Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 109 of 195
Found at i:19197835 original size:26 final size:26
Alignment explanation
Indices: 19197805--19197857 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19197795 GTTCACTTAG
*
19197805 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19197831 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19197857 G
1 G
19197858 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19198883 original size:903 final size:900
Alignment explanation
Indices: 19196919--19201300 Score: 6042
Period size: 900 Copynumber: 4.9 Consensus size: 900
19196909 GTTGACTTAG
* * * * * *
19196919 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACTGAGGGTTACGACAGCATATGCTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGG-
* * * * *
19196984 CTCGGGCATGTGCTAGTGCCGCATTTCTCTACGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
65 ATCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
19197049 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGAGCACACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
19197114 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCAC
19197179 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19197244 GGGGACACCTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19197309 TGCATGCCAAAAAAAATACAAGGATCACCTTTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAA
* * *
19197374 ATTTAAAAAAATCCCTAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCTAACCGCAAAAAG-TTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19197439 GCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19197504 TTGACACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
19197569 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGCCCGCCCTCTCATTTCGT
648 CATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCG--C-C-CGCCCG----CTCGTTTCGT
** *
19197634 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGAGTTGCTA-C
704 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-AGC
* * *
19197698 AGCAAGATTGACAGCACGCAGAGGAGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTG
768 AGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTG
* * * * *
19197763 ACCGGCTAAGCGCCCGTACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTTCCAGTC
833 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
19197828 TAA
898 TAA
* * * *
19197831 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCAAGGGTTGTGGCAACACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCT-G
* * * *
19197895 GATCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCAGAG
64 GATCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
19197960 AACCTGATCGACGGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGTGGGTGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGG-GGGTGTGCGCACATGATGT
** * * * *
19198025 GCTTTGGGTGCTGGTTCTTGGCCATTATATTGGCCCCCTATTCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCA
*
19198090 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19198155 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19198220 GTGCATGCCAACAAAAATTCAAGGATCACCT-TACCAAGTTTGGGGCCAAAACTACTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAA
* * * * *
19198284 AATTTTAAAAAATCCCTAAGCACAAAAAGTTCTGAAAATCGTGAAAAGTAGAAAATGAGTCGTCT
453 AATTTTAAAAAATCCCTAACCGCAAAAAGTT-TAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * * *
19198349 TGCCATCAAACTCCACGTGAAGGCTTAAGGTACCATTGTACGAATTTACAAGCCATAATAATGCC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19198414 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCTCCCTATCAATCCACGGCTTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* **
19198479 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCAGCCCGCCCACCCGCCCTTTCGTTTCGTCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* *
19198544 CTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGAT
* * * * *
19198609 CGGCAGCATGCAGAGGGGGACCCTG-TCGATCCCCAGCTTACGCATCCCGCCCCTCTAGCCGGCT
776 CGACAGCACGCAGAGGGGGACCC-GACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
19198673 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
840 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19198734 GCGTACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCT-GG
* * * ** * *
19198799 AGCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGACCATCGTCGGAGA
65 ATCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
19198864 ACCTGACCGGTGACATTGGGGTTCCAGCGATCGAGGGGGTCGGGGGGGTGTGCGCACTTGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
19198929 CGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTAT-CTCTCATCAAACCTCCAGAACTCA
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGC-CTCATCAAACCTCGAGAACTCA
*
19198993 CACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19199058 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTG
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *** *
19199123 GTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAAGCCATCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAA
* *
19199188 AATTTTAAAAAAT-CCTGAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTC
453 AATTTTAAAAAATCCCT-AACCGCAAAAAGTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
19199252 TTGCCAAGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * *
19199317 CATTGGCATGCAGAAATATGTAGATCTTCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** ** * *
19199382 CGCATCCCATCTCTTTGGCCAACGTAGT---GCCCTTCCGCCCGCCCACTCGTTTCGTCAGTTGG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** * *
19199444 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCAGTAGTAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGAT
** * * *
19199509 CGGTAGCACGCAGAGGGGGACTCGACCGATTCCCAGCCTGCGCATCCCGCCCCTCTGGCCGGCTG
776 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
19199574 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
841 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19199634 GCATACGAAGTTCAATCCCAGTCTAAGATC-AATCCAGACCGAGGGCTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAA-CCGGACCGAGGGTTGCGGCAGCACATGCT-G
* * * * *
19199698 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGTCGGGGCATCATCGTCGGAGCATCGCCGGAG
64 GATCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
19199763 AACCTGACCCGCGGCAATGGGGTTTCGGTGATCGGGGGGCCGGTGGGGGTGTGTGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGG-GGGGGTGTGCGCACATGATGT
* * *
19199828 GTGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCTAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCA
19199893 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* **
19199958 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTATTTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19200023 GTGCATGCCAGC-AAAATACAAGGATCACGTCTACCAAGTTT--GGCCAAATCTTCTTTCG-AGA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAA
*
19200084 AA-TTT-AAAAATCCC-AACCGCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAAACGAGTCGTC
453 AATTTTAAAAAATCCCTAACCGCAAAAAG-TTTAAAAATCGTGAAAAAT-AGAAAACGAGTCGTC
* *
19200146 TTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG--TGAATTTACAAGCCATAAAAATTG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
19200209 CATTGGCATGCAGAAATATGAAGATGTGCCTATACCCACCTACCACCCTATCAATCCATGGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19200274 CGCATCCCGTCTCTCAGGCCGGCGTAGTGCCTGCCCGTCCGCCAGCTCGCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * ** *
19200339 GCTTAGGCATACAGAGTTCTTTCCTAATCTGAGATCAGACCGGACAAAGGGTTGCGGCAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGA
* * * * * * * *
19200404 TCGATAGCACACAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTCGCCCCTCCGGCTGGCT
775 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
19200469 GAGCGCCTGCACACTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCGAGTCTAA
840 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19200530 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCT-GG
* * * * *
19200595 CTCAGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
65 ATCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
** * * *
19200660 ACCTGATTGGCGGCATTGGGGTTCCAGCAATTGGGGGGGCCGGGGGGGGTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGA-TCGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* *
19200725 GCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATTAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCA
19200790 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19200855 TGGCGACTCTTTTTTCAAATGGTCATAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19200920 GTGCATACCAAAAAAAATACAAGGATCATGTCTACC-GGATTT-GGGCCAAAACTCCTTCCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTACTTCCGAAA
* * * *
19200983 AAATTTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTC
452 AAATTTTAAAAAATCCCTAACCGCAAAAAGTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTC
19201048 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19201113 CATTGGCATC-CAAAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 CATTGGCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
19201177 GCGCAACCCGTCTCTTTGGCCGGTGTAGT---GCCCGCCGGCCCGCCCGTTCGTTTTGTCGGTTG
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * * *
19201239 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCTGCAGCA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCA
19201301 CATGCTTGGG
Statistics
Matches: 3076, Mismatches: 356, Indels: 88
0.87 0.10 0.03
Matches are distributed among these distances:
892 104 0.03
893 27 0.01
894 58 0.02
895 5 0.00
896 329 0.11
897 234 0.08
898 27 0.01
899 53 0.02
900 625 0.20
901 4 0.00
902 65 0.02
903 581 0.19
904 334 0.11
907 5 0.00
908 1 0.00
909 1 0.00
910 4 0.00
911 253 0.08
912 364 0.12
913 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGA
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAAT
TTTAAAAAATCCCTAACCGCAAAAAGTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19199644 original size:26 final size:26
Alignment explanation
Indices: 19199608--19199660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19199598 GTTGACTTAG
* *
19199608 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
19199634 GCATACGAAGTTCAATCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
19199660 G
1 G
19199661 ATCAATCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:19200535 original size:26 final size:26
Alignment explanation
Indices: 19200505--19200556 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19200495 TTGACTTAGT
*
19200505 CATACGGAGTTCATTCCGAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19200531 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19200557 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:19202152 original size:26 final size:27
Alignment explanation
Indices: 19202110--19202160 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
19202100 GACATAGGCA
19202110 TACGGAGTTTCATTCCCAATCTAAGCG
1 TACGGAGTTTCATTCCCAATCTAAGCG
19202137 TACGGAG-TTCATTCCCAATCTAAG
1 TACGGAGTTTCATTCCCAATCTAAG
19202161 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (27 bp):
TACGGAGTTTCATTCCCAATCTAAGCG
Found at i:19203431 original size:900 final size:901
Alignment explanation
Indices: 19201245--19204615 Score: 4767
Period size: 895 Copynumber: 3.8 Consensus size: 901
19201235 GTTGGCTTAG
* ** *
19201245 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCTGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGC-TGG
* * * *
19201310 GCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGG----C-AC----CATCGTCGTAGAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCCATCGACGGAGCATCGTCGGAGAA
* * ** * * *
19201366 CCTG-CCCGACGACATTAGGGTTTCGATGATCGGGGGGG-CGAGGGGGGTATGCACGCATGATGT
130 CCTGACCAGACGACATTAGGGTTCCGGCGATCGGGGGGGACGCGGGGGGTGTGCACACATGATGT
* * * * **
19201429 GCGATGGGTGCTAGTGCCTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTGGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
* *
19201494 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAACTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19201558 TGGGGACACATTTTTCAAATGTTCAGAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTA
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTA
* ** *
19201623 TGCATGCCAAAAAAAATACAACAATCACGTCTACCAAGTTT-GGGCCAAAACTTCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
19201687 ATTTGAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATTAAAAAATGAGTCGTCT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAA-TAGAAAACGAGTCGTCT
* *
19201752 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGCATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19201817 ATTGTCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGC
* * * * * * *
19201882 GCATCCCATTTCTCTAGCCGACATAATGCCCG--C-CCACCCGCCCGCTCATTTCGTCGGTTGGC
649 GCATCCCGTCTCTCTGGCCGACGTAGTTCCCGCCCGCCGCCCGCCCGCTCATTTCGTCGGTTGGC
* ** * ** * ** *
19201944 TTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCTGACCAAAGGTTACGGTAGTACGATC
714 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGTAGGATC
* *** *
19202009 AGTAGCATGTAGAGGGGGACCCGACCGATCCTCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGA
779 GGTAGCACACAGAGGGGGACCCGACCGATCCCCGA-TTGTGCATCCCGCCCCTCTGGCCGGCTGA
* *
19202074 GCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTTCATTCCCAATCTAA
843 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG-TTCATTCCCAATCTAA
* * * * *
19202134 GCGTACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
** * * *
19202199 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGTGCCATCGTCGGAGCATCG-CTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCCGGG-GCCATCGACGGAGCATCGTC-GGAG
* * * * *
19202263 AACCTAATC-GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGCGGGGGGGTGTGCACACATGA
128 AACCTGACCAGACGACATTAGGGTTCCGGCGATCGGGGGGGACGC-GGGGGGTGTGCACACATGA
*
19202327 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCTAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAC
* * *
19202392 TCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
19202457 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
19202522 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGAA
387 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
19202587 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
19202652 GC-TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAAT
517 -CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19202716 GGCATTGGCATGCAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCGATCAATCAACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCT
* * * *
19202781 TGCACATCCTGTCTCTCTGGCCGACGTAGTTCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGTT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTTCCCGCCCGCC-GCCCGCCCGCTCATTTCGTCGGT
*
19202846 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGTAG
710 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGTAG
* * * *
19202911 GATCGGTAGCACACAGAAGGGGACCCGACTGATCCCCGATTGCGCATCCCGCCCTTCTGGCCGGC
775 GATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGATTGTGCATCCCGCCCCTCTGGCCGGC
* * * * *
19202976 TGAGTGCCCGCACGCTTGCTTCATAGGTTGACTTAGGCTTACGGAGTTCATTCCCAATCTAA
840 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * *
19203038 GCATACGGAGTTCATTCCCAGTCTAAAATTGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19203103 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCCCCGGGAAACCGTCGACAGAGCGTCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGG--GCCATCGACGGAGCATCGTCGGAGA
* * * * *
19203168 ACTTGACCAG-CGACATT-GGTGTTCCGTCAATC-GGGGGG-C-CGGGGGGTGTGCGCACACGAT
129 ACCTGACCAGACGACATTAGG-GTTCCGGCGATCGGGGGGGACGCGGGGGGTGTGCACACATGAT
19203228 GTGCGATGGGTGCTGGT-CTTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAC
193 GTGCGATGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAC
* * *
19203292 TCAAACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
19203357 AAATGGGGACACTTTTTTCGAATGGTCACAAAATATTGTACACTTCGATTTTTTAGCTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
19203422 TTGTGCATGCCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCTAAAATTCCTTCCAAA
387 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
19203487 AAAATTTTGAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG-AAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
19203551 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
19203616 GCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCTGATCGATCCATGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTT
** *
19203681 GCGCATCTTGTCTCTCTGGCCGACGTAGTTCCCG--C-CCGCCCGTCCGCTCATTTCGTCGGTTG
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTTCCCGCCCGCCGCCCGCCCGCTCATTTCGTCGGTTG
* *
19203743 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGGAGGGTTGTGGCAGCAGG
712 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGTAGTAGG
*
19203807 ATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGGTTGTGCATCCCGCCCCTCTGGCCGGCT
776 ATCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGATTGTGCATCCCGCCCCTCTGGCCGGCT
*
19203872 GAGCGCCCGCACGCTCGTTTCATGGGTTTACTTAGGCATACGGAGTTCATTCCCAATCTAA
841 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
19203933 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
19203998 CTCGGGCATGTGCTGGTGCCGCATTTTTCTACCCCGGGGCTCCATTGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGG--CCATCGACGGAGCATCGTCGGAGA
* * * * * *
19204063 ACTTGAACAG-CGGCATTAGGGTTCTGGCGATC-GGGGGGAC-CGGGGGGTGTCCGCACATGATG
129 ACCTGACCAGACGACATTAGGGTTCCGGCGATCGGGGGGGACGCGGGGGGTGTGCACACATGATG
**
19204125 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTGTCAAACCT-TGAGAACT
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACT
* *
19204189 CACACTCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
19204254 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGTGTTTTTAGCTGAGTTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTT
* * **
19204319 TTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCGAA
387 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * *
19204384 AAAATTTTGAAAAATCCCAAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACAAGTAGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
19204449 CTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTATATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
19204514 GCATTGCCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTT
*
19204579 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTTCCCGCCC
19204616 TCACGTCTAC
Statistics
Matches: 2215, Mismatches: 228, Indels: 67
0.88 0.09 0.03
Matches are distributed among these distances:
888 32 0.01
889 56 0.03
890 1 0.00
894 2 0.00
895 345 0.16
896 197 0.09
897 115 0.05
898 163 0.07
899 203 0.09
900 313 0.14
901 81 0.04
902 316 0.14
903 76 0.03
904 142 0.06
905 67 0.03
906 106 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCCATCGACGGAGCATCGTCGGAGAAC
CTGACCAGACGACATTAGGGTTCCGGCGATCGGGGGGGACGCGGGGGGTGTGCACACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTAT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTTCCCGCCCGCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGTAGGATCGG
TAGCACACAGAGGGGGACCCGACCGATCCCCGATTGTGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
Found at i:19203937 original size:26 final size:26
Alignment explanation
Indices: 19203907--19203959 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19203897 GTTTACTTAG
19203907 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19203933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19203959 G
1 G
19203960 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19204826 original size:269 final size:270
Alignment explanation
Indices: 19204346--19204884 Score: 855
Period size: 269 Copynumber: 2.0 Consensus size: 270
19204336 AATACAAGGA
* *
19204346 TCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGTAA
1 TCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGCAA
*
19204411 AAAGTTTTGAAAATTGTGAAAAATAGAAAACAAGTAGTCTTGCCATGAAACTTCACGTGAAGGCT
66 AAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTAGTCTTGCCATGAAACTTCACGTGAAGGCT
*
19204476 TAGGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGCCAAGCAAAAATATGAAGATG
131 TAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGCCAAGCAAAAATATGAAGATG
* *
19204541 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
196 TGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTA
19204606 GTGCCCGCCC
261 GTGCCCGCCC
* * * ** *
19204616 TCACGTCTACCAAGTTTGGGGCTAAAACTTCTTCCGAAAAAATTTTGAAAAATCCTGAACTGCAA
1 TCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGCAA
* * * *
19204681 AAGGTTTTGAAAATCGTGAAAAATA-AAAACGAGTCGTCTTGCCATGTAACTTCACGTGAAGGCT
66 AAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTAGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * * *
19204745 TAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
131 TAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGCCAAGCAAAAATATGAAGATG
* *
19204810 TGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCTGTCTCTCTGGCCGGCGTA
196 TGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTA
*
19204875 GTTCCCGCCC
261 GTGCCCGCCC
19204885 GCCCGCTCAT
Statistics
Matches: 245, Mismatches: 24, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
269 165 0.67
270 80 0.33
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (270 bp):
TCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGCAA
AAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTAGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGCCAAGCAAAAATATGAAGATG
TGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTA
GTGCCCGCCC
Found at i:19205111 original size:26 final size:26
Alignment explanation
Indices: 19205072--19205124 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19205062 GTTGACTTAG
* *
19205072 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGACTTCATTCCCAATCTAA
* *
19205098 GCATACAGACTTCATTCCTAGTCTAA
1 GCATACAGACTTCATTCCCAATCTAA
19205124 G
1 G
19205125 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAATCTAA
Found at i:19207011 original size:26 final size:26
Alignment explanation
Indices: 19206975--19207027 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19206965 GTTGACTTAG
19206975 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19207001 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19207027 G
1 G
19207028 ATCGAACCGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19207468 original size:26 final size:26
Alignment explanation
Indices: 19207438--19207490 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19207428 GTTGACTTAG
19207438 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19207464 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19207490 G
1 G
19207491 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19208014 original size:26 final size:26
Alignment explanation
Indices: 19207978--19208030 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19207968 GTTGACTTAG
*
19207978 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19208004 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19208030 G
1 G
19208031 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19209283 original size:26 final size:26
Alignment explanation
Indices: 19209247--19209299 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19209237 GCTGATTTAG
19209247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19209273 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19209299 G
1 G
19209300 ATCGAGGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19210170 original size:26 final size:26
Alignment explanation
Indices: 19210134--19210186 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19210124 GTTGACTTAG
19210134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19210160 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19210186 G
1 G
19210187 ATCTAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19211064 original size:26 final size:26
Alignment explanation
Indices: 19211027--19211078 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19211017 GTTGACTTAG
* *
19211027 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
19211053 GCATACGAAGTTCTTTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
19211079 AATCAGAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:19211652 original size:903 final size:900
Alignment explanation
Indices: 19207032--19212150 Score: 4915
Period size: 893 Copynumber: 5.7 Consensus size: 900
19207022 TCTAAGATCG
** * *
19207032 AACCGTAAAAAGTTTTGAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
1 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
19207097 TGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
66 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* * *
19207162 TAAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCCCGTCTCTCTGG
131 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
19207227 CCGACGTAGTACCCGCCCGCTGCC-CGCCCGCTCGTTTCGTCGGTTGGCCTAGGCATACGGAGTT
196 CCGGCGTAGTGCCCGCCCGC--CCGCCCCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** ** * * * *
19207291 CATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATC-AGTAGTACACAGTGG
259 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGA-CAGCACACAGAGG
* * * * ** * *
19207355 GGGACCCGACCGATCCTTGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGGGCCCGCACGCTTG
323 GGGACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCTGCACGCTCG
* *
19207420 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
388 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
*** * * *
19207485 TCTAAGATCAGACCAGACTGA-GGTTGCAGCAGCACATGCTGGGCTCGGGCATATGCTGCGT-CA
453 TCTAAGATCAGAATGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTG-GTGC-
* * * ** * **
19207548 CAT-T-TTTCTTTGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGACATTAA
515 CATATGTTTCTTCGCCGGGGCACCATCG-CAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
** * * * * *
19207611 GGTTCCGGTGATCGGAGGGGTCGGGGGGGTTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
579 GGTTCCGACGATTGGGGGGGCCGGGGGGG-TGTACGCACATGATGTGCGATGGGTGCTGGTACTT
** * * * *
19207676 GGCATTTCTATTGGCCCCTTATCCCTGATCAAACCTCAAGAACTCACATCCCCTTAAAGAGCATT
643 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* * * * * * *
19207741 TGAGATTTTATAGGTTTTCTGCTAGTAGCAATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAA
708 TGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
19207806 TGATCACAAAATCTTGTACACTTCAAGTTTTTACCTGAATTTTTTTGTGCATGCCAAGAAAAATA
773 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
** * * ****
19207871 CAAGGATCACGTCTATTAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATTTTG
838 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
** * ** * * * * * *
19207934 AACC-TAAGCA-TTTGGGCCAAAA-C-TCG---TTTCG----TGGGTTGACTTAGGCATACGGAG
1 AACCGTAAAAAGTTT---CAAAAATCAT-GAAAAATAGAAAACGAGTCGTCTT-GCCAT---GA-
** * * * * ** * ** ** ***
19207988 TTCATTCCCAGTCTAA-GCATACAGAGTTCATTCCCAGTCT-AAGAT-C-AGACCGGACCGA-GG
57 AAC-TTCAC-GT-GAAGGCTTA-AGGGACCATT----GTATGAATTTACAAG-CCATAAAAATGG
* * * * * * *** ** * **** * ** * *** **
19208048 --TT-GCA-GCA-ACACAT---GCTGGGCTTGGGCATATGCTGGTGCCGTAT-TTTTCTTTGCCA
113 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA-CCTACCACCCTATCGATCCACGGCTT
* * * * * * ** * * * * *** ** * *
19208104 GGGCA--CCATCGC-CGGAGCATCGTCGGAGAACCTGACCG-GCG-GCATTAGGGTTCCGAT-GA
177 GCGCATCCCGTCTCTCTG-GC--CGGCGTAGTGCCCGCCCGCCCGCCCCCGATCGTTTCG-TCGG
* * * * * * * ** ** * * **
19208163 TTGAG---GGGGAT-GGGGGTGTGC--GCACATGATGTGCGATGGGTGCCGGTACTTG-GCCCTT
238 TTG-GCTTAGGCATACGGAGT-T-CATTCCCA-G-TCTAAGATCAG-ACCAG-AC-TGAG--GGT
* * *** * * * ***** * * * ***
19208221 ATATTGGCCCCCTATCCCTCATC-AAACCTCGACA-ACTCACACCCTATCGATCCCCGACTTGTA
293 -T-GTGG----C-A-GCAGGATCGACAGCAC-ACAGAGGGGGACCCGATCGATCCCTGGCTTACG
* * * * *
19208284 CATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTGGGTATACGG
349 CATCCCGCCCCTCTGGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
19208349 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA-AACCGGACCGAGGGT
414 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAA-TGGACCGAGGGT
* * * ** * *
19208413 TGCGGGAGCACATGCTGGGCAT-GATCATGTGTTGGTGCTGTATTTTTCTTCACCGGGGCACCAT
478 TGCGGCAGCACATGCTGGGC-TCG-GCATGTGCTGGTGCCATATGTTTCTTCGCCGGGGCACCAT
* ** * * * *
19208477 CGTCGGAGCATCGTCGGAGAACCTGATTGGCGGTATTGGGGTTCCGGCGATCGGGGGGACCGGGG
541 CG-CAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGG
* * * * *
19208542 GGTTGTTCGCACATAATGTGCGATGAGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTC
605 GGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* **
19208607 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAATA
670 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATA
* *
19208672 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATGTTGTACACTTCGAG
735 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * * *
19208737 TTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCAAGTGTACCATGTTTGAGG
800 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* **
19208802 CCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTG
865 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
* *
19208838 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
1 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
19208903 TCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
66 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* *
19208968 TGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCAC-GCTTGTGCATCCCGTCTCTCTGG
131 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
19209032 CCGGTGTAGTGCTCGCCCGCCCGCCCGCTCGCCCGCTCG-TTCGTCGGTTGGCTTAAGCATACGG
196 CCGGCGTA--G-T-GCCCGCCCGCCCGC-C-CCCGATCGTTTCGTCGGTTGGCTTAGGCATACGG
* * ** *
19209096 AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGCAG
255 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAG
* * * * **
19209161 AGGGGGACCCG-GCTGATCCCTGGCTTGCGCATCCCGCCCCTTTGGCCGGCTAAGC-GTTCGCAC
320 AGGGGGACCCGATC-GATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCT-GCAC
* * * *
19209224 GCTCGTTTCGAGGGCTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
383 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
19209289 CCTAGTCT---A--AG-AT----CGAGGGTTGCAGCAGCACATGCTGGGCTCACGCAGGTGCTGG
448 CCCAGTCTAAGATCAGAATGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGG
* * *
19209344 TGCTGCAT-T-TTTCTTTGCCTGGGCACCATCGTCAGAGCACCGTCGGAGAACCTGACCGGCGGC
512 TGC--CATATGTTTCTTCGCCGGGGCACCATCG-CAGAGCATCGTCGGAGAACCTGACCGGCGGC
* * * * * *
19209407 ATTGGGGTTTCGATGA-TCGGGGGGTC-GGGGGGTGTGCGCACAT-ATGTGCGATGGGTTCTGGT
574 ATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGT
* *
19209469 ACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAG
639 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
* *
19209534 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTT
704 CATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
19209599 CAAATGGTGACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAA
769 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
19209664 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
834 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
*
19209729 CG
899 CA
*
19209731 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATC-AGTTGTCTTGCCATGAAACTTCAC
1 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCAC
19209795 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
65 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
* * * *
19209860 ATGAAGATGTGCCTAAATCCTCCTACCACCCTATCAATCCACGGCTTGCGCATCTCGTCTCTCTG
130 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * *
19209925 GTCGACGTAGTGCCCGCCCGCCCG--CCCGTTCGTTTCGTC-ATGTGGCTTAGGCTTACAGACTT
195 GCCGGCGTAGTGCCCGCCCGCCCGCCCCCGATCGTTTCGTCGGT-TGGCTTAGGCATACGGAGTT
* * * * *
19209987 TATTCCCAGTCTAAGATCAGA-CGGACTGAGGGTTGCGACAGCAGGATCGACAGGACACAGAGGG
259 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGG
* * * * ** * * * *
19210051 GGACCCGGTCGATCCTTGGCTTACGTATCCCGGCCCTCTGGATGGCTGAGCGCCCTACACGTTCT
324 GGACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGC-ACCTGCACGCTCG
*
19210116 TTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
388 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * * *
19210181 TCTAAGATCTA-ACTGGACTAAAGGCTTTCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
453 TCTAAGATC-AGAATGGAC-CGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGC
* * * * * *
19210245 CACA-GTTTTCTTCGTCGGGG---CA---C----CATCGTCGGAGCACCTGATCGGTGGTATTGG
515 CATATG-TTTCTTCGCCGGGGCACCATCGCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * * * * *
19210299 GGTTCCGACGATCGGGGGGGCCGGGTGGGAGTGCGCACATGATGTGTGATGGGTGCTGGTACTAG
579 GGTTCCGACGATTGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
19210364 GCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTGACACCCCCTTAAAGAACATTT
644 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
* *
19210429 GAGATTTTAGAGGTTTGCTACCAATAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAAT
709 GAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
19210494 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAA-AAAAATAG
774 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
** *
19210558 AAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCA
839 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
* *
19210620 AACCGTAAAAAGTTTCAAAAATCATGAAAAAGAGAAAACGAGTCGTCTTGACATGAAACTTCACG
1 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * ** * *
19210685 TGAAAGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGTTATTGGCATGCAGAAATA
66 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
** *
19210750 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCAGG
131 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
19210815 CCAGTGTAGTGCCCGCCAGCCCGCTCACCCGATCGTTTGGTCGGTTGGCATAGGTATACGGAGTT
196 CCGGCGTAGTGCCCGCCCGCCCGC-C-CCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** * *
19210880 CATTCCCAGTCTAAGATTAGATCAGACCAAGGGTTGTGGTAGCAGGATCGACAGCACACAGAAGG
259 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGG
* * * * *
19210945 GGACCCGATTGATCCCTGGCTTACGCATCCCGCCCCCCTGGTCGACTGAGCACCTGCACGCTCTT
324 GGACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCTGCACGCTCGT
* * *
19211010 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCTTTCCCAAT
389 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
19211075 CTAAAATCAGAATGGACCGAGAGTTGCGGCAACACATGCT-GACTCGGTCATGTACTGGTGCCAT
454 CTAAGATCAGAATGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG-CATGTGCTGGTGCCAT
* * ** *
19211139 ATGTTTCTTTGCCGGGGCACCATCGCAATAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGT
518 ATGTTTCTTCGCCGGGGCACCATCGC-AGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
* * *
19211204 TCTGACGATTGGGGGGGCCGGGGGGGTCTACGCACATGATGTGCGATGGGTGCTGCTACTTGGCC
582 TCCGACGATTGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
19211269 CTTATATTGGCCCCCCATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGATCATTTGAG
647 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * * *
19211334 ATATTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGAGGACATTTTTTTCAAATGGT
