCGTACG
*
18912934 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGAAATGAACTCCGTA
18912958 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTACG
Found at i:18913847 original size:26 final size:26
Alignment explanation
Indices: 18913809--18913861 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18913799 TCGGTCTGAT
* *
18913809 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18913835 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18913861 C
1 C
18913862 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18914542 original size:26 final size:26
Alignment explanation
Indices: 18914513--18914565 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18914503 CTGATCCGAT
*
18914513 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18914539 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18914565 C
1 C
18914566 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18915441 original size:26 final size:26
Alignment explanation
Indices: 18915412--18915464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18915402 CTGGTCCGAT
*
18915412 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18915438 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18915464 C
1 C
18915465 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18916329 original size:26 final size:26
Alignment explanation
Indices: 18916300--18916352 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18916290 CTGGTCTGAT
* *
18916300 CTTAGACTGGGAATGATCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18916326 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18916352 C
1 C
18916353 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18917211 original size:13 final size:13
Alignment explanation
Indices: 18917193--18917219 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18917183 TGATCTTAGA
18917193 CTGGGAATGAACT
1 CTGGGAATGAACT
18917206 CTGGGAATGAACT
1 CTGGGAATGAACT
18917219 C
1 C
18917220 CATATGCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22
Consensus pattern (13 bp):
CTGGGAATGAACT
Found at i:18918099 original size:26 final size:26
Alignment explanation
Indices: 18918070--18918122 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18918060 CCGGTCCGAT
*
18918070 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18918096 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18918122 C
1 C
18918123 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18919679 original size:892 final size:891
Alignment explanation
Indices: 18914089--18929971 Score: 19075
Period size: 877 Copynumber: 17.9 Consensus size: 891
18914079 TTTTTCACGA
* * * * *
18914089 TTTTCAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTTT
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
18914154 TTGGCATGCAAAAAAAAATTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * * *
18914219 AAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGGAAAATGTCAAATGCCCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * *
18914284 TTAATGGGGTGTGAGTGCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
18914349 GCACCCATCGCACAGCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGC
261 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGC
* * * * **
18914413 CCGTCAAGTTCT-C--CGA--------CGATGGTGCCCAG-TGAAGAAAAATATGGCACCAGCAC
326 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
** * * *
18914466 ATGGTCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAAC
391 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAAC
*
18914531 TCCGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
455 TCCGTATGCTTAGACTGGGAATGAAC-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * *
18914596 TGCTCAACCGACCAGAGGGGCAGGATGCGCAAGCTGTGGATC-GATCGGGTCCCCCTCTGTGTGC
519 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGCT-GGGTCCCCCTCTGCGTGC
* * * * * * ** *
18914660 TACCAATCCTACTGCCGTAACCCTCGATCTGGTCATATCTTAGACTGGGAAGGAACTCCGTATGC
582 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18914725 CTAAGCCGACCGATGAAACGATCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
647 CTAAGCCAACCGACGAAA-GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
18914790 AGCCGTGGATCGATAGAGTGGTAGGTGGGTTTACGTACAT-TTCATATTTCTACGTGCCAATGCC
711 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
18914854 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
776 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
18914919 TGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTTGGGAT
841 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
*
18914970 TTTTTAAAATTTTTTTGGAAGGA-TATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
1 TTTTTAAAATTTTTTCGGAAGGAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
18915034 GTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTTGAAGTGTATAAGATTTTGTGACCATTTGAA
65 GTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * *
18915099 AAAAGTGTCCCCATTTTCAGACACTTTAGTGGCTACTAGAAGCAAACCTATAAAATCTCAAATGC
129 AAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * *
18915164 TCTTTAAAGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTA
193 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
*
18915229 CCAGCACCCATCACACATCATGTGCGCACACTCCCCCCCGGCCCCCCCGATCGCCGGAACCCCAA
258 CCAGCACCCATCGCACATCATGTGCGCACA---CCCCCCGGCCCCCCCGATCGCCGGAACCCCAA
* * * *
18915294 TGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCAC
320 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * * *
18915359 CAGCACATGCCCGAGCCCAGCATGTCCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGATTGGGA
385 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGA
18915424 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCG
449 ATGAACTCCGTATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * ** * *
18915489 TGCGGGCGCTCAGTCGGCCAGAGGGCCAGGATGAGCAAGCCAGGGATTAGCTGGGTCCCCTTTTG
513 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCTGGGTCCCCCTCTG
* * * * * *
18915554 CGTGCTGCCTATCTTGCTACCGCAACCCTTGGTCTGTTCCGATCTTAGA-TGGGAATGAACTCCG
577 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * **
18915618 TATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGGGCGGGCACTACGCCGGCCAGGGAGACGTA
642 TATGCCTAAGCCAACCGACGAAA-GAGCGGGC--GGGCGGGCACTACGCCGGCCAGAGAGACGGG
* *
18915683 ATGCGCAAGTCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
704 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
*
18915748 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCAT
769 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
18915813 GGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGAT
834 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
* *** * *
18915871 TTTTTAAAATTTTTTCGAAAGGAGTTTTGGGGACAAACTTGGTAGATGTGATCCTTGTATTTTTA
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
18915936 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAA
*
18916001 AAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * * *
18916066 TTTAAGGGGGTGTGAGTTTTTGAGGTTTCATGAGGGATAGGGGGACAATATAAGGGCCAAGTACG
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
18916131 AGCACCCATCGCACATCATGTGTGCACA---------CCCCCTGATAGTCAGAACCCCAATGCCG
260 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG
* * * * ** ***
18916187 TCGATCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTTTCACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * * * *
18916252 CATTCCCGAGCCTAGCATGTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAT
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAA
* * *
18916317 CTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGG
454 CTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * **
18916382 GCGCTCAGCCGGCCAGCGGGGCAGGATGTGCAAGCCAGGGATCGG-TCGGGTCCCCCTCTATGTG
518 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCT-GGGTCCCCCTCTGCGTG
* * * * *
18916446 CTGCCGATCCTGCTACCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
581 CTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* **
18916511 CCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGGCACTACGCCGGCCAGAGAGATAGGATGCG
646 CCTAAGCCAACCGACGAAA-GAGCGGGCGGGC-GGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * *
18916576 CAAGCCATGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATAATTCTGCATGCCAATG
709 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* *
18916641 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACTTGAAGTTTCATGGCAA
774 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * **
18916706 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTCACGGTTCGGGATT
839 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGA-T
** * *
18916760 TTTTTAAAATTTTTTTAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCTTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
18916825 TTGGCATGCACAAAAAAATTCAGCTAAAGAGTCGAAGTGTACAAGATTTTCTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
18916890 AAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
18916955 TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTAGCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
18917020 GCATCCAACGCGCATCATGTGCGCACACCCCCCGGGCCCCCCCGATTGCCGGAACCCCAATGCCG
261 GCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCG
* * *
18917085 CCCGTCAAGTTCT----C---G----GGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * * *
18917139 CATGCCCGTGCCCAGCATGTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATG-A
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAA
* * * *
18917203 ------A--C-T---CTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGATCGTGCGG
454 CTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * *
18917256 GTGCTCAGCAGGCCAGAGGGGCGGGATGCACAACCCGTGGATCGG-TCGGGTCCCCCTCTGTGTG
518 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGCT-GGGTCCCCCTCTGCGTG
* * * ** *
18917320 CTACCGATCCTGCTGCCGCAACCCTCGATCTGGTCATATCTTAGACTGGGAATGAACTCTGTATG
581 CTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18917385 CCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGGTGAGCACTACGCCGACCAGAGATACG
646 CCTAAGCCAACCGACGAAA-GA----GCGGGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACG
* *
18917450 GGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
702 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
* *
18917515 GCCAATGCCATTTTGATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTC
767 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
18917580 ATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
832 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
* * *** * *
18917640 TTTTTTAAATTTTTTCGGAAGGAGTGTTGGGGACAAACTTGGTAGATGTCATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
18917705 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATCTTGTGACGATTTAAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAA
*
18917770 AAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * *
18917835 TTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACG
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
18917900 AGCACCTATCGCACATCATGTGCGTACA--------CCCCCCCGATCGTCGGAACCCCAATGTCG
260 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG
* * * * * * **
18917957 TCGATCAGGTTCTCCTGTGATGCTCCGACGATGGTTCCCC-AGCGAAGAAAAATGTTGCACCAGC
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGC
* * *
18918021 ACATGCTCGAGCCCAGCTTGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGA
* * *
18918086 TCTCCGTATGCTTAGACTGGGAATGAACTCGGTATGCCTAAGTCAACCCACGAAATGAGCGTGCA
453 ACTCCGTATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * *
18918151 GTCACTCAGCCGGCCAGCGGGGCGGGATGTGTAAGCCGAGGATC-GATCGGGTCCCCCTCTGTGT
517 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGCT-GGGTCCCCCTCTGCGT
* * * *
18918215 GCTACCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
580 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18918280 GCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGAGCACTATGCCGGCCAGAGAGACGAGA
645 GCCTAAGCCAACCGACGAAA-GA---G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
*
18918345 TGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA--T-T---T---
705 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* * *
18918401 --TG--------ATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTGACTTGAAGTTTCATG
770 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * **
18918456 GCAAGATGACTCGTTTTCTATTTTTCACGATTTT-GAAATTTTTTGCGTTTCAAGAT
835 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
* * *
18918512 TTTTTAAAATTTTTTCTGTAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
18918577 TTGGCATGCA-AAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
18918641 ATGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
18918706 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
18918771 GCACCCATCACACATCATGTGCGCACACCCCCCGGCCCACTCGATTGCCGAAACCCCAAT-CTCG
261 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC-CG
* *
18918835 CCGGAT-AGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAGAAATGCGGCACCAGC
325 CCGG-TCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * *
18918899 ACATGTCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTGCAGTCCAATCTTAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGA
* * *
18918964 ACTCCATATGCTTAGACTTGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGG
453 ACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
** * * * * *
18919029 GCGCTCAGCCGATCAGAGGGGCGGGATGTGCAAGCAAGGGATTGGCTGGGTCCCCCTCCGTGTGC
518 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGATCGGCTGGGTCCCCCTCTGCGTGC
* *** * * *
18919094 GGCCGATCCTGCTGCTATAACCCTCGATCCGGTCCGATCTTAGACTGGTAATGAACTACGTATGC
582 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
*** *
18919159 CTAAGCCAACCGAC-AAA-A-CAAACGGGCGGGCACTACGCCGGCCAGAGAGA-TGGATGCGCAA
647 CTAAGCCAACCGACGAAAGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18919220 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCA
712 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
18919285 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGAC
777 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18919350 TACTCGTTTTCAATTTTTCAACGATTTTCGAAAACTTTTTGCGGTTCGGGAT
842 GACTCGTTTTCTATTTTTC-ACGATTTTCG-AAACTTTTTGCGGTTCGGGAT
* *
18919402 TTTTTAAACTTTTTTCGGAAGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
18919467 TTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
18919532 AAGTGTCCCAATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
131 AAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * ***
18919597 TTTAAGGGGGTGTGAGTTCTCGAGTTTTCATGAGGGATAGGGGGCCAATATAAGTAACAAGTACC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
18919662 AGCACCCATCGCACATCATGTGCGCACAGCCCCCAGG-CCCCCCGATTGCAGGAACCCTAATGCC
260 AGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC
* ** * * * *
18919726 GTCGGTCAGGTTCTCCGATGATGCCCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGC
324 GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * *
18919791 ACATGCCCGAGCCTAGCATGTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGA
*
18919856 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
453 ACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * *
18919921 GGTGCTCAACAGGCCAGAGGGGCGGGATGCGCAAGCCAGGCATCGG-TCGGGTCCCCCTTTGCGT
517 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCT-GGGTCCCCCTCTGCGT
* * * ** * *
18919985 GCTGCCGATCCTACTGCCACAACCCTAGGTCCAATCCAAGCTTAGACTGGGAATGAACTCCGTAT
580 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* ** *
18920050 GCCTAAGCCAACCGACGAAACGAGCTAGCGGACGGACGGGCGGCCACTACGCCAACCAGAGAGAT
645 GCCTAAGCCAACCGACG-AA--AG--AGC-G--GG-CGGGCGGGCACTACGCCGGCCAGAGAGAC
* * * *
18920115 GGG-TGCGCAGGCCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTTTGCA
701 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
*
18920179 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTT
766 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
18920244 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGAT
831 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
* ** * * * * *
18920305 TTTTTAAAATTTTTTCAGAATAATTTTTGGGCCCAAACATGGTAGACTTGATCCCTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
18920370 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
18920435 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAACAAACCTATAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
18920500 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACTA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * * *
18920565 GCACCCATCGCATATCCTGTGTGCACACCCCTCC-GCCCCCCCGATCGTCAGAACCCCAATGCTG
261 GCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCG
* * * * *
18920629 CCAGTCAGGTTCTCCGGCGATGCACCGGCAACGGTGCCCCGACGAAGAAAAATACGGCACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * ** *
18920694 CATGCCTGAGCCAAGCATTTGCTATCGCAA--C-C---C--TCAG-TC-T--A----G--T---C
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAAC
* *
18920738 T--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCGTACGGG
455 TCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * *
18920799 CGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGCGGGGCCCCCCTCTACGTGCT
519 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCGGCTGGGTCCCCCTCTGCGTGCT
* * * * * * * * *
18920864 CCCAAACCTGCTACCGTAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCC
583 GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* *
18920929 TAAGCCAACCGACGAAACGAGTGGGCGGGCGAGCGGGCGGGCACAACGCCGGCCAGAGAGACGAG
648 TAAGCCAACCGACGAAA-GA----GC--G-G-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* *
18920994 ATGCGCAAGCCGTGGATC-AGTAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
704 ATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
* *
18921058 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGCAGTTTCA
768 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * ** *
18921123 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGTGAT
833 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
* * * * *
18921182 TTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAATCTTGCTAGACATGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
18921247 TTGGCATGCACAAACAAATTCAGCTAAAAACTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
18921312 AAGTGTCCCCTTTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
18921377 TTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
18921442 GCACCCATCGCACATCATGTGCGCACACCCCCCCG-ACCCCCTATCGTCGGAACCCCAATGCTG-
261 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGC
* * * * *
18921505 CAGTCAGGTTCTCCGGCGATGCACCGGCAACGGTGCCCCGACGAAGAAAAATGCGGCTCCAGCAC
326 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * * *
18921570 ATGTCTGAACCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCCGTTCTTAGACTGGGAATGAA-
391 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAAC
* *
18921634 --C---T-C-----C--------AA-----ATGCCTAAGTCAACCCACGAAACGATCGTGCGAGC
455 TCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * *
18921675 ACTCAGCAGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGCCT-GGTCCCCCTCTACGTGCT
520 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCGG-CTGGGTCCCCCTCTGCGTGCT
* ** * * * *
18921739 ACCGATCCTGCTGCCGCAACCCTTAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCATATGGC
583 GCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
** * * *
18921804 TAAGCCAATAGACGAAACGAGTGGGCGAGCTGGCGGGCGGGCACTACGACGGCCAGAGAGACTGA
648 TAAGCCAACCGACGAAA-GA----GC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * *
18921869 ATGCCCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTGGGCATATCTTCATATTTCTGCGTGC
704 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
* * *
18921934 CATTACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCAT
769 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * **
18921999 GGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA-TTTTTGTGGTTCTCGAT
834 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
** *
18922056 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGTGCCAAACTTGGTAGACGTGATCCTTGTATTTTTA
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
** * *
18922121 TTGGCATGCACAAAAAAATTCATTTGAAAACTCGAAGTGTATAAGATTTTTGTGACCATTTGAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAA
* * *
18922186 AAAGTGTCCCTATTTCAGACACTTTAATGGCAATTGGCAGCAAACCTGTAAAATCTCAAATGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
18922251 TTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
18922316 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGTCCCCCCCGATCGCCGAAACCCCAATGCC
260 AGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC
* * * *
18922381 GTCGGTCATGTTCTCCGACGATGCT----C-----T-----GACGAAGAAAAATGCGACACCAGC
324 GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* *
18922432 ACATGCCTGAGCCCAGCACGTGCTGCCGCAA-CC-C--TCGGT---A-C----A----G--T---
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAA
* *
18922476 -T-CG-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGACCGTGCGG
454 CTCCGTATGCTTAGACTGGGAATGAAC-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * **
18922537 GCGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGAGCATCGG-TCGGGTCCCCTTCTGTATG
518 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGCT-GGGTCCCCCTCTGCGTG
* * * * * * * *
18922601 CTGTCGATCCTGCTACCACAACACTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATG
581 CTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
18922666 CCTAAGCCAACCGATGAAATGAGCGGGCGGGCGGGCGGGCGGGCGGGTGGGCACTACGCAGGCCA
646 CCTAAGCCAACCGACGAAA-GA------------GCGGGCGGGC----GGGCACTACGCCGGCCA
* * *
18922731 GAGAGATGTGATGCGCAAGCCGTGGCTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
694 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
18922796 TTTTGGGTGCCAATGCCATTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
759 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * * *
18922861 GAAGTTTCTTGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCCAAACTTTGTACGGTTCGG
824 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGG
18922926 GAT
889 GAT
*
18922929 TTTTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
