Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 107 of 195
Found at i:18927812 original size:26 final size:26
Alignment explanation
Indices: 18927783--18927835 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18927773 CCGGTTTGAT
18927783 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
18927809 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
18927835 C
1 C
18927836 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:18930329 original size:26 final size:26
Alignment explanation
Indices: 18930290--18930342 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18930280 TCGGTCTGAT
* *
18930290 CTTAGGCTAAGAATGGACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
* *
18930316 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
18930342 C
1 C
18930343 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:18931222 original size:26 final size:26
Alignment explanation
Indices: 18931193--18931245 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18931183 CCGGTTCGAT
*
18931193 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
18931219 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18931245 C
1 C
18931246 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18932112 original size:26 final size:26
Alignment explanation
Indices: 18932083--18932135 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18932073 TCAGTCCGAT
18932083 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18932109 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18932135 C
1 C
18932136 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18935628 original size:26 final size:26
Alignment explanation
Indices: 18935592--18935644 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18935582 CTAGTCTGAT
*
18935592 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18935618 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18935644 C
1 C
18935645 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18935966 original size:901 final size:900
Alignment explanation
Indices: 18932186--18945780 Score: 14861
Period size: 901 Copynumber: 15.3 Consensus size: 900
18932176 GGGATCGGTC
* * * * * *
18932186 GGGTCCTCCTCTACGTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCT-GATCTTAGATT
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTCGATCTTAGACT
* * * * *
18932250 GGTAATGATCTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGAGGGCGAGTGGGCGGGCACT
66 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GGGCGGGCGGGCGGGCACT
* * * * * * *
18932315 ACGTCAGCTAGAGAGACGGGTTACGCAAGCCGCGAATCGATAGGGTGGTAGGTGGGTTTAGGCAC
128 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
18932380 ATCTTCATATTGCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
193 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
**
18932445 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTCCAAATCTTT
258 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTT
* * **
18932509 TTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCC-AACTTGGTAGACGTGA
322 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
18932573 TCCTTGTATATTTGTTGGCATGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTG
387 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
18932638 TGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAA
452 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
18932703 ATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATATGGGGCCAATATA
517 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
18932767 AGGGCCTAGTACCAGCACCCATCGCACATCATGTGCGTACACTCCCCTCGGCCTCCCCGATCGTC
582 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC-CGACC-CCCCGATCGTC
* * * * * **
18932832 GGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGACGAAGAAA
644 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAA
** * * * * * * *
18932897 AATATGGCACCAGCACATGTCTGAGTCTAGCATGTGTTGTCGTAACCCTCGGTCTGGT-TCGATC
709 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT-GATC
* * ** *
18932961 TTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTATGTCAACCCA
773 TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
18933026 CGAAACGA---T-----CG-T-------TCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACC
838 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACT
* * * ** * * * *
18933073 GGGTCCCCCACTACGTGCTACCGATCCTGCTATCGTAGCCCTCAGT-TCAGT-TTGATCTTAGAC
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCT-GGTCTCGATCTTAGAC
* * * * *
18933136 CGGGAATGAACTCCGTATGCCTATGCCAACCGACGAAACGAGC-GGACGGGCGGGCGGG-GCTAT
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTAC
* * * * *
18933199 ACCGGCTAGAGAGACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACAT
130 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
18933264 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATAAAATGGTCCCTTAAGC
195 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * *
18933329 CATCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCATGATTTTTGAAACTTTTTG
260 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * * *
18933394 CGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAAGTTGGTAGATGTGATCC
325 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
18933459 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTATAAGATTTTGTGA
390 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
18933524 CCATTTGAGAAAAA-TGTCCCTATTTCAGACACTTTAACGGCTACTGACAGCAAACCTGTAAAAT
455 CCATTTGA-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
18933588 CTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAG
519 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
18933653 GGCCAAGTACCAGCCCCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGA
584 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGA-CCCCCCGATCGTCGGA
* ** * **
18933718 ACCCCAAT---GTC-G-CCGG---TCAAGT--T-CTCCGGCGATGGTGCACCGGCAAAGAAAAAT
647 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAAT
* * * *
18933772 GCGGCACCGGCACAAGCCCCAGCCCAGCATGTGCTGTCC-CAA--C-C-ATC--G---G-TC---
712 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CCGCAACCCTCGGTCTGGTCTGATCTTA
*
18933823 --C--GG--T---C--C-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
776 GACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * * *
18933875 AATGAGCATGCGGGCGCTCAACCGGCCAGGGGGGCGGGATGTGTAAGTCGGGGATCAACC
841 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACT
* * * * * *
18933935 GGGTCCCTCTTTGTGTCCTGTCGATCCTGCTGCCGCAACCCTCGGT-TCGGTCT-GATCTTAGAC
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCT-GGTCTCGATCTTAGAC
* *
18933998 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGGCGGACGGGCGGGCACTAT
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTAC
*
18934062 GCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
130 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
18934127 CTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
195 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
18934192 CTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTA
260 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
18934257 CGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTCG-CCCAAACATGGTAGATGTGATCC
325 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * * *
18934321 CTGTATTTTTGTTGGCATGCATAAAAAAAGTCAGCTAAAAACACGAAGGGTACAAGATTTTGTGA
390 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
** * * *
18934386 CCATTTGAAAAAAGTGTCTGCATTTTAGACACTTGAATGGCTACTGGCACCAAACCTGTAAAATC
455 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
18934451 TCAAATGCTCTTTACGGGGGTGTGAGTACTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
520 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * * *
18934516 GCCAAGTACCAGCA--CATTGGCAAATCACGTCCACACACCCCGTCCGGCCCCCCCGATCGTCGG
585 GCCAAGTACCAGCACCCA-TCGCACATCATGTGCGCACACCCC--CC-GACCCCCCGATCGTCGG
* ** * * * **
18934579 AACCCCAATGCTGTCTCTCAGGTTCTCCGGTGATCCTTCGGCGATGGTACCCCGACGAAGAAAAA
646 AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAA
* * * * * *
18934644 TTCGTCACCAGCACATGCCCGATCCCAGCATGTGCTACCACAA----C-G-C---TC-GGTC---
711 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
18934696 --C---G-AT---C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
776 GACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * ** * **
18934748 AACAAGCGTGCGGGGGTTTAACCGATCAGAAGGGCGTCATGCGCAAGCTGAGGATGC-CTAAGTC
841 AACGAGCGTGC--GGG------CGCTCAG-CCGGC--CA-GAG-GGGC-G-GGATGCGC-AAGTC
18934812 GGGGATCGACT
890 GGGGATCGACT
* * * * * * * * *
18934823 GGGTCCCCCTCTACTTGCTGCCAATGCTGCTGTCGCAACCCTCAGT-TCAGTC-CAATCTTAGAC
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCT-GGTCTCGATCTTAGAC
* * * * *
18934886 TGGGAGTGAACTCCGTATGCCTAAGCCAATCGACAAAACGAGC-GGGCGGACGGGTGGGCACTAC
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTAC
* *
18934950 GCTGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
130 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
18935015 CTTCTTATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTCAAG
195 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AAG
*
18935079 CTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
259 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * *
18935144 ACGGTTCAAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGTCCCAAACATGGTAGACGTGATC
324 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
18935209 CTTGTATTTTTGTCGGCATGCACAAAAAAAGTCAGCTAAAAACACGAAGTGTTCAAGATTTTGTG
389 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
18935274 ACCATTTGAAAAAAGTGTCCGCATTTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAA
454 ACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
18935339 TCTCAAATGCTCTTTATGGGGGTGTGAGTACTCGAGGTTTGATGAGGGATAGGGGCCCAATATAA
518 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
18935404 GGGCCAAGTACCAGCACCCATGGCAAATCATGTGCGCACACCCCCC-ACCCCCCGATCGTCGGAA
583 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAA
* * ** * *
18935468 CCCCAATACCGTCGGTCAGGTTCTTCGGTGATGCTCCGATGATGGTACCCCGGTGAAGAAAAATT
648 CCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATG
* * * * * *
18935533 TGGCACCAGCACTTGCTCGAGCCCAACATGTGCTACCGCAACCCTCGGTCTAGTCTGATCTTAGA
713 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGA
* *
18935598 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAA
778 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
** * * * * *
18935663 CGAGCGTGTTGGCGCTCAACCAGCCAAAGGGGCAGGATGCGCAAGTCAGGGATCGACT
843 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACT
* * * * * ** *
18935721 GAGTCCCCCTCTGCGTGCTGCCGACCCTGCTACCATAACTCTCAATCTGATCTC-ATCTTAGACT
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTCGATCTTAGACT
* * *
18935785 AGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGTGGGCGGGCAGGCGGGCACTA
66 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G-GGGCGGGCGGGCGGGCACTA
* * *
18935850 CGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACA
129 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
18935915 TCTTCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTCAA
194 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AA
*
18935979 GCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
258 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * *
18936044 TACGGTTC-AGGATTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCCGAACTTGGTAGACATGA
323 TACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
18936108 TCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAGAAACTTGAAGTGTACAGGATTTTG
387 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
18936173 TGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTACTGGCAGTAAACCTGTAAA
452 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
18936238 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATA
517 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* ** * * * *
18936303 AGGGCCAAGTACCAGCACCTATCGCACATCATGCACACAAAGCCCCCCGACCCCCCGATTGCCGG
582 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCGATCGTCGG
* *
18936368 -ACCCCAATGCCGCCGGTAAGGTTCTCC---G--G-T-----GATGGTGCCCCGGTGAAGAAAAA
646 AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAA
* * * * * **
18936421 TGCGGCACC-GCACATGCCCGAACCTAGCATGTGCTGCCGCAAACCTCGATCCGGTCCAATCTTA
711 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
* * * * ** *
18936485 GACTGAGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCATATG-CTTAG---A--CTGGG
776 GACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *** * ** ** * **** * * *
18936544 AATGAAC-T-CTGTATGCTTAGATTGGGAATAAACTCCGTATGCGTAAGTCAACCCACGGAAGGA
841 AACGAGCGTGC-GGGCGCTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGT-------CGG--GGA
*
18936607 GCG-C-
895 TCGACT
* * * * ** ** ** * * * * **
18936611 GCGG--GCACTCAGCAG-GCCAGAGGGGCGAGATG-AGAAAGCCAGGGATCAATCAGGTCCCCCT
1 G-GGTCCCCCTCTGC-GTG-CTGCCGATCCTGCTGCCGTAACCCTCGG-TC--T--GGT----CT
* * * * ** *
18936672 CTGCATGCTGTCGATTCTGCTG-CTGCAAC-CC-TCA-GTCC--GGTCCAATTTTAGACTGGGAA
54 C-G-AT-CT-TAGA--CTG-GGAATG-AACTCCGT-ATG-CCTAAG-CCAA---CCGAC--GAAA
* * ** *** * * * *** * * * * *
18936731 TGAACTCAGTATGCCTAAGCCAACCGATTAAACGAGCGGGCAG-GCAGAC-GGATGGGCACTACA
103 CGAGC-GGGGCGGGC--GGGCGGGC-ACT--ACG-CCGGCCAGAG-AGACGGGATGCGCA--A-G
* ** * * **
18936794 CCGGCTAGAGAGACAGGATACGCAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATC
157 CC-G-TGGATCGATAGGGT--GGTAG--GT--------------------GGGTTTAGGCACATC
**
18936859 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
196 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
**
18936924 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAC
261 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* *
18936989 GGTTCGAGATTTTTTAAAATTTTTACGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCAT
326 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
18937054 TGTTTTTTTGTTGGCATGCACAAAAAAAGTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGGC
391 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
18937119 AATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
456 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
18937184 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
521 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
18937249 CCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTTGATCGTCGGAAC
586 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCC-CGATCGTCGGAAC
* * * * *** * *
18937314 CCTAATGCCGACGATCAAGTTCTCCCACGATGCTCCAGCGATGGTGCCCCGGTGAAGAAAAATGT
649 CCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGC
* * * *
18937379 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCGAT-TCGGTCCGATCTTAGA
714 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGA
* * *
18937443 CTGGGAATGAACTCCGTATGCTTAGACT-AGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
778 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
*
18937507 CGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGA-T
843 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACT
* * * * * *
18937564 CAGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGTAACCTTCGGTCCGATC-CGATCTTAGAC
1 -GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTCGATCTTAGAC
* * * * *
18937628 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG-TGGGCGGGTGGGCAGGCACTAT
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTAC
* * ** * * * *
18937692 GCCGGCCAAAAAGATAGGACGTGCAAGCCGTGGATCTATAGGGTGGTAGGTGGGTTTAGACACAT
130 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* ** * *
18937757 CTTCCTATTTCTATGTGCCAAAGCCATTTTTGTGGCTTGTAAATTCATACAATGGT-CCTTGAAG
195 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AAG
*
18937821 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCAC------T---A---TTT
259 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* *
18937874 ----TT----A------AAACTTTTTT-GGAAGGAGTTTTGGCCTCAAACTTGGT----G-GA--
324 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
18937917 C--GTA------ATGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTG
389 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * * *
18937974 ACCATTAGAAAAAAGTGTCCCTATTTCAAACAATTTAATGGCTACTGGCAGTAAACCTGTAAAAT
454 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * * *
18938039 CTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCCAGGCTTGATGAGGGAAAAGGGGCCAATATAAG
519 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
18938104 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCTGATCGTCGGA
584 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCC-GATCGTCGGA
* ** * * * * *
18938169 ACCCTAATGCCACCGATCAAGTTCTCCAGCGATGCTCCAGCGATGGTGCCCCGGTGAAGAAAAAA
647 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAG-AAAAA
* * * * * * *
18938234 TGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGTAACCATCAGTTTGGTTTGATCTTA
711 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
* * * *
18938299 GACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCTGTATACCTAAGTCAACCCATGA
776 GACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * *
18938363 AATGAGCGTACGGGTGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACC
841 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACT
* * *
18938423 GGGTTCCCCCTCTGCGTGCTGCCAATCCTGCTGTCGTAACCCTCGGTCCGGTC-CGATCTTAGAC
1 GGG-TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTCGATCTTAGAC
* * * *
18938487 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG-TGGGCGGGTGGGCAGGCACTAC
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTAC
* * * *
18938551 ACCGGCCAAAAAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
130 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* ** *
18938616 CTTCCTATTTCTATGTGCCAATGCCATTTTT-GGGACTTGTAAATTCATACAATGGTCCCTTAAG
195 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGG-CTTGTAAATTCATACAATGGTCCCTTAAG
* **
18938680 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTCAAAACTTTTT
259 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
18938745 A-----CG-G--------------TTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
324 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
18938789 CCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTG
389 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * * *
18938854 ATCGTTTGAAAAAAGTGTCCCCATTTCGGACACTTTAAAGGCTACTGGCAGCAAACCTATAAAAT
454 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
18938919 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGTGATAGGGGGACAATATAAG
519 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
18938984 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAA
584 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCCGATCGTCGGAA
* * *
18939049 CCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGTGATGGTGCTCCGGTGAAGAAAAATG
648 CCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATG
* * *
18939114 CGGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCACAA-CC-C--T-T-G---G-TC-----
713 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGA
*
18939164 C----AAT---C-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAA
778 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
** * * * ** * *
18939218 CGAGCGTGTAGGTGCTTAGTCGGCCAGAGGGGCTAGATGCACAAGCCGGGGATC-AGCT
843 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGA-CT
* * * * * * * * * * *
18939276 GGGTCCCCCTCTACATGTTACCGATCTTGCTGTCGCAACACTCAGTCTAGTC-CGATCTTAGATT
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTCGATCTTAGACT
* * *
18939340 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGGTGGGCAGGCACTA
66 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-GGCGGGCGGGCGGGCACTA
* * * * *
18939405 CGCCGGCTAGAGATACAGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCATA
129 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
18939470 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
194 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
18939535 CCTTCACGTGAAGTTTCATGGAAAGACTACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTT
259 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * ** * * *
18939600 ACGGTTCGGGAATTTTTACGATTTTTACAGAA-GATGTTTTAGCCCCAAACTTGGTAGACGTGAT
324 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
18939664 CCTTGTATTTTTTTTGGCATGCACAAAAAAACTTCAGCAAAAAACTTGAAGTGTACAAGATTTTG
388 CCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * * *
18939729 TGACC-TTTGAACAAAGTGTCCCCACTTAAGACACTTTAATGGCTACTGACAGCAAACCTATAAA
452 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
18939793 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
517 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
18939858 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATTGTCGA
582 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA-CCCCCCGATCGTCGG
* * * **
18939923 AACCCCAATGCTGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
646 AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAA
* ** * * *
18939988 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAACCTTCGATCTGGTCTGATCTTC
711 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
* * * * *
18940053 GATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAATTCAAACCACGA
776 GACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
18940118 AACGAGCGTACGGGCGCTCAGCTGGCCAGAGGGG-GGGATGCGCAAGTCGGGGATC-AAT
841 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACT
* * * * *
18940176 CGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGTCATAACCCTCAGTCTGGTCT-GATCTTAGAC
1 -GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTCGATCTTAGAC
* * * *
18940240 TGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAACGATC-GGGCGGGCGGGCAGACACTAC
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTAC
* * * *
18940304 ACCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGTACAT
130 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
18940369 CTTCATAATTT-TGTGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
195 CTTCAT-ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
18940433 CCTTCACGTGATA-TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
259 CCTTCACGTGA-AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
** *
18940497 TGTGGTTCGAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGA
323 TACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
18940562 TCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTG
387 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
18940627 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
452 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
18940692 ATCTCAATTGCACTTTAAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
517 ATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
18940757 AAGGGCCAAGTATCAGCACCCATCGCACATCGTGTGCGCATAGCCCCCCCCGGCCCCCCCGATCG
581 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--A-CACCCCCC-GACCCCCCGATCG
* * * * * * ** * * **
18940822 CCGAAACCACAATACCGCCAGTCAGGTTCTCCGACGATGCTCTGGTGATGGTGCCCCGACGAAGA
642 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGA
* * * * *
18940887 AAAATGCTGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCATCGGTCTGGTCCGAT
707 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * *
18940952 CTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAGCCC
772 CTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
18941017 ATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAAGGGTGGGATGCGCAAG-CTAGGGATTGACC
837 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGACT
* * * * *
18941081 GGGTCCCCCTCTACGTGTTGTCGATCCTGCTACCGCT-ACCCTCGGTCTGGTCT-GATCTTAGAT
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG-TAACCCTCGGTCTGGTCTCGATCTTAGAC
* * *
18941144 TGGCAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGTGGGCGGTGGGCGGGCGGGTGGG
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC----GAGC-----G-GGGC----GGG
* * *
18941209 CGGGCGGGCACTACGCAGACCAGAGAGAGGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
116 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
18941274 GGGTTTAGGAACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
181 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
18941339 A-GGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
246 ATGG-TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
18941403 TTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACT
310 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
18941468 TGGTAGACATGATCCTTGTA-TTTTGTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
375 TGGTAGACGTGATCCTTGTATTTTTG-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * * **
18941532 GTACATGATTTTGTGATCGTTTGAAAAAAGTGTCGCCATTTCAGACACTTTAAAAGCTACTGGCA
439 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
18941597 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGGTGAGTGATA
504 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
18941662 GGGGGACAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCCCGACC
569 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGA-C
* * * * * **
18941727 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCTGGCGATGGTGGT
632 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCC
**
18941792 CCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAATATGTGCTGCCGCAA-CC-C--T
697 CCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
18941853 -TGGTC----C----A----G--T---C--CG-AT-CTTAGACTGGGAATGAACTTCGTATGCCT
762 CTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * * * * *
18941896 AAGTCAGCCCACGAAACGAGTGCGCGGGTGCTCAGTCGGTCAAAGGGGCTGGATGCACAAGCCAG
827 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGG
* **
18941961 GGACCGGTT
892 GGATCGACT
* * * *
18941970 GGGTCCCCCTCTGCATGCTGCCGATCTTGCTGCCGTAACACTCGGTCTGGT-TCGATCTTAGATT
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTCGATCTTAGACT
* * * *
18942034 AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGAGGGGCGGGCAGGCACTA
66 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-G-CGGGCGGGCGGGCACTA
* * * * * *
18942099 CGTCGGCTAGAGATACGGGATGCGCAAGCCGTGGATTGATAGGGGGGTAGGTGGGTTCAGGCACA
129 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
18942164 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
194 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
18942229 CCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTTTAAACTTTTT
259 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * *
18942294 ATGGTTCGAGAATTTTTAAGATTTTTTCAGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATC
324 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
18942359 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACAT-GAAGTGTACAAGATTTTGT
389 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGT
* *
18942423 GACCATTTGAACAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
453 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
18942488 TCTCAAAAGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
518 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
18942553 GGGCCAAGTACCAGCACCCATCTCACATCATTTGCGCACACCCCCCGGCCCCCCCGATCGTCGAA
583 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCCGATCGTCGGA
** * * * * * **
18942618 ACCCCAACACCGTGGGTCAGGTACTCCAGTGATGCTCCGGTGATGGTGCCCTGACGAAG-AAAAT
647 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAAT
* ** * *
18942682 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTTGCAACCCTTGGTCTGCTCTGATCTTAG
712 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAG
* * *
18942747 ACTGGGAATGAACTTCGTATGCTTAGACTGGAAATGAACACCGTATGCCTAATTCAACCCACGAA
777 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * **
18942812 ACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGTT
842 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACT
* * * ** * *
18942871 GGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTTGGT-TCGGTCT-GATCTTAGAT
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCT-GGTCTCGATCTTAGAC
* * * **
18942934 TGGGAATGAACTCCATATGCCTAAGCCGACCAACGAAACGAGCAGGCGGGCGGGCGGGCGAACAC
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GGGCGGGCGGGCGGGCAC
* * * *
18942999 TACACCGGTC-GAGAGACGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTA
127 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* ** *
18943063 CATCTTCATAATTCTGCGTGGAAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCTTA
192 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
18943128 AGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
257 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
*
18943193 TTACGGTTC-AGGAATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
322 TTACGGTTCGA-G-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
18943257 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAGATTT
385 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
18943322 TGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGCA
450 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
18943387 AAATCTC-AATCGCTCTTTAAGGGTGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
515 AAATCTCAAAT-GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
18943451 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAGT-G
579 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCCGA-TCG
* * * ** * *
18943515 TCGAAACCACAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCC-G-GAAAA
642 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGA
*** * ** ***
18943578 AAAATGTTACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCCATCCAATCTGAT
707 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * *
18943643 CTTAGATTGGGAATCAAC-TCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
772 CTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* ** * * * * *
18943707 CACGAAACGAGAGTGCGGGTACTCAGTCGGCCAAAGGGGTGGGATGCGCAAGCCGGGGATCGGCC
836 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC-GAC
*
18943772 A
900 T
* * * * **
18943773 GGG-CCCCCTCTGCGTGCTGCCGATCCTACTGCTGCAACCCTCAGTCCAGT-TCGATCTTAGACT
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTCGATCTTAGACT
* * *
18943836 GGTAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC-GGACGGGCGGGCGGGCACTACG
66 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACG
* * *
18943900 CACGG-CAGAGAGAGGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACAT
131 C-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* **
18943964 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTCTCCCTTAAGC
195 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* **
18944029 CTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA
260 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
18944094 CGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCC-AACTTGGTAGATGTGATCC
325 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
18944158 TTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAGGTGTACAAAGATTTTGTG
390 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC-AAGATTTTGTG
*
18944223 ACCATTTGAAAAAAGTGT-CCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAAT
454 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
18944287 CTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
519 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
18944352 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCGCCCCGATCGTCGAA
584 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACC-CCCCGATCGTCGGA
** * * * * * *
18944417 ACTGCAATGCCATCGGTCAGGTTCTCCGGTGATGATCTGGCGATGGCGCCCAGATGAAGAAAAAT
647 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAAT
* * * ** *
18944482 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTTGGTCCAGCCTGATCTTAG
712 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAG
*
18944547 ACTGGGAATGAAC-TCTGTATGCTTAGACTGGGAATGAACTCCGTATGGCCCTAAGTCAACACAT
777 ACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTAT-G-CCTAAGTCAACCCA-
* ** * * * * *
18944611 GGAAACCGAGCGAACGGGTGCTCAACCGGCCAGA-GGGCGGGGATGCACAAG-CCGGGATC-AGT
838 CGAAA-CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAAGTCGGGGATCGACT
* * ** * * * * *
18944673 CGGTTCCCCTCTATGTGCTGTCGATCCTGCTGCCATAACCCTTGGTCTGATCT-AATCTTAGACT
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTCGATCTTAGACT
* * *
18944737 AGGAATGAACTCCATATGCCTAAGCCAACTGACGAAACGA-----GC-GGCGGGCGGGCACTACG
66 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACG
* * *
18944796 TC-GTCAGAGAG-C-GGATGCGCAAGCCGTGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACATC
131 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * *
18944858 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAATCTTGCAATGGTCCCTTAAGCC
196 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
18944923 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAAACTTTTTA
261 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTA
* * *
18944988 CGGTTCGGGA-TTTTTAAAATTTTTTCGAAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
325 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
18945052 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGA
390 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
18945117 CCATTTGAAAAAAGTGTCCCCATTTCAGATATTTTAATAGCTACTGGCAGCAAAGCTGTAAAATC
455 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
18945182 TCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGG
520 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * * * *
18945245 GCCAAGTACCAGCACCCATCACACATTATGTGCGCAC-CCCTGCGGCCCCCCCCGATCATCAGAA
585 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCG-ACCCCCCGATCGTCGGAA
* *
18945309 CCCCAATGCCGCCGGTCAGG-T-T-C-----T-CT--GGCGATGG-GCCCCGATGAAGAAAAATG
648 CCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATG
* * * * ** * *
18945362 TGACACCAGCACTTGCCCGAGCCAAGCATGTGCTATCG-TATCC-C--T-T-G---G----T--A
713 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGA
* * *
18945412 C---G-AT---C-T-G-AT-ATTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
778 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * **
18945466 CGAGCGTACGGGTGCTCAATCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACT
843 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACT
* * ** * *
18945524 GGGTCCCTCTCTGCGAGCTGCCGATCCTGCTATCGTAACCCTCGATCCGGTCT-GATCTTAGACT
1 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTCGATCTTAGACT
* * * *
18945588 GGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGGTGGGCTGGG-AGGCAC
66 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG--GGCGGGC-GGGCGGGCAC
* * * *
18945652 TACGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGCGTTTAGGCA
127 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
18945717 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGATCCCTT
192 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
18945781 TGAAAAAAGT
Statistics
Matches: 10889, Mismatches: 1375, Indels: 912
0.83 0.10 0.07
Matches are distributed among these distances:
846 44 0.00
847 2 0.00
848 1 0.00
849 38 0.00
850 16 0.00
851 99 0.01
852 99 0.01
853 106 0.01
854 6 0.00
855 196 0.02
856 3 0.00
857 286 0.03
858 177 0.02
859 284 0.03
860 28 0.00
861 33 0.00
862 359 0.03
863 326 0.03
864 2 0.00
865 32 0.00
866 2 0.00
867 5 0.00
868 6 0.00
869 3 0.00
870 8 0.00
871 4 0.00
872 88 0.01
873 129 0.01
874 4 0.00
875 54 0.00
876 397 0.04
877 499 0.05
878 58 0.01
879 119 0.01
880 224 0.02
881 6 0.00
882 223 0.02
883 211 0.02
884 97 0.01
885 8 0.00
886 6 0.00
887 202 0.02
888 356 0.03
889 373 0.03
890 164 0.02
891 56 0.01
892 62 0.01
893 250 0.02
894 148 0.01
895 12 0.00
896 232 0.02
897 148 0.01
898 525 0.05
899 373 0.03
900 238 0.02
901 1174 0.11
902 453 0.04
903 260 0.02
904 119 0.01
905 17 0.00
906 7 0.00
907 2 0.00
908 5 0.00
909 7 0.00
910 9 0.00
911 7 0.00
912 2 0.00
913 62 0.01
914 13 0.00
915 119 0.01
916 2 0.00
917 85 0.01
918 194 0.02
919 201 0.02
920 3 0.00
921 3 0.00
922 2 0.00
923 8 0.00
924 1 0.00
925 2 0.00
926 1 0.00
927 8 0.00
928 9 0.00
930 2 0.00
931 4 0.00
933 2 0.00
935 5 0.00
937 2 0.00
938 4 0.00
939 10 0.00
940 6 0.00
941 4 0.00
942 417 0.04
943 14 0.00
944 23 0.00
945 1 0.00
946 1 0.00
947 1 0.00
949 1 0.00
950 3 0.00
952 5 0.00
953 2 0.00
954 11 0.00
955 59 0.01
956 79 0.01
959 1 0.00
961 22 0.00
962 7 0.00
963 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACG
CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCC
CAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGG
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACT
Found at i:18936520 original size:26 final size:26
Alignment explanation
Indices: 18936481--18936585 Score: 156
Period size: 26 Copynumber: 4.0 Consensus size: 26
18936471 CCGGTCCAAT
* *
18936481 CTTAGACTGAGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18936507 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18936533 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18936559 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18936585 C
1 C
18936586 GTAAGTCAAC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18937479 original size:25 final size:26
Alignment explanation
Indices: 18937437--18937488 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
18937427 TCGGTCCGAT
*
18937437 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18937463 CTTAGACT-AGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18937488 C
1 C
18937489 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18938338 original size:25 final size:26
Alignment explanation
Indices: 18938295--18938344 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
18938285 TTGGTTTGAT
18938295 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18938321 CTTAGACT-GGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18938345 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18940981 original size:26 final size:26
Alignment explanation
Indices: 18940952--18941004 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18940942 CTGGTCCGAT
* *
18940952 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18940978 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18941004 C
1 C
18941005 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18941208 original size:12 final size:12
Alignment explanation
Indices: 18941187--18941216 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
18941177 CGAAACAAGT
18941187 GGGC-GGTGGGC
1 GGGCGGGTGGGC
18941198 GGGCGGGTGGGC
1 GGGCGGGTGGGC
18941210 GGGCGGG
1 GGGCGGG
18941217 CACTACGCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.00, C:0.17, G:0.77, T:0.07
Consensus pattern (12 bp):
GGGCGGGTGGGC
Found at i:18942782 original size:26 final size:26
Alignment explanation
Indices: 18942742--18942794 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18942732 CTGCTCTGAT
* **
18942742 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACACCGTATG
18942768 CTTAGACTGGAAATGAACACCGTATG
1 CTTAGACTGGAAATGAACACCGTATG
18942794 C
1 C
18942795 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACACCGTATG
Found at i:18943672 original size:26 final size:26
Alignment explanation
Indices: 18943643--18943695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18943633 CCAATCTGAT
*
18943643 CTTAGATTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
*
18943669 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
18943695 C
1 C
18943696 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCTGTATG
Found at i:18944578 original size:26 final size:26
Alignment explanation
Indices: 18944542--18944593 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18944532 CCAGCCTGAT
*
18944542 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18944568 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18944594 GCCCTAAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18945828 original size:26 final size:26
Alignment explanation
Indices: 18945799--18945849 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18945789 GTGTACATCA
18945799 TAGACTCGGAATGAACTCAGTATGCT
1 TAGACTCGGAATGAACTCAGTATGCT
* *
18945825 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTCGGAATGAACTCAGTATGC
18945850 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTCGGAATGAACTCAGTATGCT
Found at i:18946747 original size:26 final size:26