712 ATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * * *
19211399 CATAAAATCTTATACACTTCAAGTTTGTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAG
777 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * *
19211464 GATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCAAAAAAATTTTAAAATATCCCA
842 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
* *
19211523 AACCGTAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGCAACTTCACG
1 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
19211588 TGAAGGCTTAAAGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
66 TGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
*
19211652 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTG
130 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
19211717 GCCGGCGTAGTGCCTGCCCGCCCG----C-A-CGTTTCATCAGTTTGCTTAGGCATACGGAGTTC
195 GCCGGCGTAGTGCCCGCCCGCCCGCCCCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * ** *
19211776 ATTCCCAATCTAAGATTAGACCAGACTGAGGGTTGTGGTAGCAGGATCGGTAGCACGCAGAGGGG
260 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGG
* ** ** **
19211841 GACCCAATCGAT-CCTCAACTTGTGCATCCTACCCCT-TGGCCGGCTGAAGCATCCATG--CGCT
325 GACCCGATCGATCCCT-GGCTTACGCATCCCGCCCCTCTGGCCGGCTG-AGCA-CC-TGCACGCT
* * * *
19211902 CGTTTCGTGGGTTGACATAGGCATACGAAGCTCATTCCCAGTCTAAGCATACGTAGTTCATTCCC
386 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
** * * * * *
19211967 AGTCTAAGATCAGACCGGACTGGGGGTTACGACAGCACATGCTGGGCTCAGCTATGTGCTGGTGC
451 AGTCTAAGATCAGAATGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGC-ATGTGCTGGTGC
** * * * * * *
19212032 CGCATTTTTCTTCGCTGGGGTACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGTGGCATTGG
515 CATATGTTTCTTCGCCGGGGCACCATCG-CAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * * *
19212097 GGTTCCAACGATTGGGGGGGCCAGCGGGGTGTACGTACATGATGTGCGATGGGT
579 GGTTCCGACGATTGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGT
19212151 TCAAATGGTC
Statistics
Matches: 3411, Mismatches: 648, Indels: 322
0.78 0.15 0.07
Matches are distributed among these distances:
886 83 0.02
887 145 0.04
888 9 0.00
889 275 0.08
890 217 0.06
891 39 0.01
892 26 0.01
893 568 0.17
894 145 0.04
895 224 0.07
896 247 0.07
897 14 0.00
898 50 0.01
899 11 0.00
900 10 0.00
901 19 0.01
902 265 0.08
903 418 0.12
904 318 0.09
905 95 0.03
906 123 0.04
907 10 0.00
909 17 0.00
910 14 0.00
911 18 0.01
912 3 0.00
913 7 0.00
914 4 0.00
915 5 0.00
916 10 0.00
917 10 0.00
918 5 0.00
919 7 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCCGCCCGCCCCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGG
ACCCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCTGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCAGAATGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCATATG
TTTCTTCGCCGGGGCACCATCGCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
ACGATTGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
Found at i:19211962 original size:26 final size:26
Alignment explanation
Indices: 19211922--19211974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19211912 GTTGACATAG
19211922 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
* *
19211948 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
19211974 G
1 G
19211975 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:19213457 original size:684 final size:684
Alignment explanation
Indices: 19212150--19213547 Score: 2733
Period size: 684 Copynumber: 2.0 Consensus size: 684
19212140 GTGCGATGGG
19212150 TTCAAATGGTCACAAAATCTTGTACACTTCTACCAAGTTTTGGGGGAAAACTCCTTCTGAAAAAA
1 TTCAAATGGTCACAAAATCTTGTACACTTCTACCAAGTTTTGGGGGAAAACTCCTTCTGAAAAAA
19212215 TTTTTAAAAATCCCAAACCGCAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
66 TTTTTAAAAATCCCAAACCGCAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
19212280 CCATGAAACTTAACGTGAAGGCTTAAGGTACCGTTGTATGAATTTACAAGACATAAAAATGGCAT
131 CCATGAAACTTAACGTGAAGGCTTAAGGTACCGTTGTATGAATTTACAAGACATAAAAATGGCAT
19212345 TGGAACGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCCATCGAACCACGGCTTGCGC
196 TGGAACGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCCATCGAACCACGGCTTGCGC
19212410 ATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGTACTCTCGTTTCGTGGGTTGACTTAGG
261 ATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGTACTCTCGTTTCGTGGGTTGACTTAGG
* *
19212475 CATACGGAGTTCATTGCCAGTCTAAGCAGACGAAGTTCATTCCCAGTCTAAGATGATACCGGACC
326 CATACGGAGTTCATTCCCAGTCTAAGCAGACGAAGTTCATTCCCAGTCTAAGATCATACCGGACC
19212540 GAGGGTTACAGTAGCACATGCTCGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGC
391 GAGGGTTACAGTAGCACATGCTCGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGC
19212605 ACCATCGTCGAAGCATCGTCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCAATTAGGGGCCG
456 ACCATCGTCGAAGCATCGTCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCAATTAGGGGCCG
*
19212670 GGGGGTGTGCGGACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCTTATCCC
521 GGGGGTGTGCGGACATGATATGTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCTTATCCC
19212735 TCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
586 TCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
19212800 TAGCCATTAACGTGTCTGAATTGGAGACACTTTT
651 TAGCCATTAAAGTGTCTGAAATGGAGACACTTTT
19212834 TTCAAATGGTCACAAAATCTTGTACACTTCTACCAAGTTTTGGGGGAAAACTCCTTCTGAAAAAA
1 TTCAAATGGTCACAAAATCTTGTACACTTCTACCAAGTTTTGGGGGAAAACTCCTTCTGAAAAAA
19212899 TTTTTAAAAATCCCAAACCGCAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
66 TTTTTAAAAATCCCAAACCGCAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
19212964 CCATGAAACTTAACGTGAAGGCTTAAGGTACCGTTGTATGAATTTACAAGACATAAAAATGGCAT
131 CCATGAAACTTAACGTGAAGGCTTAAGGTACCGTTGTATGAATTTACAAGACATAAAAATGGCAT
19213029 TGGAACGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCCATCGAACCACGGCTTGCGC
196 TGGAACGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCCATCGAACCACGGCTTGCGC
19213094 ATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGTACTCTCGTTTCGTGGGTTGACTTAGG
261 ATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGTACTCTCGTTTCGTGGGTTGACTTAGG
19213159 CATACGGAGTTCATTCCCAGTCTAAGCAGACGAAGTTCATTCCCAGTCTAAGATCATACCGGACC
326 CATACGGAGTTCATTCCCAGTCTAAGCAGACGAAGTTCATTCCCAGTCTAAGATCATACCGGACC
*
19213224 GAGGGTTACGGTAGCACATGCTCGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGC
391 GAGGGTTACAGTAGCACATGCTCGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGC
19213289 ACCATCGTCGAAGCATCGTCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCAATTAGGGGCCG
456 ACCATCGTCGAAGCATCGTCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCAATTAGGGGCCG
19213354 GGGGGTGTGCGGACATGATATGTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCTTATCCC
521 GGGGGTGTGCGGACATGATATGTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCTTATCCC
19213419 TCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
586 TCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
19213484 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
651 TAGCCATTAAAGTGTCTGAAATGGAGACACTTTT
19213518 TTCAAATGGTCACAAAATCTTGTACACTTC
1 TTCAAATGGTCACAAAATCTTGTACACTTC
19213548 GAGTTTTTAG
Statistics
Matches: 707, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
684 707 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (684 bp):
TTCAAATGGTCACAAAATCTTGTACACTTCTACCAAGTTTTGGGGGAAAACTCCTTCTGAAAAAA
TTTTTAAAAATCCCAAACCGCAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTAACGTGAAGGCTTAAGGTACCGTTGTATGAATTTACAAGACATAAAAATGGCAT
TGGAACGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCCATCGAACCACGGCTTGCGC
ATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGTACTCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCAGACGAAGTTCATTCCCAGTCTAAGATCATACCGGACC
GAGGGTTACAGTAGCACATGCTCGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCCGGGGC
ACCATCGTCGAAGCATCGTCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCAATTAGGGGCCG
GGGGGTGTGCGGACATGATATGTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCTTATCCC
TCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGAGACACTTTT
Found at i:19214310 original size:732 final size:733
Alignment explanation
Indices: 19213323--19214796 Score: 2134
Period size: 732 Copynumber: 2.0 Consensus size: 733
19213313 AACCTGACCG
**
19213323 ACGGCATTAGGGTTCCGGCAATTAGGGGCCGGGGGGTGTGCGGACATGATATGTGATGGGTGCTG
1 ACGGCATTAGGGTTCCGGCAATTAGGGGCCGGGGGGTGTGCGGACATGATATACGATGGGTGCTG
* * * * *
19213388 GTACTTGGCCCTTCTATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAG
*
19213453 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTT
*
19213518 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTGTTTTGTGCATGCCAAAA
196 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTGTTTTATGCATGCCAAAA
* * *
19213583 AAAACATAAGTATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA-TTATAAAAAA
261 AAAACACAAGTATCACGTCCACCAAGTTTGGGGACAAAACT-CTTTCCAAAAAAGTTATAAAAAA
* * *
19213647 TCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCTTGAAACT
325 TCCCAAACTACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
* * * *
19213712 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTTGCACATAG
390 TCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* * *
19213777 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCAATGGCTTGCGCATCCCGTCTC
455 AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCAACGGCTTGCACATCCCGTCTC
* * * *
19213842 TCTGGCCTACGTAGTGCCCG-G-CCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTC
520 TCTGGCCGACGTAGTGCCCGCGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTC
* *
19213905 ATACCTAGTCTAAGATCAGACC-GCACCGAGGGTTGTGGCAGCAGGATCGACAGCACATAGAGGG
585 ATACCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAGGG
* * * * * * * *
19213969 CAACCCAATCGTTCCCC-AATATGTGCATCCCGCCTCTCT-GGTCGGCTGAGCACCCGTACGTTC
649 -AACCCAACCGATCCCCGAAT-TGCGCATCCCACCCCTCTAGCT-AGCTGAGCACCCGCACGTTC
* *
19214032 GTTTCGTGGGTTGACTTAGGCAT
711 ATTTCGTGGGTTGACTTAGACAT
* ** * * *
19214055 ACGG-ATTGGGGTTCCGGTGATTAGGGGGCCGGGGGGTGTGCGTACATGATGTACGATGGGTGTT
1 ACGGCATTAGGGTTCCGGCAATTA-GGGGCCGGGGGGTGTGCGGACATGATATACGATGGGTGCT
*
19214119 GGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAA
19214184 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTT
* * *
19214249 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTGTTTTATGCATGCCAAA
* * * * *
19214314 CAAAATACAAGTATCACGTCTACCAAGTTTGGGGACAAAACTGTTTCCAAAAAAGTTTTAAAAAA
260 AAAAACACAAGTATCACGTCCACCAAGTTTGGGGACAAAACTCTTTCCAAAAAAGTTATAAAAAA
** * * *
19214379 TCCCAAACTGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
325 TCCCAAACTACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
**
19214444 TCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
390 TCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* * *
19214509 AAATATGAAGATGTACCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCACATCCCGTCTC
455 AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCAACGGCTTGCACATCCCGTCTC
* *
19214574 TCTGGCCGGCGTAGTGCCCGCCCGCCCTTCCGCCCGCTTATTTCATCGATTGGCTTAGGCATACA
520 TCTGGCCGACGTAGTGCCCG--CG--C--CCGCCCGCTCATTTCATCGATTGGCTTAGGCATACA
* * * *
19214639 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGATAGCACGTA
579 GAGTTCATACCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATA
* * * *
19214704 GAGGGGACCCAGCCGATCCCCGACTTGCGCATCCCACCCCTCTAGCTAGCTGAGCATCCGCACGT
644 GAGGGAACCCAACCGATCCCCGAATTGCGCATCCCACCCCTCTAGCTAGCTGAGCACCCGCACGT
19214769 TCATTTCGTGGGTTGACTTAGACAT
709 TCATTTCGTGGGTTGACTTAGACAT
19214794 ACG
1 ACG
19214797 AAGTTCATTC
Statistics
Matches: 656, Mismatches: 73, Indels: 19
0.88 0.10 0.03
Matches are distributed among these distances:
731 26 0.04
732 462 0.70
735 1 0.00
739 68 0.10
740 98 0.15
741 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (733 bp):
ACGGCATTAGGGTTCCGGCAATTAGGGGCCGGGGGGTGTGCGGACATGATATACGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTGTTTTATGCATGCCAAAA
AAAACACAAGTATCACGTCCACCAAGTTTGGGGACAAAACTCTTTCCAAAAAAGTTATAAAAAAT
CCCAAACTACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
AATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCAACGGCTTGCACATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCA
TACCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAGGGAA
CCCAACCGATCCCCGAATTGCGCATCCCACCCCTCTAGCTAGCTGAGCACCCGCACGTTCATTTC
GTGGGTTGACTTAGACAT
Found at i:19215828 original size:24 final size:24
Alignment explanation
Indices: 19215795--19215841 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
19215785 ATTAGAGATT
*
19215795 TTACAAGTTTGCTGCTAGTAGCCG
1 TTACAAGTTTGCTGCCAGTAGCCG
*
19215819 TTACAGGTTTGCTGCCAGTAGCC
1 TTACAAGTTTGCTGCCAGTAGCC
19215842 ATCAAATGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.23, G:0.26, T:0.32
Consensus pattern (24 bp):
TTACAAGTTTGCTGCCAGTAGCCG
Found at i:19216350 original size:26 final size:26
Alignment explanation
Indices: 19216320--19216372 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19216310 GATGACTTAG
19216320 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
19216346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19216372 G
1 G
19216373 ATCGGTCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19218307 original size:26 final size:26
Alignment explanation
Indices: 19218278--19218330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19218268 GTTGACTTAG
* *
19218278 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
19218304 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
19218330 G
1 G
19218331 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:19220096 original size:26 final size:26
Alignment explanation
Indices: 19220060--19220112 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19220050 GTTGAGTTAG
*
19220060 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
19220086 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19220112 G
1 G
19220113 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19220452 original size:899 final size:896
Alignment explanation
Indices: 19217405--19235356 Score: 13754
Period size: 903 Copynumber: 19.9 Consensus size: 896
19217395 ACTTAGGCAC
* * * * * * *
19217405 ACAGAGTTCATTCCCAGTCTAAGATCGGTCCGGACAGAGGGTTGCGACAGCACATTCTAGGCTCG
1 ACAGAGTTCA-T-CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
** * * * * * *
19217470 AACTTGTGCCGGTGCCGTATTTTTCTTCGCCGGGGCACCATCG-CTGGAGCATCGCCAGAGAACC
64 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACC
* * * * * * * *
19217534 TAACCAGCGGCATAGGGGTTCAGGCGGTCGGGGGGGCC-GGGGGGTGTGCGCACATGAAGTGCAA
128 TGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
19217598 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
19217663 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAATGTCTGAAATGGA
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* * *
19217728 AACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTATGC
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
19217793 ATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGTCAAAACTCCTTTCC-AAAAAAT
387 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCC-TTCCGAAAAAAT
* * * * *
19217857 TTAAAAAAATCCTGGACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
450 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
19217922 CGTGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * *
19217987 GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCA
580 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
19218052 TCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCCTGCCCATCCGCTCGTTTCGTTGATTGGGTT
645 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC--CGC--CCGCTCGTTTCGTCGGTTGGCTT
*
19218117 AGGCATACAGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGA-GGCAGCAGGATC
706 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTT-ACGGCAGCAGGATC
*** * * * * *
19218180 AGCAGCACATGGAGGGGGACCCGGCCGATCCCTGGA-TTTCGCATCCCACCCCTCTGGCCGACTG
769 AGCAGCACGCAGAGAGGGACCCGACCGATCCCT-GACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
19218244 AGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCAT
833 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * **
19218308 ACGGAGTTAATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTGGCACATGCTGGGCTCG
1 ACAGAGTTCA-T-CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
19218373 GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACTATTGTCGGAGCATCGTCGGAGAACCT
64 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* *
19218438 AACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATG
129 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* ** *
19218503 GGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCAGGAGAACTCATACCCC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
19218568 CTTAAAGAGCATTTGAGATTTTACATGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
* *
19218633 CACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCAT
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * **
19218698 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAACTTT
389 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAA-TTT
* * * * * *
19218763 AAAAAAATCCCAAATCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCA
452 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
19218828 TGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
19218893 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCACATC
582 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
19218957 CCGTCTCTCTAGCCGACGTAGTTCTCACCCGCCCGTCCGCTCGTTTCGTCGGTTTGCTTAGGCAT
647 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* *** * ** * * * *
19219022 ACGAAGTTCATTCCCAGTCTAAGATCAGACTACAGCGAGGGTTGTGGTAGCAGGATCGGTAGCTC
712 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCAC
* ** * * * *
19219087 GCA-AGAGGAACCCTG-CTAATCCTTGGCTTACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCG
777 GCAGAGAGGGACCC-GACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * * * * *
19219150 CTCGCTTGTTTCGGGGGTTTACTTGGGCATACGGAGTTGATTCCTAGTCTAAGCAT
841 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * ** *
19219206 ATAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTTTGGCAGCACATGCTAGGCTCG
1 ACAGAGTTCA-T-CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
19219271 GGCAAGTGTTGGTGTCGCA---TT-TT--T--------CATCGTCGGAGCATCGTCGGAGAACCT
64 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * * * * * *
19219322 GACCAGCGGTATTGGGGTTTCGAAGATCGGAGGGCC-GGGGGGTGAGCACACATGATGTGCGATG
129 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * *
19219386 GGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCATACCTCGAGAACTCACACCCC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
19219451 CTTAAAAAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
19219516 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTT-TGCA
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCA
* *
19219580 TGCCAAAAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAATGCCTTCCGAAGAAATTT
388 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAT-CCTTCCGAAAAAATTT
* * ** *
19219645 TAAAAAATCCCGAACTGCAGAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
452 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19219710 TGAAACTTCACATGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGA
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
19219775 AATGCAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGGATC
582 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
19219840 CCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGCCTTAGGCAT
647 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * * * * *
19219905 ATGGAGTTCATTCCCAGTCGAGGATCAAACTGGGCTGAGCGTTACGGCAACAGGATCGGCAGCAT
712 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCAC
* * * * * * *
19219970 GCAGAGATGGACCCGTCCGATTCTTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGACCGC
777 GCAGAGAGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
19220035 ACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAATCTAAGCAT
842 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * **
19220090 ACAGAGTTCATTTCCAGTCTAAGATTAGACCAGATCGAGGGTTGTGGCATCACATGCTAGGCTTT
1 ACAGAGTTCA--TCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * * *
19220155 GGCATTTCCTGGTGCCGCATTTTTCTTTGTCGGGGC-CCATCGCCGGAGTATCGCCGGAGAACCT
64 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * * * *
19220219 GACCGACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGTGGTGTGCGCACATGATGTACGAT
129 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
19220284 GGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCAT-GAGAACTCATACC
193 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACC
*
19220348 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* *
19220413 GACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGC
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * ** * * *
19220478 ATGCCAAAAAAAATACAAGGGTCATGTCTATTAAGTTTGCGGTCAAAACTCCTTTCGAAAAAATT
387 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATT
** *
19220543 TTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
451 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19220608 GTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTG
516 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
19220673 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
581 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
19220738 CCCGTCTCCCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCA
646 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * ** **
19220803 TACGGAGTTCATTCTCAGTCTCAGATCAGACTGGACCGAGGGTTGCAACAGCAGGATTGGCAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCA
* * * * * * * * *
19220868 CACGGA-AGGGGACCTGGCTGATCCCCGACTTGCGTATCTCGCCCCTCTGGCAGGCTGAGCGCCC
776 CGCAGAGA-GGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
19220932 GCACGCTCTTTTCGTGGGTTGGCTTAGGCATACGGAG----TT--CA-T-T---C--
840 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* ** * **
19220976 -C-----T--T---GTCTAAGATCGGACCAGACCGAGGGTTGCCACAGCACATACTGTTCTCGGG
1 ACAGAGTTCATCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* *
19221030 CATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * *
19221095 CCGGCGGCATTGGGGTTCCGATG-TCGGGGGGGCCGGGGGGGTGTGCGCACATGATTTGTGATGG
131 CCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
*
19221159 GTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
19221224 TTAAAGAGCATTTGAGATTTGATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTACAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
* ** * *
19221289 ACTTTTTTCAAATGGTCACAAAATATTGTATGCTTCGAGTTTGTAGCTAAATTTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
19221354 CCAACAGAAATACAAGGATAAAGTCTACCAAGTTTGGGGCCAAAGCTGCTTCC-AAAACAATTTT
390 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-ATCCTTCCGAAAA-AATTTT
*
19221418 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
453 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
19221483 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-TAAAAAATGGCATTGG
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGG
* *
19221547 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGTGCATC
582 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
19221612 CCGTCTCTCT-GTC-ATCGTAGT----GCCCGCCCGCCCGCTCGTTTCATCGATTGTCTTAGGCA
647 CCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * * * * *
19221671 TACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTATGACAGTAGGATCAACAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCA
* * * * * *
19221736 CGCAGAGGGGGACCCGACCGATCCCTAACCTGTGCTTCCCGCCCCTCTGGCCGGTTGAGCGCCCG
776 CGCAGAGAGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
19221801 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
841 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * ** *
19221857 ACAGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGCATTGCGGTAGCACATGCTGGGCTCG
1 ACAGAGTTCA-TCC-AGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
19221922 AGCATGTGATGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
64 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * * *
19221987 GACCGGTGGCATTGGGGTTCCGATGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATG
129 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * *
19222052 GTTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * *
19222117 CTTAAAGAGCATTTGCGATTTTACAGGTCTACTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
* * * *
19222182 CACTTTTTTCGAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCAA
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
19222247 GCCAAAAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCATAACTCCTTACGAAAAAATTTT
389 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAATCCTTCCGAAAAAATTTT
* * *
19222312 AAAAAATCCCGAAGCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCAT
453 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
19222377 GAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGAC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
19222442 ATTCAGAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
583 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
19222507 CGTCTCTCT-GCCGTCGTAGT----GCCCGCCCGCCCGCTCGTTTCATCAGTTGTCTTAGGCATA
648 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * *
19222567 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGGTAGCAGGATCAACAGCACG
713 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCACG
* * ** * * * * *
19222632 TAGAG-GGGACCCGACCGATCCCCGACCCGTGCTTCCGGCCCCTCTGGTCGGCTGAGCGCCTGCA
778 CAGAGAGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
19222696 TGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT
843 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* *
19222749 -C--AG---A-CC-G-----GACT-G---AG--C-A---TTGCGGTAGCACATGCTGGGCTCGGG
1 ACAGAGTTCATCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * *
19222791 CATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * *
19222856 CCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATCATGTGCAATGGT
131 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * **
19222921 TGCTGGTAGTTGGCCCTTCTATTGGCCCCCTATCGCTCATCAAACCTTAAGAACTCACACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
19222986 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* *
19223051 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTTTTGCATG
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATG
* *
19223116 CCAAAAAAAATACAAGGATCACGTCTAGCAAGTTTGGGG-CAGAAACCCCTTCC-AAAAAATTTT
390 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAA-TCCTTCCGAAAAAATTTT
* * *
19223179 AAAAAATCCCAAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
453 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
19223244 GAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTGCAAGCCAAAAAAATGGCATTGGG
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GG
*
19223309 ACAT--AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
582 -CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
19223372 CCTGTCTCTCTGGCCGGCGTAGTGCTGGCCCGCCCGCCCGCCCGTCTGCTCGTTTCGTCTGTTGG
646 CCCGTCTCTCTGGCCGACGTA--G-T-GCCCGCCCGCCCG-CC--C-GCTCGTTTCGTCGGTTGG
* * * * ** * * **
19223437 CATAGGCGTACGGAATTCATTGCCAGTCTAAGATGGGACCAGACCGACGGTTGTGGCAGCAGGAT
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGAT
* * * * * ** ****
19223502 CGGTAGCACGCAGAGGGGGACCCGGCCGAGTTTGGGGCCAAAACT-CCTTGCAAAAAAATTTTAA
768 CAGCAGCACGCAGAGAGGGACCCGACCGA---T----CC----CTGACTTGC----GCA-TCCCG
**** * ** ** ** ** *** * * * * * * *
19223566 AAAATCCGGAAGCGCAAAAAGTTTCG-AAAATTGTGAAAAATAGAAAATGAGTCGTCTT-GCCAT
817 CCCCTCTGGCCG-GCTGAGCG-CCCGCACGCTCGT-----TTCG----TGGGTTGACTTAGGCAT
* * * ** *
19223629 --GAAACTTCACGT-GAAGGCTTAAGGGACCATT
871 ACG-GAGTTCA-TTCCCAGTC-TAA--G--CA-T
** * * ** * *
19223660 TTATGAATTTACAAGCCA-TAAAAATGGCATT-GACATGCAGACACATGAAGATGTGC--CTAGA
1 ACA-G-AGTT-C-ATCCAGT-CTAA--G-ATTGGAC---CAGAC-C--GAGGGT-TGCGGC-AG-
* * **** ** *** * ** * *
19223721 CCCACCTACCACCCTATCGATCCATG-GCT--TG-CGCATCCCGTC-TC-TCTGGGCGGCGTAGT
49 --CACATGCTGGGC--TCG-GGCATGTGCTGGTGCCGCAT-TTTTCTTCGTCGGGGCACCATCGT
** ** * *** ** * * *
19223780 GCCCGTCCGC-TCGTTTTGTG-GGTTGA-CGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
108 ---CG-GAGCATCG-TCGGAGAACCTGACCGGCGGCAT-TGG-G---GTT-CC-G---ACGATC-
** * * * * * * * * *
19223842 GATTGGACC--GAGGGT-TGCGGTAGCAGGA--T-CGGTAGGTGCTGG-AGC--AG-CATT-TTT
157 G-GGGGGCCGGGGGGGTGTGC-GCA-CATGATGTGCGATGGGTGCTGGTA-CTTGGCCCTTATAT
** * **** * * * *** *
19223896 TTTCACCGGGGCAC-CAT----CGTCG-GAGCATCACCGGAGAACC-TAACAGGTAGCA-TTGGG
218 TGGCCCCCTATCCCTCATCAAACCTCGAGAAC-TCA-C--ACCCCCTTAA-A-G-AGCATTTGAG
* ** *** * *** * * * * * * **
19223953 GTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATCATGTG-C--GATTGGTGCTGGTACTT
276 ATT-TTAC-A--GGTTTG-C-TGCCAGT-AGC-CA-TTAAAGTGTCTAAAATGG-G--GACACTT
** * * *** ** * **
19224015 GGCCCTT-ATATTGG-CCCCCTATCCCTCATCACACCTCGAGAACTCACACCCCCTTAAAAAGCA
329 ---TTTTCA-AATGGTCACAAAAT--CTTGT-ACACTTCGAG---T---------TT--TTAGC-
* ** ** * * * **
19224078 TTTGAGATTCTACAAGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGA-CACTTTTTTC
372 --TGA-ATT-T----TTTTG-TG-CA-T-GCCAAAAAAAATAC---AA---GGATCACGTCTACC
* * * **
19224142 AA--AT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAACA
419 AAGTTTGGGGC-CAAAATCCT-T---C--CGA------A----AA--AATTT-----T---AA-A
** * * * * * * *
19224204 AAATACAAGGATCACGTATACCATGTTTGGGGCCAAAAATCCTTCCGAAAAAATTGTAAAA--AA
456 AAAT-C-CCGAAC-CGCA-A-AAAGTTT-----CAAAAAT-CGT--G-AAAAATAG-AAAACGAG
* ** * * *** * * * *
19224267 TCCCGACCAG-CA-AAAAGTTTCAAAAC-TCAAGAAAAATAGAAAACGAGTCGTC-TTGCCATGA
506 T--CGTCTTGCCATGAAA-CTTC---ACGT---GAAGGCT---TAA-GGGAC--CATTG-TATG-
* * * * * ** * * * * *
19224328 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
554 AA-TTTAC---AAGCCATAA---A--AATG---GCATTGGCATG-CAGAAATAT-G-A--AG-AT
** ** * * * * * *
19224393 GTAGAAATATAA-AGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCT
601 GT-G-CCTA-AACCCA----CCT--A-CCACC--CTATC-GATCCA-CG---GCTTGCGCATCCC
* * *** ** *
19224457 GCCTCTCTGGCCG--GCA-T-----AAAGCCCGCTTGCTCGTTTCGTCGGTTGTCTTAGGCATAC
649 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * ** * ** ** *
19224514 GGAGTTCATTCCCAG-CTAAGATTGGGCTAGACTGAGGGTTGTGGCAGTTGGATC-GACAACACG
714 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAG-CAGCACG
* * * * * ** *
19224577 CA-ATGGGGGACCCGACCGATACCCAG-CTTACGCATCCCACCCCTC-GACCGATTGAGCGTCCG
778 CAGA-GAGGGACCCGACCGAT-CCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
** ** * *
19224639 CACGCTAATTTTATGGGTTGACTTAGGCATACGGAGTTCAATCCCATTCTAAGCAT
841 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * *
19224695 ACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGTAGCAACATCGCCAACAC
1 ACAGAGTTCA-T-CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGC-ACAT-G----C-T
* *** * * * ** * * * *
19224760 GCAGAGGGGGACCCGACCGATCCCCGGCTTG-CGCATCCCGTCCTTC-T--GGTCGACTGAGCGC
57 G-GGCTCGGG---C-A-TG-T-GCTGG--TGCCGCAT--TTTTCTTCGTCGGGGC-AC-CATCG-
* * ** * ** ** ** * ***
19224821 CCGTATGC-TCGTTTCGTG-G--GTTGACTTAGGCATACAAAGTTAGTTCCCA-G-TC--TAAGC
107 TCGGA-GCATCG--TCG-GAGAACCTGAC--CGGC-GGCATTG-GGGTTCCGACGATCGGGGGGC
*** * * * * * * * * *
19224878 TTATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA-GGGTTGCGGCAGATCATGTTGGCT
164 -CGGGGGGGT-GTGCGCA--C-ATGAT--G--T-G--CGATGGG-TGCTG--G-T-A-CTTGGCC
* * ** * * * * ** ***
19224942 CTGGCATGTCCTGGTGCCGCATTTTTCTTCGTCAGGGAACCATCGTCAGGGCATCACCGGAGAAC
211 CT--TATAT--T-G-GCC-CCCTATCCCTCATCA---AACC-TCG--AGAAC-TCA-C--ACCCC
* ** * * * * * *** * ** *
19225007 CTGACCGGCGGCA-GTGGGGTTTCAACGATCGGGGGGGCCGGGCGTGTGCGCACATGATGTATGA
259 CTTA-AAG-AGCATTTGAGATTT-TAC-A---GGTTTG-C-TGCCAGT-AGC-C---AT-TA--A
* * ** * * * * *** * * * *
19225071 TGGGTGCTGGTACT-TGG-CCCTTATATTGGCCCCCT-ATCCCTTATCAAACCTTG-AGAAC-TC
307 AGTGT-CT-AAAATGGGGACACTT-T-TT--TCAAATGGTCAC--A--AAATCTTGTA-CACTTC
* ** ** ** * *
19225131 ACACCCCTTAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAAT
361 -GA--GTTTTTAGC---TGA-ATTTT-----TTTG-TG-CA-T-GCCAAAAAAAAT-AC---AA-
* * * ** * *
19225195 GGGGA-AACTTTTTTCAA--AT-GGTCACAAAAT-CTTGAACACTTCGAATTTTTAGCTGAGTTT
405 --GGATCACGTCTACCAAGTTTGGGGC-CAAAATCCTT-----C--CGAA-----A----A----
** ** * ** * *
19225255 TTTTGTGCATGCCAATAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCCTCCA
447 AATT-T---T----A-AAAAAT-C-CCGAAC-CG--CAAAAAGTTT-----CAAAAAT-CGT---
*
19225320 AAAAATTTTAAAAAATCCTGAATTGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGGGTCG
489 GAAA----------------AA-T------A-----GAAAA-C--G-----------A---GTCG
*
19225385 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAACAAT
509 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
19225450 GGCATTGGCACACAGAAATATGAAGATGGGCCTAAACCAACCTACCACCCTATCGATCCACGGTT
574 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
19225515 TTCGCATCCAGTCTTTCTGG-CTAGCGTAGTGCCCGCCCGCTTGCCCGCCCGTTCATTTTGTCGA
639 TGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCG-CC-C--GCCCGCCCGCTCGTTTCGTCGG
* * * ** * * * * * *
19225579 TTGGGTTTGGCATACGGAGTTCATTCCCAATCTAAGATTGGGCCGAATCGAGGGTTGCGGTAGTA
699 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCA
* * ** * ** * * * *
19225644 -GATCGGTAGCGTGCAGA-AGGGGACGCGGTCGAT-CTTCGGCTTGCACATCCCGCCCCTCTGAC
764 GGATCAGCAGCACGCAGAGA-GGGACCCGACCGATCCCT-GACTTGCGCATCCCGCCCCTCTGGC
* ** *
19225706 CGGCTGAACGCCCGCACAATCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
827 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
19225771 AG-AT
892 AGCAT
*
19225775 -C--AG---A--C---C--------G----GACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGG
1 ACAGAGTTCATCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * * * ** *
19225817 CTTGTGTTGGTGCCACATTTTTCTTCGTCGGTGCACCATCGCCGGTGCACCACCGAAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * * ** *
19225882 CCGACGACATTGGGGTTCCGTCAATCCGGGGGGCCGGTTGGGTGTGCACACATGATGTGCGATGG
131 CCGGCGGCATTGGGGTTCCGACGAT-CGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
19225947 GTGCTGGTACTTGGCCCATATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACTCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
19226012 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
*
19226077 ACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
19226142 CCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTA
390 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAAAATTTTA
* ** * *
19226207 AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAAGAGAAAACGAGTCGTCTTGCCATG
454 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
19226272 AAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATAGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * * *
19226337 TGCA-AAACTATAAAGATGTGCCTAAATCCATCGACCACCCTATCGCATCCATGGCTTCCACATC
584 TGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCACGGCTTGCGCATC
* * * * *
19226401 CCATCTCTCTGGCC-AGCGTAGTGCCCCCCACCCATCCACCCGTTCGTTTCGTCGGTTGGCTTAG
647 CCGTCTCTCTGGCCGA-CGTAGTGCCCGCC-CGC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * * * *
19226465 GCATACGGAGTTCATTCCTAGTCTAAGATCGGTCTAGATCGAGGGTTGCGGTAGCAGGATCAGTA
708 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCA
* * * ** * * * * *
19226530 GCATGTAGAGGGGGACCCGGTCGATCCCTGACTTGCGCAACCCACCCCTTTGTCCGGCTAAGCGC