18922994 TGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
18923059 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-T
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
18923123 TTGAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACC
196 TT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * **
18923188 AGCA-CAACTCGCACATCATGTGTGCACA-------ACCCCCCC-ATCATCGGAACCCCAATGCC
260 AGCACCCA-TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC
* *
18923244 GCCGGTCAGGTTCT-C--CGA--------CGATGGTACCCCGACGAAGAAAAATGCGACACCAGC
324 GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* ** * *
18923298 ACAAGCCCGAGCCCAGCATGTGCTATCGCAACCATCGGTCTGGTCCGATCTTAGATTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGA
* * * * *
18923363 ACTCCGTATGCTTATACTGGGAATGAATTTCGTATGCCTAAGTCAACTCATGAAACGAGCGTACG
453 ACTCCGTATGCTTAGACTGGGAATGAA-CTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * *
18923428 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGCATCAG-TCCGGTCCCCCTCTGCGT
517 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGCT-GGGTCCCCCTCTGCGT
* * ** * * * ** * *
18923492 GCTACTGATGTTGCTGCCACAACGCTCGGTCCGATCAAACCTTAGACTGGGAATGAACTCTGTAT
580 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
18923557 GCCTAAGCCAACCGACAAAACGAGCGGGCGAGCAGGCACTATGCCGGCCAGAGAGACGGGATGAG
645 GCCTAAGCCAACCGACGAAA-GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * *
18923622 CAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGCGCCAATG
709 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* *
18923687 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGCCAA
774 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
18923752 GACGACTCATTTTCTATTTTTCACGATTTTTGAAAC-TTTCGGGGTTCGAGAT
839 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
* * * *
18923804 TTTTTAAAAATTTTTT-GAAAGGAGTTTTTGCCCCAAGCTTGGTAGATGTGATCCTTGTATTTTT
1 TTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * * *
18923868 TTTGACATCCACAAAAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAA
65 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
18923933 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
18923998 ATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * * *
18924063 AGCACCCTTCACACATCATGTGCACACACTCCCCCGGCCCCCCTGATCGTCGGGACCCCAATGCC
260 AGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC
* * *
18924128 GCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGACACCAGC
324 GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * * * *
18924193 ACCTGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGA
** * * * *
18924258 ACTCCGTATGCTTAGACAAGGAATAAACTCCCTATGCCTAAGTCAACCCACGAAACGAACGTGCA
453 ACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* ** * * * * *
18924323 GGCGCTCAACCGGCCAGAGGGGCGGGATGCAAAAGCTCGGGACCAGCCGGGTCCCACTCTGCATG
517 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGATCGGCTGGGTCCCCCTCTGCGTG
* * *
18924388 CTGCCGATCCTGCTGCCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
581 CTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
18924453 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCAGTACGCCGGCCAGAGAGATG
646 CCTAAGCCAACCGACGAAA-GA--------GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * * * **
18924518 CGACGCGCAAGCCGTGGATCGATAAGGTGGTAGGTCGGTTTAGGCACATCTTCAAATTTCTGTAT
702 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
* *
18924583 GCCAACGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
767 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * *
18924648 ATGGCAAGACGACTCATTTTCTATTTTTTACGATTTTCAAAACTTTTTACGGTTCGAGAT
832 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
* ** * * * *
18924708 TTTTTAAAATTTTTTCGAAAGGAGTTTTGTTCCCAAACTAGGTGGATGTGATCCTTGTATTTCTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
18924773 TTGGCACGTATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
18924838 AAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * *
18924903 TTAAAGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATACAAGGGCCAGGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
18924968 GCACCCATCACACATCATGTGCGCACACCCCCCGG-CCCCCCAATCGTCGGAACCCTAATACCGC
261 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGC
* * * ** ** * *
18925032 CGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGGAAGAAAAATATGGCAGCAACAC
326 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
18925097 ATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC-G---G-TC-----C----AAT---CT
391 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACT
* * * * * *
18925141 --G-AT-CTTAGATTGGGAAGGAACTCTATATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGC
456 CCGTATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
18925202 GCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTG
520 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCTGGGTCCCCCTCTGCGTGCTG
* * * * * * * ** *
18925267 CCAATCTTGCTGCCACAACCGTCAGTCTGGTCTGATCTTAGACTAAGAATGAACTCCATATGCCT
584 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
18925332 AAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGGCAGAGAGACGGGATGCGCAGG
649 AAGCCAACCGACGAAA-GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
18925397 TCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
713 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * *
18925462 TTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATG
778 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
18925527 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGAT
843 ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
* *
18925576 TTTTTAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTC
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
18925641 TTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
18925706 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCCAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
** * * **
18925771 TTAAGGGAATGCGAGTTCTCGATGTTCCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
** * * * *
18925836 GCACCCATCATACATCATGTGCGTACACCCCCCGG-CCCCCGGATCACCGGAACCCCAATACCGC
261 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGC
* * *
18925900 CAGTCAGGTTCT-C--C---G----GG-GATGGTGCCCCGACAAAGAAAAATGCAGCACCAGCAC
326 CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
** * * *
18925954 ATGCCCGAGCCCAGCATGTGCTGCTACGACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAAC
391 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAAC
* * * * *
18926019 TCCGTATGCTTAGACT-GG---GACCCCGTATGCCTAAGTCAACCAATGAAACAAGCGTGCGGGC
455 TCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* ** * *
18926080 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGTGGATCAGCCAGGTCCCCCTCTACGTGCTA
520 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGCTGGGTCCCCCTCTGCGTGCTG
* * * * * ** *
18926145 CTGATCCTACTACCGTAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCTGTATGCCT
584 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* ** *
18926210 AAGCCAATCGACGAAATGAGCGGGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGTAAG
649 AAGCCAACCGACGAAA-GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
**
18926275 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
713 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
** * * *
18926340 TTTTATCACTTGTAAATTCAGACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGGCG
778 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
18926405 ACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGAGAT
843 ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
* * * *
18926454 TTTTTTAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
18926519 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
18926584 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCCAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
** * * **
18926649 TTAAGGGAATGCGAGTTCTCGATGTTCCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
** * * *
18926714 GCACCCATCATACATCATGTGCGCACACCCCCCCGG-CCCGCCGATCGCCAGAACCCCAATGCCA
261 GCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG
** * *
18926778 CTAGTCAGGTTCT-C--C-A------GG-GATCGTGCCCC-AGCGAAGAAAAATGCAGCACCAGC
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGC
* * * *
18926831 ACACGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGA
* *
18926896 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTGCG
453 ACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
** * ** * *
18926961 GGCGCTCAATCGGCCAGAAGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTCAGCGTA
517 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCTGGGTCCCCCTCTGCGTG
* * * * * * *
18927026 CTACTGATCCTACTGCCGTAACCCTCGGCCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
581 CTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18927091 CCTAAGCCAACCAACGAAACGAGTGGGTGGGTGGGTGGGTGGGCACTACGCCGGCCAGAGAGACG
646 CCTAAGCCAACCGACGAAA-GA--------GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * *
18927156 GGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCATATCTTCATATTTCTACGT
702 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
* * *
18927221 GCCAATGCCATTTTGATGGCTTGTACATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTC
767 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * *
18927286 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGAAT
832 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
* *** ** *
18927346 TTTTTAAAATTTTTTCGAAAGGAGTTCCAGCCCCAAACTTCTTAGACGTGATCCTTGTATTTTTC
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * * *
18927411 TTAGCATGCAC-AAAAAAGTCAGCTAAAAAGTTGAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
18927475 AAGTGCCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
18927540 TTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAATGGCCAAGTACTA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
18927604 GCACCCATCGCACATCATGTGCGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCC
261 GCACCCATCGCACATCATGT--GCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC
* * * **
18927669 GCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCAGGGGAAGAAAAATGCGGCACCAGC
324 GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * * * ** *
18927734 ACATGCCTGAGCACAGCATGTGCTGCCGTAACGCTTGGTCCGGTTTGATCTTAGACCGGGAATGA
389 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGA
*
18927799 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACG
453 ACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * *
18927864 GGCGCTCAGTCAGCCAGAGGGGCGGGATGCACAAGCCGTGGATCGGCCGGGTCCCCCTC-ACGTG
517 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGCTGGGTCCCCCTCTGCGTG
* * * * ** * * *
18927928 CTACCGATCCTGCTGTCACAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATTAACTTCGTATG
581 CTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18927993 GCTAAGCCAACC-ACCAAACGAGCAGGCGGGCGGGCAAGCGGGCACTACGCCGGCCAGAGAGACC
646 CCTAAGCCAACCGA-CGAA--AG-A-GCGGGC-GG---GCGGGCACTACGCCGGCCAGAGAGACG
* * * * * *
18928057 GGATGCGCAAGCCGTGGATCGATAAGATAGTTGGTGGGTTTAGGCACATCTTCATATTGCTGCAT
702 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
*
18928122 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAAGTTTC
767 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * **
18928187 ATGGCAAGACGACTCATTTTCTATTTTTCATGGTTTTCAAAACTTTTTATGGTTCGGGAT
832 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
* * * *
18928247 TTTTTAAAATTTTTTCGGAAGGAG-TTCGACCCCAAACTTGTTAGACGTGATCCTTGTATTTTTC
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * * * *
18928311 TTAGCATGCAC-AAAAAATTCAGCTAAAAACTCAAACTGCACTAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
18928375 AAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGT-AAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
18928439 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCTAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
18928504 GCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCTG
261 GCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCG
* * * * * **
18928569 TCGGTCAGTTTCTCCGACAATGCTCCGGCGATGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * *
18928634 CATGCCCGAGCCCAACATGTGCTACCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAA
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAA
* ** * *
18928699 TTGTGTGTGCTTATACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
454 CTCCGTATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * ** *
18928764 CCGTTCAGCCTGCCAGAGGGGCGGGATGCACAGGCCAGGGATCGGCTGGGTCCCCTTCTGTATGG
518 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCTGGGTCCCCCTCTGCGTGC
* * * * * *
18928829 TGCCGATCGTGCTGCTGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTGTGC
582 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18928894 CTAAGCCAACCGACGAAATGAGCGTGCGGGCGGGCAGGCGGGTACTACGCTGGCCAAAGAGACGG
647 CTAAGCCAACCGACGAAA-GA----GCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGG
* * *
18928959 GATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTTTGCATG
703 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
* *
18929024 CCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCA
768 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * **
18929089 TGGTAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGAT
833 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
18929148 TTTTTAAAATTTTTTCGGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
1 TTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * *
18929213 GTTGGCATGCAGAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGGAA
65 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
*
18929278 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
18929343 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-TC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
18929407 AGCACCCATCACGCATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCCGAACCCTAATGTCG
260 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG
* * ** * * ** *
18929472 GCGATCAGGTTCTCCGGTAATGCACTGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCA
325 CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * *
18929537 CATGCCCCAGCCCAGCATGTGCTGTCGCAACCCT---T-GGTCCAATC-----C---G-AT---C
390 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAAC
* * *
18929586 T---TA--C--AG--TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGTG
455 TCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
18929642 CGCTCAGTCGGCCA-AGGGGGTGGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATCC
519 CGCTCAGCCGGCCAGA-GGGGCGGGATGCGCAAGCC-GGGATCGGCTGGGTCCCCCTCTGCGTGC
* * * * * *
18929706 TGCCGATCTTGCTGCCGTAACCCTCTGTCCGGTCCAATCTTAGACTGGGAAAGAACTTCGTATGC
582 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