Alignment explanation
Indices: 18946711--18946763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18946701 CCGGTCTGAT
*
18946711 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18946737 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18946763 C
1 C
18946764 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18947638 original size:26 final size:26
Alignment explanation
Indices: 18947609--18947658 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18947599 TCGATCCGAT
*
18947609 CTTAGGACTGGAATGAAGCTCCGTTG
1 CTTAGGACTGGAATGAAACTCCGTTG
18947635 CTTAGGACTGGAATGAAACTCCGT
1 CTTAGGACTGGAATGAAACTCCGT
18947659 ATGCCTAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGGACTGGAATGAAACTCCGTTG
Found at i:18948541 original size:26 final size:26
Alignment explanation
Indices: 18948512--18948561 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
18948502 CTGGTCCGAT
18948512 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18948538 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18948562 AGCCTAACTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18949447 original size:26 final size:26
Alignment explanation
Indices: 18949411--18949460 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18949401 CGCGTCCAAT
* *
18949411 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18949437 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18949461 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18949766 original size:900 final size:898
Alignment explanation
Indices: 18945799--18952541 Score: 8521
Period size: 900 Copynumber: 7.5 Consensus size: 898
18945789 GTGTACATCA
* * * *
18945799 TAGACTCGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
18945864 GAAACGAGCTTGCGGGTGCTCAAT-CGGCCAGAGGGGCGAGATGCGCAAGCCCGGGATCGGTCGG
66 GAAACGAGCGTGCGGGCGCTC-ATCCGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGATCGG
* * ** * *
18945928 GTCCCCCTCTGCGTGCTGTTGATCCTGTTGCC-AAACCCTCGG-CTCGGTCCAATCTTAGACTAG
130 GTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTC-CGGTCCGATCTTAGACTAG
* * * *
18945991 GAATGAACTCCATATGCCTAAGCCAACCGACGAAATGA-CGTGTGCAACGGGGCGGGCGGCGGCA
194 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-G-G---C-GAGAGGGC-G-GGCA
* * * * *
18946055 CTAAACGCTTGACCAGAGAGACGGGA-GCCGGCAGGTCGTGGATCGAGTAGGGTGGGAGGTGGGG
251 CT--ACGC-CGGCCAGAGAGACGGGATG-C-GCAAGCCGTGGATCGA-TAGGGTGGTAGGT-GGG
** *
18946119 TTTTATTCACATCTTCATATTT-TGCATTGCCAATGCCATTTTTGATGGGCTTGTAAATTCATAA
309 -TTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTT-AT-GGCTTGTAAATTCATAC
* *
18946183 AATGGTCCCTTAAGCAC-TCA--TGGAGTTTTC-TGGCAAGACGACTCTTTTTTCTA-TTTTCAC
370 AATGGTCCCTTAAGC-CTTCACGTGAAG-TTTCATGGCAAGACGACTC-GTTTTCTATTTTTCAC
* * * * * * *
18946243 AATTTTTCAAAACTTTTTACAGTTCTGGGATTTTTTTAAATTTTTTCAGATAGGAGTGGTTGGCC
432 GATTTTT-GAAACTTTTTGCAGTTC-AGGATTTTTTAAAATTTTTTCGGA-AGGAGT-TTTGGCC
* * * *
18946308 CC-AAACTGGTAGACGTGATCCTTGTTTTTTTTTTGGCATGCACAAAAAAGTTCAGCT-AAAACT
493 CCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
18946371 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCT
558 CGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
18946436 ACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
622 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
18946501 AGGGATA-GGGGCCAATATAA-GGCCAAGTA-CAGCACCCATCGCACTTCATGTACGCACACACC
687 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCGCACACC
* * * * * * * *
18946563 CCCCGACCCCCCCGATCACCGAAACCCCAATGTCGTCGGTCAGCTTTTTCGGTGATGCTCCGACG
750 CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGACG
* ** * *
18946628 ATGGTGCCCTGGCGAAGAAAAATATGGCACCAGCTCATGCCCGAGCCCAGCATGTGCTGCCGCAA
814 ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA
*
18946693 CCCTCGGTCCGGTCTGATCT
879 CCCTCGGTCCGGTCCGATCT
*
18946713 TAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* ** * *
18946778 GAAATGAGCGTGCGGGCGCTCAGT-CGGCCA-AGGGGGCGGGATGCGCAAGCCAAGGATCG-GCC
66 GAAACGAGCGTGCGGGCGCTCA-TCCGGCCAGA-GGGGCGGGATGCGCAAGCCTGGGATCGATCG
* * * * * * * * *
18946840 GGTCGCTCTCTACGTGCTGCCGATCCTACTACCGTAACCCTTGGTCCGGTCTGATCTTAGAGTGG
129 GGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAG
*
18946905 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----GGGCGGGCACTACACCG
194 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGAGGGCGGGCACTACGCCG
* * *
18946966 GCCAGAGAGACGGGATACGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTC
259 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** * * *
18947031 ATATTTCTGTGTGACAATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTC
324 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* **
18947096 ACGTGAAG-TTCAATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCTT
389 ACGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAG
* * * * *
18947160 TTCGGGATTTTTTAAAGTTTTTTCGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTG
453 TTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTG
*
18947225 TA-TTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
518 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
18947289 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
583 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
18947354 AATGCTCTTTAAGGAGGTGTGACTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCC
648 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
18947419 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCTCCCCCGGCCCCCCCGATCGTCGGAACC
713 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGGCCCCCCCGATCGCCGGAACC
** * *
18947484 CCAATGCCGCCATTCAGGTTCTCTGGCGATGCTCCTACGATGGTGCCCC-GCGAAAAGAAAAATG
776 CCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCG--AAGAAAAATG
* * * *
18947548 CGGCACCAGGAACATGCTCGAGCCCACCATGTGCTTGCCACAACCC-CGTGGT-CGATCCGATCT
838 CGGCACCA-GCACATGCCCGAGCCCAGCATGTGC-TGCCACAACCCTC--GGTCCGGTCCGATCT
18947611 TAGGACT-GGAATGAAGCTCCGT-TGCTTAGGACT-GGAATGAAACTCCGTATGCCTAAGTCAAC
1 TA-GACTGGGAATGAA-CTCCGTATGCTTA-GACTGGGAATG-AACTCCGTATGCCTAAGTCAAC
* * * * * * **
18947673 CCATGAAACGAGCATGGGGGCACTCAGCCAG-CAGA--GAAGGGAT-CGCAAG--TGGAGGATCG
62 CCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCT-G-GGATCG
* * ** ** * * *
18947732 GTCGGGTCCCACTCTACGTGCTACCGATCCTACTATCGCAACCCT-GGTCTGATCCGAT-ATAGA
125 ATCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAG-
* * * *
18947795 ACTAGGAATGAACTCCG-ATGCC-GAGCC-ACCGACGAAACGAGCAGGCGAGCTTGCGCGTGAGG
189 ACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAG--AG-G-GCG-GG
* * *
18947857 CACATACGTCGGCC-GAGAATACGGGAT-CACAAGCCGATGGATCAGATAGGGTGG-AGGTGGGT
249 CAC-TACGCCGGCCAGAG-AGACGGGATGCGCAAGCCG-TGGATC-GATAGGGTGGTAGGTGGGT
* *
18947919 TTAGGCACATCTTCATA-TTCTGCATGCCAATACCATTTTTATGACTTGTAAATTCATACAATGG
310 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
18947983 TCCCTTAAGCCTTCACCGTGAAGTTTCATGGCAAGACGGACTCGTTTTTTTATTTTTCACGATTT
375 TCCCTTAAGCCTTCA-CGTGAAGTTTCATGGCAAGAC-GACTCG-TTTTCTATTTTTCACGATTT
* * * *
18948048 TGGAAACTTTTTGCAG-TCCGGCATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCATACA-
437 TTGAAACTTTTTGCAGTTCAGG-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA-AAAT
* *
18948111 TGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGTG
500 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
18948176 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAG
565 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
18948241 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
630 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
18948306 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCACCGGG
695 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC-CCGGC
* * * * *
18948371 CCTCCCGATTGCCAGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTAC
757 CCCCCCGATCGCCGGAACCCCAATGCCGC-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* *
18948436 CCCGACGAATAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGG
821 CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGG
*
18948501 TCTGGTCCGATCT
886 TCCGGTCCGATCT
* *
18948514 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAAGCCTAACTCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
18948579 GAAACGAGCGTGCGGGAGCTCAGCCAGCCAAAGGGGCGGGATGCGCAAG-CTGGGGATC-AGTCG
66 GAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCT-GGGATCGA-TCG
** * * * * * * * *
18948642 GGTCCCTTTCTGCGTGCGGCCGATCTTGCTGCTGCATCCCTCGGTCCGGTTCGATCTTAGACT-G
129 GGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAG
* * * * *
18948706 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGTCACTACGTCG
194 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGAGGGCGGGCACTACGCCG
*
18948771 GCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
259 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
18948836 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
324 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * * *
18948901 ACGTGAAGTTTCTTGCCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGT
389 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGT
* *
18948966 TCAAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGT
454 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGT
* *
18949031 ATTTTTTTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
519 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
18949096 TCGAAAAAAGTGTCCCCATTTCAGACGCATTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAA
584 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
18949161 AAGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
649 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
18949225 AGTACCAGCACCCATTGCACATCATGTGCGCACACCCCTCGGCCGCCCCGATCGCCGGAACCCCA
714 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* ** * *
18949290 ATGCCGTCGATCAGGTTCTCCGATGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATACGGCA
779 ATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCA
* * *** * *
18949355 CCAGCACATGCCTGAGCCCAGTATGTTGCTGCGGTAACCCTCTGTCCGCGTCCAATCT
843 CCAGCACATGCCCGAGCCCAGCATG-TGCTGCCACAACCCTCGGTCCG-GTCCGATCT
* * *
18949413 TAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * *
18949478 GAAACGAGCGTTCGGGCGCTCATCCGGCCAAAGGGGCGGGATGCGCAAGCCTGGGATCGATCAGG
66 GAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGATCGGG
* * * ** ** * *
18949543 TCCCCCTCTGCGTGCTATCGATCCTACTGCCGTAACCCTCAATTTGGTCCAATCTTAGACTGGGA
131 TCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGA
*
18949608 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGAGGGCGGGCACTACGTCGGC
196 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGAGGGCGGGCACTACGCCGGC
18949673 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
261 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
18949738 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
326 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * **
18949803 GTGAAGTTTCATAGCAAGATGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTGGGGTTC
391 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTC
* * * *** *
18949868 GGGATTTTTGAAAATTTTTTCGAAAGGAGTTTTGGTGTCAAACTTGGTAGACGTGATCCTTGTAT
456 AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTAT
* * * *
18949933 TTTTTTTGGCATGCACAATAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTC
521 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
18949998 GAAAAAAGTGTCCCCATTTCAGACACATTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
586 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
18950063 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
651 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * ** * * *
18950128 TATCAGCACCCATCGCACATCATGTGCACACAAGCCCTGGCCCCCCCGATTGTCGGAACCCCAAT
716 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAAT
* * * * *
18950193 GCCGC-GACTAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATTCAGCTCC
781 GCCGCGGTC-AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * *
18950257 AGCACATGCTCGAGCCCAGCATGTGCTGCCACGACCCTCGGTCCGATCCGATCT
845 AGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCT
*
18950311 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * **
18950376 GAAACAAGCATTCGGGCGCTCATCCGACCAGAGGGGCGGGATGCATAAGCC-GGTGATC-AGTCG
66 GAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCTGG-GATCGA-TCG
* * * * * * * * *
18950439 GTTCCCCCTCTACGTGCTGTTGATCCTGCTACCGTAACCCTTGGTCTGGTCTGATCTTAGACTTG
129 GGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAG
* * *
18950504 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGACGGGCGGGCGGGCACTAC
194 GAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGCGAGAGGGCGGGCACTAC
* * * *
18950569 GCCGGCCAGAAAGAAGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTACGCACAT
255 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
** *
18950634 CTTCATATTTCTGTGTGCAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
320 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * * *
18950699 CTTTACGTGAAGTTTCTTGGCAAGACAACTCG-TTTCTATTTCTCAAGATTTTTGAAACTTTTTA
385 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
** *
18950763 CAG-TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTTCAAAAATTGGTAGACGTGATCC
450 CAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCC
* * *
18950827 ATGTATTTTTGTTGGCATGCATAAAAAAATTTCAGCTAAAAACTCGAAGTGCACAAAGATTTTGT
515 TTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTAC-AAGATTTTGT
* *
18950892 GACCATTTTG-AAAAATTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
578 GACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * * *
18950956 ATCTCAAATGGTTTTTAAGGGGGTGTGAGTTCTTGAGGTCTGATAAGGGATAGGGGGCCAATATA
642 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
18951021 AGGGCCGAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCGGCCCCCCCGACCGTCG
707 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGCCG
** *
18951086 GAACCCCAATGCCGCCGGTCAGGTTCT-C--CGA---T-----GATGGTGCGTCGGTGAAGAAAA
771 GAACCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAA
* * * *
18951140 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTACAAGCCTCGGTCTGGTCTGATCT
835 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCT
* * * * *
18951204 TAGTCTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAATCAGCCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
18951269 GAAATGAGCGTGCGGGTGCTCAGT-CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGG
66 GAAACGAGCGTGCGGGCGCTCA-TCCGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGATCGG
* * * ** * * * ** * * * *
18951333 GTCCCTCTATGCGTGCCATCGATCCTGCTGCTGCAACCTTCAATCTGATCTGATCTTAGACTGGG
130 GTCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGG
* * * *
18951398 AATGAACTTC-TACGCCTAGGCCAACCGACGAAACGAGCGGGC---A-GGCGGGCACTACGCCGA
195 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGAGGGCGGGCACTACGCCGG
* *
18951458 CCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTTGGTTTAGGCACATCTTCA
260 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
18951523 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTTTAAATTCATGCAATGGTCCCTTAAGCCTTCA
325 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * ** *
18951588 CGTGAAGTTTCATGGCAAGACAACTCGTTTTCGATTTTTCATGATTTTCAAAACTTTTTGCGGTT
390 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTT
* * *
18951653 CAGGATTTTCTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAAATTGGTAGACGTGATACTTGTA
455 CAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTA
* * *
18951718 TTTTTGTTGACATGAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAAT
520 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
18951783 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
585 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
18951848 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAA
650 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
18951913 GTACTAGCACCCATCGCACATCATGTGCGCATACACCCCCCGG---CCTCGATCGCCGGAACCCC
715 GTACCAGCACCCATCGCACATCATGTGCGC--ACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
* * *
18951975 AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGC
778 AATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGC
* * * * ** * *
18952040 ACCAGCACATGCCCGAGCCTAGGATGTGCTGTCGCAACCCTCAATCTGATCCGATCT
842 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCT
** * * * * *
18952097 TACTCTAGGAATGAACTCCATATGCTTAGATTGGTAATGAACTCCGTATGCCTAAGTCAACCCAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * *
18952162 GAAATGAGCGTGCGGGCTCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCGGG
66 GAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGATCGGG
* * * * * **
18952227 TCCCCCTCTACGTGCTGTCAATCCTACTGCCACAACCCTCAGTTCAGTCTAATCTTAGACTAGGA
131 TCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGA
* * *
18952292 ATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGACGAACGGGCGGGTACTACGC
196 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GA-G-A-GGGCGGGCACTACGC
** * * *
18952357 CATCCAGAGAGACGGGATGTGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCT
257 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
18952422 TCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCT
322 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
18952487 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAA
387 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
18952542 CTCGGTATGC
Statistics
Matches: 5115, Mismatches: 583, Indels: 274
0.86 0.10 0.05
Matches are distributed among these distances:
882 35 0.01
883 4 0.00
884 325 0.06
885 59 0.01
886 86 0.02
888 9 0.00
889 1 0.00
891 2 0.00
892 172 0.03
893 561 0.11
894 109 0.02
895 141 0.03
896 123 0.02
897 128 0.03
898 282 0.06
899 267 0.05
900 696 0.14
901 463 0.09
902 659 0.13
903 177 0.03
904 191 0.04
905 253 0.05
906 120 0.02
907 24 0.00
908 7 0.00
909 19 0.00
910 1 0.00
913 29 0.01
914 169 0.03
915 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGATCGGG
TCCCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGAGGGCGGGCACTACGCCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTC
AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAAT
GCCGCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
GCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCT
Found at i:18951240 original size:26 final size:26
Alignment explanation
Indices: 18951202--18951254 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18951192 CTGGTCTGAT
* * *
18951202 CTTAGTCTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18951228 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18951254 C
1 C
18951255 CTAAATCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18953443 original size:26 final size:26
Alignment explanation
Indices: 18953414--18953466 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18953404 CCGGTCTGAT
*
18953414 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18953440 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18953466 C
1 C
18953467 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18954345 original size:26 final size:26
Alignment explanation
Indices: 18954316--18954368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18954306 CCGGTCCGAT
*
18954316 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACGCCGTATG
*
18954342 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTAGGAATGAACGCCGTATG
18954368 C
1 C
18954369 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACGCCGTATG
Found at i:18954570 original size:903 final size:901
Alignment explanation
Indices: 18952694--18954686 Score: 2918
Period size: 903 Copynumber: 2.2 Consensus size: 901
18952684 TACCGGTTCG
* *
18952694 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAA-CGGGCGGGTGGGC
1 ATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCGATGAAAC-AAGCGGGCGGGCGGGC
* * * * * * *
18952758 GGGCGGGCACTACGTCGACCAAAGAGAAGGGATGCT-CAAGCCACGGATCGATAGGCTAGTAGGT
64 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATG-TGCAAGCCATGGATCGATAGGGTGGTAGGT
* *
18952822 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTCT-TGGCTTGTAAATTCATAA
128 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT-TATGGCTTGTAAATTCATAA
* *
18952886 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATCGCAAGACACTCGTTTTCTATTTTTCACGATT
192 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAAACACTCGTTTTCTATTTTTCACGATT
** * *
18952951 TTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAATT
257 TTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAATT
*
18953016 GGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGT
322 GGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGT
* *
18953081 ACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTTAGACACTTTAAAGGCTACTGGCAGC
387 ACAAGAATTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGC
* *
18953146 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
452 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCCAGGTTTGATGAAGGATAGGG
* * * *
18953211 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGTGTACACACCCTTCTGGCCC
517 GACCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCA-TTGTGTACACACCCTCCCGGCCC
* * * * *
18953276 CCCGATCGTCGGAACCCCAACGCTGCTGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCCCC
581 CCCGATCATCGAAACCCCAACGCCGCTGGTCAGGTTCTCCCACGATGCTCCGACGATGGTGCCCC
* *
18953341 GACGAAGAAAAATGTGGCACCAGCACATGCCCATGCCCAGGATGTGCTGCCACAACCCTCGGTCC
646 GACGAAGAAAAATGCGGCACCAGCACATGCCCATGCCCAGCATGTGCTGCCACAACCCTCGGTCC
* * * *
18953406 GGTCTGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
711 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACGCCGTATGCCTAA
* * *
18953471 GTCAACCCATGAAACGAGCGTGCGGGCTCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGG
776 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCGCAAGCCAGGG
* * * * **
18953536 ATCGGTCGGGTCCCCCTCGACATGCTGTCGATCCTACTGCCGTAATCCTCCATTCGGTCTG
841 ATCAGTCGGGTCCCCCTCGACATGCTGCCGATCCTACTGCCGTAATCCTCCATCCGATCCA
* **
18953597 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGTAGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTC-GTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCG
* *
18953662 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGG
65 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGG
* *
18953727 GTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAAT
*
18953792 GGTCCTTTAAGCCTTCACGTGAAGTTTCA-CGGCAAAACGACTCGTTTTCTATTTTTCACGATTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATC-GCAAAAC-ACTCGTTTTCTATTTTTCACGATTT
** * *
18953856 TCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
258 TCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAATTG
* * * *
18953921 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTGAAAACTCAAAGTGTA
323 GTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTA
* * * *
18953986 TAAGAATTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCA
388 CAAGAATTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCA
* *
18954051 AACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTTTCCAGGTTTGATGAATGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCCAGGTTTGATGAAGGATAGGG
*
18954116 GACCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCA-TGTGTGCACACCC-CCCGGTCCC
517 GACCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATTGTGTACACACCCTCCCGG-CCC
* * *
18954179 CCCGATCATCGAAACCCCAATGCCG-TCGGTCAGGTTCTCCCAGGATGCTCCGGCGATGGTGCCC
581 CCCGATCATCGAAACCCCAACGCCGCT-GGTCAGGTTCTCCCACGATGCTCCGACGATGGTGCCC
* *
18954243 C-AGCGAAGAAAAATGCGGCACCAGCACATGCTCGA-GCCCAGCATGTGCTGCCGCAACCCTCGG
645 CGA-CGAAGAAAAATGCGGCACCAGCACATGC-CCATGCCCAGCATGTGCTGCCACAACCCTCGG
18954306 -CCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACGCCGTATGCC
708 TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACGCCGTATGCC
* * *
18954370 TAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCTAAAGGGGC-GGATGCGCAAGCC-
773 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCGCAAGCCA
** * * **
18954433 GAGGATCAGTCGGGTCCCCCTCTG-TGTGCTGCCGATCCTGCTGCCG-CATCCCTCGGTCCGATC
838 G-GGATCAGTCGGGTCCCCCTC-GACATGCTGCCGATCCTACTGCCGTAAT-CCTCCATCCGATC
18954496 CA
900 CA
* *
18954498 ATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCATCCGACGAAACAAAGCGGGCGGGCGGGC
1 ATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCGATGAAAC-AAGCGGGCGGGCGGGC
* *
18954563 GGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGT
64 -GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGT
*
18954628 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGTCA-TTTTATGGCTTGTAAATTC
128 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
18954687 GACGATGGTG
Statistics
Matches: 980, Mismatches: 93, Indels: 35
0.88 0.08 0.03
Matches are distributed among these distances:
900 3 0.00
901 103 0.11
902 148 0.15
903 424 0.43
904 234 0.24
905 68 0.07
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (901 bp):
ATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGG
GCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAAACACTCGTTTTCTATTTTTCACGATTTTCA
AAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAATTGGTA
GACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAA
GAATTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCCAGGTTTGATGAAGGATAGGGGACC
AATATAAGAGCCAAGTACCAGCACCCATCGCACATCATTGTGTACACACCCTCCCGGCCCCCCGA
TCATCGAAACCCCAACGCCGCTGGTCAGGTTCTCCCACGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCCATGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCC
GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACGCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCGCAAGCCAGGGATCAG
TCGGGTCCCCCTCGACATGCTGCCGATCCTACTGCCGTAATCCTCCATCCGATCCA
Found at i:18954803 original size:26 final size:26
Alignment explanation
Indices: 18954774--18954826 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18954764 CCGGTCTGAT
18954774 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18954800 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18954826 C
1 C
18954827 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18955695 original size:26 final size:26
Alignment explanation
Indices: 18955666--18955718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18955656 CTGATCCGAT
* *
18955666 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
18955692 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
18955718 C
1 C
18955719 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:18956588 original size:26 final size:26
Alignment explanation
Indices: 18956559--18956611 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18956549 CTGGTCTGAT
*
18956559 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18956585 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18956611 C
1 C
18956612 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18957282 original size:897 final size:889
Alignment explanation
Indices: 18954686--18957474 Score: 3957
Period size: 897 Copynumber: 3.1 Consensus size: 889
18954676 CTTGTAAATT
*
18954686 CGACGATGGTGCCCCGACGAAGAAAAATG-CGGCACCAGCACATGC-CTGAGCCCAGCATGTGCT
1 CGACGATGGTGCCCCGACGAAGAAAAATGTC-GCACCAGCAAATGCTC-GAGCCCAGCATGTGCT
* *
18954749 GCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
64 GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
18954814 GAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGACT
129 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCA
* * * * *
18954879 GGATGCGCAAGCCAGGGATTGGTCGAGTCCCCCT-CGACGTGCTGCCGATCCTGCTACCGTAACC
193 GGATGCGCAAGCGA-GGATCGGTCGGGTCCCCCTCCG-CGTGCTGCCGATCCTGCTGCCGCAACC
* * * * * *
18954943 CCCATTCTGGT-TCGATCTTAGACTGGGAATGAACTTCGTATGCCTAATCCAACGGGCGAAACGA
256 CTCAATCCGGTCT-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGA
* * *
18955007 ----GCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGCTGG
320 GCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGG
*
18955068 TTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
385 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
18955133 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCA
450 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-CACTCGTTTTCTATTTTTCA
* * * * *
18955198 TGATTTTCAAAACTTTTTCTAGTTTGGGATTTTTTAAAATTTTTTTGAAATGAGTCTTT-GCCTC
514 AGATTTTCAAAACTTTTTC-GGTTCGGGATTTTTTAAAATTTTTTTGAAA-GA-TTTTTGGCCCC
* ** *** *
18955262 GAACTTTTTTAGACGTGATCCTTGTATTTTTGTTGTTGTGCATAAAAAAATTCAGCTAAAAACTT
576 AAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTT
*
18955327 GAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTAC
640 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTAC
18955392 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
705 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
18955457 GGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
770 GGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * *
18955522 GACCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTC
835 GGCCCCCCCGATCGTC-GAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
* * * *
18955578 CGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTTGAGCCCAGCATGTTCTGC
1 CGACGATGGTGCCCCGACGAAGAAAAATGTCGCACCAGCAAATGCTCGAGCCCAGCATGTGCTGC
* * * * *
18955643 CGTAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAATTCCGTATGCTTAGACCGGGAATGA
66 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
18955708 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTTAGCTGGCCAGAGGGGTAGG
131 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGGCAGG
* * * *
18955773 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCACTGCGTGCTGCCAATCCTGCTGCCGCAACCCTC
195 ATGCGCAAG-CGAGGATCGGTCGGGTCCCCCTCCGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
* * * * * *
18955838 AATCCAGTCTGATCTTAGACTGGGAATGGACTCCGTATGCCTGAGCCAATCGATGAAACGAGCGG
259 AATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * *
18955903 GCAGGCGGGCACTATGCCGACCAAAGAGACGGGATGCGCAAGTCGTCGATCGATAGGGTGGTAGG
324 GCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGG
*
18955968 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTACGGCTTGTAAATTCATAC
389 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
18956033 AATGGTCCCTTGAGCCGTCACGTGAAGTTTCATGGCAAAACGACTCATTTTCTATTTTTCAAGAT
454 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCAAGAT
** * ** *
18956098 TTTTGAAACTTTTTGCGGTTCGAGATTACTTAAAATTTTTTCTGAAAGAGTTTTGGCCCCAAACT
518 TTTCAAAACTTTTT-CGGTTCGGGATTTTTTAAAATTTTTT-TGAAAGATTTTTGGCCCCAAACT
18956163 TGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
581 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
* *
18956227 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
646 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAG
* * *
18956292 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGCATAG
711 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
*
18956357 GTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCCC
776 GAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCC
* *
18956422 CCTCGATCGTCGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTC
840 CCCCGATCGTCGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
** ** *
18956472 CGGTGATGGTGCCCCGACGAAGAAAAATG-CGCACCAGCAAATGCTCGAGCATAGCATGTGCTGT
1 CGACGATGGTGCCCCGACGAAGAAAAATGTCGCACCAGCAAATGCTCGAGCCCAGCATGTGCTGC
* *
18956536 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
66 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * *
18956601 ACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGG
131 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCAGG
* * * *
18956666 AT-CTGGAAGTCGAGGATCGATCGGGTCCCCCTCCGCGTGCTGTCGATCCTACTGCCGCAACCCT
195 ATGC-GCAAG-CGAGGATCGGTCGGGTCCCCCTCCGCGTGCTGCCGATCCTGCTGCCGCAACCCT
** * * * *
18956730 CGGTCCGGTCTAATCTTGGGCTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCG
258 CAATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACG-AA--A-CG
* * * *
18956795 AGCGGGCGGGGCGGGCACTACGCGGGCCAGAGAGACAGGAAGCGCAAGCCGTAGATCGATAGGGT
319 AGCGGGC-GGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGT
* * ** *
18956860 GATAGGTGGGTTTAGGCACATCTTCATATTTCGGTGTACCAATGCCATTTTTATGGCTTGTAAAT
383 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
18956925 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACACTTGTTTTCTATTTTTC
448 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACACTCGTTTTCTATTTTTC
*
18956990 ACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCC
513 AAGATTTTCAAAACTTTTT-CGGTTCGGGATTTTTTAAAATTTTTTTGAAA-GATTTTTGGCCCC
* * * * *
18957055 AAACTTGGTGGATGTGATCGTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCG
576 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTG
* * *
18957120 AAGTGCACAAGATTTTGTCACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACT
641 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACT
* * **
18957184 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
706 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * *
18957249 GTTAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
771 GATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * *
18957314 GCCCCCCCGATCGCTGGAACCCCAATTCCACCGGTCAGGTTCTCCGACGATGCTC
836 GCCCCCCCGATCG-TCGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
* * *
18957369 CGACAATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAAATGCTCGAGCCTAGCATGTGCTGC
1 CGACGATGGTGCCCCGACGAAGAAAAATGTCGCACCAGCAAATGCTCGAGCCCAGCATGTGCTGC
18957434 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
66 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
18957475 CCAAGCTGGG
Statistics
Matches: 1682, Mismatches: 189, Indels: 46
0.88 0.10 0.02
Matches are distributed among these distances:
891 1 0.00
892 273 0.16
893 242 0.14
894 283 0.17
895 40 0.02
896 238 0.14
897 325 0.19
898 280 0.17
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CGACGATGGTGCCCCGACGAAGAAAAATGTCGCACCAGCAAATGCTCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGGCCAGAGGGGCAGGA
TGCGCAAGCGAGGATCGGTCGGGTCCCCCTCCGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAA
TCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
GGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACACTCGTTTTCTATTTTTCAAGATTTT
CAAAACTTTTTCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGATTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
TCGTCGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
Found at i:18958245 original size:805 final size:803
Alignment explanation
Indices: 18956679--18958252 Score: 2375
Period size: 805 Copynumber: 2.0 Consensus size: 803
18956669 TGGAAGTCGA
* * * *
18956679 GGATCGATCGGGTCCCCCTCCGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCTAAT
1 GGATCGACCGAGTCCCCCTCCGCGTGCTATCGATCCTACTGCCGCAACCCTCGGTCCGGTCCAAT
* * * *
18956744 CTTGGGCTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGGCGG
66 CTTAGACTAGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACGAGCGAGC--GCGGGGCAG
* * *
18956809 GCACTACGCGGGCCAGAGAGACAGGAAGCGCAAGCCGTAGATCGATAGGGTGATAGGTGGGTTTA
129 GCACTACGCCGACCAGAGAGACAGGAAGCGCAAGCCATAGATCGATAGGGTGATAGGTGGGTTTA
* *
18956874 GGCACATCTTCATATTTCGGTGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
194 GGCACATCTTCATATTTCGCTGTACCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCC
**
18956939 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACACTTGTTTTCTATTTTTCACGATTTTCAAAAC
259 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACACTCATTTTCTATTTTTCACGATTTTCAAAAC
* * *
18957004 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTGGATG
324 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
18957069 TGATCGTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGCACAAGATT
389 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGCACAAGATT
18957134 TTGTCACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTAGCAGCAAACCTGTA
454 TTGTCACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTAGCAGCAAACCTGTA
* * *
18957199 AAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGTTAGGGGGCCAATA
519 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
18957264 TAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCT
584 TAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
* *
18957329 GGAACCCCAATTCCACCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGACGAAGAAA
649 GGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACAATAGTGCCCCGACGAAGAAA
** * *
18957394 AATGTGGCACCAGCAAATGCTCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCT
714 AATGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCT
18957459 TAGACTGGGAATGAACCCAAGCTGG
779 TAGACTGGGAATGAACCCAAGCTGG
* * * *
18957484 GGATCGACCGAGTCCCGCTCCGCGTGCTATCGATCCTGCTGCCGCAACCTTCGGTCCGGTCCGAT
1 GGATCGACCGAGTCCCCCTCCGCGTGCTATCGATCCTACTGCCGCAACCCTCGGTCCGGTCCAAT
* *
18957549 CTTAGACTGGGAATGAAC-TCTATATGCCTAAGCCAACCGACGAAATGAGCG-GC-C-GGGCAGG
66 CTTAGACTAGGAATGAACTTC-ATATGCCTAAGCCAACCGACGAAACGAGCGAGCGCGGGGCAGG
* * * * *
18957610 CACTACGCCGACCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
130 CACTACGCCGACCAGAGAGACAGGAAGCGCAAGCCATAGATCGATAGGGTGATAGGTGGGTTTAG
* * *
18957675 GCACATCTTCATATTTCTGCT-TGCCAATGCCATTTTAATGGCTTGTAAATTCATATAGTGGTCC
195 GCACATCTTCATATTTC-GCTGTACCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCC
* **
18957739 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTGGAAA
259 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-CACTCATTTTCTATTTTTCACGATTTTCAAAA
* * *
18957804 CTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
323 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
18957869 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
388 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGCACAAGAT
* * *
18957934 TTTGTGACCATTTGAAAAACGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTG
453 TTTGTCACCATTTGAAAAA-GTGTCCCCATTTCAGACACTTTAATTGCTACTAGCAGCAAACCTG
*
18957999 TAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
517 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
18958064 TATAAGGGCCAAGTACCAGCTCCAATCGCACATCATGTGCGCACACCCCCCTTCGGCCCCCCTGA
582 TATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACA-CCCCC--CGGCCCCCCCGA
** * * * * **
18958129 TCGCCGGAACCCCAATGCTGCTGGTCAGGTTCTCCGGCGATGCTCCGGCGATAGTGCCCCGGTGA
644 TCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACAATAGTGCCCCGACGA
* * * *
18958194 AGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATTTGCTGTCGCAACCCTTGGTC
709 AGAAAAATGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
18958253 CCTTAAGCCT
Statistics
Matches: 689, Mismatches: 73, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
800 151 0.22
801 167 0.24
802 146 0.21
803 5 0.01
804 4 0.01
805 216 0.31
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (803 bp):
GGATCGACCGAGTCCCCCTCCGCGTGCTATCGATCCTACTGCCGCAACCCTCGGTCCGGTCCAAT
CTTAGACTAGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACGAGCGAGCGCGGGGCAGGC
ACTACGCCGACCAGAGAGACAGGAAGCGCAAGCCATAGATCGATAGGGTGATAGGTGGGTTTAGG
CACATCTTCATATTTCGCTGTACCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACACTCATTTTCTATTTTTCACGATTTTCAAAACTT
TTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGCACAAGATTTT
GTCACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTAGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGG
AACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACAATAGTGCCCCGACGAAGAAAAA
TGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTA
GACTGGGAATGAACCCAAGCTGG
Found at i:18958784 original size:26 final size:26
Alignment explanation
Indices: 18958748--18958800 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18958738 CCGGTCCGAT
*
18958748 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18958774 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18958800 C
1 C
18958801 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18959688 original size:26 final size:26
Alignment explanation
Indices: 18959649--18959701 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18959639 CCGGTCCGAT
*
18959649 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
18959675 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18959701 C
1 C
18959702 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18960058 original size:876 final size:883