773 GCACGCAGAGAGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* **
19226595 CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCAT
838 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * **
19226654 AC-----T-A---AGATC--AGACTGGATC-GA---A-GGTTACGGTAGCACATGCTGGGCTCAA
1 ACAGAGTTCATCCAG-TCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * * * ** *
19226703 GCATGTGCTGGTGTCGTATTTTTCTTC-ACCGGGTACCATCACCGGAGCATCATCGGAGAACCTG
65 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
* * * * *
19226767 ACCGGTGACTTTGGGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATG
130 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
19226832 GGTGCTGGTA-------C-----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
19226885 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
* * *
19226950 CACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTCTTTGTGCAT
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
19227015 GCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
389 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTTT
* * ** * * *
19227080 AAAAGATCCCGAACCACAAAAAGTTTTGAAAATGGTGAAAAATAGAAAATGAGTCATCTTGCCAT
453 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
19227145 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*** * * *
19227210 ACATAGAAATATGAAGATGTGCCTAGACTCACCTACCACCCTATCGATCCACGGCTTGCGC-TTC
583 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
19227274 TGTCTCTCTGGCCGACGTAGTGCCCTCCTGCCAGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
648 CGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
19227339 CATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCAGGATCGGCAG
709 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCAG
* * * * * * *
19227404 CACCCAGAGGGGGACCTGCCCGATCCCTGACTTGCGCATCCCGCCCTTCTAGCCGGCTAAGCGCC
774 CACGCAGAGAGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
19227469 CGTACACTCGTTTCGTGGGTTGACTTAGGGATACGAAGTTCATTCCCAGTCTAAG-AT
839 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* **
19227526 -C--AG---A--C---C------T------GACCGAGGTTTGCGGCAGCACATGCTGGGCTCAAG
1 ACAGAGTTCATCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
** * * ** *
19227568 CATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGAAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * * * * *
19227633 TCGGCGACATTGGGGTTTCGACGATCAGGGGGCCCGGGGGGGTGTGCGGACATGATGTACGATTG
131 CCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * * * *
19227698 GTACTGGTACTTGGTCGTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * **
19227763 TTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAATGTGTCCGAAATGAGGG-
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG-GGGA
* * * * *
19227827 CACTTTTTTTAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTATTTTGGGAAT
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
19227892 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTT
389 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTTT
* * * ** * *
19227957 AAAAGATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCAT
453 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
19228022 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
19228087 AGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCC
583 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
19228152 CGTCCCTCTGGCTGGC-TAGT----GCCCGCCCGCCCACTCGTTTCGTCGGTAGGCTTAGGCATA
648 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * ** * * * *
19228212 CGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGTGGAAGGAGGATCGGCAGCACA
713 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCACG
* * * * * * ** * *
19228277 CAGAG-GGATAGCC-ATCCGATCCCCCGATTTACGCATCTCGCCCCTCTGATCGGCTTAACGCCC
778 CAGAGAGG-GACCCGA-CCGAT-CCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
19228340 GCACGCTCGTTTCGTGGGTTTACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAT
840 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
** ** *
19228397 ATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG-GGGCTTGCGGC-GCACATGTTGGGCTC
1 ACAGAGTTCA-T-CCAGTCTAAGATTGGACCAGACCGAGGG-TTGCGGCAGCACATGCTGGGCTC
* * * *
19228460 GAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCA---TC---GC--C-T--GAGAACT
63 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * * * * * *
19228514 TGATCGACGGTATTGGGGTTCCGGCGATCGGGGGGCCCGGGGGGTGTACGCACATAATGTGCGAT
128 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
19228579 GAGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
193 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * * *
19228644 CCTTAAAGAGAAGTTGAGATTTTACAGGTTTGCTGGCAATAGCCATTAAAGAGTCTGAAATGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
* *
19228709 ACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * ** ** * **
19228774 TGCTAACAAAAATACAAGGATCAAATCTATGAAGTTTGAGGCCAAAACTCCTTTTGAAAAAATTT
388 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTT
* * * *
19228839 TAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
452 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * ** *** ** *
19228904 TGAAACTTCACGTGAAGGCTTAAGGGGCCAGTGTACCACCCTATC--G--ATCCACA--GC-TTG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-CAAGCCATAAAAATGGCATTG
* **** * ** * **** * * * * * *
19228962 TGCATCCCATCTCTCTG--GCCG-GCGT-TGTGCTCGT-CC-TCC---CG--CC-CGTC-CGCTC
581 -GCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** ** ** * * * ** * *** * * * * *
19229014 ATTTCGTCGGT-TGGCTTAGGCA-T--ACG-GAGTTCATTCC-C-AG--TC-TAAGATTGG-ATC
644 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCCGCCCGCTCGTTTCGT-CGGTTGGCTTA
* * * ** * * * * * *
19229068 GG-A-CCGAGGGTT--GTGGCAG-C-AGGATCAG-CAGCACGCGGAGGGGTAC-CCGACCA--AT
707 GGCATACG-GAGTTCATTCCCAGTCTAAGATCAGACCGGAC-C-GAGGGTTACGGC-AGCAGGAT
**** * * ** * * * * * *
19229123 C--C--C-CGGTTTG-TGCATCCC-ACCCCTCTGGCC-GGCTTAGCGC-CCGCACGCTCGTTTCG
768 CAGCAGCACGCAGAGAGGGA-CCCGACCGATC---CCTGACTT-GCGCATC-C-CGCCCCTCTGG
** * **** ** * ***** * * *
19229179 TGGGTTGA-CTTAGGCATACG-GAG-TTCATTCCCAGTC-TAAGCATAAGGAGTTCATTCCCAGT
826 CCGGCTGAGCGCCCGC--ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
19229240 CTAAG-AT
889 CTAAGCAT
* * * *
19229247 -C-G-G---A-CC-G-----GA-T---------CGAGTGTTACGGCAGCACATGTTGGGCTCGAG
1 ACAGAGTTCATCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* *
19229289 CATGTGTTGGTGCTGCA---TT-TT--T--------C-T--TC---G---C--CGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * * * * *
19229329 TCGACGGTATTGGGGTTCCGACGATCGGGGGGCC-GAGGGGTGTACGCACATAATGTGC-ATTGA
131 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGG
19229392 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
19229457 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTAG-CAATAGCCATTAAAGTGTTTGAAATGGGGA
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
* *
19229521 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTTTTGCA
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCA
* * ** * * *
19229586 TGCTAAGAAAAATACAAGGATCAAATATACCAAGTTTGAGGCCAAAACTCCTTCTGAAAAAATTT
388 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTT
** * * *
19229651 TAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
452 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
19229716 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
19229781 CAGGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCATC
582 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
19229846 CCATCTCTCTGGCCGGCGTTGTGCCCGTCCTCCCGTCCGCCCGCTTGTTTGGTCGGTTGGCTTAG
647 CCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * ** * * *
19229911 GCATACGGAGTTCATTCCCAATCTAAGATTGGACTGGGCCGAGGGTTGTGGCAGTAGGATCGGTA
708 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCA
* * * * * ** *
19229976 GCACACAGAG-GGGTACCCGATCGATCCCCGATTTACGCATCCCGCCCCTCTGGCCAACTTAGCG
773 GCACGCAGAGAGGG-ACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
19230040 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTATAAGCAT
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
** * *
19230100 ACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGATGCGGCAGCACATGCTGGGCTCA
1 ACAGAGTTCA-T-CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* *
19230165 GGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
64 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * ** *
19230230 GACCGGCGGCATTGGGGTTTCGACGATTGGCGGGG-TTGGGGGGTGTGCGCACATGATGTACGAT
129 GACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
19230294 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCAAGAACTCACAACC
193 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * ** *
19230359 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCGGTTAAAGTGTCTGAAATGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
* *
19230424 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * ** *
19230489 TGCCAAGAAAAATACAAGGATCACATCTATGAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTT
388 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAAAATTT
* * ** ** *
19230554 TAAAAAATCCCGAACCGTAAAAGGTTTTGAAAATTATGAAAAATAGAAAATGAGTCGTCTTGCCA
452 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
19230619 TGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
19230684 CATGCACAAATATGGAGATGTACCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATC
582 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * ** * *
19230749 TCATTTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTTGTTTCGTTGGTTGGCTTAG
647 CCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** *
19230814 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGCATC-GAC
708 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAG-C
* * * * * * * * * *
19230878 AGCACACAGAG-GGGAACTCGGCTGATCCCCGGCTTGCCCATCTCACCCCTCTGGCCGACTGAGC
772 AGCACGCAGAGAGGG-ACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
19230942 GCCTGCATGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAT
836 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* *** * **
19231003 ACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCAACAGCACATGCTGGGCTCG
1 ACAGAGTTCA-T-CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* *
19231068 GGCATGTGCTGGTGCCGCATTTTTCATCGTCGGGGCACCATC-ACTGGAGCATCGTCGGAGAACC
64 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACC
* * *
19231132 TAACCGACGACATTGGGGTTCCGACGATCGAGGGGGCCGCGGGGGGTGTGCGCACATGATGTGCG
128 TGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCG-GGGGGGTGTGCGCACATGATGTGCG
* *
19231197 ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
191 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
19231262 CCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATGAAAATGTCTGAAATGG
256 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* *
19231327 GGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGT
321 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
* **
19231392 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAA
385 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAA
* * **
19231457 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
449 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
19231522 CCATGAAGCTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
19231587 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
579 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
19231652 ATCCCGTCTCTTTGGCTGGCGTAGT----GCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGG
644 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * ** * * * ** *
19231713 CATACGGAGTTAATTCCTTGTCTAAGATCAGACCGAACTAAGGGTTGCGGTAACAGGATTGGCGG
709 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCAG
* * * * * * *
19231778 CATGCAGAGAGGGACCCCG-TCAATCCCCGGCTTGCGCATCTCGCCTCTCTGGCCGGCTGAGCGC
774 CACGCAGAGAGGGA-CCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
** *
19231842 CCGCACGCTAATTTCGTGGGGTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
838 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
19231901 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCA
1 ACAGAGTTCA-T-CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * *
19231966 AGCATGTGCTGGTGCCGCATTTTCCTTCGTCGGGGCACCATCGCCAGAGCATCATCGGAGAACCT
64 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* *
19232031 GACTGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGCGGGGGGTGTGCGCACATGATGTGCGA
129 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGA
*
19232096 TGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
19232161 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTAATTAAAGTGTCTGAAATGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-CATTAAAGTGTCTAAAATGG
*
19232226 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAG-TTTTAGCTGAATTTTTTTGTG
321 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * *
19232290 CATG-CAAACAAAAGTACAGGGATCATGTCTACCAAGTTTGTGGCCAAAACTACTTCCAAAAAAA
386 CATGCCAAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAA
* * * *
19232354 TTTTAAAAAATCCTGAACCGCAAAAAGTTTGAAAAATCGTGAAAAATATAAAACGAGTCGTCTTA
449 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
19232419 CCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * ** *
19232484 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATAGCTTGCAC
579 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
19232549 ATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCTCTCGCTCATTTCGTCAGTTGGCT
644 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC--CGC-C-CGCTCGTTTCGTCGGTTGGCT
* * * * * * * * *
19232614 TAGGCTTATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCTGCCGGAGGATCC
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCA
* * * * * ** * * * * *
19232679 GCAGAACGTAGAGGGGGACTCGATCGATCCCCAACTTGTGCATCTCGCTCCAT-TGGTCGGTTGA
770 GCAGCACGCAGAGAGGGACCCGACCGATCCCTGACTTGCGCATCCCGC-CCCTCTGGCCGGCTGA
* * * ** *
19232743 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATCCGGAGTTCTTTCCTGGTCTCAGCAT
834 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * * *
19232806 ACGGAGTTCATTCCTAGTGTCAGATCGGACCGGACCAAGGGTTG-GGACAGCACATGTTGGGCTC
1 ACAGAGTTCA-TCC-AGTCTAAGATTGGACCAGACCGAGGGTTGCGG-CAGCACATGCTGGGCTC
* *
19232870 GGGCATGTGCTGGTGCCGCATTTATCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
63 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * ** *
19232935 TGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG-ATGGGGGGTGTGCGCACATGATGTACGAT
128 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
*
19232999 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCC
193 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
19233064 CCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
* *
19233129 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCC
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
19233194 TGCCAACAAAAATACAAGGATCACATCTACCAATTTTGGGGCCAAAAATCTTTCCCAAAAAATTT
388 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAAAATTT
* * ** *
19233259 TAAAAAATCCCGAACCACAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
452 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
***
19233324 TGAAACTTCACGTGAACTTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
19233389 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATC
582 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
19233454 CCGTCTCTCTGGCAGGCGTAGTGCCCACCTGCCCGCCCTCTCGCTTGTTTCGTCGCTTGGCTTAG
647 CCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * * * *
19233519 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCAAGGGTTACGGCACCAAGATCGGCA
708 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCA
* * * ** * * * * *
19233584 GTACGTAGAGGGGGACCCGGTCGAT-CCTCGGCTTGCACATCCCGCCACTCTGGTCGGTTGAGCG
773 GCACGCAGAGAGGGACCCGACCGATCCCT-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
19233648 CCCGCACGCTCGTTCCATGGGTTGATTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* ** * * *
19233708 A-TGAAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGCAGCACATTCTGGGCTT
1 ACAG-AGTTCA-T-CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * * *
19233772 GGGCATGTGTTGGTGCCACATTTTTTTTCATCGGGGCACCATCGTTGGAGCATAGCCGGAGAACC
63 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * * * * *
19233837 TGACCGACGGCATTGGGGTTCTGACGATCGGGGAGCCAGCGGGGGGTGTTCACACATGATGTGAG
128 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-G-GGGGGGTGTGCGCACATGATGTGCG
*
19233902 GTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
191 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
19233967 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTCAAATGG
256 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * ** ** * *
19234032 GGATAGTTTTTTCAAATGGTCGTAAAATCTTGTATGCTTCAAGTTTTTAGCTGAATTTTTTTATG
321 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
19234097 CATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGACCAAAAATCCTTCTGAAAAAAT
386 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAAAAT
* * ** * * **
19234162 TTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGACAACGAGTTATCTTGC
450 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
19234227 CATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* **
19234292 GGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTTA
580 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
19234357 TCCTGTCTCTCTGGCCGACGTAGT--------GCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGC
645 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * ** * *
19234414 ATACGGAGTTCATTCCCAGTCTAAGAAT-GGATCAGATTGAGGGTTGCGGTAGCAGGATC-GACA
710 ATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAG-CA
* * * * * * * * * * * *
19234477 CCACACAGATG-GGGAACCGGCCGATCCCCGGCATACGCATCCCTCCCCTCTAGCCGGCTAAGTG
773 GCACGCAGA-GAGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* ** * *
19234541 CCCGTACGCTCAATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGCAT
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * *
19234601 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGTTTGCGGCAGCACATGCTGGGATCG
1 ACAGAGTTCA-T-CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* ** *
19234666 GGCATGTGCCGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCT
64 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * *
19234731 GACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCC--GGGGGTGTGCACACATGATGTGCGGTG
129 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
19234794 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCCC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * * *
19234859 CTTAAAGAGTATTCGAGATTTTACAGGTTTGCTGGCAGTAGCAATTAAAGTCTCTGAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
* * *
19234924 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGATTTTTTTTATGCAT
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
19234989 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAACCTTCCGAAAAATTTTT
389 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAAAATTTT
* * * *
19235054 AAAAAATCCCGACCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
453 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
19235119 TAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* **
19235184 ATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTTATCC
583 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
19235249 TGTCTCTCTGGCCGACGTAGT--------GCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATA
648 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
19235306 CGGAGTTCATTCCCAGTCTAAGACCGGATCAGATCGAGGGTTACGGCAGCA
713 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCA
19235357 CATGCTGCGC
Statistics
Matches: 13854, Mismatches: 2328, Indels: 1748
0.77 0.13 0.10
Matches are distributed among these distances:
810 1 0.00
811 200 0.01
812 216 0.02
813 1 0.00
815 4 0.00
816 4 0.00
817 5 0.00
818 5 0.00
819 3 0.00
820 4 0.00
821 2 0.00
822 4 0.00
823 2 0.00
825 10 0.00
826 37 0.00
827 2 0.00
828 2 0.00
829 8 0.00
830 5 0.00
831 1 0.00
833 2 0.00
835 2 0.00
837 4 0.00
838 2 0.00
839 1 0.00
840 1 0.00
841 8 0.00
842 4 0.00
843 5 0.00
844 3 0.00
845 3 0.00
846 9 0.00
847 8 0.00
848 7 0.00
849 4 0.00
850 16 0.00
851 52 0.00
852 45 0.00
853 20 0.00
854 10 0.00
855 1 0.00
856 8 0.00
857 6 0.00
858 8 0.00
859 5 0.00
860 4 0.00
861 5 0.00
862 6 0.00
863 8 0.00
864 49 0.00
865 101 0.01
866 12 0.00
867 518 0.04
868 232 0.02
869 106 0.01
870 86 0.01
871 5 0.00
872 39 0.00
873 729 0.05
874 422 0.03
875 11 0.00
876 20 0.00
877 591 0.04
878 202 0.01
879 13 0.00
880 87 0.01
881 15 0.00
882 165 0.01
883 727 0.05
884 257 0.02
885 4 0.00
886 92 0.01
887 48 0.00
888 8 0.00
889 557 0.04
890 2 0.00
891 7 0.00
892 8 0.00
893 419 0.03
894 694 0.05
895 66 0.00
896 21 0.00
897 318 0.02
898 644 0.05
899 765 0.06
900 3 0.00
901 75 0.01
902 711 0.05
903 1082 0.08
904 383 0.03
905 965 0.07
906 282 0.02
907 6 0.00
910 1 0.00
911 1 0.00
916 1 0.00
921 1 0.00
922 5 0.00
925 2 0.00
926 4 0.00
930 1 0.00
931 10 0.00
933 2 0.00
934 3 0.00
935 1 0.00
936 6 0.00
937 3 0.00
940 1 0.00
941 1 0.00
943 1 0.00
944 1 0.00
945 2 0.00
946 3 0.00
947 15 0.00
948 12 0.00
949 19 0.00
950 12 0.00
951 16 0.00
952 14 0.00
953 15 0.00
954 6 0.00
955 3 0.00
956 5 0.00
957 10 0.00
958 15 0.00
959 15 0.00
960 11 0.00
961 21 0.00
963 9 0.00
964 14 0.00
965 5 0.00
966 12 0.00
967 6 0.00
968 2 0.00
969 3 0.00
970 4 0.00
975 5 0.00
976 3 0.00
978 2 0.00
979 5 0.00
980 3 0.00
981 10 0.00
982 3 0.00
983 4 0.00
984 6 0.00
985 3 0.00
986 5 0.00
987 5 0.00
988 11 0.00
989 2 0.00
990 4 0.00
991 3 0.00
992 9 0.00
994 5 0.00
995 9 0.00
996 6 0.00
997 9 0.00
998 7 0.00
1000 1 0.00
1001 2 0.00
1002 5 0.00
1003 7 0.00
1004 5 0.00
1006 1 0.00
1007 4 0.00
1008 3 0.00
1010 3 0.00
1011 6 0.00
1013 3 0.00
1014 9 0.00
1015 3 0.00
1016 1 0.00
1017 1 0.00
1018 1 0.00
1019 3 0.00
1021 8 0.00
1022 7 0.00
1023 5 0.00
1024 349 0.03
1025 428 0.03
1026 389 0.03
1027 593 0.04
1028 419 0.03
1029 601 0.04
1030 439 0.03
1031 438 0.03
1032 503 0.04
1033 418 0.03
1034 286 0.02
1035 374 0.03
1036 361 0.03
1037 321 0.02
1038 320 0.02
1039 391 0.03
1040 389 0.03
1041 271 0.02
1042 334 0.02
1043 326 0.02
1044 284 0.02
1045 312 0.02
1046 312 0.02
1047 249 0.02
1048 475 0.03
1049 160 0.01
1050 311 0.02
1051 275 0.02
1052 282 0.02
1053 151 0.01
1054 230 0.02
1055 496 0.04
1056 182 0.01
1057 203 0.01
1058 195 0.01
1059 263 0.02
1060 350 0.03
1061 224 0.02
1062 164 0.01
1063 182 0.01
1064 118 0.01
1065 153 0.01
1066 139 0.01
1067 136 0.01
1068 235 0.02
1069 134 0.01
1070 78 0.01
1071 92 0.01
1072 326 0.02
1073 79 0.01
1074 59 0.00
1075 79 0.01
1076 88 0.01
1077 239 0.02
1078 84 0.01
1079 89 0.01
1080 145 0.01
1081 190 0.01
1082 78 0.01
1083 274 0.02
1084 40 0.00
1085 39 0.00
1086 14 0.00
1087 114 0.01
1088 62 0.00
1089 23 0.00
1090 15 0.00
1091 24 0.00
1092 27 0.00
1093 15 0.00
1094 12 0.00
1095 48 0.00
1096 52 0.00
1097 21 0.00
1098 27 0.00
1099 8 0.00
1100 5 0.00
1101 13 0.00
1102 20 0.00
1103 23 0.00
1104 22 0.00
1105 7 0.00
1106 14 0.00
1107 10 0.00
1108 12 0.00
1109 9 0.00
1110 15 0.00
1111 4 0.00
1112 6 0.00
1113 7 0.00
1114 15 0.00
1115 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
ACAGAGTTCATCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTAAA
AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCACGCAG
AGAGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
Found at i:19221857 original size:26 final size:26
Alignment explanation
Indices: 19221827--19221879 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19221817 GTTGACTTAG
*
19221827 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19221853 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19221879 G
1 G
19221880 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19222180 original size:894 final size:893
Alignment explanation
Indices: 19220959--19223530 Score: 3425
Period size: 894 Copynumber: 2.9 Consensus size: 893
19220949 GTTGGCTTAG
* * * * * ** * **
19220959 GCATACGGAGTTCATTCCTTGTCTAAGATCGGACCAGACCGAGGGTTGCCACAGCACATACTGTT
1 GCATACAGAGTTCATTCC-AGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* *
19221024 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
19221089 ACCTGACCGGCGGCATTGGGGTTCCGATG-TCGGGGGGGCCGGGGGGGTGTGCGCACATGATTTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
19221153 TGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19221218 ACCCCCTTAAAGAGCATTTGAGATTTGATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTACAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* ** * *
19221283 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTATGCTTCGAGTTTGTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
19221348 TGCATGCCAACAGAAATACAAGGATAAAGTCTACCAAGTTTGGGGCCAAAGCTGCTTCCAAAACA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA-A
*
19221413 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
19221478 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-TAAAAAATGGC
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGC
* *
19221542 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGT
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
19221607 GCATCCCGTCTCTCT-GTC-ATCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGTCTTAGGC
647 GCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGTCTTAGGC
* ** * * * *
19221670 ATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTATGACAGTAGGATCAACAGC
711 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCAGCAGC
* * *
19221735 ACGCAGAGGGGGACCCGACCGATCCCTAACCTGTGCTTCCCGCCCCTCTGGCCGGTTGAGCGCCC
776 ACGCAGAGGGGGACCCGACCGATCCCTGACCTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
19221800 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
19221853 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGCATTGCGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCC-AGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* * *
19221918 CTCGAGCATGTGATGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
19221983 ACCTGACCGGTGGCATTGGGGTTCCGATGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
19222048 AATGGTTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
19222113 CCCCCTTAAAGAGCATTTGCGATTTTACAGGTCTACTGCCAGTAGCCATTAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* * *
19222178 GGGACACTTTTTTCGAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19222243 GCAAGCCAAAAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCATAACTCCTTACGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCAAAAAA
* * *
19222308 TTTTAAAAAATCCCGAAGCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
19222373 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
19222438 TGACATTCAGAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCGATCCATGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
19222503 ATCCCGTCTCTCT-GCCGTCGTAGTGCCCGCCCGCCCGCTCGTTTCATC-AGTTGTCTTAGGCAT
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGA-TTGTCTTAGGCAT
** * * *
19222566 ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGGTAGCAGGATCAACAGCAC
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCAGCAGCAC
* * * * * * *
19222631 GTAGA-GGGGACCCGACCGATCCCCGACCCGTGCTTCCGGCCCCTCTGGTCGGCTGAGCGCCTGC
778 GCAGAGGGGGACCCGACCGATCCCTGACCTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
19222695 ATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19222746 G-AT-C--AG---A--CC-G-----GA-CTGA---G-C--A---TTGCGGTAGCACATGCTGGGC
1 GCATACAGAGTTCATTCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
19222786 TCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * *
19222851 CCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATCATGTGCA
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * * * **
19222916 ATGGTTGCTGGTAGTTGGCCCTTCTATTGGCCCCCTATCGCTCATCAAACCTTAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
19222981 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* *
19223046 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTTTT
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGT
* *
19223111 GCATGCCAAAAAAAATACAAGGATCACGTCTAGCAAGTTTGGGG-CAGAAACCCCTTCCAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCAAAAAA
* * *
19223175 TTTTAAAAAATCCCAAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
19223240 CCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTGCAAGCCAAAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
19223305 TGGGACAT--AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 T-GG-CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
19223368 GCATCCTGTCTCTCTGGCCGGCGTAGTGCTGGCCCGCCCGCCCGCCCGTCTGCTCGTTTCGTCTG
647 GCATCCCGTCTCTCTGGCCGACGTA--G-T-----GCCCGCCCG-CC--C-GCTCGTTTCGTC-G
* * * * * ** * **
19223433 -TTGGCATAGGCGTACGGAATTCATTGCCAGTCTAAGATGGGACCAGACCGACGGTTGTGGCAGC
699 ATTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGC
* * *
19223497 AGGATCGGTAGCACGCAGAGGGGGACCCGGCCGA
764 AGGATCAGCAGCACGCAGAGGGGGACCCGACCGA
19223531 GTTTGGGGCC
Statistics
Matches: 1506, Mismatches: 147, Indels: 63
0.88 0.09 0.04
Matches are distributed among these distances:
867 510 0.34
868 63 0.04
869 3 0.00
870 2 0.00
871 1 0.00
872 1 0.00
873 1 0.00
876 12 0.01
877 4 0.00
879 1 0.00
880 79 0.05
881 13 0.01
882 1 0.00
884 2 0.00
886 1 0.00
889 2 0.00
891 1 0.00
892 2 0.00
893 102 0.07
894 698 0.46
895 7 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGTCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCAGCAGCACGCA
GAGGGGGACCCGACCGATCCCTGACCTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19224701 original size:26 final size:26
Alignment explanation
Indices: 19224665--19224717 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19224655 GTTGACTTAG
*
19224665 GCATACGGAGTTCAATCCCATTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
19224691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
19224717 G
1 G
19224718 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:19224918 original size:185 final size:184
Alignment explanation
Indices: 19224508--19224929 Score: 483
Period size: 185 Copynumber: 2.3 Consensus size: 184
19224498 GTTGTCTTAG
* * * ****
19224508 GCATACGGAGTTCATTCCCAG-CTAAGATTGGGCTAGACTGAGGGTTGTGGCAGTTGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCAACATCGACA
* *
19224572 ACACGCAATGGGGGACCCGACCGATACCCAGCTTACGCATCCCACCCCTCGACCGATTGAGCGTC
66 ACACGCAATGGGGGACCCGACCGATACCCAGCTTACGCATCCCACCCCTCGACCGACTGAGCGCC
* ** *
19224637 CGCACGCTAATTTTATGGGTTGACTTAGGCATACGGAGTTCAATCCCATTCTAA
131 CGCACGCTAATTTCATGGGTTGACTTAGGCATACAAAGTTCAATCCCAGTCTAA
* *
19224691 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TCAGACCGAGGGTTGCGGTAGCAACATCGCC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACT-AGACCGAGGGTTGCGGCAGCAACATCGAC
* * * ** * **
19224755 AACACGCAGA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGTCCTTCTGGTCGACTGAGC
65 AACACGCA-ATGGGGGACCCGACCGATACCCAGCTTACGCATCCCACCCCTC-GACCGACTGAGC
* * ** * *
19224819 GCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTT-AGTTCCCAGTCTAA
128 GCCCGCACGCTAATTTCATGGGTTGACTTAGGCATACAAAGTTCA-ATCCCAGTCTAA
* * * *
19224876 GCTTATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAG
19224930 ATCATGTTGG
Statistics
Matches: 199, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
183 22 0.11
184 75 0.38
185 101 0.51
186 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCAACATCGACA
ACACGCAATGGGGGACCCGACCGATACCCAGCTTACGCATCCCACCCCTCGACCGACTGAGCGCC
CGCACGCTAATTTCATGGGTTGACTTAGGCATACAAAGTTCAATCCCAGTCTAA
Found at i:19227044 original size:874 final size:864
Alignment explanation
Indices: 19224884--19235356 Score: 8803
Period size: 905 Copynumber: 11.9 Consensus size: 864
19224874 AAGCTTATGG
* * * **
19224884 AGTTCATTCCCAGTCTAAGATCGGA-CTGGACCG-AGGGTTGCGGCAG-ATCATG-TTGGCTCTG
1 AGTTCATTCCCAGTCTAAGATCAGACCTGGACCGAAGGCTTGCGGCAGCA-CATGCTGGGCTCAA
* * * * * *
19224945 GCATGTCCTGGTGCCGCATTTTTCTTCGTCAGGGAACCATCGTCAGG-GCATCACCGGAGAACCT
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATCG-CCGGAGCATCACCGAAGAACCT
* * * * * **
19225009 GACCGGCGGCAGTGGGGTTTCAACGATCGGGGGGGCC--GGGCGTGTGCGCACATGATGTATGAT
129 GACCGGCGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
19225072 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACA-CC
193 GGGTGCTGGTA--T----C----ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
19225136 CCTT-AA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
248 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
19225199 AAACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAATTTTTAGCTGAGTTTTTTTGTGCA
313 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
19225264 TGCCAATAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCCTCC-AAAAAATTT
378 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* ** * *
19225328 TAAAAAATCCTGAATTGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGGGTCGTCTTGCCA
443 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
19225393 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAACAATGGCATTGG
508 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
19225458 CACACAGAAATATGAAGATGGGCCTAAACCAACCTACCACCCTATCGATCCACGGTTTTCGCAT-
573 CA-GCAGAAATATGAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * * * * *
19225522 CCAGTCTTTCTGGCTAGCGTAGTGCCCGCCCGCTTGCCCGCCCGTTCATTTTGTCGATTGGGTTT
636 CCA-TCTCTCTGGCCAGCGTAGTGCCCGCCCCCAT--CCACCCGTTCGTTTCGTCGGTTGGCTTA
* * * * * *
19225587 GGCATACGGAGTTCATTCCCAATCTAAGATTGGGCCGAATCGAGGGTTGCGGTAGTA-GATCGGT
698 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGGC
** * * * * * *
19225651 AGCGTGCAGAAGGGGACGCGGTCGAT-CTTCGGCTTGCACATCCCGCCCCTCTGACCGGCTGAAC
763 AGCACGCAGAGGGGGACCCGGTCGATCCCT-GACTTGCGCATCCCGCCCCTCTGTCCGGCT-AAC
* * *
19225715 GCCCGCACAATCGTTTCGCGGGTTGACTTAGGCATACGG
826 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGA
* *
19225754 AGTTCATTCCCAGTCTAAGATCAGACC-GGACCG-AGGGTTGCGGCAGCACATGCTGGGCT-AGG
1 AGTTCATTCCCAGTCTAAGATCAGACCTGGACCGAAGGCTTGCGGCAGCACATGCTGGGCTCA-A
* * * *
19225816 GCTTGTGTTGGTGCCACATTTTTCTTCGT-CGGTGCACCATCGCCGGTGCACCACCGAAGAACCT
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCCGG-GCACCATCGCCGGAGCATCACCGAAGAACCT
* * * ** *
19225880 GACCGACGACATTGGGGTTCCGTCAATCCGGGGGGCCGGTTGGGTGTGCACACATGATGTGCGAT
129 GACCGGCGACATTGGGGTTCCGACGAT-CGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
19225945 GGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACTC
193 GGGTGCTGGTA--T----C----ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
19226010 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
248 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
19226075 ACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
313 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
19226140 TGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTT
378 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * *
19226205 TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAAGAGAAAACGAGTCGTCTTGCCA
443 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19226270 TGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATAG
508 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
19226335 CATGCA-AAACTATAAAGATGTGCCTAAATCCATCGACCACCCTATCGCATCCATGGCTTCCACA
573 CA-GCAGAAA-TATGAAGATGTGCCTAAA-CCACCTACCACCCTATCG-ATCCACGGCTTGCGCA
*
19226399 TCCCATCTCTCTGGCCAGCGTAGTGCCCCCCACCCATCCACCCGTTCGTTTCGTCGGTTGGCTTA
