Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 108 of 195
Found at i:19063190 original size:26 final size:26
Alignment explanation
Indices: 19063138--19063190 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19063128 GTTGACTTAG
* * *
19063138 GCATACGGATTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19063164 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19063190 G
1 G
19063191 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19065674 original size:26 final size:26
Alignment explanation
Indices: 19065638--19065687 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
19065628 GGCTTAGGCG
*
19065638 TACGGAGTTCATT-TCCAGTCTAAGCA
1 TACGAAGTTCATTGT-CAGTCTAAGCA
19065664 TACGAAGTTCATTGTCAGTCTAAG
1 TACGAAGTTCATTGTCAGTCTAAG
19065688 ATTGGACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTGTCAGTCTAAGCA
Found at i:19066285 original size:742 final size:743
Alignment explanation
Indices: 19064916--19066404 Score: 2260
Period size: 742 Copynumber: 2.0 Consensus size: 743
19064906 TGGGTTGACT
** *
19064916 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTAGCACATGCT
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCT
* * *
19064981 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGG
66 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGCCGG
*
19065046 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCAGAGAGGGGTGTGCGCATAAGA
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCAGAGAGGGGTGTGCGCACAAGA
* *
19065111 TGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAAC
196 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCCAGAAC
* *
19065176 TCACATCACCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG
261 TCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG
*
19065241 AAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
326 AAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTT
* *
19065306 TTATGAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACCCATTCTGAAA
391 TTATGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACCCATTCCGAAA
*
19065371 AATTTTAAAAAATCCCGAACCGTAAAAAGCTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
456 AATTTTAAAAAATCCCGAACCGAAAAAAGCTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19065436 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACATGCCATAAAAAAGGA
521 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGA
* * * *
19065501 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-CTCTATTGATCCATGACTTGC
586 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGACTTGC
* * * *
19065565 GCATCCCGTCTCTTTGGGCGGCGTAGTGCCCGTCTGCCCGCCCACCCACTCATTTCGTCGGTTGG
651 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCCCACCCACTCATTTCGTCGGTTGG
*
19065630 CTTAGGCGTACGGAGTTCATTTCC-AGTC
716 CTTAGGCATACGGAGTTCA-TTCCTAGTC
** * * *
19065658 TAAGCATAC-GAAGTTCATTGTCAGTCTAAGATTGGACCAGACGGAGGGTT-CTGGCAGCACATG
1 TAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGC-GGCAGCACATG
* ** *
19065721 CTGGGCTC-AGGCATGTGTTGGTGCCGTATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGT
64 CTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGC
* * * * *
19065785 CGGAGAACCTGACCGGTGGCATTGGGGTTTCGGCGATCGGGGGGCC-G-G-GGGGTGTGTGCACA
128 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCAGAGAGGGGTGTGCGCACA
* * *
19065847 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCCAG
193 AGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCCAG
* *
19065912 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
258 AACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
*
19065977 CT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
323 CTGA-AAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
19066041 CTTTTTTGTGCATGCCAAAAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCGAAAACTCC-T
386 CTTTTTTATGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAC-CCAT
* * * *
19066105 TCCGAAAAAATTTTAAAATATCTCGAACTGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
449 TCCG-AAAAATTTTAAAAAATCCCGAACCGAAAAAAGCTTCAAAAATCATGAAAAATAGAAAACG
19066170 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
513 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
19066235 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCA
578 AAAAAGGAATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCA
* * * * * *
19066300 CGGCTTGCGCATCTCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTCG
643 CGACTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCCCACCCACTCATTTCG
*
19066365 TCGGTTGGTTTAGGCATACGGAGTTCATTCCTAGTC
708 TCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
19066401 TAAG
1 TAAG
19066405 ATTGGACTGG
Statistics
Matches: 674, Mismatches: 63, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
738 1 0.00
739 138 0.20
740 100 0.15
741 17 0.03
742 320 0.47
743 98 0.15
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (743 bp):
TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGCCGG
AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCAGAGAGGGGTGTGCGCACAAGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCCAGAAC
TCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG
AAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTT
TTATGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACCCATTCCGAAA
AATTTTAAAAAATCCCGAACCGAAAAAAGCTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGA
ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGACTTGC
GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCCCACCCACTCATTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCTAGTC
Found at i:19066573 original size:26 final size:26
Alignment explanation
Indices: 19066537--19066589 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19066527 GTTGAGTTAG
*
19066537 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGCCTAA
*
19066563 GCATATGGAGTTCATTGCCAGCCTAA
1 GCATATGGAGTTCATTCCCAGCCTAA
19066589 G
1 G
19066590 TTTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGCCTAA
Found at i:19068691 original size:26 final size:26
Alignment explanation
Indices: 19068651--19068700 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19068641 GTTGACTTAG
19068651 GCATACGGAGCTCATTCCCAGTCTCA
1 GCATACGGAGCTCATTCCCAGTCTCA
*
19068677 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGCTCATTCCCAGTCT
19068701 AGATCGGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTCA
Found at i:19072205 original size:26 final size:26
Alignment explanation
Indices: 19072176--19072226 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19072166 GTTGACTTAG
19072176 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19072202 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
19072227 TGATCAGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19073663 original size:892 final size:892
Alignment explanation
Indices: 19068319--19078239 Score: 11574
Period size: 900 Copynumber: 11.2 Consensus size: 892
19068309 NNNNNNNNNN
*
19068319 CTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* * *
19068384 TGCGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
66 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* *
19068449 TAGT----GCCCGCCCGCCCGCCCGCTCGTTTCCTCGATTGGGTTAGGCATACGGAGTTCATTCC
131 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
19068510 CAGTCTAAGAT-TGAACCGAACCGAGGGTTACGGCAGCAAGATCGGCAGCACATAGAGCGGGACT
196 CAGTCTAAGATCAG-ACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC
* * * * ** * *
19068574 CGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTGGTCGGTTGAGCGCCTGCTCGCTCGTTTCGT
260 CGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
* * *
19068639 GGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTCAGCATACGGAGTTCATTCCCAGTCTAGA
325 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAG-TC--T---A----AGA
*** * * * * **
19068704 TCGGATTGGGCTGAAGGTTTCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
380 TCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTT
* * * * *
19068769 CTTCATCGAGGCA--A----C----CATCGCCGGAGAACCTGACCGGCGGCATT-GGGTTTCGAC
445 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
19068823 GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTTGCGATGGGTGCTGGTACTTGGCCCTTAT
510 GATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG-TGCGATGGGTGCTGGTACTTGGCCCTTAT
*
19068888 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTT
573 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
19068953 ACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGACACAA
638 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
19069017 AATCTTGTACACTTCGAGTTTTTACCTGAA-TTTTTT-TGCATGCCAATAAAAATACAAGGATCA
703 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCA
* * ** *
19069080 CGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACTGCAAAAA
768 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
* * *
19069145 GTTTCAAAAATCGTG----A-A-AAAATGAGTCATCTTACCATGAAACTTCACGTGAAGG
833 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
19069199 CTTAAGGGACCATTGT-TGAATTAACAAGCCAT-AAAATGGGCATTTGCACGTAGAAATATGAAG
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GGCATTGGCACGTAGAAATATGAAG
* * *
19069262 ATGTGGCCTTAAACCCACCTACCATTCC-ATCGATTCCACGACTTGCGCATTCCCGTTTCTCTGG
65 ATGT-GCC-TAAACCCACCTACCA-CCCTATCGA-TCCACGGCTTGCGCA-TCCCGTCTCTCTGG
* * * *
19069326 CCAGCGTAGTGCCCGCGCCGCCCACCCGCGCTGCTCGGTTTCCATC-AGTTGGCTTAGGCATACG
125 CCGGCGTAGTGCCCGC-CCGCCCGCCCGC-CCGCTC-GTTT-CGTCGA-TTGGCTTAGGCATACG
* ** * * *
19069390 GATGTTCATTCCCAGTCTAAGATCAAGACCAGAACTGAGGGTTATGGCAGCAAGATCAGTAGCAT
185 GA-GTTCATTCCCAGTCTAAGATC-AGACC-GAACCGAGGGTTGCGGCAGCAGGATCGGCAGCA-
** * * *
19069455 GCGGTAG-GGGTTACCCGGTCGATCCC-GACTTGCGCATCCTGCCCGGTC-GGCCGACTGAGCG-
246 -C-GTAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCC-CTCTGGCCGACTGAGCGC
* * *
19069516 CCGCACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCTCAGTCTAAGCATACAAGT
308 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT---A--
* ** * * * * * *
19069581 TCATTTCGAGTCTAAGATCGGATCAGACAAAGGGTTACGGCACCACATACT-AGTTTCGGCATGT
368 -CA----GAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGT
* * * * ** *
19069645 GCTGGTGCCACA-TTTTCTTTGTC-GAGCACCACCGTCGAAGCATCACCGGAGAACCTGACTGAC
428 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAC
19069708 GGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATG-GCGATGGGTGCTG
493 GGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-
* * *** *
19069771 GGTACTTGGCCCTTATATTGGCCCCTTATCCTTCATCAAACCTCGAGAACTCA-AATGCCTTATA
557 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
19069835 GAGTATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAAT-GGGACACTTT
622 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
19069899 TTTCGAATGGTCACAAAAAT-TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
687 TTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
* * * * * * *
19069963 -TAAAATAGAAGGATCACATCTACCAAGTTTGCGGCCAAAAATCCTTCTGAAAAAATTTTGAAAA
751 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
19070027 ATCCCGAATCACAAAAAGTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTTTGCCATGAAA
816 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAA
19070091 CTTCACGTGAAGG
880 CTTCACGTGAAGG
* *
19070104 CTTAAGGGGACCATTGTATGGAATTTACAAGCCAT-AAAATGGCATTTGCACATAGAAATATGAA
1 CTTAA-GGGACCATTGTAT-GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
* * * *
19070168 GATGTGCCTAAACCCACCTACCATTCC-ATCGATCCACGACTTGCGCATCCCGTTTCTCTGGCCA
64 GATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
19070232 GCGTAGTGCCCGCCCGCCCACCCGCCTGCTCGTTTCATC-AGTTGGCTTAGGCATACGGAGTTCA
128 GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCA
* * * * * * *
19070296 TTCCCAGTCTAAGATCAGACC-AGACTGAGGGTTACGGCAGCAAGATCGGTAGCATGTGGTGGGG
192 TTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGG
* * * * * * *
19070360 TACCCGATCGATCCCCGACTTGCGCGTCCTGCCCC-CTCGGCCGACTGAGCGCCCGCACGGTCGT
256 GACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCT-GGCCGACTGAGCGCCCGCACGCTCGT
* * *
19070424 TTCATGGGTTGACTTAGGCATATGGAGTTCATTCTCAGTCTAAGCATACAAAGTTCATTTTGAGT
320 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT----A---CA----GAGT
* ** * * * * *
19070489 CTAAGATCGGATCAGACAAAGGGTTACGGCACCACCATACTAGGCTCGGGCATGTGCTGGTGCCA
374 CTAAGATCGGACCAGACTGAGGGTTGCGGCAGCA-CATGCTGGGCTTGGGCATGTGCTGGTGCCA
* * * *
19070554 CATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGT-GAGAAAACCTGACCGGCGGCATTGGG
438 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCG-GAGAACCTGACCGACGGCATTGGG
* * *
19070618 GTTCCAATGATCAGGGGGCC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
502 GTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
19070681 CCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGTATTTGA
567 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
19070746 CATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
632 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
19070811 TCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
697 TCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
* *
19070876 AGGATCACGTCTACCATGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
761 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* * * * * *
19070940 GTAAAAAGTTTAAAAAATCAT-AAAAATTA-AGAAACGAGTCATCTAGCCATGAAACTTTACGTG
826 GCAAAAAGTTTCAAAAATCGTGAAAAA-TAGA-AAACGAGTCGTCTTGCCATGAAACTTCACGTG
19071003 AAGG
889 AAGG
* * * * *
19071007 CTTAAGGGACCATTGTATGCATTTGCAAGCCATAAAAATGGCATTGGCACCTAAAAATATGAATA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* * * *
19071072 TGTGCCTAAA--C-CC-A--ACGCT-T---T------C---CGCATCTCGTCTCTTTGGCCAGCG
66 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
*
19071118 TAGT------------GCCCGCCCGCTCGTTTCGTC-AGTTGGCTTA-GCATACGGAGATCATTC
131 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTC
* * * ** * *
19071169 CAAGTTTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAAGGGGAGC
195 CCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC
* *
19071234 CGGCCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTTC-TTTCG
260 CGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGC-TCGTTTCG
*
19071298 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG-AT-CAGA--C------CGGA-C--
324 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTCTAAGATCGGACCAG
* * * * * *
19071350 -C-GAGTGTTGCGACATCACATGCTGGGTTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAG
389 ACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
* * * * * *
19071413 GGCACCATCGTCGGTGCATCGTCGGGGAGCCTGACC-AGTGGAATTAGGGTTCCGACGATCGGGG
454 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGG
*
19071477 GGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
517 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
19071542 CTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTG
582 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
19071607 CCGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAA
647 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
19071672 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCCTGCCAAGAAAAATACAAGGATCACGTCTACCA
712 CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
19071737 AGTTTGGGGCCAAAACTCTTTCCGAAAGAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAA
777 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
19071802 ATCGTGAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
842 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
19071852 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* * * *
19071917 TGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCA
66 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * **
19071982 TAGT------------GCCCGCCCGCTCGTTTGGTCGGTTGGCTTAGGCATATAGAGTTCATTCC
131 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * * ** * *
19072035 CAATCTAAGATCGGACC-AGACCAAGGGTTGCGGTAGTGGGGTTGGCAGCACGTAGAGGGGGACC
196 CAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC
* * * * *
19072099 CGAT-GAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGATTGAGCGCCCGCACGCTCGTTCCG
260 CGGTCG-ATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCG
*
19072163 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAT
324 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC--AG---------AGTCTAA
* * * * * * *
19072228 GATCAGACCAAACTGAGGGTTGCGGCAGCACATGCTGGGCTGGGGCATTTGCTGGCGTCGCATTT
378 GATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTT
* * * * * * * *
19072293 TTCTTCGCCGAGGTACCATCGCCGGAGCATCGTCGAAGAACCTGATCGACGACATTGGGATTCCG
443 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * *
19072358 GCGATCGAGGGGGCC-GGGGGGTGTGCACACATGATATGCAATGGGTGCTGGTACTTGGCCCTTA
508 ACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
19072422 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTT
572 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
19072487 TACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
637 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * * *
19072552 AAATATTGTACGCTTCGAGTTTTTACCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATC
702 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATC
* * * * *
19072617 ACCTCTACAAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
767 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* ** * *
19072682 ATTTTTGAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGG
832 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
19072743 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* * * * * *
19072808 TGTGCCTAAACGCAGCTACCACCCTATCGATCCACCGCTTGCGCATCCTGTCTCTATGGCTGGCG
66 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
** * * * * *
19072873 TAGTGCTTGCCCGTCCGCCTGCCCGTTCATTTTGTC-ATTGGGCTTAGGCATACGGAGTTCATTC
131 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATT-GGCTTAGGCATACGGAGTTCATTC
*** * * * *
19072937 CCAGTCTAAGATCAGACCGAAAAAAGGGTTGCGGTAGCAGGATCAGTAGCACGTAGAGGGGGACT
195 CCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC
* * * * *
19073002 CGGTTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCTCGCACGCTTGTTTCGT
260 CGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
* * * *
19073067 GGATTGACTTACGTATACGGAGTTCATTCCCAGTCTAAGCATACAGAGT-TAAGATCGGACCGGA
325 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTCTAAGATCGGACCAGA
* * * * *
19073131 CTGAGGGTTGCGGCAGTACATGCTGTGCTTGGGCATGTGCTGGTACCATATTTTTCTTCGTTGGG
390 CTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
* * * *
19073196 GCACCATCATAGGAGCAACGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGG
455 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGG
* *
19073261 GCCGGGGGGTGTGTGCGCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCT
519 GCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
19073326 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAC
583 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
19073391 TGCCAGTAG-CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
648 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
** * *
19073455 ACTTTAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
713 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * *
19073520 GTTTGGGGCCAAAAATCCTTTCGAAAGAATTTTCAAAAATCCCGAACCGCAAAAAGTTTTAAAAA
778 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
*
19073585 TCGTGAAAGATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
843 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * *
19073635 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGTAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
*
19073700 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCG
66 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
*
19073765 TAGT---C-CCCGCCCGCCCGCCTGCTCGTTTCGTC-AGTTGGCTTAGGCATACGGAGTTCATTC
131 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTC
* * * * * ** * *
19073825 CCAGTCTAAGATCAGACCGGACAGAGGGTTGCAGTAACAGGATTAGCAGCACGCAGAGGGGGACT
195 CCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC
** * * *
19073890 CGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGTTCGTTTCGT
260 CGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
** *
19073955 GGGTTGACTTAGGCATACGGAGTTCATTAACAGTCTAAACATACAGAGTTCATTCCCAGTCTAAG
325 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC--AG---------AGTCTAAG
* * * * * *
19074020 ATCGGACCAGACCGAGGGTTGTGGTAGCACATGCTGGGCTTGGGCATTTGCTGGTACCCCATTTT
379 ATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTT
** * * * *
19074085 TCTTCACCGGGGCACCAGCGTCGCAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGA
444 TCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* *
19074150 CGATCGGTTGGGGTCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTA
509 CGATCGG--GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
19074215 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTT
572 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * **
19074280 TACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATCCTCACA
637 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
19074345 AAATTTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAATTACAAGGATC
702 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATC
* *
19074409 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAA
767 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
*
19074474 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGG
832 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
19074535 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
*
19074600 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCA
66 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
19074665 TAGT--------GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
131 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * *
19074722 CAATCTAAGAT-AGGTCTGGACCGAGGGTTGGGGCAGCAGGATCGGCAGCACGCAGAGGTGGACC
196 CAGTCTAAGATCA-GACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC
* * * * *
19074786 CGCTCGATCCCTGGCTTACGCATACCGCCCCTCTGGCC-AGCTAAGCGCCCGCACGCTCGTTTCA
260 CGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCG
** *
19074850 TGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAA
324 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC--AG---------AGTCTAA
* * ** * * *
19074915 GATCAGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTT
378 GATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTT
* * * *
19074980 TTCTTCGTCGGGGCACCATCGTC-TA--A-------A-AACCTGACCGACGACATTGAGGTTTCG
443 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCG
** * *
19075034 GTGATCGGGGGGGCCGAGGGGGGTGTGCGCCCATGATGTGTGATGGGTGCTGGTACTTGGCCCTT
508 ACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
19075099 ATATTGGCCCGCTTTCCCTCATCAAACCTCGAGAAGC-CACACCCCCTTAAAGAGCATTTGAGAT
571 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-CTCACACCCCCTTAAAGAGCATTTGAGAT
* *
19075163 TTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCA
635 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * * **
19075228 CGAAATATTGTACACTTCAAGTTTTTACCTGAA-CGTTTTATGCATGCCAACAAAAATACAAGGA
700 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGA
* * * ***
19075292 TCACGTCTACAAAGTTTGGGGCCAAAACTCATTCCGAGAAAATTTTAAAAAATATGGAACCGCAA
765 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAA
** * *
19075357 AAAGTTTTGAAAATAGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
830 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
19075420 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* * * * **
19075485 TGTGCCTAAACGCACTTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTAGTAGGCG
66 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * * *
19075550 TAGTGCCCGCCCACCCTCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATT-C
131 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
19075614 C---C--AG--CA-A--G-A---A----T--GGCAGC---AT-------A--TAGAGGGGGACCC
196 CAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC
* * * *
19075647 GGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCACCCGCAAGCTCGTTTCATG
261 GGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
* * *
19075712 GGTTGACTTAGGCATACGGATTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAATCTAAGA
326 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC--AG---------AGTCTAAGA
* *
19075777 TCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGTGCTTGTGCATGTGCTGGTGCCACATTTTT
380 TCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTT
* * * * * * *
19075842 CTTCGTCGGGGCACCATCATAGGAGCAACGTCGGAGAACCTGACCGGCGGCATTGAGGTTCTGGC
445 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * *
19075907 GATC-----G--GGGGGTGCGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATAT
510 GATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
19075965 TGGCCCCCTATCCCTCATCAAATCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
575 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
19076030 AGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACAAAA
640 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
19076095 TCTTGTACAGTTCGAGTTTTTAGGTGAATTTTTTTATGCATGCCAAAAAAAATACAAGCATCATG
705 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACG
* * * *** *
19076160 TCTACCAAGTTTGGGGCCAAAAGTCCTTCCAAAAAAATTTTAAAAATTTTGGAACCACAAAAAGT
770 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
* *
19076225 TTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
835 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*** * *
19076283 CTTAAATTACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACATAGAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* * *
19076348 TGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCA
66 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * * *
19076413 TAGT----GCCCGCCCGCCCGTCTGCTCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTTATTCC
131 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * *
19076474 CAGTCTAAGATTAGACTG-GCCTGAGGGTTGTGGCAGCATGATCGGTAGCACGCAGAGGGGGACC
196 CAGTCTAAGATCAGACCGAACC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC
* ** * ** *
19076538 TGACCGATTCCC-GGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCG
260 CGGTCGA-TCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCG
* * *
19076602 TGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G-----GA-CCGAACA-
324 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTCTAAGATCGGACCAG
* * * * **
19076655 A---AGGGTTACGGCAGCACATGCTTGGCTTGGGCTTGTGCTGGTGCCACATTTTTCTTCGCCAC
389 ACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
* * * * *
19076717 GGAACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCAAGA-AATCGGAG
454 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC-CGACGATCGG-G
* *
19076781 GGGCCGGGGCGGGTGTGCACACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCC
517 GGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* ** * * * *
19076846 CCTATTCCTCATCAAAAATCAAGAGCTCACACCCCCTTGAAGAGCATTTTAGATTTTACAGGTTT
581 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
19076911 GCTGCCAGTAACCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
646 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* ** * * * *
19076976 ACACTTCAAGTTTTTAATTGTATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTACC
711 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
19077041 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
776 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* *
19077106 AATCGTGAAAAATATAAAACGAGTCGTCTTGCCATG-AACATCACGTGAAGG
841 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
19077157 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* * * *
19077222 TGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCATGCGTATCCCGTCTCTCTGGTCGGCG
66 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* *
19077287 TAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
131 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
** * * * * * * * *
19077352 CAGTCTAAGATTGGATCGAACCGAGGGCTGCAGCAGCAGGATTGACAGCATGCAGAGGGGGACAC
196 CAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC
* * * * * * *
19077417 GATCGATCCCCGGCTTGCGCAGCCCACCCTTCTGGCCGACTGAGCGACCGCACGCTCGTTTTGTG
261 GGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
* * *
19077482 GGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAG-AT-C---G---AA-CT-GGA-C---C
326 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTCTAAGATCGGACCAGAC
* * * *
19077533 -GAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
391 TGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* * *
19077597 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCC
456 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
* * * * *
19077662 CAGAGAGGGGTGTGCGCATAAGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCGCCCT
521 C-G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
19077727 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
584 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
19077792 GCCAATAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
649 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
19077857 CTTCGAGTTTTTAGCTGAATTTTTTTATGAATGCCAACAAAAATACAAGGATCACGTCTACCAAG
714 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
19077922 TTTGGGGCCAAAAC-CCATTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGCTTCAAAAA
779 TTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
*
19077986 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
843 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * *
19078036 CTTAAGGGACCATTGTTTGAATTTACATGCCATAAAAAAGGAATTGGCACGCAGAAATATGAAGA
1 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* * * * * *
19078101 TGTGCCTAAACCCACCTACCACTCTATTGATCCATGACTTGCGCATCCCGTCTCTTTGGGCGGCG
66 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * * * * *
19078166 TAGTGCCCGTCTGCCCGCCCACCCACTCATTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTTC
131 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
19078231 CAGTCTAAG
196 CAGTCTAAG
19078240 CATACGAAGT
Statistics
Matches: 7870, Mismatches: 903, Indels: 537
0.85 0.10 0.06
Matches are distributed among these distances:
843 85 0.01
844 19 0.00
845 178 0.02
846 228 0.03
847 6 0.00
848 3 0.00
849 5 0.00
851 4 0.00
852 1 0.00
855 2 0.00
857 2 0.00
859 46 0.01
860 203 0.03
861 6 0.00
862 191 0.02
863 265 0.03
864 54 0.01
865 157 0.02
866 102 0.01
867 3 0.00
868 1 0.00
869 7 0.00
870 158 0.02
871 62 0.01
872 7 0.00
874 142 0.02
875 313 0.04
877 13 0.00
878 620 0.08
879 242 0.03
880 26 0.00
881 21 0.00
882 16 0.00
883 48 0.01
884 6 0.00
885 490 0.06
886 9 0.00
887 5 0.00
888 209 0.03
889 8 0.00
890 318 0.04
891 404 0.05
892 476 0.06
893 197 0.03
894 127 0.02
895 60 0.01
896 391 0.05
897 65 0.01
898 145 0.02
899 188 0.02
900 636 0.08
901 260 0.03
902 107 0.01
903 341 0.04
904 78 0.01
905 52 0.01
906 14 0.00
907 29 0.00
908 19 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC
GGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTCTAAGATCGGACCAGAC
TGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
Found at i:19074004 original size:26 final size:26
Alignment explanation
Indices: 19073968--19074018 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19073958 TTGACTTAGG
*
19073968 CATACGGAGTTCATTAACAGTCTAAA
1 CATACAGAGTTCATTAACAGTCTAAA
**
19073994 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTAACAGTCTAA
19074019 GATCGGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTAACAGTCTAAA
Found at i:19074382 original size:900 final size:899
Alignment explanation
Indices: 19071311--19078239 Score: 8780
Period size: 878 Copynumber: 7.8 Consensus size: 899
19071301 GTTGACTTAG
* * * * * *
19071311 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGTGTTGCGACATCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19071376 TTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATCGTCGGTGCATCGTCGGGGA
66 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
19071441 GCCTGACC-AGTGGAATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGT
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
19071505 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19071570 CACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19071635 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * * *
19071700 GTGCCTGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAG
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
19071765 AATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAG-AAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
19071829 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
19071894 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19071959 GCATCCCGTCTCTCTGGTCGGCATAGT----GCCCG--C-CC-GCTCGTTTGGTCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTA
** * * * ** *
19072016 GGCATATAGAGTTCATTCCCAATCTAAGATCGGACCAGACCA-AGGGTTGCGGTAGTGGGGTTGG
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTGCGGTAGCAGGATTGG
* * * * **
19072080 CAGCACGTAGAGGGGGACCCGA-TGAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGATTGAG
778 CAGCACGCAGAGGGGGACCCGACCG-ATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
19072144 CGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19072202 GCATACGGAGTTCATTCCCAGTCTATGATCAGACCAAACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
19072267 CTGGGGCATTTGCTGGCGTCGCATTTTTCTTCGCCGAGGTACCATCGCCGGAGCATCGTCGAAGA
66 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
19072332 ACCTGATCGACGACATTGGGATTCCGGCGATCGAGGGGGCC-GGGGGGTGTGCACACATGATATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
19072396 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19072461 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
19072526 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACGCTTCGAGTTTTTACCTGAATTATTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* * * *
19072591 TGCATGCCAACAAAAATACAAGGATCACCTCTACAAAGTTTGGGGCCAAAACTCATTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** *
19072656 ATTTTAAAAAATCCCGAACCGTAAAAATTTTTGAAAATAGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19072721 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19072786 TTGGCACGTAGAAATATGAAGATGTGCCTAAACGCAGCTACCACCCTATCGATCCACCGCTTGCG
585 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * * * *
19072851 CATCCTGTCTCTATGGCTGGCGTAGTGCTTGCCCGTCCGCCTGCCCGTTCATTTTGTC-ATTGGG
650 CATCCCGTCTCTCTGGCCGGCGTAGT-C---CCCGCCCGCCCGCCTGCTCGTTTCGTCGGTT-GG
* * *
19072915 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAAAAAGGGTTGCGGTAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGAT
** * * * *** *
19072980 CAGTAGCACGTAGAGGGGGACTCGGTTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGTCGGCTG
775 TGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
19073045 AGCGCTCGCACGCTTGTTTCGTGGATTGACTTACGTATACGGAGTTCATTCCCAGTCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19073105 GCATAC--AG---------AGT-TAAGATCGGACCGGACTGAGGGTTGCGGCAGTACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * *
19073158 CTTGGGCATGTGCTGGTACCATATTTTTCTTCGTTGGGGCACCATCATAGGAGCAACGCCGGAGA
66 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
19073223 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGTGCGCAGATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG-GTGTGCGCACATGATGT
* *
19073288 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19073353 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAG-CATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19073417 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * * *
19073482 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAG
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
19073547 AATTTTCAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAGATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19073612 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19073677 ATTGGCATGTAAAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
19073742 GTATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTA
* * *
19073807 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAGTAACAGGATTAGC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGATTGGC
*
19073872 AGCACGCAGAGGGGGACTCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
779 AGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * **
19073937 CCTGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTAACAGTCTAA
844 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19073993 ACATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19074058 CTTGGGCATTTGCTGGTACCCCATTTTTCTTCACCGGGGCACCAGCGTCGCAGCATCGTCGGAGA
66 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
19074123 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGGTTGGGGTCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG--GGGGCCGGGGGGGTGTGCGCACATGATGT
* *
19074188 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19074253 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** *
19074318 TGCGGACACTTTTTTCAAATCCTCACAAAATTTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
*
19074382 GTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
19074447 AATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19074512 TGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19074577 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
19074642 GCATCCCGTCTCTCTGGCCGGCATAGT----GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
19074703 GGCATACAGAGTTCATTCCCAATCTAAGAT-AGGTCTGGACCGAGGGTTGGGGCAGCAGGATCGG
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACAGAGGGTTGCGGTAGCAGGATTGG
* * * * *
19074767 CAGCACGCAGAGGTGGACCCG-CTCGATCCCTGGCTTACGCATACCGCCCCTCTGGCCAGCTAAG
778 CAGCACGCAGAGGGGGACCCGAC-CGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* **
19074831 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19074889 GAATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19074954 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTC-TA--A-------A-A
66 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * ** *
19075008 ACCTGACCGACGACATTGAGGTTTCGGTGATCGGGGGGGCCGAGGGGGGTGTGCGCCCATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* * *
19075073 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTTTCCCTCATCAAACCTCGAGAAGC-C
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-CTC
*
19075137 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * **
19075202 ATGGGGACACTTTTCTCAAATGGTCACGAAATATTGTACACTTCAAGTTTTTACCTGAA-CGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* * * *
19075266 TATGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCATTCCGAGA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*** ** * *
19075331 AAATTTTAAAAAATATGGAACCGCAAAAAGTTTTGAAAATAGTTAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
19075396 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19075461 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACGCACTTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * * *
19075526 CGCATCCTGTCTCTCTAGTAGGCGTAGTGCCCGCCCACCCTCTCGCCCGCTCATTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTCCCCG-CC-CGC-C-CGCCTGCTCGTTTCGTCGGTTG
*
19075591 GCTTAGGCATATGGAGTTCATT-CC---C--AG--CA-A---G--A-A----T---G--GC---A
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGA
* * ** * *
19075629 ---GCA-TA--TAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTAGCCGACT
774 TTGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
19075688 GAGCACCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGATTTCATTCCCAGTTTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19075749 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19075814 CTTGTGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATAGGAGCAACGTCGGAGA
66 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
19075879 ACCTGACCGGCGGCATTGAGGTTCTGGCGATC-----G--GGGGGTGCGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
19075937 GATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19076002 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
19076067 GGGACACTTTTATCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGGTGAATTTTTTTAT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* * * * *
19076132 GCATGCCAAAAAAAATACAAGCATCATGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *** * *
19076197 TTTTAAAAATTTTGGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *** *
19076262 CCATGAAACTTCACATGAAGGCTTAAATTACCATTGTATGAATTTACAAGCCATAAAAATGGTAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19076327 TGGCACATAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
19076392 ATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCCCGTCTGCTCGTTTCGTTGGTTGGCTTAGG
651 ATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * * * * *
19076457 CATAGGGAGTTTATTCCCAGTCTAAGATTAGACTGGCCTGAGGGTTGTGGCAGCATGATCGGTAG
716 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGATTGGCAG
* * * *
19076522 CACGCAGAGGGGGACCTGACCGATTCCC-GGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCAC
781 CACGCAGAGGGGGACCCGACCGA-TCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
19076586 CCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19076641 G-AT-C-G-G---A----C---C---GA----A-CA-A---AGGGTTACGGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
19076680 CTTGGGCTTGTGCTGGTGCCACATTTTTCTTCGCCACGGAACCATCGCCAGAGCATCGTCGGAGA
66 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
19076745 ACCTGACCGACGGCATTGGGGTTCAAGA-AATCGGAGGGGCCGGGGCGGGTGTGCACACATGATG
131 ACCTGACCGACGGCATTGGGGTTC-CGACGATCGG-GGGGCCGGGG-GGGTGTGCGCACATGATG
* * ** * *
19076809 TGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAAAATCAAGAGCTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
19076874 ACACCCCCTTGAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** *
19076939 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAATTGTATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* *
19077004 TGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
19077069 AAGTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
19077134 TTGCCATG-AACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19077198 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCATG
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19077263 CGTATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCG-CC-T--GCTCGTTTCGTCGGTTG
** * * * * * *
19077328 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACCGAGGGCTGCAGCAGCAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGA
* * * * * * * * *
19077393 TTGACAGCATGCAGAGGGGGACACGATCGATCCCCGGCTTGCGCAGCCCACCCTTCTGGCCGACT
774 TTGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
19077458 GAGCGACCGCACGCTCGTTTTGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19077519 G-AT-C---G---A-----A--C-----T--G----GACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
19077558 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
19077623 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCAGAGAGGGGTGTGCGCATAAGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-G-GGGGGGTGTGCGCACATGATGT
* *
19077688 GCGATGGGTGCTGGTATTTGGCCCTTATATTGGCGCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19077753 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTATGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19077818 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * *
19077883 ATGAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCATTCTGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAA
* * *
19077947 AAATTTTAAAAAATCCCGAACCGTAAAAAGCTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
19078012 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACATGCCATAAAAAAGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
19078077 AATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATTGATCCATGACTTG
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** *
19078142 CGCATCCCGTCTCTTTGGGCGGCGTAGTGCCCGTCTGCCCGCCCACCCACTCATTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGT-CCC--C-GCCCGCCCGCCTGCTCGTTTCGTCGGTTG
* *
19078207 GCTTAGGCGTACGGAGTTCATTTCCAGTCTAAG
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19078240 CATACGAAGT
Statistics
Matches: 5282, Mismatches: 626, Indels: 272
0.85 0.10 0.04
Matches are distributed among these distances:
859 38 0.01
860 203 0.04
861 4 0.00
862 193 0.04
863 273 0.05
865 3 0.00
866 101 0.02
867 2 0.00
868 1 0.00
869 3 0.00
870 3 0.00
871 31 0.01
872 1 0.00
874 155 0.03
875 317 0.06
876 1 0.00
877 16 0.00
878 599 0.11
879 181 0.03
880 2 0.00
881 3 0.00
882 3 0.00
883 10 0.00
884 6 0.00
885 491 0.09
886 6 0.00
887 2 0.00
888 198 0.04
889 7 0.00
890 314 0.06
891 419 0.08
892 447 0.08
893 166 0.03
895 3 0.00
896 288 0.05
899 9 0.00
900 518 0.10
901 82 0.02
902 5 0.00
903 176 0.03
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGATTGGCAG
CACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19075775 original size:26 final size:26
Alignment explanation
Indices: 19075723--19075775 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19075713 GTTGACTTAG
* * *
19075723 GCATACGGATTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19075749 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19075775 G