Alignment explanation
Indices: 18958657--18969065 Score: 11658
Period size: 877 Copynumber: 11.7 Consensus size: 883
18958647 CGGTTAGGTT
* ** * * *
18958657 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCGCATGCTCGAGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
18958722 TGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATTAAC-TCTGTATGCTTAGACTGGGA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTC-GTATGCTTAGACTGGGA
* * * * * *
18958786 ATGAACTCTGTATGCCAAAGTCAACCCA-GAAAACGAACGTGCGGGTGCTCAGTCGGCCAGAAGG
130 ATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * * *
18958850 GCGGGATGCGCAAGTCGTGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCTTGCTACCGCAA
194 GCGGGATGCACAAGCCGAGGATCGGTCGGGTCACCCTCTGCTTGCTGCCGATCTTGCTGCCGCAA
* ** *
18958915 CCCTCGATTTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
259 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
* * * *
18958980 AACGGGCAGGCGGGTGGACGGGCACTATGCCAGCCAGAGA-GATAGGATCCACAAGCAGTGGATC
324 AGCGGGC--GC----GG-C-GG---TA---C-G--AGAGACG---GGATGCGCAAGCCGTGGATC
18959044 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
369 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
18959109 TTGTAAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
434 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
18959174 CTATTTTTCATGATTTTTGAAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGATT
499 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATT
* *
18959239 TTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCGCAAAAAAATTCAGCTA
564 TTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
18959304 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTCA
629 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
18959369 TGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
694 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
18959434 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCAC
759 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
18959499 A-CCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCACCAGTCAGGTTCTCCGACGATG
824 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
*** * * * * *
18959558 CTCCGACGATGGTGCCCCAATGAAGAACAATACAGTACCCGCACATGCCCGAGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
18959623 TGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAA
* * * * *
18959688 TGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGG-
131 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * *
18959752 GGGATGCAAAAGTCGAGGATCGGTCGGGTCACCCTCTGCTTGCTACCGATCTTACTGTCACAACC
196 GGGATGCACAAGCCGAGGATCGGTCGGGTCACCCTCTGCTTGCTGCCGATCTTGCTGCCGCAACC
** *
18959817 CTCGGTCTAGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAG
261 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAG
* * * * *
18959882 CGGGC-CGGC-GTA-GAG-G-CGGGATGTGCAAGCCGTGCATCAATAGTGTGGTAGGTGGGTTTC
326 CGGGCGCGGCGGTACGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
18959942 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
391 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* **
18960007 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAA
456 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * **
18960072 CTTTTTACAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTATTAGAC
521 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTT-GCCCCAAACTTGGTAGAC
*
18960137 GTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAT
585 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
18960202 TTTGTGACCATTTGAAAAAACTAT-CCCATTTCAAACACTTTAATGGCTACTGGCAGCAGACCTG
650 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
18960266 TAAGATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
715 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
18960331 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCG
780 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * **
18960395 -CTGGAACCCTAATGCCGCCGGTCAGGTTCTCTGGTGATG
845 TC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
*
18960434 CTCCGGCGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * *
18960499 TGTCGCAACCCTCGGTCTGATCCGATCTTAGACT-AGGAATGAACTCCGTATGGTTGGACTGGGA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGA-GAATGAACTTCGTATGCTTAGACTGGGA
* * *
18960563 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTGCGTGTGCTCAGCCGGCCAGAGGGG
130 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * * * * **
18960628 CAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCGCT-ATGTGCTGTCGATCCTACTGTTGCAA
195 CGGGATGCACAAGCCGAGGATCGGTCGGGTCACCCTCTGCT-TGCTGCCGATCTTGCTGCCGCAA
* * ** * ** *
18960692 CCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATGGATGAAATG
259 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
* * * *
18960757 CGCGGGTGGGCGGGCAGGCGGGCACCACGTCGGTCAGAGAGACGGGATGCGCATGCCATGGATCG
324 AGC----GGGC--GC-GGC--G------GT---AC-GAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
18960822 ATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
370 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * *
18960887 TGTAAATTCATACAATGGTCCCTTAA-CCTTCATGTGAAGTTTCATTGCAAGATGACTCGTTTTC
435 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
18960951 TA-TTTTCATGATTTTGGAAACTTTTTACGGTTCGGGA---TTT----TTTTTT-GAAAGGAGTT
500 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTT
** * * * * *
18961007 TTGAAACAAAACTTGGTAGACGTGGTCCTTGTTTTTTTATTGGCATGCACAAAAAAATTCAGCAA
565 TTG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
18961072 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
629 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
18961137 TGGCTACTGGCAGCAAA-CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
694 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
18961201 TGATGAGGGATAGGGGGCGAATATAA-GG----G--CCAGCACCCATCGCACATCATGTGCGCAC
759 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
18961259 ACCCCCCCGG-CCCCCCGATTGCCTGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA--
824 A-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* ** * * *
18961317 -T--G--G-T-GT--CGCGATGAAGAAAAATACGGCACCAGTACATGCCTGAGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * *
18961373 TGCCACAACCATCGGTGCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAA
* * * * * * * *
18961438 AGAACTCCATATGCCTAAGTCAACCCACGGAACAAGCCTGCGGGCGTTTAGCCGACCAGAGGGGC
131 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * *
18961503 GGGATGCGCAAGCCGGGGATCGG-CTGCGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCGCAAC
196 GGGATGCACAAGCCGAGGATCGGTC-GGGTCACCCTCTGCTTGCTGCCGATCTTGCTGCCGCAAC
* * * * *
18961567 CCTCGGTCCAGTCTGATCTTAGATTGGGAATGAACCCCGTATGCCTAAGCCAATCGACGAAACGA
260 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA
*
18961632 GCGGGCGGGTGGGCGGCCGGGCACTACTTCGACTAAAGAGACGAGATGCGCAAGCCGTGGATCGA
325 GCGGGC------GCGG-C-GG---TA---CG-----AGAGACGGGATGCGCAAGCCGTGGATCGA
* * * ***
18961697 CATGGGTAGTAGGTGGGTTTAGGGACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
371 TA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
*
18961762 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
435 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
18961827 TATTTTTCATGATTTTTAAAACTTTTTGA-GGTTCAGGATTTTTTTAAAATTTTTTCGGTAGGAG
500 TATTTTTCATGATTTTTGAAACTTTTT-ACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGA-
* * * * *
18961891 CTTTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGC
562 TTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
18961956 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
627 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
18962021 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGG
692 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
18962085 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCGCGCATCATGTGCGC
757 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
18962150 ACACCCCCCTCGGCACCCTCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT-C-A-G--G
822 ACA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* ** * *
18962209 -T--GATGA--G-GCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
18962268 TGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT--G-A-G-A------ATG---A-AC------
* *
18962333 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCCT
110 T----T-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * **** * *
18962398 GCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGAAGATTAACCGTGTCCCCCTCTG-
170 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCACCCTCTGC
* * * * * * * *
18962462 TGTGCTACCGATCCTGCTACCGCAGCCCTCGGTCCAGT-TCGATCTTAAATTGGGAATGAACTCT
235 T-TGCTGCCGATCTTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCC
* *
18962526 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGATGGGCGGGTGGGCATTACGTCGGTGAAAG
298 GTATGCCTAAGCCAACCGACGAAATGAGCGGGC------GC-GG-CGG---TA---C---G--AG
* * *
18962591 AGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTC
344 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
18962656 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
409 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * **
18962721 GTTTCATGGCAAGACGACTTGTCTTCTATTTTTCATGATTTTCAAAACTTTTTA----T--GG--
474 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGAT
* * *
18962778 -TTTTAAAATTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
539 TTTTTAAAATTTTTTCGGAAGGA-TTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
**
18962842 TTGGCATGCGTAAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
603 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
18962906 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCTCT
668 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
18962971 TTAAGGGAGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAA-ATAAGGGCTAAGTACCA
733 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
** * *
18963035 GCACCCATCATACATCATGTGCGCACATCCCCCCAGCCCCCCAGATCGTCGGAACCCCAATGCCG
798 GCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
*
18963100 CCAGTCAGGTTCT-C--CG--G
862 CCGGTCAGGTTCTCCGACGATG
** ** * * * * *
18963117 ----G--GATGGCACCCCGACGAAGAAAAATGCGACACCGGCACATGCCCAAGCACAG-GTGTGC
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** * * * *
18963175 TATCGCAACCCTCGGACCGGTCCGATCTTAGGCTGGGAATGAAC-TCTGTTTGCTTAGACTGGGA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTC-GTATGCTTAGACTGGGA
* * **
18963239 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTGCGGGCGCTCAGCCTACCAGAGGGG
130 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * *
18963304 CGGGATGTACAAACC-AGGATCGG-CTAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAA
195 CGGGATGCACAAGCCGAGGATCGGTC-GGGTCACCCTCTGCTTGCTGCCGATCTTGCTGCCGCAA
* * * *
18963367 CCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATG
259 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
* * *
18963432 AACGGGCAGGGGGGCGGGCAGTACGTCGACCAGAGAAACGGGATGCGCAAGCCGTGTATCGATAG
324 -A---GC--GGGCGC-GGC-G---GT--A-C-GAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * *
18963497 GGTGGTAGGCT-GGTTTTGGCATATCTTCATATTTTTGCATGCCAATGACATTTTTATGGCTTGT
374 GGTGGTAGG-TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
*
18963561 AAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTT-TAT
438 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * * * *
18963625 TTTTCACAATTTTTGAAACTTTTTACGGTTCGGCATTTTTTAAAATTTTTTTGAAAGGAGTTTTG
503 TTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTG
* * * * *
18963690 TCCCAAAATTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGTTAAAA
568 -CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
18963755 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
632 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
18963820 CTACAGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAA-GGGGTGTGAGTTCTAGAGGCTTGA
697 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
18963884 TGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
762 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--
* *
18963949 CCCATCCCCGGCCCCCCCGATCGCCGGAACCCCTAATGCCGCCGGTTAGGTTCTCCGACGATG
825 -CC--CCCCGGCCCCCCCGATCGTCGGAACCCC-AATGCCGCCGGTCAGGTTCTCCGACGATG
* * * * *
18964012 CTCTGGCAATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
18964077 TGTCGCAA-CC-C--T-C-G---G---TT---C-G-G--T---C-T-G-AT-CTTAGACTGGGAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAA
*
18964116 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCA-AGGGGC
131 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * ** * * *
18964180 AGGATGCACAAGCCGAGGATAGGTCGGGTC-CCTCTCT-CTGTGCTGTTGATCCTGCTACAGCAA
196 GGGATGCACAAGCCGAGGATCGGTCGGGTCACC-CTCTGCT-TGCTGCCGATCTTGCTGCCGCAA
* * **
18964243 CCCTCGATCCGGTCTGATCTTAGACTGCGAATGAACTTTGTATGCCTAAGCCAACCGACGAAATG
259 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
* * * **
18964308 AGCGGACGGGTGGGCGGGGGGGGGCACTACGCCGGCCAGAGAGACAGGATGCATAAGCCGTGGAT
324 A---G-C----GGGC--GCGGCGG---TA-------C-GAGAGACGGGATGCGCAAGCCGTGGAT
*
18964373 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
368 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
18964438 CTTGTAAATTCAT--AATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
433 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
18964501 TTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAACTTTTTTTGGAAGGAG
498 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-
* * * * *
18964566 TTCTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTAGTTGGCATGCACAAAAAAATTCAGC
562 TTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
18964631 TAAAAACTCGACGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
627 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
18964696 AATGGCTAC-GGCAGCAAACTTGTAAATTCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
692 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
18964760 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACTAGCACCCATCGCACACCATGTGCGC
757 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
18964825 ACACCCCCTGGCCCCCCCGATCATCGGAACCCCAATGCCACCGGTCAGGTTCT---TCG--G
822 ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* *
18964882 -T-----GATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA-ACTGCCCGAGCCCTA-CAAGT
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACA-TGCCCGAGCCC-AGCATGT
** * * * *
18964939 GCTATCACAACCCTCGGTCCGATCCAATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGG
64 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGG
* * * *
18965004 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAGTCGGCCAGAGGG
129 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* ** * * * * * * * *
18965069 GCAGGATGCGTAAGTCG-GGATCGATCGGGTCCCCCGCTACGTGCTGTCGATCCTGCTGCCGCAG
194 GCGGGATGCACAAGCCGAGGATCGGTCGGGTCACCCTCTGCTTGCTGCCGATCTTGCTGCCGCA-
* * * * * *
18965133 A-ACTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACTGATGAAAC
258 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-
* * * *
18965197 GAGTGTGCGGGCGGGCGGGCGGGCGGGCACTATGCCGACCAGAGA-GATGAGATACGTAAGCCAT
321 -A---T--GAGCGGGC--GC-GGC-GG---TA---CG---AGAGACG--G-GATGCGCAAGCCGT
* *
18965261 GGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTT
364 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * **
18965326 ATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCATCACGTGAAGTTTTTTGGCAAGACGACTC
429 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
18965391 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTTAAATTTTTTCAGAA
494 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* ** ** *
18965456 GGAGTTTTGAACCAAGACTTGGTAGATATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAAT
559 GGATTTTTGCCCCAA-ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
18965521 CAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTCCAGACA
623 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
18965586 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTT
688 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
18965651 GAGGTTTGATGAGGGATAGCGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGT
753 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * *
18965716 GCGCACACCCCTCCGG-CCCCCCGATCGTCGGAACCCCAAAACCGCCGGTCAAGTTCTTCGACGA
818 GCGCACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
18965780 TG
882 TG
* *
18965782 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGTGGCACCAGCACATGGCCGCA-CCCAGCATGTG
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCG-AGCCCAGCATGTG
* * * * * *
18965846 CTGCCACGACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGA
65 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGA
* * * * *
18965911 ATGAACTCCGTATGCCTAAGTCACCCCACGAAATGAGCGTACAGGCGCTCAGTCGGCCAGAGGGG
130 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * *
18965976 CAGGATGCGCAAGCCGGGGAT-TGACTGGGTCACCTTCTG-TGTGCTGCCGATCTTGCTGCTGCA
195 CGGGATGCACAAGCCGAGGATCGGTC-GGGTCACCCTCTGCT-TGCTGCCGATCTTGCTGCCGCA
* ** * *
18966039 ACCCTCGATCCGGTCCCATCATAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAC
258 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-
* *
18966104 GAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAGGAGATGCGCAAGCCGTGGATC
321 -A-TGAGCGGGC--GC-GGC-GG---TA---C-G--AGAGA-CGG-GATGCGCAAGCCGTGGATC
* *
18966169 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGCATGCCAATACCATTTTTATGGC
369 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
18966234 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
434 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** *
18966299 CTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATT
499 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATT
* *
18966364 TTTGGCCCCAAAC-TGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
564 TTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
18966428 AAAAACTC-AATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTT
628 AAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * * *
18966492 AATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTATGAGTTCTTGATG
692 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
18966557 TTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGAACCCATCGCACATCATGTGTGC
757 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * **
18966622 ACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATACCGTCGGTCAAGTTCTTTGACGATG
822 ACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * *
18966685 TTCCGACGCTGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCAGTGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** *
18966750 TGCCGTGA-CC-C--T-C-G---G----T---CTG-G--T---C--CG-AT-CTTGGACTGGGAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAA
* *
18966789 TGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGC
131 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * *
18966854 AGGATGCACAAGCC-AGGGATCGATCGGGTCACCCTCTG-TGTGCTACCGATCTTGTTGTCGCAA
196 GGGATGCACAAGCCGA-GGATCGGTCGGGTCACCCTCTGCT-TGCTGCCGATCTTGCTGCCGCAA
* ** * *
18966917 ACCTCATTCCGGTCTGATCATAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACG
259 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--
* * * *
18966982 AGTGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATACGTAAGCCGTGGATCG
321 A-TGAGCGGGC--GC-GGC-GG---TA-------C-GAGAGACGGGATGCGCAAGCCGTGGATCG
* * * *
18967047 ATAGGTTGGTAGGTGCGTTTAGGCACATCTTCATATTTCGGCATGCCAATGCCATTTTTATGACT
370 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * *
18967112 TGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTC
435 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
18967177 TATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
500 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTT
* ** * *
18967242 TTGTTCCCAAACTTATTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCA
565 TTG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
18967307 AAAACTCAAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAG
629 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
18967372 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
694 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
18967437 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
759 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * * *
18967502 ACCCCCCAG-CCCCCCGATCGCCGGAACCTCAATACCGCTGGTCAAGTTCTCTGACGATG
824 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* *
18967561 CTCCGACAATGGTGCCCCGGGGAAGAAAAATGCGGCACTAGCACATGCCCGAGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
18967626 TGCCGCGACCCTCGGTCCGATCCGATCTTAGACTGAGAATGGACTTCGTATGCTTAGACTGGGAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAA
* * * * **
18967691 TGAACTCCGTATGCCTAAGTCAA-CCATTGAAACGAGCGTACGGGCACTCAACCAACCAGAGGGG
131 TGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * ** * ** *
18967755 -GGGATGCAAAAGCCGAGGATCGGTCGGGTCACCTTTTGCTTGCTATCAATCTTAATGTCGCAAC
195 CGGGATGCACAAGCCGAGGATCGGTCGGGTCACCCTCTGCTTGCTGCCGATCTTGCTGCCGCAAC
* * * * *
18967819 CCTCAGTCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTGAGCCAACCGACGAAACGA
260 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA
*
18967884 GCGGGC-CGGC-GT---AGAGACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTT
325 GCGGGCGCGGCGGTACGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
18967944 CGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
390 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
**
18968009 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
455 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * **
18968074 ACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTATTAGA
520 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTT-GCCCCAAACTTGGTAGA
* * * * *
18968139 CGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAATCAGCCAAAAACTAGAAGTGTACAAGA
584 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
18968204 TTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
649 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
18968269 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
714 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
18968334 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATC
779 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * *
18968398 GCCGGAACCCCTATACCGCTGGTCAAGTTCTCCGACGATG
844 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * *
18968438 CTCCGATGATGGTACCCCGGGGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
18968503 TGTCGCGA-CC-C--T-C-G---G----T---CT--G---G----TCATAT-CTTAGACTGGGAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAA
* * * * *
18968542 TGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGG-
131 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
** * *
18968606 GGGATGCACAAGCCGAGGATCGACCGGGTCACCCTCTGCTTGCTGCCAATCTTACTGCCGCAACC
196 GGGATGCACAAGCCGAGGATCGGTCGGGTCACCCTCTGCTTGCTGCCGATCTTGCTGCCGCAACC
* * * * *
18968671 CTCGGTCTGGTCTGACCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
261 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--TG
*
18968736 CAGGCGGGCAGGCAGGCGGGCACTACGCCGGCCTGAGAGACGGGATGCGCAAGCCTTGGATCGAT
324 -A-GCGGGC--GC-GGC-GG---TA-------C-GAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
18968801 AGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
372 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
18968866 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
437 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * * * *
18968931 TTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTCTTCGAAATGAGTTTT
502 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-TTTT
* * * *
18968996 TGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTATTGGCATGCACAAAAAAACTCAGCCAAA
566 TGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
18969061 AACTC
631 AACTC
18969066 CAATGCTACT
Statistics
Matches: 8310, Mismatches: 863, Indels: 696
0.84 0.09 0.07
Matches are distributed among these distances:
851 182 0.02
852 7 0.00
853 1 0.00
854 1 0.00
855 6 0.00
856 1 0.00
858 1 0.00
859 4 0.00
861 3 0.00
863 1 0.00
864 58 0.01
865 3 0.00
866 1 0.00
867 1 0.00
868 2 0.00
869 3 0.00
870 7 0.00
872 3 0.00
873 6 0.00
874 291 0.04
875 420 0.05
876 1038 0.12
877 1251 0.15
878 251 0.03
879 15 0.00
880 189 0.02
881 367 0.04
882 102 0.01
883 7 0.00
884 142 0.02
885 205 0.02
886 191 0.02
887 40 0.00
888 5 0.00
889 28 0.00
890 188 0.02
891 203 0.02
892 146 0.02
893 53 0.01
894 232 0.03
895 264 0.03
896 11 0.00
897 11 0.00
898 5 0.00
899 38 0.00
900 166 0.02
901 424 0.05
902 328 0.04
903 347 0.04
904 6 0.00
905 7 0.00
906 183 0.02
907 123 0.01
908 80 0.01
909 151 0.02
910 121 0.01
914 2 0.00
916 2 0.00
919 1 0.00
920 147 0.02
921 234 0.03
922 3 0.00
924 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
CTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
GGGATGCACAAGCCGAGGATCGGTCGGGTCACCCTCTGCTTGCTGCCGATCTTGCTGCCGCAACC
CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAG
CGGGCGCGGCGGTACGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
Found at i:18961435 original size:26 final size:26
Alignment explanation
Indices: 18961399--18961451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18961389 GCGGTCTGAT
* *
18961399 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
18961425 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
18961451 C
1 C
18961452 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:18962333 original size:26 final size:26
Alignment explanation
Indices: 18962294--18962372 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
18962284 CTGGTCCGAT
* *
18962294 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18962320 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18962346 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18962372 C
1 C
18962373 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18962781 original size:19 final size:18
Alignment explanation
Indices: 18962748--18962790 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
18962738 CTTGTCTTCT
18962748 ATTTTTCATGATTTTCAAA
1 ATTTTTCATGATTTT-AAA
*
18962767 ACTTTTT-ATGGTTTTAAA
1 A-TTTTTCATGATTTTAAA
18962785 ATTTTT
1 ATTTTT
18962791 TCAGAAGGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 8 0.36
20 5 0.23
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.58
Consensus pattern (18 bp):
ATTTTTCATGATTTTAAA
Found at i:18964996 original size:26 final size:26
Alignment explanation
Indices: 18964967--18965019 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18964957 CCGATCCAAT
18964967 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
18964993 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18965019 C
1 C
18965020 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18965909 original size:26 final size:26
Alignment explanation
Indices: 18965873--18965925 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18965863 CTGGTCCGAT
18965873 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18965899 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18965925 C
1 C
18965926 CTAAGTCACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18967691 original size:26 final size:26
Alignment explanation
Indices: 18967652--18967704 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18967642 CCGATCCGAT
* *
18967652 CTTAGACTGAGAATGGACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
18967678 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18967704 C
1 C
18967705 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18971535 original size:26 final size:27
Alignment explanation
Indices: 18971483--18971536 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
18971473 CTGGTCCGAT
* *
18971483 CTTAGACTGGGGAATGAACTTCGTATG
1 CTTAGACTGGGGAATGAACTCCATATG
*
18971510 CTTAGA-TTGGGAATGAACTCCATATG
1 CTTAGACTGGGGAATGAACTCCATATG
18971536 C
1 C
18971537 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (27 bp):
CTTAGACTGGGGAATGAACTCCATATG
Found at i:18972423 original size:26 final size:26
Alignment explanation
Indices: 18972387--18972439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18972377 CCGATCCGAT
* *
18972387 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
18972413 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
18972439 C
1 C
18972440 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:18974281 original size:26 final size:26
Alignment explanation
Indices: 18974245--18974298 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
18974235 ACATGCCTGA
18974245 GCGTAGACTGGGAATGAACTCTGTAT
1 GCGTAGACTGGGAATGAACTCTGTAT
18974271 GCGTAGACTGGGAATGAACTCTGTAT
1 GCGTAGACTGGGAATGAACTCTGTAT
18974297 GC
1 GC
18974299 CTAAGTCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (26 bp):
GCGTAGACTGGGAATGAACTCTGTAT
Found at i:18974630 original size:857 final size:859
Alignment explanation
Indices: 18972625--18975159 Score: 3433
Period size: 857 Copynumber: 2.9 Consensus size: 859
18972615 TGCGTAAGTA
* * * *
18972625 GGGGATTGGTCGGGTCCTCCTCTGTGTGCTACCGATCCTGCTGCTGCAACACTCGGTCTGGTCTG
1 GGGGATCGGTCGGGTCC-CCTCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTG
* * *
18972690 ATCTGAGATAGGGAATGAACTCTGTATGCCTAA-TCAACCAACGAAACGAGCGGGCTGACGGGCG
65 ATCTTAGAT-GGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA-------GACGGGCG
* *
18972754 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGCGAGGTAGGTGG
122 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
18972819 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
187 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
18972884 GGTCCCTTAA-CCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTT
252 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
*
18972948 TGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGG
317 TGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT-GCCCCAAACTTGG
*
18973013 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTAC
381 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTAC
18973078 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
446 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* ** *
18973143 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGCTTGATGAGAGAT-AGGG
511 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG-GATAAGGG
* * *
18973207 GCCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCACGTGCGCACACCCCCCCGG-TCCC
575 G-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * *
18973271 TCCGATCGCCGGAACCCCAATGCTGCCGGCCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
639 T-CGATCGCCGGAACCCAAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGACGATGGTGCCCC
*
18973336 AACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCGGTCC
702 AACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGC-GATGCAA-CCTC-GT-C
* ** *
18973401 GGTCCGATCTTTTACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
763 -GT-C-ATCGTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG
* * * *
18973466 CGCTCAGCTGGCCAGAGGGCTGGGATGCCTAAGCT
825 CGCTCAGCCGGCCAGAGGGCTAGGATACCTAAGCC
* * * **
18973501 GGGGATCGATCGGGTCCCC-CTCGTGTGCTGCTGATCCTGCTGCTGCAACCCTCGGTCCGATCAA
1 GGGGATCGGTCGGGTCCCCTCT-GTGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTG
* * * *
18973565 ATCTTTGAGTGGGAATGAACT-TCATATGCCAAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
65 ATCTTAGA-TGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGA---GACGGGC--G-
*
18973629 GGACGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
122 GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
18973694 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATTCCATTTTTATGGCTTGTAAATTCATAAAA
186 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
18973759 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
251 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTT
** ** ** * * *
18973824 TCCAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTTGTAAGGAGTTTTGACCCCAAACAT
316 TTGAAACTTTTTGTGGTTTGGGA-TTTTTTAAAATTTTTTCGAAAGGAGTTTTG-CCCCAAACTT
* * *
18973889 GATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGTGT
379 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGT
* *
18973954 ACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCTAATTCAGACACTTTAATGGCTACTGGCAGC
444 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
18974018 AAACCTGT-AAATCTCAAATGCTCTTTAATGGGGTGTGAGTTGTCAAGGTTTGATGAGGATAAGG
509 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGATAAGG
** *
18974082 GGCCAATATAAGGGTGAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCC
574 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
18974147 TCGATCGCCGGAACCCAAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCA
639 TCGATCGCCGGAACCCAAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCCCCA
* * *
18974212 ATGAAGAAAAATGCGGCACCAGCACATGCCTGAGCGTAG-ACTG-G-GAATG-AA-CTC-T-GT-
703 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCA-TGTGCG-ATGCAACCTCGTCGTC
*
18974269 ATGCGTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCTACGAAACGAGCGTGCAGGCGCT
766 AT-CGTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCT
18974333 CAGCCGGCCAGAAGGGGC-AGGATACGC-AAGCC
829 CAGCCGGCCAG-A-GGGCTAGGATAC-CTAAGCC
* * * * ** *
18974365 GGGGATCGGTCGCGTCCCCTTCTGCGTGCTGCCAATCCTACTGCCACAACCCTCGATCCGGTCTG
1 GGGGATCGGTCGGGTCCCC-TCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTG
*
18974430 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA-ACGGGTGGGCGGGC
65 ATCTTAGA-TGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGGCGGGC
* *
18974494 ACTATGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
129 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
18974559 CACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGGTCCCT
194 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
18974624 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTGAAACT
259 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * *
18974689 TTTTGTTGTTTGGGATTTTTCAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACAT
324 TTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAG-TTTTGCCCCAAACTTGGTAGACGT
*
18974754 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTT
388 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTT
*
18974819 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTA
453 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
18974884 AAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
518 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA-GGATAAGGGGCCAATA
*
18974949 TAAGGGCCAAGTACCCA-CACCCATCGCACATCAAT-TGCGCACACCCCCCCCGGCCCCCGCGAT
582 TAAGGGCCAAGTA-CCAGCACCCATCGCACATC-ATGTGCGCACA-CCCCCCCGGCCCCCTCGAT
* * * * * *
18975012 CGCCAGAACCCGAACGCCGCCGATCAGGTTCT-C-C---G----G-CGATGGTGCCTCGACGAAG
644 CGCCGGAACCCAAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCCCAACGAAG
* * * *
18975067 AAAAATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTACTGCTGCAACCCTCGATCTGGTCCGA
709 AAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGC-GATGCAA-CCTCG-TC--GT-C-A
*
18975132 TCTTAGACTGGGAATGAACTTCGTATGC
767 TCGTAGACTGGGAATGAACTTCGTATGC
18975160 TTAGACGGGC
Statistics
Matches: 1474, Mismatches: 138, Indels: 109
0.86 0.08 0.06
Matches are distributed among these distances:
849 47 0.03
850 2 0.00
851 2 0.00
852 3 0.00
854 4 0.00
856 114 0.08
857 252 0.17
858 47 0.03
859 53 0.04
860 50 0.03
861 27 0.02
862 8 0.01
863 63 0.04
864 27 0.02
865 83 0.06
866 3 0.00
868 1 0.00
870 3 0.00
872 11 0.01
873 2 0.00
874 6 0.00
875 217 0.15
876 216 0.15
877 116 0.08
878 117 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (859 bp):
GGGGATCGGTCGGGTCCCCTCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGA
TCTTAGATGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTGTGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGATAAGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGCCGGA
ACCCAAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCTAGCATGTGCGATGCAACCTCGTCGTCATCGTAGACTGGGAA
TGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGCT
AGGATACCTAAGCC
Found at i:18975877 original size:26 final size:26
Alignment explanation
Indices: 18975841--18975892 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18975831 TCTGATCTTC
*
18975841 GACTGGGAATGAACTCCGTATGCCTA
1 GACTGAGAATGAACTCCGTATGCCTA
18975867 GACTGAGAATGAACTCCGTATGCCTA
1 GACTGAGAATGAACTCCGTATGCCTA
18975893 AGTTAACCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (26 bp):
GACTGAGAATGAACTCCGTATGCCTA
Found at i:18976766 original size:26 final size:26
Alignment explanation
Indices: 18976714--18976766 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18976704 CCGGTCTGAT
*
18976714 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGAATG
* *
18976740 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGAAATGAACTCCGAATG
18976766 C
1 C
18976767 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGAATG
Found at i:18977636 original size:26 final size:26
Alignment explanation
Indices: 18977606--18977658 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18977596 CCATTTTGAT
18977606 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18977632 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18977658 C
1 C
18977659 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18978538 original size:26 final size:26
Alignment explanation
Indices: 18978509--18978561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18978499 CCGGTCCGAT
*
18978509 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18978535 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18978561 C
1 C
18978562 CTAAGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18978972 original size:899 final size:894
Alignment explanation
Indices: 18975172--18980007 Score: 6050
Period size: 891 Copynumber: 5.4 Consensus size: 894
18975162 AGACGGGCGG
* * *
18975172 GCGGGCGGGCGGACGGGCACTACGCCAGCC-GAAGAGACGGGATGCGCAAGCCGTGGATTGATAG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * *
18975236 GGTGGTTGGTGAGTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
65 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * * *
18975301 AATTCATACAGTGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATT
130 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
18975366 TTTCATGATTTTAGAAACTTTTTGTGGTTCGGGATTTTTTAAAA-TTTTTTCAGAAGGCGTTTTG
195 TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGA-AAGG-ATTTTG
* * * * * *
18975430 GCCCCAAACTTGGTACACGTGATCCTTGTAATTTTGTTCGCAGGCACAAAAAAATTCAGCAAAAA
258 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
18975495 ACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTAAGACACTTTAATGG
323 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
18975559 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
388 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
* *
18975624 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATCTGCGCACACC
453 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
18975689 CCCCGGCCCCCTTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACG
518 CCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTC-CGCGATG--CCGGCG
* * * ** *
18975754 ATGGTGCCCCAGCCAAGAAAAATGCGGCAGCAGCACATG-CTCGAGCCCAGCATGTGCTGCTACG
579 ATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCA
* * * * *
18975818 ACCCTCGATCTGGTCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAGACTGAGAATGAACTC
643 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * *
18975883 CGTATGCCTAAGT-TAACCCATGAAACGAGCTTGCGGGCGCTCAGCCGGCCAGAGAGGTGGGATA
708 CGTATGCCTAAGTCT-ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * *
18975947 CGCAAGCTGGGGATCGGTTGGGT-CCCC-CT-C-TG----C-ATGCTA---CCACAACCCTCACT
772 CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTTAGT
* * *
18976000 CCGATCTAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGA
837 CCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
18976058 GCGAGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCGATAGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
18976123 GTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * *
18976188 ATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATCGCAAGATGACTCGTTTTCTATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
*** ** *
18976253 TTGGTGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAA-GACGTTTTGG
196 TTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGA--TTTTGG
* * * *
18976317 CCCCAAACTTGGTAGACATTATCCTTGTATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAG
259 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * **
18976382 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATGAA
324 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
18976447 TACTGGCAGTAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
389 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* *
18976512 GAGGGATAAGGGGCCAATATAAGGGCCAAGCACCCA-CACCCATCGCACATCATGTGCGCACACC
454 GAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCGCACA-C
* ** *
18976576 CCCCCGGGCCCCCTGATCACCGGAACCCTAATGCCG-TCGGTCAGGTTCT-C-CGA------CGA
517 CCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGCGATGCCGGCGA
* ** * * *
18976632 TGGTGCCCGGGCAAAGAAAAATGCGAG-ACCAGCACATGGGTGTGCCCAGCATGTACTGCCGTAA
580 TGGTGCCCCGGCAAAGAAAAATGCG-GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA
* *
18976696 CCCTCGGTCCGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT
644 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * **
18976761 GAATGCCTAAGTCAACCCATACAAAACGAGCGTGCGGGCGCTCCGTTGGCCAGAGGGGCGGGATG
709 GTATGCCTAAGTCTACCC--ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* ** * * * * *
18976826 TGCAAGCCGGGGATCGGTCAAGT-CCCCTTTGCGTGCTGCTGATCCTACTGCCGCAACCCTTGGT
772 CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTTAGT
* * * * *
18976890 CTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCGACGAAACAA
837 CCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
18976948 GCGGGCAGGCGGGTGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
1 GC--G--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
18977013 TAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATATCTGTGTGCCAATGCCATTTTTATGGCTT
62 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * *
18977078 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCCTGGCAACACGACTCGTTTTCT
127 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
18977143 ATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTT-AGATGGAGTT
192 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGA-AAGGA-TT
* * *
18977207 TTGGCCCCAAACTTGGTAGACATGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
255 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* * *
18977272 AAAACTCGAATTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAA
320 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * ** * *
18977337 TGGCTACTAGCAACAAACCTGTAAAATCTCAAACGCTCTTTAAGAAGGTGTGACTTCTCGAGGTT
385 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* *
18977402 TGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCACATGATGTGC-CAC
450 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
18977466 ACCCCCCGGCCCCCCCGATCATCGGAACCCAAATGCCACCGGTCAGG-T-T---C--T-CCGGCG
515 ACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGCGATGCCGGCG
* * * * **
18977523 ATGGTGCCTCGGCAAAGAGAAATGCGGCACCAGCACATGCCTAAGCCCAACATGTGCTGAAGCAA
579 ATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA
* ** * *
18977588 CCCTTGGTCCATTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
644 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * *
18977653 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACGAAAGGGGCAGGATGCG
709 GTATGCCTAAGTCTACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * *** *
18977718 CAAGCCGAGGATCGGTTGGGTCCCCCTCAATGTGCTACCGATCCTACTGCCACAACCCTCAGTCC
774 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTTAGTCC
* * ** *
18977783 GATCCAATCTTAGACTGGGAATGAACTCTATATACCTACA-CCAACCGACGAAACGA
839 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTA-AGCCAACCGACGAAACGA
*
18977839 GCGGGCGAGAGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
1 GCGGGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
18977904 TTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGATT
62 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
*
18977969 GTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCT
127 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
18978034 ATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTCTCGAAAGGATTTT
192 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGATTTT
* * * * * *
18978099 TGCACCCAAACTTGGTGGATGTGACCCTTGTGTTTTTTTTGGCATGGACAAAAAAATTCAGCTAA
257 GGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
*
18978164 AAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
321 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
18978229 GGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTT
386 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
*
18978294 GATGAGGGATA-GCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
451 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
**
18978358 CCCCCCAGGCCCCTCCGATCGTCGGAACCCCAATATCGCTGGTCAGGTTCTCCGACGATGCTTCG
516 CCCCCC-GGCCCC-CCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG-CGATGC--CG
* * * ** * * * * * **
18978423 GCGATGGTGCCCTGGCGAAGAAAATTTTGGCACGAGCACAAGCCCGAGCCCAACATTTGCTGTTG
576 GCGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCG
* *
18978488 CAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
641 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
18978553 TCCGTATGCCTAAGTCTACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCTAGAGGGGCGGGAT
706 TCCGTATGCCTAAGTCTACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * * * ** * *
18978618 GCGCAAGTCGGGGATCGATCGGGTCCCCCTCTACATGCTGCGGATCATGCTGCTGCAATCCTTGG
771 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTTAG
* *
18978683 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA
836 TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
18978742 GCGGGCGGGCGGGCTGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
18978807 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAT
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* *
18978872 ATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
18978937 TTTACGATTTTTGAAAGTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGAATTTTTGGC
196 TTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGA-TTTTGGC
* *
18979002 CCCAAACTTGGTAGACGTGATCCTTGTATTTTGTTTGGCATGCACAAAAAAATTCAGCTAAAAAA
260 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
18979067 TCGAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCT
325 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
18979132 ACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
390 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* * * *
18979197 AGGTATAGGGGGCCAATATAAGGGGCAAGTACCAGCACCTATAGCACATCATGTGCGCACACCCC
455 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* *
18979262 CCCAGCCCCCCCGATCGTCGGAATCCCAATGCCG-TCGGTCAGGTTCTCCGGCGATGCACCGGCG
519 CCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCC-GCGATG--CCGGCG
*** * * * * *
18979326 ATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGTCTGAGCCTAGCATCTACTGCCGCAA
579 ATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA
** * * ** *
18979391 CCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTATGTATGCTTAGACTGGGAATGAACTCA
644 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * ** * * *
18979456 ATTTGCCTAAGT-TAACCCACGAAACGAGAATGCGGGTGCTCAGTCGGCCATAGGGGCGGGATGC
709 GTATGCCTAAGTCT-ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * * *
18979520 GTAAGTCGGGGATCAGTCGGGTCACACTCTGCGTGCTACCGATCCTGCTACCACAACCCTTAGTT
773 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTTAGTC
* *
18979585 TGGTCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA
838 CGGT-CTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
18979642 ----GCGAGCGGGCAGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGAAT-GATAG
1 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG-ATCGATAG
* * * * *
18979702 GGTGGCAGGTGGGTTTAGACACATCTTCATATTTTTGCATGCCAATGCGATTTTTATGGCTTGTA
65 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
18979767 AATTCATACAATGGTCCCTTAAGCCTTCAC-----G-----T-----GA--A---G---------
130 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* ** * *
18979803 TTTCACGATTTTTGAAACTTTTTGCTGTTCTAGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGG
195 TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTT-GAAAGGATTTTGG
* *
18979868 CCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTCGGCATGCACAAAAAAATTCAGCTAAAAA
259 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
18979933 CTTGAAGTGTACAAGATTATGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
324 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
18979998 TACTGGCAGC
389 TACTGGCAGC
18980008 TAAAAACTCG
Statistics
Matches: 3445, Mismatches: 431, Indels: 167
0.85 0.11 0.04
Matches are distributed among these distances:
867 183 0.05
868 4 0.00
876 1 0.00
877 125 0.04
878 2 0.00
879 59 0.02
880 1 0.00
881 3 0.00
882 2 0.00
885 4 0.00
886 314 0.09
887 152 0.04
888 40 0.01
889 9 0.00
890 168 0.05
891 507 0.15
892 197 0.06
893 8 0.00
894 453 0.13
895 2 0.00
896 139 0.04
897 2 0.00
898 1 0.00
899 418 0.12
900 360 0.10
901 16 0.00
902 2 0.00
903 273 0.08
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (894 bp):
GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGATTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CGGCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGCGATGCCGGCGATGGTGC
CCCGGCAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGG
TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCTACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
GGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTTAGTCCGGTCTAA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
Found at i:18980724 original size:26 final size:26
Alignment explanation
Indices: 18980673--18980725 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18980663 CCGGTCCGAT
* *
18980673 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18980699 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18980725 C
1 C
18980726 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18983316 original size:26 final size:26
Alignment explanation
Indices: 18983287--18983339 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18983277 CCGGTCTGAT
*
18983287 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18983313 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18983339 C
1 C
18983340 CTAAGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18984209 original size:26 final size:26
Alignment explanation
Indices: 18984180--18984232 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18984170 CCGGTCCGAT
*
18984180 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18984206 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18984232 C
1 C
18984233 CTAAGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18984640 original size:894 final size:895
Alignment explanation
Indices: 18982626--18988160 Score: 6978
Period size: 894 Copynumber: 6.2 Consensus size: 895
18982616 CAACGGGTGG
* * * ** *
18982626 GTGGGCGGACGAGCACTACGTCGGGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTAG
1 GTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
18982690 TAGGTGGGTTTAGGCACATCTCCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAACTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * **
18982755 ACACAATGGTCCCTTAAGCCTTCACCTGAGGTTTCATGGCAAGACGACTTTTTTTCTATTTTTCA
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * ** * * *
18982820 TGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAATTTTTTTCGGAAGGATTTTTGGCCCCA
196 CGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * * * * * *
18982885 AACTTGGCAGACAT-ATCCTTTTATTTTGGTTGGCATGCATAAAAACATTCAACTAAAAACTCGA
261 AACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
** * *
18982949 AGTGTACAAGATTTTGTGATGATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTG
326 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
18983014 GCAGCAAACTTGTAAATTCTCAAATGC-CTTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGG
391 GCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * *
18983078 GATAGGAGGCCAATATAAGGGCCAAGTACCAGCACACATTGCACATCATGTGCGCACACCCCCCC
455 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
* * * * * *
18983143 GGCCCCCCCTATCGTCAGAACCCTAATGCCGTCGGTCAGGTTCTGCGGTGATGCTCCGACGATGG
519 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGG
* * * * * * * *
18983208 TACCCCGACGAAGAAAAATGCGACACTAGCATATGCCCGATCCCAACATGTGCTGCAACAACCCT
584 TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
* *
18983273 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTAT
649 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
18983338 GCCTAAGTCTACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAG
714 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG
* * * *
18983403 TCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCTGATCGTGCTGCTGCAATCCTTGGTCCGGTC
779 CCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCTGATCCTGCTGCTGCAACCCTTGATCCGGTC
18983468 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
844 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
18983520 GTGGGCGGGCGAGCACTA-GCCGACCAGAGAGACGGGATGCGTAAGCCGTGGAT-GATAGGGTGG
1 GTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* **
18983583 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATTTCTTGTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
18983648 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
18983713 TGGTTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTCGACCCCA
196 CGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * *
18983778 AACATGGTTGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTTAGCTAAAAACTCGA
261 AACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
18983843 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
326 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
18983908 GCAACAAACCTGTAAAATCTCAAATGCTCTTAAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
391 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
18983973 ATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCG
456 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCG
* ** *
18984037 GCCCCCCCGATCGTCGGAACCCGAATATCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGT
520 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGT
* * * * * * *
18984102 GCCCTGGCGAAGAAAAATTCGGCACCAGCATAAGCCCGAGCCCAACATTTGCTGCCGCAACCCTC
585 GCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTC
* *
18984167 GATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
650 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
18984232 CCTAAGTCTACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCAGGATGCGCAAGT
715 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGC
* * * * *
18984297 CGGGGATCGATCGGATCCCCCTCTGCATGCTGCTGATCATGCTGCTGCAATCCTTGGTCCAGTCT
780 CGGGGATCGATCGGGTCCCCCTCTGCATGCTGCTGATCCTGCTGCTGCAACCCTTGATCCGGTCT
*
18984362 GATCTTAGACTGGGAACGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
845 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
*
18984413 GTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGGAT-GATAGGGTGG
1 GTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* **
18984477 TAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATTTCTTGTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
18984542 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * ** **
18984607 TGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTCACCCC
196 CGATTTTTAAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCC
* * ** * *
18984672 CAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGTGTGCGCAAAAAAATCCAGCTAAAAACTC
259 CAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
18984737 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
324 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
18984802 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
389 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
18984867 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
454 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * * * *
18984932 GGCTCCGCTGATCGTCGGATCCCTAATGCCG-C---CA---T-T-C-AAG-TTCTCCAACGATGG
519 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGG
* ** * *
18984986 TGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCACAA-CC-
584 TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
*
18985049 C--T-C-G---G---TT---C--GG--T---CT--G-AT-CTGAGACTGGGAATGAACTCCGTAT
649 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
18985090 GCCTAAGTCAACCAACGAAACGGGCATGCGGGCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAG
714 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG
* * * * *
18985155 CCAGGGATCGACCGGGTCCCCCTCTGCGTGCTG-TCGATCCTGCTACTGCAACCCTCGATCCGGT
779 CCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCT-GATCCTGCTGCTGCAACCCTTGATCCGGT
* *
18985219 -TCGATCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCTAACCGATGAAACGA
843 CT-GATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
18985272 GCAGGCAGACGGGCAGGCGGGCACTATGCC-AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
1 G-TGG--G-C--G--GGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
18985336 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGGT
57 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * * *
18985401 TGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATCTTC
122 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
18985466 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTCTTCGGAAGGAGTT
187 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * * *
18985531 TTGGCCCCAAACTTGGTTGACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAAACATTCAGCTT
252 TTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *** *
18985596 AAAACTCGAACTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTTGTCATTTCAGATACTTTAA
317 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
18985661 TGGCTACTGGCAGCAAACCTATAAACTCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTT
382 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* *
18985726 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCA-CGCACATCATGTGCGAAC
447 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * *
18985790 ACCCCCTCGGACCCCTCGATTGACGGAACCCTAATGCCGCCGGTCA-G------G-T--T-CTCC
512 ACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC
* * * * *
18985844 GACGATGGTGCGCCGGTGAAGAAAAATGCAGCACCAGCACATGCCAGAGCCCAGCATGTGCTGTC
576 GACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
**
18985909 GTAACCCTTGGTTCAGTTCGATCTTAGTCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
641 ACAACCC-----TC-G---G-TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAA
* *
18985974 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGTGTGCGG
680 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * *
18986039 GCGCTCAGCCGACCA-AGGGGTGGGATGCACAAGCCGGGGATCGA-CTGGGTCCCCCTC-ACTAT
745 GCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATC-GGGTCCCCCTCTGC-AT
* * * * **
18986101 GCTGCCGATCCTGTTGCTGCAACCCTCGATTCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
808 GCTGCTGATCCTGCTGCTGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
18986166 GCCTAAGCCAACCGACGAAACGA
873 GCCTAAGCCAACCGACGAAACGA
* ** * * * *
18986189 GCGGATGGGTGGGCACTACGCCGGCCAAAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGG
1 GTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * ** *
18986254 TTGGTGGGTTTAGGCACATCTTCATATCTCTGTGTGCCAACACCATTTTTATGGCTTGTAAATGC
66 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
18986319 ATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTTTCA
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* ** *
18986384 CAATTTTTAAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTC-GAAGGAGTTTTGGCCCCA
196 CGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
18986448 AACATGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGA
261 AACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
18986513 AGTGTACAAGATTTTCG-GACCATTT----CAA-TGTCCCCATTTCAGACACTTTAATGGCTACT
326 AGTGTACAAGATTTT-GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
18986572 GGCAGCAAACCTATAAAATCTTAAATGCT-TTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
390 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
18986636 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGTA-ACCCC
454 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACACCCC
* * * *
18986700 CCGGCCCCGCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGAT
517 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGAT
* * ** * * ** *
18986765 GGTGCCCCGGTGAAGAAAAATGCCGTGCCAGCACTTGCCCGAGACCAGCATGTGCTGCTGCAACT
582 GGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACC
** *
18986830 CTCGGTCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGT
647 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
18986895 ATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCG-TGCAACCGGCAAGAGGGGCGAGATGCGC
712 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CAGCCGGCCAGAGGGGCGGGATGCAC
** * * *
18986959 AAGCCGATGATCGATCTGGTCCCCCTCTGCGA-GCTGCCGATCCTGCT-ATCGCAACCCTCTG-T
776 AAGCCGGGGATCGATCGGGTCCCCCTCTGC-ATGCTGCTGATCCTGCTGCT-GCAACCCT-TGAT
* * *
18987021 CTGGT-TGGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAACTGACGAAACGA
838 CCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * *
18987079 G-CGACGAGCGGGCACTACGCCGGA-CAGAGAGACAGGATACGCAAGCTGTGGATCGATAGGGCG
1 GTGGGCGGGCGGGCACTACGCC-GACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
18987142 GTAGGTGGGCTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTTTGGCTTGTAAATT
65 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
18987207 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
130 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
18987272 ACGATTTTCAAAATTTTTTACGGTTCGAGATTTTTTAAAATTTTTAT-GGAAGGAGTTTTGGCCC
195 ACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT-TCGGAAGGAGTTTTGGCCC
*
18987336 CAAACATGGTAGACGTGATCCTTGTATTTTT-TTGGCGTGCACAAAAAAATTCAGCTAAAAACTC
259 CAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* ** *
18987400 GAAGTGTACATGATTTTGTGACCATTTTTTAAAAAGTGTCCACATTTCAGACACTTTAATGGCTA
324 GAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
18987465 TTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
388 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* *
18987530 AGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCC
453 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * * * *
18987595 CCGG-CCCCCCGATCGCCGCAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGAT
517 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGAT
* *
18987659 GGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACC
582 GGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACC
* * * * * * * *
18987724 TTGGGTCTGATCCGATCTTATACTAGGAACGAACTCCGTATGCTTAGACTGCGAATGAACTCCGT
647 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * **
18987789 ATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAAGATGCACA
712 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACA
** * *
18987854 AGCTAGGGATCGATCGGGTCCCCCTCT--ATG-TGCTATCGATCCTGCTGCCT-TATCCCTTGAT
777 AGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGC--T-GATCCTGCTG-CTGCAACCCTTGAT
* * ** * *
18987915 CCAGTTTGATCTTAGACTAAGAATGAACTGCGTATGCCTAAGCCAACCGACGTAACGAGCAGGC
838 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--GA
* * * * *
18987979 GGGCGGACGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGT
1 GTG-GG-CGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
18988044 GGGAGGTGGGTTTAGGCACATCTTCATATTT-TGGCATGCCAATGCCATTTTTATGGCTTGTAAA
64 GGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCGTGCCAATGCCATTTTTATGGCTTGTAAA
*
18988108 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTC
128 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
18988161 TTTGAGAGGC
Statistics
Matches: 4062, Mismatches: 437, Indels: 275
0.85 0.09 0.06
Matches are distributed among these distances:
858 3 0.00
859 178 0.04
860 4 0.00
861 1 0.00
862 1 0.00
863 3 0.00
865 24 0.01
866 303 0.07
867 73 0.02
868 156 0.04
870 2 0.00
873 3 0.00
876 1 0.00
879 1 0.00
880 2 0.00
881 1 0.00
883 1 0.00
884 2 0.00
885 61 0.02
886 3 0.00
887 1 0.00
888 3 0.00
889 353 0.09
890 162 0.04
891 12 0.00
892 8 0.00
893 642 0.16
894 682 0.17
895 179 0.04
896 222 0.05
897 55 0.01
898 1 0.00
899 1 0.00
900 3 0.00
902 6 0.00
903 278 0.07
904 51 0.01
905 9 0.00
906 2 0.00
907 1 0.00
908 97 0.02
909 212 0.05
910 2 0.00
911 3 0.00
912 1 0.00
914 3 0.00
915 64 0.02
916 5 0.00
917 117 0.03
918 64 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
CGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
AACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG
CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCG
GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
GGGGATCGATCGGGTCCCCCTCTGCATGCTGCTGATCCTGCTGCTGCAACCCTTGATCCGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
Found at i:18985967 original size:26 final size:26
Alignment explanation
Indices: 18985931--18986009 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
18985921 TCAGTTCGAT
*
18985931 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18985957 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18985983 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18986009 C
1 C
18986010 CTAACTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18986875 original size:26 final size:26
Alignment explanation
Indices: 18986846--18986898 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18986836 CCTATCCGAT
*
18986846 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18986872 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18986898 C
1 C
18986899 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18987163 original size:889 final size:891
Alignment explanation
Indices: 18985068--18988160 Score: 3867
Period size: 889 Copynumber: 3.4 Consensus size: 891
18985058 GTCTGATCTG
* * * *
18985068 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGGGCATGCGGGCGCTCATCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
18985133 CCAGAGGGGCGGGATGCGCAAGCC-AGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
66 CCAGAGGGGCGAGATGCACAAGCCGAGGGATCGATCGGGTCCCCCTCTACGAGCTGCCGATCCTG
*
18985197 CTA-CTGCAACCCTCGATCCGGTTCGATCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCTAA
131 CTATCTGCAACCCTCGATCCGGTTCGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18985260 CCGATGAAACGAGCAGGCAGACGGGCAGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGAGC--G--GAC--G-A-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
18985325 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT-TGTGCATGCCAATGCC
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCTGTG-ATGCCAATGCC
* *
18985389 ATTTTTATGGGTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
18985454 TGACTCATCTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTCT
381 CGACTCGT-TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
* * *
18985519 TCGGAAGGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTGTTTTTGTTGGCATGCACAAA
445 TC-GAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * ***
18985584 AACATTCAGCTTAAAACTCGAACTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTTGTCATTT
509 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT---AAAAGTGTCCACATTT
* * *
18985649 CAGATACTTTAATGGCTACTGGCAGCAAACCTATAAACTCTCAAATGCTCTTTAAGGGAGTGTGA
571 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
18985714 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCA-CGCACA
636 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18985778 TCATGT--GCGAACACCCCCTCGGACCCCTCGATTGACGGAACCCTAATGCCGCCGGTCAGGTTC
701 TCATGTGCGCGAA-ACCCCC-CGG-CCCCCCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTC
* *
18985841 TCC-GA-------CGATGGTGCGCCGGTGAAGAAAAATGCAGCACCAGCACATGCCAGAGCCCAG
763 TCCGGATGCTCCGCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
* *
18985898 CATGTGCTG-TCGTAACCCTTGGTTCAGTTCGATCTTAGTCTGGGAATGAACTCCGTATGCTTAG
828 CATGTGCTGCT-GCAA--C-----TC--TTCG------GTC-----CTG-A-TCCG-AT-CTTAG
18985962 ACTGGGAATGAACTCCGTATGCTT
868 ACTGGGAATGAACTCCGTATGCTT
* * *
18985986 AGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGA
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * *
18986051 CCA-AGGGGTGGGATGCACAAGCCG-GGGATCGA-CTGGGTCCCCCTC-ACTATGCTGCCGATCC
66 CCAGAGGGGCGAGATGCACAAGCCGAGGGATCGATC-GGGTCCCCCTCTACGA-GCTGCCGATCC
* * *
18986112 TG-T-TGCTGCAACCCTCGATTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 TGCTAT-CTGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
18986175 AACCGACGAAACGAGCGGATGGGTGGGCACTACGCCGGCCAAAGAGACGGGATTCGCAAGCCGTG
193 AACCGACGAAACGAGCGGACGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* **
18986240 GATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATCTCTGTG-TGCCAACACCATTTTT
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TCTGTGATGCCAATGCCATTTTT
* *
18986304 ATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
18986369 GTTTCCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTCGAAG
387 GTTT-CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAG
* *
18986434 GAGTTTTGGCCCCAAACATGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTT
451 GAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
18986499 AGCTAAAAACTCGAAGTGTACAAGATTTTCG-GACCATTT-CAA-TGTCCCCATTTCAGACACTT
516 AGCTAAAAACTCGAAGTGTACAAGATTTT-GTGACCATTTAAAAGTGTCCACATTTCAGACACTT
*
18986561 TAATGGCTACTGGCAGCAAACCTATAAAATCTTAAATGCT-TTTCAAGGGGGTGTGAGTTCTCGA
580 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGA
18986625 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
644 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
18986690 GCGTAACCCCCCGGCCCCGCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATG
709 GCGAAACCCCCCGGCCCC-CCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCC-G-GATG
* ** * *
18986755 CTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCCGTGCCAGCACTTGCCCGAGACCAGCATGTGC
771 CTCC-GCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
18986820 TGCTGCAACTC-TCGGTCCT-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
835 TGCTGCAACTCTTCGGTCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
18986875 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCG-TGCAACCG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CAGCCG
* * * * *
18986939 GCAAGAGGGGCGAGATGCGCAAGCCGA-TGATCGATCTGGTCCCCCTCTGCGAGCTGCCGATCCT
65 GCCAGAGGGGCGAGATGCACAAGCCGAGGGATCGATCGGGTCCCCCTCTACGAGCTGCCGATCCT
* * *
18987003 GCTATC-GCAACCCTCTG-TCTGGTTGGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCA
130 GCTATCTGCAACCCTC-GATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18987066 ACTGACGAAACGAGC-GACGAGCGGGCACTACGCCGGACAGAGAGACAGGATACGCAAGCTGTGG
194 ACCGACGAAACGAGCGGACGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * ** *
18987130 ATCGATAGGGCGGTAGGTGGGCTTAGGCACATCTTCATATTTCTACG-TGCCAATGCCATTTTTT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTGTGATGCCAATGCCATTTTTA
18987194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
18987259 TTTTCTATTTTTCACGATTTTCAAAATTTTTTACGGTTCGAGATTTTTTAAAATTTTTATGGAAG
388 -TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT-TCGAAG
*
18987324 GAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTT-TTGGCGTGCACAAAAAAATTC
451 GAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
18987388 AGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTTTTAAAAAGTGTCCACATTTCAGACA
516 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA---TTT-AAAAGTGTCCACATTTCAGACA
* * *
18987453 CTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
577 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
18987518 AAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGA
642 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
18987583 GCGC-ACACCCCCCCGGCCCCCCGATCGCCGCAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
707 GCGCGA-AACCCCCCGGCCCCCCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCCG--GA
* * * *
18987647 TGCTCCGATGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
769 TGCTCCG-CGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGT
* ** * * * *
18987712 GCTACCACAAC-CTTGGGT-CTGATCCGATCTTATACTAGGAACGAACTCCGTATGCTT
833 GCTGCTGCAACTCTTCGGTCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
18987769 AGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * **
18987834 CCAGAGGGGCAAGATGCACAAG-CTAGGGATCGATCGGGTCCCCCTCTATGTGCTATCGATCCTG
66 CCAGAGGGGCGAGATGCACAAGCCGAGGGATCGATCGGGTCCCCCTCTACGAGCTGCCGATCCTG
** * * * * * ** *
18987898 CTGCCT-TATCCCTTGATCCAGTTTGATCTTAGACTAAGAATGAACTGCGTATGCCTAAGCCAAC
131 CTATCTGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
18987962 CGACGTAACGAGCAGGCGGGCGGACGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGTAAG
196 CGACG--A--A--A--CGAGCGGACGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
18988027 CCGTGGATCGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTTG-GCATGCCAATGCCA
253 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCTGTG-ATGCCAATGCCA
*
18988091 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
18988156 GACTC
382 GACTC
18988161 TTTGAGAGGC
Statistics
Matches: 1915, Mismatches: 194, Indels: 147
0.85 0.09 0.07
Matches are distributed among these distances:
888 2 0.00
889 349 0.18
890 163 0.09
891 10 0.01
892 5 0.00
893 8 0.00
894 302 0.16
895 153 0.08
896 4 0.00
898 1 0.00
899 3 0.00
900 1 0.00
901 1 0.00
902 10 0.01
903 282 0.15
904 51 0.03
905 9 0.00
906 4 0.00
907 2 0.00
908 101 0.05
909 205 0.11
910 1 0.00
911 5 0.00
913 3 0.00
915 58 0.03
916 4 0.00
917 116 0.06
918 62 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (891 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
CCAGAGGGGCGAGATGCACAAGCCGAGGGATCGATCGGGTCCCCCTCTACGAGCTGCCGATCCTG
CTATCTGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGACGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCTGTGATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAGGAGTT
TTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAGTGTCCACATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGAAAC
CCCCCGGCCCCCCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGATGCTCCGCGATG
GTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACTC
TTCGGTCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
Found at i:18988431 original size:26 final size:26
Alignment explanation
Indices: 18988402--18988454 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18988392 CCGGTCCAAT
*
18988402 CTTAGACTGGGATTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
18988428 CTTAGATTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18988454 C
1 C
18988455 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18989322 original size:26 final size:26
Alignment explanation
Indices: 18989293--18989345 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18989283 CCGGTCCGAT
*
18989293 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18989319 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18989345 C
1 C
18989346 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18990226 original size:26 final size:26
Alignment explanation
Indices: 18990197--18990249 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18990187 CCGGTCCAAT
*
18990197 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18990223 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18990249 C
1 C
18990250 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18990590 original size:899 final size:892
Alignment explanation
Indices: 18988175--18994714 Score: 8593
Period size: 899 Copynumber: 7.4 Consensus size: 892
18988165 AGAGGCTGTA
* * *
18988175 AGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGGACCAGCACCC-T-TCAC
1 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18988238 ATCATGTGTGCACACCCCCCCGACCCCCCGATCGCCAGAACCCTAATGCCGCCGGTCAGGTTCTC
66 ATCATGTGCGCACACCCCCTC--CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
18988303 CGACAATGCTCTGATGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCA
129 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * * * *
18988368 GCATGTGCTGTCGTAACCCTCGATCCGGTCCAATCTTAGACTGGGATTGAACTCCATATGCTTAG
194 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
18988433 ATTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTTAGCCGACC
259 ACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* ** * * ** * *
18988498 AGAGGGGCGGGATGCGTAAGCCGAAGATC-AGTCGGGTCCCCCTCTGCGTGCTACCGATCTTGCA
324 AGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTACGTGCTGTCGATCCTGCT
* * * **
18988562 GCCGCAACCCTTGGTCCGAG-CTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATTG
388 GCCGCAACCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
18988626 ACAAAATGAACGGGTAGGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCC
452 AC--GA--AAC--G-A-GCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18988691 GTTGATCGATAGGGTGGTTGGTGGGTTTAGGCACATTTTCATATTTCT--ATGTACCAATGCCAT
509 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--CCAATGCCAT
* *
18988754 TTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
572 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
18988819 ACTCGTTTTCTATTTTTGACGATTTTAGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTT-
637 ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * ** *
18988883 GGAAGTACTTTTGGCAGCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
702 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
18988948 AGTTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCA
767 A-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
* * *
18989013 GACATTTTAATGGCTACTGGCCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTG
831 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18989075 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCAC
1 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18989140 ATCATGTGCGCACACCCCCTGGCCCCCCCGATCGCCGAAACCCTAATGCCGCAGGTCAAG-T-T-
66 ATCATGTGCGCACACCCCCT--CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
18989202 ---C--T--T-CGATGATGGTGCCCC-AGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
129 CGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* * *
18989258 AGCATGTGCTGCGGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGTATGAACTCCGTATGCTTA
193 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
** * * *
18989323 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGTCGTTCAGCCGGC
258 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
18989388 C-GAAGGGGCGGGATGCGCAAGTCGGGGATTGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGC
323 CAG-AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGC
* ** ** * * *
18989452 TGCTGCAACCCTCGGTCTATTCCAATCTTAGACAGGGAATGAACTCCATATGGCTAAGCCAACCG
387 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
18989517 ACGAAACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGACAGATGGGATGCGCAAGCCGTGG
452 ACGAAACGAGCGGGC----GAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
18989582 ATCAATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
513 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
18989647 GGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
578 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
18989712 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAG
643 TTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAG
** * *
18989777 GAGTTTTGGCCAAAAACTTGGTAGACGTGATCCTTCTATTTTTTTTGGCATGCACAAGAAAATTC
707 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA-AAAATTC
* * *
18989842 AGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGAAAC
771 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