634 TCCCATCTCTCTGGCCAGCGTAGTGCCCGCC-CCCATCCACCCGTTCGTTTCGTCGGTTGGCTTA
* * ** * *
19226464 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGTCTAGATCGAGGGTTGCGGTAGCAGGATCAGT
698 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGGC
* * * * *
19226529 AGCATGTAGAGGGGGACCCGGTCGATCCCTGACTTGCGCAACCCACCCCTTTGTCCGGCTAAGCG
763 AGCACGCAGAGGGGGACCCGGTCGATCCCTGACTTGCGCATCCCGCCCCTCTGTCCGGCTAA-CG
* * *
19226594 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAA
827 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGA
* * *
19226632 AGTTCATTCCCAGTCTAAGCATACTAAGATCAGACTGGATCGAAGG-TTACGGTAGCACATGCTG
1 AGTTCATTCCCAGTCTAAG-AT-C--AGA-C---CTGGACCGAAGGCTTGCGGCAGCACATGCTG
* ** * * * * *
19226696 GGCTCAAGCATGTGCTGGTGTCGTATTTTTCTTC-ACCGGGTACCATCACCGGAGCATCATCGGA
58 GGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATCGCCGGAGCATCACCGAA
* * * *
19226760 GAACCTGACCGGTGACTTTGGGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATG
123 GAACCTGACCGGCGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
19226825 TGCGATGGGTGCTGGTA-C-TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
187 TGCGATGGGTGCTGGTATCATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
19226888 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
252 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
19226953 CTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTCTTTGTGCATGCC
317 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
19227018 AACAAAAAGACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
382 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * * * *
19227083 AGATCCCGAACCACAAAAAGTTTTGAAAATGGTGAAAAATAGAAAATGAGTCATCTTGCCATGAA
447 AAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
19227148 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-C
512 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGC
* * **
19227212 ATAGAAATATGAAGATGTGCCTAGACTCACCTACCACCCTATCGATCCACGGCTTGCGC-TTCTG
577 --AGAAATATGAAGATGTGCCTAAAC-CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
* * * *
19227276 TCTCTCTGGCC-GACGTAGTGCCCTCCTGCCAGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
639 TCTCTCTGGCCAG-CGTAGTGCCCGCC-CCCA-TCCACCCGTTCGTTTCGTCGGTTGGCTTAGGC
* * * *
19227340 ATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGA-CTGAGGGTTACGGTAGCAGGATCGGCAG
701 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGCGGTAGCAGGATCGGCAG
* * ** *
19227404 CACCCAGAGGGGGACCTGCCCGATCCCTGACTTGCGCATCCCGCCCTTCTAG-CCGGCTAAGCGC
765 CACGCAGAGGGGGACCCGGTCGATCCCTGACTTGCGCATCCCGCCCCTCT-GTCCGGCTAA-CGC
* *
19227468 CCGTACACTCGTTTCGTGGGTTGACTTAGGGATACGA
828 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGA
*
19227505 AGTTCATTCCCAGTCTAAGATCAGACCT-GACCG-AGGTTTGCGGCAGCACATGCTGGGCTCAAG
1 AGTTCATTCCCAGTCTAAGATCAGACCTGGACCGAAGGCTTGCGGCAGCACATGCTGGGCTCAAG
* * *
19227568 CATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGAAGAACCTGA
66 CATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATCGCCGGAGCATCACCGAAGAACCTGA
* * * * * *
19227633 TCGGCGACATTGGGGTTTCGACGATCAGGGGGCCCGGGGGGGTGTGCGGACATGATGTACGATTG
131 CCGGCGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
19227698 GTACTGGTACTTGGTCGTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCACACCCCC
195 GTGCTGGTA-----TC-----ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
19227763 TTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAATGTGTCCGAAATGAGGG-
250 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGGA
* * * * *
19227827 CACTTTTTTTAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTATTTTGGGAAT
314 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
19227892 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTT
379 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * * * *
19227957 AAAAGATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCAT
444 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
19228022 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGC
509 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
19228087 AGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCC
574 A-GCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * *
19228152 CGTCCCTCTGGCTGGC-TAGTGCCCGCCCGC--CCA--C--TCGTTTCGTCGGTAGGCTTAGGCA
637 CATCTCTCTGGCCAGCGTAGTGCCCGCCCCCATCCACCCGTTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
19228210 TACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGTGGAAGGAGGATCGGCAGCA
702 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGGCAGCA
* ** * * * * * *
19228275 CACAGAGGGATAGCC-ATCCGATCCCCCGATTTACGCATCTCGCCCCTCTGAT-CGGCTTAACGC
767 CGCAGAGGGGGACCCGGT-CGAT-CCCTGACTTGCGCATCCCGCCCCTCTG-TCCGGC-TAACGC
* *
19228338 CCGCACGCTCGTTTCGTGGGTTTACTTAGGCATACGA
828 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGA
* *
19228375 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGGGGCTT
1 AGTTCATTCCCAGTCTAAG---AT-CAG---A----C---CT--G----GACC-GA---AGGCTT
* * * ** *
19228440 GCGGC-GCACATGTTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCG
42 GCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATCG
* * * ** * *
19228504 -C----C-T----G-AGAACTTGATCGACGGTATTGGGGTTCCGGCGATCGGGGGGCCCGGGGGG
107 CCGGAGCATCACCGAAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
* * *
19228558 TGTACGCACATAATGTGCGATGAGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATC
172 TGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C----ATTGGCCCCCTATCCCTCATC
* * * * *
19228623 AAACCTCAAGAACTCACACCCCCTTAAAGAGAAGTTGAGATTTTACAGGTTTGCTGGCAATAGCC
227 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19228688 ATTAAAGAGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTT
292 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * ** ** *
19228753 TTAGTTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCAAATCTATGAAGTTTGAGGCCA
357 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
*** * * ** *
19228818 AAACTCCTTTTGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAAT
422 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
* * * ** ***
19228883 AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCAGTGTACCACCCTAT
487 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-
** * * ** ** * *** ** * **** * * *
19228948 C--G--ATCCACA--GC-TTGTGCATCCCATCTCTCTGGCCG-GCGTTGTGCTCGT-CC-TCC--
551 CAAGCCATAAAAATGGCATTG-GCAGCAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTA
* * * ** * ** * * * * **** * *
19229001 -CG--CC-CGTC-CGCTCATTTCGTCGGT-TGGCTTAG-GCA-T-ACGGAGTTCATTC-CCAG-T
615 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGC-CAGCGTAGTGCCCGCCCCCATCCACCCGTT
** * * * * * * ** *
19229055 C---T--AAGATTGG-ATCGG-A-CCGAGGGTT--GTGGCAG-C-AGGATCAGCAGCACGCGGA-
679 CGTTTCGTCGGTTGGCTTAGGCATACG-GAGTTCATTCCCAGTCTAAGATC-G--G-AC-CGGAT
** * * ** * *** * **** * * *
19229107 -G-GGGTACCCG-ACCA--ATCCCCGGTTTG-TGCA-TCCCACCC-CTC--TGGCC-GGCTTAGC
738 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAG-AGGGGGACCCGGTCGAT-CCCTGACTT-GC
* * * * * * * **** * * * * ***** * *
19229161 GC-CCGCACGCTCGTTTCGT-GGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTC-TAAGCAT
800 GCATC-C-CGCCCCTCT-GTCCGGCTAACGCCCGCACACTCG-TTTCGTGGGTTGACTTAGGCAT
* *
19229222 AAGG
861 ACGA
* * * * *
19229226 AGTTCATTCCCAGTCTAAGATCGGACC-GGATCG-AGTG-TTACGGCAGCACATGTTGGGCTCGA
1 AGTTCATTCCCAGTCTAAGATCAGACCTGGACCGAAG-GCTTGCGGCAGCACATGCTGGGCTCAA
* ** * *
19229288 GCATGTGTTGGTGCTGCA--TTT-TTC-T----------TCGCCGGAG-A--ACC--TG-ATC-G
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATCGCCGGAGCATCACCGAAGAACCTG
* * * *
19229332 A-C-G-G-TATTGGGGTTCCGACGATCGGGGGGCC-GAGGGGTGTACGCACATAATGTGC-ATTG
130 ACCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TG
*
19229391 AGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
194 GGTGCTGGTA--T----C----ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
19229456 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAG-CAATAGCCATTAAAGTGTTTGAAATGGGG
249 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
19229520 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTTTTGC
313 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGC
* * ** * * **
19229585 ATGCTAAGAAAAATACAAGGATCAAATATACCAAGTTTGAGGCCAAAACTCCTTCTGAAAAAATT
377 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
** * ** * *
19229650 TTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
442 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
19229715 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTG
507 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
19229780 GCAGGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCAT
572 GCA-GCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
19229845 CCCATCTCTCTGGCCGGCGTTGTGCCCGTCCTCCCGTCCGCCCGCTT-GTTTGGTCGGTTGGCTT
635 CCCATCTCTCTGGCCAGCGTAGTGCCCG-CC-CCCATCCACCCG-TTCGTTTCGTCGGTTGGCTT
* * * ** * * *
19229909 AGGCATACGGAGTTCATTCCCAATCTAAGATTGGACTGGGCCGAGGGTTGTGGCAGTAGGATCGG
697 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGG
* * * * * * * * ** *
19229974 TAGCACACAGAGGGGTACCCGATCGATCCCCGATTTACGCATCCCGCCCCTCTGGCCAACTTAGC
762 CAGCACGCAGAGGGGGACCCGGTCGATCCCTGACTTGCGCATCCCGCCCCTCTGTCCGGC-TAAC
* *
19230039 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
826 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGA
* * **
19230078 AGTTCATTCCTAGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGAT
1 AGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---CT--G----GACC-GA---AGGCTT
* * *
19230143 GCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCG
42 GCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATCG
* * * * * * **
19230208 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATTGGCGGGG-TTGGGGG
107 CCGGAGCATCACCGAAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGG-GGGGCCGGGGGG
* *
19230272 GTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAG
171 GTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C----ATTGGCCCCCTATCCCTCAT
* * * *
19230337 CAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGC
226 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
** * *
19230402 GGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTT
291 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * **
19230467 TTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACATCTATGAAGTTTGGGGCC
356 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * **
19230532 AAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAGGTTTTGAAAATTATGAAAAA
421 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAA
* *
19230597 TAGAAAATGAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
486 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
19230662 CAAGCCATAAAAATGGCATTGGCATGCACAAATATGGAGATGTACCTAAACCCACCTACCATCCT
551 CAAGCCATAAAAATGGCATTGGCA-GCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCT
* * * * ** *
19230727 ATCGATCCACGGCTTGCGCATCTCATTTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCG
614 ATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAGCGTAGTGCCCG-CC-CCCATCCACCCG
* * * * * *
19230792 CTT-GTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAA
677 -TTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA
* * * * * * * * * *
19230856 GGGTTGTGGCAGCAGCATCGACAGCACACAGAGGGGAACTCGG-CTGATCCCCGGCTTGCCCATC
741 GGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCTGACTTGCGCATC
* * * * * * ** * *
19230920 TCACCCCTCTGGCCGACTGAGCGCCTGCATGCTCGTTCCGTGGGTTGACTTAGGCATACGG
805 CCGCCCCTCTGTCCGGCT-AACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGA
* * *
19230981 AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTT
1 AGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---CT-GGA-C----C-GA---AGGCTT
** ** * * * *
19231046 GCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCATCGTCGGGGCACCATCA
42 GCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATCG
* ** * * *
19231111 CTGGAGCATCGTCGGAGAACCTAACCGACGACATTGGGGTTCCGACGATCGAGGGGGCCGCGGGG
107 CCGGAGCATCACCGAAGAACCTGACCGGCGACATTGGGGTTCCGACGATCG-GGGGGCCG-GGGG
*
19231176 GGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
170 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C----ATTGGCCCCCTATCCCTCA
* * *
19231241 TCAAACCTTGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG
225 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
19231306 CCATGAAAATGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCAAGT
290 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
19231371 TTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
355 TTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
19231436 CCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAA
419 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAA
* * *
19231501 AATAGAAAACGAGTCGTCTTGCCATGAAGCTTCATGTGAAGGTTTAAGGGACCATTGTATGAATT
484 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
19231566 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
549 TACAAGCCATAAAAATGGCATTGGCA-GCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACC
* * ** *
19231631 CTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCTGGCGTAGTGCCCG----C--CCGCCCG
612 CTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCCCCATCCACCCG
* * * * ** * * *
19231690 CTCATTTCGTCGATTGGCTTAGGCATACGGAGTTAATTCCTTGTCTAAGATCAGACC-GAACTAA
677 TTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GA
* * * * * * * * * *
19231754 GGGTTGCGGTAACAGGATTGGCGGCATGCAGAGAGGGACCCCGTCAATCCCCGGCTTGCGCATCT
741 GGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGACTTGCGCATCC
* * * * ** * *
19231819 CGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTAATTTCGTGGGGTGACTTAGGCATACGG
806 CGCCCCTCTGTCCGGCT-AACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGA
* *
19231879 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT
1 AGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C-----T-GGA-CCGA---AGGCTT
* * * *
19231944 ACGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTCCTTCGTCGGGGCACCATCG
42 GCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATCG
* * * * * *
19232009 CCAGAGCATCATCGGAGAACCTGACTGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGCGGGG
107 CCGGAGCATCACCGAAGAACCTGACCGGCGACATTGGGGTTCCGACGATC-GGGGGGCCG-GGGG
*
19232074 GGTGTGCGCACATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
170 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C----ATTGGCCCCCTATCCCTCA
*
19232139 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
225 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
19232204 CTAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAG
290 C-CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
19232269 -TTTTAGCTGAATTTTTTTGTGCATG-CAAACAAAAGTACAGGGATCATGTCTACCAAGTTTGTG
354 TTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
19232332 GCCAAAACTACTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAG-TTTGAAAAATCGTGA
418 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTG-AAAATCGTGA
* * *
19232396 AAAATATAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAA
482 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
19232461 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
547 TTTACAAGCCATAAAAATGGCATTGGCA-GCAGAAATATGAAGATGTGCCTAAA-CCACCTACCA
* ** * * * *
19232526 CCCTATCGATACATAGCTTGCACATCTCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCAGCC-
610 CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAG-CGTAGTGCCCGCCC-CCATCCA
* * * * *
19232589 CTCTCGCTCATTTCGTCAGTTGGCTTAGGCTTATGGAGTTCATTCCCAGTCTAAGATCGGACCGG
673 C-C-CGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* ** * * * * * * ** *
19232654 A-CTGAGGGTTGCTGCCGGAGGATCCGCAGAACGTAGAGGGGGACTCGATCGATCCCCAACTTGT
736 ATC-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGACTTGC
* * * * * * *
19232718 GCATCTCGCTCCAT-TGGT-CGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATC
800 GCATCCCGC-CCCTCT-GTCCGGCT-AACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATA
*
19232781 CGG
862 CGA
* ** * *
19232784 AGTTCTTTCCTGGTCTCAGCATACGGAGTTCATTCCTAGTGTCAGATCGGACCGGACCAAGGGTT
1 AGTTCATTCCCAGTCTAAG-AT-C--AG---A---C------C---T-GGACC-G---AAGGCTT
* ** * *
19232849 G-GGACAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTATCTTCG-CCGGGGCACCAT
42 GCGG-CAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCGTCC-GGGCACCAT
* ** * * * * **
19232912 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG-ATGGGG
105 CGCCGGAGCATCACCGAAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGG
*
19232976 GGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
170 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C----ATTGGCCCCCTATCCCTCA
* *
19233041 TCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAG
225 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
19233106 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
290 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
19233171 TTTTAGCTGAATTTTTTTGTGCCTGCCAACAAAAATACAAGGATCACATCTACCAATTTTGGGGC
355 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
19233236 CAAAAATCTTTCCCAAAAAATTTTAAAAAATCCCGAACCACAAAATGTTTTGAAAATCGTGAAAA
420 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAA
* ***
19233301 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAACTTTTAAGGGACCATTGTATGAATTT
485 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
19233366 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
550 ACAAGCCATAAAAATGGCATTGGCA-GCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCC
* * * ** * *
19233431 TATCGATCCACGGCTTGTGCATCCCGTCTCTCTGG-CAGGCGTAGTGCCCACCTGCCCGCCCTCT
613 TATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCA-GCGTAGTGCCCGCC--CCCATCCACC
* * * * *
19233495 CGCTT-GTTTCGTCGCTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACC
675 CG-TTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC
* * * * * * * * *
19233559 AAGGGTTACGGCACCAAGATCGGCAGTACGTAGAGGGGGACCCGGTCGAT-CCTCGGCTTGCACA
739 GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCT-GACTTGCGCA
* * * * * * *
19233623 TCCCGCCACTCTGGT-CGGTTGAGCGCCCGCACGCTCGTTCCATGGGTTGATTTAGGCATAC-A
803 TCCCGCCCCTCT-GTCCGGCT-AACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGA
* * *
19233685 GAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGT
1 -AGTTCATTCCCAGTCTAAG---AT-CAG---A----C---C------TGGAC-CGA---AGGCT
* *** * * * *
19233750 TGCGGCAGCACATTCTGGGCTTGGGCATGTGTTGGTGCCACATTTTTTTTCATCGGGGCACCATC
41 TGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATC
** * * * * *
19233815 GTTGGAGCAT-AGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGAGCCAGCGG
106 GCCGGAGCATCA-CCGAAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCC-G-GG
* * * *
19233879 GGGGTGTTCACACATGATGTGAGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
168 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C----ATTGGCCCCCTATCCCT
* *
19233944 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGT
223 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * ** ** *
19234009 AGCCATTAAAGTGTCTCAAATGGGGATAGTTTTTTCAAATGGTCGTAAAATCTTGTATGCTTCAA
288 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
19234074 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGG
353 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** * * *
19234139 ACCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAA
418 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAA
* ** *
19234204 AAATAGACAACGAGTTATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
483 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
19234269 TTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCAC
548 TTACAAGCCATAAAAATGGCATTGGCA-GCAGAAATATGAAGATGTGCCTAAA-CCACCTACCAC
** **
19234334 CCTATCGATCCACGGCTTGCTTATCCTGTCTCTCTGGCC-GACGTAGTGCCCG----------CC
611 CCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAG-CGTAGTGCCCGCCCCCATCCACC
* * *
19234388 CGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGATCAGATT
675 CGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGATC
* * * * * * * * * *
19234452 GAGGGTTGCGGTAGCAGGATCGACACCACACAGATGGGGAACCGGCCGATCCCCGGCATACGCAT
739 GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTGACTTGCGCAT
* * * * ** * *
19234517 CCCTCCCCTCTAG-CCGGCTAAGTGCCCGTACGCTCAATTCATGGGTTGACTTAGGCATACGG
804 CCCGCCCCTCT-GTCCGGCTAA-CGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGA
* *
19234579 AGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGTTT
1 AGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C-----T-GGACC-GA---AGGCTT
* ** * * * *
19234644 GCGGCAGCACATGCTGGGATCGGGCATGTGCCGGTGCCGCATTTTTCTTCGTCGGGGCACCATCA
42 GCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATCG
* * * *
19234709 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCC--GGGGG
107 CCGGAGCATCACCGAAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
* *
19234772 TGTGCACACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
172 TGTGCGCACATGATGTGCGATGGGTGCTGGTA--T----C----ATTGGCCCCCTATCCCTCATC
* * * * *
19234837 AAAGCTCGAGAACTCACACCCCCTTAAAGAGTATTCGAGATTTTACAGGTTTGCTGGCAGTAGCA
227 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
19234902 ATTAAAGTCTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
292 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
19234967 TTATCTGATTTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
357 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
** * * * * ** *
19235032 AAAAACCTTCCGAAAAATTTTTAAAAAATCCCGACCCGTAAAAAGTTTCAAAAATCATGAAAAAT
422 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
* *
19235097 AGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
487 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
19235162 AGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTA
552 AAGCCATAAAAATGGCATTGGCA-GCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTA
** **
19235227 TCGATCCACGGCTTGCTTATCCTGTCTCTCTGGCC-GACGTAGTGCCCG----------CCCGTT
615 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAG-CGTAGTGCCCGCCCCCATCCACCCGTT
* * *
19235281 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGGATCAGATCGAGGG
679 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGG
* *
19235346 TTACGGCAGCA
744 TTGCGGTAGCA
19235357 CATGCTGCGC
Statistics
Matches: 8112, Mismatches: 1156, Indels: 651
0.82 0.12 0.07
Matches are distributed among these distances:
810 1 0.00
811 199 0.02
812 199 0.02
813 3 0.00
815 5 0.00
816 2 0.00
817 6 0.00
818 10 0.00
819 3 0.00
820 3 0.00
821 2 0.00
822 3 0.00
823 3 0.00
824 3 0.00
825 9 0.00
826 36 0.00
827 2 0.00
828 2 0.00
829 10 0.00
830 8 0.00
831 1 0.00
832 2 0.00
834 4 0.00
835 3 0.00
837 2 0.00
839 1 0.00
840 1 0.00
841 5 0.00
842 5 0.00
843 7 0.00
844 5 0.00
845 8 0.00
846 4 0.00
847 5 0.00
848 7 0.00
849 6 0.00
850 8 0.00
851 50 0.01
852 50 0.01
853 11 0.00
854 3 0.00
855 5 0.00
856 7 0.00
857 4 0.00
858 4 0.00
859 10 0.00
860 3 0.00
861 7 0.00
862 7 0.00
863 8 0.00
864 55 0.01
865 101 0.01
866 14 0.00
867 3 0.00
868 5 0.00
869 96 0.01
870 135 0.02
871 91 0.01
872 33 0.00
873 288 0.04
874 385 0.05
875 8 0.00
876 174 0.02
877 647 0.08
878 202 0.02
879 12 0.00
880 8 0.00
881 4 0.00
882 8 0.00
883 338 0.04
884 33 0.00
885 2 0.00
886 90 0.01
887 50 0.01
888 5 0.00
889 554 0.07
890 1 0.00
891 6 0.00
892 14 0.00
893 299 0.04
894 5 0.00
895 55 0.01
896 17 0.00
897 269 0.03
898 458 0.06
899 63 0.01
900 5 0.00
901 67 0.01
902 681 0.08
903 644 0.08
904 215 0.03
905 938 0.12
906 278 0.03
907 3 0.00
908 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
AGTTCATTCCCAGTCTAAGATCAGACCTGGACCGAAGGCTTGCGGCAGCACATGCTGGGCTCAAG
CATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATCGCCGGAGCATCACCGAAGAACCTGA
CCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTATCATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGA
ACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGCAGAAATATG
AAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCA
GCGTAGTGCCCGCCCCCATCCACCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACC
CGGTCGATCCCTGACTTGCGCATCCCGCCCCTCTGTCCGGCTAACGCCCGCACACTCGTTTCGTG
GGTTGACTTAGGCATACGA
Found at i:19229228 original size:26 final size:26
Alignment explanation
Indices: 19229192--19229244 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19229182 GTTGACTTAG
*
19229192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
19229218 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
19229244 G
1 G
19229245 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:19230106 original size:26 final size:26
Alignment explanation
Indices: 19230070--19230122 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19230060 GTTGACTTAG
* *
19230070 GCATACGGAGTTCATTCCTAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
19230096 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
19230122 G
1 G
19230123 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:19231002 original size:26 final size:26
Alignment explanation
Indices: 19230973--19231025 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19230963 GTTGACTTAG
*
19230973 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19230999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19231025 G
1 G
19231026 ATCAAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19231907 original size:26 final size:26
Alignment explanation
Indices: 19231871--19231923 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19231861 GGTGACTTAG
19231871 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19231897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19231923 G
1 G
19231924 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19232828 original size:26 final size:26
Alignment explanation
Indices: 19232776--19232828 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19232766 GTTGACTTAG
* * *
19232776 GCATCCGGAGTTCTTTCCTGGTCTCA
1 GCATACGGAGTTCATTCCTAGTCTCA
*
19232802 GCATACGGAGTTCATTCCTAGTGTCA
1 GCATACGGAGTTCATTCCTAGTCTCA
19232828 G
1 G
19232829 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.25, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTCA
Found at i:19233707 original size:26 final size:26
Alignment explanation
Indices: 19233678--19233730 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19233668 GTTGATTTAG
19233678 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATA-AGAAGTTCATTCCCAGTCTAA
*
19233704 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
19233730 G
1 G
19233731 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:19235901 original size:19 final size:19
Alignment explanation
Indices: 19235877--19235919 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
19235867 CAAGCCATAA
*
19235877 AAATGGCATTCGCATCTAG
1 AAATGGCATTCGAATCTAG
* *
19235896 AAATGGCATTGGAATGTAG
1 AAATGGCATTCGAATCTAG
19235915 AAATG
1 AAATG
19235920 TGAAGATGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.26
Consensus pattern (19 bp):
AAATGGCATTCGAATCTAG
Found at i:19236204 original size:26 final size:26
Alignment explanation
Indices: 19236174--19236227 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
19236164 TGGGTTGACT
19236174 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
19236200 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
19236226 TA
1 TA
19236228 AGATTGGATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:19237565 original size:707 final size:707
Alignment explanation
Indices: 19236200--19237595 Score: 2129
Period size: 707 Copynumber: 2.0 Consensus size: 707
19236190 ATTCCCAGTC
* * * * * ** *
19236200 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGGTGGGACATGCT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACAGCAGCACATGCT
* * * *
19236265 GGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTTGTCAGGGCACCATCGCCAGAGCATCGTCGG
66 GGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGCCAGGGCACCATCACCAGAGAATCGTCGG
* * * *
19236330 AGAACCTGACCGACGGCATTAGGGTTCCGATGATTGAGTGGGTCGGGGGGGTGTGCGCACATGAT
131 AGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGAT
*
19236395 GTGCAATGGGTGCTGGTACTTGGCCCCTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAACT
196 GTGCAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
19236460 CACACCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
261 CACACCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
19236525 AATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
326 AATAGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
* * * * *
19236590 TTTGCATGCCAAAAAATAATACAAGGATCACGTCTACTAAGTTTCGAGCCAAAACTCTTTTCAAA
391 TGTGCATGCCAAAAAATAATACAAGGATCACGTCTACCAAGTTTCGAGCAAAAACTCCTTCCAAA
* * * *
19236655 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
456 AAAAGTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
* * *
19236720 CTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATG
521 CTTGCCACGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATG
* *
19236785 GCAGCGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTT
586 GCAGCGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCAACAACCCTATCGATCCACAGCTT
* *
19236850 GCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCTCGATTCGTCGATTAGCT
651 GAGCATCCCGTCTCTCTAGCCGAAGTAGTGCCCGCCCGCTCGATTCGTCGATTAGCT
* *
19236907 TAGGCATACGGAGTTCATTCCCAGTTTAAGATTGGACCAGACCGAGGGTTACAGCAGCACATGTT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACAGCAGCACATGCT
* *
19236972 GGGCTTGGGCATGTGCTGGTGCCGTA-A-TTTTCTTCGCC-GAGGCACCATCACCGGAGAATCGT
66 GGGCTCGGGCATGTGCTGGTG-C-TACATTTTTCTTCGCCAG-GGCACCATCACCAGAGAATCGT
** ** * * *
19237034 CGGAGAACCTGGTCGGTGGCGTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
128 CGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACAT
* * *
19237099 GATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
193 GATGTGCAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
19237164 ACTCACAGCCCCTTAAAGAGCATTTT-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
258 ACTCACA-CCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
19237228 CTGAAATAGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
322 CTGAAATAGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AT
* * * *
19237293 TTTTTTGTGCATGCCAAAAAA-AATACAAGGATCACGTTTACCAAGTTTGGGGTAAAAACTCCTT
386 TTTTTTGTGCATGCCAAAAAATAATACAAGGATCACGTCTACCAAGTTTCGAGCAAAAACTCCTT
* *
19237357 CCAAAAAAAGTTTAAAAAATC-CGAAATCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACG
451 CCAAAAAAAGTTTAAAAAATCTCG-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
19237421 AGTCATCTTGCCATGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATGTACAAGCCATA
515 AGTCATCTTGCCACGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATGTACAAGCCATA
** * * *
19237486 AAAATGGCATTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACAACCCTATCGATCCA
580 AAAATGGCAGCGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCAACAACCCTATCGATCCA
*
19237551 CAGCTTGAGCATCCCGTCTCTCTGGCCGAAGTAGTGCCCGCCCGC
645 CAGCTTGAGCATCCCGTCTCTCTAGCCGAAGTAGTGCCCGCCCGC
19237596 CTGCCCGCCC
Statistics
Matches: 620, Mismatches: 63, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
706 3 0.00
707 573 0.92
708 42 0.07
709 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (707 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACAGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGCCAGGGCACCATCACCAGAGAATCGTCGG
AGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGAT
GTGCAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
CACACCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATAGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
TGTGCATGCCAAAAAATAATACAAGGATCACGTCTACCAAGTTTCGAGCAAAAACTCCTTCCAAA
AAAAGTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
CTTGCCACGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATG
GCAGCGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCAACAACCCTATCGATCCACAGCTT
GAGCATCCCGTCTCTCTAGCCGAAGTAGTGCCCGCCCGCTCGATTCGTCGATTAGCT
Found at i:19239376 original size:26 final size:26
Alignment explanation
Indices: 19239346--19239398 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19239336 GTTGACTTAG
*
19239346 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19239372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19239398 G
1 G
19239399 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19241594 original size:903 final size:900
Alignment explanation
Indices: 19238812--19245419 Score: 8237
Period size: 903 Copynumber: 7.4 Consensus size: 900
19238802 AGTAGCCATA
* * *
19238812 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTATCTGAATTTTTTTGTGCATGCCAATAAAA
1 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
19238877 ATAC-AGTGATCATGTCTACCAAGTTTGGGGCCAAATCACCTTCCGAAAAAATTTTAAAAAATCC
66 ATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCC
** * *
19238941 TAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
130 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* ** *
19239006 CGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCTTGCAAAAA
195 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * * * *
19239071 TATGAAGATGTGCTTAAACCCACCTAACAGCCTATCGATCCACGGCTTGCGTATCTCGTCTCTCT
260 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
19239136 GGCCGGCGTAGT---GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
325 GGCC-GCGTAGTGCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * * * *
19239198 TCATTCCTAGTCTAAGATCGGACCGAACCGAGGGTTACGGTACCAAGATCGACAGCACGCAGAGG
389 TCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGTAAAGG
* * * * * * *
19239263 GGGACCTGGTTGATCCCCGGCTTACGCATCCCACCCCTCTGGTCGGCTGAGCGCCCGCGCGCTCG
454 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
19239328 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAG
519 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * ** * * *
19239393 TCTAAGATCAGACCAGACCAAGGGTTGCGATAGCAAATTCTGGGCTCGAGCATGTG-TCGGTGTC
584 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCT-GGTGCC
* * * *
19239457 GTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGG
648 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACC-GCGGCATCGGG
* * * * * * * * *
19239522 GTTTCGATGATC-GGGGGGCCGGGGGGTTTTCGCACGTGATGTGTGGTGGGTGCTGGTAATTGGC
712 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGC
* *
19239586 CCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
777 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * *
19239651 GATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTCAAATGGGGATAGTTTTTTC
842 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
19239710 AAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGCGCATTCCGACAAAA
1 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
** * * ** * **
19239775 ATACAAGGATCATTTCTACCAAGTTTGGGACCAAAACTCTTTCTGAAAAAATTTTAAAAAATCTT
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCC
* ** * *
19239840 GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTAAC
131 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
19239905 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCCTTGGCACACAGAAAT
196 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* *
19239970 ATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTG
261 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