1 G
19075776 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19078252 original size:26 final size:26
Alignment explanation
Indices: 19078216--19078265 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
19078206 GGCTTAGGCG
*
19078216 TACGGAGTTCATT-TCCAGTCTAAGCA
1 TACGAAGTTCATTGT-CAGTCTAAGCA
19078242 TACGAAGTTCATTGTCAGTCTAAG
1 TACGAAGTTCATTGTCAGTCTAAG
19078266 ATTGGACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTGTCAGTCTAAGCA
Found at i:19078946 original size:745 final size:746
Alignment explanation
Indices: 19077490--19078984 Score: 2315
Period size: 745 Copynumber: 2.0 Consensus size: 746
19077480 TGGGTTGACT
** *
19077490 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTAGCACATGCT
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCT
* * *
19077555 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGG
66 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGCCGG
*
19077620 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCAGAGAGGGGTGTGCGCATAAGA
131 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCAGAGAGGGGTGTGCGCACAAGA
* *
19077685 TGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCGCCCTATCCCTCATCAAACCTCGAGAAC
196 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCGCCCTATCCCTCATCAAACCTCCAGAAC
*
19077750 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTATG
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTATG
*
19077815 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
326 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTT
* *
19077880 TTTATGAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCATTCTGA
391 TTTATGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCATTCCGA
*
19077945 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGCTTCAAAAATCATGAAAAATAGAAAACGAGTCG
456 AAAAATTTTAAAAAATCCCGAACCGAAAAAAGCTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
19078010 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACATGCCATAAAAAA
521 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAA
* * * *
19078075 GGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATTGATCCATGACT
586 GGAATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGACT
* * * *
19078140 TGCGCATCCCGTCTCTTTGGGCGGCGTAGTGCCCGTCTGCCCGCCCACCCACTCATTTCGTCGGT
651 TGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCCCACCCACTCATTTCGTCGGT
*
19078205 TGGCTTAGGCGTACGGAGTTCATTTCC-AGTC
716 TGGCTTAGGCATACGGAGTTCA-TTCCTAGTC
** * * *
19078236 TAAGCATAC-GAAGTTCATTGTCAGTCTAAGATTGGACCAGACGGAGGGTT-CTGGCAGCACATG
1 TAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGC-GGCAGCACATG
** *
19078299 CTGGGCTC-AGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGT
64 CTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGC
* * * * * *
19078363 CGGAGAACCTGACCGGTGGCATTGGGGTTTCGGCGATCGGGGGGGCC-G-GGGGGGTGTGTGCAC
128 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGCCCAGAGAGGGGTGTGCGCAC
*
19078426 ACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTC-CCCTATCCCTCATCAAACCTCC
192 AAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CGCCCTATCCCTCATCAAACCTCC
*
19078490 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
256 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGT
* *
19078555 GTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
321 GTATGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
19078619 AACTTTTTTGTGCATGCCAAAAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCGAAAACTCC
385 AACTTTTTTATGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CC
* * * *
19078684 -TTCCGAAAAAATTTTAAAATATCTCGAACTGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
449 ATTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGCTTCAAAAATCATGAAAAATAGAAAA
19078748 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
514 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
19078813 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATC
579 TAAAAAAGGAATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATC
* * * * * *
19078878 CACGGCTTGCGCATCTCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTT
644 CACGACTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCCCACCCACTCATTT
*
19078943 CGTCGGTTGGTTTAGGCATACGGAGTTCATTCCTAGTC
709 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
19078981 TAAG
1 TAAG
19078985 ATTGGACTGG
Statistics
Matches: 681, Mismatches: 60, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
744 5 0.01
745 523 0.77
746 146 0.21
747 7 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (746 bp):
TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGCCGG
AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCCAGAGAGGGGTGTGCGCACAAGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCGCCCTATCCCTCATCAAACCTCCAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTATG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTT
TTTATGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCATTCCGA
AAAAATTTTAAAAAATCCCGAACCGAAAAAAGCTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAA
GGAATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGACT
TGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCCCACCCACTCATTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCTAGTC
Found at i:19079153 original size:26 final size:26
Alignment explanation
Indices: 19079117--19079169 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19079107 GTTGAGTTAG
*
19079117 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGCCTAA
*
19079143 GCATATGGAGTTCATTGCCAGCCTAA
1 GCATATGGAGTTCATTCCCAGCCTAA
19079169 G
1 G
19079170 TTTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGCCTAA
Found at i:19080926 original size:26 final size:26
Alignment explanation
Indices: 19080889--19080941 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19080879 GTTGACTTAG
19080889 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19080915 GCATAC-GAAGTTCATTCCCAGTGTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
19080941 G
1 G
19080942 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19081794 original size:26 final size:26
Alignment explanation
Indices: 19081758--19081810 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19081748 GTTTACTTAG
19081758 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
19081784 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19081810 G
1 G
19081811 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19082692 original size:26 final size:26
Alignment explanation
Indices: 19082663--19082715 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19082653 GTTGACTTAG
*
19082663 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATATGGAGCTCATTCCCAATCTAA
*
19082689 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGCTCATTCCCAATCTAA
19082715 G
1 G
19082716 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGCTCATTCCCAATCTAA
Found at i:19083598 original size:26 final size:26
Alignment explanation
Indices: 19083569--19083621 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19083559 GTTGACTTAG
19083569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19083595 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19083621 G
1 G
19083622 ATTGGACCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19084147 original size:894 final size:894
Alignment explanation
Indices: 19081000--19086033 Score: 7002
Period size: 894 Copynumber: 5.6 Consensus size: 894
19080990 ATCGTAGGAG
* * *
19081000 CATCGCCGGAGAACCTGACCGACGGCATTGTGGTTCCGACGATC--GGGGGCCCGCGGGGTGTGC
1 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
19081063 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
19081128 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
19081193 AGTGTCTGAAATGGGGACACGTTTTTCAAATGGCCAAAAAATCTTGTACACTTCCAGTTTTTAGC
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
19081258 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGAATCATGCCTACCAA-TATTGGGGCCAAAAC
261 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCCAAAAC
* * **
19081322 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAA
325 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * *
19081387 AATGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
390 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
19081452 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAA
455 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * ** *
19081517 TCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCGTGTCCGCCCACTCGT
520 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCGT
* * * * * * *
19081582 TTCTTCGATTGGCTTAAGCATACGAAGTTCATTCTCAGTCTAAGATTGGACCAGACCGAGGGTTA
585 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTG
* * * *** * * *
19081647 CAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCAATCCCCAGCTTGCGCATCCTGCCCC
650 CGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * * *
19081712 TCTAGC-CGGCTGAGCGCCCGTACACTCGTTTTGTGGGTTTACTTAGGCATACGGAGTTCATTCC
715 TCTGGCTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * ** *
19081776 CAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTACGGCAGCAC
780 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAC
* * ** *
19081841 ATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAG
845 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCG-GG-------G-C--AC
* ** **
19081902 CATCGCCGGAGAACCTGATCGGTGGCATTGGGGTTCCGACGATCGGGGGGTTCGGGGGTGGTGTG
1 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTG
*
19081967 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAAC
65 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
19082032 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCGTTA
130 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
19082097 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAC
195 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
19082162 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGGTCCAAAAC
260 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
19082227 TCCTTTCAAAAAAATTTTAAACAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAA
325 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
19082292 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGC
390 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** *
19082357 CATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGA
455 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * ** *
19082422 TCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGGAGTGCCCGTACGCCCGCCCGCCCGCTCGT
520 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCGT
* * * ***
19082487 TTCGTCGGTTGGCTTAGTCATACGGAGTTCGTTCCTAGTCTAAGATCAAACCGGACCGAGGGTTG
585 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTG
** * * ** *
19082552 CGACAGCAGGATCGACAGCATGTAGAGTAGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCC
650 CGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * * *
19082617 TATGG-TCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGCTCATTCC
715 TCTGGCTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * **
19082681 CAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTCGCGGCAGCAC
780 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAC
* *
19082746 ATGCTGGGCTTGGGCATTTGCTGGTGCCACATTTTTCTTCACCGGGGCAC
845 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAC
* * *
19082796 CATCACTAGAGCATCACCGGGGAACCTGACCGACGGCATTGGGGTTCCGGCGATCCGGGGGGGCT
1 CAT--C----G-----CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-CGGGGGGGCC
*
19082861 GGGGGGAGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTAT
54 GGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
19082926 CCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTCCTGC
118 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
19082991 CAGTAGCCATTGACGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATTTTGTACACT
183 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* ***
19083056 TCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATGGGGATCACGTCTACCAAGTT
248 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * ** * ** *
19083121 TTGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATGTCGAACCGCAAAAGGTTTTGAAAATCG
313 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
19083186 TGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
378 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
19083251 GAATTTACAAGCCATTAAAATGGCAATGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
443 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
19083316 ACACCCTATCGATCCATGGCATGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGC
508 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * ** * * *
19083381 CCGGCCGCTCGTTTCCTCGGTTGAATTTGGCATACAGAGTTCATTCCCAATCTAAGATTGGACCG
573 CCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCG
* * * *
19083446 GACTGAGGGTTACGGTAGCAGGATCGGCAGCATACAAAGGGGGACCCGGTCGATCCCCGGCTTGC
638 GACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGC
* * *
19083511 GCATCCCGCCCCTCTGGCTAGG-GGAGTGCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATAC
703 GCATCCCGCCCCTCTGGCTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
19083575 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGCACCGATGG
768 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
**
19083640 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCAC
833 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAC
** *
19083702 CATCGCCGGAGAACCTGACCGGTGGCATCGGGGTTCCGACGATCGGGGGGGCCGTGGGGGGTGTG
1 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTG
* * *
19083767 CGCACATGATGTACGATGGGTGCTAGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
65 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * * *
19083832 CTCAAGAACTCAGAGCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTA
130 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
19083897 AAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
195 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
19083962 CTGAATTTTTTTGTGCATGCCACCAAAAATACAAGGATCACGTCTACCAACTTTGGGGTCAAAAC
260 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
19084027 TCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
325 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
19084092 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
390 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
19084157 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
455 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
19084222 TCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCTCACCCGCCCGCACACTCGT
520 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCGT
* * * * * **
19084287 TTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCATTCTAAGATTGGATCAGACCAACAGTTG
585 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTG
* * * * * * * * **** * *
19084352 CGGTAACAAGATCAGTAGCACGTAAAAGGGGACCTAACCGATCCCTGGCTTGCGCATCCTGCCCC
650 CGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * * * *
19084417 TCT-GCTTGGCAGAGTACCTGCACGCTGGTTTCCTGGGTTGACTTAGGCATACGTAGTTCATTCC
715 TCTGGCTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
19084481 TAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTATGGCAGCAC
780 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAC
** *
19084546 ATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGCGGCAC
845 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAC
* * * * *
19084596 CATCGTCGGAGAACCTAATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAAAGGGGTGTG
1 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG---GGGGGGTG
* * * *
19084661 TGCGCACATGATATGCGATGGGTGCTGGTACTTGGCGCTTGTATTGGCCCCATATCCCTCATCAA
63 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
19084726 ACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
128 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
19084790 TAAAGTGTCTGGAATAGGGACAC-TTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTGT
193 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
19084854 AGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAA
258 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *** * *
19084919 AATCCTTGTGAAAAAATTTTAAAAAATCCCCAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
323 ACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* * *
19084984 AAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTATATGAATTTACAA
388 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
19085049 GCCATAAAAATGGGATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATC
453 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * **
19085114 GATCCACAGCTTGCGCATCCCGTCTCTTTGGCCGGCATAGTGCCCGCCCGCTCG--C-TTC-CTC
518 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACTC
* * * *
19085175 ATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCCGTCTAAGATTGGACCGGATCGAGGGT
583 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGT
* * * * **
19085240 TGTGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTGGCC
648 TGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC
* * * *
19085305 CCTCTGGC-CGGCTGAGTGCCCGCACACTCATTTCGTGGGTTGACATAGGCATACGGATTTCATT
713 CCTCTGGCTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * ** *
19085369 CCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTTTGACAGC
778 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGC
* * *
19085434 ACTTGCTGGGCTCGGGCATGTGCTTGTGCCACATTTTTCTTCACCGGGCCAC
843 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAC
* * * * *
19085486 CATTGCTGGAGAACCTGATCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GAGGGGTGTGC
1 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
*
19085550 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
19085615 TCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
19085680 AGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
**
19085745 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTACAAAACT
261 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
19085810 CCTTCCGAGAAAATTTTAAAAAATCCCAAACCGTAGAAAGTTTCAAAAATCATGAAAAATAGAAA
326 CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
19085875 ACGAGTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCC
391 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
19085940 ATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
456 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
19086005 GCATGGCTTGCGTATCCCGTCTCTCTGGC
521 CCACGGCTTGCGCATCCCGTCTCTCTGGC
19086034 TGGCTGGGCT
Statistics
Matches: 3659, Mismatches: 447, Indels: 66
0.88 0.11 0.02
Matches are distributed among these distances:
886 81 0.02
887 68 0.02
888 306 0.08
890 306 0.08
891 3 0.00
892 1 0.00
893 5 0.00
894 1122 0.31
895 104 0.03
896 81 0.02
897 1 0.00
900 2 0.00
902 40 0.01
904 11 0.00
905 770 0.21
906 755 0.21
907 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGC
GGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
CTGGCTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAC
Found at i:19084500 original size:26 final size:26
Alignment explanation
Indices: 19084463--19084515 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19084453 GTTGACTTAG
* *
19084463 GCATACGTAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19084489 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19084515 G
1 G
19084516 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19085387 original size:26 final size:26
Alignment explanation
Indices: 19085353--19085405 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19085343 GTTGACATAG
*
19085353 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19085379 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19085405 G
1 G
19085406 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19086876 original size:26 final size:26
Alignment explanation
Indices: 19086842--19086894 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19086832 GTTGACATAG
*
19086842 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19086868 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19086894 G
1 G
19086895 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19088634 original size:26 final size:26
Alignment explanation
Indices: 19088605--19088657 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19088595 GTTGACTTAC
*
19088605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19088631 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19088657 G
1 G
19088658 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19089532 original size:26 final size:26
Alignment explanation
Indices: 19089496--19089548 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19089486 GTTGACTTAG
19089496 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
19089522 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
19089548 G
1 G
19089549 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:19090029 original size:899 final size:890
Alignment explanation
Indices: 19086036--19090470 Score: 5534
Period size: 899 Copynumber: 5.0 Consensus size: 890
19086026 TCTCTGGCTG
* * *
19086036 GCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGCGGCACCAT-------CGTC-GG
1 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGAGCGTCTGG
* * * * *
19086093 AGAACCTAATCGGCGGCATTGGGGTTTCGACGATCGG-GGGGACCGAAGGGGGTGTGTGCGCACA
66 AGAACCTGA-CCGTGGCATTGGGGTTCCG-CGATCGGATGGG--CG-A-GGGG-GTGTGCGCACA
* *
19086157 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCATATCCCTCATCAAACCTCGAG
124 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
19086222 AACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
189 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
19086286 CTGGAATAGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTGTAGCTGAAT
254 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* * * * * *
19086351 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAAATCCTTG
318 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCTTTC
* *** * * *
19086416 TGAAAAAATTTTAAAAAATCCCCAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGGG
383 CGAAAAAATTTTAAAAAATCTTGAACC-TAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
19086481 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAA
447 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *** * *
19086546 AATGGGATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACG
512 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCACG
* * * *
19086611 GCTTGCGCATCCCGTCTCTTTGGCCGGCATAGTGCCCGCCCGCTCGCTTC-CTCGTTTCGTTGGT
577 GCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CGC--CGCTCGTTTCGTCGGT
** ** * * * *
19086675 TGGCTTAGGCATACGGAGTTCATTCCCCGTCTAAGATTGGACCGGATCGAGGGTTGTGGTAGTAG
639 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGTGATAGCAG
* *** * ** * ** * *
19086740 GATCGGTAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTGGCCCCTCTAGCCGG
704 GATCGATAGCACATAGAGTGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGG
* * * * *
19086805 CTGAGTGCCCGCACACTCATTTCGTGGGTTGACATAGGCATACGGATTTCATTCCCAGTCTAAGC
769 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * ** *
19086870 ATGCGGAGTTCATTCCCAGTCTAAGATC-AGACCGGATCC-AGGGTTTTGACAGCACTT
834 ATACAGAGTTCATTCCCAGTCTAAGATCGA-ACTGGA-CCGAGGGTTACGACAGCACAT
* * **
19086927 GCTGGGCTCGGGCATGTGCTTGTGCCGCATTTTTCTTCACC-GGG--CCA---CC-ATTG-CTGG
1 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGAGCGTCTGG
* * **
19086984 AGAACCTGATCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGA-GGGGTGTGCGCACATGAT
66 AGAACCTGACCG-TGGCATTGGGGTTCC-GCGATCGGATGGG-CGAGGGGGTGTGCGCACATGAT
* *
19087048 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCCAGAACT
128 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
19087113 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
193 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
19087178 ATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
258 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * * *
19087243 TTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCACATAAACTCCTTCCGA
322 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCA-AAACTCTTTCCGA
* *** * *
19087308 GAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTGG
386 AAAAATTTTAAAAAATCTTGAACC-TAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
19087373 TCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAAT
450 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * *
19087438 GGCATTGGCA-AGCCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATT-GATGCATGG
515 GGCATTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-TTCGATCCACGG
** * *
19087501 CTTGCGTATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
578 CTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCG-CCGCTCGTTTCGTCGGTTG
* * * * * * *
19087566 GATTAGGCATACGAAGTTCATTCCCAGTTTAAGATCAG-CCTGGACCAAGGGTTGCGATAGCAGG
641 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATC-GGACCGAGGGTTGTGATAGCAGG
** ** *
19087630 ATCGGCAGCACGCAGA--GGG----G---GA---CC--C--G-GCATCCCGCCCCTCTGGCCGGC
705 ATCGATAGCACATAGAGTGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGC
* *
19087678 TGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCA
770 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
19087743 TATAGAGTTCATTCCCAGTCTAGGATCGAA-TCGAACCGAGGTTTACGACAGCACAT
835 TACAGAGTTCATTCCCAGTCTAAGATCGAACT-GGACCGAGGGTTACGACAGCACAT
**
19087799 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT-------CG-CTGG
1 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGAGCGTCTGG
* * * *
19087856 AGAACCTAAACAGTGGCATTGGGGTTCTGGCGATCGG-GGGGAC-AGTGGGGTGTGCGCACATGA
66 AGAACCT-GACCGTGGCATTGGGGTTC-CGCGATCGGATGGG-CGAG-GGGGTGTGCGCACATGA
* * * * *
19087919 CGTGCAATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCAAGAAC
127 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
19087984 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
192 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
19088049 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGT
257 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-T
* * *
19088114 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCTAAAACT-TCTTCCG
321 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCT-TTCCG
* *
19088178 AAAAAATTTTAAAAAATCCTT-AACTTTAAAATGTTTCAAAAATCATGAAAAATAGATAACGAGT
385 AAAAAATTTTAAAAAAT-CTTGAAC-CTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
19088242 GGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAA
448 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
19088307 ATGGCATTGGCAAGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
513 ATGGCATTGGC-A-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCAC
* * *
19088370 GGCTTACACATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCCCCCGCCGCCCGCTCGTTTCGTC
576 GGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCG-CCGCTCGTTTCGTC
* * * **
19088435 GGTTGGCTTAGGCATGCGGAGTTCATTCCTAGTCTAAGATCAGATTGAACCGAGGGTT-CCAGTA
636 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGTGA-TA
* * * * * *
19088499 GCAGGTTCGGTAGCACGTAGCA-TAGGACCCGGTCGATCCCCGGCTTGTGCATCCCACCCCTCTG
700 GCAGGATCGATAGCACATAG-AGTGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTG
* * * * * *
19088563 GTTGGCTGAGCACCCGCACGGTCATTTTGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTC
764 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * **
19088628 TAAGCATATAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGTTTACGGTAGCACAT
829 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGACAGCACAT
*
19088690 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGT
1 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCC-GAGCGTC--
* * * *
19088755 TGGAGAACCTGACCGGTGGCATTGTGGTTTCG-G--C-GAT---CGGGGGGGTGTGCACACATGA
63 TGGAGAACCTGACC-GTGGCATTGGGGTTCCGCGATCGGATGGGCGAGGGGGTGTGCGCACATGA
* *
19088813 TGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAAC
127 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
19088878 TCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTTGCCATTAAAGTGTCTG
192 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
19088943 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGCACATTTCGAGTTTTTAGCTGAAGTTT
257 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * *
19089008 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGCCCAAAACTCCTTCCAA
321 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCTTTCCGA
*
19089073 AAAAATTTTAAAAAATCTTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
386 AAAAATTTTAAAAAATCTTGAACCT-AAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
19089138 TCTTGCCGTGAAACTTCACGTGCAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAAT
450 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
19089203 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTTTCGATCCACGGCT
515 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCACGGCT
* *
19089268 TGCACATCCCGTTTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGCTCGTTTCATCGGTTGGC
580 TGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CGC-CGCTCGTTTCGTCGGTTGGC
* * * * *
19089333 ATAGGCATACAGAGTTCGTTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGATAGCAGGATC
643 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGTGATAGCAGGATC
* ** *
19089398 GATAGCACATAGAGTGGGACCCGATCGATCCTCGGCTTGCACATCCCGCCCCTCTGGGCGGCTGA
708 GATAGCACATAGAGTGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTGA
* * * * *
19089463 GTGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCATAC
773 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* *
19089528 GGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGACAGCACAT
838 AGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGACAGCACAT
* * *
19089581 GCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCGGAGCGTCAT
1 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCC-GAGCGTC-T
19089646 CGGAGAACCTGACCGTCGGCATTGGGGTTCCGACGATCGGATGGGCCGAGGGGGTGTGCGCACAT
64 -GGAGAACCTGACCGT-GGCATTGGGGTTCCG-CGATCGGATGGG-CGAGGGGGTGTGCGCACAT
* * * *
19089711 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCTCTTATCAAACCTTGAGA
125 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
19089775 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
190 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
19089840 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACT
255 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-T
* * * *
19089905 TTTTTGTGCATGCCAACAAAAATACATGGATCGCGTCTACCAAGTTTGGGGCCAAAACTCTTTTC
319 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCTTTCC
19089970 GAAAAAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGT
384 GAAAAAATTTTAAAAAATCTTGAACC-TAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
19090035 CGTCTTGCCATGAAACTTCACATGAAAGCTTACGGGACCATTGTATGAATTTACAAGCCATAAAA
448 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
19090100 ATGGCATTTGCACGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATT-GATCCACT
513 ATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-TTCGATCCACG
* * * * * **
19090164 GCTTGCGCATCCCGCCTCTCTTGCCGGTGTATTGCCCAACCGCCCGCCAGCTCGTTTCGTCGGTT
577 GCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCC-GCTCGTTTCGTCGGTT
* * * ** ** *
19090229 GGCTTAGGCATACGGAGTTCATTCCTGGTCTAAGATCAGACCAGATGGAGGGTTGTGGCAGCAAG
640 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGTGATAGCAGG
* ** * * *
19090294 ATCAACGGTACACAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGC
705 ATCGATAGCACATAGAGTGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGC
* * * *
19090359 TGAGCGCCCGTACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
770 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
19090424 TACGGAGTTCATTCCTAGTCTAAGATCAGATC-GGACCGAAGGTTACG
835 TACAGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTACG
19090471 GTAGCAGGAT
Statistics
Matches: 3118, Mismatches: 327, Indels: 190
0.86 0.09 0.05
Matches are distributed among these distances:
870 2 0.00
871 221 0.07
872 438 0.14
873 9 0.00
874 85 0.03
875 9 0.00
876 2 0.00
877 2 0.00
880 3 0.00
883 3 0.00
886 2 0.00
887 83 0.03
888 177 0.06
889 301 0.10
890 19 0.01
891 555 0.18
892 8 0.00
893 7 0.00
894 457 0.15
895 4 0.00
896 3 0.00
897 1 0.00
898 2 0.00
899 639 0.20
900 60 0.02
901 3 0.00
902 23 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGAGCGTCTGG
AGAACCTGACCGTGGCATTGGGGTTCCGCGATCGGATGGGCGAGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCTTTCCGAAAAAA
TTTTAAAAAATCTTGAACCTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCACGGCTTGCACA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGTGATAGCAGGATCGATAGCAC
ATAGAGTGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
TTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGACAGCACAT
Found at i:19090424 original size:26 final size:26
Alignment explanation
Indices: 19090395--19090447 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19090385 GTTGACTTAG
19090395 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19090421 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19090447 G
1 G
19090448 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19090567 original size:185 final size:185
Alignment explanation
Indices: 19090236--19090643 Score: 548
Period size: 185 Copynumber: 2.2 Consensus size: 185
19090226 GTTGGCTTAG
* * ** * ** *
19090236 GCATACGGAGTTCATTCCTGGTCTAAGATCAGACCAGATGGAGGGTTGTGGCAGCAAGATCAACG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAAGGTTACGGCAGCAAGATCAACA
* * ** * * * *
19090301 GTACACAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGCGC
66 GCACACAGAGGGGGACCCGATCGATCCCCGGATTGCCCATCCCGCCCCTCTAGCCGACTGAACGC
* * * *
19090366 CCGTACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATT-CCTAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACC-AGTCTAA
* * * *
19090421 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAAGGTTACGGTAGCAGGATCAATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAAGGTTACGGCAGCAAGATCAACA
*
19090486 GCACGCAGAGGGGGACCCGATCGATCCCCGGATTGCCCATCCCGCCCCTCTAGCCGACTGAACGC
66 GCACACAGAGGGGGACCCGATCGATCCCCGGATTGCCCATCCCGCCCCTCTAGCCGACTGAACGC
19090551 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACCAGTCTAA
* * *
19090606 GCATCCGGAGTTCATTCCCAGTCTAAGATCGGATCAGA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGA
19090644 TCGAGGTCTG
Statistics
Matches: 193, Mismatches: 29, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
185 191 0.99
186 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAAGGTTACGGCAGCAAGATCAACA
GCACACAGAGGGGGACCCGATCGATCCCCGGATTGCCCATCCCGCCCCTCTAGCCGACTGAACGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACCAGTCTAA
Found at i:19091507 original size:26 final size:26
Alignment explanation
Indices: 19091477--19091529 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19091467 GGTAACTTAG
19091477 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
19091503 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19091529 G
1 G
19091530 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19092159 original size:900 final size:897
Alignment explanation
Indices: 19090421--19092449 Score: 2768
Period size: 900 Copynumber: 2.3 Consensus size: 897
19090411 CCTAGTCTAA
*
19090421 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAA-GGTTACGGTAGCAGGATCAAT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACC-AAGGGTTGCGGTAGCAGGATCAAT
* * * * *
19090485 AGCACGCAGAGGGGGACCCGATCGATCCCCGGATTGCCCATCCCGCCCCTCTAGCCGACTGAACG
65 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
19090550 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACCAGTCTAAGCATCCGGA
130 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
19090615 GTTCATTCCCAGTCTAAGATCGGA-TCAGATCGA-GGTCTGCGTCAGCACATGCTGGGCTTGGGC
195 GTTCATTCCTAGTCTAAGATCGAACT-AGACCGAGGGT-TGCGACAGCACATGCTGGGCTCGAGC
* * * ** *
19090678 ATGTGCCGGTGCTACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCGGAGAACCTGATC
258 ATGTGCCGGTGCCACATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCGGAGAACCTGACC
* * * *
19090743 GGCGGCATTGGTGTTCCGGCGATCGAGGGGGCCGGGGGGTGTACGCACAGGGTGTGCGATGGGTG
323 GGCGGCATTGGGGTTCCGACGATCGAGCGGGCCGGGGGGTGTACGCACAGGATGTGCGATGGGTG
*
19090808 CTAGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTCAAGAACTCAAACCCCCTTA
388 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTA
* * * *
19090873 AAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAACTGTCTGAAATGGGGTCACT
453 AAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTAAAATGGGGACACT
* * * *
19090938 TTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTATGCTTGCTA
518 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTATGCATGCCA
19091003 ACAAAAATACAAGGATCACGTCTACCAAGTTGGGCCCAAAACTCCTTCCAAAAAAATTTTAAAAA
583 ACAAAAATACAAGGATCACGTCTACCAAGTTGGGCCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * *
19091068 ATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGTCGTGAAAC
648 ATCCTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
* * * *
19091133 TTCACGTGCAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
713 TTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
* **
19091198 GAAATATGAAGATGTGCCTAAACCCACCCACCACCCTTTCGATCCACGGCTTGGACATCCCGTGT
778 GAAATATGAAGATATGCCTAAACCCACCCACCACCCTTTCGATCCACGGCTTGGACATCCCGCCT
** * *
19091263 CTCTGGCCGGCGTAGTGCCCGCCCACTCGCTC-GTTCGTTTCATCGGTTGGCATAG
843 CTCTGGCCGGCGTAGTGCCCAACCACCCGC-CAGCTCGTTTCATCGGTTGGCATAG
* * * * *
19091318 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCAAGGGTTGCGATAGTAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCAATA
* * * * * * *
19091383 GCATGTAGAGTGGGACCCGATCGATCCTCGGCTTGCTTATCCCGCCCCTCTGGGCGGCTGAGTGC
66 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
19091448 CTGCACGCTTGTTTCATGGGGTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
131 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
19091513 TTCATTCCTAGTCTAAGATCGAACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATG
196 TTCATTCCTAGTCTAAGATCGAACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATG
* * * *
19091578 TGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGT
261 TGCCGGTGCCACATTTTTCTTCACCGAGGCACCATCACCGGAGCATC-GCGGAGAACCTGACCGG
* * *
19091643 CGGCATTGGGGTTCCGACGATCG-GACGGGCCGGGGGGGGTGTGCGCACATGATGTGTGATGGGT
325 CGGCATTGGGGTTCCGACGATCGAG-CGGGCC--GGGGGGTGTACGCACAGGATGTGCGATGGGT
* * * ** * ***
19091707 GCTGGTACTTGGCCCTTATATT-GCCCCCTATCTCTTATCAAACCTTGAGAACTCACACCTTTTT
387 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTT
*
19091771 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
452 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTAAAATGGGGACAC
*
19091836 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATGCC
517 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTATGCATGCC
* * * *
19091901 AACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAAA-TTTAA
582 AACAAAAATACAAGGATCACGTCTACCAAG-TTGGGCCCAAAACTC-CTTCCAAAAAAATTTTAA
*
19091965 AAAATCCTGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
645 AAAATCCTGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATG
* *
19092029 AAACTTCACATGAAAGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCA
709 AAACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
19092094 CGTTGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATT-GATCCACTGCTTGCG-CATC
774 CATAGAAATATGAAGATATGCCTAAACCCACCCACCACCCT-TTCGATCCACGGCTTG-GACATC
* * * * * *
19092157 CCGCCTCTCTTGCCGGTGTATTGCCCAACCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAG
837 CCGCCTCTCTGGCCGGCGTAGTGCCCAACCACCCGCCAGCTCGTTTCATCGGTTGGCATAG
* * * *** * * * **
19092218 GCATACGGAGTTCATTCCTGGTCTAAGATCAGACCAGATGGAGGGTTGTGGCAGCAAGATCAACG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCAATA
* * *
19092283 GTACACAGAGGGGGACCCGATCGATCCCCGGCTTG-TGCATCCCGCCCCTCTGGTCGGCTGAGCG
66 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCT-CATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
19092347 CCCGTACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGA
130 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
* *
19092412 GTTCATTCCTAGTCTAAGATCAGATC-GGACCGAGGGTT
195 GTTCATTCCTAGTCTAAGATC-GAACTAGACCGAGGGTT
19092450 ATGGTAGCAG
Statistics
Matches: 983, Mismatches: 134, Indels: 27
0.86 0.12 0.02
Matches are distributed among these distances:
896 2 0.00
897 261 0.27
898 44 0.04
899 184 0.19
900 475 0.48
901 17 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCAATA
GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCTAGTCTAAGATCGAACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATG
TGCCGGTGCCACATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCGGAGAACCTGACCGGC
GGCATTGGGGTTCCGACGATCGAGCGGGCCGGGGGGTGTACGCACAGGATGTGCGATGGGTGCTA
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAA
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTAAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTATGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTGGGCCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
CTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTC
ACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
ATATGAAGATATGCCTAAACCCACCCACCACCCTTTCGATCCACGGCTTGGACATCCCGCCTCTC
TGGCCGGCGTAGTGCCCAACCACCCGCCAGCTCGTTTCATCGGTTGGCATAG
Found at i:19092406 original size:26 final size:26
Alignment explanation
Indices: 19092377--19092429 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19092367 GTTGACTTAG
19092377 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19092403 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19092429 G
1 G
19092430 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19092556 original size:184 final size:185
Alignment explanation
Indices: 19092218--19092630 Score: 553
Period size: 184 Copynumber: 2.2 Consensus size: 185
19092208 GTTGGCTTAG
* * ** * *
19092218 GCATACGGAGTTCATTCCTGGTCTAAGATCAGACCAGATGGAGGGTTGTGGCAGCAAGATCAACG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTATGGCAGCAAGATCAACA
* * ** * * * *
19092283 GTACACAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGCGC
66 GCACACAGAGGGGGACCCGATCGATCCCCGGATTGCCCATCCCGCCCCTCTAGCCGACTGAGCAC
* * * *
19092348 CCGTACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATT-CCTAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACC-AGTCTAA
* * * *
19092403 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTATGGTAGCAGGCTCAACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTATGGCAGCAAGATCAACA
**
19092468 GCATGCAGA-GGGGACCCGATCGATCCCCGGATTGCCCATCCCGCCCCTCTAGCCGACTGAGCAC
66 GCACACAGAGGGGGACCCGATCGATCCCCGGATTGCCCATCCCGCCCCTCTAGCCGACTGAGCAC
19092532 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACCAGTCTAA
* *
19092587 GCATCCGGAGTTCATT-CTCAGTCTAAGATCGGATCAGACCGAGG
1 GCATACGGAGTTCATTCCT-AGTCTAAGATCAGATCAGACCGAGG
19092631 TCTGTGACAG
Statistics
Matches: 199, Mismatches: 27, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
183 2 0.01
184 134 0.67
185 63 0.32
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTATGGCAGCAAGATCAACA
GCACACAGAGGGGGACCCGATCGATCCCCGGATTGCCCATCCCGCCCCTCTAGCCGACTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACCAGTCTAA
Found at i:19099410 original size:26 final size:26
Alignment explanation
Indices: 19099371--19099423 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19099361 GTTGAGTTAG
* *
19099371 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAATTCATTCATAGTCTAA
*
19099397 GCATACAGAATTCATTCCTAGTCTAA
1 GCATACAGAATTCATTCATAGTCTAA
19099423 G
1 G
19099424 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTCATAGTCTAA
Found at i:19101398 original size:26 final size:26
Alignment explanation
Indices: 19101346--19101398 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19101336 GTTGACTTAG
**
19101346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGAATAA
*
19101372 GCATACGGAGTTCTTTCCCAGAATAA
1 GCATACGGAGTTCATTCCCAGAATAA
19101398 G
1 G
19101399 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGAATAA
Found at i:19102268 original size:26 final size:26
Alignment explanation
Indices: 19102232--19102284 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19102222 GTTGACTTAG
*
19102232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19102258 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19102284 G
1 G
19102285 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19103172 original size:26 final size:25
Alignment explanation
Indices: 19103136--19103188 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
19103126 GGGTTGACTT
* *
19103136 AGCATATGGAGTGCATTCCCTGTCTA
1 AGCATACGGAGTGCATT-CCAGTCTA
*
19103162 AGCATACGGAGTTCATTCCAGTCTA
1 AGCATACGGAGTGCATTCCAGTCTA
19103187 AG
1 AG
19103189 ATCAGAGCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
AGCATACGGAGTGCATTCCAGTCTA
Found at i:19103614 original size:900 final size:904
Alignment explanation
Indices: 19099514--19105836 Score: 8038
Period size: 900 Copynumber: 7.0 Consensus size: 904
19099504 CGCCCCTCTA
* *
19099514 GCACGCTCGTTTCATGGGTTGACTTAGGCAT-CTGGAGTTCATTCCCAGTCTAAGCATACAGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGCATACGGAGT
*** *
19099578 TCATTCCCAGTCTAAGATCAGACTATACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
65 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * *
19099643 GCTGGCGCCGCATTTTTCTTCGTCGGGGGACCATCGCCGGAGCATCGTCAGAAAACCTGACCGGC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGC
* * * * *
19099708 GGCATTGGTGTTCCGACGATCGGGGGGGCCAGGAGGGTGTGCACACATGATGTGTGATGTGGGAT
195 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAC---A----TGATGTGCGAT
* *
19099773 GGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACAC
253 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19099837 CCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATGGGG
318 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
19099902 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
383 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
19099967 TTCCAAAAAAAATACAAGGATCACGCCTACCATGTTTAGGGCCAAAACT-CTTTTCGAAAAAATT
448 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATT
* * * * *
19100031 TAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAGAAATAGAAAACGAGTTGTCTTGCC
512 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
19100096 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
577 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
19100161 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
642 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * **
19100226 CTCGTCTCTTTGGCCG--GTA-TAG--TGCCCGCTCGCCCGCCCGCTCGTTTCGTCATTTGGCTT
707 CCCGTCTCTCTGGCCGACGTAGT-GCCTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
* * * * * *
19100286 ATGCATATGCAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTCCT-GCAGCAGGATC-
771 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTT-GTGGTAGCAGGATCG
* * * * *
19100349 AGCAACACACAGA-GGGGACCTGGCCGATCCCCGGCATGCGCATCCCGCCCCTCTGGCTGGCTGA
835 A-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
19100413 GCGCCC
899 GCGCCC
* * * * * * *
19100419 TCATGCTTGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAATGTAGGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * * * *
19100484 CATTCCCAGTCTAAGATCAGACTGAATCAAGGGTTGCGGTAGCACATGCTAGGCTCGGGTAGGTG
66 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* ** * *
19100549 CTGGTGCTGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGTG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGCG
* * * * *
19100614 GCATTAGGGTTTCGACGATCGGGGGGGCC-GTGGGTTGTGCGCTCATGATGTGCGATGGGTGCTG
196 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
19100678 GTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAG
261 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
19100743 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTT
326 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
19100808 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAA
391 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* *
19100873 AAAATACAAGGATCACGCCTACCAACTTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAA
456 AAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAA
* * *** * *
19100937 ATCTCAAACTGTAAAAAGTTTCAAAAATAAAGAAAAATAGAAGACGAGTCGTCTTGCCATGAAGC
519 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
19101002 TTGACATGAAGGCTTAAGGGACCATTGTACGAATTTAAAAGCCATAAAAATGGCATTGGCATGCA
584 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
19101067 GAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGTCA
649 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * ** * *
19101132 CTCTAGCCGGCGTA--G--TGCCCGCCCGCCCATCTGCTCGTTTCATCGGTTGGCTTAGGCATAG
714 CTCTGGCCGACGTAGTGCCTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
** * * ** * * *
19101193 GGAGTTCATTCCCAGTCTAAGATCAGATCTGA-TCGAGGGTTACGGTAGTAGGATCGGCCGCACG
779 GGAGTTCATTCCCAGTCTAAGATTGGACCAGACT-GAGGGTTGTGGTAGCAGGATCGACAGCACG
* * ** * *
19101257 CAAAGGGGGACCCGGTCGATCCTTGACTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCGCCC
843 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* **
19101319 GTACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * * * ** ** *
19101384 CTTTCCCAGAATAAGATCGGACCGGATCGAGGGTTACACCAGCACATGCTGGGCTTAGGCGTGTG
66 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* ** * * *
19101449 CTGGTGCCGTATTTTTCTTAATCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGCG
19101514 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGAAGGGGTGTGCGCACATGATGTGCGATGGGTGC
196 GCATTGGGGTTCCGACGATCGGGGGGGCCGGG--GGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
19101579 TGGTACTTGGCCCTTTTGTTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAA
259 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
** * * *
19101644 AGAGCATTTGAGATTTTATGGGTTTGCTGGCAGTAGCCGTTAAAGTATCTGAAATGGGGACACTT
324 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
19101709 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAA
389 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
19101773 CAAAAATGCAAGGATTACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
454 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * * **
19101838 ATCTCGAACCGT-AAAA-TTTCTTGAAAATCGTGAAAAATAGAAAATGGGTCAACTTGCCATGAA
519 ATCTCGAACCGTAAAAAGTTTC--AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* **
19101901 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACA
582 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
19101966 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
647 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
19102031 CTCTCTAGCCGGCGTA--G--TG----CCCGCTCGCTCGCTCG-TT--TC-----G---AGGCAT
712 CTCTCTGGCCGACGTAGTGCCTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * * * * *** * * *
19102077 ACAGAGTTTACTACCAATCTAAGGTCAAACCGGACTGAGGGTTGTAGTAGCAGGATCGGCAGCAC
777 ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCAC
* * * * * * *
19102142 GCAGAGGGGGACCCGACTGATCCCCGGCTTGCGTATCCCACCCTTCTGGTCGACTGAGCGCCC
842 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
19102205 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
19102270 CATTCCCAATCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
19102335 CTGGTGCCGCATTTTTCTTCGTCGGTGCACAATCCCCGGAGCATCGTCGGAGAACCTGACCGACG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGCG
* * *
19102400 GCATTGGAGTTCC-AGCGATCGGGGGGGCCGGGGGGGTTGTGCGCACATGATGTACGATGGATGC
196 GCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGC
* * * * *
19102464 TGGGGTCCATGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACCTTGAGAACTCACGCACCCT
259 T--GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCACACCCCCT
* * *
19102529 TAATGAGCATTTAAGATTTTACAGGTTTGCCT-ACAGTAGCCATTAAAGTGTCTGAAATGGGGAC
321 TAAAGAGCATTTGAGATTTTACAGGTTTG-CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
19102593 AC-TTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTGGTGCAT
385 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-GTGCAT
* * * * * *
19102656 GCC-AACAAAATATAGGGATAATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTT
449 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
* * * *
19102720 AAAAAATGC-CGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
514 AAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* **
19102784 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTAATG-ATTTACAAGCCAAAAAAATGGGTTT
578 TGAAACTTCACGTGAAGGCTTAAGGGACCATTG-T-ATGAATTTACAAGCCATAAAAATGGCATT
* * *
19102848 GGCACGCAAAAATATGAAGA-GTGCCCTAAAAGCCCACCTA-TA-CCTATCGATCCACGGCTTGC
641 GGCATGCAGAAATATGAAGATGTG-CCT-AAA-CCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19102910 GCATCACGTCTCTCTAGCCGACGTAGTGCCTGCCCACCCGCCCGCACGCTCGTTTCATCGGTTGG
703 GCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGG
* * ** *
19102975 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGTGGGTTGTGACAGTAGGAT
768 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGTAGCAGGAT
* * * * *
19103040 CGACAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGGATCCTG-CCCTTTGGCCGACTG
833 CGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
19103104 AGC-ACC
898 AGCGCCC
* * * *
19103110 GACACGCTTGTTTCGTGGGTTGACTTA-GCATATGGAGTGCATTCCCTGTCTAAGCATACGGAGT
1 G-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* ** * *
19103174 TCATT-CCAGTCTAAGATCAGAGCGGACCGAGCATTACGGCAGCACATGCTGGGCTTGGGCATGT
65 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * *
19103238 GCTGGTGCCGCATTTTTCTTTGTCGGGCCACCATCGCCGGAGCATCG-CTTGAGAACCTGAGCGG
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-AGAGAACCTGACCGG
* * * * *
19103302 CGGCATTGGGGTTTCGGCAACCGGGGGTGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
194 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
19103366 TGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
259 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
19103431 AGAGCATTTGAGATTTTACAGGTCTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
324 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
19103496 TTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
389 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** * * *
19103561 CAAAAATA-AAGGATCACGTCTAAAAAGTTCGTGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAA
454 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
*
19103625 ATC-CTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
519 ATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
19103689 ATTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
583 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
19103754 AGAAAATATGAAGATGCGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
648 AG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * ** * * * *
19103819 CTCTCTGGCCGGCGTAGTAACC-GCCCACCCGCCAACCCGCTCATTTCGTCGATCGGCTTAGGCA
712 CTCTCTGGCCGACGTAGT-GCCTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * *
19103883 TACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTT-TCGGTAGTAGGATCGACAGC
776 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGT-GGTAGCAGGATCGACAGC
* * * ** *
19103947 ACACAGAGGGGGACCCGGCCGATCCCCGACTTGCACATCTAGCCCCTCTGGCCGGTTGAGCGCCC
840 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
19104012 GCACGCTGGTTTTCGTGGGATGACTTAGGTATACGGAGTTCATTCTCAGTCTAAGCATGCGGAGT
1 GCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* *
19104077 TCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCACG
65 TCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* ** * ** * *
19104141 TGCTGGTGCCGTATTTTTCTTTATCGGGGCAGCATCGCTAGAGCATCGCCAGAGAACCTGACCGA
129 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGG
* *
19104206 CGGCATTGGGGTTCCGACAATCGGGGGTGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTG
194 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTG
** * * *
19104271 CTGGTACTTGGCCCTTATATTGGCCCGGTATCCCCCATCAAACCTCGAGAACACACACCCCTTTA
258 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
19104336 AAGAGCATTTGAGATTTTACAGGTTTGTTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
323 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
19104401 TTTTTCAAATAGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
388 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * **
19104466 AAAAAAATAAAAGGATCACGTCT-CCTAAGTTTAGGGCCAAAAGTCCTTCCAAAAAAATTTTAAA
453 AAAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* **
19104530 AAATCTTGAACCGTAAAAAGTTT-TGAAATACGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
517 AAATCTCGAACCGTAAAAAGTTTCAAAAAT-CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
19104594 AACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCTT
581 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
19104659 GCAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
646 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * ** * *
19104724 TCTCCCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
711 TCTCTCTGGCCGACGTAGTGCCTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * * * * * **
19104789 TACAGAGTTCATTCCCAGTATAAGATTGAACCAGACCGGGGGTTGCGGTAGCAGGATTGGTAGCA
776 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCA
* * * ***
19104854 CGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGTAT
841 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
19104918 GCACGCTCGTTTCGTGGGTTAACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * * *
19104983 CATTCCCAGTTTAAGATCAAACTGGACCGAGGGTTGCAGCAGAACATGCTGGGCTTGAGCATGTG
66 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
*** * * *
19105048 CTGGTGCTATATTTTTCTTCGTCGGGTCACCAT----------T-GCCAGAGAACCTGACCGACG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGCG
* * *
19105102 ACATTGGGGTTCCGACGATCGGGGGGG-CTGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTG
196 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
19105166 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
261 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
19105231 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAACCATTAAAGTGTCTAAAATGGAGACACTTTT
326 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
19105296 TGCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAA
391 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * *
19105361 AACATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTCAAAAAA
456 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAA
* * * * * * * *
19105425 TCTTGAATCGTAAAATGTTTCGAAAATTGGGAAAAATAGAAAACTA-TACGTCTTGCCATGAAAG
520 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT-CGTCTTGCCATGAAAC
*
19105489 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATGGGCATGCT
584 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-
* *
19105554 A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGCCTTGCGCATCCCGTC
648 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
19105618 TCTCTGGCC-AGCGTAGTGCCCGCCCACCCGTCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCAT
713 TCTCTGGCCGA-CGTAGTGCCTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
** * * * ** *
19105682 ACAAAGTTCATTCCCAGTCTAAGATCT-GATCGGA-TCGAGGATTGCCGCAGCAGGATCGACAGC
777 ACGGAGTTCATTCCCAGTCTAAGAT-TGGACCAGACT-GAGGGTTGTGGTAGCAGGATCGACAGC
* * ** * **
19105745 ACGCAGATGTGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCATCTGAACGGCTGAGCGCCC
840 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
19105810 GCACGTTCGTTTCATGGGTTGACTTAG
1 GCACGCTCGTTTCGTGGGTTGACTTAG
19105837 ATCGGACCAG
Statistics
Matches: 4740, Mismatches: 587, Indels: 195
0.86 0.11 0.04
Matches are distributed among these distances:
884 4 0.00
885 27 0.01
886 328 0.07
887 198 0.04
888 174 0.04
889 14 0.00
890 9 0.00
891 2 0.00
892 610 0.13
893 15 0.00
894 46 0.01
895 1 0.00
896 16 0.00
897 36 0.01
898 217 0.05
899 430 0.09
900 630 0.13
901 272 0.06
902 78 0.02
903 246 0.05
904 270 0.06
905 380 0.08
906 483 0.10
907 254 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (904 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGCG
GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAG
AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
Found at i:19104983 original size:26 final size:26
Alignment explanation
Indices: 19104947--19104997 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19104937 TAACTTAGGT
19104947 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
19104973 ATACGGAGTTCATTCCCAGTTTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19104998 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19105374 original size:892 final size:890
Alignment explanation
Indices: 19099514--19105836 Score: 7580
Period size: 892 Copynumber: 7.0 Consensus size: 890
19099504 CGCCCCTCTA
* *
19099514 GCACGCTCGTTTCATGGGTTGACTTAGGCAT-CTGGAGTTCATTCCCAGTCTAAGCATACAGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGCATACGGAGT
*** *
19099578 TCATTCCCAGTCTAAGATCAGACTATACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
65 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* **
19099643 GCTGGCGCCGCATTTTTCTTCGTCGGGGGACCATCGCCGGAGCATCGTCAGAAAACCTGACCGGC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGTCACCATCG-C----CA--G--AG--AACCTGACCGGC
* * * * *
19099708 GGCATTGGTGTTCCGACGATCGGGGGGGCCAGGAGGGTGTGCACACATGATGTGTGATGTGGGAT
184 GGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCAC---A----TGATGTGCGAT
* *
19099773 GGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACAC
241 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19099837 CCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATGGGG
306 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
19099902 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
371 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
19099967 TTCCAAAAAAAATACAAGGATCACGCCTACCATGTTTAGGGCCAAAACTCTTTTCGAAAAAATTT
436 TGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
* * * * * *
19100032 AAAAAAATCTCAAACCGTAAAAAG-TTTCAAAAATCATGAGAAATAGAAAACGAGTTGTCTTGCC
500 TAAAAAATCTCGAACCGTAAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
19100096 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
565 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
19100161 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
630 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * ** * * ** *
19100226 CTCGTCTCTTTGGCCGGTATAGTGCCCG---CTCGCCCGCCCGCTCGTTTCGTCATTTGGCTTAT
695 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * * *
19100288 GCATA-TGCAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTCCTGCAGCAGGATCAGC
760 GCATACAG-AGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
* * * *
19100352 AACACACAGA-GGGGACCTGGCCGATCCCCGGCATGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
824 AGCACGCAGAGGGGGACC-GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
19100416 CCC
888 CCC
* * * * * * *
19100419 TCATGCTTGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAATGTAGGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * * * *
19100484 CATTCCCAGTCTAAGATCAGACTGAATCAAGGGTTGCGGTAGCACATGCTAGGCTCGGGTAGGTG
66 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* ** * *
19100549 CTGGTGCTGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGTG
131 CTGGTGCCGCATTTTTCTTCGTCGGGTCACCA---TC---G---C--CAGAGAACCTGACCGGCG
* * * * * *
19100614 GCATTAGGGTTTCGACGATCGGGGGGGCCGTGGGTTGTGCGCTCATGATGTGCGATGGGTGCTGG
185 GCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
19100679 TATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGA
250 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
19100744 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTT
315 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
19100809 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAA
380 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAA
* *
19100874 AAATACAAGGATCACGCCTACCAACTTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
444 AAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
* * * *** * *
19100939 CTCAAACTGTAAAAAG-TTTCAAAAATAAAGAAAAATAGAAGACGAGTCGTCTTGCCATGAAGCT
508 CTCGAACCGTAAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
19101003 TGACATGAAGGCTTAAGGGACCATTGTACGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAG
573 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * * *
19101068 AAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGTCAC
638 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* ** * **
19101133 TCTAGCCGGCGTAGTGCCCG---CCCGCCCATCTGCTCGTTTCATCGGTTGGCTTAGGCATAGGG
703 TCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAG
* * * * * * *
19101195 AGTTCATTCCCAGTCTAAGA-TCAGATCTGATCGAGGGTTACGGTAGTAGGATCGGCCGCACGCA
768 AGTTCATTCCCAGTCTAAGATTGA-ACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCA
* * ** * *
19101259 AAGGGGGACCCGGTCGATCCTTGACTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCGCCC
832 GAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* **
19101319 GTACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * * * ** ** *
19101384 CTTTCCCAGAATAAGATCGGACCGGATCGAGGGTTACACCAGCACATGCTGGGCTTAGGCGTGTG
66 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* ** * * *
19101449 CTGGTGCCGTATTTTTCTTAATCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTG
131 CTGGTGCCGCATTTTTCTTCGTC-GGG-----TCA-C----CATCGCCAGAGAACCTGACCGGCG
19101514 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGAAGGGGTGTGCGCACATGATGTGCGATGGGTGC
185 GCATTGGGGTTCCGACGATCGGGGGGG-CGGG--GGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
19101579 TGGTACTTGGCCCTTTTGTTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAA
247 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
** * * *
19101644 AGAGCATTTGAGATTTTATGGGTTTGCTGGCAGTAGCCGTTAAAGTATCTGAAATGGGGACACTT
312 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
19101709 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAA
377 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
19101773 CAAAAATGCAAGGATTACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
442 -AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
* * * **
19101838 ATCTCGAACCGT-AAAATTTCTTG-AAAATCGTGAAAAATAGAAAATGGGTCAACTTGCCATGAA
506 ATCTCGAACCGTAAAAAGTT-TTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* **
19101901 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACA
570 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
19101966 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
635 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
19102031 CTCTCTAGCCGGCGTAGT----G---CCCGCTCGCTCGCTCG-TT--TC-----G---AGGCATA
700 CTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * * * ** * * **
19102078 CAGAGTTTACTACCAATCTAAGGTCAAACCGGACTGAGGGTTGTAGTAGCAGGATCGGCAGCACG
765 CAGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACG
* * * * * * *
19102143 CAGAGGGGGACCCGACTGATCCCCGGCTTGCGTATCCCACCCTTCTGGTCGACTGAGCGCCC
830 CAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
19102205 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
19102270 CATTCCCAATCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
19102335 CTGGTGCCGCATTTTTCTTCGTCGGTGCACAATCCCCGGAGCATCGTCGGAGAACCTGACCGACG
131 CTGGTGCCGCATTTTTCTTCGTCGG-G-----T---C--ACCATCGCCAGAGAACCTGACCGGCG
* * *
19102400 GCATTGGAGTTCC-AGCGATCGGGGGGGCCGGGGGGGTTGTGCGCACATGATGTACGATGGATGC
185 GCATTGGGGTTCCGA-CGATCGGGGGGG-CGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGC
* * * * *
19102464 TGGGGTCCATGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACCTTGAGAACTCACGCACCCT
247 T--GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCACACCCCCT
* * *
19102529 TAATGAGCATTTAAGATTTTACAGGTTTGCCT-ACAGTAGCCATTAAAGTGTCTGAAATGGGGAC
309 TAAAGAGCATTTGAGATTTTACAGGTTTG-CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
19102593 AC-TTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTGGTGCAT
373 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-GTGCAT
* * * * * *
19102656 GCCAACAAAATATAGGGATAATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTA
437 GCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
* * * * *
19102721 AAAAATGC-CGAACAGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
502 AAAAAT-CTCGAACCGTAAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* **
19102784 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTAATG-ATTTACAAGCCAAAAAAATGGGTTT
566 TGAAACTTCACGTGAAGGCTTAAGGGACCATTG-T-ATGAATTTACAAGCCATAAAAATGGCATT
* * *
19102848 GGCACGCAAAAATATGAAGA-GTGCCCTAAAAGCCCACCTA-TA-CCTATCGATCCACGGCTTGC
629 GGCATGCAGAAATATGAAGATGTG-CCT-AAA-CCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
19102910 GCATCACGTCTCTCTAGCCGACGTAGTGCCTGCCCACCCGCCCGCACGCTCGTTTCATCGGTTGG
691 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCGCCCGCTCGTTTCATCGGTTGG
* * * * * * ** *
19102975 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGTGGGTTGTGACAGTAGGAT
755 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCGGTAGCAGGAT
* * * * *
19103040 CGACAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGGATCCTG-CCCTTTGGCCGACTG
820 CGGCAGCACGCAGAGGGGGACC-GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
19103104 AGC-ACC
884 AGCGCCC
* * * *
19103110 GACACGCTTGTTTCGTGGGTTGACTTA-GCATATGGAGTGCATTCCCTGTCTAAGCATACGGAGT
1 G-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* ** * *
19103174 TCATT-CCAGTCTAAGATCAGAGCGGACCGAGCATTACGGCAGCACATGCTGGGCTTGGGCATGT
65 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * *
19103238 GCTGGTGCCGCATTTTTCTTTGTCGGGCCACCATCGCCGGAGCATCGCTTGAGAACCTGAGCGGC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGTCACCATCG-C----CA------GAGAACCTGACCGGC
* * * * * *
19103303 GGCATTGGGGTTTCGGCAACCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
184 GGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
19103368 GTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
249 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
19103433 AGCATTTGAGATTTTACAGGTCTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
314 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
19103498 TTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
379 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-A
** * * *
19103563 AAAATA-AAGGATCACGTCTAAAAAGTTCGTGGCCAAAAGTCC-TTCTGAAAAAATTTTAAAAAA
443 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAA
19103626 TC-CTGAACCGTAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
507 TCTC-GAACCGTAAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
19103689 ATTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
571 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
19103754 AGAAAATATGAAGATGCGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
636 AG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
** ** * * * *
19103819 CTCTCTGGCCGGCGTAGTAACCGCCCACCCGCCAACCCGCTCATTTCGTCGATCGGCTTAGGCAT
700 CTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * * * *
19103884 ACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTTCGGTAGTAGGATCGACAGCAC
764 ACAGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* * * ** *
19103949 ACAGAGGGGGACCCGGCCGATCCCCGACTTGCACATCTAGCCCCTCTGGCCGGTTGAGCGCCC
829 GCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
19104012 GCACGCTGGTTTTCGTGGGATGACTTAGGTATACGGAGTTCATTCTCAGTCTAAGCATGCGGAGT
1 GCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* *
19104077 TCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCACG
65 TCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* ** * *
19104141 TGCTGGTGCCGTATTTTTCTTTATCGGGGCAGCATCGCTAGAGCATCGCCAGAGAACCTGACCGA
129 TGCTGGTGCCGCATTTTTCTTCGTC--GG--G--T--C---ACCATCGCCAGAGAACCTGACCGG
* *
19104206 CGGCATTGGGGTTCCGACAATCGGGGGTGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTG
183 CGGCATTGGGGTTCCGACGATCGGGGG-GGCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTG
** * * *
19104271 CTGGTACTTGGCCCTTATATTGGCCCGGTATCCCCCATCAAACCTCGAGAACACACACCCCTTTA
246 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
19104336 AAGAGCATTTGAGATTTTACAGGTTTGTTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
311 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
19104401 TTTTTCAAATAGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
376 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-
* * * * *
19104466 AAAAAAATAAAAGGATCACGTCT-CCTAAGTTTAGGGCCAAAAGTCCTTCCAAAAAAATTTTAAA
440 AAAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
* *
19104530 AAATCTTGAACCGTAAAAAGTTTTGAAATA-CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
504 AAATCTCGAACCGTAAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
19104594 AACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCTT
569 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
19104659 GCAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
634 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
19104724 TCTCCCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
699 TCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * *
19104789 TACAGAGTTCATTCCCAGTATAAGATTGAACCAGACCGGGGGTTGCGGTAGCAGGATTGGTAGCA
763 TACAGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
* * ***
19104854 CGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGTAT
828 CGCAGAGGGGGAC-CGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
19104918 GCACGCTCGTTTCGTGGGTTAACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * * *
19104983 CATTCCCAGTTTAAGATCAAACTGGACCGAGGGTTGCAGCAGAACATGCTGGGCTTGAGCATGTG
66 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
*** * * *
19105048 CTGGTGCTATATTTTTCTTCGTCGGGTCACCATTGCCAGAGAACCTGACCGACGACATTGGGGTT
131 CTGGTGCCGCATTTTTCTTCGTCGGGTCACCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTT
* *
19105113 CCGACGATCGGGGGGGCTGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
196 CCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
19105178 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
261 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * * * *
19105243 TTTATAGGTTTGCTGCCAGTAACCATTAAAGTGTCTAAAATGGAGACACTTTTTGCAAATGGACA
326 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
19105308 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAACATACAAGGA
391 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA-ATACAAGGA
* * * *
19105373 TCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTCAAAAAATCTTGAATCGTAA
455 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAA
* * * * * *
19105438 AATGTTTCG-AAAATTGGGAAAAATAGAAAACTA-TACGTCTTGCCATGAAAGTTCACGTGAAGG
520 AAAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGT-CGTCTTGCCATGAAACTTCACGTGAAGG
*
19105501 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATGGGCATGCTA-AAATATGAAG
584 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAAATATGAAG
* * *
19105565 ATGTGCCTAAACCCACCTACCACCCTATCAATCCACGCCTTGCGCATCCCGTCTCTCTGGCCAGC
648 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
19105630 GTAGTGCCCGCCCACCCGTCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAAAGTTCATTC
713 GTAGTGCCCGCCC-CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTC
* * * * * * * * *
19105695 CCAGTCTAAGATCTG-ATCGGATCGAGGATTGCCGCAGCAGGATCGACAGCACGCAGATGTGGAC
777 CCAGTCTAAGAT-TGAACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGA-
** * **
19105759 CCGATCGATCCCCGGCTTGCGCATCCCGCCCATCTGAACGGCTGAGCGCCC
840 CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
19105810 GCACGTTCGTTTCATGGGTTGACTTAG
1 GCACGCTCGTTTCGTGGGTTGACTTAG
19105837 ATCGGACCAG
Statistics
Matches: 4693, Mismatches: 590, Indels: 283
0.84 0.11 0.05
Matches are distributed among these distances:
884 4 0.00
885 29 0.01
886 318 0.07
887 198 0.04
888 178 0.04
889 11 0.00
890 8 0.00
891 11 0.00
892 605 0.13
893 20 0.00
894 49 0.01
895 1 0.00
896 16 0.00
897 38 0.01
898 219 0.05
899 434 0.09
900 597 0.13
901 281 0.06
902 78 0.02
903 249 0.05
904 229 0.05
905 352 0.08
906 485 0.10
907 255 0.05
908 11 0.00
909 1 0.00
910 2 0.00
911 5 0.00
912 1 0.00
913 1 0.00
914 1 0.00
915 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (890 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGTCACCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTT
CCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
AAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
GTGCCCGCCCCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAG
TCTAAGATTGAACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCGGCC
GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
Found at i:19106711 original size:26 final size:26
Alignment explanation
Indices: 19106675--19106725 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19106665 TTGACTTAGG
19106675 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
19106701 CATACGTAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
19106726 GATCAGATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:19107768 original size:901 final size:893
Alignment explanation
Indices: 19105835--19121808 Score: 16515
Period size: 901 Copynumber: 17.8 Consensus size: 893
19105825 GGGTTGACTT
* * *
19105835 AGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAC-CAT
1 AGATCAGACCGGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-CGCAT
** ** * ** *
19105899 TTTTCTTCACCGGGGCACCA-CCCCCGGAGAACCTGACTGGTGGCATTGGGGTTCCGGCG-TCGG
64 TTTTCTTCGTCGGGGCACCATCCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
** * * * *
19105962 AAGGG-CGGGCGGGGTGAGCGCACATGATGTACGAAGGGTGCTGGTACTTGGCCCATATATTGGC
129 GGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
19106026 CCCCTATCCCTCATCAAACCTCGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGT
193 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
19106091 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAAAGGTCACAAAATCTT
258 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
19106156 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAGAAATACAAGGATCACGTCTA
323 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * *
19106221 CCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAATATC-CTGAACCGTTAAAAGTTTC
388 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTC
*
19106285 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
452 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
19106350 CATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCC-AAA
517 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* *
19106414 CCCACCTACC-CCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGC
582 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * * *
19106478 CTGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTTCCAGTCTAAGA
647 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * ** * * *
19106543 -TCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGAACATAGAAGGGGATCCGCTCGATCC
712 TTGA-ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
** * * * ** * *
19106607 CCGGCTCACGCATCGCACCCCTCTAGCCAACTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTT
776 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* *
19106672 AGGCATACGGAGTTCATTCCCAGTCTAAACATACGTAGTTCATTCCCAGTCTA
841 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * * * * *
19106725 AGATCAGATTGGACCGAGGGTTACGACAGCACATGCTGGACTCGAGCAAGTGTTGGTACCGCATT
1 AGATCAGACCGGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * *
19106790 TTTCTTCGCCGGGGCACCAT-CGTCGGAGCATCACCAGAGAACTTGACTGGCGGCATTGGGGTTC
65 TTTCTTCGTCGGGGCACCATCCGTCGGAG-A--A-C------C-TGACCGACGGCATTGGGGTTC
* * *
19106854 TGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCT
119 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
19106919 TATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGAT
184 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
19106984 TTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAAT-GTCA
249 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * * * *
19107048 CAAAATCTTCTACACTTCAAGTTTTTGGCTGAATTTTTTTATGCATGCAAAAAAAAATACAAGTA
314 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * *
19107113 TCACGTCTACCAACTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTTA
379 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA
** * * * *
19107178 AAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCGCGTGAATGCT
444 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
19107243 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTGTAGAAATATGTAGATG
509 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
19107308 TACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGCCGACGTA
574 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * ** *
19107373 GTGCCCGCCCGTCCGCTCGCCCGCTCGTTTCGTCAATTGGCTTAGGCATACAGAGTTCATTCCCA
639 GTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * *
19107438 GTATAAGATTGAACCAGACTAAGGGTGGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCAG
704 GTCTAAGATTGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * *
19107503 TCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGCTCATTTCGTGGG
769 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
19107568 TTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAATGGAGTTCATTCCCAGTTTA
834 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
19107628 AGATCAAACTGGACCGAGGGTTGCTGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATT
1 AGATCAGACCGGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * * * * *
19107693 TTTCTTCATTGGGTCACCAT-TGTTGGAGAACCTGACCGACGACATTGGGGTTCTGACGATCAGG
65 TTTCTTCGTCGGGGCACCATCCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* * *
19107757 GGGGCCGGGGGGGTGGGCACACATGATGTGCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCC
130 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
19107822 CTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
195 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
19107887 GCTGCTAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGACAGAAAATCTTGT
260 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
19107952 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAATACATGGATGACGTCTACC
325 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * * *
19108016 AGGTTTGAGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAA
390 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
* * *
19108081 AATTGTGAAAAATAGAAAATGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
455 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
19108146 TGTCTGAATTTACAAGCCATAAAAATGGCATTGGACAT--AGAAATATGAAGATGTGCCTAAACC
520 TGTATGAATTTACAAGCCATAAAAATGGCATTGG-CATGCAGAAATATGAAGATGTGCCTAAACC
* * * * * *
19108209 CACCTACCACCCCATCGACCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGACCGCCT
584 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * ** * * *
19108274 GCCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATGCAAAGTTCATTCCCAATGTAAGATC
649 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* * ** * ** * *
19108339 GAACCAGACAGTGGGTTGTAGCAGCAGGATCAGCAGCACATAGAGGGGGACGCGGTCAATCCCCG
714 GAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCG
* * * * * *
19108404 GCTTACGCATCCTGCCCCTCTGGCCTGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTGGG
779 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
19108469 CATACGAAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTTCTAGTCTA
844 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
19108519 AGATCAAACCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATT
1 AGATCAGACCGGACCGAGGGTTG-CGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * * ** *
19108584 TTTCTTCATCGGGGCACCAT-CGTCGGAGAGCCTGATCGACGACACTGAAGTTTCGACGATC-GG
65 TTTCTTCGTCGGGGCACCATCCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* * *
19108647 GGGGTCGGGGCGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCC
130 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
19108712 TCTATCTCTCATCAAACCTGGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTT
195 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
19108777 GCTTCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTCCAAATGGCCACAAAAT-TTGG
260 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-G
* *
19108841 TACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAAAAGAAATACAAGGA-CACGTCTAC
324 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
** * * *
19108905 CAAGTTTGGGGGTAAAATTCCTTCC-AAAAAATTTTCAAAAATCGT-GAACCTTAAAAAGTTTCA
389 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-TCGAACCGTAAAAAGTTTCA
*
19108968 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACC
453 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
19109033 ATTGTATGAAATTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAC
518 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
19109097 CCACCTACCACCCTATCGATCCATGACTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCC
583 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * * *
19109162 CGCCCCGTCCACCCGCTTGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
648 CG-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *** * * * *
19109227 TCGGACCGGATTGA-AGTATGCAATAGCAGGATCGACAACACGTAGAGGGGGACCCGATCGATCC
712 TTGAACCAGACTGAGGGT-TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
* * * ** *
19109291 CCGGCTAGCGCATCTCGCCCATCTGAACGGCTGAGCGCCCGCACGCTCGTTTCAT-GG--G--TT
776 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
19109351 --G---AC----TT-A-----AG----A--ATACGGAGTTCATTCCCAATCTA
841 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
19109383 AGATTAGACCAGATCGAGGGTTGCGACAGCACATGCTGGGTTTGGGCATGTGCTGGTGCCGCACT
1 AGATCAGACCGGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
**
19109448 TTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACTACATTGGGGTTCT
65 TTTCTTCGTCGGGGCACCAT--------C--CGTCGGAGAACCTGACCGACGGCATTGGGGTTC-
*
19109513 C-ACGATCGGGGGGGCCGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCT
119 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* ** *
19109577 TATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCACACAGCCTTAAAGAGCAATTGAGAT
184 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
19109642 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCA
249 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
19109707 CAAAATCTTGTACACTTCGAGTTTTTAGCTAAATATTTTTGTGCATGCCAACAAAAATACAAGGA
314 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * * * *
19109772 TCACCTCTACCAAGTTTGGGGCCAAAAAGT-TTTCCAAAAAAATTTTAAAAAATAC-CGAACCTT
379 TCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGT
* * *
19109835 AAAAATTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
442 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * **
19109900 ATTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATTTCATTGGCATGCAGAAATATGAAGA
507 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
19109965 TGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCAT-CCGCTCTCTCTGGCCAGC
572 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-TCTCTCTGGCCGGC
* * * * * * *
19110029 GTAGT----GCTCGCCTGCCCACCCGCTCATTTCATCGGTTCGCTTAGGCATACGGAGTTCATAC
636 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** * * * *
19110090 CCAGTCTAAGATCGAACC-GAACCAAGGGTTACGACAGCAGGATCGGTAGCACGCAGTGGGGGAC
701 CCAGTCTAAGATTGAACCAG-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * * * * * *
19110154 CCGGCCAATCCCCGACTTGAGCATCCCGCCCCTCTAGCCAGTTGAGCACCCGCACGCTCGTTTCA
765 CCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
19110219 TGGGTTGACTTAGGTAGACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
830 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
19110283 AGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATT
1 AGATCAGACCGGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * *
19110348 TTTCATCGTTGGGGCACCATCACCAGAGCATCGTCGGAGAACCTGACCGACGG---T-AGGTTCC
65 TTTCTTCGTCGGGGCACCAT--------C--CGTCGGAGAACCTGACCGACGGCATTGGGGTTCC
* *
19110409 GACGATCGGGGGGGCC-GGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTAC-TGGTCCTT
120 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCCT
* * *
19110472 TATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGATCATTTGAGAT
184 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
19110537 TTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
249 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
19110602 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGA
314 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* *
19110667 TCACGTCTACCAAGTTT-GGGCCAAAACTCATTCCGAAACAATTTTAAAAAATC-CTGAACCGTA
379 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTA
**
19110730 AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
443 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
***
19110795 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATAATTGGCATGCAGAAATATGAAGAT
508 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* *
19110860 GTGCCTAAACCCACCTAACACCCTATCGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGGCGT
573 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
*
19110925 AGTGCCCGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTGGGTTGGCTTAGGCATTA-GGAGTTCAT
638 AGTGCCCGCCCGCCCG--C-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA-TACGGAGTTCAT
* * * * * *
19110989 TCCCAGTCCAAGA-TCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGAGGGGG
699 TCCCAGTCTAAGATTGA-ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * *
19111053 ACCCGATCGATCCCCGACTTGCACATCCCGTCCCTCTGGCCGGCTGAGCGCCTGCATGCTCGTTT
763 ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
19111118 CGTGGGTTGACTTAGGCATACGGAGTTC-TTTCCAGTCTAAGCACACGGAGTTCATTCCCAGCCT
828 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
19111182 A
893 A
* * * * * * *
19111183 AGATC-GAACCAGACCGAGGGTTCCAACAGCACATGCTGGGCTCAGGAATGTGCTGGTGTCACAT
1 AGATCAG-ACCGGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * ** *
19111247 TTTTCTTCGTCGGTGCACCAT-CGACGGAG---C--ATC-AC--C---GGAGAACCTA--A-C--
64 TTTTCTTCGTCGGGGCACCATCCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* * * *
19111295 --CGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTCGCCCTTATATT-ACC
129 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
19111357 CACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
194 C-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * * *
19111422 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTTCAAATGGTTAGAAAATCTC
258 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * *
19111487 GTACACTTCGAGTTTTTGGCAGAATCTTTTTGTGCGTGCCAACAAAAATACAAGGATCACGTCTA
323 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * *
19111552 CCATGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAATCTC-AACTGTAAAAAGTTTC-
388 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
** * *
19111615 AAAATCACGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACC
453 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
19111680 ATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGAGGTGCCTAAAC
518 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * ** * *
19111745 CTACCTACCATCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGTTGGCGTAGTGCCAGCT
583 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* *
19111810 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
648 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* ** * * * *
19111875 CCG-ACCAGA-TCGAGGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGGCCTGGTTGATC
713 -TGAACCAGACT-GA-GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATC
* * * * * *
19111938 CCCGGCTTGCGCATCCCGCACCTCTGGTCAGCTGAGCGCCCGCACACACGTTTCGTGGATTGACT
775 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
19112003 TAGGCATACGAAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC-G----
840 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
19112042 -GAT----------TGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGACGCATT
1 AGATCAGACCGGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * **
19112096 TTTCTTCGCCGAGGCACCATCACTGGAGCATCACCAGAGAACCTGACCGGTGGCATTGGGGTTCC
65 TTTCTTCGTCGGGGCACCATC-C----G--T---CGGAGAACCTGACCGACGGCATTGGGGTTCC
* * *
19112161 GACGATCAGGGGGGCC--GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACATGGCCCTT
120 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
19112224 ATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAGAGAACATTTGAGATT
185 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
19112289 TTACAGGTTTGTTGCCAGTAGCCATT-AAGTG-CTTGAAATGGGGATACTTTTTTCAAAAGGTCA
250 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCA
* *
19112352 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
314 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * * *
19112417 TCACGTCTACCACGTTTGGGGCCAAAACTCCTTTC-AAAAATATTTTAAAAAATCCCGAACCGCA
379 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCTCGAACCGTA
* * *
19112481 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACCTGAAGGC
443 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
19112546 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
508 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * *
19112611 GTGCCTAAATCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGT
573 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * *
19112676 GGTGCCCACCCACCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
638 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * *
19112741 AGTCAAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATTGGTAGCATGCAGAGGGGGACCC-
703 AGTCTAAGATTGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * *
19112805 GACAGATCCTCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGGTCGTTCCGTG
768 GTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
** *
19112870 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACATAATTCATTCCCAGTCTA
832 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * **
19112932 AGATCGGACCAGACCGAGGGTTGCAGCAGGACATGCTGGGCTCGAGCATATGCTGGTGCTACATT
1 AGATCAGACCGGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* *
19112997 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACTGGCGGCATTGGGGTT-C
65 TTTCTTCGTCGGGGCACCAT--CC---G-----TCGGAGAACCTGACCGACGGCATTGGGGTTCC
** * **
19113061 GACGATCGAAGGGGCCGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTCATACTTGGCCCTT
120 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
19113126 ATAGTGGCCCCCTATCCCTCATCAAAGCTTGAGAACTCACACGCCCTTAAAGAGCATTTGAGATT
185 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * * *
19113191 TTATAGATTTGCTGCCTGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTGAC
250 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
19113256 AAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATG-CGAAAAAAATACGAGGAT
315 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
*
19113320 CACGTCTACC-AGTTTGGGGCCAAAACTCCTTCC-AAAAGAATTTTAAAAAATCTCGACCCGTAA
380 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCTCGAACCGTAA
* * * *
19113383 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCCG-CTTGCAATGAAACTTGACGTGAAGGC
444 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT-CGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
19113447 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGAT
508 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * *
19113512 GTGCCAAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-AT
573 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * * * * *
19113575 -GT-ACTGCCCGCCCGCCTGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCT
638 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * ** * * *
19113638 AGTCTAAGA-TCAGACCAGACCGAGGGTTATGGCAGCAGGATCGACAGCACGCAGAAGGGGCCCC
703 AGTCTAAGATTGA-ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * * * *
19113702 GATCGAT-CTCAGCTTGTGCATCCCGCCCCTCTAGCCGGTTGAGCGCCCGCACGCTCGTTTCGTG
767 GGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * *
19113766 GGTTAACTTAGGCATACAGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTA
832 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
19113828 AGATCAGATCGGACCGAGGGTTACGGCTGCACATGCTGGACTCGGGCATGTGTTGGTGCTGCATC
1 AGATCAGACCGGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * ** * *
19113893 TTTCTTCATCGGGGCACCAT-CGTCGGAGCATCACTGGAGAACCGTAAAAAG-TTTGGGG--CCA
65 TTTCTTCGTCGGGGCACCATCCGTCGGAG-AAC-CT---G-ACCG---ACGGCATTGGGGTTCCG
** ***** * ** * * * *** * *
19113954 AAAATATTTCTGAG--GGTTGCG-GT-AGCACAT-ACTGGGCTCGGGCATGTGCTGGT--GTCGC
121 ACGAT-CGGGGGGGCCGGGGGGGTGTGCGCACATGA-TGTGCGATGG---GTGCTGGTACTTGGC
** * * * ** * * * ** ** * *
19114012 ATTTTTCTTCGCCGGGGCACC-ATCGCCGGAGC-ATCGTCAGAGAAC-CTGACCGGC-GACATTG
181 CCTTATATTGGCC----C-CCTATC-CCTCATCAAACCTC-GAGAACTCACACCCCCTTA-A-AG
** * **** * *** * * * *
19114073 -GGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGC-GCACA-T-GATGTGTGATGGGTGCTAGT
237 AGCATT-TGA-GAT-----TTTAC-A---GGTTTGCTGC-CAGTAGCCAT-TAAAGTGT-CT-GA
* * * * ** ** * * ** *** ***
19114134 ACT-TGG-CCCTTATATTGGCCCCTATCCCTCATC-AAACCTTGAGAACTCACACCCCCTTAAAG
287 AATGGGGACACTT-T-TT---TCAAAT-GGTCA-CAAAATCTT--GTA--CACTTCGAGTT-TTT
** * * *
19114196 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTT
340 AGC---TGA-ATTTT-----TTTG-TG-CA-T-GCCAAAAAAAAT-AC---AA---GGATCACGT
* ** * * * * ***
19114259 TTTTCAA--AT-GGTCACGAAATCTTGTACACTTCTAGTTTTTAGTTGAATGTTTTTGTGCATGC
385 CTACCAAGTTTGGGGC-C-AAAAC---T-C-CTTC-CG-----A----AA--AAATT-T---T--
** * ** * * * **
19114321 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAA
425 --A-AAAAAT-C-TCGAAC-CG--TAAAAAGTTT-----CAAAAAT-CGT---GAAAAATAGAAA
* * * *** * * * * *** * * * **
19114386 A-AAATC-CCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTC-TTGCCC
473 ACGAGTCGTCTTGCCAT-GAAA-CTTC----A-CGTGAAGGCT---TAA-GGGAC--CATTG-TA
* * * ** * * *
19114448 TGAAACTTCACGTGAAAG-CTTAAAGGACCATTGTTTGAATTTACAAGCCATAAAAATG--GCAT
524 TG-AA-TTTAC----AAGCCATAAA--A--A-TG---GCATTGGCATG-CAGAAATATGAAG-AT
*** ** **** * * * *
19114510 -TGGCAC-ACAGAAATATGAATATGTGCCTAAACACACCTACCAC-CCTAT-CG-ATCCACGGCT
573 GT-GC-CTA-A-ACCCA--CCTACCACCCT-ATC-GA--T-CCACGGCT-TGCGCATCC-CGTC-
* * ** ** * **
19114570 TGCGCAT-CCCATC-TCTCTGGCCGACATAGTGCCCGCCCGTCCGTCCAGCTCGGTTT-GTCGGT
624 T-CTC-TGGCCGGCGT-AGTGCCCG-C---CCGCCCGCCCG--C--CC-GCTC-GTTTCGTCGGT
* * ** * * * * *
19114632 TGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGA-TCAGACTGGACTAAGGGTTACAGAAGTA
676 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGACTGAGGGTTGCGGCAGCA
* * ** * * *
19114696 GGATTGACAGCACATAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCT
740 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
19114761 ACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAG
805 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19114826 CATACGGAGTTCATTCCCAGTCTA
870 CATACGGAGTTCATTCCCAGTCTA
* * * *
19114850 AGATCGGACCAGACCGAGGGTTACGGCAGCACGTGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
1 AGATCAGACCGGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * * *
19114915 TTTCTTCGCCGGGGCACCAT-CGTCGGAGAACCTGATCGGCCGCATTGGGGTTCTGACAATCGGG
65 TTTCTTCGTCGGGGCACCATCCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* * * *
19114979 GGGGACGGGGGGGTGTGAG--C---A--TGCGATGGGTGCTGGTACTTGGCCCTAATATTGGTCC
130 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
19115037 CCTATCTCTCATTAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
195 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* **
19115102 GCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTAA
260 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
19115167 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATATAAGCATCACGTCTACC
325 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* ** * *
19115232 AAGTTT-GGGCCAAAAATCCTTAAGAAAAAATTTTAAAAAATC-CGAAACCGCAAAACGTTTCAA
390 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG-AACCGTAAAAAGTTTCAA
* * * *
19115295 AAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCA
454 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
** * *
19115360 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACGTAAACC
519 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
19115425 CACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGTCGGCATAGT----GCCC
584 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* *
19115486 GCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA-TGAGTTCATTCCCAGTCTAAGA-T
649 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* * * * * * * *
19115549 CAGACCGGACAGAGGGTTGTGGCAGCAAGATCGGTAGGACGCAGATGGGGACCCGGTCGATCCCC
714 GA-ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCC
* * * * *
19115614 GGCATACGCATCCCGCCACTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAG
778 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
19115679 GCATACGGAGTTTATTCCAAGTCTAAGCATACGGAGTTTATTCCCAGTATA
843 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * **
19115730 AGATCAGACCAGACCGAGGGTTGCGACAGCCCATGCTGGACTCGGGCATGTGCTGGTGCTACATT
1 AGATCAGACCGGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * *
19115795 TTTCTTTGTCGGGGCACCATCGCCGGTGCATCGTCGGAGAACCTGATCGGCCGCATTGGGGTTCC
65 TTTCTTCGTCGGGGCACCA-------T-C--CGTCGGAGAACCTGACCGACGGCATTGGGGTTCC
* **
19115860 GACGATC-AGGGGGCCGGTTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
120 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
19115924 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
185 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * *
19115989 TTGCAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATCGTCAC
250 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
19116054 AAAATCTTTTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGAT
315 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * * *
19116118 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAATAATTTTAAAAATTCTTGAACCGCAAA
380 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
*
19116183 AAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
445 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
19116248 AAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
510 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * *
19116313 TCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGACGTAG
575 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* ** **
19116378 TGCCCGCCC-ACC-TAC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAG
640 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * ** * * *
19116440 TCTAAGATCGAACCGGACTGAGGTTTATGGTAGCAGGATTGGCAGCATGCAGAGGGGGACCCGGT
705 TCTAAGATTGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGT
19116505 CGATCCCCGGCTT--GCA----------C---CC-GC--A-------CA--CTCGTTTCGTGGGT
770 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
19116543 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAATA
835 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC---TA
* * * * * * *
19116605 TCAGACATCGGACCGGACCGAGGGTTACGGCAACACATGCTGGACTCGGGCATGTCCTGCTGCCA
1 --AG--ATCAGACCGGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * *
19116670 TATTTTTCTTCATCGGGGGACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
61 CATTTTTCTTCGTCGGGGCACCATC--C---G--T---CGGAGAACCTGACCGACGGCATTGGGG
* * *
19116735 TT-CGGCGATCGGGGGGGCC-GGGGGGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGC
116 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
19116798 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCTCTTACAGAGCATTTGA
181 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
19116863 GATTTTACAGGTTTGCTGCTAGTAGCCGTTAAAGTGTCTAAAATGGGGACACTTTTTTCGAATGT
246 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
19116928 TGATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAACAAAA
311 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
** * *
19116993 GGATCACGTCTACCAAGTTTGGGGCCAAAAAGCTTTCCGAAAAAATTTTAAAAAATC-CGAAACT
376 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG-AACC
* * * *
19117057 GCAAAAAGTTTCGAAGATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
440 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * *
19117122 GGCTTAAGGGACCATTCTATGAATTTACAGGCCATAAAAATAGCATTGCCATGCAGAAATATGAA
505 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * * *
19117187 GATGTGCCTAAA-CCATCTTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCG
570 GATGTGCCTAAACCCA-CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* ** * * *
19117251 GCTTAGTGCTTGCCAGCCCGCCCGCTCGCTCGTTTCGTCGGTAGGCTTAGGCATACGGAGTTCAT
634 GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* *** * * ** * *
19117316 TCCCAGTCTAAGATTGGACCAGACTGAGGGTTATAGTAGCAGGATTGGCAGCACATAGATGGGGT
699 TCCCAGTCTAAGATTGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * ** * * * * *
19117381 CCTGGCCAATCCCCGACTTATGCATCCCGCCCCTCTGGACGGCTGATCGCCCGTACACTCGTTTT
764 CCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* ** *
19117446 GTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTCATTCTCAGTCTA
829 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
19117511 AGATCAGACCGGACCAAGGGTTATG-GCAGCACATGCTGGGCTTGGG-ATGTGCTGGTGCCGTAT
1 AGATCAGACCGGACCGAGGG-T-TGCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* *
19117574 TTTTCTTCGTCGGGGCACCATCAGCGGAGCATCGTCGGGGAACCTGACCGACGGGATTGGGGTTC
64 TTTTCTTCGTCGGGGCACCAT--------C--CGTCGGAGAACCTGACCGACGGCATTGGGGTTC
** * * * *
19117639 CGATTATC-GGGGGGTCGAGGGGGGTGTGCACATATGATGTGCGATGGGTGCTAGTACTTGGCCC
119 CGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
19117703 TTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
183 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
19117768 TTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
248 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
19117833 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGG
313 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * * * **
19117897 ATCACGTCTACCAAGTTTGGGGACAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCGAACCACA
378 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTA
** *
19117962 AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAACGG
443 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA-GG
*
19118027 -TTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
507 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
*
19118091 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCA
572 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
19118156 TAGTCCCCGCCCGCCC-CGCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCC
637 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * *
19118220 CAATCTAAGATTGGACCAGATTGAGGGTTACGGTAGCAAGATCGGTAGCACGCAGAGGGGGACCC
702 CAGTCTAAGATTGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * *
19118285 GGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATG
767 GGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
19118350 GGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTCTA
832 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
19118412 AGATCGGACTGGACCAAGGGTTGCGACAGCACCTGCTGGGCTCGGGCATGTGCTGGTGTCGCATT
1 AGATCAGACCGGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * **
19118477 TTTCTTCGTCGGGGCACCATTGTCGGAGCATCGTTGGAGAACCTAACCGGTGGCATTGGGGTTCC
65 TTTCTTCGTCGGGGCACCA---T-----C--CGTCGGAGAACCTGACCGACGGCATTGGGGTTCC
* *
19118542 GACGATC-GGAGGGCC-GGGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTACTTGGCCCTT
120 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
19118605 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
185 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
19118670 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
250 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
** * * * *
19118735 AAAATCTTGTACACTTATAGTTTTTAGCTGAA-TTTTCTGTGCACGCCAACAAGAATACAAGGAT
315 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * *
19118799 CACATCTACGAACTTTGGGGCCAAAA---C-TCC----------T------T-T-----CG--AA
380 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
* *
19118836 AA---TC----A---TGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
445 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
19118891 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGT
510 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * *
19118956 GCCTAAACTCACCTACCACCCCATCGATCCACGGCTTGCGTATCCCGTCTCTTTGGCCGGTGTAG
575 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
** * ** *
19119021 TGCCCGCCCGCCCGCCCATCCGCTCGTTTCATCGGTTGGCTTAGGTGTACGAAGTTCATTCCCAG
640 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* ** * * ** * * *
19119086 TCTAAGA-TCAGACTGGA-TCGAGGGTTGTGGCAGCAAGATCAACAACATGCAGAGTGGGACCCG
705 TCTAAGATTGA-ACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
** * * *
19119149 ACCGATCCCCGGCTTGCGCATCCCGCCCATCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGG
768 GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * *
19119214 GTTGACTTAGGCATACGAAGGTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCA
833 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * ** * * *
19119275 AGATCAAACCGGACCGAGGGTTGTGGCAGCACATGAAGGCCTCGGGCATTTGCTGGTGCTGCATT
1 AGATCAGACCGGACCGAGGGTTG-CGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* *
19119340 TTTCTTCGCCGGGGCACCATCACCAGAGTACCGTCGGAGAACCTGACCGACGGTATTGGGGTTCC
65 TTTCTTCGTCGGGG------CACC--A-T-CCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * *
19119405 -AGCGATCGAGGGGGCC-AGGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCT
120 GA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
19119468 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCTTTAAAGAGCATTTGAGAT
184 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
19119533 TTTACAGGTTTGCTGTC-GTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCA
249 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
19119597 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGA
314 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* *
19119662 TCACGTCTACCAAG-TTGGGGCCAAAACTCCTTCC-AAATAAATTTTAAAAAATCCCGAACCGCA
379 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA-AAATTTTAAAAAATCTCGAACCGTA
* ** * * *
19119725 AAAATTTTTGAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGC
443 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * **
19119790 GTAAGGGACCATTGTATTAGTTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
508 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
19119855 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
573 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * *
19119920 AGTGCCCGCCCGCCCGCCCGCCCGTTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCC
638 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * ** * * *
19119985 AGTCTAAGATCGGACCGGATTGAGGGGTGCTACACCAGGATCGACAGCACACAGA-GGGGACCCG
703 AGTCTAAGATTGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* ** * * * * * * *
19120049 GCCGATCCCCGATTTGTGCATCCCACCCTTCTGGCCGGCTGGGCGGCTGCACGCTCGTTTCATGG
768 GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
19120114 GTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCTAGTCTA
833 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * ** *
19120175 AGATCAGATTGGACCGAGGGTTACGACAGCACATGCTAAGCTCGGGCATGTGCTGGTGTCGCATT
1 AGATCAGACCGGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * *
19120240 TTTCCTCGTCGAGGCACCATCACCGGAGTATCACCGAAGAACCTGACCGACGGTATTGGGGTTCC
65 TTTCTTCGTCGGGGCACCAT--CC---G--T---CGGAGAACCTGACCGACGGCATTGGGGTTCC
* *
19120305 GACGATCGGGGGTGCCGGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTT
120 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
19120370 ATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
185 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
19120435 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
250 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
19120500 AAAATCTTGTACACTTCTAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGAT
315 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * * *
19120565 CACGTCTACCATGTTTGGGGCCAAAAATCCTTCCGAAAAAATTGTAAAAAATC-CTGAACCGCAA
380 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAA
*
19120629 AAAGTTTCAAAAA-CATTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
444 AAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
19120693 TTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCATGCAGAAATATGAAAAT
508 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * * *
19120758 GTGCCTAAACCCACCTACCACCCTATCGGTCCACGCCTTGCGCATCCTGTCTTTTTGGCCGGCGT
573 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * * * *
19120823 AATGCCCGCCCCCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGAACTTCATTCCC
638 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * * * ** **
19120888 AGTCTAAGATTGGATCGGACCGAGTGTTGCAGCAGCAGGATCGACAGTACGTAGAGGATGACTTG
703 AGTCTAAGATTGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * * * *
19120953 ATCGAACCTCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGATCGCCCGCACACTCATTTCGTGG
768 GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* ** *
19121018 GTTGATTTAGGCATACGGAGTTCATTCCCAACCTAAGCATATGGAGTTCATTCCCAGTCTA
833 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* *
19121079 AGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATT
1 AGATCAGACCGGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
*
19121144 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGCTTCC
65 TTTCTTCGTCGGGGCACCATC--C---G--T---CGGAGAACCTGACCGACGGCATTGGGGTTCC
* *
19121209 GACGATTGGGGGGGCC-GGGGGGTGTGCG--C---A----C-ATGGGTGCTGGTACTTTGCCCTT
120 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
19121263 ATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATT
185 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* ** * *
19121327 TTACAAGTTTGCTGCTTGTAGCCATTAAAGTGTCTGAAATGGCGACACTTTTTTCAAATGGCCAC
250 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
19121392 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGAT
315 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* ** * *
19121457 CACATCTACCAAGTTTATGGCCAAAACTCCTTCTG---AAA----AAGAAATCTCGAACCGTAAA
380 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
* * * * *
19121515 AAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATTAAACTTTACGTCAAGGCTT
445 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
19121580 AAGGGACCATTGTTTGAATTTAGAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
510 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * * *
19121645 GCCTAAACCCATCTACCACCCTATCGATCCACGG-TTGCGCATCCTGTCTCTCCGACCGACGCAG
575 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* ** * * * *
19121709 TGCCCACCCGCTAGCCCGCCTGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAG
640 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * *
19121774 TCTAAGATTGGACCGGACAGAGGGTTGCGGCAGCA
705 TCTAAGATTGAACCAGACTGAGGGTTGCGGCAGCA
19121809 CATGATGGGC
Statistics
Matches: 12709, Mismatches: 1791, Indels: 1174
0.81 0.11 0.07
Matches are distributed among these distances:
848 59 0.00
850 1 0.00
854 1 0.00
858 3 0.00
859 4 0.00
861 2 0.00
862 182 0.01
863 393 0.03
864 262 0.02
865 2 0.00
866 2 0.00
867 5 0.00
869 7 0.00
870 9 0.00
871 7 0.00
872 130 0.01
873 118 0.01
874 292 0.02
875 492 0.04
876 729 0.06
877 69 0.01
878 376 0.03
879 404 0.03
880 255 0.02
881 25 0.00
882 114 0.01
883 6 0.00
884 116 0.01
885 174 0.01
886 16 0.00
887 5 0.00
888 6 0.00
889 224 0.02
890 506 0.04
891 461 0.04
892 554 0.04
893 129 0.01
894 248 0.02
895 267 0.02
896 240 0.02
897 529 0.04
898 47 0.00
899 85 0.01
900 739 0.06
901 1442 0.11
902 850 0.07
903 949 0.07
904 272 0.02
905 14 0.00
906 8 0.00
907 3 0.00
908 1 0.00
909 71 0.01
910 8 0.00
911 4 0.00
912 7 0.00
914 6 0.00
915 7 0.00
916 2 0.00
917 3 0.00
918 6 0.00
919 7 0.00
920 2 0.00
923 6 0.00
924 5 0.00
925 2 0.00
926 2 0.00
927 1 0.00
928 19 0.00
929 8 0.00
930 4 0.00
931 2 0.00
932 10 0.00
933 2 0.00
934 10 0.00
935 4 0.00
937 7 0.00
938 1 0.00
939 7 0.00
940 2 0.00
941 1 0.00
942 6 0.00
943 1 0.00
946 1 0.00
947 1 0.00
950 3 0.00
951 4 0.00
952 1 0.00
953 2 0.00
955 1 0.00
957 1 0.00
959 1 0.00
960 6 0.00
961 1 0.00
962 5 0.00
963 5 0.00
964 1 0.00
965 9 0.00
967 2 0.00
968 11 0.00
969 1 0.00
970 12 0.00
971 2 0.00
972 4 0.00
973 8 0.00
974 18 0.00
975 2 0.00
976 2 0.00
977 4 0.00
978 1 0.00
979 6 0.00
982 7 0.00
983 6 0.00
984 3 0.00
985 3 0.00
986 5 0.00
987 10 0.00
989 2 0.00
990 6 0.00
991 12 0.00
992 4 0.00
994 1 0.00
995 7 0.00
996 12 0.00
997 14 0.00
998 14 0.00
999 10 0.00
1000 3 0.00
1002 6 0.00
1003 2 0.00
1004 1 0.00
1005 7 0.00
1006 21 0.00
1007 22 0.00
1008 5 0.00
1009 10 0.00
1011 10 0.00
1012 6 0.00
1013 2 0.00
1014 6 0.00
1015 3 0.00
1016 16 0.00
1017 6 0.00
1018 3 0.00
1019 2 0.00
1020 3 0.00
1021 93 0.01
1022 194 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
AGATCAGACCGGACCGAGGGTTGCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCGTCGGGGCACCATCCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA
ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGC
TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
Found at i:19108505 original size:26 final size:26
Alignment explanation
Indices: 19108468--19108520 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19108458 GTTGACTTGG
19108468 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19108494 GCATACTG-AGTTCATTTCTAGTCTAA
1 GCATAC-GAAGTTCATTCCCAGTCTAA
19108520 G
1 G
19108521 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19112910 original size:26 final size:26
Alignment explanation
Indices: 19112881--19112933 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19112871 GTTGACTTAG
* *
19112881 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
*
19112907 GCATACATAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
19112933 G
1 G
19112934 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:19113813 original size:26 final size:26
Alignment explanation
Indices: 19113777--19113829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19113767 GTTAACTTAG
*
19113777 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19113803 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19113829 G
1 G
19113830 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19114836 original size:26 final size:26
Alignment explanation
Indices: 19114800--19114851 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19114790 TTGACTTAGT
19114800 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19114826 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19114852 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:19115708 original size:26 final size:26
Alignment explanation
Indices: 19115679--19115731 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19115669 GTTGACTTAG
*
19115679 GCATACGGAGTTTATTCCAAGTCTAA
1 GCATACGGAGTTTATTCCAAGTATAA
*
19115705 GCATACGGAGTTTATTCCCAGTATAA
1 GCATACGGAGTTTATTCCAAGTATAA
19115731 G
1 G
19115732 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCAAGTATAA
Found at i:19116587 original size:26 final size:26
Alignment explanation
Indices: 19116551--19116602 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19116541 GTTGACTTAG
*
19116551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19116577 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19116603 TATCAGACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19118391 original size:26 final size:26
Alignment explanation
Indices: 19118361--19118413 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19118351 GTTGCCTTAG
19118361 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19118387 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19118413 G
1 G
19118414 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19120154 original size:26 final size:26
Alignment explanation
Indices: 19120124--19120176 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19120114 GTTGACTTAG
19120124 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
* *
19120150 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
19120176 G
1 G
19120177 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:19123143 original size:729 final size:726
Alignment explanation
Indices: 19121054--19123258 Score: 3297
Period size: 729 Copynumber: 3.1 Consensus size: 726
19121044 CCCAACCTAA
* * * *
19121054 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACAGAGGGTTGCG-CAGCACATGCTGGG
* * * *
19121119 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGA-G--CA-T----C
65 CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGGATCACTGGAGC
* * **
19121176 A---CCGGAGAACCTGACCGACGGCATTGGGCTTCCGACGATTGGGGGGGCCGGGGGGTGTGCG-
130 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGGGTGTGCGC
* * * * *
19121237 -C-------AC-ATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTA
195 ACATGATGTACGATGGGTGTTGGTACTTGGCCCCTATATTCGCCCCCTATCCCTCATCAAACCTT
* * **
19121293 GAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTTGTAGCCATTAAAG
260 CAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
19121357 TGTCTGAAATGGCGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
325 TGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
19121422 AATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTATGGCCAAAACTCC
390 ATTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTATGGCCAAAACTCC
*
19121487 TTCTG---AAA---AAGAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACG
455 TTCTGAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACG
* *
19121546 AGTCGTCTTGCCATTAAACTTTACGTCAAGGCTTAAGGGACCATTGTTTGAATTTAGAAGCCATA
520 AGTCGTCTTGCCATTAAACTTTACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATA
19121611 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCA
585 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCA
* *
19121676 CGGTTGCGCATCCTGTCTCTCCGACCGACGCAGTGCCCACCCGCTAGCCCGCCTGCTCATTTCGT
650 CGGTTGCGCATCCTGTCTCTCCGACCGACGCAGTGCCCACCCGCTCGCCCGCCTGCTCGTTTCGT
*
19121741 CAGTTGGCTTAG
715 CGGTTGGCTTAG
*
19121753 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACAGAGGGTTGCGGCAGCACATGATGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACAGAGGGTTGC-GCAGCACATGCTGGG
*
19121818 CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGGATCACTGGAGC
65 CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGGATCACTGGAGC
19121883 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGGAGTGTGCG
130 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGG-GTGTGCG
19121948 CACATGATGTACGATGGGTGTTGGTACTTGGCCCCTATATTCGCCCCCTATCCCTCATCAAACCT
194 CACATGATGTACGATGGGTGTTGGTACTTGGCCCCTATATTCGCCCCCTATCCCTCATCAAACCT
*
19122013 TCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAA
259 TCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
19122078 GTGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCT
324 GTGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCT
19122143 GATTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTATGGCCAAAACTC
389 GATTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTATGGCCAAAACTC
* * * *
19122208 CGTCTGAAAAAATATTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATAATGAAAAACAGAAAA
454 CTTCTGAAAAAAT-TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAA
19122273 CGAGTCGTCTTGCCATTAAACTTTACGTCG-AGGCTTAAGGGACCATTGTTTGAATTTACAAGCC
518 CGAGTCGTCTTGCCATTAAACTTTACGT-GAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCC
19122337 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGAT
582 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGAT
19122402 CCACGGTTGCGCATCCTGTCTCTCCGACCGACGCAGTGCCCACCCGCTCGCCCGCCTGCTCGTTT
647 CCACGGTTGCGCATCCTGTCTCTCCGACCGACGCAGTGCCCACCCGCTCGCCCGCCTGCTCGTTT
19122467 CGTCGGTTGGCTTAG
712 CGTCGGTTGGCTTAG
*
19122482 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACAGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACAGAGGGTTGC-GCAGCACATGCTGGG
*
19122547 TTCAGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGGATCACTGGAGC
65 CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGGATCACTGGAGC
* *
19122612 ATCGCCGGAGAACCTGACCGGCGGCAATGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGC
130 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGGGTGTGCGC
* *
19122677 ACATGATGTACGATGGGTGTTGGTACTTGGCCCCTATATTCACCCCCAATCCCTCATCAAACCTT
195 ACATGATGTACGATGGGTGTTGGTACTTGGCCCCTATATTCGCCCCCTATCCCTCATCAAACCTT
*
19122742 TAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
260 CAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
19122807 TGTCTGAAATGGGGACAATTTTTTCAAATTGACACAAAATCTTGTACACTTCGAGTTTTTAGCTG
325 TGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
19122872 ATTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCATG-TT-TGGACCCAAAACT
390 ATTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTATGG--CCAAAACT
* * * * *
19122935 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAAAAA
453 CCTTCTGAAAAAA-TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAA
* * * * *
19123000 ATGAGTCGTCTTGCCATGAAAATTCACGTGAAGGCTTACGGGACCATT-TTATGAATTTACAAGC
517 ACGAGTCGTCTTGCCATTAAACTTTACGTGAAGGCTTAAGGGACCATTGTT-TGAATTTACAAGC
* * * * *
19123064 CATAAAAATGGTATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGA
581 CATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGA
* * * * * *
19123129 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG------C-C-CGCCCGCCCGCTCGT
646 TCCACGG-TTGCGCATCCTGTCTCTCCGACCGACGCAGTGCCCACCCGCTCGCCCGCCTGCTCGT
* *
19123186 TTTGCCGGTTGGCTTAG
710 TTCGTCGGTTGGCTTAG
* ** *
19123203 GCATACAGAGTTCATTTCC-AGTCTAAGATCAGACCAGACCA-AGGGTTGCGGCAGCA
1 GCATACGGAGTTCA-TTCCTAGTCTAAGATTGGACCGGA-CAGAGGGTTGC-GCAGCA
19123259 GGATCGGTAG
Statistics
Matches: 1379, Mismatches: 87, Indels: 58
0.90 0.06 0.04
Matches are distributed among these distances:
699 105 0.08
700 2 0.00
702 2 0.00
703 1 0.00
707 2 0.00
710 49 0.04
711 7 0.01
713 1 0.00
720 2 0.00
721 129 0.09
722 184 0.13
723 1 0.00
725 3 0.00
726 3 0.00
727 5 0.00
728 427 0.31
729 456 0.33
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (726 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACAGAGGGTTGCGCAGCACATGCTGGGC
TCAGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGGATCACTGGAGCA
TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGGGTGTGCGCA
CATGATGTACGATGGGTGTTGGTACTTGGCCCCTATATTCGCCCCCTATCCCTCATCAAACCTTC
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
TTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTATGGCCAAAACTCCT
TCTGAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGA
GTCGTCTTGCCATTAAACTTTACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAA
AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCAC
GGTTGCGCATCCTGTCTCTCCGACCGACGCAGTGCCCACCCGCTCGCCCGCCTGCTCGTTTCGTC
GGTTGGCTTAG
Found at i:19123397 original size:26 final size:26
Alignment explanation
Indices: 19123361--19123413 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19123351 GTTGACTTAG
19123361 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19123387 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19123413 G
1 G
19123414 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19124304 original size:26 final size:26
Alignment explanation
Indices: 19124268--19124344 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
19124258 TTGACTTAGG
* *
19124268 CATACGGAGTTCATTTCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
*
19124294 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAC
*
19124320 CATACAAAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
19124345 GATCGGACCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:19125223 original size:25 final size:26
Alignment explanation
Indices: 19125189--19125238 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
19125179 TGACTTAGGG
19125189 ATACGGAGTTCATT-CCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
19125214 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19125239 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19126124 original size:26 final size:26
Alignment explanation
Indices: 19126088--19126166 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
19126078 GTTGACTTAG
*
19126088 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19126114 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19126140 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19126166 G
1 G
19126167 ATCAGACCAG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19126598 original size:930 final size:909
Alignment explanation
Indices: 19122609--19132265 Score: 10732
Period size: 932 Copynumber: 10.7 Consensus size: 909
19122599 GGATCACTGG
* * * ** *
19122609 AGCATCGCCGGAGAACCTGACCGGCGGCAATGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTG
1 AGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTG
* * * ** *
19122674 CGCACATGATGTACGATGGGTGTTGGTACTTGGCCCCTATATTCACCCCCAATCCCTCATCAAAC
66 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
** *
19122739 CTTTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
131 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTA
* * *
19122804 AAGTGTCTGAAATGGGGACAATTTTTTCAAATTGACACAAAATCTTGTACACTTCGAGTTTTTAG
196 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * **
19122869 CTGATTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCATGTTTGGACCCAAAAC
261 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * * *
19122934 TCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCATAAAAAGTTTCGAAAATCATGAAAAATAAA
326 ACCTTTCGAAAAAATTTTAAAAAATC-CAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
* * * *
19122998 AAATGAGTCGTCTTGCCATGAAAATTCACGTGAAGGCTTACGGGACCATTTTATGAATTTACAAG
390 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
19123063 CCATAAAAATGGTATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATT
455 CCATAAAAATGGCATTGGCACA-CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATC
*
19123127 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT---CG-T--
519 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCGCTCG
* * * * * *
19123186 TTT-GCCGGTTGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATCAGACCAGACCAAGGGTT
584 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT
* * * * ** * * * *
19123250 GCGGCAGCAGGATCGGTAGCACACAAAGAAGGACCCGGCCGAT-CCTCGACTTGCACATCCAGCC
649 GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCC
* * *
19123314 CCTCTGGCCGGCTG-GGGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
713 CCTCTGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
19123378 CCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATC-G-G-A-C---CGGACCGAGGGTTGC
778 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGTAGCGATCGGACCGAGGGTTGC
* * * * *
19123436 GACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCC
843 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCACC
*
19123501 GG
908 GA
* * *
19123503 AGCATCGCC-AGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGGG
1 AGCATCACCGA-AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-C--GGGGGGG
* *
19123567 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATC
62 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
19123632 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCC
127 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCA
* * * *
19123697 ATTAAAGTTTCTGCAATGGGGACACTTTTTTCAAAAGGTCACAAAATGTTGTACACTTCGAGTTT
192 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * **
19123762 TTAGCTG-ATTGTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTTTACCACGTTTGGACCC
257 TTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
19123826 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCATAAAAAGTTTCGAAAAATCGTGAAA
321 AAAACACCTTTCGAAAAAATTTTAAAAAATC-CAGAACCGTAAAAAGTTTTG-AAAATCGTGAAA
* *
19123890 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATT
384 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
19123955 TACAAGCCATAAAAATGGCATTGGCACACTGAAATATGAAGATGTGCCTAAATCCACCTTCCACT
449 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACC
* * * *
19124020 CTATCTATCCACGGCTTGCGCATCCCGTCTCTCTTGCCGGCGTAGTGCCCGCCCGCTCG-TCCGC
514 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCT-CG-
* *
19124084 CCACTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGA-C
577 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC
* * * ** * * * * *
19124147 TGAGGGTTAG-GGTAGTAGGATCGGTAGCACCCAGAGCAGGACCCGATCAATCCCCGGCTTACAC
642 -GAGGGTT-GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGC
* ** * * * *
19124211 ATCCCACCCCTCTGAACGGCTGAGCCCCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGA
705 ATCCCGCCCCTCTGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
19124276 GTTCATTTCCAGTCTAACCATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGT
770 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---AGT---AG-
* * *
19124341 CTAAGATCGGACCAGATCGAGGGTTGTGGCAGCACATGCTGGGCCCGGGCATGTGCTGGTGCCAC
824 C---GATCGGA-C----CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
19124406 ATTTTTCTTC-GTCGGGGCACCATCGCCAA
881 ATTTTTCTTCACT-GGGGCACCATCACCGA
* * * *
19124435 AGCATCACCGGAGAACCTGATCGGCGGCATTGGGGTTACGACGATCGGGAGGGCCGGTGGGGGGT
1 AGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGGC-G-GGGGGGT
* * *
19124500 GTGCACACATGATCTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCG
63 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
19124565 AACCTCGAGAATTCACACCGCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
128 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
*
19124630 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTT
193 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
19124695 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAA
258 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
19124760 AACTCC-TTCTGAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAAT
323 AACACCTTTC-GAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
* * * * * *
19124824 AGAAAACAATTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGATCGTTGTATGAATTTAC
387 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
19124889 AAGCCATAAAAATTGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
452 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTA
* * * ** * * *
19124954 TCGTTCTACGGCTTGCGCATCCCATCTCTCTGG-TTAGCATAGTGCCCGTCCGCCCGCCCGCCTG
517 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGCC-G
* * * * * * *
19125018 CTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTGCCAGTCTAAGATCAAACCAGACCAAG
580 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
* * *
19125083 GGTTGC-G--GC---A---GCA-CA--CAGAGGGGGACCTGATCGAT-CCTCGGCTTACGCATCC
645 GGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCC
* * * *
19125135 CGTCCCTCTGG-CTGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGGATACGGAGTT
709 CGCCCCTCTGGTCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*
19125199 CATT-CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GA--A-C---CAGACCGAGG
773 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGTAGCGATCGGACCGAGG
* * * *
19125256 GTTACGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCAGTATTTTTCTTCACTGGGGCACCA
838 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCA
*
19125321 TCACCAA
903 TCACCGA
** * * * * *
19125328 AGCATCGTCGGAGAACCTGACCGACAGCACTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGT
1 AGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGT
* *
19125393 ACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAA
65 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
19125458 CCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
130 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
* *
19125523 AAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTA
195 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
19125588 GCTGAATTTTTTTGTGCAAGCGAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAG
260 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
19125653 CACCTTCCAAAAAAATTTTAAAAAATCCAGAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
325 CACCTTTCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
* *
19125718 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTGACAAG
390 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
19125783 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCG
455 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCG
* * * * *
19125848 ATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCTGCCCACCCGTTCGCCACTCGT
520 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCGCTCGT
*
19125913 TTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTA
585 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTG
* * * * * ** * * * * * * *
19125977 TGATAGTAGGATCGGTAGCATGCAGAGCAGGTCCTGATCGATCCTTGGGTTGCACATCCCGCTCC
650 CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCC
** *
19126042 TCTGAACAGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
715 TCTGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* *
19126107 AATCTAAGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCTTTCCCAGTCTAAGATCAG
780 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-CAGAG-----T---AG-C---GATC-G
* * * * * * *
19126172 ACCAGACCGAGGGTTACGACAGTACATACTGGGCTTGGGCTTGTGCTGGTGCCACATTTTTCTTC
830 ----GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
*
19126237 ACTGGGGCACCATCGCCGA
891 ACTGGGGCACCATCACCGA
* * *
19126256 AGCATCACCGAAGAACCTGATCGGCAGCACTGGGGTTCCGACGATCGGGGGGGTCGGCTGGGGGT
1 AGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGG--GGGGGT
* *
19126321 GTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCA
63 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
19126386 AACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCAA
128 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
* * ** *
19126451 TTAAACTGTCTCAAATGGGGACACTTTTTTCAAATATTCACAAAATCTTGTGCACTTCGAGTTTT
193 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
19126516 TAGCTGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAA
258 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** *
19126581 AACACCTTTCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGCAAAAT
323 AACACCTTTCGAAAAAATTTTAAAAAATC-CAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
* * * *
19126645 AGAAAATGAGTCGTCTTGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTCAC
387 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
19126710 AAGCCGTAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
452 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTA
* * * * *
19126775 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGGCGTAGTGCCCGTCCGCCCGCCCGCCTGC
517 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCC-GC
* * * ** *
19126840 TCGTTTCTTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGAAT-GAG
581 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GGATCGAG
* * * * * * *
19126904 GGTTGCGGTAGTAGGATTGACAGCACACAGAAGGGGACCCGACCGAT-CCTCAGCTTACGCATCC
645 GGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCC
19126968 CGCCCCTCTGGTC-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
709 CGCCCCTCTGGTCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* ** *
19127032 CATTCCTAGTCTAAGCATGTGGAGTTCATTCCCAGTCTAAGATCAGA-TCG-GATCGGACCGAGG
773 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGTAGCGATCGGACCGAGG
* * * * * ** * *
19127095 GTTGTGGTAGCACATGCTGGCCTTGGTCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCG
838 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCA
* * *
19127160 TTATCGG
903 TCACCGA
* * * *
19127167 AGCATCATCGAAGAACATGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGTCAGGGGGGGTG
1 AGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-C-GGGGGGGTG
* * * *
19127232 TACGCACTTGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
64 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
19127297 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
129 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT
* *
19127362 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTT
194 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
19127427 GGCTGAATTTTTTTGTGCATGCCAACAGAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAA
259 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * * *
19127492 ACTCCTTCCAAAAAAATTTT-AAAAATCTC-GAGCCGCAAAAAGTTTTGAAAATCATGAAAAATA
324 ACACCTTTCGAAAAAATTTTAAAAAATC-CAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATA
*
19127555 GAAAACGAG-CAGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
388 GAAAACGAGTC-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
19127619 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTACGTAAACCCACCTACCACCCTA
452 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTA
* * * *
19127684 TTGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCTCGCCTGC
517 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCC-GC
* *
19127749 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
581 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGG
* * * ** ** * *
19127814 GTTGTGGTAGCAGGA-CTGGCAGCACACAAAGGGGGACCCG-GTGATTCTATGACCTTCCGGCAT
646 GTTGCGGTAGCAGGATC-GGCAGCACGCAGAGGGGGACCCGACCGA-TCCCTG-GCTTGC-GCAT
** * *
19127877 CCAC-CCCCT-TGGTTGGCTGAGCGCCCCGTTACGCATCGTTTTGTGGGTTGACTTA-GCATACG
707 CC-CGCCCCTCTGGTCAGCTGAGCG-CCCG-CACGC-TCGTTTCGTGGGTTGACTTAGGCATACG
*
19127939 G-GTTCATTCCCAGTCTAAGCATA-GGAGTTCATTTCCCAGTCTAAGATC-G-G-A-C---CGGG
768 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCCAGTCTAAGATCAGAGTAGCGATCGGA
* * * *
19127995 CCGA-GGTTGTGGCAGCACATGCTTGTGCTACGGGCATGTGCTGGTGCTC-CACATTTTCTGCAC
832 CCGAGGGTTGCGGCAGCACATGC-TGGGCT-CGGGCATGTGCTGGTGC-CGCA-TTTTTCTTCAC
* *
19128058 -CGGGCA-CATCGATCGA
893 TGGGGCACCATC-ACCGA
* * * * ** *
19128074 AGCATCA-CGAAGAACCTG-TCGGTGGCAACGTAGGGTTTTGATGATC-GGGGGGCGGCGGGCGT
1 AGCATCACCGAAGAACCTGACCGGCGGC-A-TTGGGGTTCCGACGATCGGGGGGGCGG-GGG-G-
* *
19128136 GTTTGCGCAAATGATGTGCGATGGGTGCTGGTAC-TGGCCGCTTATATTGGCCCCCTATCCCTCA
61 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC-CTTATATTGGCCCCCTATCCCTC-
*
19128200 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA
124 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
19128265 GCAATTAAGGTGTCTGAGAATGGGGACACTTTTTTCCAAATGGTCACAAAATCTTATTACAACTT
189 GCAATTAAAGTGTCTGA-AATGGGGACACTTTTTT-CAAATGGTCACAAAATCTT-GTAC-ACTT
* * * *
19128330 CGAGTGTTTAAGCCTTAATTTTTTTGTGCATGCCATAAAAAAATACAAGGATCCATGGTCTACCA
250 CGAGT-TTTTAG-CTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGAT-CA-CGTCTACCA
* * * * ** **
19128395 GGTTTGGGGCCAAAA-ACTCCTCCGAAAGAATTTTAAAAAATCCCA-AACCACAAAAAGTTCCAG
310 AGTTTGGGGCCAAAACAC-CTTTCGAAAAAATTTTAAAAAAT-CCAGAACCGTAAAAAGTT-TTG
* * *
19128458 AAAATCGTG-AAAATAGAAAATG-GTCATC-TGCTCATGAAACTGTCACGTGAAGGCTTAAAGGA
372 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC-CATGAAACT-TCACGTGAAGGCTTAAGGGA
* * ** *
19128520 CCTATTGTATGGAATTTACATGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCT
435 CC-ATTGTAT-GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCT
* * * *
19128585 AAACCCACCAACCACCCTATCGATCCACGGCTTACGCATCCTGTCTTTCTGGCCGACGTAGTGCC
498 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * * * *
19128650 CGTCTGCCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTA
563 CGCCCGCCCGCTCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * *
19128715 AGATC-GAACCGAATCGAGGGTTATGGTAGCAGGATCGACAGCACACCA-AGGGGGACCCGACCG
627 AGATCAG-ACCGGATCGAGGGTTGCGGTAGCAGGATCGGCAGCAC-GCAGAGGGGGACCCGACCG
* * * *
19128778 ATCCCTGGCTTGCGCATCTCGCCCCTCTGGCCAACTGAGCGCCCACACGCTCGTTTCGT-GGTTG
690 ATCCCTGGCTTGCGCATCCCGCCCCTCTGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
19128842 ACTTAGGCATTCGAAGTTCATTCCCAGTCTAAGGATACGGAGTTCATTCCCAATCTAAGATC---
755 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
19128904 ---G-GATCGGACCGAGGGTTGCGGCAGCACATGCTGGACTCGGGTATGTGCTGGTGCCGTATTT
820 GTAGCGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
** ** *
19128965 TTCTTCGTTGGGGCACCATCGTCGG
885 TTCTTCACTGGGGCACCATCACCGA
* * *
19128990 AGCATCACCGGAGAACCTGACCGGCGGCGTTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGT
1 AGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGT
* * * * ** * ** * *
19129055 GCACACGTCATGTGTGATGGGTGCTGGTACTTGGCTATTATGTTGGCCCCCTATCTGTCATGAAT
65 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * * * *
19129120 CCTCCAGAACTCACACCCACTTAAAGAGAATTTGAGATTTTACAGGTTTCCTGCCAATAGCTATT
130 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
* * *
19129185 AAAGTATATGAAATGGGGACACTTTTTTTCAAATGGT--CAAAA------A-A--TC----TTGT
195 AAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* **
19129235 AGCTGAATTTTTTTGTGCATCCCAACAAAAATACTTGGATCACGTCTACCAAGTTTGGGGCCAAA
259 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
19129300 A-ATCCTTTCAAAAAAATTTTTAAAAAATCCCA-TACCGT-AAAAGATTTTGAAAATCGTGAAAA
324 ACA-CCTTTCGAAAAAA-TTTTAAAAAAT-CCAGAACCGTAAAAAG-TTTTGAAAATCGTGAAAA
*
19129362 ATAGTAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
385 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * ** *
19129427 ACAAGCCATAAAAATAGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
450 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCT-AA---A-C--CCA-CC
* *
19129492 TATCGATGCGCAAGCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAATGTAGT-
507 --T--A----C---CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * *
19129556 ---GCCCGCCCG-T------TTGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCTAGTCT
561 CCCGCCCGCCCGCTCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
19129611 AAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGTAGTAAGCAGAGGGGGACCCTACCGA
626 AAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
** * * ** * * * * * *
19129676 TCCCCAGCCTGCTCATCCCAACCCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCATGGGTTGA
691 TCCCTGGCTTGCGCATCCCGCCCCTCTGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * *
19129741 CTTAGGCATACGAAGTTCATTCCCAGTCTATGCATACGGAGTTTATTCCCAATCTAAGATC-G-G
756 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAG
* * * * *
19129804 -A-C--T-AGACCGAGGGTTGCGGCAGGACATGCCGGGGTCGGGCATGTGCTGGTGCCGTATTTT
821 TAGCGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * *
19129864 TCTTC-GTCGAGGCACCATCATCGG
886 TCTTCACT-GGGGCACCATCACCGA
* * * * * *
19129888 AGCATCGCCGGAGAACCTAACCAGCGGCATTGGCGTTCCGACGATCGGGGGGGCCGAGGGGGTGT
1 AGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGT
* * *
19129953 GCGCACGTGATGTGCGATGGGTACTGGTACCTGGCCCTTATATTGG-CCCCTATCCCTCATCAAA
65 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
19130017 CCTTC-AGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACCGGTTTGCGGCCAGTAGCCAT
130 CC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT
*
19130081 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTT
194 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
19130146 AGCTTAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACTAATTTTGGGGCCAAA
259 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
19130211 ACTCC-TTCTGAAAAAATTTTAAAACATCCCA-AACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
324 ACACCTTTC-GAAAAAATTTTAAAAAAT-CCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
* * * *
19130274 AAAAAATGAGTCATCTTGCCATGAAACTTCACGTGAA-GCTGAAGGGACCATTGTATGAATTTAC
387 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * ***
19130338 AAGCCACAAAAATTGCATTGGCACGTTGAAATATGAAGATGTACCTAAACCCACCTACCACCCTA
452 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTA
* *
19130403 TCGATCCACGGCTTGCGCATACCGTCTCTCTGGCC-AGCGTAGTGCCCGCCTGCCCG-T--CCG-
517 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGCCGC
*
19130463 TC----CG-C--TT-G-TT--TCAT-C-G-G----TT---A--C------CAGA-C---T-GAGG
581 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGG
* * * * * * * * *
19130494 GTTACAGCAGCAGGATCGACAGCATGCAAAGGGGGACCCGACCGATCCCCGGCTTACGCATCCTG
646 GTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCG
** * * * *
19130559 CCCCTCT-GTCAGGCTGAGCGCTTGTACGCTCGTTTCATGAGTTGACTTAGGCATACGAAGTTCA
711 CCCCTCTGGTCA-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
19130623 TTCCCACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TG-G-A-C--T-GGGCCGA-GGT
775 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGTAGCGATCGGACCGAGGGT
* * * * * *
19130680 TGTGGCAGCACATGCTGGGCTCAGGCAAGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCACCATC
840 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATC
19130745 ACC-A
905 ACCGA
* * * * * *
19130749 GAGCATCGTCTGAA-AACCTGACCGGTGGCATTGGGGTTCCGACAATCGTGGGGCCGGGGGGGTG
1 -AGCATC-ACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTG
** * * *
19130813 TATGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGTCCCCCTATCCTTCATCAA
64 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
19130878 ACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT
129 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT
*
19130943 TAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTT
194 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
19131007 AGCTTAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAG
259 AGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
19131072 AACTCC-TTCTGAAAAAATTTTAAGAAATCCAGAACC------------G-----C--AAAAAAT
323 AACACCTTTC-GAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
* *
19131117 AGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTAC
387 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** *
19131182 AAGCCATAAAAATGGCATTGGCGTGA-AGAAATATGAAGATGTACCTAAACCCACCTGCCACCCT
452 AAGCCATAAAAATGGCATTGGC-ACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCT
* * ** *
19131246 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCTGCCATCCCGCCCG
516 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCG-CCG
* * * * *
19131311 CTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCGGACC-GAACTGA
580 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GA
* * * *
19131375 GGGTTGCGGCAGCAGGATCAGCAGCACGTAGAGGGGGACCC-AGTCGATCCCTGGCTTGCGCATC
644 GGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATC
* * * * * * **
19131439 TCGCCCCTCTGGTCGGTTGAGCGCTCGCACACTCATTTTTTGGGTTGACTTAGGCATACGGAGTT
708 CCGCCCCTCTGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
19131504 CATTCCCAGTCTAAGCTTACAGAGTTCATTCCCAGTCTAAGAT-----T-G-GATCGAACCGAGG
773 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGTAGCGATCGGACCGAGG
* * * * **
19131562 GTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGT-CTGCATTATTCTT-TGTCGGGGCACC
838 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACC
* *
19131625 ATCACTGG
902 ATCACCGA
* *
19131633 ATCATC-CTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGA-GATCGGGGGGGCCGGGGGGGG
1 AGCATCAC-CGAAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGG-C-GGGGGGG
*
19131696 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATC
62 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
19131761 AAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCC
127 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCA
*
19131826 ATTAAAGTGTTTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
192 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
19131890 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
257 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * **
19131955 AAACTCCTTTCGAAAAAATTTTAAAAACTCCCGAACCGTACAAAGTTTCAAAAATCGTGAAAAAT
322 AAACACCTTTCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
* *
19132020 ACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTAC
387 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* ** *
19132085 AAGCC-TCTAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
452 AAGCCAT-AAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCT
* * * * *
19132149 ATCGATCCACGGCTTGCACATCCTGTCTCTCTGGCCGACATAGTGCCCACCCGCCTGCAT-GCCC
516 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-TCG-CC
* *
19132213 GCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATC
579 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
19132266 GAACTGAACC
Statistics
Matches: 7508, Mismatches: 921, Indels: 659
0.83 0.10 0.07
Matches are distributed among these distances:
843 39 0.01
844 132 0.02
845 2 0.00
848 3 0.00
849 2 0.00
850 1 0.00
853 1 0.00
854 1 0.00
856 2 0.00
857 1 0.00
858 2 0.00
860 3 0.00
861 108 0.01
862 270 0.04
863 156 0.02
867 3 0.00
868 4 0.00
870 1 0.00
872 1 0.00
874 1 0.00
876 1 0.00
878 3 0.00
879 3 0.00
881 1 0.00
882 4 0.00
883 210 0.03
884 125 0.02
885 202 0.03
886 2 0.00
888 2 0.00
889 53 0.01
890 109 0.01
891 527 0.07
892 64 0.01
893 139 0.02
894 82 0.01
895 7 0.00
896 18 0.00
897 524 0.07
898 428 0.06
899 5 0.00
900 2 0.00
901 88 0.01
902 45 0.01
903 228 0.03
904 8 0.00
905 148 0.02
906 121 0.02
907 101 0.01
908 94 0.01
909 432 0.06
910 378 0.05
911 247 0.03
912 23 0.00
913 42 0.01
914 98 0.01
915 81 0.01
916 71 0.01
917 122 0.02
918 102 0.01
919 71 0.01
920 296 0.04
921 9 0.00
922 2 0.00
923 3 0.00
924 1 0.00
926 1 0.00
927 4 0.00
928 122 0.02
929 1 0.00
930 482 0.06
931 211 0.03
932 622 0.08
933 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (909 bp):
AGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
ACCTTTCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC
GGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCT
CTGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGTAGCGATCGGACCGAGGGTTGCGGC
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGA
Found at i:19127968 original size:25 final size:26
Alignment explanation
Indices: 19127931--19127983 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
19127921 GGGTTGACTT
19127931 AGCATACGGGTTCA-TTCCCAGTCTA
1 AGCATACGGGTTCATTTCCCAGTCTA
19127956 AGCATA-GGAGTTCATTTCCCAGTCTA
1 AGCATACGG-GTTCATTTCCCAGTCTA
19127982 AG
1 AG
19127984 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 2 0.08
25 11 0.42
26 13 0.50
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCATACGGGTTCATTTCCCAGTCTA
Found at i:19129776 original size:26 final size:26
Alignment explanation
Indices: 19129746--19129796 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19129736 GTTGACTTAG
*
19129746 GCATACGAAGTTCATTCCCAGTCTAT
1 GCATACGAAGTTCATTCCCAATCTAT
* *
19129772 GCATACGGAGTTTATTCCCAATCTA
1 GCATACGAAGTTCATTCCCAATCTA
19129797 AGATCGGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAT
Found at i:19130639 original size:26 final size:26
Alignment explanation
Indices: 19130609--19130661 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19130599 GTTGACTTAG
19130609 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
* *
19130635 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
19130661 G
1 G
19130662 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:19132266 original size:903 final size:882
Alignment explanation
Indices: 19130487--19132291 Score: 2500
Period size: 903 Copynumber: 2.0 Consensus size: 882
19130477 CGGTTACCAG
* *
19130487 ACTGAGGGTTACAGCAGCAGGATCGACAGCATGCAAAGGGGGACCCGACCGATCCCCGGCTTACG
1 ACTGAGGGTTACGGCAGCAGGATCGACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTACG
* * * *
19130552 CATCCTGCCCCTCTGTCAGGCTGAGCGCTTGTACGCTCGTTTCATGAGTTGACTTAGGCATACGA
66 CATCCTGCCCCTCTGTCAGGCTGAGCGCTCGCACACTCATTTCATGAGTTGACTTAGGCATACGA
* **
19130617 AGTTCATTCCCACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGGCCGAGGTTG
131 AGTTCATTCCCACTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGAACCGAGGTTG
** * *
19130682 TGGCAGCACATGCTGGGCTCAGGCAAGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCACCATCAC
196 CAGCAGCACATGCTAGGCTCAGGCAAGTGCTGGT-CCTCATTATTCTTCGCCGGGGCACCATCAC
* * * *
19130747 CAGAGCATCGTCTGAAAACCTGACCGGTGGCATTGGGGTTCCGACAATCGTGGGGCCGGGGGGGT
260 CAGAGCATCCTCGGAAAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGCCGGGGGGGT
* *
19130812 GTATGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGTCCCCCTATCCTTCATCA
325 GTACGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCA
* * *
19130877 AACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
390 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCAA
19130942 TTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTT
455 TTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTT
* * *
19131007 AGCTTAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAG
520 AGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
19131072 AACTCCTTCTGAAAAAATTTTAAGAAATCCAGAACCGCAAAAAATAGAAAACGAGTTGTCTTGCC
585 AACTCCTTCTGAAAAAATTTTAAGAAATCCAGAACCGCAAAAAATACAAAACGAGTCGTCTTGCC
*
19131137 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTG
650 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATCAATTTACAAGCCATAAAAATGGCATTG
** * *
19131202 GCGTGAAGAAATATGAAGATGTACCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCAT
715 GCACGAAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
* * * * *
19131267 CCCGTCTCTCTAGCCGACGTAGTGCCCGCCTGCCATCCCGCCCGCTCGTTTTGTCGGTTGGCTTA
780 CCCGTCTCTCTAGCCGACATAGTGCCCACCCGCCATCACGCCCGCTCGTTTGGTCGGTTGGCTTA
* *
19131332 GGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGA
845 GGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGA
* * * * * *
19131370 ACTGAGGGTTGCGGCAGCAGGATC-AGCAGCACGTAGAGGGGGACCC-AGTCGATCCCTGGCTTG
1 ACTGAGGGTTACGGCAGCAGGATCGA-CAGCACGCAAAGGGGGACCCGA-CCGATCCCCGGCTTA
* ** *
19131433 CGCAT-CTCGCCCCTCTGGTC-GGTTGAGCGCTCGCACACTCATTTTTTGGGTTGACTTAGGCAT
64 CGCATCCT-GCCCCTCT-GTCAGGCTGAGCGCTCGCACACTCATTTCATGAGTTGACTTAGGCAT
* * *
19131496 ACGGAGTTCATTCCCAGTCTAAGCTTACAGAGTTCATTCCCAGTCTAAGATTGGA-TCGAACCGA
127 ACGAAGTTCATTCCCACTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACT-GAACCGA
* * * *
19131560 GGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGT-CTGCATTATTCTTTGTCGGGGCAC
191 -GGTTGCAGCAGCACATGCTAGGCTCAGGCAAGTGCTGGTCCT-CATTATTCTTCGCCGGGGCAC
** * * *
19131624 CATCACTGGATCATCCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGA-GATCGGGGGGGCC
254 CATCACCAGAGCATCCTCGGAAAACCTGACCGGCGGCATTGGGGTTCC-GACAATC-GGGGGGCC
* *
19131688 GGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
317 -GGGGGGGTGTACGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTAT
*
19131753 CCTTCATCAAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
381 CCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
* *
19131818 CAATAGCCATTAAAGTGTTTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
446 CAATAGCAATTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
19131883 CGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
511 CGAGTTGTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
*
19131947 TGGGGCCAAAACTCCTT-TCGAAAAAATTTTAA-AAACTCCCGAACCGTACAAAGTTTCAAAAAT
576 TGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAGAAA-TCCAGAA-C---C---G---C----A-
19132010 CGTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGC
624 ----AAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGC
* * * *
19132075 ATGAATTTACAAGCC-TCTAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
685 ATCAATTTACAAGCCAT-AAAAATGGCATTGGCACGAAGAAATATGAAGATGTACCTAAACCCAC
* *
19132139 CTACCACCCTATCGATCCACGGCTTGCACATCCTGTCTCTCTGGCCGACATAGTGCCCACCCGCC
749 CTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTAGCCGACATAGTGCCCACCCGCC
* * *
19132204 -TGCATGCCCGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGA
814 AT-CACGCCCGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGA
*
19132268 ACTGA
878 ACCGA
**
19132273 ACCAAGGGTTACGGCAGCA
1 ACTGAGGGTTACGGCAGCA
19132292 CTTGCTGGGC
Statistics
Matches: 808, Mismatches: 81, Indels: 46
0.86 0.09 0.05
Matches are distributed among these distances:
882 7 0.01
883 221 0.27
884 128 0.16
885 199 0.25
888 1 0.00
891 1 0.00
894 1 0.00
898 1 0.00
902 2 0.00
903 247 0.31
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (882 bp):
ACTGAGGGTTACGGCAGCAGGATCGACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTACG
CATCCTGCCCCTCTGTCAGGCTGAGCGCTCGCACACTCATTTCATGAGTTGACTTAGGCATACGA
AGTTCATTCCCACTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGAACCGAGGTTG
CAGCAGCACATGCTAGGCTCAGGCAAGTGCTGGTCCTCATTATTCTTCGCCGGGGCACCATCACC
AGAGCATCCTCGGAAAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGCCGGGGGGGTG
TACGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCAAT
TAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTA
GCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCTGAAAAAATTTTAAGAAATCCAGAACCGCAAAAAATACAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATCAATTTACAAGCCATAAAAATGGCATTGG
CACGAAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATC
CCGTCTCTCTAGCCGACATAGTGCCCACCCGCCATCACGCCCGCTCGTTTGGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGA
Found at i:19133009 original size:718 final size:715
Alignment explanation
Indices: 19131525--19133009 Score: 2280
Period size: 718 Copynumber: 2.1 Consensus size: 715
19131515 TAAGCTTACA
* *
19131525 GAGTTCATTCCCAGTCTAAGATTGGATCGAACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGA-TCGATCGAACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGC
* * *
19131590 ATGTGCTGGTCTGCATTATTCTTTGTCGGGGCACCATCACTGGATCATCCTCGGAGAACCTGACC
65 ATGTGCTGGTCCGCATTATTCTTCGTCGGGGCACCATCACTGGAGCATCCTCGGAGAACCTGACC
* *
19131655 GGCGGCATTGGGGTTCCGGAGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGG
130 GGCGGCATTGGGG-T-CGGAGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCAACGGG
* **
19131720 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACGTCGAGAACTCACACCCCCT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCCT
19131785 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGACAC
258 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGACAC
19131850 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** *
19131915 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
388 AAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTAATTCCGAAAAAATTTTAAA
* * *
19131980 AACTCCCGAACCGTACAAAGTTTCAAAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCATGAA
453 AACTCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAA
19132045 ACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAATGGCATTGGCACG
518 ACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAATGGCATTGGCACG
* *
19132110 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGT
583 TAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCACATCCTGT
* * **
19132175 CTCTCTGGCCGACATAGTGCCCACCCGCCTGCATGCCCGCTCGTTTGGTCGGTTGGCTTAGGCAT
648 CTCTCTAGCCGACATAGTGCCCACCCGCCTGCACGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
19132240 ACG
713 ACG
* * * * * * *
19132243 GAGTTCATTCCCAGTTTAAGATCGAACTGAACCAAGGGTTACGGCAGCACTTGCTGGGCTTGGGC
1 GAGTTCATTCCCAGTCTAAGATCGATC-GAACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGC
* * * *
19132308 ATGTGCTGGTGCCGCATTCTTGTTCGTCGGGGCACCATC-GTCGGAGCATCGTCGGAGAACCTGA
65 ATGTGCTGGT-CCGCATTATTCTTCGTCGGGGCACCATCACT-GGAGCATCCTCGGAGAACCTGA
* * *
19132372 CCGGCGGCATTGGGG-CGGTGATCTGGGGTGCCGGGGGGGGGTGTGCGCACATGATGTGCAACGG
128 CCGGCGGCATTGGGGTCGGAGATCGGGGGGGCC-GGGGGGGGTGTGCGCACATGATGTGCAACGG
19132436 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCC
192 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCC
* * * *
19132501 TTAAAGAGCATTTGAGATTTTA-AAGGTTTGTTGCCAGTAGCGATTAAGGTGTTTGAAATGGGGA
257 TTAAAGAGCATTTGAGATTTTACAA-GTTTGCTGCCAATAGCCATTAAAGTGTTTGAAAT-GGGA
19132565 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
320 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
19132630 GCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTAATTCCGAAAAATTTTT
385 GCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTAATTCCGAAAAAATTTT
* *
19132695 CAAAAA-TCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
450 -AAAAACTCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCA
* *
19132759 TGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-TAAAATGGCATTG
514 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC-TCTAAAATGGCATTG
* * * * *
19132823 GCACGTAAAAATATGAAGATTTGGCTAAACCCACCTACCACTCTATCGATCCATGGCTTCCGCAT
578 GCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCACAT
* * * *
19132888 CCTGTCTCTCTAGCCGGCGTAGTGCCCGCCCGTCC-GCCCGCCCGCTCGTTTCATCGGTTGGCTT
643 CCTGTCTCTCTAGCCGACATAGTGCCCACCCG-CCTGCACGCCCGCTCGTTTCATCGGTTGGCTT
19132952 AGGCATACG
707 AGGCATACG
* * *
19132961 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCA
1 GAGTTCATTCCCAGTCTAAGATC-GATCGAACCGAGGGTTGCGGCAGCA
19133010 GTGTCGGCAG
Statistics
Matches: 694, Mismatches: 63, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
716 16 0.02
717 147 0.21
718 461 0.66
719 70 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (715 bp):
GAGTTCATTCCCAGTCTAAGATCGATCGAACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
TGTGCTGGTCCGCATTATTCTTCGTCGGGGCACCATCACTGGAGCATCCTCGGAGAACCTGACCG
GCGGCATTGGGGTCGGAGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCAACGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTAATTCCGAAAAAATTTTAAAAAC
TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAATGGCATTGGCACGTAA
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCACATCCTGTCTC
TCTAGCCGACATAGTGCCCACCCGCCTGCACGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
Found at i:19133142 original size:26 final size:26
Alignment explanation
Indices: 19133113--19133165 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19133103 GTTGACTTAG
*
19133113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19133139 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19133165 G
1 G
19133166 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19136694 original size:26 final size:26
Alignment explanation
Indices: 19136658--19136710 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19136648 GTTGACTTAG
19136658 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19136684 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19136710 G
1 G
19136711 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19137108 original size:903 final size:891
Alignment explanation
Indices: 19135781--19143773 Score: 9734
Period size: 903 Copynumber: 9.0 Consensus size: 891
19135771 GTTGACTTAG
* * * * **
19135781 GCATACAGAGTTCATTCCCAATCTAAGATC-AGACCAGACCGAGGGTTGCGATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGTGGCAGCACATGCTGG
* * * *
19135845 GCTCGGACATGTGCTGGTGCCTCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCAT---C---GCA-C--CGGAG
* * ***
19135910 AACCTGATCGGTGGCATTGGGGTTTTGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
120 AACCTGACCGGCGGCATTGGGGTTCCAGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
19135974 GCGATGGGTGCTGCTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
19136039 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19136104 TGGGGAAATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
19136169 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
379 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
19136234 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATCAAAAAATAGAAAACGAGTCGTCT
444 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGT-GAAAAATAGAAAACGAGTCGTCT
* *
19136299 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGG
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
19136364 ATTGGCACAACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACAGCTTG
573 ATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
19136429 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGTCCGCCTGCCCGCTCGTTTCGTCAGTTGG
637 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** * * * ** *
19136494 CTGAGGCATATAGAGTTCATTCCTAGTCTAAGATCGGACCGGATTGAGGGTTACGGCAGCAGGAT
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
*** * * * * * * *
19136559 CGGCAGCATATAGAGGGGGACCCGACTGATCCCAGACTTGCACATCCTGCCCTTTTGGTCGGCTG
767 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
19136624 AGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19136684 GCATACGGAGTTCATTCTCAGTCTAAGATCGAACCGGATCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* **
19136749 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCACCGCAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCAT-----C-GCA-C--CGGAGA
* *
19136814 ACCTGACCGGCGGCATTGGGGTTCCGGCAATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
121 ACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
19136879 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
186 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * * * * *
19136944 CCCCCTTAAAAAGCACTTAAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTATGGAATG
251 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19137009 GGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
316 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
19137074 GCATGCCAACAAAAATACAAGGATCACATCTACCAAG-TTGGAGGCCAAGACTCCTTCCGAAAAA
381 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCC-AAAAA
* * ** * *
19137138 ATTTTAAAAAAATCCTGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAGCGAGTCGTCT
444 ATTTT-AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
19137203 TCCCACGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGACATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** * * *
19137268 ATTGGCACATAGAAATTTTAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
19137333 GCATCCCGTCTCTCTGGCCGACGTAGTG-CCTCC--CCGCCCGCCCGCTCGTTTCATCGGTTGGC
638 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** * * * * *
19137395 TGAGGCATACGGAGTTCATTCGTAGTCTAAGGTCAGATCAGACTGA-GGTTGCGGTAGTAGGATC
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * * *
19137459 AGCAGCACGTAGATGGGGACCCGACCAATCCCCGGCTTGCTCATCCCGCCCGTCTGGCCTGCTGA
768 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
19137524 GCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19137583 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
*
19137648 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAT--CACCGGAGAACCTGACTG
66 CTCGGGCATGTGCTGGTGC-GCATTTTTCTTCGTCGGGGCACCATCGCACCGGAGAACCTGACCG
* * * * *
19137711 GCGGCATTGGGGTTCCAGCGATCAGGGGG-CTGGGGGATATGCACACATGATGTGCGATGGGTGC
130 GCGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
19137775 TGCTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
* * * * * *
19137840 AGCGCATTTGAG-TGTCTAAAATGGTTTGTTGCTAGTAGTTGCTAGTAGTCATTAAAGTGTCTAA
260 AGAGCATTTGAGAT-T-TTACA-GG--T-TTGC-------TGCCAGTAGCCATTAAAGTGTCTGA
*
19137904 AATGGGGACACTTTTTTCAAATGGTCACAAAA-ATTGTACACTTCGAGTTTTTAGCTGAATTTTT
312 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * ** * * * * *
19137968 TTGTGCATGCCAAGAAACATACAAGGATCATGTGAACCAAGTTTGGGTCTAAAAATACTTTCGAA
377 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAA
* ** * *
19138033 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCAT
441 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
19138098 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTCACAAGCCATAAAAATG
506 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
19138163 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-ATCGATCCACAGCTT
571 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * ** * *
19138227 GCGCATCCTGTCTCTCTGGTCGGCGTAGCGCTCGCCCACCCGCCCTCCCGTTCGTTTCGTCGGTT
636 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGTCCGCCCGCCCGCTCGTTTCGTCGGTT
** * *
19138292 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGG
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * ** * * * *
19138357 ATCGGTAGCATGCAGAGGGGGACCCGGCTAATCCCCAACTTGCGCATCTCGCCCCTCTGGACGTC
765 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
19138422 TGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGCCATGCAGAGTTCATTCCTAGTGTAA
830 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19138484 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
*
19138549 CTCGGGCATGTGCTGGTGCTGCATTTTTGTTCGTCGGGGCACCATCG--CCGGAGAACCTGACCG
66 CTCGGGCATGTGCTGGTGC-GCATTTTTCTTCGTCGGGGCACCATCGCACCGGAGAACCTGACCG
* *
19138612 GCGGCATTGGGGTTCCGGCAATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
130 GCGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
19138677 TGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT-A
*
19138742 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
19138807 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
19138872 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTAAAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAA
* * *
19138937 AATCCCGAACCACAAAAAGTTTTGAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
453 AATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
19139002 CTTCATGTTAAGGCTTATGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGC
518 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
19139067 AGAAATATGAAGATGTGCCTAATCCCACATACCACCCTATCGATCCACGGCTTGCGCATCCTGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * **
19139132 TCTCTGGCCGACGTAGTGCCAGCCAGTACGCCCGCCCGCTCGTTTCATCAATTGGCTTAGGCATA
648 TCTCTGGCCGACGTAGTGCCCGCC-GTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** *
19139197 CGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTATGGCAGCAGGATCAGCAGCACG
712 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * *
19139262 CAGAGGGGGACCCGACCGATCCCCGGCTTGCTCATCCCGCCCCTCTAGCCGGCTGAACGCCCGCA
777 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* * *
19139327 CGCTCCTTTTGTGGGTTGACTTAGACATACGGAGTTCATTCCCAG--T--
842 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19139373 -C-TA---AG---------A-TC----A--G-ACCGGACTGAGGGTTGCGGCAGCACGTACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* *
19139416 CTCGGGCATGTGCTGGTGTCGCATTTTCCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGG
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCG-C--A-C--CG--G-AGA
* * *
19139481 ACCTGACCGGCGGTATTGGGGTTCC-GATGATCGGGGTGGCCAGGGGGGTGTGCGCACATGATGT
121 ACCTGACCGGCGGCATTGGGGTTCCAG-CGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGT
*
19139545 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
19139610 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19139675 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19139740 GTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAA
379 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
**
19139805 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
443 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * * *
19139870 TCCCATGAAACTTTATGTGAAGGCTTAAGGGACCATTGTATGATTTTGCAAGGCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19139935 TTTGGCATGCAGAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCAATCCACGGCTTGC
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * * *
19139999 GCATCCCATCCCTCTGGCCGGCGTGGCGCTCGCCCGTCCGCCCGTCCGTTCGTTTCGTCTGTTGG
638 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** * ** * * * * *
19140064 CTTAGGCATATGGAGTTTGTTCCCTGTC-AACGATTGGACCGGACCGAGGGTTACAGTAACAGGA
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAA-GATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * * * * *
19140128 TCGGCAGCATGCAGAGGAGGATCCTATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGTT
766 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
19140193 GAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
831 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19140254 GCATACAGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGTGGCAGCACATGCTGG
* *
19140318 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG--TCGGAGAACCTGACC
65 GCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCGCACCGGAGAACCTGACC
* ** * *
19140381 GGCGACATTTAGGTTCCAACGATCGGGAGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
129 GGCGGCATTGGGGTTCCAGCGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
19140446 GCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
*
19140511 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
19140576 TTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACG
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
19140641 AACATAATTACAGGGATCATGTCTACCAA-TTTGGGGCCAAAACTCCTGCCAACAAAATTTTAAA
388 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA-AAAATTTTAAA
** *
19140705 AAATCTTGAACCGCAAAAA----T-----T-GTGAAAAATAGAAAACGAGTCGTCTTGCCACGAA
452 AAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
19140760 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAG-CATAAAAATGGCAATGGCATG
517 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
19140824 CAGAAATATGGAGATGTGCCTACACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCGT
582 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
19140889 CTCTCTGGCTGGCGTAGTGCCCACCCGCCCGCCAG-CCGACTTGTTAT-GTCGGTTGGCTTAGGC
647 CTCTCTGGCCGACGTAGTGCCC-GCCGTCCGCCCGCCCG-CTCGTT-TCGTCGGTTGGCTTAGGC
* * * * * *
19140952 ATACGGAGTTCAGTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCAGCAGTAGGATCAGCAGC
709 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * * *
19141017 ACACAGATGGGGACCTGACCAATCCCCGGCTTGCGCATCCCGCCCGTCTGGCCTGCTGAGCGCCC
774 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* *
19141082 GCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
839 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19141135 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * *
19141200 CTCGGGCATGTGTTGGTGCTGCATTTTCCTTTGCCGGGGCACCATCG--CCGGAGAACCTGACTG
66 CTCGGGCATGTGCTGGTGC-GCATTTTTCTTCGTCGGGGCACCATCGCACCGGAGAACCTGACCG
* * *
19141263 GCGGCATTGGGGTTCCAGCGATCAGGGGGG-C-TGGGGGTGTGCACACATGATGTGCGATGGGGG
130 GCGGCATTGGGGTTCCAGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
19141326 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTTAAGAACTCACA-CTCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* * * * * *
19141390 AAGCGCATTTGAGATTTTACAGGTTCGTTTCTAGTAGCCATTAAAGTGTCCGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
19141455 TCTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * ** *
19141520 ACAAAAATAAAAGGATCACGTCTACCGAGTTTGGGACCAAAACTCATTTGGAAAAAATTTTGAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCCAAAAAATTTTAAAA
* ** * * *
19141585 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTTGTCCTGCCATGAAA
453 AATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
19141650 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGT
518 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
19141715 AGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTT
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* ** * * * *
19141780 TCTCTGGCCGACGTAGTGCCCG-C--CCACCTTCTCGTTCGTTTCTTCAGTTGGCTTAGGCATAC
648 TCTCTGGCCGACGTAGTGCCCGCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
19141842 GGATTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
713 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * * * *
19141907 AGAGGGGGACCTGACCGATCCCCGACTTGCGCAACCCGCCTCTCTGCCCGGCTAAGCGCCCGCAC
778 AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * *
19141972 GTTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
843 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19142021 GCATATGGAGTTCATTCCTAGTGTAAGATC-AGACCAGACCGAGGGTTGTGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGTGGCAGCACATGCTGG
* * ** ** *
19142085 GTTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCAAGGCACCATCGTCGGAGCATCACCGGGG
65 GCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCA---TC---G---CACCGGAG
* * * * *
19142150 AACTTGACCGACAGCATTGGGGTTTCAGCGATCGGATGGGCCGGGGGGGTGTGCGCACATGATGT
120 AACCTGACCGGCGGCATTGGGGTTCCAGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGT
* *
19142215 GCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
19142280 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19142345 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTGGCTGAATTTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19142410 ATGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCTTTCTAAAAA
379 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAA
** *
19142474 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAA-CTGTGAAAAATAGAAAACGAGTCATC
443 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATC-GTGAAAAATAGAAAACGAGTCGTC
* * * * * *
19142538 TTGCCACGAAATTTCACGTGAA-GCTTAAGGGACCATGGTATGAAATTACAAGCAATTAAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19142602 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACAGCTTG
572 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19142667 CGCATCCTGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTTGTCGGTT
637 CGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCG-CCGTCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
19142731 GGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGGACTAGACCAAGGGTTGCGGCAGTA-
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGCGGCAGCAG
* * * *
19142795 GATCCGGCAGCATGCCAGA-GGGGACCCAACCGATCCCCGACTTGCGCATCTCGCCCCTCTGACC
764 GAT-CGGCAGCACG-CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
* * * * * *
19142859 AGTTGGGCATCCGTATGCTCGTTTCGTGGG--G-CTGTAGGCTATGACGGAGTTCATTCCCAG--
827 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACT-TAGGC-AT-ACGGAGTTCATTCCCAGTC