* * *
18989907 TTTAATTGCTACTCGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGGGTGTG
836 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA--GGGGGTGTG
* *
18989966 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCAC
1 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
18990031 ATCATGTGCACACACCCCCTTTCCGCCCCCGGATCACCGGAACACCAATGCCGTCGGTTAGGTTC
66 ATCATGTGCGCACACCCCC--TCC-CCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
**
18990096 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
127 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* *
18990161 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTT
192 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
18990226 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT-AGCCAG
257 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * ** * *
18990290 CCAAAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCAGTATGTGCTGCCGATCCTGC
322 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGC
* * * * * *
18990355 TACTGTAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCG
387 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
18990420 ACAAAACGAGCGGGCGAGCGGGCACTATGCCGGCCAGAGAAACAGGATGCGCAAGCCGTGGATCG
452 ACGAAACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*** *
18990485 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGACT
517 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
18990550 TGTAAAGTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
582 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
18990615 TATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGTAGGAGTT
647 TATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
18990680 TTGGCCCCAAACTTGGAAGACGTGATCCTTATATTTTTGTTGGTATGCACAAAAAAGTTCAGCTA
712 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTA
*
18990745 AAAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA
776 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA
* *
18990810 AGGCTACTGGCAGCAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGTGTG
841 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18990862 AGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
1 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18990927 ATCATGTGCGCACA---CCT--CCCCCGATCGCCAGAACCCCAATGTCGTCAGTCAGGTTCTCCG
66 ATCATGTGCGCACACCCCCTCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * ** *
18990987 GTGATGCTCCGACAATCGTGCCCCGGTGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGC
131 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* * *
18991052 ATGTGCTGCCGTAACTCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
196 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
18991117 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCTGGCGCTCAACCGGCCAG
261 TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * *
18991182 AGGGGCGGGATGCGTAAGCCGGGGATCGACCAGGTCCCCCTCTGCCTGCTGTCAATCCTGCTGCC
326 AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCC
** *
18991247 GCAACCCAT-GGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACG
391 GCAACCC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
*
18991311 -AA--A-----CGAGCGGG-----CG--GG-C-G-G-G-C-GGATGCGCAAGCCATGGATCGATA
455 AAACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
18991355 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGT
520 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
** *
18991420 AAATTCATACAATGGTCCCGCAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
585 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
18991485 TTTTCACGATTATCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT
650 TTTTCACGATTTTCGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * *
18991549 GGTCCCAAACTTGGTAGACAGCG-TCCTTGTATTTTTGTTGGCATCCATAAAAAATTTCAGCTAA
714 GGCCCCAAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAA
*
18991613 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAA
777 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAT
18991678 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
842 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
18991728 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
1 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18991793 ATCATGTGCGCACA---CCT--CCCCCGATTGCCAGAACCCCAATGCCGTCAGTCAGGTTCTCCG
66 ATCATGTGCGCACACCCCCTCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** ** *
18991853 GTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGC
131 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* *
18991918 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATGCTTAGAC
196 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
18991983 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGACAG
261 TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * *
18992048 AGGGGCAGGATGCGCAAGTCAGGGATGGGCCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCC
326 AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCC
*
18992113 GCAACCCTCGGTCTGGT-TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
391 GCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
18992177 AAACGAGTGGGCAGGCAGGCGAGCGGGCACTATGCCGTCCAGAGTGACGGGATGCGCAAGCCGTG
455 AAACGA----GC--G--GGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
18992242 GATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTA
512 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
18992307 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
577 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
18992372 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-ATGATTTTTTTAAATTTCTTCGGAA
642 TTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAA
*
18992436 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATT
706 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATT
* * * * * * * *
18992501 CCGCTAAAAACTCAAACTGAACAAGATTTTGTGACCATTTGAAAAAAGAGTTCCCATTTCAGAAA
770 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
*
18992566 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
835 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18992624 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
1 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18992689 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAAGTTCTC
66 ATCATGTGCGCACA-CCCCC-TCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** * * * *
18992754 C-AGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTTGCACCAACACATGCCAGAGCTC
129 CGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
*
18992818 AGCATGTGCTACCGCAACCCT---T---G---G---TT---C---G---G---TCCG-AT-CTTA
193 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
*
18992857 GACTAGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
258 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
*** * * *
18992922 CA-AGGGGCGGGATGCGCAAGTTAGGGATCGACCGAGTCCCCATC-ACCATGCTGTCGATCCTGC
323 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTA-CGTGCTGTCGATCCTGC
*
18992985 TG-CGCAACCCTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACC
387 TGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18993048 GACGAAATGAGCGGGCGGGCGGGCGGGTTGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGC
451 GACG-AA--A-CGAGCGGGCGAGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
18993113 CGTGGATCGATAGGGCGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
508 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
18993178 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGCTTCATGGCAAGACGA
573 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
18993243 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-T
638 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * *
18993307 GAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATGCTTGTATTTTTGTTGGCATGCATAAAAAA
703 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAA
18993372 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCG-GACCATTTGAAAAAAGTGTCCCCATTTTA
767 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-GTGACCATTTGAAAAAAGTGTCCCCATTTTA
* *
18993436 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGTTCTTTAAGGGGAG-GTG
831 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTG
* * * *
18993498 AGTTCTCGAGGCTTGATGAGGGTTAAGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCAC
1 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18993563 ATCATGTGCGCACACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCTGCCGGCCAGGTTCTC
66 ATCATGTGCGCACACCCCCTC--CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * ** * *
18993628 CGACGATTCTCTGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGCGCCCA
129 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * *
18993693 GCATGTGCTGTCGTAACCGTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
194 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
18993758 ACTGGGAATGAACTCTGTATGCCTAAGTGAAACCACGAAACGAGCGTGCAGGCGCTCAGTCGGCC
259 ACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
** ** * * * * *
18993823 AGAGGGGTAGGATGCATAAGCCGGGGATCGACCGGGTCTCCCTCTATGTGCTTTTGATCCTGCTA
324 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTG
* * * * * * *
18993888 CCGCAACCCTCAGTCTGGTTTGATCTTAGATTGGTAATGAACTCCGTATGCCTAAGTCGACTGAC
389 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
18993953 GAAACAAGCGGGCGGATGGGAGGGCATTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
454 GAAACGAGCGGGC-GA---GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
18994018 CGATGGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
515 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
18994083 CATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
580 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
18994148 TCTATTTTTCACAATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTCTTCGGAAGGAG
645 TCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
* *
18994213 TTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGC
710 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAATTCAGC
18994278 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
774 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
* **
18994343 AATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGCA
839 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
18994397 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
1 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * **
18994462 ATCATGTGCGCACACCCCCCAGCCCCCCCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTC
66 ATCATGTGCGCACA-CCCCC-TCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
18994527 CGGCAATGCTCTGACGATGGTACCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCA
129 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * * * * * * *
18994592 GCATGTACTGTCGTAACCATCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCATATGCTTAG
194 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
18994657 ACTTGGAATGAACTCCGTATGCTTAAGTCTACCCACGAAACGAGCGTTCGGGCACTCA
259 ACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
18994715 TACAATGGTC
Statistics
Matches: 4993, Mismatches: 507, Indels: 281
0.86 0.09 0.05
Matches are distributed among these distances:
865 1 0.00
866 423 0.08
867 359 0.07
868 3 0.00
869 1 0.00
870 1 0.00
871 7 0.00
872 2 0.00
873 9 0.00
874 347 0.07
875 283 0.06
876 57 0.01
877 66 0.01
878 3 0.00
879 6 0.00
880 9 0.00
882 9 0.00
883 6 0.00
884 1 0.00
885 2 0.00
886 2 0.00
887 401 0.08
888 138 0.03
889 165 0.03
890 7 0.00
891 358 0.07
892 8 0.00
893 27 0.01
894 6 0.00
895 359 0.07
896 172 0.03
897 5 0.00
898 401 0.08
899 658 0.13
900 130 0.03
901 52 0.01
902 111 0.02
903 238 0.05
904 159 0.03
905 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCTCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCC
GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
Found at i:18991113 original size:26 final size:26
Alignment explanation
Indices: 18991084--18991136 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18991074 TCGGTCCGAT
18991084 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18991110 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18991136 C
1 C
18991137 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18991979 original size:26 final size:26
Alignment explanation
Indices: 18991950--18992002 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18991940 CTGGTCCGAT
18991950 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
18991976 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
18992002 C
1 C
18992003 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:18993756 original size:26 final size:26
Alignment explanation
Indices: 18993727--18993779 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18993717 CCGGTCTGAT
18993727 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18993753 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18993779 C
1 C
18993780 CTAAGTGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18994664 original size:26 final size:26
Alignment explanation
Indices: 18994626--18994681 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18994616 CTGATCTGAT
18994626 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18994652 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18994678 CTTA
1 CTTA
18994682 AGTCTACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18996167 original size:26 final size:26
Alignment explanation
Indices: 18996123--18996201 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
18996113 CTGGTCTAAT
* **
18996123 CTTAGACTAGAAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
18996149 CTTAGACTGGGAATAAACTCCGTCTG
1 CTTAGACTAGGAATGAACTCCGTATG
18996175 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18996201 C
1 C
18996202 CTAAGTCAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18998136 original size:26 final size:26
Alignment explanation
Indices: 18998097--18998149 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18998087 CCGATCTGAT
* *
18998097 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACCGAGAATGAACTCT-GTATG
18998123 CTTAGACCGAGAATGAACTCTGTATG
1 CTTAGACCGAGAATGAACTCTGTATG
18998149 C
1 C
18998150 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCTGTATG
Found at i:18999299 original size:159 final size:161
Alignment explanation
Indices: 18998972--18999341 Score: 422
Period size: 159 Copynumber: 2.3 Consensus size: 161
18998962 ACTCTGTATG
* * * *
18998972 CTTAGACTGGGAATGAACTTCGTATGACTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCA--
* * * * * * * *
18999037 CAGCCAGCCAGAGTGGCAGGATGAGTATGTCGGGGATTGGCCGGGTCCCCCTCTGCGTGCTGTCG
64 CAGCCAGCCAGAGGGGCAGGATGAGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCG
* * * * * *
18999102 ATCCTGCTGCCGTAATCGTTGATCCGATCCGAT
129 ATCCTACAGCCGCAACCCTCGATCCGATCCGAT
18999135 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCA-A
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCACA
* * * *
18999199 -CCGGCCAGAGGGGCGGGATGTGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGAT
66 GCCAGCCAGAGGGGCAGGATGAGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGAT
* * * *
18999263 CCTACAGTCGCAACCCTCGGTCTGGTCC-ATT
131 CCTACAGCCGCAACCCTCGATCCGATCCGA-T
* * * *
18999294 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
18999342 GTTGGCGGGT
Statistics
Matches: 176, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 1 0.01
159 115 0.65
160 1 0.01
163 59 0.34
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (161 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCACA
GCCAGCCAGAGGGGCAGGATGAGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGAT
CCTACAGCCGCAACCCTCGATCCGATCCGAT
Found at i:19000027 original size:26 final size:26
Alignment explanation
Indices: 18999979--19000029 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18999969 TGATCTGACC
**
18999979 TAGACTAGGAATGAACTTGGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
19000005 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
19000030 CAAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:19000916 original size:25 final size:26
Alignment explanation
Indices: 19000876--19000926 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
19000866 CGGTCTGATG
*
19000876 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
19000902 TTAGACT-AGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
19000927 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:19002568 original size:26 final size:26
Alignment explanation
Indices: 19002532--19002584 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19002522 CCAGCCTGAT
*
19002532 CTTAGACTGGGAACAAACTCTGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
**
19002558 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
19002584 C
1 C
19002585 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:19003818 original size:26 final size:26
Alignment explanation
Indices: 19003789--19003839 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19003779 GTGTACATCA
19003789 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
19003815 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
19003840 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:19004725 original size:26 final size:26
Alignment explanation
Indices: 19004689--19004741 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19004679 CCGGTCTGAT
*
19004689 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19004715 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19004741 C
1 C
19004742 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19005137 original size:26 final size:26
Alignment explanation
Indices: 19005108--19005157 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
19005098 CGTTTTCTAT
19005108 TTTTCACGATTTTTGAAACTTTTTGC
1 TTTTCACGATTTTTGAAACTTTTTGC
** * *
19005134 TTTTCGGGATTTTTTAAAGTTTTT
1 TTTTCACGATTTTTGAAACTTTTT
19005158 TCGAAAGGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.18, C:0.10, G:0.14, T:0.58
Consensus pattern (26 bp):
TTTTCACGATTTTTGAAACTTTTTGC
Found at i:19005618 original size:26 final size:26
Alignment explanation
Indices: 19005582--19005634 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19005572 TCGGCCTGAT
*
19005582 CTTAGACTGGGAACAAACTCTGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
**
19005608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
19005634 C
1 C
19005635 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:19006123 original size:902 final size:897
Alignment explanation
Indices: 19003789--19006925 Score: 4709
Period size: 893 Copynumber: 3.5 Consensus size: 897
19003779 GTGTACATCA
19003789 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAT
* * *
19003854 GAAACGAGCTTGCGGGTGCTCAATCGGCCAGAGGGGCGAGATGCGCAAGCCCGGGATCGGTCGGG
66 GAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCGAGATGCGCAAGCCCGGGATCGATCGGG
* * *
19003919 TCCCCCTCTGCGTGCTGTTGATCCTGTTGCCAAACCCTCGGCTCGGTCCAATCTTAGACTAGGAA
131 TCCCCCTCTACGTGCTGCTGATCCTGCTGCCAAACCCTCGGCTCGGTCCAATCTTAGACTAGGAA
*
19003984 TGAACTCCATATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCGGGCGGTCACTATGCC
196 TGAACTCCATATGCCTAAGCCAACCGACGAAACG-A---GCGGGCGAGCGGGCGGGCACTATGCC
19004049 GGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTT
257 GGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
19004113 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
322 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
19004178 CACGTGAAGTTTCATGGCAAGATGACTAGTTTTCTATTTTTCACAATTTTTGAAACTATTTGCGA
387 CACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCACAATTTTTGAAACTATTTGCGA
19004243 TACGTGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGATCCCAAACTCGGTAGACATGATCCTTG
452 TACGTGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGATCCCAAACTCGGTAGACATGATCCTTG
19004308 TATTTTTGTTGGCTTGCACAAAACAATTCAGCTAGAAACTCGAAGTGTAGAAGATTTTGTGACCA
517 TATTTTTGTTGGCTTGCACAAAACAATTCAGCTAGAAACTCGAAGTGTAGAAGATTTTGTGACCA
19004373 TTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAACCTGTAAAATCTCAA
582 TTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAACCTGTAAAATCTCAA
19004438 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
647 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * **
19004503 AGTACCAGCACCCATCGCACTTCATGTACGCACACACCCCCCGACCCCCCCGATCACCGAAACCC
712 AGTACCAGCACCCATCGCACATCATGT--GCGCACACCCCCCGACCCCCCCGATCGTCGAAACCC
* * * * * * **
19004568 CAATGTCGTCGGTCAGCTTTTTCGGTGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATATGG
775 CAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCAGAAGAAGAAAAATATGG
* *
19004633 CACCAGCTCATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
840 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGCCTGATCT
* * *
19004691 TAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAT
* * * ** * *
19004756 GAAATGAGCGTGCGGGCGCTCAGTCGGCCA-AGGGG-GGGATGCGCAAGCCAAGGATCG-GCCGG
66 GAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCGAGATGCGCAAGCCCGGGATCGATCGGG
* * * * * * ** * *
19004818 TCCCTCTCTACGTGCTGCCGATCCTACTACCGCAACCCTTGG-TCCGGTCTGATCTTAGAGTGGG
131 TCCCCCTCTACGTGCTGCTGATCCTGCTGCC-AAACCCTCGGCT-CGGTCCAATCTTAGACTAGG
* **
19004882 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-G-GCGGGCGGGCACTACACCGG
194 AATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTATGCCGG
* * * *
19004943 CCAGAGAGACGGGATACGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCA
259 CCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
19005008 TATTTCTGTGTGACAATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCA
324 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * **
19005073 CGTGAAG-TTCAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTTT
389 CGTGAAGTTTC-ATGGCAAGACGACTAGTTTTCTATTTTTCACAATTTTTGAAACTATTTGCGAT
* * * * * *
19005137 TCGGGATTTTTTAAAGTTTTTTCGAAAGGAGTTTT-AGCCCCAAACTTGGTAGACGTGATCCTTG
453 ACGTGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGA-TCCCAAACTCGGTAGACATGATCCTTG
* * * * *
19005201 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAGGTGTACAAAGATTTTGTGACC
517 TATTTTTGTTGGCTTGCACAAAACAATTCAGCTAGAAACTCGAAGTGTA-GAAGATTTTGTGACC
* *
19005266 ATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
581 ATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AACCTGTAAAATCTC
* *
19005331 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGATTTGATGAGGGATAGGGGGCCAATATAAGGGC
645 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * *
19005396 CAAGTACTAGCACCCATCGCACATCATGTGCGTACACCCCCCGACCGCCCCGATCGTCGGAACCG
710 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGAAACCC
* * **
19005461 CAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCAGATGAAGAAAAATGCGG
775 CAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCAGAAGAAGAAAAATATGG
* * * *
19005526 CACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTTGGTTCGGCCTGATCT
840 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGCCTGATCT
** *
19005584 TAGACTGGGAACAAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAT
* *
19005649 GAAACGAGCTTGCGGGTGCTCAATCGGCCAGAGGGGCGAGATGCGCAAGCCCGGGATCGATCGGG
66 GAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCGAGATGCGCAAGCCCGGGATCGATCGGG
* * *
19005714 TCCCCCTCTGCGTGCTGTTGATCCTGTTGCCAAACCCTCGGCTCGGTCCAATCTTAGACTAGGAA
131 TCCCCCTCTACGTGCTGCTGATCCTGCTGCCAAACCCTCGGCTCGGTCCAATCTTAGACTAGGAA
* *
19005779 TGAACTCCATATGCCTAAGCCATCCGACGAAACGAACGGGCGGGCGAGCGGGCGGTCACTATGCC
196 TGAACTCCATATGCCTAAGCCAACCGACGAAACG-A---GCGGGCGAGCGGGCGGGCACTATGCC
19005844 GGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTT
257 GGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
19005908 CATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
322 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
19005973 CACGTGAAGTTTCATGGCAAGATGACTAGTTTTCTATTTTTCACAATTTTTGAAACTATTTGCGA
387 CACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCACAATTTTTGAAACTATTTGCGA
19006038 TACGTGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGATCCCAAACTCGGTAGACATGATCCTTG
452 TACGTGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGATCCCAAACTCGGTAGACATGATCCTTG
19006103 TATTTTTGTTGGCTTGCACAAAACAATTCAGCTAGAAACTCGAAGTGTAGAAGATTTTGTGACCA
517 TATTTTTGTTGGCTTGCACAAAACAATTCAGCTAGAAACTCGAAGTGTAGAAGATTTTGTGACCA
19006168 TTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAACCTGTAAAATCTCAA
582 TTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAACCTGTAAAATCTCAA
19006233 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
647 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
19006298 AGTACCAGCACCCATCGCACATCATGTCCGCACACCCCCTGGCCCCCCCGATTGTCGAAACCCCA
712 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGAAACCCCA
* * * * * *
19006363 ATGCGGGCGGTCAGGTTCTCCGGCGATGCTCTGATGATAGTGCCCCGAAGAAGAAAAATATGGCA
777 ATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCAGAAGAAGAAAAATATGGCA
19006428 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC-GATCT
842 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG-CCTGATCT
* * *
19006484 TAGATTGGGAATGAACTCCGTCTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAT
* * ** * * * *
19006549 GAAACGAACGTGCGGGCGATCAGCCGGCCAGAGGGGCGGGATGCGTAAG-TCGAGGATCGACCGG
66 GAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCGAGATGCGCAAGCCCG-GGATCGATCGG
* * * * * * ** *
19006613 GTCCCACTCTACGTGTTGCTGATCCTGCTGCCATAACCCTCAGTTTGATCTGATCTTAGACTGGG
130 GTCCCCCTCTACGTGCTGCTGATCCTGCTGCCA-AACCCTCGGCTCGGTCCAATCTTAGACTAGG
* * * * * *
19006678 AATGAACTCCGTATGGCTTAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGCACTATGCCGA
194 AATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTATGCCGG
* * *
19006743 CCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCA
259 CCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
19006808 TATTTCTCCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
324 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * *
19006873 CGTGAAGTTTCATGGCAAAACGACTCGTTTTTTATTTTTCACGATTTTTGAAA
389 CGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCACAATTTTTGAAA
19006926 ACTTTTACGG
Statistics
Matches: 1992, Mismatches: 218, Indels: 54
0.88 0.10 0.02
Matches are distributed among these distances:
892 53 0.03
893 465 0.23
894 67 0.03
895 182 0.09
896 31 0.02
897 57 0.03
898 137 0.07
899 33 0.02
900 457 0.23
901 125 0.06
902 332 0.17
903 53 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAT
GAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCGAGATGCGCAAGCCCGGGATCGATCGGG
TCCCCCTCTACGTGCTGCTGATCCTGCTGCCAAACCCTCGGCTCGGTCCAATCTTAGACTAGGAA
TGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTATGCCGGCC
AGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCACAATTTTTGAAACTATTTGCGATACG
TGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGATCCCAAACTCGGTAGACATGATCCTTGTATT
TTTGTTGGCTTGCACAAAACAATTCAGCTAGAAACTCGAAGTGTAGAAGATTTTGTGACCATTTA
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGAAACCCCAATGC
CGTCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCAGAAGAAGAAAAATATGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGCCTGATCT
Found at i:19008090 original size:826 final size:822
Alignment explanation
Indices: 19006957--19008736 Score: 2658
Period size: 826 Copynumber: 2.2 Consensus size: 822
19006947 TTAAAATCCT
* *
19006957 CTTTAAGGGGTTGTGAGTTCACGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
1 CTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * * *
19007022 CAGTACCCATCGCACATCATTTGGGCACACCCCCCGGCCCCCCCGATCG-CTAAAACCCTAATGA
66 CAGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCCGATCGTC-GAAACCCCAATGC
19007086 CGGGGATCGACTGGGTCCCACTCTGCGTGCTACCGATCCTGCTGTCGCAACCCTGTGTCCGGTCC
129 CGGGGATCGACTGGGTCCCACTCTGCGTGCTACCGATCCTGCTGTCGCAACCCTGTGTCCGGTCC
*
19007151 AATCTTAGACTAGGAATGAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCT
194 AATCTTAGACTAGGAATGAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCT
* *
19007216 CAACCGGCCAGAGGGCGGGATGCGCAAGCCAGGGATCAGTCGGGTCCCCCTTTGCGTGATGTCGA
259 CAACCGGCCAGAGGGCGGGATGCGCAAGCCAGGGATCAGCCGGGTCCCCCTCTGCGTGATGTCGA
** ** *
19007281 TCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAACTTCGTACGCCTAAGC
324 TCCTGCTACCACAACCCTCCATCCGGTCTGATCTTAAACTGGGAATGAACTCCGTACGCCTAAGC
** * * * *
19007346 CAACCGACGAAACGAGCGGGTGGGCGGGCGGGCACTATGCCGTCTAGAGAGACGGGATGCGCAAG
389 CAACCGACGAAACGAGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
19007411 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCGTGCCAATGCCAT
454 CCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* *
19007476 TTTTATGGCTTGTAAATTCCTACAATGGTCCCTCAAGCCTTCACGTGAAGTGGCATGGCAAGATG
519 TTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTGGCATGGCAAGACG
* * * *
19007541 ACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCAGAATTTTTTGAAATTTTTTT
584 ACTCGTTTTCTATTTTTCAACATTTTTG-AACTTTTTACGATTCAGAATTTTTTAAAATTTTTTC
*
19007606 GGAAGGATTTCTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAA
648 GGAAGGATTT-T-GCCCCAAAACTTGGTAGACGTGATCCTTGT-CTTTTGTTGGCACGCACAAAA
* * *
19007670 CAATTCAGCTAAAAACTCAAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
710 AAATTCAGCTAAAAACTCAAAGTGTAAAAGATTTTGTGACCATTCGAAAAAAGTGTCCCAATTTC
* * *
19007735 AGACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCC
775 AAACACTTTAAGGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCC
* *
19007783 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTAC
1 CTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
19007848 CAGCACCCATCGCACATCATGTGTGCACACCCCCCCGACCCCCTCGATCGTCGAAACCCCAATGC
66 CAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCC-CGATCGTCGAAACCCCAATGC
* * * *
19007913 CGGGGATCGGCTGGGTCCCCCTCTGCGTTCTGCCGATCCTGCTG-CTGCAACCCTCG-GTCCGGT
129 CGGGGATCGACTGGGTCCCACTCTGCGTGCTACCGATCCTGCTGTC-GCAACCCT-GTGTCCGGT
* *
19007976 CCAATCTTAGACT-GGAAATG-AACTCCGTATGCCTAAGTCAA-CGATGAAACGAGCGTGCGGGC
192 CCAATCTTAGACTAGG-AATGAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGC
* * *
19008038 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCT
256 GCTCAACCGGCCAGA-GGGCGGGATGCGCAAGCCAGGGATCAG-CCGGGTCCCCCTCTGCGTGAT
* ** * *
19008102 GTCGATCCTGCTGCTGCAACCCTCCATCCGGTCTGATTTTAAACTGGGAATGAACTCCGTATGCC
319 GTCGATCCTGCTACCACAACCCTCCATCCGGTCTGATCTTAAACTGGGAATGAACTCCGTACGCC
19008167 TAAGCCAACCGACGAAACGAGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGC
384 TAAGCCAACCGACGAAACGAGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGC
*
19008232 GCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAT
449 GCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
* **
19008297 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
514 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTGGCATGGCA
* **
19008362 AGACGACTCGTTTTCTATTTTTCACCATTTTTGAACTTTTTACGATTCAGGTTTTTTTAAAATTT
579 AGACGACTCGTTTTCTATTTTTCAACATTTTTGAACTTTTTACGATTCAGAATTTTTTAAAATTT
* * * *
19008427 TTTCGGATGGATTTTTCCCCAAAACTTGGTAGACGTGATCCTTGTCTTTTGTTGGCATGCGCAAA
644 TTTCGGAAGGATTTTGCCCCAAAACTTGGTAGACGTGATCCTTGTCTTTTGTTGGCACGCACAAA
** *
19008492 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCAATTT
709 AAAATTCAGCTAAAAACTCAAAGTGTAAAAGATTTTGTGACCATTCGAAAAAAGTGTCCCAATTT
* * *
19008557 CAAACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCT
774 CAAACACTTTAAGGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCC
* * *
19008606 CTTTAAGGGGATGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCACTATAAGGGCCAAGAAC
1 CTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
19008671 CAGCACCCATTGCACATCATGTGCGCACACCCCCCGACCCTCCCGATCGTCGGATCCCCAATGCC
66 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCC-CCCGATCGTCGAAACCCCAATGCC
19008736 G
130 G
19008737 CCGGTCAGGT
Statistics
Matches: 863, Mismatches: 81, Indels: 24
0.89 0.08 0.02
Matches are distributed among these distances:
822 32 0.04
823 212 0.25
824 25 0.03
825 73 0.08
826 425 0.49
827 94 0.11
828 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (822 bp):
CTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGAAACCCCAATGCCG
GGGATCGACTGGGTCCCACTCTGCGTGCTACCGATCCTGCTGTCGCAACCCTGTGTCCGGTCCAA
TCTTAGACTAGGAATGAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCA
ACCGGCCAGAGGGCGGGATGCGCAAGCCAGGGATCAGCCGGGTCCCCCTCTGCGTGATGTCGATC
CTGCTACCACAACCCTCCATCCGGTCTGATCTTAAACTGGGAATGAACTCCGTACGCCTAAGCCA
ACCGACGAAACGAGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTGGCATGGCAAGACGAC
TCGTTTTCTATTTTTCAACATTTTTGAACTTTTTACGATTCAGAATTTTTTAAAATTTTTTCGGA
AGGATTTTGCCCCAAAACTTGGTAGACGTGATCCTTGTCTTTTGTTGGCACGCACAAAAAAATTC
AGCTAAAAACTCAAAGTGTAAAAGATTTTGTGACCATTCGAAAAAAGTGTCCCAATTTCAAACAC
TTTAAGGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCC
Found at i:19008890 original size:26 final size:26
Alignment explanation
Indices: 19008850--19008902 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19008840 CTGGTCTGAT
19008850 CTTAGACTGGCAATAAACTCCGTATG
1 CTTAGACTGGCAATAAACTCCGTATG
*
19008876 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGCAATAAACTCCGTATG
19008902 C
1 C
19008903 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATAAACTCCGTATG
Found at i:19009803 original size:26 final size:26
Alignment explanation
Indices: 19009763--19009815 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19009753 CCGATCCAAT
19009763 CTTAGACTGGAAATGAACT-TCGTATG
1 CTTAGACTGGAAATGAACTCT-GTATG
19009789 CTTAGACTAGG-AATGAACTCTGTATG
1 CTTAGACT-GGAAATGAACTCTGTATG
19009815 C
1 C
19009816 CTAAATCAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:19010691 original size:26 final size:26
Alignment explanation
Indices: 19010662--19010714 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19010652 CCGATCCGAT
19010662 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19010688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19010714 C
1 C
19010715 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19010895 original size:899 final size:899
Alignment explanation
Indices: 19007981--19012686 Score: 6625
Period size: 899 Copynumber: 5.2 Consensus size: 899
19007971 CCGGTCCAAT
* * *
19007981 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAA-CGATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * *
19008045 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCC
* * ** * * * *
19008110 TGCTGCTGCAACCCTCCATCCGGTCTGATTTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
19008175 CCGACGAAACGAGC--G-GA-CGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* ***
19008236 GCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
19008301 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * * *
19008366 GACTCGTTTTCTATTTTTCACCATTTT-TGAACTTTTTACGATTCAGGTTTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTTT
* * * *
19008430 CGGATGGA-TTTT-TCCCCAAAACTTGGTAGACGTGATCCTTGT-CTTTTGTTGGCATGCGCAAA
455 CGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
19008492 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCAATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
19008557 CAAACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGATGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
19008622 GTTCTCGAGGTTTAATGAGGGATAGGGGGCCACTATAAGGGCCAAGAACCAGCACCCATTGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
19008687 TCATGTGCGCACACCCCCCGACCCTCCCGATCGTCGGATCCCCAATGCCGCCGGTCAGGTTCTCT
714 TCATGTGCGCACACCCCCCGA-CC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * *
19008752 GGCGATGCTCCGACGATGGTGCCCCGGTGAGGAAAAATACGGCACCAGCACATGCCCGAGCCTAG
777 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
19008817 CATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGCAATAAACTCCGTATG
842 CATGTGCTGCCGCAACCCT-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
19008876 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
19008941 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCC
* *
19009006 TGCTACCGCAACCCTTGGTCCAGTCTGGTCCGATCTGATCTTAAACTGGGAATGAACTCCGTATG
131 TGCTACCGCAACCC----T-CGGTCTGGT-C---C-GATCTTAGACTGGGAATGAACTCCGTATG
* *
19009071 CCTAAGCCAACCGACGAAATGAGCGGGC-AGGCGGGCGGGCGGGCACTACG-CTGACCAGAGAGA
186 CCTAAGCCAACCGACGAAACGAGCGGGCGA-GCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGA
* * * **
19009134 CGGGATGCGCAGGTCGTGGATCGATAGGGTGGGAGGTGGGTTTATTCACATCTTCATATTTCTGC
249 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
19009199 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTT
314 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
19009264 TCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTCGGGATTTT
379 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGA-TTT
* *
19009329 TTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTT
443 TTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTT
19009394 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
507 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
19009459 GTGTCCCAATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTT
572 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
19009524 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGC
637 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * * *
19009588 ACCCACCGCACATCATGTGCGCAAACCCCCTGGCCCCCCCAATCGCCAGAACCCGAATGCCGCCG
702 ACCCATCGCACATCATGTGCGCACACCCCC-CG-ACCCCCGATCGCCGGAACCCCAATGCCGCCG
* * *
19009653 GTTAGGTTCTCCGGCGATGATCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT
765 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * * *
19009718 GCCCGAGCCCAGCTTGTGCTACCGCAACCCGTGGTCCGATCCAATCTTAGACTGGAAATGAACTT
830 GCCCGAGCCCAGCATGTGCTGCCGCAACCC-TGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
19009783 CGTATG
894 CGTATG
* * * * * * *
19009789 CTTAGACTAGGAATGAACTCTGTATGCCTAAATCAGCCCACGAAACTAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *** * ** *
19009854 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCTCTTTGCGTGCTGTAGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCC
* * * *
19009919 TGC-AGCCGCAACCCTTGGTCGGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
131 TGCTA-CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
19009983 ACCGACAAAACGAGCGGGCGAGCTGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
*
19010048 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
19010113 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** **
19010178 TGACTCATTTTCTATTTTTCATTATTTTCAAAACTTTTTGGGGTTCGGGATTTTTTAAATTTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTT
* *
19010243 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTAGTATTTTTGTTGGCATGCACAAAA
455 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* **
19010308 AAATTCAGCTAAACACTTTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
19010373 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTC-TTAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
19010437 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
19010502 CATGTGCGCACACCCCCTGACCCCCTATCGCCGGAACCCTAATGCCGTCGGTCGGGTTCTCCAGC
715 CATGTGCGCACACCCCCCGACCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * * * *
19010567 AATGCTCTGACGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTACCA
780 GATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
19010631 TGTGCTGCCACAACCCGTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
844 TGTGCTGCCGCAACCC-TGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19010688 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
19010753 CAGCCAGAGGGAAGGGATACGCAAG-CGGAGGATCGGTCGGGTCCCGCTCTACGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGG-GGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATC
* * * * * *
19010817 CTACTATCGCAACCCTGGGTCTGATCCGATATTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
19010882 ACCGACGAAACGAGCAGGCGAGCTGGCGGGTGGGCACTACGTCGGCCAGAGATATGGGAT-CACA
195 ACCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
19010946 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
19011011 ATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
19011076 CGACTCGTTTTTTATTTTTCACGATTTTGGAAACTTTTTGCAG-TCGGAGATTTTTTAAAATTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGG-GATTTTTT-AAATTTT
* * * * *