19240035 GCCGATGTAGTGCCCGCCCGCCTGCCTGTACGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGT
326 GCCG-CGTAGTG-CCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
19240100 TCATTCCCAGTCTAAGATCAGATCAGA-TCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAAAG
389 TCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTACGGCAGCAGGATCGGCAGCACGTAAAG
** * * ** * * *
19240164 GGGGACCCGGCCAATCGCCGGCTTATGCATCCCTCCCCTCTGGCCGACTGAGCACCCGCACGCTC
453 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
19240229 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A
518 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* *
19240276 -TC---GA----ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAACATGTGCTGGTACC
583 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
* * * **
19240333 GTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA-CTGG
648 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACC-GCGGCATC-GG
* ** * * * * *
19240397 AGTTCCGGTGATC-GAGGGGCCTGGGGGGTGTGCGCACAAGATGTGTGATGGGTGCTAGTACTTG
711 GGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTG
* * *
19240461 GCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAATTTACA-CCCCTTAAAGAGCATTT
775 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
19240525 GAGATTTTACAAGTTTGCTGCCAGTAGCAATTAATGTGT-TCGAAATGGGGACACTTTTTTC
840 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTC
* * *
19240586 AAATGGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATTTTTTTGTGCATGCCATCAAAA
1 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *** **
19240651 ATAGAAGGATCATGTCTACCAAGTTTTTTGCCAAAACTCCTTCCAAAAAAATTTCCAAAAATCCC
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCC
* *
19240716 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
131 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
19240781 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CGTAAAATTGGCATTGGCACACAAAAAT
196 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* ** *
19240845 ATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCGTGGCTTGTGCATCCCGTCTCTCTG
261 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
** * * *
19240910 GTTAGCGTAGGGACCGCCCGTCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
326 G-CCGCGTAGTG-CCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * ** * * * *
19240975 TCATTCACAGTCTAAGATCAGATCGGACTGAAGGTTGTGGCAGCAGGATCGGTAGCACGGAGAGT
389 TCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGTAAAGG
* * * * * *
19241040 GGGACCCGATCGATCCCTGACTTGTGCATCCCGCCCCTTTGGCCGGCTGAGTGCCCGCACACTCG
454 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * * *
19241105 TTTCGTGGGTTAACTTAGGCAGACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAG
519 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** * *
19241170 TCTAAGATCGGATTGGACCGAGGGTTGCGGCTGCACATACTGGGCTCGAGCATGTGCTGGTGCCG
584 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG
* * * *
19241235 CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGATCGAAGGCATCGGGG
649 CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCG-CGGCATCGGGG
*
19241300 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGCACTTGGC
713 TTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGC
*
19241365 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
777 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
19241430 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCCGAAATGGGGACACTTTTTTC
842 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* ** *
19241489 AAATGGTCCCAAAATCTTGTACACTTTAAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
1 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * ** * * * *
19241554 ATAGAGGGATCATGTCTA-CACCTTTTGGGGCTAGAACTCCTTCCAAAACAATTTTAAAAAATCC
66 ATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCC
** *
19241618 CGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAAC-ATGTCGTCTTGCCATGAAACTTC
130 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTC
* *
19241682 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
194 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
19241747 ATATAAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTC
259 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * *
19241812 TGGCCGGCGTAGTGCCAGCCCGCCCGTCCGTCTGTTCATTTCATCAGCTGGCTTAGGCATACGGA
324 TGGCC-GCGTAGTGCC-GCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
** * * * * ** * *
19241877 GTTCATTCTGAGTCTAAGAAT-GGATCAGACCGAGGGTTACGATAGTAGGATCAGCAGCACGTAA
387 GTTCATTCCCAGTCTAAG-ATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGTAA
* * * * * *
19241941 AGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGGCCCTCTGGCCGACTGAGCGCCTGCACGC
451 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
19242006 TCG-TTCTGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACAGAGTTCATTC
516 TCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
** * * * ** *
19242070 CCAGTCTAAGATCGGAATGGACCAAGGGTTACGACAGCACATGCTATGCTCGGGCATGTGCTGGT
580 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGT
* *
19242135 GCCGCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCCGCGGCA-C
645 GCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA-CCGCGGCATC
*
19242199 TGGGGTTCCGACGATCTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACT
709 -GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACT
* *** *
19242264 TAGCCCTTATATTGGCCCCCTATATATCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCAT
773 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
19242329 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTATC
838 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* ** *
19242392 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATCGTTTTATGCATGCCAACAAAA
1 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
19242457 ATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTCTAAAAAAATTTAAAAAAATCTC
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCC
* * * * * *
19242522 GAGCTGCTAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTCCAC
131 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * * *
19242587 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTTGCATGCAAAAAG
196 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * * * *
19242652 ATGAAGATGTGCCTAAACCCACTTGCTACCCTATCAATCCACAGCTTGCGCATCCCGTCTCTCTG
261 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* ** * **
19242717 GTCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTACACATACGGAGT
326 G-CCGCGTAGTG-CCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** * * * * **
19242782 TCATTCGCAGTCTAAGATTGGACCGGATTGAGGGTTACGGTAGCATGAAT-GGCAGCATGTAGTG
389 TCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCA-GGATCGGCAGCACGTAAAG
* * * * * * *
19242846 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGGCGACTGAACGCCTGAATGCTC
453 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *** * * *
19242911 ATTTCATGGGTTGACTTACATATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCACTCCCA
518 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
** * * *
19242976 GTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGTATGTGCTGGTGCC
583 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
* ** ** * *
19243041 GCATTTTTCTTCGTCGGGGTGCCATCGCTAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGA
648 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACC-GCGGCATCGGG
19243106 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GCTACTTGG
712 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGC-ACTTGG
*
19243170 CCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
776 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
19243235 AGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
841 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * ** *
19243295 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTATTTGCACATGGCAA-AAAA
1 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * *
19243359 ATATATGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCC
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCC
** *
19243424 GAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
131 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
19243489 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
196 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * *
19243554 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTTTCTTTG
261 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
19243619 GCCGACGTAGTGCCCACCCGCCCGCCCGTCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGAGT
326 GCCG-CGTAGTG-CCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * * * * * *
19243684 TCATTCCCAGTCTAAGATCAGACTGAACCAAAGGTAATGGCAGCAAGATCGACAGCACATAAAGG
389 TCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGTAAAGG
* * *
19243749 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC-GGCCGGCTGAGCGCCCGTATGCTTG
454 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
19243813 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAG
519 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
19243878 TCTAAAATCGGACCGGACCGAGGGTTTCGGCAGCACATGCTGGGCTC-AGGCATGTGCTGGTGTC
584 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCC
* * * * * * * *
19243942 ACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCAACGACATTGGG
648 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACC-GCGGCATCGGG
* * * * * * * *
19244007 GTTCGGACGATCGAGAGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGATGGTGGTACTTGA
712 GTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGG
* * *
19244072 CCCTTATATTGGGCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
776 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * * *
19244137 AGATTTTACAGGGTTGCTGCCAGTAACCGTTACAGTGTCTGAAATTGGGACACATTTTTC
841 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
19244197 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTTAATTTTTTTGTTCAAGCCAACAAAA
1 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
19244262 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCC-GAAAAATTTAAAAAAATCCT
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCC
* * *
19244326 GAACCACAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
131 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
19244391 ATGGAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
196 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * **
19244456 ATGAAGATATACCTAAACCCACCTACTGCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
261 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
19244521 GCCGACGTAGT---GCCCACCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTG
326 GCCG-CGTAGTGCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * ** * * *
19244579 CATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATTAGCAACATGCAAAGGG
390 CATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGTAAAGGG
* * * *
19244644 GGACCCGATCGACCCCCGGCTTGCCCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGT
455 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
** *
19244709 TTCATGGGTTGACTTACCCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
520 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
19244774 CTAAGATCGGACCGGACCAAGGGTTGCGACAACACATGCT--GCATGCGAGCATGTGCTGGTGCC
585 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC-T-CGAGCATGTGCTGGTGCC
* * * * * ***
19244837 GTATTTTTCTTCGCCGGGGCACCATCGTCGGAACATCATCGAAGAACCTGACCTGCGGCATTAAG
648 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACC-GCGGCATCGGG
* * * * * * * *
19244902 GTTCCGGA-TATCAAGGGGGTCAGGGGGGTCTGCGTACATGATATGCGATGGGTGCTGGTACTTG
712 GTTCC-GACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTG
* *
19244966 GCCGTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
775 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
19245031 GAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAATGTCTGAAAT-GGCACACTTTTTTC
840 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
19245091 AAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAA
1 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
19245156 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAAGTTT-GAAAAATTC
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA-TTTAAAAAAATCC
** * * * *
19245220 TAAACTGCAAAAAGTTTCAAAAATTGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCA
130 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * *
19245285 CGTGAAGGATTAAGGGACCATTTTAGGAATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAA
195 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* *
19245350 TATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCC-TCCCCTC
260 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT-CTCTC
19245414 TGGCCG
324 TGGCCG
19245420 GCTGAGCGCC
Statistics
Matches: 4946, Mismatches: 686, Indels: 159
0.85 0.12 0.03
Matches are distributed among these distances:
875 277 0.06
876 392 0.08
877 79 0.02
880 3 0.00
881 2 0.00
883 2 0.00
884 3 0.00
893 5 0.00
894 233 0.05
895 519 0.10
896 13 0.00
897 4 0.00
898 303 0.06
899 2 0.00
900 2 0.00
901 316 0.06
902 1057 0.21
903 1302 0.26
904 428 0.09
905 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCC
GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGCGTAGTGCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGTAAAGGGG
GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA
TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGCGGCATCGGGGTTC
CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
Found at i:19242056 original size:26 final size:26
Alignment explanation
Indices: 19242027--19242079 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19242017 GTTGACTTAG
* *
19242027 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19242053 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19242079 G
1 G
19242080 ATCGGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19243861 original size:26 final size:26
Alignment explanation
Indices: 19243831--19243882 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19243821 GTTGACTTAG
19243831 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19243857 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19243883 AATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19244757 original size:26 final size:26
Alignment explanation
Indices: 19244727--19244778 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19244717 TTGACTTACC
19244727 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
19244753 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
19244779 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:19245494 original size:26 final size:26
Alignment explanation
Indices: 19245458--19245536 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
19245448 GTTGACTTAG
***
19245458 GCATACGGAGTTCATTCCTTTTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19245484 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19245510 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19245536 G
1 G
19245537 ATCAGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19246416 original size:26 final size:26
Alignment explanation
Indices: 19246386--19246438 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19246376 GTTGACCTAG
19246386 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
19246412 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19246438 G
1 G
19246439 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19247331 original size:26 final size:26
Alignment explanation
Indices: 19247291--19247341 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19247281 TGACTTTGGC
* *
19247291 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTAATTCCCAGTATAAGT
19247317 ATACGGAGTTAATTCCCAGTATAAG
1 ATACGGAGTTAATTCCCAGTATAAG
19247342 ATCGGACAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTAATTCCCAGTATAAGT
Found at i:19247738 original size:902 final size:900
Alignment explanation
Indices: 19245484--19250760 Score: 6838
Period size: 898 Copynumber: 5.9 Consensus size: 900
19245474 CCTTTTCTAA
*
19245484 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * *
19245549 CGAGGGTTAC-GACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGG
66 CGAGGGTTGCAG-CAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * *
19245613 GCACCATTGTCGGAGCATCGTCGGAGAACCTGAACGATGACATTGGGGTTCCGACGATCGGGGGG
130 GCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
19245678 G-TCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATGTTGGCCCCCT
195 GCT-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
19245742 ATCCCTCATCAAACCTCAAGAA-TCACAGCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * * *
19245806 GCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTTACATGGTCACAAAATGTTGTACA
324 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * * ** *
19245871 CTTCCAGATTTTAGCTGAATTTTTTTGTGCCTCCCAACAAAAATATAAGCATCACGTCTAAAAAT
389 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * ** *
19245936 TTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCATAAAAAGATTCAAAAAT
454 TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT
* * ** *
19246001 CGTGAAAAATAGAAAATGAGTCGTCTCGCCATGAAACTTCACGCAAAGGCGTAAGGGACCATTGT
519 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * ** *
19246066 ATGATTTTACAAGCCATAAAAATGGCATCGGCATGCAAAAATATGAAGATGTGCCTAAACTCACC
584 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACC
* * * * ** * **
19246131 TACCACCCTATCGATCCACGACTTGTGCATCCCGTCTTTTTGTTCGGCGTAGTGCCTGCCCAACC
649 TACCACCCTATCGATCCACG-CTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * *
19246196 GCCCGCCTGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
713 G-CCTCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* *** * * ** * * * * * *
19246261 CAAATTAAGGGTTACGGCAATAAAATTGACAGCACGTAGAGGGGGACCCAGCCGATCCCCGACTT
776 CAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTT
* * * * *
19246326 ACGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACCTAG
841 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
19246386 GCATACAGAGTTCATTCCCAGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * *
19246451 AGAGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGG
66 CGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG
* * * * ** *
19246515 GCACGATCGCCGGAGCCTCGTAGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGT
130 GCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-
** * * *
19246580 TTCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCT
194 GGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
** *
19246645 ATCCCTCATCAAAATTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
19246710 GTCAGTAGCCATCAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACA
324 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
19246775 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGA-AAAAATACAAGGATCATGTCTACCAA
389 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAA
* ** * * **
19246839 GTTTGGGGACAAAAATCCTTTTGAAAAAATTTTAAAAAAT-CTCAAACCGTAAAAAGTTTTGAAA
453 GTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAA
* *
19246903 ATCGTGAAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATT
517 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
19246968 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATATCCCTAAACCCA
582 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCA
* ** * * *
19247033 CCTACCACCCTAACGATTGACAGCTTGCGCATCTCGTCTCTCTAGCCGGTGTAGTGCCCGCTCGC
647 CCTACCACCCTATCGATCCAC-GCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * *
19247098 CCGCTCATCCGCTCGTTTCGTCAGTTTGCTTAGGCATATGGAGTT-ATTCCCAGTCTAAGATCAG
711 CCGC-C-TCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * * *
19247162 ATTAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCATGCAGAGGGGGACCCGGCCGATCCCTGGC
774 ACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGC
* * * * *
19247227 TTGTGCATCCCACCTCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTTG
839 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
19247289 GCATACGGAGTTCATTCCCAGTCTAAGTATACGGAGTTAATTCCCAGTATAAGATCGGA-CAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GA
* * *
19247353 CCGAGGGTTGCAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
65 CCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * *
19247418 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGTATTGGGGTTCCAACGATCGGGGGG
130 GCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * *
19247483 GCTGGGGGGTGTGCGAACATGACGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
195 GCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
19247548 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTT
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
19247613 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
325 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* ** *
19247678 TTTGAGTTTTTAGCTGAATTCCTTTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGT
390 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
19247743 TTGGGGTCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATA
455 TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
* * * *
19247808 ATGGAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGA
520 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * *
19247873 TGAATTTAAAAGTCATAAAAATGGCATTGACACACAAAAATATGAAGATGTGCCTAAACCTACCA
585 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
* *
19247938 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCG
650 ACCACCCTATCGATCCAC-GCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
19248003 --TCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCTCAGTCTAAGATCAGATCAG
714 CCTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * *
19248066 ACTGAGGGTTGCAGCAGTAGGATCAGCAGCACCCAAAGGGGGACCTGGCCGATCCCCGGCTTGCG
779 ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCG
* * * * * *
19248131 CATCCTGCCCCTCTGGCCTGCTGAGTGCCTGCACGCTCGTTTCGTGGCTTGACTTTG
844 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * *
19248188 GCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * *
19248253 CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCATTGGGG
66 CGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** * * *
19248318 CACCATCGTCGAAGCATCGCCAAAGAACCTGACCGACAGCATTGGGGTTTCGGCGATC-GGGGGG
131 CACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * * *
19248382 CTGGGGGTTGTGCGCAAATGATGTGCAAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
196 CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
19248447 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
261 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
19248512 CAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTGACAAAATCTTGTACACT
326 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
19248577 TCGAGTTTTTAGCTGAATATTTTTT-TGCATGCCAACAAAAATAAAAGGATCACGACTACCAAGC
391 TCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * **
19248641 TTGGGGCCACAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATC
455 TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
* * * *
19248706 GTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTGCAGGTGAAGGCTTAAGGGACCATTGTA
520 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
19248771 TGAATTTACAGGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTCCCTAAACCCACCT
585 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
* * * *
19248836 ACCACCCTATCGATCCATAGCTTGCGCATCTCGTGTCTCTAGCCGACGTAGTGCCCGCCCGCCCG
650 ACCACCCTATCGATCCA-CGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * * **
19248901 --TCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGATAATTCCCAATCTAAGATCGGACTGG
714 CCTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * * *
19248964 ATCAAAGGTTGCGGTAGCAGGATCGGCAGCACCCAGAGGGGAACCCGACCGAT-CCTCGGCTTGC
779 ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCT-GGCTTGC
* * * ** *
19249028 GCATCCCGCCCCTCTGGCCGGCTGTGCGCCCGCACACTCGTTTTGTTAGTTGACTGAG
843 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
19249086 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* ** * * **
19249151 CGAGGATTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGGCATTTTTCTTCACCGGGG
66 CGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *
19249216 CACCATCGTCGAAGCATCGTCGGAGAACCTGACCGACGGCATTGGGATTCCGACGATCGGGGGGG
131 CACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
*
19249281 CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTAT
196 CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
19249346 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGC
261 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
19249411 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACT
326 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
19249476 TCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTT
391 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
19249541 TTGGGCCAAAAATCATTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCA
456 TGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCG
* *
19249606 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTAG
521 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * ** * *
19249671 GAATTTACAAGCCATTAAAATGGCATTGACATGCAAAAATATGAAGATATGGCTAAACCCACCTA
586 GAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTA
* * *
19249736 CCACCCTATCGATCCACGACTTGCACATCCTC-TCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCG
651 CCACCCTATCGATCCACG-CTTGCGCAT-CTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* *
19249800 CCCGCTCGCTCGTTTCATCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
714 -CCTC-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** * * **
19249865 ATACCGAGGGCTATG-GG-AGTAGGCTCGATAGCACGTAGAGTGGGACCCGATCGAT-CCTCGGC
777 AGACCGAGGG-T-TGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCT-GGC
* *
19249927 TTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAG
839 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
19249989 GCATACGGAGTTCATTCCCAGT-T-----TA---AG---A-T--C-G-----G--C---CCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * *
19250028 CGAGGGTTGCAGCAGCACATGCCGGGCTCAGGCATGTGCTGGGGCTGCATTTTTCATC-TCCAGG
66 CGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGG
* * * * ** *
19250092 GCACCATCATCAAAGCATCACCGGAGAACCTGACCGGCGGTGTT-GGGTTCCGGCGATCGGGGGG
130 GCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGG
*
19250156 TCGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCT
194 --GGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
19250220 CTAT-CCTCATCACACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAAGTTTG
257 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
19250284 CTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
322 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
19250349 CACTTCGATTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
387 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * ** *
19250414 AGTTTGGGGCCAAAAATTCTTCCGAAAAAATTTTAAAACATCCTGAACCATAAAAAGTTTTAAAA
452 AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
* *
19250479 ATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATT
517 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * ** * *
19250544 GTATGAATTTACAACCCATAAAAATGGCATTGCCATGCAGAAGTATGAAGATGTGCCTAAACCCA
582 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCA
* * * * ** * * *
19250609 CCAACCACCCTATCGATCCACGGCTTGCGTATCGCGTCTCTTTGGCCGGTATAGTGCTCGCTCAC
647 CCTACCACCCTATCGATCCAC-GCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * **
19250674 CTGCCTACC-CATTCGTTTTATCGGTTGGCTTAGGCACACGGAGTTCATTACCAGTCTAAGATTG
711 CCGCCT-CCGC--TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* *
19250738 GACCAGACCGATGGTTGCTGCAG
773 GACCAGACCGAGGGTTGCGGCAG
19250761 CACATGCTGG
Statistics
Matches: 3846, Mismatches: 489, Indels: 105
0.87 0.11 0.02
Matches are distributed among these distances:
875 3 0.00
876 19 0.00
877 569 0.15
878 62 0.02
879 3 0.00
880 1 0.00
882 1 0.00
887 1 0.00
888 1 0.00
890 1 0.00
891 1 0.00
894 2 0.00
897 4 0.00
898 833 0.22
899 760 0.20
900 4 0.00
901 2 0.00
902 639 0.17
903 535 0.14
904 399 0.10
905 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
TCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCA
TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:19249122 original size:26 final size:26
Alignment explanation
Indices: 19249086--19249138 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19249076 GTTGACTGAG
19249086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19249112 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19249138 G
1 G
19249139 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19251410 original size:710 final size:707
Alignment explanation
Indices: 19249978--19252181 Score: 2764
Period size: 710 Copynumber: 3.1 Consensus size: 707
19249968 TTGTTTCGTG
* *
19249978 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGCCCAGACCGAGGGTTGCAGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAG
* * * * *
19250043 CACATGCCGGGCTC-AGGCATGTGCTGGGGCTGCATTTTTCATC-TCCAGGGCACCATCATCAAA
66 CACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCAT-CGGGGCACCATC-TCAAA
** ** * *
19250106 GCATCACCGGAGAACCTGACCGGCGGTGTT-GGGTTCCGGCGATCGGGGGGTCGGCGGGGGGTGT
128 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCG-GGGGGGTGT
* *
19250170 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCTCATCACAC
191 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC-CATCAAAC
* *
19250235 CTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCCATTA
255 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
19250300 AAGTCTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAG
320 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
19250365 TTGA-ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
385 CTGATTTTTTTTTGTGCCTGCC---AAAAATAC----ATCACGTCTACCAAGTTTGGGGCC-AAA
* * **
19250429 ATTCTTCCGAAAAAATTTTAAAACATCCTGAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGA
442 ACTCTTCCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGA
* *
19250494 AAATGAGTCGTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAC
507 AAACGAGTCGTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
19250559 CCATAAAAATGGCA-TTGCCATGCAGAAGTATGAAGATGTGCCTAAACCCACCAACCACCCTATC
572 CCATAAAAATGGCATTTG-CATGCAGAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * ** * * ** *
19250623 GATCCACGGCTTGCGTATCGCGTCTCTTTGGCCGGTATAGTGCTCGCTCA-CCTGCCTACCCATT
635 GATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGC-CAGCCCGCCCGCCCACT
19250687 CGTTTTATC
699 CGTTTTATC
* * * * * *
19250696 GGTTGGCTTAGGCACACGGAGTTCATTACCAGTCTAAGATTGGACCAGACCGATGGTTGCTGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAG
* *
19250761 CACATGCTGGGCTCGAGCATGTTCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAAGC
66 CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-TCAAAGC
*
19250826 ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCG
130 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCG
* * * *
19250891 CACATGATGTGTGATGGGTGCTAGTACTTGGCTCTTATATTGGCCCCCTGTCCCAAATCAAACCT
194 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC--ATCAAACCT
* * * *
19250956 CGAGAACTCACACCCCTTTAAGGAGCATTTGAGATGTTACAGGTTTGCTGCCAATAGCCATTAAA
257 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
19251021 GTGTCTGAAATGGGGACACTTTTTTGAAATGGTCGCAAAATCTTGTACACTTCAAGTTTTTAGCT
322 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
19251086 GATTTTTTTTTGTGCCTGCC-AAAA-AC-TCACGTCTACCAAGTTTGGGGCCAAAACTCCGTCCA
387 GATTTTTTTTTGTGCCTGCCAAAAATACATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTCCG
* *
19251148 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
19251213 GTCTTGCCATGCAACTTCATGAGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19251278 TGGCATTTGCATGCAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCC-TGG
581 TGGCATTTGCATGCAGA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CCACGG
* * ** * *
19251342 CTTGCGCATCCCGTCTTTTTGGCTGGCGTAGTGCCCGCCAGCCCGCCCGCCGGCTCTTTTTGTC
644 CTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCCACTCGTTTTATC
* * ** * ** * *
19251406 GGTTGCCATAGGCATACGGAGTTTGTTCCCAGTCTAAGATCGAAGTAGATCGAGGGTTGCGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAG
* * * * * * *
19251471 CACATACTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCACCAGAGC
66 CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-TCAAAGC
* * * *
19251536 ATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTCCGACAATCGGAGGGGTCGGGGGGGTGTGCG
130 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCG
*
19251601 CACATGATGGGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
194 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CC-CATCAAACCT
*
19251666 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAA
257 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
19251731 GTGTATGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCT
322 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * ** **
19251796 GAATTTTTTTGTGCATGCC-ACCAAAAATACAAGGATCACGTCCGCCAAGTTTGGATTCCAAAAC
387 G-ATTTTTTTTTG--TGCCTGCCAAAAATAC----ATCACGTCTACCAAGTTTGG-GGCCAAAAC
* * * * * *
19251860 TCTTCCTGAAAAAATTTTAAAAAATCTCAAACTACAAAAAGTTTCAAAAATCATGAAAATTAGAA
444 TCTTCC-GAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAA
* * * *
19251925 AGCGTGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
508 AACGAGTCGTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
19251990 CATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
573 CATAAAAATGGCATTTGCATGCAG-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * *
19252055 TCCACGACTTGTGCATCCCATCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCACCCGCTCAT
637 TCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCCACTCGT
* *
19252116 TTCACC
702 TTTATC
* * * * * * *
19252122 GGTTGGCTTACGCATACGAAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGC
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
19252182 CATAGCAAGA
Statistics
Matches: 1287, Mismatches: 170, Indels: 60
0.85 0.11 0.04
Matches are distributed among these distances:
709 8 0.01
710 585 0.45
711 18 0.01
712 3 0.00
713 8 0.01
714 2 0.00
715 2 0.00
716 69 0.05
717 3 0.00
718 194 0.15
719 169 0.13
720 225 0.17
721 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (707 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAG
CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCTCAAAGCA
TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCATCAAACCTCGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT
TTTTTTTGTGCCTGCCAAAAATACATCACGTCTACCAAGTTTGGGGCCAAAACTCTTCCGAAAAA
ATTTTAAAAAATCCCAAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTTGCATGCAGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCCACTCGTTTTATC
Found at i:19253169 original size:900 final size:898
Alignment explanation
Indices: 19251417--19253214 Score: 2559
Period size: 900 Copynumber: 2.0 Consensus size: 898
19251407 GTTGCCATAG
* ** ** * *
19251417 GCATACGGAGTTTGTTCCCAGTCTAAGATCGAAGTAGATCGAGGGTTGCGGCAGCACATACTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATACTGGG
** * **
19251482 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCACCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGACACCATCACCAGAGCATCACCGGAGA
* *
19251547 ACCTAACCGGTGGCATTGGGGTTCCGACAATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGGG
131 ACCTAACCGGTAGCATTGGGGTTCCGACAATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGGG
19251612 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19251677 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTATGAAGT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAAT
* *
19251742 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * * *
19251807 TGCATGCCACCAAAAATACAAGGATCACGTCCGCCAAGTTTGGATTCCAAAACTCTTCCTGAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACATCCACCAAGTTTGGAGTCAAAAACTCTTCCTAAAAA
* * * * * * *
19251872 AATTTTAAAAAATCTCAAACTACAAAAAGTTTCAAAAATCATGAAAATTAGAAAGCGTGTCGTCT
456 AATTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
* *
19251937 TGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
521 TGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
19252002 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGT
586 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
*
19252067 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCATTTCACCGGTTGGCTTA
651 GCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CCCGCTCATTTCACCGGTTGGCTTA
* * * * * *
19252132 CGCATACGAAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCCATAGCAAGATGGGC
713 CGCATACGAAGTTCATTCCTAGTCAAAGATCAGACCAGACCGAGGGTTGCAACAGCAAGATCGGC
* * * * *
19252197 AGCACGCAGAGTGGGACTCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
778 AGCACACAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCG
* * *
19252262 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAT-GGAGTTCATTCCCAGTCTAA
843 CCCGCACGCTCATTCCATGGGTTGACTTAGGCAT-TCAGAGTTCATTCCCAGTCTAA
* * * * *
19252318 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGGGGGTTATGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATACTGGG
** *
19252383 CTCGGGCATGTGCTGGT-TCCACATTTTTCTTCACCGGGACACCATCGTCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGT-CACATTTTTCTTCACCGGGACACCATCACCAGAGCATCACCGGAG
* * * * *
19252447 AACCTGACCGGTAGCATTGGTGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTAACCGGTAGCATTGGGGTTCCGACAATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGG
* *
19252511 GCGATGGGTGCTTGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19252576 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAA
* * *
19252641 TGGGGGCACTTTTTTCCAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTT
* * *
19252706 TTTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCAAAAAAC-CTTCC-AA
389 TGTGCATGCCAAAAAAAATACAAGGATCACATCCACCAAGTTTGGAGTC-AAAAACTCTTCCTAA
* *
19252769 AAAAATTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCG
453 AAAAATTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
* *
19252834 TCTTGCCATTAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAATT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19252899 GGCATTGGCACACAAAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCT
583 GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
* **** *
19252964 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCCGCTCATTTTGTTGGTTGGCTTT
648 TGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCTCATTTCACCGGTTGGCTTA
* * * *
19253028 GGCATAC-AGAGTTCATT-CTCAGTCAAAGATCGGACCAGATCGAGGGTTGCAACAGCAGGATCG
713 CGCATACGA-AGTTCATTCCT-AGTCAAAGATCAGACCAGACCGAGGGTTGCAACAGCAAGATCG
* **
19253091 GCAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGTGCATCCCACCCCTCTGGCCGACTGAG
776 GCAGCACACAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCACCCCTCTGGCCGACTGA-
* *
19253156 TGCCCGCCCGCACGTTCGTTCCATGGGTTGACTTAGGCATTCAGAGTTCATTCCCAGTC
840 -G--CGCCCGCACGCTCATTCCATGGGTTGACTTAGGCATTCAGAGTTCATTCCCAGTC
19253215 GAAGATCGGA
Statistics
Matches: 791, Mismatches: 96, Indels: 21
0.87 0.11 0.02
Matches are distributed among these distances:
895 3 0.00
896 124 0.16
898 1 0.00
899 1 0.00
900 468 0.59
901 189 0.24
902 5 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATACTGGG
CTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGACACCATCACCAGAGCATCACCGGAGA
ACCTAACCGGTAGCATTGGGGTTCCGACAATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGGG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACATCCACCAAGTTTGGAGTCAAAAACTCTTCCTAAAAA
AATTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
GCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCTCATTTCACCGGTTGGCTTACGC
ATACGAAGTTCATTCCTAGTCAAAGATCAGACCAGACCGAGGGTTGCAACAGCAAGATCGGCAGC
ACACAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCCC
GCACGCTCATTCCATGGGTTGACTTAGGCATTCAGAGTTCATTCCCAGTCTAA
Found at i:19253222 original size:163 final size:163
Alignment explanation
Indices: 19252945--19253373 Score: 467
Period size: 163 Copynumber: 2.7 Consensus size: 163
19252935 CCCACCTACC
* * * *
19252945 ACCCTATCGATCCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGAC-GTAGTGCCCGCCCGCCCGC
1 ACCCGATCGATCC-CTGGCTTGCGCATCCCGCCCCTCTGGCCGACTG-AGTGCCCGCCCGCACGC
* * * * * * * *
19253008 TCATTTTGTTGGTTGGCTTTGGCATACAGAGTTCATTCTCAGTCAAAGATCGGACCAGATCGAGG
64 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCAAAGATCGGACCAAACCGAGG
* * * *
19253073 GTTGCAACAGCAGGATCGGCAGCACACAGAGGGGG
129 GTTACAACAGCAGGATCAGCAACACACAGAGGGAG
* * *
19253108 ACCCGATCGATCCCTGGCTTGTGCATCCCACCCCTCTGGCCGACTGAGTGCCCGCCCGCACGTTC
1 ACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCCGCCCGCACGCTC
* * * *
19253173 GTTCCATGGGTTGACTTAGGCATTCAGAGTTCATTCCCAGTCGAAGATCGGACCAAACCGAGGGT
66 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCAAAGATCGGACCAAACCGAGGGT
* ** **
19253238 TACGACAGTGGGATCAGCAACATGCAGAGGGAG
131 TACAACAGCAGGATCAGCAACACACAGAGGGAG
* * * * ** *
19253271 ACTCGATCGAT-CCTCGACTTGCGCATCCTGCCCCTCTTGCCGGTTGA--G--CGCCCGCATGCT
1 ACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCCGCCCGCACGCT
19253331 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
65 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
19253374 TAAGCATACA
Statistics
Matches: 222, Mismatches: 41, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
159 50 0.23
161 1 0.00
162 4 0.02
163 166 0.75
164 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.27, T:0.23
Consensus pattern (163 bp):
ACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCAAAGATCGGACCAAACCGAGGGT
TACAACAGCAGGATCAGCAACACACAGAGGGAG
Found at i:19253380 original size:26 final size:26
Alignment explanation
Indices: 19253351--19253428 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
19253341 GTTGACTTAG
19253351 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19253377 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
19253403 GTATACGGAGTTCATT-GCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19253428 G
1 G
19253429 ATCGAACCAG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 9 0.18
26 40 0.82
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19254486 original size:26 final size:25
Alignment explanation
Indices: 19254457--19254508 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19254447 GTTGACTTAG
19254457 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTC-TTCCCAGTCTAA
**
19254483 GCATACGGAGTTCTTTGCAGTCTAA
1 GCATACGGAGTTCTTCCCAGTCTAA
19254508 G
1 G
19254509 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCTTCCCAGTCTAA
Found at i:19255860 original size:715 final size:710
Alignment explanation
Indices: 19254483--19257375 Score: 3987
Period size: 703 Copynumber: 4.1 Consensus size: 710
19254473 CCCAGTCTAA
** ** * *
19254483 GCATACGGAGTTC-TTTGCAGTCTAAGATCGGACCAGACTTAGGGTTACGGTAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * *
19254547 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCATCAGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * * * **
19254612 ACTTGATCGACGACATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGGGTGCACATGATGTGCG
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-GTGCACACATGATGTGCG
*
19254677 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
19254742 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
19254807 GGACATTTTTTTCAATTGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATG
325 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA-TTTTTTTATG
* * * **
19254872 CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCAAAAAAACCTTCCAAAAAAAT
389 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
** **
19254937 TTAAAAAAAT-CTCGAATTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTAAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19255001 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * **
19255066 TGGCATGCAGAAATATGAAAATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTATGC
583 TGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
19255131 ATCCCGTCTCTCTGGCCGGCGTAGTGCTAGCCCGCTCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCCGCCC-TCCACTCGTTTCGTCGGTTGGCT
19255196 TAG
708 TAG
* * * * * *
19255199 GCATATGGAGTTCATTCCCTGTCTAAGATCGGATCAAACTGAGTGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * ** *
19255264 CTTC-GACATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCC-GGG
66 C-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAG
* * * *
19255327 AACCTGATCGGTGGTATTGGGGTTTCGATGATCGGGGGGCCGAGGGGGGTGCACACATGATGTGC
130 AACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGGTGCACACATGATGTGC
* * * *
19255392 GATGGGTACCGGTACTTGGCCCTTATATTAGCCCCTTATCCCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19255457 -CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19255521 GGGACACTTTTTTCAAATGGACACAAAATCTTGTACAATTTGAGTTTTTAGCTGATTTGTTTTAT
324 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTT-TTTTAT
* * * *
19255586 GCATGCCAAAAAAAATACAAGGTTCACGTCTACCAAGTTTAGGGCCCAAACTCCTTCCGAAAAAA
388 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * *
19255651 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
453 TTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
19255716 CCATGAAACTTCACGTGAAGGCTTAGGGGGCTATTGTATGAATTTAAAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19255781 TGGAAAGCAGAAATATGAAGATGTTCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
19255846 ATCCCGTCTCTCTGGTCGGAGTAGTGCCTGCCCG--CT-CA----TTTCGT-TGTTGGCTTAG
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCACTCGTTTCGTCGGTTGGCTTAG
* * *** * * * * *
19255901 GCTTACGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTGTGGTAGTAGATGTTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * *
19255966 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGGGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * ** *
19256031 ACCTGGTCGGCGGCATTGGCGTTCCGGTGATCGGGGGGGCCGGGGGGGTGCGCACATGATGTGCG
131 ACCTGATCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGCACACATGATGTGCG
*
19256096 ATGGGTGCCGGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
195 ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
19256160 CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19256225 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGTTGATTATTTTTGT
325 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGATT-TTTTTAT
* * *
19256289 GCTTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTACAAAAAAA
388 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* ** * *
19256354 TTTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
453 TTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
19256419 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19256484 TGGCATGCAGAAATATGAAGAT-TTACCTAAATCCACCTACCACCCTATCGATCCACAGCTTGCG
583 TGGCATGCAGAAATATGAAGATGTT-CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
19256548 GATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCATTCGTTTCGTCGGTTGGCTTAG
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-TCCACTCGTTTCGTCGGTTGGCTTAG
*
19256613 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * * * * * *
19256678 TTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGACATCATTGCCGGATCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* *
19256743 ACCTGA-CTGGCGGAATTGGGGTTTCGACGATCGGGGGAGCC-GGGGGGTGCGA-ACATGATGTG
131 ACCTGATC-GGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGC-ACACATGATGTG
* *
19256805 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19256870 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19256935 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTT
323 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT-GATTTTTTTA
* * * *
19257000 TGCGTGCCAACAAAAATACAAGGATCATGTCTACC-AGTTTTGGGGCCAAAACTCCTT-CTAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
19257063 AATTT-TAAAAATCCTGAACCACAAAAGGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCT
451 AATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
19257127 TGCCTTGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGA
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19257192 ATTGGCACGCAGAAATAGGAAGATGTGCCTAAACCCACCTACTACCATATCGATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* **
19257257 GCATCCCGTCTCTTTGGTTGGCAG-AGTGCCCGCCCGCCCGCCCTCTCACTCGTTTCGTCGGTTG
646 GCATCCCGTCTCTCTGGCCGGC-GTAGT----GCCCGCCCGCCCTC-CACTCGTTTCGTCGGTTG
19257321 GCTTAG
705 GCTTAG
*
19257327 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
19257376 TGAGCAGGAT
Statistics
Matches: 1928, Mismatches: 215, Indels: 70
0.87 0.10 0.03
Matches are distributed among these distances:
701 2 0.00
702 113 0.06
703 502 0.26
704 11 0.01
705 1 0.00
707 3 0.00
708 1 0.00
709 1 0.00
710 189 0.10
711 116 0.06
712 310 0.16
713 5 0.00
714 85 0.04
715 366 0.19
716 124 0.06
717 97 0.05
718 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (710 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGA
ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGCACACATGATGTGCGA
TGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTATGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
AAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCACTCGTTTCGTCGGTTGGCTTAG
Found at i:19257514 original size:26 final size:26
Alignment explanation
Indices: 19257485--19257537 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19257475 GTTGACTTAG
19257485 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19257511 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19257537 G
1 G
19257538 AACGAATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19258303 original size:478 final size:476
Alignment explanation
Indices: 19257398--19258349 Score: 1429
Period size: 478 Copynumber: 2.0 Consensus size: 476
19257388 GGAGCACGCA
* * *
19257398 AAAGGGGACCCGACCGATCTCCGACTTGCTCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGTACG
1 AAAGGGGACCCGACCGATCCCCGACTTCCTCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACG
* * *
19257463 CTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
66 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCACTC
* * *
19257528 CCAGTCTAAGAACGAATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
131 CCAGTCTAAGAACGAACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGT
** * *** * *
19257593 GCTGCATTTTTCTTCGTTGGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
196 GCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATT
** * *
19257658 GGGGCTCAGGTGATCGAGGGGGTCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTAGCACT
261 GGGGCTCAGACGATCGAGGGGGCCGGGGAGGTGTGCGCACATGATGAGCGATGGGTGCTAGCACT
* * *
19257723 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTTAAGAACTCACACCCCCTTAAAGAGCAT
326 TGGCCCTTAGACTGGCCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCAT
* * *
19257788 TTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
391 TTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC-TTTTTCAA
19257853 ATGGTCACAAAATCTTGTACGT
455 ATGGTCACAAAATCTTGTACGT
* * *
19257875 AAAGAGGGACCCGATCGATCCCCGACTTCCTCATCTCGCCCCTCTGGCC-GACTGAGTGCCCGCA
1 AAAG-GGGACCCGACCGATCCCCGACTTCCTCATCCCGCCCCTCTGGCCAG-CTGAGCGCCCGCA
* *
19257939 CGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTTATTCCCAGTCTAAGCATACGAAGTTCAC
64 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAC
* * * *
19258004 TCTCAGTCTAAGATCGAACCGGACTGAGGGTTGTGACAGCACATGCTGGGCTCAGGCATGTGCTG
129 TCCCAGTCTAAGAACGAACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTG
19258069 GTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCA
194 GTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCA
* * * * * *
19258134 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGAGCGATGGGTGCTGGTA
259 TTGGGGCTCAGACGATCGAGGGGGCCGGGGAGGTGTGCGCACATGATGAGCGATGGGTGCTAGCA
* * * *
19258199 CTTGGCCCTTAGACTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTATAGAGC
324 CTTGGCCCTTAGACTGGCCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGC
* *
19258264 ATTTGAGATTTTAGAGGTTTGATTCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTCA
389 ATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTCA
*
19258329 AGTGGTCACAAAATCTTGTAC
454 AATGGTCACAAAATCTTGTAC
19258350 ACTTTGAGTT
Statistics
Matches: 424, Mismatches: 49, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
477 32 0.08
478 392 0.92
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (476 bp):
AAAGGGGACCCGACCGATCCCCGACTTCCTCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCACTC
CCAGTCTAAGAACGAACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGT
GCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATT
GGGGCTCAGACGATCGAGGGGGCCGGGGAGGTGTGCGCACATGATGAGCGATGGGTGCTAGCACT
TGGCCCTTAGACTGGCCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTCAAA
TGGTCACAAAATCTTGTACGT
Found at i:19261860 original size:26 final size:26
Alignment explanation
Indices: 19261831--19261883 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19261821 GTTGACTTAG
* *
19261831 GCATATGGAGCTCATTCCCATTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
19261857 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19261883 G
1 G
19261884 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19263665 original size:26 final size:26
Alignment explanation
Indices: 19263629--19263678 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19263619 GACTTAGGCG
19263629 TACGGAGTTCATTCCCAATCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
* *
19263655 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
19263679 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:19265005 original size:731 final size:719
Alignment explanation
Indices: 19263552--19265032 Score: 2062
Period size: 731 Copynumber: 2.0 Consensus size: 719
19263542 GGGGACTCGG
* * * * * ***
19263552 TCGATCCCCGGCTTGCGCATCCCGTCCCGCTGGTCGGCTGAGCGCCCACATGTTCGTTTCGTGGG
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCTGAGCACCCACACACTCGTTTCGTGGG
* * * **
19263617 TTGACTTAGGCGTACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTCCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGAATAAGATC
* * *
19263682 AGACCGGATCGAGGGTTGCGGCAGCACATGCAAGGCCCGAGCATGTGCTGGTGTCGCATTTTTCT
131 AGACCGAATCGAGGGTTGCGACAGCACATGCAAGGCCCGAGCATGTGCTGGTGCCGCATTTTTCT
* * **
19263747 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGATTCGGTGATCGTGGGGGCCAGG
196 TCGTCGGACCATCGTCGGACAACCTGACCGACGGCATTGGGGATTCGACGATCGTGGGGGCCAGG
** * * *
19263812 GGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCC
261 GGGGGTGTGCGCAAATGATGTGCGATGGGTGCCGATACTTGGCCCGTATATTAGCCCCCTATCCC
* *
19263877 TCATCAAACCTCAAGAACTCCCACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAG
326 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
* * **
19263942 TAGCCGTTAAAGTGTCTGAAATGGGGACAATTTTTTTTAAATGGTCACAAAATCTTGTACACTTC
391 TAGCCATTAAAGTGTCTGAAATGGGGACAACTTTTTCCAAATGGTCACAAAATCTTGTACACTTC
*
19264007 GAGTTTTTAGCTGAATATTTTTGTGCATGGCAAAAAAAATACAAGGATCATGTCTACCAAGTTTG
456 GAGTTTTTAGCTGAATATTTTTGTACATGGCAAAAAAAATACAAGGATCATGTCTACCAAGTTTG
* ** *
19264072 GGGCCAAAACTCCTTCGGAAAAAATTTTAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAA
521 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAATCCTGAACCCCAAAAAGTTTCAAAAATCATGAA
* *
19264137 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
586 AAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAAT
* **
19264202 TTACAAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTGCCAC
651 TTACAAGCCATAAAAATGGCATTGGCATGCACAAATACGAAGATGTGCCTAAACCCACCAACCAC
19264267 CCTA
716 CCTA
* * *
19264271 TCGATCCACGGCTTGCGCA-CCCATCTCTCTGGCCGGCTGAGCACCCGCACACTCGTTTTGTGGG
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCTGAGCACCCACACACTCGTTTCGTGGG
* * *
19264335 TTGACTTAGGCATACGGAGTCCATTCCGAGTCTAAGCATACGGAGTTCATTCCCAGAATTAGATC
66 TTGACTTAGGCATACGGAGTCCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGAATAAGATC
* * * ** * *
19264400 GGACCGAATCGAGGGTTGTGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
131 AGACCGAATCGAGGGTTGCGACAGCACATGCAAGGCCCGAGCATGTGCTGGTGCCGCATTTTTCT
* * *
19264465 TTGTCGGGGCACCATCACCGCAGCATCACCGGACAACCTGACCGGCGGCGTTGGGG-TTCTGACG
196 TCGTC--GG-ACCAT-----C-G--T---CGGACAACCTGACCGACGGCATTGGGGATTC-GACG
* *
19264529 ATCG-GGGGGGC-TGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCCGATACTTGGCCCGTATA
246 ATCGTGGGGGCCAGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCCGATACTTGGCCCGTATA
* * *
19264592 TTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
311 TTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
19264657 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC-ACTTTTTCCAAATGGTCACAA
376 CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAACTTTTTCCAAATGGTCACAA
* * * *
19264721 AATCTTGTGCCCTTCGAGTTTTTGGCTGAA-ATTTTTTGTACAT-GCTAACAAAAATACAAGGAT
441 AATCTTGTACACTTCGAGTTTTTAGCTGAATA-TTTTTGTACATGGC-AAAAAAAATACAAGGAT
19264784 CATGTCTACCAAGTTTGGGGCCAAAA-TGCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCCCA
504 CATGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTT--AAAATCCT-GAACCCCA
**
19264847 AAAAGTTTTGAAAATCATGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGCC
565 AAAAGTTTCAAAAATCATGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGCC
*
19264912 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATACGAAGAT
630 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCACAAATACGAAGAT
*
19264977 GTGCCTAAACCCATCAACCACCCTA
695 GTGCCTAAACCCACCAACCACCCTA
19265002 TCGATCCACGGCTTGCGCATCCCGTCTCTCT
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCT
19265033 AGCCAGCGTA
Statistics
Matches: 667, Mismatches: 73, Indels: 31
0.87 0.09 0.04
Matches are distributed among these distances:
718 151 0.23
719 18 0.03
720 2 0.00
721 4 0.01
726 1 0.00
727 1 0.00
728 4 0.01
729 114 0.17
730 148 0.22
731 184 0.28
732 40 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (719 bp):
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCTGAGCACCCACACACTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTCCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGAATAAGATC
AGACCGAATCGAGGGTTGCGACAGCACATGCAAGGCCCGAGCATGTGCTGGTGCCGCATTTTTCT
TCGTCGGACCATCGTCGGACAACCTGACCGACGGCATTGGGGATTCGACGATCGTGGGGGCCAGG
GGGGGTGTGCGCAAATGATGTGCGATGGGTGCCGATACTTGGCCCGTATATTAGCCCCCTATCCC
TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
TAGCCATTAAAGTGTCTGAAATGGGGACAACTTTTTCCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATATTTTTGTACATGGCAAAAAAAATACAAGGATCATGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCGAAAAAATTTTAAAATCCTGAACCCCAAAAAGTTTCAAAAATCATGAA
AAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCACAAATACGAAGATGTGCCTAAACCCACCAACCAC
CCTA
Found at i:19267150 original size:26 final size:26
Alignment explanation
Indices: 19267121--19267171 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19267111 TTGACTTAGG
19267121 ATACAGAGATCATTCCCAGTCTAAGC
1 ATACAGAGATCATTCCCAGTCTAAGC
* *
19267147 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGATCATTCCCAGTCTAAG
19267172 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGATCATTCCCAGTCTAAGC
Found at i:19268058 original size:26 final size:26
Alignment explanation
Indices: 19268020--19268072 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19268010 GTTGACTTAG
*
19268020 GCATACGGGGTTCA-TTCCTAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
19268046 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
19268072 G
1 G
19268073 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:19270707 original size:26 final size:26
Alignment explanation
Indices: 19270677--19270726 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19270667 TTTGACTTAG
19270677 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTCA
*
19270703 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
19270727 AAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTCA
Found at i:19272300 original size:878 final size:879
Alignment explanation
Indices: 19268815--19275258 Score: 7255
Period size: 878 Copynumber: 7.2 Consensus size: 879
19268805 CCCGCACGCT
* * * * * *
19268815 CATCCCGCCCCTCTAGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGG
1 CATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * ** * *
19268880 AGTTCATTCCCAGACTAAGCTTATAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* *
19268945 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCTGGGGCACCATCA
131 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA-C--CA
* * ** *
19269010 TCAGAGCATCGTCGGAGAACCAGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
193 T----G--T-GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGG
19269075 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
250 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * * *
19269140 AAACCTTGAGAACTCACA-TCTCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCA
315 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
19269204 ATTAAAATGTCTGAAATGGAGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTT
380 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
19269268 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAACACAAGGATCACGTCTACCAAG-TTGTGGCCA
445 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
19269332 AAACTCCTTCCGAAAGAATTTTAAAAAAT-CTCAAACCGCAAAAGGTGTCAAAAATCGTGAAAAA
510 AAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGAAAAAAGTTTCAAAAATCATGAAAAA
* ** * * *
19269396 TAGAAAAGGAGTTATCTTGCCATGAAACTTCACGCGAAAGCTTAAGGGACCATTGTATGAATTTA
574 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTA
* * * *
19269461 CAAGCCATAAAAATGGCATTAGCATGAAGAAATTTGTAGATGTGCCTAAACCCACCTACCACCCT
639 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * *
19269526 ATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAAT-ACC-CTC-CCGTCCGCCCGT
704 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCGCCCGCCCGC
* * * *
19269588 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCGAAGATCGGACCAGACCGAAG
769 TCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACCGAA-
* * * *
19269653 GTTGTGGTAGCAGGAACAGCAGCACGTAGAGGGGGACCCGGA-TGATGCCTGGCTTGCG
833 G--GT--T-GC--G----GCAGCACGTAGAGGGGGACCC-GACCGATCCCCGACTTGCG
* * * *
19269711 CATCCCACCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTTGTGGGTTGACTTTGGCATACGG
1 CATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * ** * * *
19269776 AGTTCACTCCCAGTCTAAGCATACAGAGTTCATTCCTTGTCTAAGATCGGA-CTGAACTGAGGGC
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGT
* *
19269840 TGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTC-TCGGGGCACCAT
130 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGCCGGGGCACCA-
* *
19269904 CGTCGGAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGG
193 --T----G--T-GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGG
* *
19269969 GGTGTGCGCACATGATGTGCGATGGGTACTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCA
248 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
19270034 TCAAACCTTGAGAACTCACACCCCCTTAAAGTGTATTTGAGATATTACAGGTTTGCTGCCAGTAG
313 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
19270099 CCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTTGTGT
378 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
19270164 TTTTAGCTGAATTTTTTTGTGCATACCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGAC
443 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** *
19270228 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACC-ATAAAAAGTTTTGAAAATCGTGAAA
508 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGA-AAAAAGTTTCAAAAATCATGAAA
* *
19270292 AATA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATT
572 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATT
***
19270356 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
637 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
19270421 TTATCGATCCACTGCTTACGCATCTCGTCTCTCTGGCCGACGTAATGCCCGCCCGCCCTCTTGGC
702 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-A-G--TGCCCG--CTC---GC
* * * *
19270486 CGCCCGCCCGCTCGTGTCGTCGGTAGGCTT-AGACATACAGAGTTCATTCCCAGTCTAAGATTGG
758 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAAG-CATACGGAGTTCATTCCCAGTCTAAGATCGG
** * * * *
19270550 ACCGGACTGAGGGCTGCAGTAGCCGCATCGACAGCACGTAGAGGGGGACCC-AGCCGATCCTCGG
822 ACAAGACCGAAGG-T----T-G-CG----G-CAGCACGTAGAGGGGGACCCGA-CCGATCCCCGA
*
19270614 CTTACG
874 CTTGCG
** * * * * *
19270620 CATCCGGCCCCTCTGGCTGGCTAAACGCCCGTACGCTCGTTTCATGGTTTGACTTAGGCATACGG
1 CATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
19270685 AGTTCATTCCCAGTCTCAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* ** * *
19270750 GCGGCAGCACATGCTAGGCTCAAGCATGTGCTAGTGCCGCATTTTTCTTCGCCAGGGCACCATCG
131 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA---
** * * * * *
19270815 CTGGAGCATCGCCGGAGAATTTAATCGATGGCATTGGGGTTCCGACGATCGGGGGGCCGGGCGGT
193 -T---G--T-GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGT
* *
19270880 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATGTTGGCCCCCTATCCCTCATCA
251 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*** *
19270945 AACCTCGAGAACTCACATATCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCA
316 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
19271010 TTAAAGTGTCTGAAATGGGGAGACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
381 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * **
19271075 TAGCTGAATTTTTTTATGCATGCCAACAAATATACAAGGATCACACCTACCAAGTTTGGGG----
446 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
*
19271136 -------T-CGAAAAAGTTTTAAAAAAT-CTCGAACCG-AAAAAGTTTCAAAAATCATGAAAAAT
511 AACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGAAAAAAGTTTCAAAAATCATGAAAAAT
*
19271191 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTAC
575 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTAC
*
19271256 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
640 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * **
19271321 TCGATCCATGGCTTGCGCATCCCGTCTTTCTGGCTGACGTAGTGCCCGCTCGCC-CATCCGCTTG
705 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCGC--CCGCCCG
*
19271385 CTCGTTTCGTCGGTTGGCTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACAAGACCGAA
768 CTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACCGAA
* * *
19271450 GGTTGCGGCAGCACGTAGAGGGGGACCCGACGGATCCCCGACGTGCA
833 GGTTGCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCG
* * * * * * *
19271497 CATCCCGCCCCGT-TGGCTGGCTGAGTGCCCGTACACTCGTTTTGTGGGTTGACTTAGGCTTATG
1 CATCCCACCCC-TCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
19271561 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCCA-TCTACGATCGGACCAAACCGAGGG
65 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCAGACCGAGGG
* * * * * **
19271625 TTGCGACCGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTAACCGGGGCACCAT
129 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
**
19271690 -TGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTAATCGGGGGGCCGGGGGGTGTGCGCAC
194 GTGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCAC
* *
19271754 ATGATGTGCAATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
259 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
19271819 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG
324 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
19271884 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
389 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * ** *
19271949 TTTTTTTGTACATGCCAAGAAAAATACAATGATCATGTCTATGAAGTTTGGGGCCAAAACTCATT
454 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
19272014 CCGAAAAAGTTTTAAAAAATCCTAAACC-AAAAAAGTTTCAAAAATCATGTAAAATACAAAACGG
519 CCGAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
19272078 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGGCATAA
584 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAA
19272143 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
649 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
19272208 GGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCTCGCCGGCCCGCTCGCTCGTTTCGT
714 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCC-GCCCGCCCGCTCGTTTCGT
* * *
19272273 CGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
778 CGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACCGAAGGTTGCGGCA
* * * *
19272338 GCACGTAGAGAGGGACCCGACGGATTCCCGACTTGCA
843 GCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCG
* * * * * ** * *
19272375 CATCCCATCGCTCTGGTTGGCTGACCGCCTGCACGCTTATTTCATGGGTTGACTTAGGTATACGG
1 CATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * * * *
19272440 AGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAACATCAGACCGGACCAAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * * ** *
19272505 ACGGCAGCACATGTTGGGCTC-GGCATGTGCTGGTGCTGCGTTTTTCTTCATCTGGGCACCATCG
131 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT--
* * * * *
19272569 CCAGAGCATCACCGGGGAACCTGACCGACGACATTGAGGTTCTGGCGATCGGGGGGCCGGGGGGG
194 -----G--T-GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGG
* *
19272634 TGTGCGCACAT-ATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCTCCTATCCCTCATC
250 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19272698 AAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCA
315 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
19272763 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC--G---
380 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
19272823 --A---G---TTTTTTGTGCATGCCAACAAAAATGCAAGGATCATGTCT----A--------CC-
445 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * * *
19272867 -AACTCCTTTCAAAAAAATTTTGAAAAATCCCGAACCGTAAAAAGTTTCAAATATCGTGAAAAAT
510 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAAAAATCATGAAAAAT
* *
19272931 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCAC
575 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTAC
*
19272996 AAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTA
640 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *** * *
19273060 TCGATCCATGGCTTGTTTATCCCGTCTCTCTGACCGACGTAGTGCCCG--C-CCGCCCG-CCTCT
705 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCGCCCGCCCGCT
*
19273121 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGG
770 CGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-----CGGA-C-A---
* * * * * * * *
19273186 TTGCACCAGCAGGAT-CGACAACACGTAGA-GAGGACCCGATCGATCCCCGACTTGTG