*
18929771 CTAAGCCAACCGACGAAACGAGCGAGCGGGCGAGCGGACGGGCACTACGTCGGCCAGAGAGACGG
647 CTAAGCCAACCGACG-AA--A--GAGCGGGC--G-GG-CGGGCACTACGCCGGCCAGAGAGACGG
* * * * * **
18929836 GATGTGCAAGCCGTGGATCGATATGGTTGTAGGTGGGTTTATGCACATCTTCATATTTATATGTG
703 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
**
18929901 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCA
768 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
18929966 TGGCAA
833 TGGCAA
18929972 TATTTTGGGA
Statistics
Matches: 13099, Mismatches: 1515, Indels: 780
0.85 0.10 0.05
Matches are distributed among these distances:
843 1 0.00
845 3 0.00
847 1 0.00
850 1 0.00
851 1 0.00
855 1 0.00
856 1 0.00
857 55 0.00
858 5 0.00
859 4 0.00
860 5 0.00
861 2 0.00
862 5 0.00
863 34 0.00
864 202 0.02
865 1 0.00
866 51 0.00
867 4 0.00
868 566 0.04
869 28 0.00
870 153 0.01
871 55 0.00
872 459 0.04
873 196 0.01
874 295 0.02
875 876 0.07
876 610 0.05
877 946 0.07
878 831 0.06
879 168 0.01
880 129 0.01
881 425 0.03
882 68 0.01
883 238 0.02
884 203 0.02
885 6 0.00
886 11 0.00
887 206 0.02
888 639 0.05
889 166 0.01
890 136 0.01
891 218 0.02
892 861 0.07
893 166 0.01
894 6 0.00
895 278 0.02
896 191 0.01
897 7 0.00
898 116 0.01
899 522 0.04
900 502 0.04
901 661 0.05
902 423 0.03
903 709 0.05
904 404 0.03
905 246 0.02
906 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (891 bp):
TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGC
CGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCC
GATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAAGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAT
Found at i:18919869 original size:26 final size:26
Alignment explanation
Indices: 18919840--18919892 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18919830 CCGGTCCGAT
18919840 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18919866 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18919892 C
1 C
18919893 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18922697 original size:4 final size:4
Alignment explanation
Indices: 18922688--18922717 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
18922678 GATGAAATGA
*
18922688 GCGG GCGG GCGG GCGG GCGG GCGG GTGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
18922718 ACTACGCAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.23, G:0.73, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:18923376 original size:26 final size:26
Alignment explanation
Indices: 18923347--18923399 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18923337 CTGGTCCGAT
*
18923347 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
18923373 CTTATACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18923399 C
1 C
18923400 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18926431 original size:878 final size:883
Alignment explanation
Indices: 18922481--18929971 Score: 8971
Period size: 878 Copynumber: 8.4 Consensus size: 883
18922471 ACAGTTCGAT
* * *
18922481 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGACCGTGCGGGCGCTCAGC
1 CTTAGACTGGG-A-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** **
18922546 CAGCCAGAGGGGCGGGATGCACAAGCCGAGCATCGGTCGGGTCCCCTTCTGTATGCTGTCGATCC
64 CGGCCAGAGGGGCGGGATGCACAAGCCG-GGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * **
18922611 TGCTACCACAACACTTGGTCCAGTCCAATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCA
128 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCA
* * * * *
18922675 ACCGATGAAATGAGCGGGCGGGCGGGCGGGCGGGCGGGTGGGCACTACGCAGGCCAGAGAGATGT
192 ACCGACG-AA--A---------CGAGCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGG
* * *
18922740 GATGCGCAAGCCGTGGCTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGGGTG
241 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
* *
18922805 CCAATGCCATTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCT
306 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
18922870 TGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCCAAACTTTGTACGGTTCGGGATTTTTTA
371 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTA
* *
18922935 AACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCA
436 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
18923000 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGT
501 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
18923065 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTGAAG
566 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAG
* *
18923129 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCA-C
630 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
18923193 AACTCGCACATCATGTGTGCACA----AC--CCCCCC-ATCATCGGAACCCCAATGCCGCCGGTC
695 CA-TCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
* * * *
18923251 AGGTTCT-C--CGACGATGGTACCCCGACGAAGAAAAATGCGACACCAGCACAAGCCCGAGCCCA
759 AGGTTCTCCAGCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * ** *
18923313 GCATGTGCT-ATCGCAACCATCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
824 GCATGTGCTGCTCG-AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
18923373 CTTATACTGGGAATGAATTTCGTATGCCTAAGTCAACTCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGG-A-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18923438 CGGCCAGAGGGGCGGGATGCACAAGCCGAGCATCAGTCC-GGTCCCCCTCTGCGTGCTACTGATG
64 CGGCCAGAGGGGCGGGATGCACAAGCCG-GGATC-GGCCGGGTCCCCCTCTGCGTGCTACCGATC
* * * ** *
18923502 TTGCTGCCACAACGCTCGGTCCGATCAAACCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
127 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* * * * * *
18923567 ACCGACAAAACGAGCGGGCGAGCAGGCACTATGCCGGCCAGAGAGACGGGATGAGCAAGCCATGG
192 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
18923632 ATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGCGCCAATGCCATTTTTAT
257 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* * *
18923697 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGCCAAGACGACTCAT
322 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** *** *
18923762 TTTCTATTTTTCACGATTTTTGAAAC-TTTCGGGGTTCGAGATTTTTTAAAAATTTTTT-GAAAG
387 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCGGAAG
* * * * * *
18923825 GAGTTTTTGCCCCAAGCTTGGTAGATGTGATCCTTGTATTTTTTTTGACATCCACAAAAAAATTC
451 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
18923890 AGCTGAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACAC
516 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
18923955 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCG
581 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
18924020 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCTTCACACATCATGTG
646 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
* *
18924085 CACACACTCCCCCGGCCCCCCTGATCGTCGGGACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
711 CGCACAC-CCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC----A-
* * * *
18924150 GCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGACACCAGCACCTGCCTGAGCCCAGCATGTG
769 G---CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
18924215 CTG-TCGTAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
831 CTGCTCG-AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
18924268 CTTAGACAAGGAATAAACTCCCTATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCGCTCAAC
1 CTTAGAC-TGGGA-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18924333 CGGCCAGAGGGGCGGGATGCAAAAGCTCGGGACCAGCCGGGTCCCACTCTGCATGCTGCCGATCC
64 CGGCCAGAGGGGCGGGATGCACAAGC-CGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
* *
18924398 TGCTGCCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
128 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * *
18924463 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCAGTACGCCGGCCAGAGAGATGCGACGCGCAA
193 CCGACGAAACGA--------GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
18924528 GCCGTGGATCGATAAGGTGGTAGGTCGGTTTAGGCACATCTTCAAATTTCTGTATGCCAACGCCA
250 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
*
18924593 TTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
315 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18924658 GACTCATTTTCTATTTTTTACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
380 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* ** * * * * * * *
18924723 CGAAAGGAGTTTTGTTCCCAAACTAGGTGGATGTGATCCTTGTATTTCTGTTGGCACGTATAAAA
445 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18924788 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
510 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18924853 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
575 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
18924918 TTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATACAAGGGCCAGGTACCAGCACCCATCACACAT
640 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* * * *
18924983 CATGTGCGCACACCCCCCGGCCCCCCAATCGTCGGAACCCTAATACCGCCGATCAGGTTCTCCGA
705 CATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--
* ** ** * *
18925048 CGATGCTCCGACGATGGTGCCCCGGGGAAGAAAAATATGGCAGCAACACATGCCCGAGCCCAGCA
767 C-A-G---CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
18925113 TGTGCTGC-CGCAACCCTCGGTCCAATCTGATCTTAGA-T-----TG------G---G
827 TGTGCTGCTCG-AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * * * *
18925155 ---A-A----G-GAACTCTATATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCGCTCAGTCA
1 CTTAGACTGGGAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
18925211 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCTTG
66 GCCAGAGGGGCGGGATGCACAAGCC-GGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTG
* * * ** ** *
18925276 CTGCCACAACCGTCAGTCTGGTCTGATCTTAGACTAAGAATGAACTCCATATGCCTAAGCCAACT
130 CTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
* * *
18925341 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGGCAGAGAGACGGGATGCGCAGGTCGTGGATC
195 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
*
18925406 GATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
260 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
* * *
18925471 TTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATGACTCGTTTT
325 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
18925536 CTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
390 CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
* * *
18925601 TCTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTAGCATGCACAAAAAAATTCAGCT
455 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
18925666 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
520 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* ** * *
18925731 ATGGCTACTGGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAAGGGAATGCGAGTTCTCGATGT
585 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
** * *
18925796 TCCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGTA
650 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
* ** * *
18925861 CACCCCCCGGCCCCCGGATCACCGGAACCCCAATACCGCCAGTCAGGTTCTCC-G-GG-GATGGT
715 CACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGGCGATGGT
* *
18925923 GCCCCGACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTACG-ACCCT
780 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-CGAACCCT
*
18925987 CGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATG
844 CGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18926027 CTTAGACT-GG-G-ACCCCGTATGCCTAAGTCAACCAATGAAACAAGCGTGCGGGCGCTCAGCCG
1 CTTAGACTGGGAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
18926089 GCCAGAGGGGCGGGATGCGCAAGCCGTGGATCAGCCAGGTCCCCCTCTACGTGCTACTGATCCTA
66 GCCAGAGGGGCGGGATGCACAAGCCG-GGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTG
* ** * * *
18926154 CTACCGTAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATC
130 CTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
* ** *
18926219 GACGAAATGAGCGGGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGTAAGCCGTGGATC
195 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* **
18926284 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATCAC
260 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
* * * *
18926349 TTGTAAATTCAGACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTTGTTTT
325 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * *
18926414 CTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTTTAAATTTTTTCAGAAGAAGT
390 CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
*
18926479 TTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
455 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
18926544 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
520 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* ** * *
18926609 ATGGCTACTGGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAAGGGAATGCGAGTTCTCGATGT
585 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
** *
18926674 TCCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGCA
650 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
* * * * ** *
18926739 CACCCCCCCGGCCCGCCGATCGCCAGAACCCCAATGCCACTAGTCAGGTTCTCCA--GG-GATCG
715 CA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGGCGATGG
* *
18926801 TGCCCC-AGCGAAGAAAAATGCAGCACCAGCACACGCCCGAGCCCAGCATGTGCTG-TCGCAACC
779 TGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTCG-AACC
*
18926864 CTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
842 CTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
18926906 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTGCGGGCGCTCAAT
1 CTTAGACTGGG-A-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18926971 CGGCCAGAAGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTCAGCGTACTACTGATCC
64 CGGCCAGAGGGGCGGGATGCACAAGCC-GGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** *
18927036 TACTGCCGTAACCCTCGGCCCGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCA
128 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCA
* * * * *
18927100 ACCAACGAAACGAGTGGGTGGGTGGGTGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCACA
192 ACCGACGAAACGA--------GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
18927165 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCATATCTTCATATTTCTACGTGCCAATGCC
249 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
* * *
18927230 ATTTTGATGGCTTGTACATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGA
314 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
18927295 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCG-GAATTTTTTAAAATTTT
379 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTT
* *** ** * *
18927359 TTCGAAAGGAGTTCCAGCCCCAAACTTCTTAGACGTGATCCTTGTATTTTTCTTAGCATGCAC-A
443 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
18927423 AAAAAGTCAGCTAAAAAGTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATT
508 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18927488 TCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTG
573 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
18927553 AGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAATGGCCAAGTACTAGCACCCATCGCAC
638 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
*
18927617 ATCATGTGCGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
703 ATCATGT--GCGCACACCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * ** * *
18927682 TCCGACGATGCTCCGGTGATGGTGCCCAGGGGAAGAAAAATGCGGCACCAGCACATGCCTGAGCA
765 T-C--C-A-G---CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * ** *
18927747 CAGCATGTGCTGC-CGTAACGCTTGGTCCGGTTTGATCTTAGACCGGGAATGAACTCCGTATG
822 CAGCATGTGCTGCTCG-AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
18927809 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACTGGG-A-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
18927874 CAGCCAGAGGGGCGGGATGCACAAGCCGTGGATCGGCCGGGTCCCCCTC-ACGTGCTACCGATCC
64 CGGCCAGAGGGGCGGGATGCACAAGCCG-GGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
* * ** * *
18927938 TGCTGTCACAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATTAACT-TCGTATGGCTAAGCCA
128 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCA
* *
18928002 ACC-ACCAAACGAGCAGGCGGGCGGGCAAGCGGGCACTACGCCGGCCAGAGAGACCGGATGCGCA
192 ACCGACGAAAC--G-A-GCGGGC-GG---GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * * **
18928066 AGCCGTGGATCGATAAGATAGTTGGTGGGTTTAGGCACATCTTCATATTGCTGCATGCCAATGCC
249 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
*
18928131 ATTTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
314 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
18928196 CGACTCATTTTCTATTTTTCATGGTTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
379 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * *
18928261 TCGGAAGGAG-TTCGACCCCAAACTTGTTAGACGTGATCCTTGTATTTTTCTTAGCATGCAC-AA
444 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
18928324 AAAATTCAGCTAAAAACTCAAACTGCACTAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
509 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18928389 CAGACACTTTAATGGCTATTGGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGA
574 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18928453 GTTCTCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCACACA
639 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * *
18928518 TCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGTTTCTC
704 TCATGTGCGCACACCCCC-CGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-
* **
18928583 CGACAATGCTCCGGCGATGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
766 C--C-A-G---CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * ** *
18928648 ACATGTGCTAC-CGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTGTGTGTG
824 GCATGTGCTGCTCG-AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18928708 CTTATACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGTTCAGC
1 CTTAGACTGGG-A-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * *
18928773 CTGCCAGAGGGGCGGGATGCACAGGCCAGGGATCGGCTGGGTCCCCTTCTGTATGGTGCCGATCG
64 CGGCCAGAGGGGCGGGATGCACAAGCC-GGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
*** * * *
18928838 TGCTGCTGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAGCCAA
128 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * *
18928903 CCGACGAAATGAGCGTGCGGGCGGGCAGGCGGGTACTACGCTGGCCAAAGAGACGGGATGCGCAA
193 CCGACG-AA--A-CGAGCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * **
18928968 GCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
250 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
* * *
18929033 TTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGAC
315 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * *
18929098 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTT
380 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
*
18929163 CGGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAGAAA
445 CGG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18929228 ACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTT
509 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18929293 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
574 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18929358 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-TCAGCACCCATCACGCA
639 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * * * * *
18929422 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCCGAACCCTAATGTCGGCGATCAGGTTCTCC
704 TCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * *
18929487 GGTAATGCACTGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCCAGCCCAG
768 ----A-G--C-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
18929552 CATGTGCTG-TCGCAACCCTTGGTCCAATCCGATCTT--AC---------A----GTA-G
825 CATGTGCTGCTCG-AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18929595 ----GAAT----GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGTGCGCTCAGTCG
1 CTTAGACTGGGAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * * * *
18929652 GCCA-AGGGGGTGGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATCCTGCCGATCTT
66 GCCAGA-GGGGCGGGATGCACAAGCC-GGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCT
** * ** *
18929716 GCTGCCGTAACCCTCTGTCCGGTCCAATCTTAGACTGGGAAAGAACT-TCGTATGCCTAAGCCAA
129 GCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAA
* *
18929780 CCGACGAAACGAGCGAGCGGGCGAGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAA
193 CCGACG-AA--A-CGAGCGGGC--G-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
18929845 GCCGTGGATCGATATGGTTGTAGGTGGGTTTATGCACATCTTCATATTTATATGTGCCAATGCCA
250 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
**
18929910 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAA
315 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
18929972 TATTTTGGGA
Statistics
Matches: 5786, Mismatches: 672, Indels: 297
0.86 0.10 0.04
Matches are distributed among these distances:
857 75 0.01
858 2 0.00
859 2 0.00
862 1 0.00
863 2 0.00
865 1 0.00
867 1 0.00
868 505 0.09
869 1 0.00
872 1 0.00
875 264 0.05
876 357 0.06
877 324 0.06
878 640 0.11
879 154 0.03
880 14 0.00
882 6 0.00
883 5 0.00
884 203 0.04
885 2 0.00
887 2 0.00
888 2 0.00
889 1 0.00
890 43 0.01
891 155 0.03
892 479 0.08
893 4 0.00
894 2 0.00
895 270 0.05
896 7 0.00
897 5 0.00
898 14 0.00
899 301 0.05
900 245 0.04
901 448 0.08
902 199 0.03
903 577 0.10
904 395 0.07
905 77 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (883 bp):
CTTAGACTGGGAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCACAAGCCGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGC
TGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
ACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGGCGATGGTG
CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTCGAACCCTCG
GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18926916 original size:26 final size:26
Alignment explanation
Indices: 18926880--18926932 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18926870 CCAGTCTGAT
18926880 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18926906 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18926932 C
1 C
18926933 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.