19011140 TTCGAAAGGAGTTTTGGCCCCATACATGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAA
453 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
19011205 AAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
19011270 TCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
19011335 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
19011400 ATCATGTACGCACACCCCCCACCGGGCCTCCCGATTGCCAGAACCCCAATGCCGCTGGTCAGGTT
713 ATCATGTGCGCACA--CCCC-CC-GACC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
19011465 CTCCGGCGATGCTCCGGCGATGGTACCCCGACGAATAAAAATGCGGCACCAGCACATGCCCGAGC
773 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * *
19011530 CCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGTCTGGGAATGAACTCCGTATG
838 CCAGCATGTGCTGCCGCAACCCT-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19011593 CTTAGACTGGGAATGAACTCCGTAAGCCTAACTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
19011658 CAGCCAAAGGGGCGGGATACGCAAGCCGGGGATCAGTGGGGTCCCTTTCTGCGTGCGGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCC
* * * * *
19011723 TGCTGCTGCATCCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
19011788 CCGACGAAATGAGC--G-G-GCGGGCGGGCGGTCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
19011849 GCCGTGGATCGATAGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
261 GCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
19011914 ATTTTTATGGCTTGTAAATTCATACAATGCTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
325 ATTTTTATGGCTTGTAAATTCATACAATG-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
19011979 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCCGAATTTTTTAAACTTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAA-TTTT
* *
19012044 TTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
453 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CA
*
19012109 AAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
517 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
19012174 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
19012239 GAGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * **
19012304 CATCATGTGCTCACACCCCCACCCCCGCCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAG
712 CATCATGTGCGCACA----C-CCCCCG--ACCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG
* * *
19012369 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCTCCAGCACATGCCCG
770 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * * *
19012434 ATCCCAGCATGTGCTGCTGCAACCCTTGGTCCGGTCTGATCTTAGGCTAGGAATGAACTTCGTAT
835 AGCCCAGCATGTGCTGCCGCAACCC-TGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
19012499 G
899 G
* * * * *
19012500 CTTAGACTGGGAATGAACTCCATATTCGTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTCATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19012565 CGGCCAGAGGGGGTGGGATGCGCATGCCAGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
66 CGGCCAGA-GGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATC
* *
19012630 CTGCTACCACAACCCTCGGT-TCGGTCCGATCTTAGACTGAGAAT-AACGTCCGTATGC
130 CTGCTACCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAAC-TCCGTATGC
19012687 TTAGACTGGT
Statistics
Matches: 3400, Mismatches: 352, Indels: 105
0.88 0.09 0.03
Matches are distributed among these distances:
895 34 0.01
896 98 0.03
897 4 0.00
898 177 0.05
899 529 0.16
900 144 0.04
901 209 0.06
902 80 0.02
903 339 0.10
904 146 0.04
905 522 0.15
906 56 0.02
907 214 0.06
908 104 0.03
909 2 0.00
910 185 0.05
911 30 0.01
912 35 0.01
913 310 0.09
914 182 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGACCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19011596 original size:26 final size:26
Alignment explanation
Indices: 19011567--19011616 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19011557 CTGGTCCGAT
*
19011567 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19011593 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
19011617 AGCCTAACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19012114 original size:905 final size:899
Alignment explanation
Indices: 19007981--19012686 Score: 6598
Period size: 905 Copynumber: 5.2 Consensus size: 899
19007971 CCGGTCCAAT
* * *
19007981 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAA-CGATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * *
19008045 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCC
* ** * * *
19008110 TGCTGCTGCAACCCTCCATCCGGTCTGATTTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
19008175 CCGACGAAACGAGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* ***
19008240 TGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
19008305 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * *
19008370 CGTTTTCTATTTTTCACCATTTT-TGAACTTTTTACGATTCAGG-TTTTTTTAAAATTTTTTCGG
391 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GGAATTTTTT-AAATTTTTTCGG
* * * *
19008433 ATGGA-TTTT-TCCCCAAAACTTGGTAGACGTGATCCTTGT-CTTTTGTTGGCATGCGCAAAAAA
454 AAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
19008495 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCAATTTCAA
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
19008560 ACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
19008625 CTCGAGGTTTAATGAGGGATAGGGGGCCACTATAAGGGCCAAGAACCAGCACCCATTGCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
19008690 TGTGCGCACA--CCCCCCGACCCTCCCGATCGTCGGATCCCCAATGCCGCCGGTCAGGTTCTCTG
713 TGTGCGCACACCCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG
** * * *
19008753 GCGATGCTCCGACGATGGTGCCCCGGTGAGGAAAAATACGGCACCAGCACATGCCCGAGCCTAGC
778 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
19008818 ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGCAATAAACTCCGTATG
843 ATGTGCTGCCGCAACCCT-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
19008876 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
19008941 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCC
* * *
19009006 TGCTACCGCAACCCTTGGTCCAGTCTGGTCCGATCTGATCTTAAACTGGGAATGAACTCCGTATG
131 TGCTGCCGCAACCCTCGGT-C---C-GGT-C---C-GATCTTAGACTGGGAATGAACTCCGTATG
* *
19009071 CCTAAGCCAACCGACGAAATGAGCGGGCAGGCGGGCGGGCGGGCACTACG-CTGACCAGAGAGAC
186 CCTAAGCCAACCGACGAAACGAGC--G--GGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGAC
* * * **
19009135 GGGATGCGCAGGTCGTGGATCGATAGGGTGGGAGGTGGGTTTATTCACATCTTCATATTTCTGCA
246 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
19009200 TGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTT
311 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
19009265 CATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACAGTTCGGGATTTTT
376 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GGAATTTT
* *
19009330 TTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTG
440 TTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTG
19009395 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
504 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
19009460 TGTCCCAATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTA
569 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
19009525 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCA
634 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * * *
19009589 CCCACCGCACATCATGTGCGCA-A-ACCCCCTGGCCCCCCCAATCGCCAGAACCCGAATGCCGCC
699 CCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCT
* * *
19009652 GGTTAGGTTCTCCGGCGATGATCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACA
764 GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * * *
19009717 TGCCCGAGCCCAGCTTGTGCTACCGCAACCCGTGGTCCGATCCAATCTTAGACTGGAAATGAACT
829 TGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TGGTCCGGTCCGATCTTAGACTGGGAATGAACT
*
19009782 TCGTATG
893 CCGTATG
* * * * * * *
19009789 CTTAGACTAGGAATGAACTCTGTATGCCTAAATCAGCCCACGAAACTAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *** * ** *
19009854 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCTCTTTGCGTGCTGTAGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCC
* * * * *
19009919 TGCAGCCGCAACCCTTGGTCGGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
19009984 CCGACAAAACGAGCGGGCGAGCTGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGC--G--GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
19010049 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
19010114 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** ** *
19010179 GACTCATTTTCTATTTTTCATTATTTTCAAAACTTTTTGGGGTTCGGGATTTTTTAAATTTTTTC
387 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGAATTTTTTAAATTTTTTC
* *
19010244 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTAGTATTTTTGTTGGCATGCACAAAAA
452 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* **
19010309 AATTCAGCTAAACACTTTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
19010374 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTC-TTAAGGGGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
19010438 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
19010503 ATGTGCGCACA---CCCCCTG-ACCCCCTATCGCCGGAACCCTAATGCCG-TCGGTCGGGTTCTC
712 ATGTGCGCACACCCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCT-GGTCAGGTTCTC
* * * * *
19010563 CAGCAATGCTCTGACGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCT
776 CGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
19010627 ACCATGTGCTGCCACAACCCGTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
840 AGCATGTGCTGCCGCAACCC-TGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19010688 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
19010753 CAGCCAGAGGGAAGGGATACGCAAG-CGGAGGATCGGTCGGGTCCCGCTCTACGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGG-GGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATC
* ** * * * * *
19010817 CTACTATCGCAACCCTGGGTCTGATCCGATATTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
19010882 ACCGACGAAACGAGCAGGCGAGCTGGCGGGTGGGCACTACGTCGGCCAGAGATATGGGAT-CACA
195 ACCGACGAAACGAGC--G-G-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
19010946 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
19011011 ATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
19011076 CGACTCGTTTTTTATTTTTCACGATTTTGGAAACTTTTTGCAG-TCGGAGATTTTTTAAAATTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGA-ATTTTTT-AAATTTT
* * * * *
19011140 TTCGAAAGGAGTTTTGGCCCCATACATGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAA
449 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
19011205 AAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
19011270 TCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
19011335 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
19011400 ATCATGTACGCACACCCCCCACCGGGCCTCCCGATTGCCAGAACCCCAATGCCGCTGGTCAGGTT
709 ATCATGTGCGCACACCCCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTT
* * *
19011465 CTCCGGCGATGCTCCGGCGATGGTACCCCGACGAATAAAAATGCGGCACCAGCACATGCCCGAGC
773 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * *
19011530 CCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGTCTGGGAATGAACTCCGTATG
838 CCAGCATGTGCTGCCGCAACCCT-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
19011593 CTTAGACTGGGAATGAACTCCGTAAGCCTAACTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
19011658 CAGCCAAAGGGGCGGGATACGCAAGCCGGGGATCAGTGGGGTCCCTTTCTGCGTGCGGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCC
* * *
19011723 TGCTGCTGCATCCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
19011788 CCGACGAAATGAGCGGGCGGGCGGGCGGTCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*
19011853 TGGATCGATAGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
261 TGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
19011918 TTATGGCTTGTAAATTCATACAATGCTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
325 TTATGGCTTGTAAATTCATACAATG-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
19011983 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCCGAATTTTTTAAACTTTTTTCG
389 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGAATTTTTTAAA-TTTTTTCG
* *
19012048 GAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAA
453 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAA
*
19012113 AATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
19012178 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
19012243 TCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
19012308 ATGTGCTCACACCCCCACCCCCGCCCCCCCCGATCGTCGGAACCCCAATGCC-ATCGGTCAGGTT
712 ATGTGCGCACA--CCC-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCT-GGTCAGGTT
* * * *
19012372 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCTCCAGCACATGCCCGATC
773 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * *
19012437 CCAGCATGTGCTGCTGCAACCCTTGGTCCGGTCTGATCTTAGGCTAGGAATGAACTTCGTATG
838 CCAGCATGTGCTGCCGCAACCC-TGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
19012500 CTTAGACTGGGAATGAACTCCATATTCGTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTCATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
19012565 CGGCCAGAGGGGGTGGGATGCGCATGCCAGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
66 CGGCCAGA-GGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATC
* * * *
19012630 CTGCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTGAGAAT-AACGTCCGTATGC
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC-TCCGTATGC
19012687 TTAGACTGGT
Statistics
Matches: 3394, Mismatches: 354, Indels: 113
0.88 0.09 0.03
Matches are distributed among these distances:
895 34 0.01
896 100 0.03
897 5 0.00
898 176 0.05
899 523 0.15
900 147 0.04
901 203 0.06
902 80 0.02
903 333 0.10
904 145 0.04
905 524 0.15
906 57 0.02
907 217 0.06
908 99 0.03
909 1 0.00
910 186 0.05
911 30 0.01
912 37 0.01
913 318 0.09
914 179 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGAATTTTTTAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:19012850 original size:185 final size:186
Alignment explanation
Indices: 19012494--19012852 Score: 445
Period size: 185 Copynumber: 1.9 Consensus size: 186
19012484 GAATGAACTT
* * *
19012494 CGTATGCTTAGACTGGGAATGAACTCCATATTCGTAAGTCAACCCACGAAACGAGCGTTCGGGCG
1 CGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * **
19012559 CTCATCCGGCCAGAGGGGGTGGGATGCGCATGCCAGGGATCGGTCGGGTCCCCCTCTACGTGCTG
66 CTCATCCAGCCAGAGGGGGCGGGATGCGCAAGCCAGGGATCGATCAGATCCCCCTCTACGTGCCA
* ** *
19012624 CCGATCCTGCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTGAGAATAACGTC
131 CCGATCCTACTACCACAACCCTCAATTCGATCCGATCTTAGACTGAGAATAACGTC
* ** * *
19012680 CGTATGCTTAGACTGGTAATGAACTCTGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGTG
1 CGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* *
19012745 CTCAGT-CAGCCAGA-GGGGCGGGATGCGCAAGCCGGGGATCGATCAGATCCCCCTCTGCGTGCC
66 CTCA-TCCAGCCAGAGGGGGCGGGATGCGCAAGCCAGGGATCGATCAGATCCCCCTCTACGTGCC
* * * *
19012808 ATCGATCCTACTGCCACAACCTTTAA-TCTGATCCGATCTTAGACT
130 ACCGATCCTACTACCACAACCCTCAATTC-GATCCGATCTTAGACT
19012853 AGGAATGAAC
Statistics
Matches: 145, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
184 2 0.01
185 74 0.51
186 68 0.47
187 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (186 bp):
CGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
CTCATCCAGCCAGAGGGGGCGGGATGCGCAAGCCAGGGATCGATCAGATCCCCCTCTACGTGCCA
CCGATCCTACTACCACAACCCTCAATTCGATCCGATCTTAGACTGAGAATAACGTC
Found at i:19013582 original size:26 final size:26
Alignment explanation
Indices: 19013553--19013602 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19013543 CCGGTCCAAT
*
19013553 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19013579 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
19013603 AGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19014368 original size:893 final size:897
Alignment explanation
Indices: 19012631--19016682 Score: 5354
Period size: 899 Copynumber: 4.5 Consensus size: 897
19012621 CTGCCGATCC
* * * *
19012631 TGCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTGAGAAT-AACGTCCGTATGCTTAGACTG
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAAC-TCCGTATGCTTAGACTG
* * * *
19012695 GTAATGAACTCTGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGTGCTCAGT-CAGCCAGA
65 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-TCCGGCCAGA
* * * ** *
19012759 GGGGCGGGATGCGCAAGCCGGGGATCGATCAGATCCCCCTCTGCGTGCCATCGATCCTACTGCCA
129 GGGGCGGGATGCGCAAGCCGAGGATCGA-CGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCG
* * * * * * * *
19012824 CAACCTTTAATCTGATCCGATCTTAGACTAGGAATGAACTTC-TACGCCTAAGCCAACCGATGAA
193 CAACCCTTAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
19012888 ACGAGCGGGC---A-GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCAA
258 ACGAGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
19012949 TAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
323 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * *
19013014 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGCCAAGACGACTCATTTTCT
388 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
19013079 ATTTTTCATGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGATTTT
453 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGA-TTT
* *
19013144 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAGTCAGCTAA
517 TGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAA
* * * **
19013209 AAACTCGAAGTGTACAATATATTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGATGCATTAA-
582 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAAT
* *
19013273 AGGCTACTGGCAGCAAACCTGTAAAATATCAAAAGCTCTTTAA-GGGGTGTGAGTTCTCGAA-GT
647 A-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AAGGT
* *
19013336 TTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
710 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
19013401 C-ACCCCTCGGCACCCCCGATCGCCGGAACCCCAATGCCGTCGATTAGGTTCTCCGACCATGCTC
775 CAACCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* * * *
19013465 CGGTGATGGTGCCCCGGCGAAGAGAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
839 CGGCGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATG
* *** * *
19013524 TGCTACGGTAACCCTCAGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
19013589 GAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTCATCCGGCCAAAGG
66 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGG
*
19013654 GGCGGGATGCGCAAGCCGAGGATCGACGGGT-CCCCTCTGCGTGCTGTCGATCCTACTGCCGTAA
131 GGCGGGATGCGCAAGCCGAGGATCGACGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCGCAA
* ** ** * * *
19013718 CCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACCAACGAAACG
196 CCCTTAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * *
19013783 AGCGGGCGGGAGGGCAGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAG
261 AGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
** *
19013848 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCATGTA
326 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* *
19013913 AATTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCATAGCAAGACGACTCGTTTTCTATT
391 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
19013978 TTTCACT-A-TTTTGAAACTTTTTG-GGGTCGGGGATTTTTGAAAATTTTTTC-AAAAGATTTGG
456 TTTCA-TGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGAAAGGATTT--
*
19014039 TGG-TC-AAA-TTGGTAGACTGTGATCCTTGTATTTTT-TT-GCATGCACAAAAAAAGTCAGCTA
517 TGGCCCAAAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTA
* *
19014099 ACAACTCGAAGTGTATAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTA
581 AAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTA
19014164 A-AGCTACTGGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
645 ATAGCTACTGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
* *
19014228 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCAC
709 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
19014293 ACAAGCCCTGGCCCCCCCGATTGCCGGAACCCCAATGCCGTC-GACTAGGTTCTCCGACGATGCT
774 ACAACCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC-AGGTTCTCCGACGATGCT
* * *
19014357 CCGACGATGGTGCCCCGACGAAGAAAAAT-TCAGCTCCAGCACATGCTCGAGCCCAGCATG
838 CCGGCGATGGTGCCCCGACGAAGAAAAATGT-AGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
19014417 TGCTGCCACGACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTGG
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * *
19014482 GAATGAACTCCGTTTGCCTAAGTCAACCCACGAAACAAGCATTCAGGCGCTCATCCGACCAGAGG
66 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGG
* * * * * * * * *
19014547 GGCGGGATGCGTAAGCCG-GTGATCGGTCGGTTACCCCTCTACGTGCTGTTGATCCTGCTACCGT
131 GGCGGGATGCGCAAGCCGAG-GATC-GACGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCGC
* *
19014611 AACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
194 AACCCTTAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A
* * * * * * *
19014676 TAAGCGAGCGGACGGGCGGGTGGGCACTACGTCGGCCAGAAAGAAGGGATGCGCAAGCCATGGAT
257 -AA-CGAGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
19014741 CGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
320 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* *
19014806 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACAACTCG-TT
385 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
19014870 TCTATTTCTCAAGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAG
450 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGA-
* * *
19014935 TTTTGG-TCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGC
514 TTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGC
* * * *
19014999 TAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTGAGACACTTT
579 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATT
* * **
19015064 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGG
644 AATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
*
19015129 TCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
709 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * *
19015194 ACACCCTCCCGGCCCCCCCGACCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGATGATGGT
774 ACAACC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* *
19015259 ---GC-ATCGGT--------GAAGAAAAATGTAGCACCAGCAAATGCCCGAGCCCAGCTTG
838 CCGGCGAT-GGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
19015308 TGCTGCCACAAGCCTCGGTCTGGTCTGATCTTAG-TCTGGGAATGAACTCCGTATGCTTAGTCAG
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGAT-TGGGAATGAACTCCGTATGCTTAGACTG
* * *
19015372 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAGAG
65 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAG
* * * * *
19015437 GGGTGGGATGCGCAAGCCGGGGATCGACAGGGTCCCCTTCTGTGTGCTG-CTGATCCTGCTGCCG
130 GGGCGGGATGCGCAAGCCGAGGATCGAC-GGGTCCCCCTCTGCGTGCTGTC-GATCCTACTGCCG
* * * * *
19015501 CAACCCTTAATCCGGTTTGATCTTAGACTAGTAATGAACTCTGTATGCCTAAGCCAACCAACGAA
193 CAACCCTTAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
19015566 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGA
258 ACGAGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
19015631 TATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
323 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
19015696 GTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCT
388 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** *
19015761 ATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGGATTTTCTAAAATTTTTTCGAAAGGAATTT
453 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGG-ATTT
* * * * *
19015826 TGGCCCCAAAA-TTGGTAGATGTGATACTTGTATTTTTGTTGACATGAACAAAAAAATTCAGCTA
517 TGG-CCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTA
* *
19015890 AAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
581 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAA
* *
19015955 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
646 TAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* *
19016020 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCAT
711 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
19016085 ACACCCCCGG-CCCCCCGATCCCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC
776 A-ACCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
* *
19016149 GGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGGATG
840 GGCGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * * * *
19016207 TGCTGTCGCAACCCTCAGTCTGATCCGATCTTA-CTCTGGGAATGAACTCCATATGCTTAGATTG
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGAT-TGGGAATGAACTCCGTATGCTTAGACTG
* * * *
19016271 GGAATGAACTCTATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCTCTCAGT-CGGCCAGA
65 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-TCCGGCCAGA
* * * * ** *
19016335 GAGGCAGGATGCGCAAG-AGAGGGATCGATCAGGTCCCCCTCTATGTGCTGTCGATCCTACTACC
129 GGGGCGGGATGCGCAAGCCGA-GGATCGA-CGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCC
* * * * **
19016399 ACAACCCTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGATAA
192 GCAACCCTTAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * ** *
19016464 AATGAGCAGGCAGGCGGACGGGGGGGTACTACGCCATCCAGAGAGACGGGATGCGCAAACCGTGG
257 AACGAGCGGGC--G-GGA-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
19016529 ATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTTA
318 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA-TTTTTA
* *
19016594 TGGCTTGTAAATTCATA-AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCA
382 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
*
19016658 TTTTTTATTTTTCATGATTTTTGAA
447 TTTTCTATTTTTCATGATTTTTGAA
19016683 CTCGGTATGC
Statistics
Matches: 2781, Mismatches: 307, Indels: 132
0.86 0.10 0.04
Matches are distributed among these distances:
887 176 0.06
888 111 0.04
889 242 0.09
890 9 0.00
891 362 0.13
892 124 0.04
893 468 0.17
894 22 0.01
895 119 0.04
896 174 0.06
897 2 0.00
898 18 0.01
899 472 0.17
900 29 0.01
901 173 0.06
902 95 0.03
903 163 0.06
904 22 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCATCCGGCCAGAGG
GGCGGGATGCGCAAGCCGAGGATCGACGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCGCAA
CCCTTAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
AGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGATTTTGGC
CCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATAGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCC
CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGAT
GGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATG
Found at i:19015374 original size:26 final size:26
Alignment explanation
Indices: 19015337--19015389 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19015327 CTGGTCTGAT
*
19015337 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGTCAGGGAATGAACTCCGTATG
*
19015363 CTTAGTCAGGGAATGAACTCTGTATG
1 CTTAGTCAGGGAATGAACTCCGTATG
19015389 C
1 C
19015390 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGTCAGGGAATGAACTCCGTATG
Found at i:19017100 original size:426 final size:429
Alignment explanation
Indices: 19016249--19017105 Score: 1194
Period size: 430 Copynumber: 2.0 Consensus size: 429
19016239 ACTCTGGGAA
* * * *
19016249 TGAACTCCATATGCTTAGATTGGGAATGAACTCTATATGCCTAAGTCAACCCATGAAATGAGCGT
1 TGAACTCCATATGCTTAGACTGGGAATGAACTCGATATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
19016314 GCGGGCTCTCAGTCGGCCAGAGAGGCAGGATGCGCAAGAGAGGGATCGATCAGGTCCCCCTCTAT
66 GCAGGCGCTCAATCGACCAGAGAGGCAGGATGCGCAAGAGAGGGATCGACCAGGTCCCCCTCTAC
* *
19016379 GTGCTGTCGATCCTACTACCACAACCCTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGT
131 GTGCTCTCGATCCTACTACCACAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGT
* * *
19016444 ATGCCTAAGCCAATCGATAAAATGAGCAGGCAGGCGGACGGGGGGGTACTACGCCATCCAGAGAG
196 ATGCCTAAGCCAATCGATAAAACGAGCAGGCA-GCGGACGGGGGGGCACTACGCCATCCAAAGAG
* * * * *
19016509 ACGGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTG
260 ACGGGATGCGCAAACCGCGGATCGATAGGCTAGCAGGTGGGTTTAGGTACATCTTCATATTTCTA
*
19016574 CATGCCAATGCCATTTTTTATGGCTTGTAAATTCATAAATGGTCCCTTAAGCCTTCATGTGAAGT
325 CATGCCAATGCCATTTTCTATGGCTTGTAAATTCATAAATGGTCCCTTAAGCCTTCATGTGAAGT
*
19016639 TTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTT
390 TTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
** *
19016679 TGAACTCGGTATGCTTAGACTGGGAATGAACTCGGTATGCCTAAGTCAACCCACGAAACGAGCGT
1 TGAACTCCATATGCTTAGACTGGGAATGAACTCGATATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * *
19016744 GCAGGCGCTCAATCGACCAGAGGGGCGGGATGCGTAAGTTG-GGGATCGGCCAGGTCCCTCTCTG
66 GCAGGCGCTCAATCGACCAGAGAGGCAGGATGCGCAAG-AGAGGGATCGACCAGGTCCCCCTCTA
* * *
19016808 CGTGCTACT-GATCCTGCTACCCCAACCCTCTA-TCCGGT-TCGATCTTAGACTGGGAATGAACT
130 CGTGCT-CTCGATCCTACTACCACAACCCTC-AGTCCGGTCT-GATCTTAGACTAGGAATGAACT
* * *
19016870 CCGTATGCCTAAGCCAA-CTGATGAAACGAGCAGGC-G-GG-CGGGTGGGCACTACGTCGA-CCA
192 CCGTATGCCTAAGCCAATC-GATAAAACGAGCAGGCAGCGGACGGGGGGGCACTACG-CCATCCA
* * *
19016930 AAGAGATGGGATGCTCAAGCCGCGGATCGATAGGCTAGCAGGTGGGTTTAGGTACATCTTCATAT
255 AAGAGACGGGATGCGCAAACCGCGGATCGATAGGCTAGCAGGTGGGTTTAGGTACATCTTCATAT
19016995 TTCTACATGCCAATGCCATTTTCT-TGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATG
320 TTCTACATGCCAATGCCATTTTCTATGGCTTGTAAATTCAT-AAATGGTCCCTTAAGCCTTCATG
*
19017059 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
384 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
19017105 T
1 T
19017106 TAAACTTTTT
Statistics
Matches: 378, Mismatches: 42, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
425 16 0.04
426 163 0.43
427 4 0.01
428 1 0.00
429 2 0.01
430 189 0.50
431 3 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (429 bp):
TGAACTCCATATGCTTAGACTGGGAATGAACTCGATATGCCTAAGTCAACCCACGAAACGAGCGT
GCAGGCGCTCAATCGACCAGAGAGGCAGGATGCGCAAGAGAGGGATCGACCAGGTCCCCCTCTAC
GTGCTCTCGATCCTACTACCACAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGT
ATGCCTAAGCCAATCGATAAAACGAGCAGGCAGCGGACGGGGGGGCACTACGCCATCCAAAGAGA
CGGGATGCGCAAACCGCGGATCGATAGGCTAGCAGGTGGGTTTAGGTACATCTTCATATTTCTAC
ATGCCAATGCCATTTTCTATGGCTTGTAAATTCATAAATGGTCCCTTAAGCCTTCATGTGAAGTT
TCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
Found at i:19017596 original size:26 final size:26
Alignment explanation
Indices: 19017567--19017619 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19017557 CCGGTCCGAT
*
19017567 CTTAGACTGGGAATGAAC-TCGGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
19017593 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
19017619 C
1 C
19017620 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:19018399 original size:754 final size:756
Alignment explanation
Indices: 19016932--19018436 Score: 2190
Period size: 754 Copynumber: 2.0 Consensus size: 756
19016922 GTCGACCAAA
* *
19016932 GAGATGGGATGCTCAAGCCGCGGATCGATAGGCTAGCAGGTGGGTTTAGGTACATCTTCATATTT
1 GAGACGGGATGCGCAAGCCGCGGATCGATAGGCTAGCAGGTGGGTTTAGGTACATCTTCATATTT
*
19016997 CTACATGCCAATGCCATTTTCTTGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGA
66 CTACATGCCAATGCCATTTTCTTGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGA
* **
19017062 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTGCAGTTCGAGA
131 AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGAGA
* * * * *
19017127 TTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTT
196 TTTTTCTAAAATTTTTTCGAAAGGAGATTTGGCCCCAAAATTGGTAGACATGATACTTGTATTTT
* * * * *
19017192 TATTGGCATGCACAAAACAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGAA
261 TATTGACATGAACAAAAAAATTCAGCTAAAAACCCGAAGTGCACAAGATTTTGTGACCAATTGAA
19017257 AAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCT
326 AAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCT
* *
19017322 CTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGACAAGTACC
391 CTTTAAGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACC
* * ** * * ***
19017387 AGCACCCATCGTACATCAATTGCGTACACACCGTTCTGGCCCCTCGATTGTCGGAACCCCAACGC
456 AGCACCCATCGCACATCAATTGCGCACACACCGCCCCGGCCCCCCGATCCCCGGAACCCCAACGC
* * * *
19017452 TGCTGGTTAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAG
521 CGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAG
* * *
19017517 CACATGTCCATGCCCAGGATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATG
586 CACATGCCCATGCCCAGGATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATG
** * *
19017582 AACTCGGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAGCCCATGTAACGAGCGTGC
651 AACTCCATATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
*
19017647 GGGCTCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCAGG
716 GGGCTCTCAGCCAGCCAGAGAGGCAGGATGCGCAAGCCAGG
* * * *
19017688 GAGACGGGATGCGCAAGTCGTGGATCGATATGG-TGGTAGGTGGGTTTAGGTACATCTTCATATT
1 GAGACGGGATGCGCAAGCCGCGGATCGATA-GGCTAGCAGGTGGGTTTAGGTACATCTTCATATT
* * * * **
19017752 TTTGCGTGCCAATGCCATTTT-TATTGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGT
65 TCTACATGCCAATGCCATTTTCT-TGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGT
*
19017816 GAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGA-TTTCAAAACTTTTTTGCGGTTC-
129 GAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAAC-TTTTTGCAGTTCG
**
19017879 AGGA-TTTTCTAAAA-TTTTTCGAAAGGA-ATTTGGCCCCAAAATTGGTAGATGTGATACTTGTA
193 A-GATTTTTCTAAAATTTTTTCGAAAGGAGATTTGGCCCCAAAATTGGTAGACATGATACTTGTA
* *
19017941 TTTTTGTTGACATGAACAAAAAAATTCAGCTAAAAAACTCGAAGTGCACAAGA-TTTGTGGACCA
257 TTTTTATTGACATGAACAAAAAAATTCAGCT-AAAAACCCGAAGTGCACAAGATTTTGT-GACCA
* *
19018005 ATTGAAAAAAGTGTCCCCATTTCAGACCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
320 ATTGAAAAAACTGTCCCCATTTCAGA-CACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTC
*
19018070 AAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCC
384 AAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGAC
* *
19018135 AAGTACCAGTACCCATCGCACATC-ATGTGCGCATACACC-CCCCGGCCCCCCGATCCCCGGAAC
449 AAGTACCAGCACCCATCGCACATCAAT-TGCGCACACACCGCCCCGGCCCCCCGATCCCCGGAAC
* *
19018198 CCCAATGCCG-TCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG
513 CCCAACGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * *
19018262 TGGCACCAGCACATGCCCGA-GGCCAGGATGTGCTGTCGCAACCCTCAGTCTGATCCGATCTTAC
577 TGGCACCAGCACATGCCC-ATGCCCAGGATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAC
* * *
19018326 TCTGGGAATGAACTCCATATGCTTAGATTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCATGA
641 ACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTTC-GTATGCCTAAGTCAACCCATGA
* * *
19018390 AATGAGCGTGCGGGCTCTCAGTCGGCCAGAGAGGCAGGATGCGCAAG
705 AACGAGCGTGCGGGCTCTCAGCCAGCCAGAGAGGCAGGATGCGCAAG
19018437 AGAGGGATCG
Statistics
Matches: 668, Mismatches: 70, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
753 66 0.10
754 287 0.43
755 150 0.22
756 163 0.24
757 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (756 bp):
GAGACGGGATGCGCAAGCCGCGGATCGATAGGCTAGCAGGTGGGTTTAGGTACATCTTCATATTT
CTACATGCCAATGCCATTTTCTTGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGAGA
TTTTTCTAAAATTTTTTCGAAAGGAGATTTGGCCCCAAAATTGGTAGACATGATACTTGTATTTT
TATTGACATGAACAAAAAAATTCAGCTAAAAACCCGAAGTGCACAAGATTTTGTGACCAATTGAA
AAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCT
CTTTAAGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACC
AGCACCCATCGCACATCAATTGCGCACACACCGCCCCGGCCCCCCGATCCCCGGAACCCCAACGC
CGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAG
CACATGCCCATGCCCAGGATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATG
AACTCCATATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
GGGCTCTCAGCCAGCCAGAGAGGCAGGATGCGCAAGCCAGG
Found at i:19020513 original size:754 final size:753
Alignment explanation
Indices: 19019041--19020521 Score: 2242
Period size: 754 Copynumber: 2.0 Consensus size: 753
19019031 CTCAAGCCGC
19019041 GGATCGATAGGCTAGTAGGTGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTCT
1 GGATCGATAGGCTAGTAGGTGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTCT
* *
19019106 TGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCAAGACGACTCGT
66 TGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCAAGACAACTCGT
** * * * *
19019171 TTCTATTTTTCATGATTTTTTAAACTTTTTGCAGTTCGAGATTTTTTTAAAATTTTTTTGGAAGG
131 TTCTATTTTTCATGATTTTCAAAACTTTTTACAGTTCGAGATTTTTCTAAAATTTTTTCGAAAGG
* * * * *
19019236 AGTTTTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCA
196 AATTTTGGCCCCAAAATTGGTAGACATGATACTTGTATTTTTATTGACATGAACAAAAAAATTCA
* *
19019301 GCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACT
261 GCTAAAAACCCGAAGTGCACAAGATTTTGTGACCAATTGAAAAAACTGTCCCCATTTCAGACACT
19019366 TTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAG
326 TTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAG
* * *
19019431 GTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATTTGCG
391 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
* * * *** * * *
19019496 TACACACCCTTCTGGCCCCTCGATTGTCGGAACCCCAACGCTGCTGGTTAGGTTCTCCGACGATG
456 CACACACCCTCCCGGCCCCTCGATCCCCGGAACCCCAACGCCGCCGGTCAGGTTCTCCGACGATG
* * *
19019561 CTTCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGAACATGTCCATGCCCAGGATGTGC
521 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGAACATGCCCATGCCCAGGATGTGC
* * * **
19019626 TGCCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGAA
586 TGCCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAA
* *
19019691 TGAACTTCGTATCCCTAAGTCAGCCCATGAAACGAGCGTGCGGGCTCTCAGCCAGCCAGAGGGGC
651 TGAACTTCGTATCCCTAAGTCAACCCATGAAACGAGCGTGCGGGCTCTCAGCCAGCCAGAGAGGC
19019756 AGGATGCGCAAGCCAGGGAGACGGGATGCGCAAGTCGT
716 AGGATGCGCAAGCCAGGGAGACGGGATGCGCAAGTCGT
* * *
19019794 GGATCGATATGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTT
1 GGATCGATA-GGCTAGTAGGT-GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
**
19019858 -TATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAC
64 CT-TGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACAAC
*
19019922 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC-AGGA-TTTTCTAAAATTTTTTC
127 TCG-TTTCTATTTTTCATGATTTTCAAAACTTTTTACAGTTCGA-GATTTTTCTAAAATTTTTTC
** *
19019985 GAAAGGAATTTTGGCCCCAAAATTGGTAGATGTGATACTTGTATTTTTGTTGACATGAACAAAAA
190 GAAAGGAATTTTGGCCCCAAAATTGGTAGACATGATACTTGTATTTTTATTGACATGAACAAAAA
* *
19020050 AATTCAGCTAAAAACTCGAAGTGCACAAGA-TTTGTGACCAATTGAAAAAAGTGTCCCCATTTCA
255 AATTCAGCTAAAAACCCGAAGTGCACAAGATTTTGTGACCAATTGAAAAAACTGTCCCCATTTCA
*
19020114 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
320 GACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGT
* *
19020179 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATC
384 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* *
19020244 ATGTGCGCATACACCC-CCCGGCCACC-CGATCCCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
449 ATGTGCGCACACACCCTCCCGGCC-CCTCGATCCCCGGAACCCCAACGCCGCCGGTCAGGTTCTC
* *
19020307 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA-GCCC
513 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGAACATGCCC-ATGCCC
* * *
19020371 AGGATGTGCTGTCGCAACCCTCAGTCTGATCCGATCTTACTCTGGGAATGAACTCCATATGCTTA
577 AGGATGTGCTGCCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCATATGCTTA
* * * * *
19020436 GATTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCTCTCAGTCGG
642 GACTGGGAATGAACTTC-GTATCCCTAAGTCAACCCATGAAACGAGCGTGCGGGCTCTCAGCCAG
19020500 CCAGAGAGGCAGGATGCGCAAG
706 CCAGAGAGGCAGGATGCGCAAG
19020522 AGAGGGATTG
Statistics
Matches: 655, Mismatches: 63, Indels: 19
0.89 0.09 0.03
Matches are distributed among these distances:
753 19 0.03
754 400 0.61
755 200 0.31
756 36 0.05
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (753 bp):
GGATCGATAGGCTAGTAGGTGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTCT
TGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCAAGACAACTCGT
TTCTATTTTTCATGATTTTCAAAACTTTTTACAGTTCGAGATTTTTCTAAAATTTTTTCGAAAGG
AATTTTGGCCCCAAAATTGGTAGACATGATACTTGTATTTTTATTGACATGAACAAAAAAATTCA
GCTAAAAACCCGAAGTGCACAAGATTTTGTGACCAATTGAAAAAACTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
CACACACCCTCCCGGCCCCTCGATCCCCGGAACCCCAACGCCGCCGGTCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGAACATGCCCATGCCCAGGATGTGC
TGCCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAA
TGAACTTCGTATCCCTAAGTCAACCCATGAAACGAGCGTGCGGGCTCTCAGCCAGCCAGAGAGGC
AGGATGCGCAAGCCAGGGAGACGGGATGCGCAAGTCGT
Found at i:19021014 original size:13 final size:13
Alignment explanation
Indices: 19020996--19021022 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
19020986 GCTGATCCTG
19020996 CTACCCCAACCCT
1 CTACCCCAACCCT
19021009 CTACCCCAACCCT
1 CTACCCCAACCCT
19021022 C
1 C