825 -AG-ACC-GAAGGTTGCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCG
* * * * * *
19273242 CAACCCACCCATCTGGCTGGCTGACCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGG
1 CATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* ** * ** *
19273307 AGTTCATTCCCAGTCTAAGCATTCGGAAGTTCATTCTAAGTCTAAGATCAGACTGGACTGAGGGT
66 AGTTCATTCCCAGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * *
19273372 TGCGGTAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCGCCATC
130 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CCGGG-G----C
* * * * * *
19273437 ACCAAAGCATCGCCGGAGAACCTGACTTG-CGGCAATAGGGTTCTGACGATCGGGGGGCCGGGGG
189 ACC-ATG--T-GCCGGAGAACCTGAC-CGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGG
*
19273501 GTGT--GCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
249 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
19273564 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGC
314 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
19273629 TATTAAATTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
379 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
19273694 TTTAGCTGAATGTTTTTGTGCATGCCAACAAAAAATACAAGGATCACGTCTACCAGGTTAGGGGC
444 TTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** **
19273759 C-AAACCCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAA-TTTTGAAAATCATGAAA
508 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCG-AAAAAAGTTTCAAAAATCATGAAA
* * * **
19273822 AATAGAAAATGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGTG-ACCATCGTCCGAAT
572 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GAACCATTGTATGAAT
19273886 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCTACCA
636 TTACAAGCCATAAAAATGGCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
19273951 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGTCCACCCG
700 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCG-CCGCCCG
* * *
19274016 CACGCTCGTTTCGTCGGTTGGCTTATGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGAT
764 CCCGCTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C--A-
* * * * * * **
19274081 GGAGGATTGCGGTAGCAGGAT-CGACAGCACGCAGAGGGGGACCTGACCGATCCCTGACTTATG
825 --A-GA---CCG-A--AGGTTGCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCG
* * * * *
19274144 CATCCCACCCCTCTGGCCGGTTGAGCACCCACACTCTCGTTTCGTGGGTTGACTTAGGCATACGG
1 CATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
19274209 AGTTCATTCCCAATATAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
** * * * * * *
19274274 AAGACAGCACATGCTAGGCACGAGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCG
131 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA---
* * *
19274339 TCGGTGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGCACCGAGGGG
193 T--GTG-----CCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG-GCC--GGGG
* * *
19274404 AGGTGTGCGCACATGATGTACGATGTGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTC
248 -GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
19274469 ATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTGATAGGTTTGCTGGCAGTA
312 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
19274534 GCCATTAAAGTGTCTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
377 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
19274599 TTTTTAGTTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGG
442 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
19274664 CTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAAT-ATTGAA
507 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAAAAATCA-TGAA
19274728 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAA-CATTGTATGAA
571 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGAACCATTGTATGAA
*
19274792 TTTACAAGGCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
635 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * **
19274857 TCCTATCGATCTACGGCCTGCGCATCCTGTCTCTCTGGCCGATGCAGTGCCCG--C-CCGCTTGC
700 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCGCCCGC
* * * * *
19274919 CCGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGATCAA-AC
765 CCGCTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAAGAC
* * *
19274983 C-AAGGCTTGCAGCATCAGGATCGACAGCACGTAAAGGGGGACCTGACCGATCCCCGACTTACG
829 CGAAGG-TT---G---C--G---G-CAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCG
* *** * ** * * *
19275046 CATACTGTCGCTCTGGCCAGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA
1 CATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
19275111 AGTTCGTTCCCAGTGTAAGCATACGCAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * * *
19275176 GCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTTGCTGGGGCACCATCG
131 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT-G
19275241 T--CGGAGAACCTGACCGAC
195 TGCCGGAGAACCTGACCGAC
19275259 TTGCCATGAA
Statistics
Matches: 4783, Mismatches: 585, Indels: 365
0.83 0.10 0.06
Matches are distributed among these distances:
856 51 0.01
857 5 0.00
858 2 0.00
859 1 0.00
861 89 0.02
862 131 0.03
863 2 0.00
866 286 0.06
867 270 0.06
868 73 0.02
869 72 0.02
870 3 0.00
871 2 0.00
873 1 0.00
874 1 0.00
875 39 0.01
876 1 0.00
877 229 0.05
878 461 0.10
879 2 0.00
880 18 0.00
881 20 0.00
882 2 0.00
883 1 0.00
884 1 0.00
886 1 0.00
887 2 0.00
888 216 0.05
889 78 0.02
890 3 0.00
891 19 0.00
892 1 0.00
893 9 0.00
894 133 0.03
895 36 0.01
896 381 0.08
897 430 0.09
898 130 0.03
899 5 0.00
900 12 0.00
901 178 0.04
902 362 0.08
904 5 0.00
905 8 0.00
906 117 0.02
907 339 0.07
908 225 0.05
909 327 0.07
910 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
CATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATGT
GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCGCCCGCCCGCTCGTTTCGTCGG
TTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACCGAAGGTTGCGGCAGCA
CGTAGAGGGGGACCCGACCGATCCCCGACTTGCG
Found at i:19272468 original size:26 final size:25
Alignment explanation
Indices: 19272434--19272490 Score: 89
Period size: 26 Copynumber: 2.3 Consensus size: 25
19272424 TGACTTAGGT
*
19272434 ATACGGAGTTCATTCCCAATCTAAGC
1 ATACAGAGTTCATTCCCAATCTAA-C
19272460 ATACAGAGTTCATTCCCAATCTAAC
1 ATACAGAGTTCATTCCCAATCTAAC
19272485 AT-CAGA
1 ATACAGA
19272491 CCGGACCAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.26
Consensus pattern (25 bp):
ATACAGAGTTCATTCCCAATCTAAC
Found at i:19273337 original size:27 final size:26
Alignment explanation
Indices: 19273299--19273352 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
19273289 GTTGACTTAG
*
19273299 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
19273325 GCATTCGGAAGTTCATTCTAAGTCTAA
1 GCATACGG-AGTTCATTCCAAGTCTAA
19273352 G
1 G
19273353 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:19275155 original size:26 final size:26
Alignment explanation
Indices: 19275103--19275155 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19275093 GTTGACTTAG
* * *
19275103 GCATACGAAGTTCGTTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
19275129 GCATACGCAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
19275155 G
1 G
19275156 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:19275651 original size:26 final size:26
Alignment explanation
Indices: 19275621--19275699 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
19275611 GTTGAGTTAG
19275621 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19275647 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19275673 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19275699 G
1 G
19275700 ATCGGACCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19276579 original size:26 final size:26
Alignment explanation
Indices: 19276549--19276601 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19276539 GTTGAGTTAG
19276549 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19276575 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19276601 G
1 G
19276602 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19277573 original size:185 final size:185
Alignment explanation
Indices: 19277242--19277667 Score: 546
Period size: 185 Copynumber: 2.3 Consensus size: 185
19277232 GTTAGCTTAG
* * * * *
19277242 GCATACGGAGTCCATTCCCAGTCTAAGGTTGGACAAGACCAAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCAAGATCGACA
* * * * *
19277307 GCATGCAGAGGGGGACCCGGCCTATCCCTGGCTTGCGCATCCCGCCCCTCGGGCCGACTGAGCGC
66 GCATGCAAAGGGGGACCCGGCCGATCCCTAGCTTGCGCATCCCACCCCTCGCGCCGACTGAGCGC
* * **
19277372 CCGTACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
19277427 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGGCAGCCAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCAAGATCGACA
* ** * **
19277492 GCATGTAAAGGGGGACCCGGCCGATCCCTAGCTTGCGCATCCCACCCCTTTCGTCGGTTGAGCGC
66 GCATGCAAAGGGGGACCCGGCCGATCCCTAGCTTGCGCATCCCACCCCTCGCGCCGACTGAGCGC
* * *
19277557 CCGCACGCTCGTTTCGTGGGTTGTCTTAGGCATACAGAGTTCATTGCCAGTCTAT
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** ** * * *
19277612 GCATGCGGAGTTCATTCTTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCA
19277668 CATGCTGGGC
Statistics
Matches: 204, Mismatches: 37, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
185 204 1.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCAAGATCGACA
GCATGCAAAGGGGGACCCGGCCGATCCCTAGCTTGCGCATCCCACCCCTCGCGCCGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:19278519 original size:26 final size:26
Alignment explanation
Indices: 19278490--19278542 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19278480 GTTCACTTAG
*
19278490 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
* *
19278516 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
19278542 G
1 G
19278543 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:19279179 original size:902 final size:903
Alignment explanation
Indices: 19277427--19284688 Score: 9374
Period size: 912 Copynumber: 8.1 Consensus size: 903
19277417 CCCAGTCTAA
* * * *
19277427 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGGCAGCCA-GATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG-CAGGATCGAC
* ** * * * * *
19277491 AGCATGTA-AAGGGGGACCCGGCCGATCCCTAGCTTGCGCATCCCACCCCTTTCGTCGGTTGAGC
65 AGCATGCAGAA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
19277555 GCCCGCACGCTCGTTTCGTGGGTTGTCTTAGGCATACAGAGTTCATTGCCAGTCTATGCATGCGG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
** * * *
19277620 AGTTCATTCTTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
194 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
* * ** *
19277685 TGTGCTGGTGCCGCATTTTTCTTCACCAAGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACC
259 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
*
19277750 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGT
324 GACGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGT
* *
19277814 GTTGGTACTTGGCCCTTATATTGGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCT
388 GCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
19277879 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
452 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
19277944 CCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTTGCATGC
517 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * * *
19278009 CAATAAAAATACAAGGATCACGTCTGCCAAATTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAG
582 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAA
* * * *
19278074 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAGATAGAAAATGAGTCGTCTTGCCATGA
647 AAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
19278139 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
712 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
19278204 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCG
777 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
19278269 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCAGTTGGCTTAG
842 TCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * *
19278331 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
** * * *
19278396 GCATGCAGAAGGGGACCCGATCGATCCCTGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGC
66 GCATGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
19278461 CTGCACGGTCGTTTCGTGGGTTCACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATATGAAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
* * * * * *
19278526 TTCATTCCCAGTCTAAGATCGGATCGGATCGAGTGTTGCGGCAGCACATGCTAGGCTCGATCGTG
196 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATG
* ** * * *
19278591 TGCTGGTGTCACATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATTG-CTGGAGAATCTGACCG
261 TGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCG
* *
19278655 ACGGCATTAGAGTTTCGACGATCAGGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTG
325 ACGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTG
* *
19278720 CTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCA-CAAACCTCAAGAACTCACACCCCCTTA
389 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
19278784 AAGAGCATTTGAGATTTTATAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
454 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
19278849 TTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTTGTGCATGCCA
519 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
19278913 ATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAAATTCAAAA
584 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAA
* *
19278978 AATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
649 AATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
**
19279043 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCATGC
714 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
19279108 AGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGCC
779 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
19279173 TCTCTGGCCGACATAGT--------GCCCACCCGTCCGCTCATTTCGTCGGTTGGCTTAG
844 TCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * * * * *
19279225 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGATGTGACAGTAGGATCGGA-
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATC-GAC
* * * * * *
19279289 AACACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCG
65 AGCATGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
19279354 CGCGCACGCTCATTTCTTGGGTTG----A--CATA---AG--CA-T---A--C---G-----G-A
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
* * * * * * * *
19279393 GTTCATTCCCAGTCTAAGATCGGATCGGATCGAGTGTTGTGGCAGCACATGCTAGGTTCGAACGT
195 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
* * ** * *
19279458 GTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGTCAAAGCATTG-CTGGAGAACCTGACT
260 GTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACC
* * * * *
19279522 GACGGCATTAGAGTTCC-AGCAATCGAAGGGGCCAGGGAGGTGTGCGCACATTATGTGCGATGGG
324 GACGGCATTAGGGTTCCGA-CGATCG-GGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGG
* * * *
19279586 TGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCCCATCAAACCTTGAGAACTCACACCCTCT
387 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
19279651 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
452 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
19279716 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGC
517 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
19279781 CAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCTAAAAATCCTT-CAAAAAAAATTTAA
582 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAA
* * * *
19279845 AAAAGCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGA
647 AAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
19279910 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
712 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
19279975 GCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGTGCATCCCG
777 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
19280040 TCAT-TCTGGCCGGCATAGT----GCCTGCCCGCTCGCCCGTTCGTTTCGTCGGTTGGCTTTG
842 TC-TCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * * * *
19280098 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGTGTTGCAGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
19280163 GCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTCTGGTCGGCTGAGCGC
66 GCATGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
19280228 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATACGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
* * * *
19280293 TTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATG
196 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATG
* * * * * *
19280358 TGTTGGTGCCACATTTTTCTTCGTCGGGGCACTATCGTCAGAGCATCGCCGAAGAACCTGACCGA
261 TGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA
* * * *
19280423 TGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGAGC
326 CGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGC
* ** * *
19280488 TGGTACTTGGCCCTTATATTGGCCCCCCATATCTCATCAAACCTTGAGAACTCACAACCCCTTAA
390 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
19280553 AGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTT
455 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
19280618 TTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
520 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
19280683 CAAAAATACAAGGATCATGTATACCAAGTTTGGGGCCGAAAA-TCCTTCCGAAAAAATTTTAAAA
585 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAAATTTAAAA
* * * *
19280747 AAT-CTCGAACCGTAAAAAGTTTCAAAAA-CTGTGAAAAATA-AAAAGTGAGTCGTCTTGCAATA
649 AATCCT-GAACCGCAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAA-CGAGTCGTCTTGCCATG
* * *
19280809 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACACGCCATAAAAAGGGCATTGGCA
711 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*** *
19280874 CATAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCC
776 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
19280939 GTCTCTCTGGTCGATGA-AGT----GCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
841 GTCTCTCTGGCCGA-CATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * * * * * *
19280998 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGGCTGAGGGTTGCAGCTGCAGGATC-AGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-C
* ** * ** *
19281062 AGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTATGCATCTCGCCCCTCTGGTTGGCTGAGCA
65 AGCATGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
19281127 CCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
* * * * *
19281192 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
* * * * *
19281257 GTGCTGGTGCCGCATATTTCTT--------CACCATCATCGGAGCATTGCCGGAGAACCTGACCG
260 GTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * * * *
19281314 ACGACATTGGGGTTCCGACGATCGTGGGGCCGGGG-GGTGTGCGCACATGATATGTGATGGGTGC
325 ACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
19281378 TGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCAGCAAACCTCGAGAACTCACAGCCCCTTAA
390 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
19281443 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGTCCGAAATGAGGACACTT
455 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * *
19281507 TTTTCAAATGGCCACAAAAACTTGTACACTTCGAGTTTTTGGCTGAATTCTTTTCTGCATGCCAA
520 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** *
19281572 AAAAAATACAAGGATCACGTCTTCAAAGTTTGGGTTCAAAACCCCTTCCG-AAAAAATTTCAAAA
585 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTT-AAAA
** * * * *
19281636 AATCAAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATCAAA
649 AATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
19281701 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGGCATGC
714 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
19281766 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
779 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * ** * * * *
19281831 -CTCTGACCGACGTAGTGCTTGCCTGCCCGCCCGCCTGCTCATTTCGTCAGTTGACTTAG
844 TCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * * * * * * *
19281890 GCATACGGAGTTCATTCTCAGTCTAAGATTGGACCAAAACAAGGGTTGCAGCATCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** * *
19281955 GCACGCAG-AGGGGTACCCGACCGATCCCTGGCTTGCATATCCCACCCCTCTGGCCGGTTGAGCG
66 GCATGCAGAAGGGG-ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * **
19282019 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCATAGTCTAAGCATACGAA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
19282084 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-AGGCA
195 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCA
* **
19282148 TGTGCTGGTGCCGCATTTTTCTTCGCCAAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
259 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * * * * * *
19282213 GGCGGCGTTTGGGTTCCGGCGATCAGGGGGGCCGTGGA-GTGTGCGCACATGATGTGTGATGGAT
324 GACGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGT
* *
19282277 GCGGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
388 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
19282342 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
453 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * *
19282407 TTTTTTCAAAAGGTTACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTGTGCATACC
518 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
19282472 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAA
583 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAA
* ** * * *
19282537 AAATCCAGAACCGCAAAAAGTTTCCCAAATCGTGAAAAAAAGAAAATGAGTCGTCTTGCCATGGA
648 AAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
19282602 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
713 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
19282667 TAGAAATATGAAGATGTGCATAAACCCACCTACCACCCGATCGATCCATGGCTTGCGCATCCCGT
778 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
*
19282732 CTCTCTGGCC-AGCATAGTGCCCGCCCGCCCCCCCGCCTGCTCGCCCGCTCGTTTCGTCGGTTGG
843 CTCTCTGGCCGA-CATAGTGCCCGCCCG----CCCG-C--C-CGCCCGCTCATTTCGTCGGTTGG
19282796 CTTAG
899 CTTAG
* * ** * *
19282801 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTATGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
19282866 ACATGCAG-AGAGGGACACGGCCGATCCCCGGCTTGCGCATCCCGCCCCTATGGCCGGCTGAGCG
66 GCATGCAGAAG-GGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
19282930 CCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
* * * * *
19282995 GTTCATTCCCAGTCTAAGATCGGACCAGACAGAGGGTTGCGGTAGCACATGTTGGGCTCGGGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
** ** * ** *
19283060 GCACTGGTGCCACATTTTTCTTTACCGAGGCACCATCACCGGAGCATCGTCGGAGAACCTAACCG
260 GTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * * * * * * *
19283125 GCGGCGTTCGAGTTCTGGCGATCGGGGGGCCGGGTGGGGTGTGCACACATGATGTGCGATGGGTG
325 ACGGCATTAGGGTTCCGACGATCGGGGGGCCGGG-GAGGTGTGCGCACATGATGTGCGATGGGTG
* **
19283190 -TGAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCATACCTTAAGAACTCACACCCCCTT
389 CTG-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
19283254 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
453 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * * *
19283319 TTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAATTATTAGCTGAATTTTTTTGTGCATACG
518 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
19283384 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAATTTTAA
583 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAA-TTTAA
* *
19283448 AAAAT-CTGGAACCGCAAAAAGTTTCCAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATG
647 AAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
19283512 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
711 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*** * * *
19283577 CATAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCTC
776 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
19283642 GTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGGCCACCCGGCCGCCCGTTCATTTCGTCTGTTG
841 GTCTCTCTGGCCGACATAGTG----CCCGCCC-G---CCCGCCCGCCCGCTCATTTCGTCGGTTG
19283707 GCTTAG
898 GCTTAG
* * * * ** * * *
19283713 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAATAGGATTGGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
19283778 GCACGCAGAAGGGGACACGGCCGATCCCCGGCTTGCGTATCCTGCCCCTCTGGCCGGCTGAGCGC
66 GCATGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
19283843 CTGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTTTTAGTCTAAGCATACAAAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT----A---C-------G-----G-------AG
* * ** *
19283908 TTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATTGGACTAGATCGAGGGTTGC
170 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* * *
19283973 CGCAGCACATGCTGGGCT----CA-G-GCTGGTGCCACCTTTTTCTTCGCCAGGGCACCATCGTC
235 GGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTC
* * * * * *
19284032 GGATCATCGTCGGAGAACTTGACCGACGGCACTAGGGTTCCGCCGATCGGGGGGCTGAGG-GGTG
300 GGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGAGGTG
* * *
19284096 TGCACACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAA
365 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
19284161 ACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCAT
430 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
19284225 TAAAGT-TTTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTTGAGTTTTT
495 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * * *
19284289 AGCCGATTTTTTTTGTTCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTTGAGCCAAA
560 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
19284354 ACTCCTTTC-AAAAAAATTTTAACAAATCCTGAACTGCAAAAAGTTTTAAAAATCATGAAAAATA
625 ACTCCTTCCGAAAAAAA-TTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
* *
19284418 AAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
689 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
19284483 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
754 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
19284548 GGATGCACGGCTTGCGCATCCCATCTCTCTAGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCT
819 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCT
* * * *
19284613 CGTTTCGTTGATTGGCTTAT
884 CATTTCGTCGGTTGGCTTAG
* * * * *
19284633 GCATACGGAGTTCATTCCCAGTCTAAGATCGTACCATATCGAGGGTTACGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
19284689 CATGCTGGGC
Statistics
Matches: 5599, Mismatches: 630, Indels: 242
0.87 0.10 0.04
Matches are distributed among these distances:
867 2 0.00
868 210 0.04
869 342 0.06
870 61 0.01
872 2 0.00
873 155 0.03
874 1 0.00
877 2 0.00
879 5 0.00
882 3 0.00
883 2 0.00
884 2 0.00
885 3 0.00
888 28 0.01
889 297 0.05
890 126 0.02
891 15 0.00
892 322 0.06
893 1 0.00
894 155 0.03
895 2 0.00
898 1 0.00
899 391 0.07
900 535 0.10
901 133 0.02
902 583 0.10
903 159 0.03
904 315 0.06
905 50 0.01
907 4 0.00
908 1 0.00
910 11 0.00
911 333 0.06
912 630 0.11
913 3 0.00
916 14 0.00
917 1 0.00
919 1 0.00
920 74 0.01
923 1 0.00
924 6 0.00
926 1 0.00
928 323 0.06
929 55 0.01
930 77 0.01
931 4 0.00
932 77 0.01
933 1 0.00
934 2 0.00
938 77 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATG
TGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA
CGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAA
TCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
Found at i:19280293 original size:26 final size:26
Alignment explanation
Indices: 19280257--19280309 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19280247 GTTGACTTAG
19280257 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* *
19280283 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
19280309 G
1 G
19280310 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:19281193 original size:26 final size:26
Alignment explanation
Indices: 19281157--19281209 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19281147 GTTGACTTAG
19281157 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19281183 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19281209 G
1 G
19281210 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19282086 original size:26 final size:26
Alignment explanation
Indices: 19282049--19282101 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19282039 GTTGACTTAG
*
19282049 GCATACAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
19282075 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCACAGTCTAA
19282101 G
1 G
19282102 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:19282997 original size:26 final size:26
Alignment explanation
Indices: 19282960--19283012 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19282950 GTTAACTTAG
*
19282960 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19282986 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19283012 G
1 G
19283013 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19283909 original size:26 final size:26
Alignment explanation
Indices: 19283891--19283950 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
19283881 GTTCATTTTT
19283891 AGTCTAAGCATACAAAGTTCATTCCC
1 AGTCTAAGCATACAAAGTTCATTCCC
**
19283917 AGTCTAAGCATATGAAGTTCATTCCC
1 AGTCTAAGCATACAAAGTTCATTCCC
19283943 AGTCTAAG
1 AGTCTAAG
19283951 ATTGGACTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
AGTCTAAGCATACAAAGTTCATTCCC
Found at i:19285400 original size:717 final size:715
Alignment explanation
Indices: 19283932--19285385 Score: 2120
Period size: 717 Copynumber: 2.0 Consensus size: 715
19283922 AAGCATATGA
* * * * * *
19283932 AGTTCATTCCCAGTCTAAGATTGGACTAGATCGAGGGTTGCCGCAGCACATGCTGGGCT----CA
1 AGTTCATTCCCAGTCTAAGATCGGACCATATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCA
* * * ** ** * *
19283993 -G-GCTGGTGCCACCT-TTTTCTTCGCCAGGGCACCATCGTCGGATCATCGTCGGAGAACTTGAC
66 TGTGCTGGTGCCGCATCTTTT-TTCACTGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
* ** *
19284055 CGACGGCACTAGGGTTCCGCCGATCGGGGGGCTGAGGGGTGTGCACACATGATGTGCGATGGGTG
130 CAACGGCACTAGGGTTCCAACGATCGGGGGGCTGAGGGGTGTGCACACATGATGTGCGATGCGTG
*
19284120 CTGGAACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAA
195 CTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAA
* * *
19284185 AGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTTTTGAAATGGAGACACTTT
260 AGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTTCTGAAATGGAGACACTTT
* * * * *
19284250 TTTCAAATGGTCACAAAATCTCGTACACTTTGAGTTTTTAGCCGATTTTTTTTGTTCATGCCAAA
325 TTTCAAATGGTCACAAAATCTCATACACTTCGAGTTTTTAGCCGAATGTTTTTGTGCATGCCAAA
* ** * * *
19284315 AAAAATACAAGGATCACGTCTACGAAGTTTTGAGCCAAAACTCCTTTCAAAAAAATTTTAACAAA
390 AAAAATACAAGGATCACGTCTACCAAGTTAGGAGCCAAAACCCCTTCCAAAAAAATTTTAAAAAA
* *
19284380 TCCTGAACTGCAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCACGAAACT
455 TCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCACGAAACT
*
19284445 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
520 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
19284510 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATGCACGGCTTGCGCATCCCATCTC
585 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCACATCTC
* * * * *
19284575 TCTAGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTTGATTGGCTTATGCATACG
650 TCTAGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTAGATTGGCTTAGGCATACA
19284640 G
715 G
*
19284641 AGTTCATTCCCAGTCTAAGATCGTACCATATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCATATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCA
*
19284706 TGTGCTGGTGCCGCATCTTTTTTCACTGGGGCACCATCACCGGAGCGTCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATCTTTTTTCACTGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACC
* * * *
19284771 AACGGCATTAGGGTTCCAACGATCGAGGGGG-TCGGGGGGTGTGCGCAGATGATGTGCGATGCGT
131 AACGGCACTAGGGTTCCAACGATCG-GGGGGCT-GAGGGGTGTGCACACATGATGTGCGATGCGT
* *
19284835 GCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCGAGAACTCACACCCCCTT
194 GCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
* *
19284899 ATAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGT-TCTGAAATGGAGACAC
*
19284964 TTTTTTCAAATGGTCACAAAATCTCATACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCC
322 TTTTTTCAAATGGTCACAAAATCTCATACACTTCGAGTTTTTAGCCGAATGTTTTTGTGCATGCC
* * *
19285029 AACAAAAATACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACCCCTTCCTAAAAAATTTTAAA
387 AAAAAAAATACAAGGATCACGTCTACCAAGTTAGGAGCCAAAACCCCTTCCAAAAAAATTTTAAA
* * *
19285094 AAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAATATAAAAAACGAGTCGTCTTGCCATGA
452 AAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCACGA
* *
19285158 AACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCAC
516 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
19285223 GTAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCAC
581 GCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCAC
* * * *
19285288 ATCTCTCTGGCCGACATAGTGCCCGCCCGTCCGCTCGCCCTCTCGTTTCGTCAG-TTGGCTTAGG
645 ATCTCTCTAGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT-AGATTGGCTTAGG
19285352 CATACAG
709 CATACAG
*
19285359 ATTTCATTCCCAGTCTAAGATCGGACC
1 AGTTCATTCCCAGTCTAAGATCGGACC
19285386 GACTGAGGGT
Statistics
Matches: 659, Mismatches: 72, Indels: 19
0.88 0.10 0.03
Matches are distributed among these distances:
709 52 0.08
713 2 0.00
714 1 0.00
715 114 0.17
716 98 0.15
717 250 0.38
718 141 0.21
719 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (715 bp):
AGTTCATTCCCAGTCTAAGATCGGACCATATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATCTTTTTTCACTGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACC
AACGGCACTAGGGTTCCAACGATCGGGGGGCTGAGGGGTGTGCACACATGATGTGCGATGCGTGC
TGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAA
GAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTTCTGAAATGGAGACACTTTT
TTCAAATGGTCACAAAATCTCATACACTTCGAGTTTTTAGCCGAATGTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTAGGAGCCAAAACCCCTTCCAAAAAAATTTTAAAAAAT
CCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCACGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCACATCTCT
CTAGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTAGATTGGCTTAGGCATACAG
Found at i:19285818 original size:721 final size:717
Alignment explanation
Indices: 19284902--19286246 Score: 2088
Period size: 721 Copynumber: 1.9 Consensus size: 717
19284892 CCCCCTTATA
19284902 GAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
1 GAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
19284967 TTTCAAATGGTCACAAAATCTCATACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAC
66 TTTCAAATGGACACAAAATCTCATACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAA
* * *
19285032 AAAAATACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACCCCTTCCTAAAAAATTTTAAAAAA
131 AAAAATACAAGGATCACGTATACCAAGTTAGGGGCCAAAACCCCTTCCGAAAAAATTTAAAAAAA
* * *
19285097 TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAATATAAAAAACGAGTCGTCTTGCCATGAAACT
196 TCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACT
* * * *
19285162 TCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCACGTAG
261 TCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA-
19285227 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCACATCT
325 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCACATCT
* * * *
19285292 CTCTGGCC-GACATAGTGCCCGCCCGTCCGCTCGCCCTCTCGTTTCGTCAGTTGGCTTAGGCATA
390 CTCTGGCCAG-CATAGTGCCCG--C--CCGC-CGCCCGCTCGCTTCGTCAGTTGACTTAAGCATA