19142919 T--
889 TAA
* *
19142920 --ATA---A--TGATT--C-G----A-ATCG----GG-CCTAGGGTT-TGGCAGCACATTG-TGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACA-TGCTGG
* * ** *
19142963 CCTTGGGCATGTATTGGTGC-C-TCATTTC-TCGTCGGGGCACCATCG--CCGGAGAACCTGGAC
65 GCTCGGGCATGTGCTGGTGCGCAT-TTTTCTTCGTCGGGGCACCATCGCACCGGAGAACCT-GAC
* * *
19143023 C--CAGC---GGGATT-----G---GGGGGGCC-GGGGGGTGTTCGCACATGATGTGCGATGGGT
128 CGGCGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
** * *
19143074 GCTGGTACTTGGCCCTTATATTCACCCTCTATCCCTCATCAAACCTCGAGAACTCACATCCCCC-
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCCT
* * *
19143138 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAATGTCTGAAATGGGGACA
257 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
19143203 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTTGCTGAATTGTTTTGTGCATGC
322 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
19143268 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
387 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAA
* * *
19143333 AAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCCTGA
451 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
19143398 AACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAG-CATCTAAAATGGCATTGGCA
516 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCA
* *
19143462 TGCAGAAATATGAAGATGTG-CTAAAACCCACCTACCACCCTATAGATCCACGGCTTCCGCATCC
580 TGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * * * *
19143526 TGTCTCTTTGGCCGGTGTAGCGCCCGCCCGTCCCCCCGCCCACTCGTTTAGTCGGTTGGCTTAGG
644 CGTCTCTCTGGCCGACGTAGTGCCCG-CCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
19143591 CAT-CGGAGTTAATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCAGTAGCAGGATTGGCAG
708 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
** * * *
19143655 CACGCCA-AAAGGGACCCGGACCGAT--CCGACTTGCGCATCCCGCCCCTATGGTCGGTTGAGCG
773 CACG-CAGAGGGGGACCC-GACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-
*
19143717 A-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
19143773 G
1 G
19143774 ATCAAACCAG
Statistics
Matches: 6176, Mismatches: 754, Indels: 369
0.85 0.10 0.05
Matches are distributed among these distances:
849 65 0.01
850 247 0.04
851 179 0.03
852 164 0.03
855 1 0.00
860 5 0.00
863 4 0.00
864 9 0.00
865 4 0.00
867 70 0.01
868 2 0.00
869 1 0.00
870 1 0.00
872 2 0.00
873 1 0.00
874 2 0.00
875 14 0.00
876 7 0.00
877 235 0.04
878 532 0.09
879 232 0.04
880 48 0.01
881 438 0.07
882 8 0.00
883 2 0.00
884 5 0.00
885 2 0.00
886 271 0.04
887 107 0.02
888 46 0.01
889 77 0.01
890 100 0.02
891 110 0.02
892 528 0.09
893 227 0.04
894 1 0.00
895 3 0.00
896 43 0.01
897 195 0.03
898 221 0.04
899 478 0.08
900 258 0.04
901 269 0.04
902 166 0.03
903 660 0.11
904 103 0.02
905 33 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCGCATTTTTCTTCGTCGGGGCACCATCGCACCGGAGAACCTGACCGG
CGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
GGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19137593 original size:26 final size:26
Alignment explanation
Indices: 19137557--19137609 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19137547 GTTGACTTAG
19137557 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19137583 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19137609 G
1 G
19137610 ATCGAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19140257 original size:26 final size:26
Alignment explanation
Indices: 19140228--19140280 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19140218 GTTGACTTAG
* *
19140228 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19140254 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19140280 G
1 G
19140281 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19141145 original size:26 final size:26
Alignment explanation
Indices: 19141109--19141161 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19141099 GTTGACTTAG
*
19141109 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19141135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19141161 G
1 G
19141162 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19142031 original size:26 final size:26
Alignment explanation
Indices: 19141995--19142047 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19141985 GTTGACTTAG
19141995 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
* *
19142021 GCATATGGAGTTCATTCCTAGTGTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
19142047 G
1 G
19142048 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:19145943 original size:26 final size:26
Alignment explanation
Indices: 19145905--19145957 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19145895 GTTGACTTAG
19145905 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
19145931 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19145957 G
1 G
19145958 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19147296 original size:735 final size:737
Alignment explanation
Indices: 19145831--19147356 Score: 2172
Period size: 735 Copynumber: 2.1 Consensus size: 737
19145821 GGGGACCCGG
* * * * * *
19145831 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT-GAGCAC-CC-GCACGCTCGTTTCGT
1 TCGATCCCCGGCTTGCGCATCCCGTCTCTCTGGCCGACTAGTGCACGCCTGCCCACTCGTTTCAT
* *
19145893 GGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGTGTTCATTCCCAGTCTAAG
66 CGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * *
19145958 ATCAGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTT
131 ATCAGACCAGACCGAGGGTTGCGGCAGCACATGCGGGGCTCGGGCATGTGCTGGTGCCTCATTTT
* * * * * * * * *
19146023 TCTTCGCTGGGGCACCATCGCCGGAGCATCGCCGGAGTACCTGACCGGCGGCATTGGGGTTCCGA
196 TCTTCGCTGGAGAACCATCGCCAGAGCATCACCAGAGAACCTGACAGACGACATTGGGGTTCCGA
* ** *
19146088 CGATAGGGGGGGCCGGAGGGGCTCTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTA
261 CGATAGAGGGGGCCGGAGGGGCTCTACGCACATGATGTGCGATGGGTGCCAGTACTTGGCCCTTA
*
19146153 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAACAGCATTTGAGATTT
326 TATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAACAGCATTTGAGATTT
* *
19146218 TACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACA
391 TACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATTGGGAAACTTTTTTCAAATGGTCACA
* * *
19146283 AAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
456 AAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAGAAAAGGATC
* * * * *
19146348 ACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAATCCCGAACTGCAAAA
521 ACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAA
* *
19146413 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTA
586 AGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTCGCCATGAAACTTCACATGAAGGCTTA
* * *
19146478 AGGGAATATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
651 AGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTG
**
19146543 CCTAAATTCACCTACCACCCTA
716 CCTAAACCCACCTACCACCCTA
* *
19146565 TCGATCCCCGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCTCGCCTGCCCACTCGTTTCA
1 TCGATCCCCGGCTTGCGCATCCCGTCTCTCTGGCCGAC-TAGTGCACGCCTGCCCACTCGTTTCA
* * *
19146630 TCGGTTGGCTTAGGCATGCGGAGTTCATTCCCACTCTAAGCATA-GAGAGTTCATTCCCAGTCTA
65 TCGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACG-GAGTTCATTCCCAGTCTA
* * * * *
19146694 AGATTAGACCAGATCGAGGGTTGCGGTAGCACATGCGGGGCTCGGGTATGTGCTGGTGTCGT-AT
129 AGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCGGGGCTCGGGCATGTGCTGGTG-CCTCAT
* *
19146758 TTTTCTTCG-TCGGAGAACCATCGTCAGAGCATCATCAGAGAACCTGACAGACGACATTGGGGTT
193 TTTTCTTCGCT-GGAGAACCATCGCCAGAGCATCACCAGAGAACCTGACAGACGACATTGGGGTT
* * * * * *
19146822 CCGACGATCGATGGGGCCGG-GGGGGTGTGCGCACATGATGTGTGATGGGTGCCAGTACTTGGCC
257 CCGACGATAGAGGGGGCCGGAGGGGCTCTACGCACATGATGTGCGATGGGTGCCAGTACTTGGCC
* ** * * **
19146886 CTTCTATTGGCTTCCTATCCCCCATCAAACCTCAAGAACTCACGCCCCCTTATAGTGCATTTGAG
322 CTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAACAGCATTTGAG
* * *
19146951 ATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTTAAA-TGGGAAACTTTTTTCAAATGGT
387 ATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATTGGGAAACTTTTTTCAAATGGT
*
19147015 CACAAAATCTTGTACACTTCGAGTTTTTAGC-GAAATTTTTTTATGCAT-CCAACAAAAAGAAAA
452 CACAAAATCTTGTACACTTCAAGTTTTTAGCTG-AATTTTTTTATGCATGCCAACAAAAAGAAAA
* * *
19147078 GGATCACATCTACCAAGTTTGGGGCTAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCAAACCG
516 GGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCG
* * * *
19147143 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATTAAATTTCACATGAAG
581 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTCGCCATGAAACTTCACATGAAG
* *
19147208 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAG
646 GCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAG
19147273 ATGTGCCTAAACCCACCTACCACCCTA
711 ATGTGCCTAAACCCACCTACCACCCTA
* * *
19147300 TCGATCCACGGCTTGCGCATCCCAGTCTCTCTGGCCGACGTAGTGCCCGTCTGCCCA
1 TCGATCCCCGGCTTGCGCATCCC-GTCTCTCTGGCCGAC-TAGTGCACGCCTGCCCA
19147357 TCCGCTCGCT
Statistics
Matches: 698, Mismatches: 85, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
734 35 0.05
735 238 0.34
736 98 0.14
737 136 0.19
738 189 0.27
739 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (737 bp):
TCGATCCCCGGCTTGCGCATCCCGTCTCTCTGGCCGACTAGTGCACGCCTGCCCACTCGTTTCAT
CGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGACCAGACCGAGGGTTGCGGCAGCACATGCGGGGCTCGGGCATGTGCTGGTGCCTCATTTT
TCTTCGCTGGAGAACCATCGCCAGAGCATCACCAGAGAACCTGACAGACGACATTGGGGTTCCGA
CGATAGAGGGGGCCGGAGGGGCTCTACGCACATGATGTGCGATGGGTGCCAGTACTTGGCCCTTA
TATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAACAGCATTTGAGATTT
TACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATTGGGAAACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAGAAAAGGATC
ACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAA
AGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTCGCCATGAAACTTCACATGAAGGCTTA
AGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTA
Found at i:19147559 original size:26 final size:26
Alignment explanation
Indices: 19147529--19147581 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19147519 GTTGACTTAT
*
19147529 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
19147555 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19147581 G
1 G
19147582 ATCGAGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19151906 original size:26 final size:26
Alignment explanation
Indices: 19151870--19151922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19151860 GTTGACTTAG
*
19151870 GCATACAGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19151896 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19151922 G
1 G
19151923 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19152790 original size:26 final size:26
Alignment explanation
Indices: 19152761--19152813 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19152751 GTTGACTTAG
* * *
19152761 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19152787 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19152813 G
1 G
19152814 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19153969 original size:60 final size:60
Alignment explanation
Indices: 19153855--19154487 Score: 828
Period size: 60 Copynumber: 10.7 Consensus size: 60
19153845 TGTAGGGAAA
* ** *
19153855 TTCAACTTTTCCCCAAAAATA--TTTTTTGAAAATTT-ATTTTTAAGGAAAATTGATATT
1 TTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
* *
19153912 TTCAACTTTTCCTCAAAAATATTTTTTTTTAAACTTTGATTTCCAAGGAAAATTGATACT
1 TTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
*** * *
19153972 TTCAACTTTTCCTCAAAAAT-CCCTTTTTGAAAATTT-ATTTCTAAGGAAAATTGATATT
1 TTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
* *
19154030 TTCAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTAATTTCCAAGGAAAATTGATACT
1 TTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
*** * * *
19154090 TTCAACTTTTCCTCAAAAATCCATTTTTCGAAAATTT-ATTTCTAAGGAAAATTAATACT
1 TTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
* *
19154149 TTCAACTTTTCCTTAAAAATATATTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
1 TTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
*
19154209 TTCAACTTTTCC-CTAAAAATAATTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
1 TTCAACTTTTCCTC-AAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
*
19154269 TTC-ACTTTTCCTC-AAAATATTTTTTTTGAAACTTTTGATTTCCAAGG-AAATTGATAC-
1 TTCAACTTTTCCTCAAAAATATTTTTTTTGAAA-ATTTGATTTCCAAGGAAAATTGATACT
* *
19154326 TTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTTGATTTCCTAGGAAAATTGATACT
1 TTCAACTTTTCCTCAAAAATATTTTTTTTGAAA-ATTTGATTTCCAAGGAAAATTGATACT
*** *
19154387 TTCAACTTTTCCTC-AAAAT-CCCTTTTTGAAAATTT-ATTTCTAAGGAAAATTGATA-T
1 TTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
* * *
19154443 TTCAACTTTTCCTTAAAATATTTTTTTTTTGAAAGTTTTGATTTC
1 TTCAACTTTTCCTCAAAA-ATATTTTTTTTGAAA-ATTTGATTTC
19154488 ATTTAAAGAA
Statistics
Matches: 509, Mismatches: 49, Indels: 32
0.86 0.08 0.05
Matches are distributed among these distances:
56 14 0.03
57 44 0.09
58 81 0.16
59 162 0.32
60 189 0.37
61 19 0.04
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (60 bp):
TTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
Found at i:19154164 original size:119 final size:118
Alignment explanation
Indices: 19153855--19154468 Score: 824
Period size: 118 Copynumber: 5.2 Consensus size: 118
19153845 TGTAGGGAAA
* * *
19153855 TTCAACTTTTCCCCAAAAAT-ATTTTTTGAAAATTTATTTTTAAGGAAAATTGATATTTTCAACT
1 TTCAACTTTTCCTCAAAAATCATTTTTTGAAAATTTATTTCTAAGGAAAATTGATACTTTCAACT
* * *
19153919 TTTCCTCAAAAATATTTTTTTTTAAACTTTGATTTCCAAGGAAAATTGATACT
66 TTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
** *
19153972 TTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAATTGATATTTTCAACT
1 TTCAACTTTTCCTCAAAAATCATTTTTTGAAAATTTATTTCTAAGGAAAATTGATACTTTCAACT
*
19154037 TTTCCTTAAAAATATTTTTTTTGAAAATTTAATTTCCAAGGAAAATTGATACT
66 TTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
* *
19154090 TTCAACTTTTCCTCAAAAATCCATTTTTCGAAAATTTATTTCTAAGGAAAATTAATACTTTCAAC
1 TTCAACTTTTCCTCAAAAAT-CATTTTTTGAAAATTTATTTCTAAGGAAAATTGATACTTTCAAC
*
19154155 TTTTCCTTAAAAATATATTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
65 TTTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
* *
19154209 TTCAACTTTTCC-CTAAAAATAATTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACTTTC-
1 TTCAACTTTTCCTC-AAAAATCA-TTTTTTGAAAATTT-ATTTCTAAGGAAAATTGATACTTTCA
* *
19154272 ACTTTTCC-TCAAAATATTTTTTTTGAAACTTTTGATTTCCAAGG-AAATTGATAC-
63 ACTTTTCCTTAAAAATATTTTTTTTGAAA-ATTTGATTTCCAAGGAAAATTGATACT
*
19154326 TTCAACTTTTCCTCAAAAAT-ATTTTTTTTGAAACTTTTGATTTCCT-AGGAAAATTGATACTTT
1 TTCAACTTTTCCTCAAAAATCA--TTTTTTGAAA-ATTT-ATTT-CTAAGGAAAATTGATACTTT
* *** *
19154389 CAACTTTTCC-TCAAAAT-CCCTTTTTGAAAATTT-ATTTCTAAGGAAAATTGATA-T
61 CAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
*
19154443 TTCAACTTTTCCT-TAAAAT-ATTTTTT
1 TTCAACTTTTCCTCAAAAATCATTTTTT
19154469 TTTTGAAAGT
Statistics
Matches: 454, Mismatches: 30, Indels: 29
0.88 0.06 0.06
Matches are distributed among these distances:
114 6 0.01
116 16 0.04
117 73 0.16
118 176 0.39
119 160 0.35
120 23 0.05
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.44
Consensus pattern (118 bp):
TTCAACTTTTCCTCAAAAATCATTTTTTGAAAATTTATTTCTAAGGAAAATTGATACTTTCAACT
TTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGATACT
Found at i:19154519 original size:13 final size:12
Alignment explanation
Indices: 19154491--19154533 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
19154481 TGATTTCATT
19154491 TAAAGAAAATAGAA
1 TAAA-AAAATA-AA
19154505 TAATAAAAATAAA
1 TAA-AAAAATAAA
*
19154518 TAAAAAAAAAAA
1 TAAAAAAATAAA
19154530 TAAA
1 TAAA
19154534 GATGAAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 12 0.44
13 5 0.19
14 9 0.33
15 1 0.04
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (12 bp):
TAAAAAAATAAA
Found at i:19155526 original size:28 final size:26
Alignment explanation
Indices: 19155467--19155534 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 26
19155457 TAATTAGAAC
*
19155467 AGATAAATAAAAAAAAGATATATTAT
1 AGATAAATAAAAAAAAGATATATAAT
19155493 AGGATAAATAAAATAACAA-ATATATAATT
1 A-GATAAATAAAA-AA-AAGATATATAA-T
19155522 AGATAAATAAAAA
1 AGATAAATAAAAA
19155535 TACAAAAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
26 1 0.03
27 12 0.32
28 20 0.54
29 4 0.11
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.25
Consensus pattern (26 bp):
AGATAAATAAAAAAAAGATATATAAT
Found at i:19155539 original size:28 final size:27
Alignment explanation
Indices: 19155467--19155579 Score: 82
Period size: 28 Copynumber: 4.3 Consensus size: 27
19155457 TAATTAGAAC
*
19155467 AGATAAATAAAAA-A-AAGATATATTAT
1 AGATAAATAAAAATACAA-ATATATAAT
19155493 AGGATAAAT-AAAATAACAAATATATAATT
1 A-GATAAATAAAAAT-ACAAATATATAA-T
19155522 AGATAAATAAAAATACAAA-A-ATAA-
1 AGATAAATAAAAATACAAATATATAAT
*
19155546 ATA-AAATATAAAATA-ATAATA-ATAAT
1 AGATAAATA-AAAATACA-AATATATAAT
*
19155572 AAATAAAT
1 AGATAAAT
19155580 TATAATATAA
Statistics
Matches: 73, Mismatches: 3, Indels: 21
0.75 0.03 0.22
Matches are distributed among these distances:
23 6 0.08
24 10 0.14
25 5 0.07
26 11 0.15
27 12 0.16
28 20 0.27
29 9 0.12
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (27 bp):
AGATAAATAAAAATACAAATATATAAT
Found at i:19155556 original size:7 final size:8
Alignment explanation
Indices: 19155539--19155596 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 8
19155529 TAAAAATACA
19155539 AAAATAAAT
1 AAAAT-AAT
19155548 AAAAT-AT
1 AAAATAAT
19155555 AAAATAAT
1 AAAATAAT
19155563 AATAATAAT
1 AA-AATAAT
19155572 -AAATAA-
1 AAAATAAT
**
19155578 ATTATAAT
1 AAAATAAT
*
19155586 ATAATAAT
1 AAAATAAT
19155594 AAA
1 AAA
19155597 TATATAACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
7 16 0.39
8 14 0.34
9 11 0.27
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (8 bp):
AAAATAAT
Found at i:19155583 original size:28 final size:28
Alignment explanation
Indices: 19155541--19155595 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
19155531 AAAATACAAA
19155541 AATAAATAAAATATAAAATAATAATAAT
1 AATAAATAAAATATAAAATAATAATAAT
* *
19155569 AATAAATAAATTATAATATAATAATAA
1 AATAAATAAAATATAAAATAATAATAA
19155596 ATATATAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (28 bp):
AATAAATAAAATATAAAATAATAATAAT
Found at i:19155609 original size:22 final size:22
Alignment explanation
Indices: 19155499--19155622 Score: 84
Period size: 22 Copynumber: 5.8 Consensus size: 22
19155489 TTATAGGATA
* *
19155499 AATAAAATAACAAATATATAATT
1 AATATAATAATAAATATATAA-T
*
19155522 AGATA-AATAA-AAATACA-AA-
1 A-ATATAATAATAAATATATAAT
*
19155541 AATA-AAT-A-AAATATAAAAT
1 AATATAATAATAAATATATAAT
* *
19155560 AATAATAATAATAAATAAATTAT
1 AAT-ATAATAATAAATATATAAT
19155583 AATATAATAATAAATATATAACT
1 AATATAATAATAAATATATAA-T
* *
19155606 -ATATAAAAATACATATA
1 AATATAATAATAAATATA
19155623 CATATTAACA
Statistics
Matches: 84, Mismatches: 9, Indels: 17
0.76 0.08 0.15
Matches are distributed among these distances:
17 7 0.08
18 8 0.10
19 4 0.05
20 1 0.01
21 5 0.06
22 38 0.45
23 18 0.21
24 3 0.04
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (22 bp):
AATATAATAATAAATATATAAT
Found at i:19155893 original size:10 final size:10
Alignment explanation
Indices: 19155878--19155908 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
19155868 GACATTGTCA
19155878 TTTTTTTGTT
1 TTTTTTTGTT
19155888 TTTTTTTGTT
1 TTTTTTTGTT
19155898 TTTTTTT-TT
1 TTTTTTTGTT
19155907 TT
1 TT
19155909 ACCAAAGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.19
10 17 0.81
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:19156094 original size:41 final size:41
Alignment explanation
Indices: 19155915--19156249 Score: 507
Period size: 41 Copynumber: 8.1 Consensus size: 41
19155905 TTTTACCAAA
* * * * *
19155915 GCTCTTCTAAACAGAGGCTCAAGGACTTTGAGAAACCTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-GTAAATT
19155958 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
19156000 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAA--AAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
19156038 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
19156079 GCTCCTCTAAGCAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
19156120 GCTCCTCTAAACAGAGGCACCATGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAGTAAATT
*
19156162 GCTCCTCTAAACAAAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
19156203 GCTCCTCTAAACAGAGGCAACA-GAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATT
19156244 GCTCCT
1 GCTCCT
19156250 TGACAATTAT
Statistics
Matches: 273, Mismatches: 13, Indels: 14
0.91 0.04 0.05
Matches are distributed among these distances:
38 35 0.13
39 3 0.01
40 4 0.01
41 127 0.47
42 74 0.27
43 28 0.10
44 2 0.01
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:19156134 original size:162 final size:166
Alignment explanation
Indices: 19155915--19156249 Score: 511
Period size: 162 Copynumber: 2.0 Consensus size: 166
19155905 TTTTACCAAA
* * *
19155915 GCTCTTCTAAACAGAGGCTCAAGGACTTTGAGAAACCTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAACCTAAATTGCTCCTCTAAACAGAGGCACCA
*
19155980 CGACTTTG-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTG-AAA-AAATTGCTC
66 CGACTTTGAG-AAAGTAAATTGCTCCTCTAAACAAAGGCACCACGACTTTGAAAAGAAATTGCTC
*
19156042 CTCTAAACAGAGGCACCACG-ACTTTGAAAAATAAATT
130 CTCTAAACAGAGGCAACA-GAACTTTGAAAAATAAATT
* * *
19156079 GCTCCTCTAAGCAGAGGCACCACGACTTTGA-AAA-GTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAACCTAAATTGCTCCTCTAAACAGAGGCACCA
*
19156142 TGACTTTGAGAAAGTAAATTGCTCCTCTAAACAAAGGCACCACGACTTTGAAAAGTAAATTGCTC
66 CGACTTTGAGAAAGTAAATTGCTCCTCTAAACAAAGGCACCACGACTTTGAAAAG-AAATTGCTC
*
19156207 CTCTAAACAGAGGCAACAGAACTTTGAAAAGTAAATT
130 CTCTAAACAGAGGCAACAGAACTTTGAAAAATAAATT
19156244 GCTCCT
1 GCTCCT
19156250 TGACAATTAT
Statistics
Matches: 156, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
162 74 0.47
163 7 0.04
164 27 0.17
165 48 0.31
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (166 bp):
GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAACCTAAATTGCTCCTCTAAACAGAGGCACCA
CGACTTTGAGAAAGTAAATTGCTCCTCTAAACAAAGGCACCACGACTTTGAAAAGAAATTGCTCC
TCTAAACAGAGGCAACAGAACTTTGAAAAATAAATT
Found at i:19156201 original size:124 final size:120
Alignment explanation
Indices: 19155915--19156249 Score: 501
Period size: 124 Copynumber: 2.7 Consensus size: 120
19155905 TTTTACCAAA
* * * * *
19155915 GCTCTTCTAAACAGAGGCTCAAGGACTTTGAGAAACCTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-ATAAATTGCTCCTCTAAACAGAGGCACCA
19155980 CGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAATT
64 CGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAATT
*
19156038 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAGCAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
*
19156103 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGACTTTGAGAAAGTAAATT
66 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTT--GAAA--AAATT
* * *
19156162 GCTCCTCTAAACAAAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACA-G
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
19156226 AACTTTGAAAAGTAAATTGCTCCT
66 -ACTTTGAAAAGTAAATTGCTCCT
19156250 TGACAATTAT
Statistics
Matches: 196, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
120 40 0.20
121 34 0.17
122 7 0.04
123 28 0.14
124 87 0.44
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (120 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAATT
Found at i:19157525 original size:16 final size:14
Alignment explanation
Indices: 19157493--19157535 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 14
19157483 AATTTGAATA
19157493 TCTTTTTTTCATTTTT
1 TCTTTTTTT--TTTTT
19157509 TCATTTCTTTTTTTTT
1 TC-TTT-TTTTTTTTT
19157525 TCTTTTTTTTT
1 TCTTTTTTTTT
19157536 CATCATCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.24
15 3 0.12
16 9 0.36
17 3 0.12
18 4 0.16
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.84
Consensus pattern (14 bp):
TCTTTTTTTTTTTT
Found at i:19157532 original size:11 final size:11
Alignment explanation
Indices: 19157495--19157535 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
19157485 TTTGAATATC
19157495 TTTTTTTCATTT
1 TTTTTTTC-TTT
*
19157507 TTTCATTTCTTT
1 TTT-TTTTCTTT
19157519 TTTTTTTCTTT
1 TTTTTTTCTTT
19157530 TTTTTT
1 TTTTTT
19157536 CATCATCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
11 13 0.50
12 9 0.35
13 4 0.15
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:19160912 original size:119 final size:119
Alignment explanation
Indices: 19160723--19161301 Score: 886
Period size: 119 Copynumber: 4.9 Consensus size: 119
19160713 TTTTGTGTAG
* * **
19160723 GGAAAACTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTGAAAATTTATGTT-TAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTAT-TTCTAAGGAAAA
*
19160786 TTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTTTGATTTCCAA
65 TTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAAATTTGATTTCCAA
19160841 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
*
19160906 TGATATTTTCAACTTTTCCT--TAAA-ATTTTTTTTTGAAAATTTGATTTCCAA
66 TGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAAATTTGATTTCCAA
* * *
19160957 GGAAAATTGATGCTTTCAACTTTTCCTCAAAAATCCATTTTTCAAAAATTTATTTCTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTT-GAAAATTTATTTCTAAGGAAAA
* *
19161022 TTGATACTTTCAACTTTTCCTTAAAAATA-TTTTTTTTGAAAATTTGATTTCCAA
65 TTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAAATTTGATTTCCAA
*** *
19161076 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAAT-CCCTTTTTGAAAATTT-ATTTCTAAGGAA
* * *
19161140 AATTGATACTTTCAACTTTTTCTCAAAAATA-TTTTTTTTGAAACTTTGATTTCCAA
63 AATTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAAATTTGATTTCCAA
19161196 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
*
19161261 TGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTTGAAA
66 TGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAA
19161302 GTTTTAATTT
Statistics
Matches: 423, Mismatches: 27, Indels: 21
0.90 0.06 0.04
Matches are distributed among these distances:
116 66 0.16
117 44 0.10
118 74 0.17
119 136 0.32
120 102 0.24
121 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.44
Consensus pattern (119 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
TGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAAATTTGATTTCCAA
Found at i:19161087 original size:60 final size:60
Alignment explanation
Indices: 19160723--19161301 Score: 795
Period size: 60 Copynumber: 9.8 Consensus size: 60
19160713 TTTTGTGTAG
* * *
19160723 GGAAAACTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGAAAATTT-ATGTT-TAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGAT-TTCCAA
* *
19160780 GGAAAATTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTTGAAAATTTGATTTCCAA
*** *
19160841 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-CCCTTTTTGAAAATTT-ATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
* *
19160899 GGAAAATTGATATTTTCAACTTTTCCT-TAAAAT-TTTTTTTTGAAAATTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
* *** ** *
19160957 GGAAAATTGATGCTTTCAACTTTTCCTCAAAAATCCATTTTTCAAAAATTT-ATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
*
19161016 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
19161076 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTGAAAATTTGATTTCCAA
* *
19161136 GGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
*** *
19161196 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-CCCTTTTTGAAAATTT-ATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
* *
19161254 GGAAAATTGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTTGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTTGAAA
19161302 GTTTTAATTT
Statistics
Matches: 462, Mismatches: 47, Indels: 23
0.87 0.09 0.04
Matches are distributed among these distances:
57 50 0.11
58 104 0.23
59 80 0.17
60 190 0.41
61 38 0.08
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.44
Consensus pattern (60 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
Found at i:19161342 original size:17 final size:16
Alignment explanation
Indices: 19161317--19161363 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 16
19161307 AATTTTCATT
*
19161317 TAAAGAAAATAGAATAA
1 TAAAAAAAATA-AATAA
19161334 TAAAAAAAATAAATAA
1 TAAAAAAAATAAATAA
*
19161350 -AAATAAAA-AAATAA
1 TAAAAAAAATAAATAA
19161364 AGAAAAGTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 6 0.21
15 7 0.25
16 5 0.18
17 10 0.36
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (16 bp):
TAAAAAAAATAAATAA
Found at i:19161952 original size:31 final size:31
Alignment explanation
Indices: 19161896--19161963 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
19161886 ACTGGGCAGG
* ** * **
19161896 TCACCGAAAACTTCAAGTTTTGTCAAAATTT
1 TCACCGAAAAATTCAAACTTCGTCAAAAAAT
19161927 TCACCGAAAAATTCAAACTTCGTCAAAAAAT
1 TCACCGAAAAATTCAAACTTCGTCAAAAAAT
19161958 TCACCG
1 TCACCG
19161964 GAATCTGGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.40, C:0.24, G:0.09, T:0.28
Consensus pattern (31 bp):
TCACCGAAAAATTCAAACTTCGTCAAAAAAT
Found at i:19162391 original size:28 final size:27
Alignment explanation
Indices: 19162331--19162396 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
19162321 TAATTAGAAC
*
19162331 AGATAAATAAAAAAAAAGATATATTAT
1 AGATAAATAAAAAAAAAGATATATAAT
* *
19162358 AGGATAAATAAAATAACAGATATATAATT
1 A-GATAAATAAAAAAAAAGATATATAA-T
19162387 AGAT-AATAAA
1 AGATAAATAAA
19162397 TATACAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 7 0.21
28 25 0.74
29 2 0.06
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.26
Consensus pattern (27 bp):
AGATAAATAAAAAAAAAGATATATAAT
Found at i:19162420 original size:25 final size:23
Alignment explanation
Indices: 19162392--19162480 Score: 74
Period size: 25 Copynumber: 3.7 Consensus size: 23
19162382 TAATTAGATA
19162392 ATAAATATACAAAAATAAATAAAAT
1 ATAAATATA-AAAAAT-AATAAAAT
* *
19162417 ATAAA-AT-AATAATAATAAAAA
1 ATAAATATAAAAAATAATAAAAT
*
19162438 ATAAATTATAATATAATAATAAATAT
1 ATAAA-TATAA-AAAATAATAAA-AT
*
19162464 ATAACTATATAAAAATA
1 ATAAATATA-AAAAATA
19162481 CATATACATA
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
21 12 0.23
22 5 0.09
23 2 0.04
24 3 0.06
25 25 0.47
26 6 0.11
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (23 bp):
ATAAATATAAAAAATAATAAAAT
Found at i:19162535 original size:22 final size:21
Alignment explanation
Indices: 19162409--19162536 Score: 71
Period size: 22 Copynumber: 6.3 Consensus size: 21
19162399 TACAAAAATA
*
19162409 AATAAAATATAAAATAATAAT
1 AATAAAATATAATATAATAAT
* *
19162430 AATAAAAAATAA-ATTATAAT
1 AATAAAATATAATATAATAAT
19162450 -ATAATAATA-AATAT-ATAACT
1 AATAA-AATATAATATAATAA-T
*
19162470 ATATAAAA-ATACATATACATATT
1 A-ATAAAATATA-ATATA-ATAAT
*
19162493 AACAAAA-A-AGA-A-AA-AA-
1 AATAAAATATA-ATATAATAAT
19162509 AATAAAATATACATATAATAAT
1 AATAAAATATA-ATATAATAAT
19162531 AATAAA
1 AATAAA
19162537 TAATAAAACA
Statistics
Matches: 83, Mismatches: 9, Indels: 29
0.69 0.07 0.24
Matches are distributed among these distances:
16 6 0.07
17 2 0.02
18 3 0.04
19 12 0.14
20 17 0.20
21 18 0.22
22 20 0.24
23 2 0.02
24 3 0.04
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (21 bp):
AATAAAATATAATATAATAAT
Found at i:19162552 original size:38 final size:39
Alignment explanation
Indices: 19162450--19162555 Score: 110
Period size: 38 Copynumber: 2.8 Consensus size: 39
19162440 AAATTATAAT
* *
19162450 ATAATAATAAAT-ATATAACTATATAAAA-ATACATATAC
1 ATAATAATAAATAATAAAAC-AAATAAAATATACATATAC
* * * * *
19162488 ATATTAACAAAAAAGAAAAAAAATAAAATATACATATA-
1 ATAATAATAAATAATAAAACAAATAAAATATACATATAC
*
19162526 ATAATAATAAATAATAAAACACATAAAATA
1 ATAATAATAAATAATAAAACAAATAAAATA
19162556 CAAAAGAAAA
Statistics
Matches: 53, Mismatches: 13, Indels: 4
0.76 0.19 0.06
Matches are distributed among these distances:
38 40 0.75
39 13 0.25
ACGTcount: A:0.67, C:0.07, G:0.01, T:0.25
Consensus pattern (39 bp):
ATAATAATAAATAATAAAACAAATAAAATATACATATAC
Found at i:19162587 original size:22 final size:22
Alignment explanation
Indices: 19162557--19162606 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
19162547 CATAAAATAC
* *
19162557 AAAAGAAAAGAAAGAAAGAAAA
1 AAAAAAAAAGAAAAAAAGAAAA
* *
19162579 AAAAAAAAATAAAAAAAGAGAA
1 AAAAAAAAAGAAAAAAAGAAAA
19162601 AAAAAA
1 AAAAAA
19162607 TAATACAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (22 bp):
AAAAAAAAAGAAAAAAAGAAAA
Found at i:19162605 original size:13 final size:12
Alignment explanation
Indices: 19162557--19162606 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
19162547 CATAAAATAC
19162557 AAAAGAAAAGAAA
1 AAAAGAAAA-AAA
*
19162570 GAAAGAAAAAAA
1 AAAAGAAAAAAA
19162582 AAAA-AATAAAAA
1 AAAAGAA-AAAAA
*
19162594 AAGAGAAAAAAA
1 AAAAGAAAAAAA
19162606 A
1 A
19162607 TAATACAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
11 2 0.06
12 20 0.62
13 10 0.31
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (12 bp):
AAAAGAAAAAAA
Found at i:19162622 original size:20 final size:18
Alignment explanation
Indices: 19162557--19162609 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
19162547 CATAAAATAC
* *
19162557 AAAAGAAAAGAAAGA-AAG
1 AAAAGAAAA-AAAAATAAA
19162575 AAAA-AAAAAAAAATAAA
1 AAAAGAAAAAAAAATAAA
19162592 AAAAGAGAAAAAAAATAA
1 AAAAGA-AAAAAAAATAA
19162610 TACAAAGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 4 0.13
17 10 0.33
18 5 0.17
19 11 0.37
ACGTcount: A:0.85, C:0.00, G:0.11, T:0.04
Consensus pattern (18 bp):
AAAAGAAAAAAAAATAAA
Found at i:19162668 original size:20 final size:21
Alignment explanation
Indices: 19162643--19162681 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
19162633 CTTACCCATT
19162643 TGGGCCAGG-CCCAATTGATC
1 TGGGCCAGGACCCAATTGATC
*
19162663 TGGGCCTGGACCCAATTGA
1 TGGGCCAGGACCCAATTGA
19162682 GTGTCTACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.21
Consensus pattern (21 bp):
TGGGCCAGGACCCAATTGATC
Found at i:19162987 original size:26 final size:26
Alignment explanation
Indices: 19162957--19163009 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19162947 GTTGACTTAG
*
19162957 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
19162983 GCATACGGAATTGATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19163009 G
1 G
19163010 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:19163897 original size:26 final size:26
Alignment explanation
Indices: 19163854--19163906 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19163844 GTTGACTTAG
* **
19163854 GCATACGGAGTTTATTCCTGGTCTAA
1 GCATACGAAGTTTATTCCCAGTCTAA
19163880 GCATACGAAGTTCT-TTCCCAGTCTAA
1 GCATACGAAGTT-TATTCCCAGTCTAA
19163906 G
1 G
19163907 ATTAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTTATTCCCAGTCTAA
Found at i:19164875 original size:891 final size:888
Alignment explanation
Indices: 19162691--19165444 Score: 3872
Period size: 891 Copynumber: 3.1 Consensus size: 888
19162681 AGTGTCTACA
* *
19162691 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAGCCCGTCTCTTTGGCCGGCGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTCTGGCCGGCGT
*
19162756 AGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
66 AGTGCCCGCCCG-CT---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTC
** * * * *
19162821 TAAGATCAGACCGGATCGAGTGTTGCGGCAGCAGGATCGGCAACATACGGAGGAGGACCTGGTTG
127 TAAGATCAGACCGGATCGAGTGTTGCGGCAGCAGGATCGGCAACACGCTGAGGGGGACCCGATTG
* * *
19162886 ATCCCCGGCTTGTGCATCCCGCCCCTCTGGCC-GACTGAGCGCCCGCACGCTCGTTTCATGGGTT
192 ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
19162950 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTGATTCCTAGTCTAAGATCAG
256 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCTAGTCTAAGATCAG
* * ** *
19163015 ACCGGACCGAGGGTTGCGCCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCACTTTTTTCTTC
320 ACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGC-ATTTTCTTC
** * * * * *
19163079 GTCGGGGCACCATCACCGGAGCAGCGTCGGAGATCCTGACCGGCGGCATTGGGGTTCCAACGATC
384 GTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCAG-CCGGCGGCATTGGGGTTTCGACGATC
* * * * *
19163144 GGGGGGGCGGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGC
448 AGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
** *
19163209 CCCCTATCCCTCATCAAACCTCGAGAACTTGCACCCCTTAAAAAGCATTTGAGATTTTACAGGTT
513 CCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
19163274 TGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
578 TGCTGCCAGTAGCCATTAAAGTG-TCTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
19163339 TACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCCCGTCTAC
642 TACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTAC
* * * *
19163404 CAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACTGTAAAAAGTTTCAA
706 CAAGTTTGGGGCCAAAACTCCTT-CAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAA
* * *
19163469 AAATCGTGAGAAATAGAAAACGAGTCGGCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCA
770 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
19163534 TTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCTGAAATATGAAGAT
835 TTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCTGAAATATGAAGAT
* *
19163588 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTTTGGCCGGTGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTCTGGCCGGCGT
*
19163653 AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTC
66 AGT----GCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTC
* * * * *
19163718 TAAGATCAGACCAGATTGAGTGTTGCGGTAGTAGGATCAGCAACACG-TAGAGGGGGACCCGATT
127 TAAGATCAGACCGGATCGAGTGTTGCGGCAGCAGGATCGGCAACACGCT-GAGGGGGACCCGATT
* * *
19163782 GATCCCCGGCTAGCGCATCCTGCCCCTTTGGCCAGCTGAGCGCCCACACGCTCGTTTCGTGGGTT
191 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* ** * * *
19163847 GACTTAGGCATACGGAGTTTATTCCTGGTCTAAGCATACGAAGTTCTTTCCCAGTCTAAGATTAG
256 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCTAGTCTAAGATCAG
* * *
19163912 ACTGGACCGAAGGTTGCGGCAGCACGTGCTGGGCTCGGGCATGTGCTGGTG-TCGTATTTTCTTC
320 ACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCATTTTCTTC
* *
19163976 GTCGGGGCACCATCGTCGTAGCATCGTCGGAGAACCAAGCCGGCGGTATTGGGGTTTCGACGATC
384 GTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC-AGCCGGCGGCATTGGGGTTTCGACGATC
*
19164041 AGAGGGGCCGGGGGGGTTTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
448 AG-GGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
19164106 -CCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGG
512 CCCCCTATCCCTCATCAAACCTCGAGAACTAACACC-CCTTAAAGAGCATTTGAGATTTTACAGG
19164170 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
576 TTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
19164235 TGTACACTTTGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAATACAAGGATAACATCTA
640 TGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAATACAAGGATCACGTCTA
19164300 -CAAGTTTGGGGCCAAAAC-CACTTCAAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
705 CCAAGTTTGGGGCCAAAACTC-CTTC-AAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
*
19164363 AAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
768 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
19164428 CATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCTGAAATATGAAGAT
833 CATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCTGAAATATGAAGAT
* * *
19164484 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCG-CTCTCTGGCCGACGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTCTGGCCGGCGT
* * * *
19164548 AGTGCCCGCCCGCTAGTTCGTTTCGTCGGTTGCCTTAGGCGTACGGAGTTCATTCCCATTCTAAG
66 AGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAG
* * * * *
19164613 ATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCC
131 ATCAGACCGGATCGAGTGTTGCGGCAGCAGGATCGGCAACACGCTGAGGGGGACCCGATTGATCC
* * * * *
19164678 CCGGCTTGCGCATCCTGCCCCACTGTCCAGTTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTT
196 CCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
19164743 AGGCATACGGACTTCATTCCCAGTCTAAGCTTACAGAGTTCATTCCTAGTCTAAGATCGGACTAG
261 AGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCTAGTCTAAGATCAGACTGG
* * **
19164808 A-CGAGGGTTACGGCAGCACATGGCTGGGCTCGGGCATGAGCTGGTGCTGCATTTTCTTCACCGG
325 ACCGAGGGTTGCGGCAGCACAT-GCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTCTTCGTCGG
* * * * * *
19164872 GGCACCATCGTTGGAGCATC-ACTGGAGAACCTTA-CCGACGACATTAGGGTTTTGACGATCAGG
389 GGCACCATCGTCGGAGCATCGTC-GGAGAACC--AGCCGGCGGCATTGGGGTTTCGACGATCAGG
* * * * * * * *
19164935 GGGCC-GAGGGGTGTGCA-ACCTGATGTTGCCATTGATGCTAGTACTTGGCCATTATAATGGCCC
451 GGGCCGGGGGGGTGTGCACACATGATG-TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
19164998 CCTATCCCTCATCAAACCTCGAGAACAAACACCTGCTTAGAAAGAGCATTTGAGATTTTACAGGT
515 CCTATCCCTCATCAAACCTCGAGAACTAACACC-CCTT--AAAGAGCATTTGAGATTTTACAGGT
* * * * * *
19165063 TGGCTGCCAGTAGCCATTAAAGTGCCTGAAT-GGGACAATTTTTTGAAATGGTCACAGAATCTTG
577 TTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
19165127 TACACTTCGAG-TTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTA
642 TACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCC--AACAAAATACAAGGATCACGTCTA
*
19165191 CCAAG-TTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTC
705 CCAAGTTTGGGGCCAAAACTCC-TTCAAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTC
* *
19165254 AAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
768 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
19165319 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATGAAGAT
833 CATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGC-T-GAAATATGAAGAT
* *
19165375 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTATCTGGCCGGCGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTCTGGCCGGCGT
19165440 AGTGC
66 AGTGC
19165445 TTGCCCTCCT
Statistics
Matches: 1667, Mismatches: 156, Indels: 73
0.88 0.08 0.04
Matches are distributed among these distances:
888 7 0.00
889 64 0.04
890 103 0.06
891 539 0.32
892 80 0.05
895 17 0.01
896 220 0.13
897 424 0.25
898 203 0.12
900 1 0.00
901 9 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (888 bp):
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTCTGGCCGGCGT
AGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAG
ATCAGACCGGATCGAGTGTTGCGGCAGCAGGATCGGCAACACGCTGAGGGGGACCCGATTGATCC
CCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCTAGTCTAAGATCAGACTGGA
CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTCTTCGTCGGGG
CACCATCGTCGGAGCATCGTCGGAGAACCAGCCGGCGGCATTGGGGTTTCGACGATCAGGGGGCC
GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTAACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATT
TACAAGCCATAAAAATGGCATTGGCATGCTGAAATATGAAGAT
Found at i:19166391 original size:26 final size:26
Alignment explanation
Indices: 19166348--19166400 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19166338 GTTGACTTAG
* **
19166348 GCATACGGAGTTTATTCCTGGTCTAA
1 GCATACGAAGTTTATTCCCAGTCTAA
19166374 GCATACGAAGTTCT-TTCCCAGTCTAA
1 GCATACGAAGTT-TATTCCCAGTCTAA
19166400 G
1 G
19166401 ATTAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTTATTCCCAGTCTAA
Found at i:19168888 original size:26 final size:26
Alignment explanation
Indices: 19168845--19168897 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19168835 GTTGACTTAG
* **
19168845 GCATACGGAGTTTATTCCTGGTCTAA
1 GCATACGAAGTTTATTCCCAGTCTAA
19168871 GCATACGAAGTTCT-TTCCCAGTCTAA
1 GCATACGAAGTT-TATTCCCAGTCTAA
19168897 G
1 G
19168898 ATTAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTTATTCCCAGTCTAA
Found at i:19169829 original size:888 final size:893
Alignment explanation
Indices: 19168033--19170436 Score: 3081
Period size: 888 Copynumber: 2.7 Consensus size: 893
19168023 GAACCGGTTG
* ** *
19168033 GCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATAGGGGCACCATCACCGGAGCATCGC
1 GCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGA
* * * * * ** *
19168098 CGAAGAACCTGACCTGCGACATTGTGGTTCCGACGATTGGGGGGGTCGGGGGGGGTGTGCGCACA
66 CGGAGAACCAG-CCGGCGACATTGGGGTTTCGACGATCAGGGGGG-CCGGGGGGGTGTGCGCACA
19168163 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
129 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
** * * *
19168228 AACTTGCACCCCCTTAAAAAGCATTTGAGA-TTTACAGG-TTGTTGCCAGTAGCCATT-AAGTGT
194 AACTAACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
19168290 -TCGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATTCTT-TACACTTCGAGTTTTTTAGACT
259 CT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAA-TCTTGTACACTTCGAG-TTTTTAG-CT
* *
19168352 GAATGTTTGCTT-T-CATGCCAAC-AAAATACAAGGATCCTAT-TACGAAGTTTGCGCCAAAACT
320 GAAT-TTT--TTGTGCATGCCAACAAAAATACAAGGATAC-ATCTAC-AAGTTTGGGCCAAAACT
* * * *
19168413 CCTTCCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAAGTTTC-AAAATCGTTGAGAATAGAA
380 CCTTCAGAAAAAATTTTAAAAAATCCTGAACCGT-AAAAAGTTTCAAAAATCG-TGAAAATAGAA
* *
19168477 AACGAGTCGGCTTGGCATGCAAAC-TCAC-TG-AGGCTTAAGGCGACCATTGTATGAATTTACAA
443 AACGAGTCGTCTTGCCATG-AAACTTCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAA
* *
19168539 GCCAT-AAAAT-GCATTTGCATGCAGAAATATGAA-ATGTGCCTAAACCCA-CTA-CACCCTATC
506 GCCATAAAAATGGCATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
19168599 GATCCACGGCTTGCGCAGCCCGTCTCTTTGGCCGGTGTATGCCCGGCCCGCCCGCCCGCTCGTTT
571 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-G---TGCCCGCCCGCCCGCTCGTTT
*