19021023 AAGCCGCGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.63, G:0.00, T:0.15
Consensus pattern (13 bp):
CTACCCCAACCCT
Found at i:19022497 original size:755 final size:752
Alignment explanation
Indices: 19021030--19022511 Score: 2139
Period size: 755 Copynumber: 2.0 Consensus size: 752
19021020 CTCAAGCCGC
19021030 GGATCGATAGGCTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTC
1 GGATCGATAGGCTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTC
* *
19021095 TTGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
66 TTGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTC
** * * *
19021160 GTTTTCTATTTTTCATGATTTTTTAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGGAA
131 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGAGATTTTCTAAAATTTTTTCGAAA
* * * * *
19021225 GGAGTTTTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAACAATT
196 GGAATTTTGGCCCCAAAATTGGTAGACATGATACTTGTATTTTTATTGACATGAACAAAAAAATT
* *
19021290 CAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACA
261 CAGCTAAAAACCCGAAGTGCACAAGATTTTGTGACCAATTGAAAAAACTGTCCCCATTTCAGACA
19021355 CTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCG
326 CTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCG
* * *
19021420 AGGTTTGATGAGGGATAGGGTGCCAATATAACGGCCAAGTACCAGCACCCATCATACATCATTTG
391 AGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCACACATCATGTG
* * * ** *** * * *
19021485 CGTACACACCGTTCTGGCCCCTCGATTGTCGGAACCCCAACGCTGCTGGTTAGGTTCTTCGACGA
456 CGCACAAACCG-CCCCGCCCCTCGATCCCCGGAACCCCAACGCCGCTGGTCAGGTTCTCCGACGA
* * * *
19021550 TGCTTCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGTCCATGCCCAGGATGT
520 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGGATGT
* **
19021615 GCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCGGCATGCTTAGACTGGG
585 GCTGCCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCACATGCTTAGACTGGG
* *
19021680 AATGAACTTCGTATGCCTAAGTCAGCCCATGAAACGAGCGTGCGGGCTCTCAGCCAGCCAGAGGG
650 AATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCTCTCAGCCAGCCAGA-GA
19021745 GCAGGATGCGCAAGCCAGGGAGACGGGATGCGCAAGTCGT
714 GCA-GATGCGCAAGCCAGGGAGACGGGATGCGCAAGTCGT
* * *
19021785 GGATCGATATGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTT
1 GGATCGATA-GGCTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
**
19021849 -TATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAC
65 CT-TGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAC
*
19021913 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTC-AGGATTTTCTAAAATTTTTTCG
129 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGA-GATTTTCTAAAATTTTTTCG
** *
19021977 AAAGGAATTTTGGCCCCAAAATTGGTAGATGTGATACTTGTATTTTTGTTGACATGAACAAAAAA
193 AAAGGAATTTTGGCCCCAAAATTGGTAGACATGATACTTGTATTTTTATTGACATGAACAAAAAA
* *
19022042 ATTCAGCTAAAAACTCGAAGTGCACAAGA-TTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAG
258 ATTCAGCTAAAAACCCGAAGTGCACAAGATTTTGTGACCAATTGAAAAAACTGTCCCCATTTCAG
*
19022106 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
323 ACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
* * *
19022171 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCA
387 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCACACATCA
* * *
19022236 TGTGCGCATAAACC-CCCCGCCCC-CGATCCCCGGAAACGCCAATGCCGC-GGTCAGGTTCTCCA
452 TGTGCGCACAAACCGCCCCGCCCCTCGATCCCCGG-AACCCCAACGCCGCTGGTCAGGTTCTCC-
19022298 GACGATGC-CCG-CGATTGGTGCCCCGAC-AA-ATAAAATGTGGGCACCAGCACATGCCCGAAGC
515 GACGATGCTCCGACGA-TGGTGCCCCGACGAAGA-AAAATGT-GGCACCAGCACATGCCC-AAGC
* * *
19022359 CCAAGGATGTG-TGCTATCGCCAACCCTCAGTCTGATCCGATCTTACTCTGGGAATGAACTCCAT
576 CC-AGGATGTGCTGC---CG-CAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCAC
* *
19022423 ATGCTTAGATTGGGAATGAAC-TCGTAATGCCTAAGTCAACCCATGAAA-TAGCGTGCGGGCTCT
636 ATGCTTAGACTGGGAATGAACTTCGT-ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCTCT
*
19022486 CAG-CGGCCAGAGAGCAGATGCGCAAG
700 CAGCCAGCCAGAGAGCAGATGCGCAAG
19022512 AGAGGGATCG
Statistics
Matches: 650, Mismatches: 61, Indels: 34
0.87 0.08 0.05
Matches are distributed among these distances:
750 1 0.00
751 12 0.02
752 47 0.07
753 43 0.07
754 98 0.15
755 345 0.53
756 25 0.04
757 79 0.12
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (752 bp):
GGATCGATAGGCTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTC
TTGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTC
GTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGAGATTTTCTAAAATTTTTTCGAAA
GGAATTTTGGCCCCAAAATTGGTAGACATGATACTTGTATTTTTATTGACATGAACAAAAAAATT
CAGCTAAAAACCCGAAGTGCACAAGATTTTGTGACCAATTGAAAAAACTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCACACATCATGTG
CGCACAAACCGCCCCGCCCCTCGATCCCCGGAACCCCAACGCCGCTGGTCAGGTTCTCCGACGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGGATGTG
CTGCCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCACATGCTTAGACTGGGA
ATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCTCTCAGCCAGCCAGAGAGC
AGATGCGCAAGCCAGGGAGACGGGATGCGCAAGTCGT
Found at i:19023766 original size:26 final size:27
Alignment explanation
Indices: 19023725--19023778 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
19023715 CGGTCTGATT
*
19023725 CTTAGACTTGGGAATGAACTCGGTATG
1 CTTAGACTTGGGAATGAACTCCGTATG
19023752 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACTTGGGAATGAACTCCGTATG
19023778 C
1 C
19023779 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTTGGGAATGAACTCCGTATG
Found at i:19024676 original size:26 final size:26
Alignment explanation
Indices: 19024647--19024699 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19024637 TCGGTCCGAT
19024647 CTTAGACTAGGAATGAAC-TCCGTATG
1 CTTAGACTAGGAATGAACGT-CGTATG
*
19024673 CTTAGACTGGGAATGAACGTCGTATG
1 CTTAGACTAGGAATGAACGTCGTATG
19024699 C
1 C
19024700 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACGTCGTATG
Found at i:19025139 original size:26 final size:26
Alignment explanation
Indices: 19025110--19025162 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19025100 CCGGTCTGAT
19025110 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19025136 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19025162 C
1 C
19025163 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19027389 original size:26 final size:26
Alignment explanation
Indices: 19027353--19027402 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19027343 GACTTAGGCT
* *
19027353 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAATCTAAGCA
19027379 TACGAAGTTCATTCCCAATCTAAG
1 TACGAAGTTCATTCCCAATCTAAG
19027403 ATTGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAATCTAAGCA
Found at i:19028321 original size:26 final size:26
Alignment explanation
Indices: 19028275--19028327 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19028265 GTTCACTTAG
19028275 GCATACAGAGTTCATTATCAGTCTAA
1 GCATACAGAGTTCATTATCAGTCTAA
* *
19028301 GCATACGGATGTT-ATTCTCAGTCTAA
1 GCATACAGA-GTTCATTATCAGTCTAA
19028327 G
1 G
19028328 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTATCAGTCTAA
Found at i:19028500 original size:26 final size:26
Alignment explanation
Indices: 19028462--19028512 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19028452 TGACTTAGGA
* * *
19028462 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGCTCATTCCCAGCCTAAGC
*
19028488 ATACGAAGCTCATTCCTAGCCTAAG
1 ATACGAAGCTCATTCCCAGCCTAAG
19028513 ATCAGACCGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGCTCATTCCCAGCCTAAGC
Found at i:19030237 original size:665 final size:665
Alignment explanation
Indices: 19028613--19030580 Score: 3366
Period size: 664 Copynumber: 3.0 Consensus size: 665
19028603 AGCATCGTCA
* * * * * *
19028613 GAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGG-GGCGGGGGTGTGCGCACATGATG
1 GAGAACCCGACCGACGGCATTAGGGTTCAGACGATAGGGGGTCG-GGGGGTGTGCGCACATGATG
** * * * *
19028677 TGTAATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTTGAGAACTC
65 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAAAACTC
*
19028742 ACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
130 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
**
19028807 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT-TTCTAGCTGAATTTTT
195 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAGTGTT-TAGCTGAATTTTT
* * * * * * *
19028871 TTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCATGTATCGGGCCAAAACTCCTTTCGAA
259 TTGTGCATGCCAACAAAAATACTAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* ** ** * *
19028936 AAAATTTTAAAAAATCCCGGACTGCAAAAAGTTTCCAAAATCGTGAAAAATAAAAAACGAGTCGT
324 AAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
*
19029001 CTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATG
389 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATG
19029066 GTATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTT
454 GTATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTT
19029131 GTGATCCCGTATGTCTGGCAACGTAGTGCCCGCCCGCCAGCTCTCCTGCTCGTTTCGTCGGTTGG
519 GTGATCCCGTATGTCTGGCAACGTAGTGCCCGCCCGCCAGCTCTCCTGCTCGTTTCGTCGGTTGG
*
19029196 TTTAGGCATACGGAGTTCATTCCTAGTCTAATATCGGATCAGACCCAGGGTTG-CGATAGTAGGA
584 CTTAGGCATACGGAGTTCATTCCTAGTCTAATATCGGATCAGACCCAGGGTTGCCGATAGTAGGA
19029260 TCATCAGAGCATTGCTG
649 TCATCAGAGCATTGCTG
*
19029277 GAGAACCCGACCGACGGCATTAGGGTTCTGACGATAGGGGGTCGGGGGGTGTGCGCACATGATGT
1 GAGAACCCGACCGACGGCATTAGGGTTCAGACGATAGGGGGTCGGGGGGTGTGCGCACATGATGT
19029342 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAAAACTCA
66 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAAAACTCA
19029407 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
131 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19029472 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAGTGTTTAGCTGAATTTTTTT
196 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAGTGTTTAGCTGAATTTTTTT
19029537 GTGCATGCCAACAAAAATACTAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
261 GTGCATGCCAACAAAAATACTAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
19029602 AATTTTAAAAAATCCCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
326 AATTTTAAAAAATCCCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
19029667 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGT
391 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGT
19029732 ATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGT
456 ATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGT
*
19029797 GATCCCGTATGTCTGGCAACGTAGTGCCCGCCCGCCAGCTCTCCTGCTCGTTTCATCGGTTGGCT
521 GATCCCGTATGTCTGGCAACGTAGTGCCCGCCCGCCAGCTCTCCTGCTCGTTTCGTCGGTTGGCT
19029862 TAGGCATACGGAGTTCATTCCTAGTCTAATATCGGATCAGACCCAGGGTTGCCGATAGTAGGATC
586 TAGGCATACGGAGTTCATTCCTAGTCTAATATCGGATCAGACCCAGGGTTGCCGATAGTAGGATC
*
19029927 GTCAGAGCATTGCTG
651 ATCAGAGCATTGCTG
19029942 GAGAACCCGACCGACGGCATTAGGGTTCAGACGATAGGGGGTCGGGGGGTGTGCGCACATGATGT
1 GAGAACCCGACCGACGGCATTAGGGTTCAGACGATAGGGGGTCGGGGGGTGTGCGCACATGATGT
19030007 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAAAACTCA
66 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAAAACTCA
19030072 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
131 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19030137 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAGTGTTTAGCTGAATTTTTTT
196 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAGTGTTTAGCTGAATTTTTTT
19030202 GTGCATGCCAACAAAAATACTAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
261 GTGCATGCCAACAAAAATACTAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
19030267 AATTTTAAAAAATCCCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
326 AATTTTAAAAAATCCCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
* * * * * *
19030332 CGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATAAATTTAAAAGCCATAAAAATGGC
391 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGT
* * * *
19030397 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
456 ATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGT
* * * * * * *
19030462 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCAGCTCGCCCGCTCGTTTCGTCGGTTGA
521 G-ATCCCGTATGTCTGG-CAACGTAGTGCCCGCCCGCCAGCTCTCCTGCTCGTTTCGTCGGTTGG
* * * * * *
19030527 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCCGACCAAGGGTTGC
584 CTTAGGCATACGGAGTTCATTCCTAGTCTAATATCGGATCAGACCCAGGGTTGC
19030581 AGCTGCAAGA
Statistics
Matches: 1241, Mismatches: 58, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
664 599 0.48
665 540 0.44
666 13 0.01
667 89 0.07
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (665 bp):
GAGAACCCGACCGACGGCATTAGGGTTCAGACGATAGGGGGTCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAAAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAGTGTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACTAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGT
ATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGT
GATCCCGTATGTCTGGCAACGTAGTGCCCGCCCGCCAGCTCTCCTGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCTAGTCTAATATCGGATCAGACCCAGGGTTGCCGATAGTAGGATC
ATCAGAGCATTGCTG
Found at i:19030727 original size:26 final size:26
Alignment explanation
Indices: 19030691--19030743 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19030681 GCTGATTTAG
19030691 GCATACGGAGTTCA-TTCCTAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
19030717 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
19030743 G
1 G
19030744 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:19031634 original size:26 final size:26
Alignment explanation
Indices: 19031605--19031657 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19031595 GTTGACTTAG
* *
19031605 GCATACGGAGTTTTTTCCCAGTCTAA
1 GCATACGAAGTTTATTCCCAGTCTAA
*
19031631 GCATACGAAGTTTATTGCCAGTCTAA
1 GCATACGAAGTTTATTCCCAGTCTAA
19031657 G
1 G
19031658 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTTATTCCCAGTCTAA
Found at i:19032113 original size:914 final size:908
Alignment explanation
Indices: 19029924--19032531 Score: 3604
Period size: 914 Copynumber: 2.9 Consensus size: 908
19029914 CGATAGTAGG
* * * * * *
19029924 ATCGTCAGAGCATTGCTGGAGAACCCGACCGACGGCATTAGGGTTCAGACGATAGGGGGTCG-GG
1 ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCAGACGATGGGGGGTCGAGG
*
19029988 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTC
66 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
19030053 ATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
131 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA
* *
19030118 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAG
196 GCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
* * *
19030183 TGTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACT-AGGATCATGTCTACCAAGTTTGGG
261 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-AATAAGGATCACGTCTACCAAGTTTGGG
* **
19030247 GCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTTGAAAATCGTGAA
325 GCCAAAAATCCTTCCGAAAAAATTTTAAAAAAACCCGAA-CGTAAAAAGTTTTGAAAATCGTGAA
* * * *
19030312 AAATAGAAAATGAGTCGTCTCGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATAAAT
389 AAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
19030377 TTAAAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
454 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
19030442 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCAGCTCGC
519 CCTATCAATCCACGACTTGCGCATCCCGTCTCTCTGGCAGA-GTAGTGCCCGCCCGCCCGCT-GC
* * *
19030507 CCGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT----T-GGAC-
582 CCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGATCGGACA
* * * * * *
19030566 --C-CGACCAAGGGTTGCAGCT-GCAAGATCTACAGCACGCAGAGAGGGACCCGGTCGATCCTCG
647 GACTGGACCAAGGGTTGC-GGTAGCAGGATCGACAGCACGCAGAGAGGGACCCGATCGATCCCCG
* * * * *
19030627 GCTTGCGCATCCCGCCCCTCTGGTCGACTGAGCACCCGCACGCTTGTTTCGTGGGCTGATTTAGG
711 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * *
19030692 CATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACC
776 CATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTGCCAGTCTAAGATCAGACCAGACC
* * * * * **
19030757 ACGGGTTGCGGCAGCACAAGCTGGGCTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGC
841 ACGGGTTACAGCAGCACAAGCTAGGCTCGGGCATGTGCTGGTACCGCATTTTTCCTCACCGGGGC
19030822 ACC
906 ACC
* * * * * * * *
19030825 ATCGTCGGATCATCGTCGGAGAACCTAACCGGCGGCATTCGGGTTCTGGCGATTGGGGGGGCCAG
1 ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCAGACGA-TGGGGGGTCGAG
* * *
19030890 GGGGTTTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCTCT
65 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
19030954 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
130 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
*
19031019 AGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
195 AGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
* * *
19031084 GTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAAATACAAGGATCACGTCTGCCAAGTTTG
260 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAAT--AAGGATCACGTCTACCAAGTTTG
* * *
19031149 GGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAATCCCGAACTGTAAAAAGTTTTGAAAATTGT
323 GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAA-CCCGAAC-GTAAAAAGTTTTGAAAATCGT
* * *
19031213 GAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATG
386 GAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** *
19031278 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGAATAAACCCACCTCC
451 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
19031343 CACCCTATCAATCCACGACCTGCGCATCCCGTCTCTCTGGTAAGAGTAGTGCCCGCCCGCCCGGC
516 CACCCTATCAATCCACGACTTGCGCATCCCGTCTCTCTGG-CAGAGTAGTGCCCGCCCGCCC-GC
19031408 TGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGATCGG
579 TGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGATCGG
* * * *
19031473 ACTAGACTGGACCAAGGGTTTCGGTAGCAGGATCGATAGCATGCAGAGAGGGACCCGACCGATCC
644 AC-AGACTGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGAGGGACCCGATCGATCC
* * * * *
19031538 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAACCCCCGTACGCTCCTTTCGTGGGTTGACTT
708 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
** *
19031603 AGGCATACGGAGTTTTTTCCCAGTCTAAGCATACGAAGTTTATTGCCAGTCTAAGATCAGACCAG
773 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTGCCAGTCTAAGATCAGACCAG
* *
19031668 ACCGA-GGGTTACAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACCG
838 ACC-ACGGGTTACAGCAGCACAAGCTAGGCTCGGGCATGTGCTGGTACCGCATTTTTCCTCACCG
19031732 GGGCACC
902 GGGCACC
* *
19031739 ATCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGATTC-GACGATCGGGAGGGTCG
1 ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGG-TTCAGACGAT-GGG-GGGTCG
** * * *
19031803 AGGGGGTGTGCGCACATGATGTGAAATGGGTGCTGGTTCTTGGCCCTTATAGTAGCCCCCTATCC
63 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
19031868 CTCATTAAACCTTGAGAACCCACTCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCA
128 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
* * *
19031933 GTAGCCATTAAAGTGTTTAAAATTGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTC
193 GTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
19031998 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAGATAAGGATCACGTCTACCAAGTTTT
258 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAATAAGGATCACGTCTACCAAG-TTT
* * * ** *
19032063 GGGG-AAAAAATCCATCCGAAAAAATTTTAAAAAAACCTGAATCGTAAAAAGTTTCAAAAATGGT
322 GGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAACCCGAA-CGTAAAAAGTTTTGAAAATCGT
19032127 GAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
386 GAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** *
19032192 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTTCCTAAACCCACCTAC
451 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
19032257 CACCCTATCTATCCAC-AGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCG-
516 CACCCTATCAATCCACGA-CTTGCGCATCCCGTCTCTCTGG-CAGAGTAGTGCCCGCCCGCCCGC
* *
19032320 T--CCGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAAATCAGA-C--
579 TGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGATCGG
*
19032380 -CAGA-TGG---AA-GGTTGCAGTAGCAGGATCGACAGCACGCAGA-AGGGGACCCGATCGATCC
644 ACAGACTGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGA-GGGACCCGATCGATCC
* * *
19032438 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATCGGTTGACTT
708 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
**
19032503 AGGCATACGGAGTTCATTTTCAGTCTAAG
773 AGGCATACGGAGTTCATTCCCAGTCTAAG
19032532 ATTGGACAGG
Statistics
Matches: 1509, Mismatches: 168, Indels: 61
0.87 0.10 0.04
Matches are distributed among these distances:
899 1 0.00
900 125 0.08
901 45 0.03
902 186 0.12
903 50 0.03
904 291 0.19
905 8 0.01
906 1 0.00
908 1 0.00
909 5 0.00
910 56 0.04
912 1 0.00
913 6 0.00
914 491 0.33
915 64 0.04
916 178 0.12
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (908 bp):
ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCAGACGATGGGGGGTCGAGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA
GCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAATAAGGATCACGTCTACCAAGTTTGGGG
CCAAAAATCCTTCCGAAAAAATTTTAAAAAAACCCGAACGTAAAAAGTTTTGAAAATCGTGAAAA
ATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCAATCCACGACTTGCGCATCCCGTCTCTCTGGCAGAGTAGTGCCCGCCCGCCCGCTGCCCGC
TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGATCGGACAGACT
GGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGAGGGACCCGATCGATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTGCCAGTCTAAGATCAGACCAGACCACGGG
TTACAGCAGCACAAGCTAGGCTCGGGCATGTGCTGGTACCGCATTTTTCCTCACCGGGGCACC
Found at i:19033379 original size:827 final size:826
Alignment explanation
Indices: 19031771--19033562 Score: 2574
Period size: 827 Copynumber: 2.2 Consensus size: 826
19031761 ACCTGACCGG
* * * *
19031771 CGGCATTGGGGATTCGACGATCGGGAGGGTCGAGGGGGTGTGCGCACATGATGTGAAATGGGTGC
1 CGGCATTGAGGTTTCGACGATCGGG-GGGTCAAGGGGGTGTGCGCACATGATGTGCAATGGGTGC
* * * * * * *
19031836 TGGTTCTTGGCCCTTATAGTAGCCCCCTATCCCTCATTAAACCTTGAGAACCCACTCCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
19031901 AGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTTTAAAATTGGGACACTT
130 AGAGCATTTGAAATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* * *
19031966 TTTTCGAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGATGAATTGTTTTGTGCATGCCAA
* * *
19032031 CAAAAAGATAAGGATCACGTCTACCAAGTTTTGGGGAAAAAATCCATCCGAAAAAATTTTAAAAA
260 CAAAAAGACAAGGATCACGTCTACCAAGTTTTGGGGAAAAAATCCATCCAAAAAAATTTCAAAAA
* * * **
19032096 AACCTGAATCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAAC
325 AACCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* *
19032161 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
390 TTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * *
19032226 GAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCTATCCACAGCTTGCGCATCCCGTCT
455 GAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
* * * * ** * *
19032291 CTCTGGCCGGCGTAGTGCCTGCCCGCCCGTCCGCTCATTTCGTTGGTTGGCTTAGGCATACGGAG
520 CTCTAGACGGCATAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAG
** **
19032356 TTCATTCCCAGTTTAAAATCAGACCAGATGGAAGGTTGCAGTAGCAGGATCGACAGCACGCAGAA
585 TTCATTCCCAGCCTAAAATCAGACCAGACCGAAGGTTGCAGTAGCAGGATCGACAGCACGCAGAA
*
19032421 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
650 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
*
19032486 GTTTCATCGGTTGACTTAGGCATACGGAGTTCATTTTCAGTCTAAGATTGGACAGGACCGAGGGT
715 GTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTGGACAGGACCGAGGGT
19032551 TGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCC
780 TGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCC
* * *
19032598 CGGCATTGAGGTTTCGACGATCAAGGGGGTCAAGGGGCTGTGCGCACATGATGTGCGATGGGTGC
1 CGGCATTGAGGTTTCGACGATC-GGGGGGTCAAGGGGGTGTGCGCACATGATGTGCAATGGGTGC
*
19032663 TGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
19032728 AGGGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAATGGGGACACTT
130 AGAGCATTTGAAATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* ** **
19032793 TTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTTAGATGAATTGTTTTGTGTGTGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGATGAATTGTTTTGTGCATGCCAA
* * * *
19032858 CAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCTAGAAATCCTTCCAAAAAAATTTCAAAA
260 CAAAAAGACAAGGATCACGTCTACCAAGTTTTGGGG-AAAAAATCCATCCAAAAAAATTTCAAAA
* * **
19032922 AATTCC-GAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGCC
324 AA-ACCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* *
19032986 ACTTCACGTGAAGGCTTGAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACG
388 ACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACA
19033051 CAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
453 CAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
* *
19033116 CTCTCTAGACGGCATAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCGTACGA
518 CTCTCTAGACGGCATAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
* * * ** *
19033181 AGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACATCACGCA-
583 AGTTCATTCCCAGCCTAAAATCAGACCAGACCGAAGGTTGCAGTAGCAGGATCGACAGCACGCAG
* * *
19033245 AAGGGGGACCCGA-CTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCAT
648 AA-GGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* *
19033309 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC-CTAGTCTAAGATTGGACCGGACAC
711 GCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCTC-AGTCTAAGATTGGACAGGAC-C
** *
19033373 -AGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGTCGATCCC
774 GAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCC
* * * ** * * *
19033425 CGTCATT-AGGGTTTC-AGCGACCGGGGGGGCCGGGGGGTGTGCCCAAATGATGTGCAATGGGTA
1 CGGCATTGA-GGTTTCGA-CGATCGGGGGGTCAAGGGGGTGTGCGCACATGATGTGCAATGGGTG
* * *
19033488 CTGGTACTTGGCCCTTATGTTGGCCGCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
19033553 AAGAGGATTT
129 AAGAGCATTT
19033563 TAAAAAATCC
Statistics
Matches: 855, Mismatches: 101, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
826 114 0.13
827 736 0.86
828 5 0.01
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (826 bp):
CGGCATTGAGGTTTCGACGATCGGGGGGTCAAGGGGGTGTGCGCACATGATGTGCAATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAAATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGATGAATTGTTTTGTGCATGCCAAC
AAAAAGACAAGGATCACGTCTACCAAGTTTTGGGGAAAAAATCCATCCAAAAAAATTTCAAAAAA
ACCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
AAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
TCTAGACGGCATAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGT
TCATTCCCAGCCTAAAATCAGACCAGACCGAAGGTTGCAGTAGCAGGATCGACAGCACGCAGAAG
GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
TTTCATCGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTGGACAGGACCGAGGGTT
GCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCC
Found at i:19034889 original size:26 final size:26
Alignment explanation
Indices: 19034852--19034904 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19034842 GTTGACTTAG
*
19034852 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19034878 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19034904 G
1 G
19034905 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19036947 original size:376 final size:363
Alignment explanation
Indices: 19036254--19036974 Score: 1012
Period size: 376 Copynumber: 2.0 Consensus size: 363
19036244 GTGAAGGCTT
19036254 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* *
19036319 GCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * * **
19036384 TGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTACTCTAAGATTGGA
131 TGACCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGAAGTTCATTCCCACTCTAAGATCAGA
* * * * * *
19036449 CCGAGCCGAGGGTTGCGGCAACAGGATCAACAGCACGCAGAGGGGGACCCGGCCGATCTCGGGCT
196 CCGAGCCGAGGGTTGCGACAACAGGATCAACAGCACGCAGAGAGGGACCCAGCCGATCCCCGACT
* * * *
19036514 TGCGCATCTCGCCCCTTTGGCCGACTGAGCACCCGCAAGCTCGTTTCATGTGTTGACTTAGGCAT
261 TGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCAAGCTCATTTCATGGGTTGACTTAGGCAT
*
19036579 ACGGAGTTCATTCCCAGTCTATGATGTACACTTTTTTCA
326 ACAGAGTTCATTCCCA-TCTATGATGTACACTTTTTTCA
* * *
19036618 AAGGGATCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * *
19036683 GCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGTCGACGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-
* *
19036748 TGCCTGCCCGCCCGCCTGCCTGCTCGTTTCATCGGTTGGCTTAGGCATATGAAGTTCATTCCCAG
130 -G--T----GACCG-C--CC-GCTCGTTTCATCGGTTGGCTTAGGCATATGAAGTTCATTCCCAC
* * * *
19036813 TCTAAGATCAGACCG-GATCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGAGAGGGACCCAG
184 TCTAAGATCAGACCGAG-CCGAGGGTTGCGACAACAGGATCAACAGCACGCAGAGAGGGACCCAG
* * *
19036877 CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGACTGAGCACCCGCACGCTCATTTCGTGGG
248 CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCAAGCTCATTTCATGGG
19036942 TTGACTTAGGCATACAGAGTTCATTCCCATCTA
313 TTGACTTAGGCATACAGAGTTCATTCCCATCTA
19036975 ATATCAGATC
Statistics
Matches: 311, Mismatches: 33, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
364 121 0.39
366 1 0.00
368 1 0.00
372 4 0.01
373 1 0.00
375 7 0.02
376 176 0.57
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (363 bp):
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
TGACCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGAAGTTCATTCCCACTCTAAGATCAGA
CCGAGCCGAGGGTTGCGACAACAGGATCAACAGCACGCAGAGAGGGACCCAGCCGATCCCCGACT
TGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCAAGCTCATTTCATGGGTTGACTTAGGCAT
ACAGAGTTCATTCCCATCTATGATGTACACTTTTTTCA
Found at i:19037834 original size:26 final size:27
Alignment explanation
Indices: 19037805--19037858 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
19037795 TGTGACTTAG
*
19037805 GCATACGGAGTTCATTCCCAGT-CTAA
1 GCATACAGAGTTCATTCCCAGTCCTAA
* **
19037831 GCATCCAGAGTTTGTTCCCAGTCCTAA
1 GCATACAGAGTTCATTCCCAGTCCTAA
19037858 G
1 G
19037859 ACAAGGCCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (27 bp):
GCATACAGAGTTCATTCCCAGTCCTAA
Found at i:19038731 original size:26 final size:26
Alignment explanation
Indices: 19038702--19038754 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19038692 GTTGACTTAG
*
19038702 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
19038728 GCATACAGAGTTGATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19038754 G
1 G
19038755 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19042264 original size:25 final size:26
Alignment explanation
Indices: 19042235--19042286 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19042225 GTTGACTTAG
*
19042235 GCATACGGAGTTCATT-CTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19042260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19042286 G
1 G
19042287 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19043179 original size:26 final size:26
Alignment explanation
Indices: 19043137--19043267 Score: 210
Period size: 26 Copynumber: 5.0 Consensus size: 26
19043127 GTTGACTTAG
*
19043137 GCATACGGCA-TTTATTCCCAGTCTAA
1 GCATACGG-AGTTCATTCCCAGTCTAA
*
19043163 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19043189 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19043215 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19043241 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19043267 G
1 G
19043268 ATTGGACCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
25 1 0.01
26 96 0.99
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19044131 original size:26 final size:26
Alignment explanation
Indices: 19044102--19044154 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19044092 GTTGACTTAG
19044102 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19044128 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19044154 G
1 G
19044155 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19048524 original size:26 final size:26
Alignment explanation
Indices: 19048482--19048534 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19048472 GTTGATTTAG
*
19048482 GCATACGGACTTTATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
19048508 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
19048534 G
1 G
19048535 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:19048657 original size:881 final size:890
Alignment explanation
Indices: 19046726--19049753 Score: 3897
Period size: 881 Copynumber: 3.4 Consensus size: 890
19046716 TTACTTAGGG
* * * *
19046726 ATACGGAGTTCGTTGCCAGTCTAAGATCAAACC-AGACCGAGGGTTGCGACAGCACATGCTAGAC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCGA-ACCGAGGGTTGCGACAGCACATGCTGGGC
* *
19046790 TCGGACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
65 TCGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * *
19046855 CCTAACCGGCGGCATTGGGGTTCCGACGACCGGGGAGGCCGAGGGGAGTGTGCGCACATGATGTG
130 CCTAACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTG
* * *
19046920 CGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCATATCCCTCACCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGT-CTTGG--C---TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19046985 A-CCCCTTAAAGAGCATTGGAGATTTTATAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19047049 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTA
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTA
*
19047114 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTTGAAAAA
383 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCGAAAAA
* *
19047179 ATTTTAAAAAATCCCGAACCGCAAAAAGATTT-GGAAATCGTGAAAAATAGAAAACGAGTCGTCT
448 ATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
19047243 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-
* *
19047308 ATTGGCATGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTT-C
576 --TGG-AT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
19047372 GCAACCCGTCTCCCTAGCCGACGTAGTGCCCGCCCGCTTGCCCTCCCGCTCGTTTCGTCGGTTGG
637 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCT-CCCT-CCGCTCGTTTCGTCGGTTGG
* * * ** *
19047437 CTTAGGCATACGGAGATCATTACCAATGTAAGATCAGACCAGATCGAGGGTTTTGGTAGCAAGAT
700 CTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGAT
* * * *
19047502 CGGTAGCACGTAGAGGAGGACCCGACCGAT-CCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCT
765 CGGCAGCACGTAGAGGGGGACCCGACCGATCCCCCG-CTTGCGCATCCCGCCCCTCTGG-CAGCT
* * *
19047566 GAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGC
828 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* ** * * * *
19047629 ATACAGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCAACAGCAAATACTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGACAGCACATGCTGGGCT
* * * *
19047694 CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGTTGGAGAAC
66 CGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
*
19047759 CTAACCGACGGCATTGGGGTTCC-AGCGATCGGGGGGGCC-AGGGGGGTCTGCGCACATGATGTG
131 CTAACCG-CGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTG
*
19047822 CAAT-GG-G-T-G-C-TGG-TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
194 CGATGGGTGCTGGTCTTGGCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * *
19047880 TTAAAGAGTATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTCTGAAATGGCGAC
259 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
19047945 ACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATG
* * * ** *
19048010 CCAAAAAAAATACAAGGATCATGTCTA-CATTGTTTAGGGCCAAAAATCCTTTCAAAAAAATTTT
389 CCAAAAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACGCCTTTCGAAAAAATTTT
* * * *
19048074 AAAAAAT-TCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCAT
453 AAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
19048138 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-G-GG-T-A
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTGGATCA
* *
19048199 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTTT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * **
19048264 CTTTGGCTGGCGTAGTGCCCGCCCGCCCTCCCGTCCGCTCATTTCGTCGGTTCCCTTAGGCATAC
648 CTCTGGCCGGCGTAGTGCCCGCCCG-CCTCCC-TCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
19048329 GGAGTTCATTGCCAGTCTAAGATCGGACCAAATCGAGGGTTGCGGTAGCAGGATCGGCAACACAT
711 GGAGTTCATTACCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGATCGGCAGCACGT
* * *
19048394 AGAGGGGGACCCGATCGATCCCCCGCTTGCGCATCCCACCCCTCTGGCTAGCTGAACGCCCGCAC
776 AGAGGGGGACCCGACCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGC-AGCTGAGCGCCCGCAC
* * *
19048459 GCTCGTTTCGTGGGTTGATTTAGGCATACGGACTTTATTCCCAGTCTAAGC
840 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
19048510 ATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGATAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGACAGCACATGCTGGGCT
* * *
19048575 CGGACATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAAC
66 CGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
* * *
19048640 CTGACCTGCGACATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGC
131 CTAACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGC
*
19048705 GATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGT-CTTGG--C---TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19048770 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAACGTGTCTAAAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * ** *
19048835 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTTGAGTTTCTAACTGAAAGTTTTTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTAT
* * *
19048900 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCAAAACGCCTTTCGAAAAAA
384 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCGAAAAAA
* * *
19048965 TTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
449 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
19049030 CCATTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG---
* * *
19049095 TGGCATGCTGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCATGGCTTGCGC
576 TGG-AT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * *
19049160 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTTCGTCCGCCCACC-CATTCGTTTTGTCGGTTGGC
639 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCTCCCTCCGC--TCGTTTCGTCGGTTGGC
* * * * * * *
19049224 TTAGCCATACGTAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACAGCAGCAGGATC
701 TTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGATC
* * * * *
19049289 GACAGTACGTAGAGGGGGA-CCTAGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTG
766 GGCAGCACGTAGAGGGGGACCCGA-CCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCAG-CTG
* ** *
19049353 AGCGCCCGTATACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
829 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *
19049415 ATACGAAGTTCATTCTCAGCCTAAGATCAGACCGAACC----G-T-CGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGACAGCACATGCTGGGCT
* * * *
19049474 CGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAG-AAC-T---TG-A-
66 CGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
* * * *
19049532 -T---CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTACGCACATAATGTAC
131 CTAACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGC
* * *
19049591 GATGGGTGCTGTTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAGCCGCGAGAACTCACA
195 GATGGGTGCTGGT-CTTGG----C-TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19049656 CTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19049721 GTGACACTTTTTTCAAATGGTCCCAAAATCTTG
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTG
19049754 CCATGAAACT
Statistics
Matches: 1865, Mismatches: 215, Indels: 107
0.85 0.10 0.05
Matches are distributed among these distances:
880 52 0.03
881 355 0.19
882 37 0.02
883 2 0.00
884 3 0.00
885 1 0.00
886 169 0.09
887 1 0.00
888 36 0.02
889 146 0.08
890 186 0.10
891 1 0.00
893 1 0.00
894 1 0.00
895 221 0.12
896 106 0.06
897 2 0.00
898 3 0.00
899 65 0.03
900 2 0.00
901 5 0.00
902 27 0.01
903 146 0.08
904 7 0.00
905 290 0.16
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGACAGCACATGCTGGGCT
CGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
CTAACCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTCTTGGCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCGAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTGGATCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCTCCCTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTACCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGG
GGGACCCGACCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCAGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19049416 original size:26 final size:26
Alignment explanation
Indices: 19049387--19049439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19049377 GTTGACTTAG
*
19049387 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
*
19049413 GCATACGAAGTTCATTCTCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
19049439 G
1 G
19049440 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:19050147 original size:26 final size:26
Alignment explanation
Indices: 19050111--19050163 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19050101 GTTGACTTAG
19050111 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19050137 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19050163 G
1 G
19050164 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19051497 original size:902 final size:903
Alignment explanation
Indices: 19049749--19054405 Score: 6327
Period size: 902 Copynumber: 5.2 Consensus size: 903
19049739 GGTCCCAAAA
*
19049749 TCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** * * * * *
19049814 GGCATTGGCACATATAAATATGAAGATGTGCATAAACCCACCGACAACCATATCGATCCACGGCT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * ** * ** ** *
19049879 TGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCTTGCTCGTTCGCTCGTTTCGTCAGT
131 TGCACATCCCGTCTCTCTGGCCAGCGTAGTACCCGCCCTCCCGCCCGCACGCTTATTTCGTCGGT
* ** * * *
19049944 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGACTGAGGGTTGCGGCAGCAG
196 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACAGCAGCAC
* * * * **
19050009 GATTGGCAGGATGCA-GAGAGGGACCC-GCCCAATCCCCGGCTTACGCATCCC-ACCC-CATTGG
261 GATCGGCAGCATGCACAAG-GGGACCCAG-CCGATCCCCGGCTTGTGCATCCCGACCCTC--TGG
* * *
19050070 CCGACTGAGCGCGCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
322 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
* * *
19050135 AAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATTGGACCGAGGGTTACGACAGCACATGCTG
387 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTG
* * *
19050200 GGCTGGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATTACCGGA
452 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATTGCCGGA
* * * * *
19050265 GAACCTGATCGCCGACATTAGGGTTCGGGCGATCAGGGGGGTCGGGGGGTGTGCGCACATGATGT
517 GAACCTGACCGCCGACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGT
*
19050330 GCGATGGGTGCT-GAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
582 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19050394 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
647 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
*
19050459 TGGGGACATTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
712 TGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
*
19050524 CTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
777 CTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
19050589 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
842 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
19050651 TCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGACTTTACAAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19050716 GGCATTGGCGTGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19050781 TGCGCATCCCGTCTCTTTGGCCAGCGTAGTACCCGCCCTCCCGCCCGCACGCTTATTTTGTCGGT
131 TGCACATCCCGTCTCTCTGGCCAGCGTAGTACCCGCCCTCCCGCCCGCACGCTTATTTCGTCGGT
* * * *
19050846 TGGCTTAGGCACACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACAGCAGCAC
196 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACAGCAGCAC
* * *
19050911 GATCGGCAGCATGCACAAGGGGACCCAGCCGATCCCCGGCCTATGCATCCCGACCCTCTGGCAGG
261 GATCGGCAGCATGCACAAGGGGACCCAGCCGATCCCCGGCTTGTGCATCCCGACCCTCTGGCCGG
* *
19050976 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
326 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* ** * * ** * * *
19051041 ACACACAATTCATTCCCAGTCCAAGATCGGACCAGACTGAGGGTTACGGTAGCACATGTTGGGCT
391 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCT
* * *
19051106 CGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCTAGAGCATTACCGGAGAAC
456 CGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATTGCCGGAGAAC
* * * * *
19051171 CTGATCGCCGACATTAGGGTTCGGGCGATCGGGGGGGTCAGGGGGTGTGCGCACATGATGTGCGA
521 CTGACCGCCGACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
*
19051236 TGGGTGCT-GAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
586 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
19051300 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
651 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
19051365 GACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTCTGC
716 GACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTCTGC
*
19051430 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATT
781 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
19051495 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
846 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
19051553 TCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19051618 GGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19051683 TGCGCATCCCGTCTCTTTGGCCAGCGTAGTACCCGCCCTCCCGCCCGCACGCTTATTTCATCGGT
131 TGCACATCCCGTCTCTCTGGCCAGCGTAGTACCCGCCCTCCCGCCCGCACGCTTATTTCGTCGGT
* ** *
19051748 TGGCTTAGGCAGAAAGAGTTCATTCCCAATCTAAGATCGGACCGGA-TCGAGGGTTACAGCAGCA
196 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTACAGCAGCA
* * * *
19051812 CGATCGGCAGCATGCAGAAGGGGACCCAGCCGATCCTCGGCCTGTGCATCCCGACCCTCTGGCAG
260 CGATCGGCAGCATGCACAAGGGGACCCAGCCGATCCCCGGCTTGTGCATCCCGACCCTCTGGCCG
*
19051877 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
325 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* ** * * * * * *
19051942 CACACACAATTCATTCCCAGTCCAAGATCAGACTGGACTGAGGGTTACGGTAGCACATGTTGGGC
390 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGC
* * *
19052007 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATTGCCGAAGAA
455 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATTGCCGGAGAA
* * *
19052072 ACTGACCGAC-AGCATTGGGGTTCCAACGATCGGGGGGG-CTGAGGGGGTGTGCGCACATGATGT
520 CCTGACCGCCGA-CATTGGGGTTCCGACGATCGGGGGGGTC-G-GGGGGTGTGCGCACATGATGT
* * * *
19052135 GTGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCAAGAACTCA
582 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19052200 CACCCCCTTAAAAAGCATTTGAGATTTAACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
647 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* * *
19052265 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTAGCTGAATTTTTTT
712 TGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
* *
19052330 AC-GCATGGCAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
777 -CTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * *
19052393 AATTTTTAAAAAATCCCGAACCGCAAATAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
841 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
19052456 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
19052521 GGCAATGGCACGCAGCAATATGAAGATGTGCCTAAACCCACCAACCATCTTATCGATCCACGGCT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * **
19052586 TGCACATTCGGTCTCTCTGGCCAGCGTAGTGCCCG-CTTGCCCGCCCGC-CTGC-TCGTTCGAT-
131 TGCACATCCCGTCTCTCTGGCCAGCGTAGTACCCGCCCT-CCCGCCCGCAC-GCTTATTTCG-TC
* * * * **
19052647 GGTTGGCTTAGCCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT-GTGACA
193 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACAG-CA
* * * ** * * * *
19052711 GCAAGATCGGTAGCACG-TGAGGGGGACCCAGCCGATCCTCGGTTTGTGCATCCCGCCCCTCTGG
257 GCACGATCGGCAGCATGCACAAGGGGACCCAGCCGATCCCCGGCTTGTGCATCCCGACCCTCTGG
* ** *
19052775 CCGACTGAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCT
322 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
** * * *
19052840 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTACAGCAGCACATGCTG
387 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTG
* * * * * *
19052905 TGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCCCCTGGGCACCATCACCAGAGCATCGCCGGA
452 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATTGCCGGA
* * * * * * *
19052970 GAACCTGACTGACGGCGTTGGGGTTCCAACGATCGGGGGGGTCGGGGGGTATGCGCGCACATAAT
517 GAACCTGACCGCCGACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGG--TGTGCGCACATGAT
* *
19053035 GTGCGATGGGTGCTGGTACTTGGCCATTATATTGG-CCCCTAT-CCTTATCAAACCTCGAGAACT
580 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * * *
19053098 CACACTCCCTTAAAGAGCAATTGAGATTTTATAGGTTTGCTTCTAGTAGCCATTAAAGTGTCTGA
645 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
* * *
19053163 AATGAGGACACCTTATT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-T-T
710 AATGGGGACA-CTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGT
* *
19053225 TTTGTGCATG-C-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGA
774 TTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* *
19053288 AAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCA
839 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC-
19053353 G
903 G
* *
19053354 -CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGACTTTACAAGCCAT-AAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * * *
19053417 GGCATTGGCATGGAGAAATATGTAGCTATGCCTAAACCCACCTACCACTCTATCTATCCACAGCT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
19053482 TGCACGTCACGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGTCCGCTCG----TTTCGTCGGT
131 TGCACATCCCGTCTCTCTGGCCAGCGTAGTACCCGCCCTCCCGCCCGCACGCTTATTTCGTCGGT
* * * ** * *
19053539 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACTAAGGGTTGTAGTAGCAG
196 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACAGCAGCAC
* * * * * *
19053604 GATCGGCAGCACGTACAGGGGGACCC-GATCGATCCCCGACTTGCGCATCCC-ACCCCTCTGGCC
261 GATCGGCAGCATGCACAAGGGGACCCAG-CCGATCCCCGGCTTGTGCATCCCGA-CCCTCTGGCC
* * ** *
19053667 GGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGATCATTCCCAGTCTAA
324 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
19053732 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATACTGGG
389 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * * *
19053797 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCGTCGGAGA
454 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATTGCCGGAGA
* * * * ** * *
19053862 ACCTGACCAACGGA-A-TGGGGTTCTGATGATCAAGGGTGCCGGGGGGGTGTGCCGCACATGATG
519 ACCTGACC-GCCGACATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGTG-CGCACATGATG
19053925 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
581 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
19053989 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
646 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
* * ** *
19054054 ATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTGTTG
711 ATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTT
* * * * * * * * **
19054119 TGTACATGCCAACCAAAATAGAAGGATTACATCTACCAAGTTTGGGGCTAAAACTCCTTTTGAAA
776 TCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * *
19054184 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACTAGTCG
841 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
19054247 CCTTGCGACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19054311 GTCATTGGCACGTAGAAATATGAAGATGTGCCT-AACCCAACCTACCACCCTATCGATCCATGGC
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC-ACCTACCACCCTATCGATCCACGGC
* ** *
19054375 ATGTGCATCCCGTCTCTCTGGCCGGCGTAGT
130 TTGCACATCCCGTCTCTCTGGCCAGCGTAGT
19054406 GCCTGCTCGT
Statistics
Matches: 3375, Mismatches: 339, Indels: 90
0.89 0.09 0.02
Matches are distributed among these distances:
888 4 0.00
889 148 0.04
890 350 0.10
891 2 0.00
892 19 0.01
893 9 0.00
894 237 0.07
896 83 0.02
897 163 0.05
898 10 0.00
899 1 0.00
900 133 0.04
901 261 0.08
902 1462 0.43
903 312 0.09
904 180 0.05
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCACATCCCGTCTCTCTGGCCAGCGTAGTACCCGCCCTCCCGCCCGCACGCTTATTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACAGCAGCAC
GATCGGCAGCATGCACAAGGGGACCCAGCCGATCCCCGGCTTGTGCATCCCGACCCTCTGGCCGG
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATTGCCGGAGAAC
CTGACCGCCGACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
GACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTCTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
Found at i:19052846 original size:26 final size:26
Alignment explanation
Indices: 19052816--19052868 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19052806 GTTGACTTAG
*
19052816 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19052842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19052868 G
1 G
19052869 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19053746 original size:26 final size:26
Alignment explanation
Indices: 19053706--19053758 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19053696 GTTGACTTAG
*
19053706 GCATATGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
*
19053732 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
19053758 G
1 G
19053759 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:19056156 original size:26 final size:26
Alignment explanation
Indices: 19056116--19056168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19056106 GTTGACTTAG
19056116 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
* *
19056142 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
19056168 G
1 G
19056169 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:19057804 original size:896 final size:896
Alignment explanation
Indices: 19055384--19065661 Score: 12366
Period size: 890 Copynumber: 11.7 Consensus size: 896
19055374 ACTTGATCGA
* * *
19055384 CGGCATTAGAGTTCCGACGATCGGGGTGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
1 CGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
19055449 GGTACTTGGCCCTTATATTTGCCTCCTATCCGTCATCAAACCTCGAGAACTCACACACCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAAC-CCCTTAAA
* *
19055514 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
129 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
19055579 TTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTACCTGAATAGTTTTT-TGCATGCCAA
194 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAA
* * *
19055643 CAAAAATACAAGGATCACGTTTACAAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAA
258 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * *
19055708 TTCCCAAACTGCAAAAA-TCTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
323 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
19055772 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGTA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
* *
19055837 GAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
19055902 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCCTCGATTGGGTTAGGCATACGGAG
518 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
19055967 TTCATTCCCAGTCTAAGAT-TGAACC-GAACCGAGGGTTGTGGCAGCAAGATCGGCAGCACACAG
583 TTCATTCCCAGTCTAAGATCAG-ACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * ** * * ** * *
19056030 AGCGGGACTCGGCCGATCCCCGGCTTGCACAT-CTCGCCCCTCTGGTCGGTTGAGCGCCTGCTCG
646 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGACTGAGCGCCCGCACG
* * *
19056094 TTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAATCTAAGCATACGGAGTTCATTC
710 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
19056159 CCAGTCTAAGATCGGATCGGGCTGAA-GGTTTCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
775 CCAGTCTAAGATCGGA-CAGAC-AAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
** *
19056223 TGCCGTATTTTTCTTCATCGAGGCACCA---TC---G---C--CGGAGAACCTGACCGG
838 TGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
*
19056271 CGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
1 CGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
19056336 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATAGCCCCTTAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-AACCCCTTAA
*
19056401 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGACACTT
128 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
19056466 TTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTTTGCATGCCAA
193 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
19056531 TAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
258 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** * * * *
19056596 ATCTTGAACTGCAAAAAGTTTCAAAAATCGTG----A-A-AAAATGAGTCATCTTACCATGAAAC
323 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
19056655 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACGTA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
* * *
19056720 GAAATATGAAGATGTGCCTAAACCCACCTACCATTCC-ATCGATCCACGACTTGCGCATCCCGTT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
19056784 TCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCAGTTGGCTTAGGCATACGGA
517 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * *
19056849 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAAGATCAGTAGCATGCGGA
582 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * * *
19056914 GGGGTACCCGGTCGATCCCCGACTTGCGCGTCCTGCCCGTC-GGCCGACTGAGCGCCCGCACGGT
647 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCT
* * * * *
19056978 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCTCAGTCTAAGCATACGAAGTTCATTTCG
712 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
19057043 AGTCTAAGATCGGATCAGACAAAGGGTTACGGCACCACATACTAGGCTCGGGCATGTGCTGGTGC
777 AGTCTAAGATCGGA-CAGACAAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * ** * *
19057108 CACATTTTTCTTTGTCGAGGCACCACCGTCGAAGCATCACCGGAGAACCTGACTGA
841 CACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
19057164 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
1 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * ** *
19057229 GTACTTGGCCCTTATATTGGCCCCTTATCCTTCATCAAACCTCGAGAACTCAAATGCCTTATAGA
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCTTAAAGA
* * *
19057294 GTATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAATGGGGACACTTTTT
131 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
19057359 TCGAATGGTCACAAAAAT-TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATA
196 TCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
19057423 AAAATAGAAGGATCACGTCTACCAAGTTTGCGGCCAAAAATCCTTCTGAAAAAATTTTGAAAAAT
260 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
19057488 CCCGAATCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
325 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
19057553 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACATAGA
390 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
* * *
19057618 AATATGAAGATGTGCCTAAACCCACCTACCATTCC-ATCGATCCACGACTTGCGCATCCCGTTTC
455 AATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
19057682 TCTGGCCAGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGT
519 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * ** *
19057747 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAAGATCGGTAGCATGTGGTGG
584 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * *
19057812 GGTACCCGATCGATCCCCGACTTGCGCGTCCTGCCCCTC-GGCCGACTGAGCGCCCGCACGGTCG
649 GGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
* * * ** ***
19057876 TTTCATGGGTTGACTTAGGCATATGGAGTTCATTCTCAGTCTAAGCATACAAAGTTCATTTTGAG
714 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
19057941 TCTAAGATCGGATCAGACAAAGGGTTACGGCACCACATACTAGGCTCGGGCATGTGCTGGTGCCA
779 TCTAAGATCGGA-CAGACAAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
* * * *
19058006 CATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGT-GAGAAAACCTGACCGG
843 CATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCG-GAGAACCTGACCGG
* * *
19058060 CGGCATTGGGGTTCCAATGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
1 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
19058125 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-AACCCCTTAAAG
* *
19058190 AGTATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
130 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
19058255 TTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
195 TTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
19058320 AAAAATACAAGGATCACGTCTACCATGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
259 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * * *
19058384 TCTCGAACCGTAAAAAGTTTAAAAAATCAT-AAAAATTA-AGAAACGAGTCATCTAGCCATGAAA
324 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA-TAGA-AAACGAGTCGTCTTGCCATGAAA
* * * *
19058447 CTTTACGTGAAGGCTTAAGGGACCATTGTATGCATTTGCAAGCCATAAAAATGGCATTGGCACCT
387 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * * *
19058512 AAAAATATGAATATGTGCCT------A---A--A-CC---C-A---AC-GCTTCCGCATCTCGTC
452 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
19058557 TCTTTGGCCAGCGTAGT----GCCCG--C-CC-GCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
517 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * *
19058614 GATCATTCCAAGTTTAAGATCAGACCAAACCGAAGGTTGCGGTAGCAGGATCGGCAGCACACAGA
582 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * ** * * ** *
19058679 AGGGGAGCCGGCCGATCCCTGGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
647 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGC-
*
19058744 TC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG-AT-C--AG---A---C
711 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* *
19058798 C-G-----GA-C---C-G----AGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGC
776 CAGTCTAAGATCGGACAGACAAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *
19058848 CACATTTTTCTTCG-CCAGGGCACCATCGTCGGTGCATCGTCGGGGAGCCTGACCAG
841 CACATTTTTCTTCGTCGA-GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * * *
19058904 TGGAATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGC
1 CGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
19058969 TGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-AACCCCTTAA
*
19059034 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
128 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
19059099 TTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCCTGCCAA
193 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
19059164 GAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAGAATTTTAAAAA
258 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
19059229 ATCCCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
323 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
19059294 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
* *
19059359 GAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * **
19059424 CTCTGGTCGGCATAGT----GCCCG--C-CC-GCTCGTTTGGTCGGTTGGCTTAGGCATATAGAG
518 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * ** * * *
19059481 TTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGCGGTAGTGGGGTTGGCAGCACGTAGAG
583 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
*
19059546 GGGGACCCGAT-GAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGATTGAGCGCCCGCACGCT
648 GGGGACCCGATCG-ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCT
*
19059610 CGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
712 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * ** * * * *
19059675 AGTCTATGATCAGACCAAACTGAGGGTTGCGGCAGCACATGCTGGGCTGGGGCATTTGCTGGCGT
777 AGTCTAAGATCGGA-CAGACAAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * * *
19059740 CGCATTTTTCTTCGCCGAGGTACCATCGCCGGAGCATCGTCGAAGAACCTGATCGA
841 CACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * * * * *
19059796 CGACATTGGGATTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATATGCAATGGGTGCT
1 CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
19059861 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCTTAAAG
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCTTAAAG
*
19059926 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
130 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
19059991 TTCAAATGGTCACAAAATATTGTACGCTTCGAGTTTTTACCTGAATTATTTTGTGCATGCCAACA
195 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
19060056 AAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAAAT
260 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * ** * *
19060121 CCCGAACCGTAAAAATTTTTGAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTT
325 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
19060186 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
390 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
* *
19060251 AATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
455 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * **
19060316 CTGGTCGGCATAGT----GCCCG--C-CC-GCTCGTTTGGTCGGTTGGCTTAGGCATATAGAGTT
520 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * ** * * *
19060373 CATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGCGGTAGTGGGGTTGGCAGCACGTAGAGGG
585 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
*
19060438 GGACCCGAT-GAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGATTGAGCGCCCGCACGCTCG
650 GGACCCGATCG-ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
* *
19060502 TTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
714 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * ** * * * * *
19060567 TCTATGATCAGACCGAACCGAGGTTTGCGGCAGCACATGCTGGGCTGGGGCATTTGCTGGCGCCG
779 TCTAAGATCGGACAG-ACAAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
* ** * *
19060632 CATTTTTCTTCGTCGAGGTACCATCACCGGAGCATCGTCGGTGAACCTGATCGG
843 CATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * * *
19060686 CGACATTGGGATTCCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATATGCGATGGGTGCT
1 CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
19060751 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCTTAAAG
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCTTAAAG
* *
19060816 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGCGGACACTTTT
130 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
** *
19060881 TTCAAATCCTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
195 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
19060946 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAGAATTTTCAAAAAT
260 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
19061011 CCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAGATAGAAAACGAGTCGTCTTGCCATGAAACTT
325 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
19061076 CACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAA
390 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
* *
19061141 AATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCT
455 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
19061206 CTGGCCGGCGTAGTCCCCGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
520 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * **
19061271 CATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAGTAACAGGATTAGCAGCACGCAGAGGG
585 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * *
19061336 GGACTCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGTTCGT
650 GGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
** * *
19061401 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTAACAGTCTAAACATACAGAGTTCATTCCCAGT
715 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
** * * * * * *
19061466 CTAAGATCGGACCAGACCGAGGGTTGTGGTAGCACATGCTGGGCTTGGGCATTTGCTGGTACCCC
780 CTAAGATCGGA-CAGACAAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
** * * * *
19061531 ATTTTTCTTCACCGGGGCACCAGCGTCGCAGCATCGTCGGAGAACCTGACTGG
844 ATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* *
19061584 CGGCATTGGGGTTCCGACGATCGGTTGGGGTCGGGGGGGTGTGCGCACATGATGTGTGATGGGTG
1 CGGCATTGGGGTTCCGACGATCGG--GGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
19061649 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTA
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCC-TTA
* *
19061714 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGCGGACACT
127 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
** * *
19061779 TTTTTCAAATCCTCACAAAATTTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
192 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
19061844 ACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
257 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* *
19061909 AATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
322 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
19061974 CTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
387 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
19062039 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
452 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
19062104 TCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
517 TCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
19062169 CAGAGTTCATTCCCAATCTAAGAT-AGGTCCGGACCGAGGGTTGGGGCAGCAGGATCGGCAGCAC
578 CGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * * * *
19062233 GCAGAGGTGGACCCGCTCGATCCCTGGCTTACGCATACC-ACCCCTCTGGCCGGCTAAGCGCCCG
642 GCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGACTGAGCGCCCG
* ** *
19062297 CACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGAATACGGAGTTC
706 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
19062362 ATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
771 ATTCCCAGTCTAAGATCGGAC-AGACAAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * *
19062427 TGGTGCCATATTTTTCTTCGTCGAGGCACCATCGTC-TA--A-------A-AACCTGACCGA
835 TGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * ** * *
19062478 CGACATTGGGGTTTCGGTGATCGGGGGGGCCGAGGGGGTGTGCGCCCATGATGTGTGATGGGTGC
1 CGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
19062543 TGGTACTTGGCCCTTATA-TGGCCCGCTTTCCCCTCATCAAACCTCGAGAAGC-CACACCCCTT-
64 TGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAACCTCGAGAA-CTCAAACCCCTTA
* *
19062605 AA-AGCATTTGAGATTTTACAGG-TTGCTGCTAG-AGCCATTAAA-TGTCTGAAATGTGGACACT
127 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * * * * *
19062666 TTTCTC--ATGGTCACGAAATATTGTA-TCTT-AAG---TTAACTG-A-CTTTTT-AGCATG-CA
192 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * ******
19062720 AC-AGAAT-CAA-GATCACGT-TACAAAGTTTGGGGCCAAAAAT-CATCCGAGATGCCAATAAAA
257 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
*** ** * * *
19062780 AATATGGAACCG-----AGTTTTGAAAATAG-G--CAATAGAAAACGAGTCGTCTTGCC-TGACA
322 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
** *
19062836 C-T-ACGTGCTGGC-TAA-GGATCCATTG-ATGAATTTAC-AG-CAT----ATGGC-CTGGCACG
387 CTTCACGTGAAGGCTTAAGGGA-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * * * *
19062889 TAGAAATTTGAAGACTGTGCCTGAA-CGAGTCTTAGCCACGCAATCGAT--ACGGCTTG-GCATG
451 TAGAAATATGAAGA-TGTGCCTAAACCCA--CCTA-CCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * * *
19062950 CTGTCTCTCTAG-AGGCGTAGTGCCGGTACCCTCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGC
512 CCGTCTCTCTGGCCGGCGTAGTGCCCG--CCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGC
*
19063014 ATATGGAGTTCATT-CC---C--AG--C--A--AGA---A----T--GGCAGC---AT-------
575 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * *
19063048 A--TAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCACCC
640 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCC
* * * *
19063111 GCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGATTTCATTCCCAGTTTAAGCATACGGAGTT
705 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * * *
19063176 CATTCCCAATCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGTGCTTGTGCATGTG
770 CATTCCCAGTCTAAGATCGGA-CAGACAAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
19063241 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATAGGAGCAACGTCGGAGAACCTGACCGG
834 CTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * *
19063304 CGGCATTGAGGTTCTGGCGATCGGGGGGTCCGGGGGGTGCGTGCGCACATGATGTGCGATGGGTG
1 CGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGT--GTGCGCACATGATGTGCGATGGGTG
* * * *
19063369 CTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCACACCCCCTTA
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-AACCCCTTA
*
19063434 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACT
127 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
19063499 TTTATCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCA
192 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
19063564 ACAAAAATACAAGCATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
257 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
*** * *
19063629 AATTTTGGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
322 AA-TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* ** * *
19063694 ACTTCACATGAAGGCTTAAGTTACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACA
386 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
19063759 CAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
451 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
19063824 CTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCTGCTCGTTTCGTTGGTTGGCTTAGGCATAGGG
516 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * *
19063889 AGTTTATTCCCAGTCTAAGATTAGA-CTGGCCTGAGGGTTGTGGCAGCATGATCGGTAGCACGCA
581 AGTTCATTCCCAGTCTAAGATCAGACCAGACC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * * ** *
19063953 GAGGGGGACCTGACCGATTCCCGGCTTGCACATCCTGCCCCTCTGGCCGGTTGAGCACCCGCACG
645 GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACG
19064018 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G-------
710 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
19064072 --A--C------C-G--A-ACAAAGGGTTACGGCAGCACATGCTTGGCTTGGGCTTGTGCTGGTG
775 CCAGTCTAAGATCGGACAGACAAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
19064123 CCACATTTTTCTTCG-CCACGGAACCATCGCCAGAGCATCGTCGGAGAACCTGACCGG
840 CCACATTTTTCTTCGTCGA-GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * * *
19064180 CGGCATTGGGGTTCAAGA-AATCGGAGGGGCCGGGGCGGGTGTGCACACATGATGTGCGATGGCT
1 CGGCATTGGGGTTC-CGACGATCGG-GGGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGT
** * *
19064244 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAAATCGAGAGCTCACACCCCCCT
62 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-A-ACCCCT
* * *
19064309 TGAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACA
125 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* ** *
19064374 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAAATTGTATTTTTTTGTGCATG
190 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTTTTTGTGCATG
* * * *
19064439 CCAA-TAAAATACAAGGATCACATCTACCAATTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTA
254 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * *
19064503 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATATAAAACGAGTCGTCTTGCCATG
319 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19064568 -AACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
384 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19064632 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCATGCGCATCCC
449 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
19064697 GTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGC
514 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-T--GCTCGTTTCGTCGGTTGGCTTAGGC
** * * * * *
19064762 ATACGGAGTTCATTCCCAGTCTAAGATTGGATC-GAACCGAGGGCTGCAGCAGCAGGATTGACAG
575 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * ** * * *
19064826 CATGCAGAGGGGGACACGATCGATCCCCGGCTTGCGCAGCCCACCCTTCTGGTCGACTGAGCGAC
639 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCC
* * *
19064891 CGCACGCTCGTTTTGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAG-AT-C---G-
704 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
19064950 --A-----A--C-----T-GGAC---C-GAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTG
769 TCATTCCCAGTCTAAGATCGGACAGACAAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * *
19064996 CTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
834 CTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * *
19065059 CGGCATTGGGGTTCCGACGATCGGGGGCCCAGAGAGGGGTGTGCGCATAAGATGTGCGATGGGTG
1 CGGCATTGGGGTTCCGACGATCGGGGGGCC-G-G-GGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
19065124 CTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACATCACCTTA
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-AACCCCTTA
* *
19065189 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT-GGGACACT
127 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
19065253 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGAATGCCA
192 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
19065318 ACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAC-CCATTCTG-AAAAATTTTAAA
257 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAA
* * *
19065380 AAATCCCGAACCGTAAAAAGCTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
321 AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
19065445 ACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACATGCCATAAAAAAGGAATTGGCACG
386 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * *
19065510 CAGAAATATGAAGATGTGCCTAAACCCACCTACC-CTCTATTGATCCATGACTTGCGCATCCCGT
451 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * ** * *
19065574 CTCTTTGGGCGGCGTAGTGCCCGTCTGCCCGCCCACCCACTCATTTCGTCGGTTGGCTTAGGCGT
516 CTCTCTGGCCGGCGTAGTG-CC--C-GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
*
19065639 ACGGAGTTCATTTCCAGTCTAAG
577 ACGGAGTTCATTCCCAGTCTAAG
19065662 CATACGAAGT
Statistics
Matches: 8277, Mismatches: 860, Indels: 520
0.86 0.09 0.05
Matches are distributed among these distances:
814 2 0.00
815 196 0.02
816 2 0.00
817 1 0.00
818 1 0.00
824 2 0.00
825 13 0.00
826 31 0.00
827 67 0.01
828 15 0.00
829 3 0.00
830 20 0.00
831 8 0.00
832 10 0.00
833 24 0.00
835 17 0.00
836 5 0.00
837 2 0.00
840 5 0.00
841 1 0.00
842 7 0.00
843 6 0.00
844 102 0.01
845 88 0.01
846 336 0.04
847 14 0.00
848 65 0.01
849 14 0.00
850 15 0.00
851 35 0.00
852 23 0.00
853 4 0.00
854 13 0.00
855 12 0.00
856 4 0.00
857 3 0.00
858 38 0.00
859 15 0.00
860 10 0.00
861 9 0.00
862 15 0.00
863 35 0.00
864 2 0.00
865 8 0.00
866 222 0.03
867 13 0.00
868 5 0.00
869 176 0.02
870 101 0.01
871 35 0.00
872 20 0.00
873 15 0.00
874 3 0.00
875 316 0.04
876 371 0.04
877 285 0.03
878 102 0.01
879 370 0.04
880 15 0.00
881 4 0.00
882 154 0.02
883 285 0.03
884 13 0.00
885 18 0.00
886 1 0.00
887 53 0.01
888 296 0.04
889 24 0.00
890 1477 0.18
891 176 0.02
892 126 0.02
893 119 0.01
894 34 0.00
895 5 0.00
896 627 0.08
897 247 0.03
898 385 0.05
899 8 0.00
900 91 0.01
901 393 0.05
902 102 0.01
904 3 0.00
905 287 0.03
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
GACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCGGACAGACAAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
TTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
Found at i:19059659 original size:26 final size:26
Alignment explanation
Indices: 19059630--19059680 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19059620 GTTGACTTAG
19059630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19059656 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
19059681 TGATCAGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19060549 original size:26 final size:26
Alignment explanation
Indices: 19060520--19060570 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19060510 GTTGACTTAG
*
19060520 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19060546 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
19060571 TGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19061455 original size:26 final size:26
Alignment explanation
Indices: 19061419--19061469 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19061409 TTGACTTAGG
*
19061419 CATACGGAGTTCATTAACAGTCTAAA
1 CATACAGAGTTCATTAACAGTCTAAA
**
19061445 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTAACAGTCTAA
19061470 GATCGGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTAACAGTCTAAA
Done.