19168664 CGTTCGGTATTGGCCTTAGGCATACGGAGTTCATATCACCATTCTAAGCATCAGACCAGATTTGA
632 CGTTCGG-ATTGGCCTTAGGCATACGGAGTTCATATCACCATTCTAAGCATCAGACCAGA-TCGA
* * * *
19168729 GTGTGCGTGGTAGTAGGATCAGCAACACGTAGAGGGACCCGATTGATCCCCGGCTAGCGCATCCT
695 GGGTGC--GGCAGCAGGATCAGCAACACGTAGAGGGACCCGATCGATCCCCGGCTAGCGCATCCT
** * * *
19168794 GCCCCTTTGGCCAGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTA
758 GCCCCACTGGCCAGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCA
** * * ** *
19168859 TTCCTGGTCTAAGCATACGAAGTTCTTTCCCAGTCTAAGATTAGACTGGACCGAAGGTTGCGGCA
823 TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCA
*
19168924 GCACGT
888 GCACAT
* *
19168930 GCTGGGCTCGGGCATGTGCTGGTG-TCGTA-TTTTCTTCGTCGGGGCACCATCGTCGTAGCATCG
1 GCTGGGCTCGGGCATGTGCTGGTGCT-GTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCG
* ** * * *
19168993 TCGGAGAACCAAGCCGGCGGTATTGGGGTTTCGACGATCAGAGGGGCCGGGGGGGTTTGCACACA
65 ACGGAGAACC-AGCCGGCGACATTGGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACA
19169058 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
129 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
19169123 AACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
194 AACTAACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
19169188 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
259 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
19169253 TATTTTGTGCATGCCAACAAAAATACAAGGATAACATCTACAAGTTTGGGCCAAAAC-CACTTCA
324 T-TTTTGTGCATGCCAACAAAAATACAAGGAT-ACATCTACAAGTTTGGGCCAAAACTC-CTTCA
*
19169317 GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGTGAAAATAGAAAACGAGTC
386 GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAATAGAAAACGAGTC
*
19169382 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAA
451 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19169447 TGGCATTGGCATGCTGAAATATGAAGATGTGGCCTAAACCCACCTACCACCCTATCAATCCACGG
516 TGGCATTGGCATGCTGAAATATGAAGATGT-GCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
19169512 CTTGTGCATCCCG-CTCTCTGGCCGACGTAGTGCCCGCCCGCTCG-TCGTTTCG-TCGG-TTGG-
580 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTTCGGATTGGC
* * *
19169572 CTTAGGCGTACGGAGTTCAT-TC-CCATTCTAAG-ATCGGACCGGA-CGAGGGTTGC-GCAGCAG
645 CTTAGGCATACGGAGTTCATATCACCATTCTAAGCATCAGACCAGATCGAGGG-TGCGGCAGCAG
* * * *
19169632 GATC-GCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCACTGTCCAG
709 GATCAGCAACACG-T-AGAGGGACCCGATCGATCCCCGGCTAGCGCATCCTGCCCCACTGGCCAG
* * * *
19169696 TTGAGCACGCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAGC
772 CTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAGC
* * * *
19169761 TTAC-AGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACAT
837 ATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGCACAT
* * * * *
19169818 GCTGGGCTCGGGCATGAGCTGGTACTGCATTTTTCTTCACCGGGGCACCATCGTTGGAGCATC-A
1 GCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGA
* * * *
19169882 CTGGAGAAGCTTA-CCGACGACATTAGGGTTTTGACGATCAGGGGGGCC-GGGGGGTGTGCGCAC
66 C-GGAGAA-C-CAGCCGGCGACATTGGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCAC
* * * * * * *
19169945 CTGATGTGCCATTGATGCTAGTACTTGGCCATTATAATGGCCCCCTATCCCTCATCAAACCTCGA
128 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
19170010 GAACAAACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGTG
193 GAACTAACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
19170075 CCTGAAATGGGGACAATTTTTTGAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAT
258 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-
* * *
19170140 TTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
322 ATTTTTTGTGCATGCC-AACAAAAATACAAGGAT-ACATCTA-CAAGTTT-GGGCCAAAACTCC-
* * *
19170205 TTCA-AAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAA
382 TTCAGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAA
*
19170268 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
445 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
19170333 TAAAAATGGCATTGGCA--CATAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
510 TAAAAATGGCATTGGCATGC-T-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
19170396 TCCACGGCTTGCGCATCCCGTCTATCTGGCTGGCGTAGTGC
573 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
19170437 TTGCCCTCCT
Statistics
Matches: 1333, Mismatches: 129, Indels: 95
0.86 0.08 0.06
Matches are distributed among these distances:
886 7 0.01
887 11 0.01
888 372 0.28
889 93 0.07
890 15 0.01
891 107 0.08
892 136 0.10
893 2 0.00
894 19 0.01
895 113 0.08
896 77 0.06
897 108 0.08
898 122 0.09
899 70 0.05
900 21 0.02
901 4 0.00
902 12 0.01
903 16 0.01
904 28 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGA
CGGAGAACCAGCCGGCGACATTGGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTAACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTGTGCATGCCAACAAAAATACAAGGATACATCTACAAGTTTGGGCCAAAACTCCTTCAGAAAA
AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTTCGGATTGGCCTTAGG
CATACGGAGTTCATATCACCATTCTAAGCATCAGACCAGATCGAGGGTGCGGCAGCAGGATCAGC
AACACGTAGAGGGACCCGATCGATCCCCGGCTAGCGCATCCTGCCCCACTGGCCAGCTGAGCACC
CACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAGCATACGAAGT
TCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGCACAT
Found at i:19171381 original size:26 final size:26
Alignment explanation
Indices: 19171345--19171397 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19171335 GTTGACGTAG
19171345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19171371 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19171397 G
1 G
19171398 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19172279 original size:26 final size:26
Alignment explanation
Indices: 19172242--19172294 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19172232 GTTGACTTAG
*
19172242 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19172268 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
19172294 G
1 G
19172295 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19173157 original size:26 final size:26
Alignment explanation
Indices: 19173121--19173173 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19173111 GTTGACTTAG
19173121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19173147 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19173173 G
1 G
19173174 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19173572 original size:903 final size:900
Alignment explanation
Indices: 19170528--19174978 Score: 5945
Period size: 903 Copynumber: 5.0 Consensus size: 900
19170518 AACCGGTTGG
* * *
19170528 CTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATAGGGGCACCATCACCGGAGCATCGCC
1 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCC
* * * * * * *
19170593 GAAGAACCTGACCTGCGACATTGTGGTTCCGGCGATTGGGGGGGTCGGGGGGGTGTGCGCACATG
66 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATG
* *
19170658 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
130 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
19170723 CTCGCACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGGCT
195 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
19170788 GAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTCGCTGAAT-T
259 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGT
19170852 GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
324 -TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
** * * * *
19170917 GAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCGAAAATCGTGAGAAATAGAAAACGAGT
388 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGT
* *
19170982 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTTTATGAATTTACAAGCCATAAAA
453 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
19171047 ATGG-AGTTGGCACGCATAAATATGAA-ATTGTGCCTAAACACACCTAGCA-CCTATCGATCCAC
518 ATGGCA-TTGGCACGCAGAAATATGAAGA-TGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * **
19171109 GGCTTGCGTATCTCGTCTCTCTAGCCGACGTAGTGCCCGCCCGTCTACCCGCCCGCTCGTTTCGT
581 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCTCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * * * **
19171174 CTGTTCGCTTAGGCATACGGAGTCCATTCCCACTCTAAGATCAG-ACCGGATTGAGGGTCGTGGC
645 CGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGG-CTGAGGGTTAT-GC
* * *
19171238 AGTAGGATC-AGCAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCCTCT
708 AGTAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
19171302 GGCAGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGT
772 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
19171367 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCACATG
837 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATC
* * * * *
19171431 CTGGGCTCGGGCATGTGCTGGTGCCACT-TTTTTCTTCGTCGGGTG-GCCATCACCGGATCATCG
1 CTGGGCTCGGGCATGTGCTGGTGCC-GTATTTTTCTTCATCGGG-GCACCATCGCCGGAGCATCG
* * * *
19171494 TCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCC-AGGGG-GTGCGCACAT
64 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAT
*
19171557 AATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
129 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
19171622 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
194 ACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
19171687 TGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-G
258 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATG
* *
19171751 TTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTC
323 -TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
19171816 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCTTGAAAAATAAAAAACGTG
387 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAG
* * *
19171881 TCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAAGGACCATTGTATAAATTTACAAGCCATAAA
452 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
19171946 AATGGCATTGGCACGCAGATATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
517 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * ** * *
19172011 GCTTTCGCATCCCGTCTCTCCGAACGGCGTAATG-C-C-CGCCCGCCCGCCCGCTCGTTTCGTCA
582 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCG
* * *
19172073 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-AACCGGACTGAGGG-T-TGCAGT
647 GTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGG-CTGAGGGTTATGCAGT
* * * *
19172135 AGTAAGATCGGCAGCACG-ATGAGGGGGACCAGGCCGATCCCCGGCTTGCGCACCCCGCCCCTCT
711 AG---GATCGACAGCACGCA-GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
19172199 GGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACAGAGTTCATTCCCAGT
772 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
19172264 CTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGA-CGAAGGGTTGCGACAGCACA--
837 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGGGTTGCGGCAGCACATC
* * *
19172326 -T--GCT-GGGC---T-C--GAG-C--A--TGTC--C-T--GGGCACCATCGTCGGAGCATCGCC
1 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCC
** * *
19172371 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATC--GGGGGCCTGGGGGGTCTGTGCACATG
66 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATG
19172434 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
130 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
19172499 CTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG
195 CTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
19172564 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTT
260 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTT
* *
19172629 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
325 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
** * *
19172694 AAAAATTTTAAAAAATCTTGAAGCC-CACAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTC
390 AAAAATTTTAAAAAATCCCGAA-CCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTC
* *
19172758 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCAGAAGCCATAAAAA
454 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19172823 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
519 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * ** *
19172888 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCTCGCCCGCCCGCCCACTCATTTTATTGG
584 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGCTCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
19172953 TTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAATATCAGATCAGGGTGAGGGTTATGACAGTA
648 TTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGGCTGAGGGTTATG-CAGTA
* * * * *
19173018 GGATTGACAGCACGTAGAGGGGGACCCGGCCAATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG
712 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
19173083 GTTGAGCGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
777 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
19173148 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCGCATC
842 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATC
19173207 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCC
1 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCC
19173272 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
66 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * ** * *
19173337 TGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGTCCCTGTATCCCTCATGAAACCTCAAGAAC
131 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
19173402 TCACACCCACTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTG
196 TCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
19173467 AAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTT
260 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTT
* * * *
19173532 TTTCTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAA
325 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
19173597 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
390 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCG
*
19173662 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAAT
455 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19173727 GGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
520 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
19173792 TACGCATCTCGTCTCTCTGGCCGACGTAGTACCTGCCTGTCGGCCCGCACGTCCGCCCGCTCGTT
585 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-G-C--TC-GCCCG--C--CCGCCCGCTCGTT
* * *
19173857 TCGTCGGTTGGCTGAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAAACAGACCGAGGGTTG
641 TCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-AACAGGCTGAGGGTT-
** * * * * *
19173921 CCGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGTTCCCCGGCTTGCGCATCCCACTCC
704 ATGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * *
19173986 TCTGGCCGACTTAGTGCCCGC-CTACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCC
769 TCTGGCCGGCTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * *
19174050 CAGTCTAAGCATATGGAGTACCTTCCCAGTCAAAGATTGGACCGGACCGAGGGTTACGGCAGCAC
833 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
19174115 AT-
898 ATC
* * * *
19174117 -T--GCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCC
1 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCC
* * ** *
19174179 AGAGAACTTGATGGGCGGCAATGGGGTTCCGACGATC-GGGGGGCCAGGGGGGATGTGCGCACAT
66 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACAT
* * * *
19174243 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGACA
129 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
19174308 ACTCACACCCCTTTAAAGAGCATTTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGC
194 ACTCACACCCC-TTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
19174373 CTGAAATGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
257 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
19174438 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCTAAAACTCCTT-
322 GTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
** * *
19174502 CGAAAGAAATTTTAAAAAATCCCGAACTATAAAAAGTTTAAAAAAT-TATGAAAAATAGAAAATG
387 CGAAA-AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCT-TGAAAAATAGAAAACG
*
19174566 AGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
450 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
19174631 AGAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
515 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
19174696 CGGCTTGCGCATCCCGTCTCTTTGGCTGGCGTA-----G-T-----GCCCGCCTGCTCATTTCAT
580 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCTCGCCCGCCCGCCCGCTCGTTTCGT
* * * * ** *
19174750 CGGTTGGCTTAA-GCATATGGAATTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGCC
645 CGGTTGGC-TAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGGCTGAGGGTTATG-C
* * * * * * *
19174814 AGTAGGATCGACAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCTCGCCCTTTTG
708 AGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * *
19174879 GTCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATC
773 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
19174944 TAAGCATTCGAAGTTCGTTCCCAGTCTAAGATCGG
838 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
19174979 GCTGGTGCCA
Statistics
Matches: 3147, Mismatches: 322, Indels: 172
0.86 0.09 0.05
Matches are distributed among these distances:
873 6 0.00
874 1 0.00
875 438 0.14
876 81 0.03
877 2 0.00
878 2 0.00
879 228 0.07
880 11 0.00
881 2 0.00
882 7 0.00
884 4 0.00
885 6 0.00
887 1 0.00
888 4 0.00
889 201 0.06
890 4 0.00
891 7 0.00
892 4 0.00
893 1 0.00
894 9 0.00
895 1 0.00
896 5 0.00
897 231 0.07
898 2 0.00
899 3 0.00
900 412 0.13
901 104 0.03
902 88 0.03
903 482 0.15
904 3 0.00
906 10 0.00
907 101 0.03
908 90 0.03
909 365 0.12
910 2 0.00
911 228 0.07
912 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCC
GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGGCTGAGGGTTATGCAGTAGGAT
CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATC
Found at i:19174957 original size:26 final size:26
Alignment explanation
Indices: 19174921--19174973 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19174911 GTTGACTTAG
19174921 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* * *
19174947 GCATTCGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
19174973 G
1 G
19174974 ATCGGGCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:19177491 original size:26 final size:26
Alignment explanation
Indices: 19177455--19177507 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19177445 GTTGACTTAG
19177455 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19177481 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19177507 G
1 G
19177508 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19180224 original size:26 final size:26
Alignment explanation
Indices: 19180187--19180239 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19180177 GTTGACTTAG
* *
19180187 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
19180213 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
19180239 G
1 G
19180240 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:19180615 original size:899 final size:896
Alignment explanation
Indices: 19176436--19180909 Score: 5490
Period size: 899 Copynumber: 4.9 Consensus size: 896
19176426 GCATACGGAC
* * * * * * *
19176436 CGAGGGTTGTGGCAACAGGATTGGCAGCACGCAGAGGGGGACCCTG-CCGATCTCTGACTTGCGC
1 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGC
* * * * *
19176500 ATCCCACCCATCTGGCCGGCTGAGCGCCCGGACGCTTGTTTCATGGGTTGACTTAGGGATACGGA
65 ATCCCACCC-TCTGG-CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * * * * * *
19176565 GTTCATTCCCAGCCTAAGCATACGGAGTTCGTTCCCCGTCAAAGATCAGA-CCGAAACAAAGGTT
128 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTT
** * * *
19176629 GCGGCAGCACATGCCAGCCTCGGGCATGTGCTGGTGCTGCATTTTTCTCCGTCGGGGCACCATCG
192 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCG
* * *
19176694 CTGGAGCATCGTCGGAGAACCTGACC-GACGGCATTGGGGTTC-CGACGATCGGAGGGGCCGGGG
256 CCGGAGCATCGTCGGAGAACCTGACCAG-TGGCATTGGGGTTCTAG-CGATCGGAGGGGCCGGGG
*
19176757 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTC
319 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
19176822 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAATA
384 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
**
19176887 GCCATTAAAGTG-GCGAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
449 GCCATTAAAGTGTATG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
* *
19176951 GTTTTTAGCTGAATTTTTTTGTGCATGTCAACAAAAATACAAGGATCACATCTACCAAGTTTGGA
513 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-
* *
19177016 TTC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGA
577 -GCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
19177080 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
641 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
19177145 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAAT-TGCCTAAACCCACGTACC
706 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG-ATGTGCCTAAACCCACCTACC
* * * *
19177209 ACCCTATCGATCAACGGCTTGCGCAT-CCGTCTCTCTGGCTGACGTAGTTCCCGC-CTGCCCGCC
770 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTC-GCCCGCC
* * * * * * *
19177272 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGCTCTG-ACCGGAC
834 CGCTCGTTTCGTCGATTGGCTCAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GAACTGGAT
* * * * *
19177335 CGAGGGTTGCGGTAGCAGGATCGGTAGCATGCTGAGGGGGACCCGCCCGATCCCCGGCTTGCGTA
1 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* *
19177400 TCCCATCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG
66 TCCCA-CCCTCTGGC-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
19177465 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGC
129 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGC
* * * * *
19177530 GACAGCACATGCTGGGCTCGAGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCGCCGTC-CT
194 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCGC-
* * * * * *
19177594 CGGAGAATCGCCGGAGAACCTGACCGGTGGCATTGAGGTTCTAGCGATC-AAGGGGCC-AGGGGG
257 CGGAGCATCGTCGGAGAACCTGACCAGTGGCATTGGGGTTCTAGCGATCGGAGGGGCCGGGGGGG
*
19177657 TGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
322 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19177722 AAACCTTGGGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCC
387 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
19177787 ATTAAAGTGTCA-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
452 ATTAAAGTGT-ATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
* * *
19177851 TTTAGCTG-ATGTTTGTTGTGCATGCCAACAAAAATACAAGGTTCACGTCTACCAAGTGTGGGAC
516 TTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-C
* * * * **
19177915 CAAAACTTCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTTAAAATCGTGAAAA
579 AAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
19177980 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTT
644 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *** * *
19178045 ACAAGCCATAAAAATGGCATTTGCATGTAGAAATATAAAGATG-GGCTGAAACCCACCTACCACC
709 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT-AAACCCACCTACCACC
** * * *
19178109 CTATCGATCCACAACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCC
773 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCG-C
* * * * *
19178174 TGCCCGCTTATTTCGTCGATTGGCTTC-GGCATACGGAGTTCATTCCCAATCTATGATCGGACTA
837 T---CG----TTTCGTCGATTGGC-TCAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTG
19178238 GAT
894 GAT
* * * * ** *
19178241 CGTGGGTTGCAGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCGTCGGCTTGTGCA
1 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * *
19178306 TCCCAGCCCTCTGGTCGACTGAGCGCCCGAACGCTCGTTTCGTGGGATGACTTAGGCATACAGAG
66 TCCCA-CCCTCTGG-CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
19178371 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGATCTGACCGAGGTTTGC
129 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGC
* * * * * * * * * ** * * * **
19178436 GACAGTAGGAT-C-GGCAGCACGCAG-AGGGGGACCTGATCGATCCTCA-GCTTGTGCATCCCGC
194 GGCAGCA-CATGCTGG--GCTCG-GGCA-TGTG--CTGGT-G--CCGCATTTTTCTTCGTCGGGC
* * * * * ** * *
19178497 CCCTATGGCCTGTTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGCATATAGTCGAATTG
249 ACC-ATCGCC-G--GA------GCA---TCG--TCG-GAG--AACCT--G-A-CCAGTGGCATTG
* *
19178562 GGGTTCCCA-CGATC-GAGGGGCC-GAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
292 GGGTT-CTAGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
19178624 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTTGAGAACTCACACCCCCTTAAAGAGCAT
356 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
* *
19178689 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAA
421 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAA
* *
19178754 ATGGTCACAAAATCTTGTACACTTCAAGTTTTTAACTGAATTTTTTTGTGCATGCCAAAAAAAAT
486 ATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * **
19178819 ACAAGGATCATGTCTACCATGTTTGAGGCCGAAAA-TCCTTCAAAAAAAATTTTAAAAAATCCCG
551 ACAAGGATCACGTCTACCAAGTTTG-GG-CAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * *
19178883 AACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACAAGTCGTCTTGCCATAAAACTTCACG
614 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * ** *
19178948 TGAGGGCTCAAGGGACCATTGTATGAATTTACAAGCTGTAAAAATGGCATTGGCATGA-AGAAAT
679 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CACAGAAAT
* * *
19179012 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT-CCATCTCTTTG
743 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
19179076 GCTGGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTTGATTGGCTTAGGCATACAGAGT
808 GCCGGCGTAGTGCCCG-CT---CGCCCGCCCGCTCGTTTCGTCGATTGGCTCAGGCATACAGAGT
19179141 TCATTCCCAGTCTAAGATC-AGACTGGAT
869 TCATTCCCAGTCTAAGATCGA-ACTGGAT
* * * * * * * *
19179169 CAAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGTGGGAGACCCGGCCGATCCCTGGCTTGCGCA
1 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * * * * *
19179234 TCTCGC-CCCTAC-GGCCAGTTAAGCGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATAGGG
66 TC-C-CACCCT-CTGGCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
19179297 AGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGT-TAAGATCGGATCAGACCGAGGGTT
127 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
* * ** * *
19179361 GCGGCAACACATGCTAGGCTTAGGCATGTGCTGGTACCACATTTTT-TTCGTCGGGGCACCATCG
192 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCG
* * * * * *
19179425 CCGGAGCATCGTCGGAGAACCTGAACTGCGGCATTGGGGTT-TCAGCGATCGGCGGGGTCGGAGG
256 CCGGAGCATCGTCGGAGAACCTGACCAGTGGCATTGGGGTTCT-AGCGATCGGAGGGGCCGGGGG
** *
19179489 GGTGTAAGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
320 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
19179554 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
385 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
19179619 CTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
450 CCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
*** * *
19179684 TTTTAGCTGAATTTTTTTGTGCACAACAACAAAAATACAAGGATCACGTCTACCAAGTTCGAGGT
515 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGC
* * * *
19179749 AAAAACTCCTTCCAAAAAAATTTTAAAATATCTCGAACCAG-AAAAAGTTTCAAAAATCATGAAA
579 AAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-GTAAAAAGTTTCAAAAATCGTGAAA
*
19179813 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATT
643 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
19179878 TACAAGCCATAAAAATGGCATTTGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAGC
708 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
19179943 CTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCTCGCCCGCCCGCT
773 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCT
* *
19180008 CGTTTCATCGGTTGGCTCAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGAT
838 CGTTTCGTCGATTGGCTCAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGAT
* * * * *
19180067 CGAGGGTTGTGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCAACTGATCCCCGGCTTGTGCA
1 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
*
19180132 TCCCGACCCTCTGGTCGACTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
66 TCCC-ACCCTCTGG-CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
19180197 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTAC
129 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGC
** * * *
19180262 GGCAATACTTGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGACACCATCACC
194 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG-CACCATCGCC
* ** * * * *
19180327 GGGGCATCAACGGAGAACTTGACCAGTTGCTTTGGGGTTCTAGCGATCGGGGGGGCCGGGGGGGT
258 GGAGCATCGTCGGAGAACCTGACCAGTGGCATTGGGGTTCTAGCGATCGGAGGGGCCGGGGGGGT
* * *
19180392 GTGCACACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGG-GCCCTATCCCTCATCA
323 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
19180456 AACCTCGAGAACTCACACTCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCA
388 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
19180521 TTAAAGTGTATGAAATGCGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
453 TTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
* *
19180586 TAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAA
518 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCAAA
* * * * **
19180651 AACTCCCTCCGAAAAAATTTTAACAAAATCCAGAACTGTAAAAGGTTTCGTAAATCGTGAAAAAT
582 AACTCCTTCCGAAAAAATTTTAA-AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* *
19180716 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATCAATTTAC
646 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* ** * *
19180781 ACGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCTACCCTA
711 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * *
19180846 TCGATCCATGGTTTGCGCATCCCGTGTCTCTAGCCGGCGTAGTGCGCACTCGCCTGCCCGCTCG
776 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCG
19180910 CTAGTTTCGT
Statistics
Matches: 3084, Mismatches: 390, Indels: 201
0.84 0.11 0.05
Matches are distributed among these distances:
896 9 0.00
897 434 0.14
898 250 0.08
899 550 0.18
900 335 0.11
901 444 0.14
902 25 0.01
903 3 0.00
905 5 0.00
906 225 0.07
907 9 0.00
908 7 0.00
910 4 0.00
911 8 0.00
912 8 0.00
913 6 0.00
915 2 0.00
917 2 0.00
919 1 0.00
920 13 0.00
921 8 0.00
923 4 0.00
924 3 0.00
925 3 0.00
926 7 0.00
927 34 0.01
928 180 0.06
929 5 0.00
930 1 0.00
931 1 0.00
932 24 0.01
933 448 0.15
934 14 0.00
935 2 0.00
936 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
TCCCACCCTCTGGCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGG
CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGCCGGA
GCATCGTCGGAGAACCTGACCAGTGGCATTGGGGTTCTAGCGATCGGAGGGGCCGGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCAAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGT
CGATTGGCTCAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGAT
Found at i:19180970 original size:26 final size:26
Alignment explanation
Indices: 19180936--19180985 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
19180926 GCTTAGGGCT
* * *
19180936 TACGGAGTTTATTCCCAGTGTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
19180962 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
19180986 ATCAGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:19181860 original size:26 final size:26
Alignment explanation
Indices: 19181831--19181883 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19181821 GTTCACTTAG
* *
19181831 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
19181857 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19181883 G
1 G
19181884 ATCAGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19182767 original size:26 final size:26
Alignment explanation
Indices: 19182731--19182781 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19182721 GTTGACTTAG
19182731 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19182757 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
19182782 GGATCTGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19182934 original size:899 final size:894
Alignment explanation
Indices: 19180914--19183501 Score: 3676
Period size: 899 Copynumber: 2.9 Consensus size: 894
19180904 CGCTCGCTAG
* * * * * *
19180914 TTTCGTTGGTTGGCTTAGGGCTTACGGAGTTTATTCCCAGTGTAAGCATACGAAGTTCATTCCCA
1 TTTCGTGGGTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
19180979 GTCTAAGATCAGACCGGACCGAGTGTTGCGGCAGCACTTGCTGGGCTCGGGCATGTGCTGGTGCT
65 GTCTAAGATCAGATCAGACCAAG-GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * *
19181044 GCATGTTTCTTCGTCGAGCCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGTTGCTTTGGG
129 GCATTTTTCTTCGTCGGGCCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGTAGCATTGGG
* * *
19181109 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
194 GTTCCGGCGATCGGAGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
19181174 CCCTTATATT--ACCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
258 CCCTTATATTGGACC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
19181237 GAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
322 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
19181302 GGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATAC
387 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATAC
* * * * * *
19181367 AAGGATCACGTCTACCAACTTTGGGGGTAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCAAAT
452 AAGGATCACGTCTACCAA-GTTCGGGGTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * * * *
19181432 C-GTAGAAAGTTTCGAGAATCGTGAAAAATAAAAAACGAGTCGTATTGCCATGAAACTTCACGTG
516 CAG-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
* * *
19181496 AAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATG
580 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GTAGAAATATG
* * *
19181561 AAGATGTGCCTAAACCCACCTACCACCTTATCGAACCACGGCTTGCGCATCCCGTCTCTCTGGCC
644 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-TGCATCCCGTCTCTCTGGCC
* * * * * * *
19181626 GGTGTAGTGCTCGCCCGCCCGCCCCCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
708 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCC
** * * *
19181691 CAGTCTAAGATTGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCC
773 CAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAACAGGATCGGCAACACGCAGAGGGGGACCC
* * * *
19181756 GACCGATCCCGGCTTGCGCATCCCGCCCCTCTGCCCGACTGAGCGCCCGTACGCTCA
838 GACCGATCCCGGCTTACGCATCCCGACCCTCTGCCCGACTGAGCACCCGCACGCTCA
* ** *
19181813 TTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
19181878 TCTAAGATCAGAT-AGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCC
66 TCTAAGATCAGATCA-GA-CCAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * ** *
19181942 GTATTTTTCTTCATCGGGGCACCATCGCAGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGG
129 GCATTTTTCTTCGTCGGGCCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGTAGCATTGGG
* ** *
19182007 GTTTCGGCGATCGGAGGGGTTGGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGG
194 GTTCCGGCGATCGGAGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
19182072 CCCTTATATTGGTCCCCTATGCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
258 CCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
19182137 AGATTTTACGGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAGTGCGGATACTTTTTTCAAATG
323 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * **
19182202 GTCACAAAATCTTGTACACTTCGGGTTTTTAGCTAAATTTTTTGGTGCACAACAACAAAAATACA
388 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACA
* *
19182267 AGGATCACGTCTACCAAGTTCGAGGTAAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
453 AGGATCACGTCTACCAAGTTCGGGGT-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* *
19182332 AGAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAA
517 AGAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAA
* *
19182397 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACGTAGAAAAATGAA
582 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GTAGAAATATGAA
* * *
19182462 GATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTATGCATCCCGTCTTTCTGGCCGA
646 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-TGCATCCCGTCTCTCTGGCCGG
*
19182527 CGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCA
710 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCA
* ** * *
19182592 GTCTAAGATCAGACCAGACCATGGGTTGTGGTAACAGGATCGGCAACATGCAGAGGGGGACCCGA
775 GTCTAAGATCAGACCAGACCAAGGGTTGCAGCAACAGGATCGGCAACACGCAGAGGGGGACCCGA
* * *
19182657 CCGATCCTCGGTTTATGCATCCCGACCCTCTTG-CCGGCTGAGCACCCGCACGCTCA
840 CCGATCC-CGGCTTACGCATCCCGACCCTC-TGCCCGACTGAGCACCCGCACGCTCA
19182713 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
19182778 TCTAGGATCTGATCAGACCAAAGGTTGCGGCAGTACATGCTGGGCTCGGGCATGTGTTGGTGCCG
66 TCTAAGATCAGATCAGACC-AAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
19182843 CATTTTTCTTCGTCGGGCCACCATCGCCGGAGTATCGCCGGAGAGCTTGACCGATAGCATTGGGG
130 CATTTTTCTTCGTCGGGCCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGTAGCATTGGGG
*
19182908 TTCCGGTGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
195 TTCCGGCGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
19182973 TTTATATTGGACCCTTATCCCTCATCAAACCCCGAGAACCCACACCCCCTTAAAGAGCATTTGAG
260 CTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
19183038 ATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
325 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
19183103 CAGAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
390 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAAG
* * * * *
19183168 GATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCAT
455 GATCACGTCTACCAAGTTCGGGG-TAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCAG
*
19183233 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCGTGAAACTTCACGTGAAGG
519 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
* * *
19183298 CTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATTGCATTGGCATTAAGAAATATGAAGA
584 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGT-AGAAATATGAAGA
* * *
19183363 TATGCCTAAACCCACCTACTACCCTCTCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCCGGCG
648 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTT-GCATCCCGTCTCTCTGGCCGGCG
*
19183428 TAGTGCCTACCCGCCCGCCCGCCCGCTCGTTT-AGTCGGTTGGCTTAGGCATACAAAGTTCATTC
712 TAGTG----CCCGCCCGCCCGCCCGCTCGTTTCA-TCGGTTGGCTTAGGCATACAGAGTTCATTC
19183492 CCAGTCTAAG
772 CCAGTCTAAG
19183502 CATACGGAGT
Statistics
Matches: 1491, Mismatches: 179, Indels: 34
0.88 0.11 0.02
Matches are distributed among these distances:
898 221 0.15
899 980 0.66
900 225 0.15
901 3 0.00
902 1 0.00
903 61 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGATCAGACCAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
ATTTTTCTTCGTCGGGCCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGTAGCATTGGGGT
TCCGGCGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAAGG
ATCACGTCTACCAAGTTCGGGGTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCAGAA
AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGTAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTGCATCCCGTCTCTCTGGCCGGCGTAGT
GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
GATCAGACCAGACCAAGGGTTGCAGCAACAGGATCGGCAACACGCAGAGGGGGACCCGACCGATC
CCGGCTTACGCATCCCGACCCTCTGCCCGACTGAGCACCCGCACGCTCA
Found at i:19183841 original size:745 final size:735
Alignment explanation
Indices: 19182700--19184237 Score: 2183
Period size: 745 Copynumber: 2.1 Consensus size: 735
19182690 CCGGCTGAGC
* * * *
19182700 ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
1 ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * ** *
19182765 AGTTCATTCCCAGTCTAGGATCTGATCAGACCAAAGGTTGCGGCAGTACATGCTGGGCTCGGGCA
66 AGTTCATTCCCAGTCTAAGATCAGATCAGACCAAAGGATGCAGCAACACATACTGGGCTCGGGCA
* ** * * * * *
19182830 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCGCCGGAGTATCGCCGGAGAGCTTGACC
131 TGTGCTGGTGCCGCATTTTTCTTCACCGGGCCACCATCGCCGGAGCATCACCGGAGAACCTAACC
** * *
19182895 GATAGCATTGGGGTTCCGGTGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
196 GATAGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGCTATGCGCACATGATGTGCGATGGGTG
* * * *
19182960 CTGGTACTTGGCCTTTATATTGGACCCTTATCCCTCATCAAACCCCGAGAACCCACACCCCCTTA
261 CTGGTACTTGGCCCTTATACTGGACCCTTATCCCTCATCAAACCCCAAAAACCCACACCCCCTTA
*
19183025 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGACACT
326 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * ** *
19183090 TTTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCC
391 TTTTTCAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTAGCTGAATATTTTTT-TCCATGCC
* *
19183154 AACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
455 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * *
19183219 AAATCCCGAACC-ATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCGTGA
520 AAATCCCAAACCGA-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATATTGCCATGA
* *
19183283 AACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATTGCATTGGCAT
584 AACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * **
19183348 -TAAGAAATATGAAGATATGCCTAAACCCACCTACTACCCTCTCGATCCACGGCTTTCGCATCCC
649 GGAA-AAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCATCCC
*
19183412 GTCTCTCTGGCCGGCGTAGTGCCT
713 GTCTCTCTAGCCGGCGTAGTG-CT
* **
19183436 ACCCGCCCGCCCGCCCGCTCGTTTAGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAA
1 A--------CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19183501 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGATGCAGCAACAGATACTGG
58 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCAAAGGATGCAGCAACACATACTGG
* * *
19183565 GCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAG
122 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCCACCATCGCCGGAGCATCACCGGAG
* *
19183630 AACCTAACTG-TCGGCATTGGGGTTCCGACGATC-GAGGGGGCCGGGGTGCTATGCGCACATGAT
187 AACCTAACCGAT-AGCATTGGGGTTCCGACGATCGGA-GGGGCCGGGG-GCTATGCGCACATGAT
* *
19183693 GTGTGATGGGTGCTGGTACTTGGCCCTTATACTGG-CTTCC-TATCCCTCATCAAACCTCAAAAA
249 GTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGAC--CCTTATCCCTCATCAAACCCCAAAAA
* *
19183756 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
312 CCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
19183821 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTAGCTGAATAT
377 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTAGCTGAATAT
* ** *
19183886 TTTTTTCCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGGTAAAACTCCTTCTA
442 TTTTTTCCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* *
19183951 AAAAAATTTTAAAAAATCCCAAACCGAAGAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTC
507 AAAAAATTTTAAAAAATCCCAAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
* *
19184016 GTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAA
572 ATATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAA
* * *
19184081 TGGCATTGGCATGGAAAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCATGGC
637 TGGCATTGGCATGGAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*
19184146 TCGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCT
702 TCGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCT
*
19184180 ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGCGTTCATTCCCAGTCTAAG
1 ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19184238 AATGGATCAG
Statistics
Matches: 707, Mismatches: 78, Indels: 34
0.86 0.10 0.04
Matches are distributed among these distances:
736 54 0.08
743 4 0.01
744 195 0.28
745 443 0.63
746 11 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (735 bp):
ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCAGATCAGACCAAAGGATGCAGCAACACATACTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCACCGGGCCACCATCGCCGGAGCATCACCGGAGAACCTAACC
GATAGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGCTATGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATACTGGACCCTTATCCCTCATCAAACCCCAAAAACCCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTAGCTGAATATTTTTTTCCATGCCA
ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
AATCCCAAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATATTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCATTGGCATGG
AAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCATCCCGTC
TCTCTAGCCGGCGTAGTGCT
Found at i:19185182 original size:896 final size:894
Alignment explanation
Indices: 19183443--19201273 Score: 16203
Period size: 897 Copynumber: 19.9 Consensus size: 894
19183433 CCTACCCGCC
* * * * **
19183443 CGCCCGCCCGCTCGTTTAGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* ** * * * * * *
19183508 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGATGCAGCAACAGATACTGGGCTTGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** * * *
19183573 ATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * * * *
19183638 TGTCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGTGCTATGCGCACATGATGTGTGATGGG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
* ** ** *
19183703 TGCTGGTACTTGGCCCTTATACTGGCTTCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCT
261 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
*
19183768 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
326 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
19183833 CTTTTTTCAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTAGCTGAATATTTTTT-TCCATG
391 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATG
** ** **
19183897 CCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGGTAAAACTCCTTCTAAAAAAATTTTA
455 CCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* ** * *
19183962 AAAAATCCCAAACCG-AAGAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTATTGCCAT
519 AAAAATCCCGAACCGCAA-AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
19184026 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGC
583 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
19184091 ATGGAAAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCATGGCTCGCGCATCC
648 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * **
19184156 CGTCTCTCTAGTCGGCGTAGT----G-CTACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
713 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * *** * *
19184216 CGGCGTTCATTCCCAGTCTAAGAATGGATCAGACCAAGGGTTGCTATAGTAGGATTGGCAGCACG
778 CGGAGTTCATTCCCAGTCT---AA--GATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * *
19184281 CAGAGGGGG-CTCGGCAGATCCCCGGCTTGCGCTTCCCGCCCCTCTGGCCGGCTGAG
838 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
**
19184337 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
19184402 GAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGAGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * * *
19184467 ATGTGCTGGTGCCATATTTTTCTTCGCCAGCGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * ** * *
19184532 CGGCGGCATTGTGGTTCCGGTGATCTAGCGGGCCGGGGGGGTTGTGCGCACATGATGTATGATGG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGTGATGG
19184597 GTGCTGGTACTTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
260 GTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
* *
19184662 CTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGA
324 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
19184727 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
389 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
19184792 GCCAAAACAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTTT
454 GCCAAAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
19184857 AAAAAATCCCGAACAGCAAAAAGTTTCACAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
518 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
** *
19184922 GAAACTTCACGTGAAGGCTTAAGGGACTGTTGTATGAATTTACAAGCCATAAAAATGGCGTTGGC
583 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
19184987 ACGCAAAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCACATCC
648 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
19185052 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTTG-TTCTGTCGGTTGGCTTAGGCAT
713 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC-GTCGGTTGGCTTAGGCAT
* * * * * * *
19185116 ATGGTGTTCATTCCTAGTCTAAGATCAGACCGAGGATTGCGGCAGTAGGATCGACAGCATGCAGA
777 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * * * * *
19185181 GGGGGGCCCGACCGAACCCTC-GCTTGTGTATCCCGTCCCTCTGCCCGGTTGAG
842 GGGGGACCCGGCCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
19185234 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCAAATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*** * * * * * * *
19185299 GAGTTCATTGTTAGTCTAAGATCGGACCGGACAGAGGTTTACGACAGCACATGCTAGGCTCGGCC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * ** * *
19185364 ATGTGCTGGTGCCGCATTTTTTTTCATCGGGGCACCATCG-CGGGAGCATTACCGGAGAGCCTAA
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGA
* * * * *
19185428 CCGGCAGCATT-GGGTTCCGACGATCGGGGGGG--GGCCGGGGGTATGGGCACATGATGTGCGAT
195 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG--GGGGGTGTGCGCACATGATGTGTGAT
*
19185490 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
258 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
* * * *
19185555 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAATAGCAATTAAAGTGTCTAAAATGGGG
323 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
19185620 ACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
388 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
19185685 TGCCAAAAAAAATACAAAGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
453 TGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** ** *
19185750 TAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
517 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * * *
19185815 TGAAACTTCACGCGAAGGCCTAAAGGACCACTGCATGAATTTACACA-CCATAAAAATGGCATTG
582 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTG
* * *
19185879 GCATGCAGGAATATGAAGAGGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCAT
646 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
19185944 CCCGTTTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
711 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
19186009 TACGGAGTTGATTCCCAATCTAAGATCAGACTAGACCAAGGGTTACGGCAGTAGGATCGACAG-A
776 TACGGAGTTCATTCCCAGTCTAAGAT----C-AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * * * *
19186073 GCACAGCGGGGGACCCGGTCGATCCCCGAG-TTGTGCATCTCGACCCTCTGGTCGGTTGAG
836 -CGCAGAGGGGGACCCGGCCGATCCCCG-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
19186133 CGCCCGTACGATCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCTAGTCTAAG-ATTAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-T--
* * * * *
19186197 ACTGGATCAAGGGTTACGGCAACAGGATCGGCAGAACACAGAGAT-GGACCCGACCGATCCCCGG
63 AC-GG----A--GTT-------CA--TTC-CCAG-TC-TA-AGATCGGACCAGACCGA-----GG
* * * * * * ** *
19186261 CTTGC-GCATCCCGCCCCT-CT-GGC-C-GGC-TGAGC-GCTCGCACGC-TCGTTTCATGGGTTG
103 GTTGCGGCA----GCACATGCTGGGCTCGGGCATGTGCTGGT-GC-CGCAT-TTTTC-TTCGTCG
**** * * * * * * * * *** *
19186318 ACTTAGGCAT-AT-AGAGTTCAT-TCC-TAGTCTAAGCAT-A-CGGAGTTCATTCCCAG-T-CTG
160 GGGCA-CCATCGTCGGAG--CATCGCCGGAG---AA-CCTGACCGGCG-GCATT-GGGGTTCCGG
* ** * * * * * *
19186375 AGATCGGATTGGACC--GAGGGTAGCAGCAGCACATGCTG-G-GCTCGGGCATGTGCTGGTGC-T
216 CGATCGG-GGGGGCCGGGGGGGT-G-TGC-GCACATGATGTGTGAT--GG---GTGCTGGTACTT
** * * * * ** * * * * ** *
19186435 -GCATTTTTCTTCGCTGGGGCACC-ATCACCAGAGC-ATCGTTGGAGAACCTGACCGACGGCATT
272 GGCCCTTAT-AT---T-GGCCCCCTATC-CCTCATCAAACCTT-GAGAA-CTCA-C-ACCCCCTT
*** ** **** ***** * * * * ** * * *
19186497 GGGGTTCCGGGGATCGAGGGGGCCGGGGGGTGTGC-GCACA-TGATGTGCAAT-GGGTGCCGGTA
327 AAAGAGCATTTGA--GA-TTTTAC---AGGTTTGCTGC-CAGT-A-G-CCATTAAAGTGTCTGAA
* * * * ** ** ** * ** *** ***
19186559 CT-TGG-CCCTTATATTGGCCCTC-TATCCCTCATCATACCTCGAGAACTCACACCCCCTTAAAG
382 ATGGGGACACTT-T-TT-----TCAAAT-GGTCA-CA-AAATCTTGTA--CACTTCGAGTT-TTT
* *** * * *
19186621 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGAGGA-CACTTT
434 AGC---TGA-ATTTT-----TTTG-TG-CA-T-GCCA--AAA--AAAT-ACA--AGGATCACGTC
** * * * **** ** *** *** * *
19186685 TTTCAA--AT-GGTCACAAAA-TCTTTTACACTTTGAGTTTTTATCTGAATTTTTTTGTGTA-TG
479 TACCAAGTTTGGGGC-CAAAACTC-CTT-C-CGAAAAAATTTTA----AA--AAATCCCGAACCG
** * ** * **** * ** ** *
19186745 CCAATAAAAATACAAGGATCACATC-T-ACCAAGTTTGGGGCCAAAAC-TCCTT-CCGAAAAAAT
534 -CAA-AAAGTTTCAA--A--A-ATCGTGA--AAAATAGAAAACGAGTCGT-CTTGCC-ATGAAAC
* ** ** * ** * ** *
19186806 TTTA--AAAAATCTT---GAACC---GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
588 TTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-G---GC-A-T
* * * * * * ** *** ** * * ***
19186863 CGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
644 TGGCATG-CA-GAAA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCA-CCCTATCG
* * * *** *** * ** ** * *** ***
19186928 ATGGCATTGGCACATAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACG
694 AT-CCA-CGG--C-TTG-CGCATCCCG-TCT-CTCT-GGCCGGCGTAGTGCCCGCCCG--CC-C-
* * ** * * * ** ** * * *
19186992 GCTTGCGCATCCCGTCTC-TCTGGCCGACATAGTGC--CCGCCCGCTTGTTTCGTCGGTGGGCTT
746 GC--CCGC-T--CGTTTCGTC-GGTTGGCTTAG-GCATACG-GAG-TTCATTC-CCAGT---CTA
* * * * * * * * * *
19187054 AG-GCATACGGA-GTTCATTC-CCAGTCTAAGATCGGCCAG-ACTG-AG-GTTTGCGGTAGCAGG
798 AGATCAGACCGAGGGT--TGCGGCAG-C-AGGATCGG-CAGCAC-GCAGAG---G-GGGACCCGG
* * * ** *
19187113 ATCGGCAGCACACAGAG-GGGACCCGACCGATCCCCGACTTGCTCATGCCGCCCCTCTGGCCAGC
853 --CCG-ATC-C-CCG-GCTTG---CG--C-AT-CCCG-C---C-C---------CTCTGGCCGGC
19187177 TGAG
891 TGAG
* * * *
19187181 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAATCTAAGCAGACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
19187246 AAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
19187311 ATATGCTGGTGTCGCATTTTTCTTCGTCAGGGCACCA---TC---G--T---CGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * *
19187365 CGGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGAGGGGGTGTGTGCACATGATGTCTGAT-GG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
* * * **
19187429 TGCTGGTACTTGGCCCTTATGTTGGCCTCCTATCTCTCATCAAACCTCAAGAACTCACACCCCCT
261 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* *
19187494 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGACATGGTGACA
326 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
19187559 CTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
391 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
19187624 CAACGAAAATACAAGGATCGCGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTCTAA
456 CAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** **
19187689 AAAATCCCGAACCGCAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
520 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * *
19187754 AACTTCACGAGAAGTCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGGCATTGGCAC
585 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
19187819 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCA
650 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
19187884 TCTCTCTGGCTGACGTAGTGCCCGCCCGTCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCA
715 TCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * ** * *
19187949 TATGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCAAGGGTTACGGTTGTAGGATTGGCAGCA
776 TACGGAGTTCATTCCCAGTCT-A-A---GATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * ** ** * *
19188014 TGTAAAGGGGGACCCGATCGATCCCCGATTTGTGCATCCCGTCCCTCTGGCCGGCTGAG
836 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * * * *
19188073 CGCTTGCATGCTCATTTTGTGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * ** * * *
19188138 GAGTTGATTCCCAGTATAAGATCAAACCAGACCGAGGGTTACGGCTGCACATGCTAGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * ** *
19188203 ATGTGCTAGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* ** * *
19188268 CGGCAGCATTGGGGTTCCGATGATC-GGGGGGCC-GGGGGGTGTGCACAAATGATGTGCTG-TGG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG-TGATGG
* *
19188330 GTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTTGAGAACTCACACCCCC
260 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* * * * *
19188395 TTAAAGAGCATTTGAGATTTTGCAGATTTGCTACCAGTAGCCATTAAGGTCTCTGAAATGGGGAC
325 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
19188460 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATG
390 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
19188525 CCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTT
455 CCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTT
* * ** * *
19188590 TAAAAATCTCGAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
518 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
**
19188655 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGAA
583 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
19188720 ATGCAGAAATATGAAGATATGCCTAAACCCGCCTACCACCCTATCGATTCATGGCTTGCGCATCC
648 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
19188785 CGTCTCTCTGGTCGGCGTAGTACCTGCCTGCCCACCCACTCGTTTCGTCGGTTGGCTTAGGCATA
713 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
19188850 CGGAGTTCATTCCCAGTCTAAGATTCGACCGGACCGAGGGTTACGGCAGTAGGATTGGCAGCATG
778 CGGAGTTCATTCCCAGTCTAAGA-TC-A---GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * ** * * *
19188915 TAG-GGGGAACCAAGACGATCCCCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTAAG
838 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
19188971 CGCCCACATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
19189033 G-G---------A--C------C-G----GACTGAGGGTTACGGTAGCACATGCTGGGCTCAGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
19189075 ATGTGCTGTTGCCACATTTTTCTTCGTCAGGGCA-C--CGAC---G-ATCG--GG-G----TG--
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * ** * * *
19189124 -GTCGG---GGGGGTGTGC-GC-A-CATGATGTG-C-----GATG-G-G----TGCTG-GT-ACT
196 CGGCGGCATTGGGGT-TCCGGCGATC-GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGA-T
* ** ** * * * * *** *
19189168 TGGCCCTTATA-TTGGCCC-CATA-T--CCCTC-ATCAAACCT--TGAGAA-CTCGCACCCCCTT
258 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC---CCTCATCA-AACCTTG-A-GAACTC
* *** * * * * * * * *** *
19189224 AAAGAGCATT--TGAG-ATTTTACAGGTTTGC-TGCCAG-TAGCCATTA-------AAGTGTCTG
317 ACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTG
* *
19189277 AAAT-GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
380 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
19189341 TTTGTTCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAAATCCTTACGA
445 TTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * **
19189406 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
509 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
19189471 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAAT
574 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19189536 GGTATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCGACCACCCTATCGATCCATGGCT
639 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** *
19189601 TGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGTCCGCCCACTCGCCCATTCATTTCGTCGGT
704 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CGC-C-CGCCCGCTCGTTTCGTCGGT
* * * * *
19189666 TGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGGGGTAGCAT
765 TGGCTTAGGCATACGGAGTTCATTCCCAGTCT-A-A---GATCAGACCGAGGGTTGCGGCAGCAG
* * ** ** * * * * ** *
19189731 GATCGACAGCACGTAGAGGGGGACCCAACCGATCGTCGGCATGCGTATCTCACCCCGATGGTCGG
825 GATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
19189796 CTGAC
890 CTGAG
* ** * *
19189801 CGCCCGCACGCTTGTTTTTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAGG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
19189866 GAGTTCATTCCCAGTCAAAGATCAGACCAGAGCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
19189931 ATGTGCTGGTCCCGTATTTTTCTTCGTCGGGGCACCA---T-----CA---CCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * ** *
19189985 CGGCGGCATTGGGGTTCCGACGATCCGGGGTGTTGGGGAGGTGTGCGCACATGATGTAG-GATGG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT-GTGATGG
* * * * * * *
19190049 GTGCTAGTACTTGGCCCTGATAGTGGCCACCTATCTCTCATCAAACCTCGAGAACACACACCCCC
260 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* * *
19190114 TTAAAGAGAATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
325 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
19190179 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATG
390 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
19190244 CCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTA
455 CC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
** * *
19190309 AAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
519 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
**
19190374 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGAAA
584 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
19190439 TGCAGAAATATTAAGATATGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGTGCATCCC
649 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
19190504 GTCTCTCTGGCCGGCGTAGTGCCTGCCTGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATAC
714 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
19190569 GGAGTTCATTCCCAATCTAAGATTGGACCGGACCGGACCGAGGGTTACGACAGTAGGATTGGCAG
779 GGAGTTCATTCCCAGTCTAAGA-T----C--A---GACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * ** * * * * *
19190634 CATGTAG-GGGGAACCAAGACGATCCCCGACTTGCGTACCCCGCCCCTCTGGCCGGCTAAG
834 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
19190694 TGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAG--T---C-TA--
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
19190751 -AG---A-T--C-G-----GATCGGA-CTGA---A-GGTTGTGGTAGCACAAGCTGGGCTCAGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** * * * ****
19190798 ATGTGCTGTTGCCGCATTTTTCTTCGTTAGGGCACCGA-CGATCGG-G-GTGGTCGG-GGGGGTG
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC-ATCG-TCGGAGCATCGCCGGAGAACCTG
** * ** * * *** * * *
19190859 TGC-GC-ACA-TGATG-T---GCGAT---GGGTG-C-TGGTACT-TG-GC-CCTTATAT-TG--G
194 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATG
**** * * * * * * * * * * * * * *
19190906 CCCCCT-ATCCCT---CATCAAACCTCGAGAACTCAC-A-CCCCCTTAAAGAGCATTTGAGAATT
259 GGTGCTGGTACTTGGCCCTTATA--TTG-G--CCCCCTATCCCTCATCAA-A-C-CTTGAGAACT
* *** *** * * * * * *** ** * *
19190965 TACA--GGTTTGCTG-CCA-AT-AGCA-ATTA-AAGTGT-CTTAAATGGGGACACTT----T-TT
316 CACACCCCCTTAAAGAGCATTTGAG-ATTTTACAGGTTTGCTGCCA-GTAGCCA-TTAAAGTGTC
* * **** * * ***
19191017 TCAAAT--GGTCAC-AAAATC---TTGT-AC---A-CTTCG---AGTTTTT------AGCTGAAT
378 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-GTACACTTCGAGTTTTTAGCTGAAT
* * *
19191062 TTTTTTGTGCATGCCAAAAAAATACAAGGATCACATCAACCAAGGTTGGGGCCAAAACTCCTTCC
442 TTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
19191127 TAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
507 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
19191192 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAA
572 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *** * * *
19191257 TTGGCATTGGCCCACAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGCTCCACGG
637 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
19191322 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCTGGCCGCTCGTTTCGTCG
702 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--CC-GCCCGCTCGTTTCGTCG
* * ** *
19191387 GTTGGCTTAGGCATACCGAGTTCATTCCCACTCTAAGATCAGACCAGATCGAGCGTTATGGTAGC
763 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GA--G-G-GTTGCGGCAGC
* ** ** *
19191452 AGGATAGGCAGCACGCAGAGGGGGACCCGGCCGATCCTTGGCTTATGCATCGCGCCCCTCTGGCC
823 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
19191517 TGCTGAG
888 GGCTGAG
* * **
19191524 TGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGAATAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * **
19191589 AAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
19191654 ATGTGCTGGTGCCGCAATTTTCTTCG-CTGGGGCACCATCGCCGGAGCATCGCCAGAGCATCGTC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCAT---C---G--TCG---GAGCATCGCC
* * *
19191718 GGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGG-C-GGGGGGTGTGTGCACATG
184 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
**
19191781 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCAATCATCAAACCTTGAGAA
249 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
* * *
19191846 CTCACACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCT
314 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
19191911 TAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
379 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * **
19191976 TTTTGTGCGTACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCCCCAAAACTCCTTCCG
444 TTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
19192041 AAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTTAAAAATCGTGAAAAATAGAAAACTAGTC
508 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
19192106 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTACGAATTTACAAGCCATGAAAA
573 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19192171 CGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
638 TGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
19192235 CTTGTGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGAGCTCCCGCCCGCCCGCTCAATTT-GTC
702 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC--G--CCCGCCCGCCCGCTC-GTTTCGTC
* * * * *
19192299 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGCCTAAGATTGGACCGGACCAAGGGTTGCGACAG
762 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-T----CAGACCGAGGGTTGCGGCAG
* * * * * ** *
19192364 CAGGATCGACAGCACACAGAGGGGGACCTGACCGATCCCCGACTTGCGCATCTTGCCCCTCTGGT
822 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
19192429 CGGCTGAG
887 CGGCTGAG
* * * *
19192437 CACCTGCACGCTTGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
19192494 -AG---------A-TC--AGATC-G----GACTGAGGGTTGCAGTAGCACATGCTGGGCTTGCGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
19192541 ATGTGCTGGTGCCACATTTTTCTTCGTCGGAGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * * *
19192606 CGACGGCATTAGGGTTCCGGTGAT-GGGGGGGCGGGGGAGGGGGTGTGTGCACATGATGTGCGAT
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGC--CGG-GGGGGTGTGCGCACATGATGTGTGAT
* * *
19192670 AGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTACACCC
258 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
* *
19192735 CCTTAAAGAGGATTTGCGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAT-AAATGGG
323 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGG
* * *
19192799 GACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGC
387 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
19192864 ATGCCAAAAAAAATACAAGGATCACGTCTACAAAGCTTAGTGG-CAAAACTCCTTTCAAAAAAAT
452 ATGCC-AAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
19192928 TTAAAAAAATCCCGAACCGCAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAATCATCTTGC
515 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
19192993 CATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATT
580 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * **
19193058 GCCATGCAGAAATGTGAAGATGTGACTAAACCCACCTGCCACCCTATCGATCCACGATTTGCGCA
645 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
19193123 TCCCGTCTCTCTGACCGGTGTAGT----GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
710 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * * *** * *
19193184 ATGTGGAGTTCATTCCTAGTCTAAGATCAGAACGGACCAAGGGTTGCAATAGCAAGATCGACAGC
775 ATACGGAGTTCATTCCCAGTCTAAGATC---A--GACCGAGGGTTGCGGCAGCAGGATCGGCAGC
** * * * * * *
19193249 ACATAGAGTGGGACCCGACCAATCCCCGGCTTGCTCATCCCGCCCCTCTGGCTGGTTGAG
835 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* **
19193309 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* ** * * * *
19193374 GAGTTCATTCGCAGTCTAAGATCAAACTAGATCGAGGGTTGCGGTAGCACATGCTGAGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
19193439 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCATCATCGTCGAAGCATCGCCAGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * **
19193504 CGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGAGGGGGGTGTGCACACATGATGTGCAATGG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGTGATGG
* * *
19193569 GTGCTCGTACTTGGCCCTTATATAGGCCCCCTATCCCTCATCAAACCTTGAGAACACACACCCCC
260 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
*
19193634 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
325 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
19193699 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTATGCATG
390 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * * * *
19193764 CCAACAAGAATACAAGGGTCACGTCTAGCAAATTTGGGGCCGAAACGCCTTGCAAAAAAATTTTA
455 CCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
19193829 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATG
519 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
19193894 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCG
584 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * * *
19193959 TGCAAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTACGAATCT
649 TGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
19194024 CGTCTTTATGGCCGCCGTAGTGCCCTCCCGCCCGCCCGCCCGCCCCACTCGTTTCGTCGGTTGGC
713 CGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCG-----CTCGTTTCGTCGGTTGGC
* * * ** *
19194089 TTAGGCATACAGAATTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTT-CTAACAGTAGGAT
769 TTAGGCATACGGAGTTCATTCCCAGTCT-A-A---GATCAGACCGAGGGTTGC-GGCAGCAGGAT
** * * * * * * *
19194153 CGGCAGCAC-CTAG-GGGGGACCCGATCGATCCTCGGCTTGCGCCTCTCACCCATCTGGTCGACT
828 CGGCAGCACGC-AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
19194216 GAG
892 GAG
* * * **
19194219 CGCCCGCACGCTCGTTTCGTGGTTTGACATGGGCATACGGAGTTCATTCCCAGTCTAAGCATATA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
19194284 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATTCTAGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * * ** **
19194349 ATGTGCTGGTGCCATATTTTTCATCGCCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * ** **
19194414 CGGTGGCATTGGGGCTCTTGCGAT---------C--GGGGG-GTGCGCACATGATGTACGATGGG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
* ** * *
19194467 TGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAGATCCCCT
261 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
*
19194532 TAAAGAGCATTTGACATTTTACCA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
326 TAAAGAGCATTTGAGATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * * **
19194596 ACTTTTTTCAAATTGCCACAAAATCTTGTGCACTTCGAGTTTTTAGTTGAATGCTTTTGTGCATG
390 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
19194661 CCAAGAAAAATACAAGGGTCACGTTTACCAAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTA
455 CCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * * *
19194726 AAAAATCCCGAACCACAAAAACTTTCGAAAATCATGAAAAATAGAAAAAGAGTCGTCTTGCGATG
519 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19194791 AAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
584 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
19194856 TGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCTACGGGTTGCTCA-CCT
649 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-
* * * * * * *
19194920 CGTATCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCACCCGCTCATTTCCTTGGTTGGCTTATG
713 CGTCTCTCTGGCCGGCGTAGTGCCCG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
19194985 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAAGATTGGTAG
774 CATACGGAGTTCATTCCCAGTCTAAGAT-----CAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * *
19195050 CACGCAGAGGGGGACCTGGCCGATTCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
834 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
19195111 TGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCGTTCCCAATCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** * ** * *
19195176 GAGTTCATTCGTAGTCTAAGATC-GAACATGATTGAGGGTTACGGTAGCACATGCTGGGCTCGGG
66 GAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * * *
19195240 CATGTGCTGGTGCCGTATTTTTCTTCGCCAGGACACCTTCATCGGAGCATCGCTGGAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * * * *
19195305 CCGGTGG-ATTAGGGTTACGGTGATCGTGGGTGCCGGAGGGGGGTGTGCGCACATGATGTGCGAT
195 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-G-GGGGGGTGTGCGCACATGATGTGTGAT
19195369 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
258 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
* * *
19195434 CCTTGAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
323 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * ** * *
19195499 ACACTTTTTTCAAATAGTCACAAAATCTCGTACACTTCGTTTTTTTTGCTGAAGTTTTTTGTGCA
388 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * **
19195564 TGTCAACTAAAATTCCAGGATCACGTCTACCAAGTTCT-GGGCCAAAACTCCTTCTAAAAAAATT
453 TGCCAA-AAAAATACAAGGATCACGTCTACCAAGTT-TGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
19195628 TTAAAAAATCCCAAACCGCAAAATGTTTTAAAAATCGTGAAAAATAGAAAACCAGTCATCTTGCC
516 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
19195693 GTGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATATACAAGCCATAAAAATGGCATTG
581 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
19195758 GCACGTAAAAATATGAAGATGTGCCTAAGCCCACGTACCACCCTATCGATCCACGGCTTGCGCAT
646 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
19195823 CCCGTCTCTCTGGCTGGCGTAGTGCCTGCCCGTCCGCCCGCTCGTTTCGTCGATTGGCTTAAGCA
711 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *
19195888 TACGGAGTTCATTCCAAGTCTAAGATTGGACTGGATCAAGGGTTGCAGTAGCAAGATCGGTAGCA
776 TACGGAGTTCATTCCCAGTCTAAGA-T---C-AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * *
19195953 CGCAAAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTAAG
836 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
19196012 CGCTCGCACGCTCGTTTCGT-GG--G---T-----T---GA----ATT---AG-----GCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* ** * * * *
19196051 GAGTTCATTCCCAGTCTAAGGTCGGACCAGACCGACTGTTGTGGTAGCACATGTTGGGCTCGAGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
19196116 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * **
19196181 CGACGGCGTTGGGGTTCCGACTAT-TAGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
* *
19196244 TGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
261 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
*
19196309 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
326 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * * *
19196374 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTGTAGGTGACTTTTTTTATGAATGC
391 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
19196439 CAACAAAAACACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAACAATTTTA
456 CAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTA
* * *
19196503 AAAAATCCTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
519 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
19196568 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
584 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
19196633 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTC
649 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
19196698 GTCTCTCTGGCCGGCGTAGTTTCGCCCGCCCGCCTGGCCGCTCGTTTCGTCGGTTGGCTTAGGCA
714 GTCTCTCTGGCCGGCGTAG--T-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
19196763 TACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGGGGCAGCAGGATCGGCAGCA
776 TACGGAGTTCATTCCCAGTCTAAGATC--A---GACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* ** **
19196828 CGCAGAGGGGAACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTACCCGGCTGAG
836 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
19196887 CGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-T-----TC----C---C-
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * *
19196938 -AG-----T--C---C-AAGATCGGACCGGACTGAGGGTTACGACAGCATATGCTGGTCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * **
19196991 ATGTGCTAGTGCCGCATTTCTCTACGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * *
19197056 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGAGCACACATGATGTGCGATGGG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
*
19197121 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCACACCCCCT
261 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
19197186 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
326 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
19197251 CCTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGC
391 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
19197316 CAAAAAAAATACAAGGATCACCTTTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTAAA
456 C-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * **
19197381 AAAATCCCTAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
520 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
19197446 AACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACAC
585 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
19197511 ACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
650 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
19197576 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGCCCGCCCTCTCATTTCGTCGGTTGG
715 TCTCTCTGGCCGGCGTAGT----GCCCGCCCG--C-C-CGCCCG----CTCGTTTCGTCGGTTGG
* * ** *
19197641 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGAGTTGCTACAGCAAGAT
768 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-T----CAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * *
19197706 TGACAGCACGCAGAGGAGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGACCGGCTA
828 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
19197771 AG
893 AG
* * * *
19197773 CGCCCGTACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
19197838 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAACACATGCTGGGATCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *
19197903 ATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCAGAGAACCTGAT
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * *
19197968 CGACGGCATTGGGGTTCCGGCGATC-GGGGGGTCGGGGTGGGTGTGCGCACATGATGTGCT-TTG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTG-TGATG
* * * **
19198031 GGTGCTGGTTCTTGGCCATTATATTGGCCCCCTATTCCTCATCAAACCTCAAGAACTCACACCCC
259 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
*
19198096 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
324 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
19198161 CATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCAT
389 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
19198226 GCCAACAAAAATTCAAGGATCACCT-TACCAAGTTTGGGGCCAAAACTACTTCTGAAAAAATTTT
454 GCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * * *
19198290 AAAAAATCCCTAAGCACAAAAAG-TTCTGAAAATCGTGAAAAGTAGAAAATGAGTCGTCTTGCCA
518 AAAAAATCCCGAACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * * * *
19198354 TCAAACTCCACGTGAAGGCTTAAGGTACCATTGTACGAATTTACAAGCCATAATAATGCCATTGG
582 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
19198419 CACACAGAAATATGAAGATGTGCCTAAACCAACCTACCTCCCTATCAATCCACGGCTTGCGCATC
647 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
19198484 CCGTCTCTCTGGCCGGCGTAGTGCCAGCCCGCCCACCCGCCCTTTCGTTTCGTCGGTTGGCTTAG
712 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAG
* *
19198549 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAGGATCGGCA
773 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-G----AGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
19198614 GCATGCAGAGGGGGACCCTGTCGATCCCCAGCTTACGCATCCCGCCCCTCTAGCCGGCTGAG
833 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
19198676 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCGTACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * ** *
19198741 GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTAGGAGCGAGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** * * *
19198806 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGACCATCGTCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * * * *
19198871 CGGTGACATTGGGGTTCCAGCGATCGAGGGGGTCGGGGGGGTGTGCGCACTTGATGTGCGATGGG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
* * **
19198936 TGCTGGTACGTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCCAGAACTCACACCCCCT
261 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
*
19199001 TAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
326 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
19199066 CTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTGGTGCATGC
391 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** *
19199131 CAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAAGCCATCCGAAAAAATTTTAA
456 CAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
19199196 AAAATCCTGAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTCTTGCCAAGA
520 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
19199261 AACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
585 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
19199326 GCAGAAATATGTAGATCTTCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
650 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** ** * *
19199391 TCTCTTTGGCCAACGTAGTGCCCTTCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACG
715 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * *
19199456 GAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCAGTAGTAGGATCGGTAGCACGCA
780 GAGTTCATTCCCAGTCTAAGATCAGAC-----CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * * *
19199521 GAGGGGGACTCGACCGATTCCCAGCCTGCGCATCCCGCCCCTCTGGCCGGCTGAG
840 GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
19199576 TGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
19199641 AAGTTCAATCCCAGTCTAAGATC-AATCCAGACCGAGGGCTGCGGTAGCACATGCTGGGCTCGGG
66 GAGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * *
19199705 CATGTGCTGGTGCTGCATTTTTCTTTGTCGGGGCATCATCGTCGGAGCATCGCCGGAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * *
19199770 CCCGCGGCAATGGGGTTTCGGTGATC-GGGGGGCCGGTGGGGGTGTGTGCACATGATGTGTGATG
195 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGTGATG
* *
19199834 GGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCT-AGAACTCACACCC
259 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCACACCC
19199898 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
323 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* **
19199963 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTATTTGAATTTTTTTGTGCA
388 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * * * *
19200028 TGCCAGCAAAATACAAGGATCACGTCTACCAAGTTT--GGCCAAATCTTCTTTCG-AGAAA-TTT
453 TGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
19200089 -AAAAATCCC-AACCGCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAAACGAGTCGTCTTACCA
518 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT-AGAAAACGAGTCGTCTTGCCA
*
19200152 TGAAACTTCACGTGAAGGCTTAAGGGACCATTG--TGAATTTACAAGCCATAAAAATTGCATTGG
582 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
19200215 CATGCAGAAATATGAAGATGTGCCTATACCCACCTACCACCCTATCAATCCATGGCTTGCGCATC
647 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
19200280 CCGTCTCTCAGGCCGGCGTAGTGCCTGCCCGTCCGCCAGCTCGCTCGTTTCGTCGGTTGGCTTAG
712 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * **
19200345 GCATACAGAGTTCTTTCCTAATCTGAGATCAGACCGGACAAAGGGTTGCGGCAGCAGGATCGATA
773 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-G----AGGGTTGCGGCAGCAGGATCGGCA
* * * * *
19200410 GCACACAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTCGCCCCTCCGGCTGGCTGAG
833 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
19200472 CGCCTGCACACTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCGAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
19200537 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
19200602 ATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAT
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * *
19200667 TGGCGGCATTGGGGTTCCAGCAATTGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGG
196 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGTGATGG
* * * *
19200732 GTGCAGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATTAAACCTCGAGAACTCACACCCCC
260 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
*
19200797 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGCGAC
325 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
19200862 TCTTTTTTCAAATGGTCATAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATA
390 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
19200927 CCAAAAAAAATACAAGGATCATGTCTACC-GGATTT-GGGCCAAAACTCCTTCCGAAAAAATTTT
455 CC-AAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
19200990 CAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCAT
518 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
19201055 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
583 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
19201120 ATCCAAAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAACC
648 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
19201185 CGTCTCTTTGGCCGGTGTAGTGCCCGCCGGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATA
713 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
19201250 CGGAGTTCATTCCCAGTCTAAGAT
778 CGGAGTTCATTCCCAGTCTAAGAT
19201274 TGGACTGGAC
Statistics
Matches: 13794, Mismatches: 2327, Indels: 1626
0.78 0.13 0.09
Matches are distributed among these distances:
824 4 0.00
825 209 0.02
826 119 0.01
827 16 0.00
828 2 0.00
829 99 0.01
830 439 0.03
831 26 0.00
832 2 0.00
833 7 0.00
834 68 0.00
835 19 0.00
836 5 0.00
837 14 0.00
838 3 0.00
839 13 0.00
840 9 0.00
841 4 0.00
842 1 0.00
843 4 0.00
844 3 0.00
845 2 0.00
846 2 0.00
847 5 0.00
848 5 0.00
850 7 0.00
851 10 0.00
852 12 0.00
853 6 0.00
854 14 0.00
855 14 0.00
856 118 0.01
857 12 0.00
858 10 0.00
859 6 0.00
860 10 0.00
861 5 0.00
862 8 0.00
863 7 0.00
864 5 0.00
865 10 0.00
866 12 0.00
867 60 0.00
868 8 0.00
869 11 0.00
870 1 0.00
871 17 0.00
872 702 0.05
873 5 0.00
874 7 0.00
875 398 0.03
876 74 0.01
877 464 0.03
878 24 0.00
879 21 0.00
880 462 0.03
881 16 0.00
882 18 0.00
883 18 0.00
884 24 0.00
885 26 0.00
886 187 0.01
887 75 0.01
888 11 0.00
889 61 0.00
890 7 0.00
891 91 0.01
892 507 0.04
893 453 0.03
894 774 0.06
895 95 0.01
896 876 0.06
897 1192 0.09
898 321 0.02
899 273 0.02
900 589 0.04
901 224 0.02
902 311 0.02
903 807 0.06
904 365 0.03
905 439 0.03
906 24 0.00
907 12 0.00
908 6 0.00
910 229 0.02
911 317 0.02
912 363 0.03
913 418 0.03
914 8 0.00
915 6 0.00
916 6 0.00
917 8 0.00
918 12 0.00
919 3 0.00
920 18 0.00
921 19 0.00
922 18 0.00
923 14 0.00
924 18 0.00
925 14 0.00
926 17 0.00
927 28 0.00
928 16 0.00
929 16 0.00
930 7 0.00
931 5 0.00
932 9 0.00
933 2 0.00
934 9 0.00
935 20 0.00
936 10 0.00
937 1 0.00
938 11 0.00
939 3 0.00
940 2 0.00
941 1 0.00
942 1 0.00
943 10 0.00
944 11 0.00
945 10 0.00
946 3 0.00
948 4 0.00
949 4 0.00
950 9 0.00
951 22 0.00
952 10 0.00
953 8 0.00
954 7 0.00
955 4 0.00
956 15 0.00
957 12 0.00
958 7 0.00
959 11 0.00
962 4 0.00
963 13 0.00
964 7 0.00
965 11 0.00
966 8 0.00
967 3 0.00
968 5 0.00
969 4 0.00
970 7 0.00
971 11 0.00
972 7 0.00
973 14 0.00
974 3 0.00
977 11 0.00
978 8 0.00
979 12 0.00
980 15 0.00
981 4 0.00
982 7 0.00
983 5 0.00
984 11 0.00
985 23 0.00
986 10 0.00
987 4 0.00
988 3 0.00
990 4 0.00
991 10 0.00
992 11 0.00
993 10 0.00
994 1 0.00
995 1 0.00
996 2 0.00
997 3 0.00
998 11 0.00
999 1 0.00
1000 10 0.00
1001 17 0.00
1002 9 0.00
1003 2 0.00
1004 9 0.00
1005 3 0.00
1006 7 0.00
1007 4 0.00
1008 16 0.00
1009 23 0.00
1010 15 0.00
1011 8 0.00
1012 3 0.00
1013 3 0.00
1015 3 0.00
1016 3 0.00
1017 12 0.00
1018 17 0.00
1019 22 0.00
1020 8 0.00
1021 6 0.00
1022 16 0.00
1023 17 0.00
1024 343 0.02
1025 420 0.03
1026 381 0.03
1027 584 0.04
1028 409 0.03
1029 599 0.04
1030 435 0.03
1031 429 0.03
1032 492 0.04
1033 395 0.03
1034 275 0.02
1035 360 0.03
1036 340 0.02
1037 298 0.02
1038 308 0.02
1039 351 0.03
1040 370 0.03
1041 254 0.02
1042 330 0.02
1043 321 0.02
1044 275 0.02
1045 309 0.02
1046 308 0.02
1047 238 0.02
1048 467 0.03
1049 153 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
GACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:19186270 original size:159 final size:159
Alignment explanation
Indices: 19185975--19186350 Score: 457
Period size: 159 Copynumber: 2.4 Consensus size: 159
19185965 GTGCCCGCCT
* * * * * * *
19185975 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTGATTCCCAATCTAAGATCAGAC
1 GCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
** * * * **
19186040 TAGACCAAGGGTTACGGCAGTAGGATCGACAGAGCACAGCGGGGGACCCGGTCGATCCCCGAGTT
66 TAGACCAAGGGTTACGGCAACAGGATCGACAGAACACAGAGAGGGACCCGACCGATCCCCGAGTT
* * * *
19186105 GTGCATCTCGACCCTCTGGTCGGTTGAGC
131 GCGCATCCCGACCCTCTGGCCGGCTGAGC
* * *
19186134 GCCCGTACGATCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCTAGTCTAAGATTAGAC
1 GCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
* * * *
19186199 TGGATCAAGGGTTACGGCAACAGGATCGGCAGAACACAGAGATGGACCCGACCGATCCCCG-GCT
66 TAGACCAAGGGTTACGGCAACAGGATCGACAGAACACAGAGAGGGACCCGACCGATCCCCGAG-T
*
19186263 TGCGCATCCCGCCCCTCTGGCCGGCTGAGC
130 TGCGCATCCCGACCCTCTGGCCGGCTGAGC
* * * **
19186293 GCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTAAG
1 GCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
19186351 CATACGGAGT
Statistics
Matches: 183, Mismatches: 33, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
158 1 0.01
159 182 0.99
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
TAGACCAAGGGTTACGGCAACAGGATCGACAGAACACAGAGAGGGACCCGACCGATCCCCGAGTT
GCGCATCCCGACCCTCTGGCCGGCTGAGC
Found at i:19186354 original size:26 final size:26
Alignment explanation
Indices: 19186324--19186373 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
19186314 GTTGACTTAG
* *
19186324 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19186350 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
19186374 GAGATCGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19188142 original size:26 final size:26
Alignment explanation
Indices: 19188106--19188157 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19188096 TTGACTTAGA
*
19188106 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTATAAG
*
19188132 CATACGGAGTTGATTCCCAGTATAAG
1 CATACGGAGTTCATTCCCAGTATAAG
19188158 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTATAAG
Found at i:19193377 original size:26 final size:26
Alignment explanation
Indices: 19193341--19193393 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19193331 GTTGACTTAG
*
19193341 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
19193367 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
19193393 G
1 G
19193394 ATCAAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Done.