* * *
19285356 CAGATTTCATTCCCAGTCTAAGATCGGACC-GACTGAGGGTTACGGCAGTAGAATCGACAGCACG
449 CAGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTACGGCAGTAGAATCGACAGCACA
* *
19285420 CAGAGGGGGACACGGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTAAGCACTCGCA
514 AAGAGGGGGACACGGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTAAGCACCCGCA
* *
19285485 CTCTCATTTCATGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
579 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
19285550 AGGGTTGCAACAGCAAATGCTGGGCTCAGGCATGTGTTGGTGTCACATTTTTCTTCATCGGGGCA
644 AGGGTTGCAACAGCAAATGCTGGGCTCAGGCATGTGTTGGTGTCACATTTTTCTTCATCGGGGCA
19285615 CCATCGTCG
709 CCATCGTCG
*
19285624 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTT
1 GAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
** *
19285688 TTTCAAATGGACACAAAATCTTGTATACTTCGAGTTTTTAGCTGAAT-TTGTTTGTGCATGCCAA
66 TTTCAAATGGACACAAAATCTCATACACTTCGAGTTTTTAGCTGAATGTT-TTTGTGCATGCCAA
* *
19285752 AAAAAATACAAGGATCATGTATACCAAGCTT-GGGGCCAAAACTCCTTCCGAAAAAATTTAAAAA
130 AAAAAATACAAGGATCACGTATACCAAG-TTAGGGGCCAAAACCCCTTCCGAAAAAATTTAAAAA
*
19285816 AATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
194 AATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAA
*
19285881 CTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
259 CTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * * *
19285946 AAGAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCTCGGCTTGCGCATCCCATC
324 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCACATC
* * * * *
19286011 TCTCTGGCCAGCGTCGTGCCTGCCCGCCGCCCGCTCGCTTCGTCGGTTGACTTAAGCATACGGAG
389 TCTCTGGCCAGCATAGTGCCCGCCCGCCGCCCGCTCGCTTCGTCAGTTGACTTAAGCATACAGAG
* * * *
19286076 TTCATTCCCAGTCTATGATCGGACCAAATTGAGGGTTACGGCAGTAGGATCGATAGCACAAAGAG
454 TTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTACGGCAGTAGAATCGACAGCACAAAGAG
** ** ** * *
19286141 GGGGACTTGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
519 GGGGACACGGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTAAGCACCCGCACGCTC
*
19286206 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
584 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
19286247 ATAACCATAT
Statistics
Matches: 565, Mismatches: 54, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
715 55 0.10
716 131 0.23
718 1 0.00
720 78 0.14
721 250 0.44
722 50 0.09
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (717 bp):
GAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGACACAAAATCTCATACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTATACCAAGTTAGGGGCCAAAACCCCTTCCGAAAAAATTTAAAAAAA
TCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAA
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCACATCTC
TCTGGCCAGCATAGTGCCCGCCCGCCGCCCGCTCGCTTCGTCAGTTGACTTAAGCATACAGAGTT
CATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTACGGCAGTAGAATCGACAGCACAAAGAGGG
GGACACGGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTAAGCACCCGCACGCTCAT
TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
CAACAGCAAATGCTGGGCTCAGGCATGTGTTGGTGTCACATTTTTCTTCATCGGGGCACCATCGT
CG
Found at i:19287273 original size:26 final size:26
Alignment explanation
Indices: 19287243--19287292 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
19287233 TGACTGTGGC
*
19287243 ATACGAAGTTCATTCCCAGTCTAAAA
1 ATACGAAGTTCAGTCCCAGTCTAAAA
* *
19287269 ATACGGAGTTCAGTCCTAGTCTAA
1 ATACGAAGTTCAGTCCCAGTCTAA
19287293 GATCGGACCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (26 bp):
ATACGAAGTTCAGTCCCAGTCTAAAA
Found at i:19288159 original size:26 final size:26
Alignment explanation
Indices: 19288123--19288174 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19288113 TGTTTCATGC
*
19288123 CATACGGAGTTCATTTCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19288149 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19288175 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:19289019 original size:26 final size:26
Alignment explanation
Indices: 19288983--19289035 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19288973 GTTGACTTAG
19288983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19289009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19289035 G
1 G
19289036 AGCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19289912 original size:26 final size:26
Alignment explanation
Indices: 19289863--19289915 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19289853 GTTGACTTAG
*
19289863 GCATACGGAGTTCATTCTCGGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
19289889 GCATACGGAGTTCATT-TCAAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
19289915 G
1 G
19289916 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:19290805 original size:26 final size:26
Alignment explanation
Indices: 19290769--19290821 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19290759 GTTGACTTAG
*
19290769 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACAGAGTTCATTCCGAGTCTAA
*
19290795 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCGAGTCTAA
19290821 G
1 G
19290822 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCGAGTCTAA
Found at i:19292580 original size:26 final size:26
Alignment explanation
Indices: 19292544--19292596 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19292534 GTTGACTTAG
*
19292544 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19292570 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19292596 G
1 G
19292597 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19293474 original size:26 final size:26
Alignment explanation
Indices: 19293438--19293487 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19293428 GTTCACTTAG
*
19293438 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACAGAGTTCATTCCCAGTCTCA
19293464 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
19293488 AAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTCA
Found at i:19293851 original size:894 final size:893
Alignment explanation
Indices: 19288266--19301304 Score: 15333
Period size: 902 Copynumber: 14.7 Consensus size: 893
19288256 CGGCAGCAAA
* * * * * *
19288266 GGGGTTCCAGTGATCGAGGGGGTCGGGGGGTGTGCGCAAATGATGTGTGATGGGTACTGGCACTT
1 GGGGTTCCGGTGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
19288331 GGCCCTTATATTGG-CCCCTATCCCTCATCAAAGCTCAAGAACTCACACCCCCTTAAAAAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
** * *
19288395 TGAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCCAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
19288460 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * * *
19288525 GAAGGATGACGTCTACCAAGTTTGGGGCCAAAACT-CATTCTAAAAAAATTTAAAAAAATCTCAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGA
* * * ** *
19288589 ACTGCAAAAATTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
324 ACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * *
19288654 GAAGGCTTATGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATAT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* * * *
19288719 GAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGTTTGCGCATCCCGTGTCTCTTGC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * *
19288784 CGGCGTAGT----GCCTGCCTGCTTGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCCAG
519 CGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * ** * ** *** *
19288845 TCTAAGATCGGACCAGACCGAGGGTTACGGCAGTAGGATCAACAGCATGTAGAGGGGGACCCGGC
584 TCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGAC
* * ** ** * ** *
19288910 CAATCCCCGACTTATGCATCCCTTCCCTCTGGCCGGTTGAGCGCCCAAACGTTCGTTTCGTGGGT
649 CGAT-CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
19288975 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGCG
713 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
19289040 GACCGAACCGAGGGTTCCGGCAGCACATGCTAGGCTCGAGCATGTGATAGTGCCGCATTTTTCTT
778 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * ** * ** *
19289105 CGTCAGGGCACCATCGTCGGAGCATCACCGGAGGACCTGATGGACGACATT
843 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
** *
19289156 GGGGTTCC---GA-C----GATC----GGAG-G-G-----G-TGTGCGATGGGTGCTGGTACTTG
1 GGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
19289201 GCCCTTATATTTTGCTCCCCTATCCCTAATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
66 GCCCTTATA-TTGGC-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
19289266 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
19289331 ATGGTCACAAAATATTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
19289396 ACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTTCTTACGGAAAAATTTTAAAAAATCCCGA
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGA
* * *
19289461 ACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGT
324 ACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
19289526 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAATAT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* *
19289591 GAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * **
19289656 CGACGTAATGCCCGCCCACCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATGTGGAGTTCATTC
519 CGACGTAGTGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * * **
19289721 CCAGTCTAAGATGAAATC-GAACCGAAGGTTCTGGTAGTAGGATTGGCAGCATGCAGAGGGGGAC
580 CCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGAC
* * * * * * *
19289785 CCAGA-CGATCCCCGACTTGTGCACCCCACCCCTCTGGCAGGCTGAGCACCCGCACACTTGTTTC
644 CC-GACCGAT-CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * * *
19289849 ATGGGTTGACTTAGGCATACGGAGTTCATTCTCGGTCTAAGCATACGGAGTTCATTTCAAGTCTA
707 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
19289914 AGATCGGACCAGACCAAGGGATGCGGCAACACATGCTGGGCTTGGGCATGTGCTGTTGTCGCATT
772 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * *
19289979 TTTCTTCGTCAGGGCACCATCGCTGGAGCATCGTCGGAGAGCCTGACC-AGCGGCATT
837 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATT
* * *
19290036 GGGGTTCCGGCGATCGGGGTGGCCGGGTGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTAC
1 GGGGTTCCGGTGATCGGGG-GGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
19290101 TTCGCCCTTATATTGGCCCCATATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
63 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
19290166 TTTGAGATTATACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCA
128 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
19290231 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATGCCAAAAAAAA
193 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAA
* *
19290296 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAT-CT
257 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCC
** * *
19290360 GAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCA
322 G-AACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * **
19290425 CGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGCCACACAGAAA
386 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
* * *
19290490 TATAAAGATGTGCCTAAACCCACTTACGACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
451 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
19290555 GGTCGGCGTAGTGCCCGCCCGTCCACCCGCCCGTTCGTTTCGTCGATTGGCTTTGGCATGCGGAG
516 GGCCGACGTAGTGCCCGCCCG----CCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * *
19290620 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCCGCATGATCGGCAGCACGCAGAA
573 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAG
* * * * ** * * *
19290685 GGGGACCCGATCGATCGTCGACTTTCGCATCCTTCCCTTCTGGCCGGCTGACCGCCCACACGCTC
638 GGGGACCCGACCGATC-CCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
** * * * *
19290750 GTTTTTTAGGTTGACTTAGGCATACGGAGTTCATTCCGAGTCTAAGCATACAGAGTTCATTCCTA
702 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
19290815 GTCTAAGATTGGACCAGACCGAGGGTTACGACAGCACATGCAGGGCTCGAGCATGTGCTGGTGCC
767 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * **
19290880 GCATTTTTCTTCGTCGGGGCACCAATTGCCGGAGCATCGTCAGAGAACTTGACTGACAACATT
832 GCATTTTTCTTCGTCGGGGCACC-ATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * *
19290943 GGGGTTCCGGCGATCAGGGGGGCCGAGGTGGTGTGTGCACATGATGTGGGATGGGTGCTGGTACT
1 GGGGTTCCGGTGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
19291008 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAATGAGCAT
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
19291073 TTGAGATTTTACAGGTTTGTTACCAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
19291138 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGGATTTTTTTGTGCACGCCAACAAAAGT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
19291203 ACAAGGATCACGTCTACTAAGTTTGGGGCCAAAA-GCCTTCCGAAAAAATTTTAAAAAATCTCGA
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGA
* * * * *
19291267 ACCGCAATAAGTTTCAAAAATCATGAAAAATAGAAAATGAATCGTCTTGCCATGAAACTTCACGT
324 ACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
19291332 GAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
*
19291397 GAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * *
19291461 TGGCGTAGTGCCCGTCGACCCATCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGATC
519 CGACGTAGTG-CC--CG---C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * ***
19291526 ATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGTAGCAACAGGATCGGTAGCATGTAGAGGG
576 ATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGG
* * * * * * * *
19291590 GGACCCGGCCGATCCCCGTCTTGCCCATCCCGCCCTTTTGGCCGGCTGAGCGCCCGCACCCCCGT
640 GGACCCGACCGAT-CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
19291655 TTCGTGGGTTGACTTAGGCATATGGAG-T--TT---A-T-T---C---C------CA-----A-T
704 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * *
19291694 CTCAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGTTGGGGCATGTGCTGGTGCCAC
769 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * *
19291759 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACTGGCGACGTT
834 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * * * * *
19291819 GGGCTTCTGGTTATCAGGGGCCCGGGGGGGTGTGCGCACATGATGTGAGGTGGGTGCTGGTACTT
1 GGGGTTCCGGTGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
19291884 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAAGAACTCACACCCCCTTAATGAGCAT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCAT
* * * *
19291948 TTGAGATTTTACAGGTTTGTTACCAGTACCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
19292013 ATGGTCACAAAATCTTCTACACTTCAAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAGT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* ** * * *
19292078 ACAA-GATCACATCTACCAAGTTTTTGGCCAAAACACCTTCCGAAAAAATTTAAAAAAATCCCGA
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGA
* * *
19292142 ACCGTAATAAGTTTGGAAAATCATGACAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
324 ACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
19292207 GAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATAT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* *
19292272 GAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * *
19292337 CGACGTAGTGCCCGCCCACCCGCTCGCTCGTTTCATCGGTTGGCTTCGGCATACGGAGTTCATTC
519 CGACGTAGTGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * ** *
19292402 CTAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGATCGGCAGCACGTAGAGTGGGACC
580 CCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACC
* * * * *
19292467 CGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCGCGCACATTTCGT
645 CGACCGATCCC-GGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
*
19292532 GGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
709 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** * * * *
19292597 ATCAGATCGGATCGCTGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGTATTTT
774 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* *** * *
19292662 TCTTCGTCGGGGCACCATCGTCGGAGCATTACCGGAGAACCTGACTGGCGGCATT
839 TCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * *
19292717 CGGGTTTCGGTGATCGGGGGGCCGGGGGGGTGTGCAG-ACATGATGTGTGATAGGTGCTGGTACT
1 GGGGTTCCGGTGATCGGGGGGCC-GGGGGGTGTGC-GCACATGATGTGCGATGGGTGCTGGTACT
** * *
19292781 TGGAACTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
19292846 TTGAGATTTTACAAGTTTGCTGCCACTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
19292911 ATGGTCGCAAAAGCATGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGTATGCCAACAAAAAT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* ** *
19292975 ACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTTATTTCGAAAAAATTTTAAAAAATCCCAA
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGA
** * * * *
19293040 ACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACGA
324 ACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * **
19293105 GAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCACGTAGAGGTAT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* * * ** *
19293170 GAAGATGTACCGAAACCCACCTACCACCCTATCGATCCACGGCCTGCTTATCCCGTCTCTCTGGT
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
19293235 CGACGTAGTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATCCGGAGTTCATTCCCAT
519 CGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * ** *
19293300 TCTAAGATCAGACCAAACTGAGTGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGC
584 TCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGAC
* * * * * * *
19293365 CGATCGCCGGGTTGCACATCCCAACCCTCCGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGT
649 CGATC-CCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
19293430 TCACTTAGGCATACGGAGTTCATTCCCAGTCTCAGCATACAGAGTTCATTCCCAGTCTAAGATCG
713 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
19293495 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTT
778 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* ** * *
19293560 CGTTGGGGCACCATCAACGGAGCATCGTCGGAGAGCCTGACCGACGGTATT
843 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * *
19293611 AGGGTTTCGGTGATAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
1 GGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
19293676 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
66 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
19293741 GAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAAT
131 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
** * *
19293806 GGTCACAAAATCTTGTACACTTCGAGTTTTTTCCTGAATTTTTTTGTGCACGCCAACAAAAGTAC
196 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
19293871 GAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCAAAAAAATTTTAAAAAATCCCGAAC
261 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
* * * *
19293936 CGCAATAAGTTTCGAAAATGATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGA
326 CGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
19294001 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGG
391 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
*
19294066 AGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
456 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * *
19294131 GCGTAGTGCCCACCCGCCCACCTGCCCACTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
521 ACGTAGTG----CCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* *
19294196 TCCCAGTCTAAGATC-GAACCAGA-TCGAGGGTTGTGGCAGCAGGATCGCCAGCATACAGAGGGG
578 TCCCAGTCTAAGATCAG-ACCAGACT-GAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGG
* * * ** *
19294259 GACTCGACCGATCCCCAGCATATGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTT
641 GACCCGACCGAT-CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
19294324 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAAGCATACGGAGTTCATTCCCATTC
705 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* *
19294389 TAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGCGG-TCGAGCATGTGCTGGTGCCGC
770 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG-GGCTCGGGCATGTGCTGGTGCCGC
* * * * * *
19294453 ATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACAGTATT
834 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * *
19294513 GAGGTTTC-GTCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTT
1 GGGGTTCCGGT-GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
19294577 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
19294642 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAT
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
19294707 TGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
19294772 CAAGGATCGCATCTACCATGTTTGGGGCAAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAA
** * * * * * * *
19294837 CCACAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATATAGCCATGAAACTTCACGGG
325 CCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
19294902 TAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCATTCGCACGTAGAAATATG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* *
19294967 AAGATGTGCC-AAACCCACCTACCACCCTATCGATCCAGGGCTTGCGCATCCCGTCTCTCTGGTC
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
19295031 GACGAAGTTTCGACCGCCCGCTCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCAT
520 GACGTAG--T-----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** *
19295096 TCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGAA
578 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGA
* * * * **
19295161 CCCGATCGATCCTCGACTTGCGCATCCCACCCCTCT-ACCTGGCTGAGTGCCTACACGCTCGTTT
643 CCCGACCGATCC-CGGCTTGCGCATCCCACCCCTCTGGCC-GGCTGAGCGCCCGCACGCTCGTTT
* *
19295225 C-------G---TAGG--T--TGA---CATT----G-----GCATATGGAGTTCATTCCCAGTCT
706 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
** **** * * **
19295264 AAGATCGGACCGGATTGAGGGTTGCTATGGCACATGCTGGGCTCGGGCATGTGCTAGTACCATAT
771 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * **
19295329 TTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGCCCGAGAACCTGATCGGTGGCATT
836 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * * *
19295387 AGGGTTCCGGTGATC-----G--GAGGGGTGTGCGCATAGGATGTGTGATGGGTGCTGGTA----
1 GGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * * * *
19295441 ---C-----TTGGCCCCCTATGCCTTATCAAACCTCGAGAACTCTCACCCCCATAATGAGTATTT
66 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
19295498 GAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATAGGGACATTTTTTTCAAAT
131 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
19295563 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCGACAAAAATAC
196 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * * *
19295628 AAGGATCACCTTTACCAAGTTTGGGGCCAAAAATACTTTCGAAAAAATTTTAAAAAATTCCAAAC
261 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
* * *
19295693 CGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGA
326 CGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
** *
19295758 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCATTGGCACATAGAAATATGA
391 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
*
19295823 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCG
456 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * *
19295888 GCATAGTGCCTGCCCCGCTCACCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGATCATTCC
521 ACGTAGTGCCCG-CCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* ** * * **
19295953 CAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGATCGGTAGCACGTAGAGGGGGACCC
581 CAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCC
* * * * *
19296018 GGCCGATCCCCGTCTTGCGCATCCCGCCCTTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
646 GACCGAT-CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
** * *
19296083 AATTGACTTAGGCATATGGAGTTTATTCCCAG--T---C-T-C--AG---------A-T-T---A
710 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
19296125 ---GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTGGGGTATGTGTTCGTGCCGCATTTTT
775 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * *
19296187 CTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACTGGCGACGTT
840 CTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * *
19296241 GGGCTTCCGGTTATCGGGGGCCCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTG
1 GGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
19296306 GTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTGAAGAGCATTT
66 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
19296371 GATATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACAGTTTTTTCAAAT
131 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * *
19296436 GGTCACAAAATCTTGTGCACTTCGAGTTTCTAGCTGAATTTTTTTATGCATGTCAACAAGAATAC
196 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
19296501 GAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCCCAAAC
261 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
* *
19296566 CGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGA
326 CGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
19296631 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGA
391 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
* * *
19296696 AGATGTCCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCG
456 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
19296761 ACGTAGTGCCCGCCCGCTCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCA
521 ACGTAGT----G--C-C-CGCCCG-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * ** ** ** * * *
19296826 TTCCCTTTCTAAGAT-TGAACTGGACCAAGGGTTGCAGTAGCAGGATCGACAGCACATAGAGGGG
577 TTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGG
* * * *
19296890 GACCCGACCGGTCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACACTCGTT
641 GACCCGACCGAT-CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
19296955 TCGTGGGTTGAC-T-----TA--G-G--------CA---T----AT--GGAGTTCATTCCCAGTC
705 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** * * *
19296994 TCAGATCGGACCGGACTAAGGGTTGCAGCAGCACATGCTGGGCTCGGGTATGTGCTGGTGCCGTA
770 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
** * * * *
19297059 TTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCAGAGAGCCTGA-CTAGCGGTATT
835 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATT
* *
19297118 GGGGTTCCGGTGATC-GGGGGCC-GGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACCTG
1 GGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
19297181 GCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAGAACTCACACCCCCTTAAAGAGCATTT
66 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
19297246 GAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACAGTTTTTTCTAAT
131 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
19297311 GGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCACAAAAATAC
196 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
19297376 AAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAAT-CCGAAA
261 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG-AA
** * * * * *
19297440 CCACAAAAATTTTTGAAAATCATGAAAAATAGAAAATGAGTTGTCTTGCGATGAAACTTCACGTG
325 CCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * * *
19297505 AAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATACG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* *
19297570 AAGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTAGCC
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
19297634 GGCGTGGTGCCCGGCCGCCCACCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
520 GACGTAGTG--C--CCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
19297699 TTCCCTGTCTAAGAT-TGAACCAGATTGAGGGTTGTGGTAGCAGGATTGGCAACACACAGAGGGG
577 TTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGG
* * * * * **
19297763 GACCCGGCCGATTCCCAGCTTGCGCAT-CCACCCCCTCTGGCCGGCTGTGTGCCCGCACACTCAA
641 GACCCGACCGA-TCCCGGCTTGCGCATCCCA-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
19297827 TTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
704 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * *
19297892 CTCAGATCAGACCGGACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCTGC
769 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
*
19297957 ATTTTTCTTCGCCGGGG---CA----C----CATCGTCGGAGAACCTGACCGACGGCATT
834 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* ** * *
19298006 GGGGTTACGACGATTGGGGGGCCGGGAAGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACT
1 GGGGTTCCGGTGATCGGGGGGCCGGG--GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * * *
19298071 TGGCCATTATATTGGCTCCTTATCCCTCATCAAAACTCGAGAACTCACACCCCCTTAAAGATCAT
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
19298136 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
19298201 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA-AAAATA
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-A
* *
19298265 TACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
258 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
* * ** *
19298330 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTCACCATTAAACTTCACG
323 AACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
19298395 TGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
388 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* **
19298460 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCTAGTCTCTCTGG
453 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * **
19298525 CCGGCGTAGTGATCGCCCGCCCGCCCGCCCGCTCATTTCGTCTATTGGCTTAGGCATACGGAGTT
518 CCGACGTA--G-T-----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* *** * * * * **
19298590 CATTCCCAGTCTAAGAT-TGAATTGGA-TCGGGGGTTGTGGCAACAGGATTGGTAGCATGCAGAG
575 CATTCCCAGTCTAAGATCAG-ACCAGACT-GAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAG
* * * *
19298653 GGTGACCC-AGCCGATCGTCGGCTTGCGCATCCCACCTCTCTGGCCGGCTGAGCGCCCGCATGCT
638 GGGGACCCGA-CCGATC-CCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
19298717 CGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTGCCATTCTAAGCATACGGAGTTCATTCCC
701 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
19298782 AGTCTAAGATTGGATCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
766 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * *
19298847 AACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAATCGTCGGAGAACCTGTCC-AGTGGCATT
831 CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATT
** * *
19298910 GGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTG
1 GGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
19298975 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGTACTCACACCCCCTTAAAGAGCATTT
66 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
19299040 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCG--ATGGGGATACTTTTTTCAAA
131 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAA
* * * * *
19299103 TGGTCACAAAATCTTGTACACTTCAAGCTTTTAGTTCAATTTTTTTGTGCATGCCAAAAAAAAAT
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAAT
* * * * * *
19299168 GCAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAGTTTAAAAAATCTCGA
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGA
* * * * **
19299233 ACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACAA
324 ACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
19299298 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATAT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* *
19299363 GAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTTCGCATCCCGTCTCTCTTGC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG--TCTC-T--
19299428 CGGCATAGTGCCCACCCGCCCGTCCACCCGCTCAGTGCCCGCCTGCCCGCCCACCCGCTCGTTTC
514 ---C----TG-------G-CCG---A--CG-T-AGTG--C-CC-GCCCG----CCCGCTCGTTTC
* * * * * * *
19299493 GTCAGTTGGCTTAGGCATATGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGA
549 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGG
* ** *
19299558 CAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCACCCCTCT
614 CAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCACCCCTCT
* * *
19299623 GGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAG-
678 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
19299687 -T---C-TA---AG---A-T--CAG-----G--C-G---GGACCGATGGTTGCGGCAGCACATTC
743 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
** * * * * * * ***
19299727 TAAGCTCAGGCATGTGCTGGTGCTGTATTTTTCTTTGTCGGGGCACCATCACCAGAGCATTACCG
808 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCG
* *
19299792 GGGAACCTGACCGGCGGCATT
873 GAGAACCTGACCGACGGCATT
* * * * * *
19299813 GGGGTTTCGATGATCGGGGGGCCGGGGGGTGTGCGTACTTGATGTGCGACGGGTACTGGTACTTG
1 GGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
19299878 GCCCTTATATTGGCCCCCTATGCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
66 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * * **
19299943 AAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAATGTGTCCGAAATAAGGACACTTTTTTCAAAT
131 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
19300008 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGGGAATGCCAACAAAAATAC
196 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * ** * *
19300073 AAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCAAAAAAATTTTGGAAGATCTCGAAC
261 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
* * ** * *
19300138 CGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAATAAGTCTTCTTGCCATGAAACTTCATGTGA
326 CGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * * *
19300203 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGCATTATGA
391 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
* *
19300268 AGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCG
456 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
19300333 ACATAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCGTACGAAGTTCATTCCCTA-T
521 ACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGT
** * * *
19300397 CTAAGATTGGATCAGACTGAGGGTTATGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACC
585 CTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACC
* * *
19300462 AATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTT
650 GAT-CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
19300527 GACTTAGGCATACGGAGTTCATTCCCCGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
714 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * *
19300592 ACCGGGCTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTGTTC
779 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* ** * * ** *
19300657 GTCGGGGCACCATCGTCGGAGCATCACCTGAGAACCTAATTGACGGTATT
844 GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * * * ***
19300707 GGGGTTCCGGCGATCGGGGGTGTCGGGGGGTGTAG-GCACATAATGTACGATGAGAATTGGTACT
1 GGGGTTCCGGTGATCGGGGG-GCCGGGGGGTGT-GCGCACATGATGTGCGATGGGTGCTGGTACT
* *
19300771 TGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
19300836 TTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
19300901 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTCTTGTCCATACCAACAAAAAT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * **
19300966 ACAATGATCAAGTCTACCAAGTTTGAGGCCAAAACTCC-CTCTGAAAAAATTTTAAAAAATCCTT
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCG
* *
19301030 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
323 AACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
19301095 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
388 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* * **
19301160 TGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACAGCTTTTGCATCCCGTCTCTCTGG
453 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
*
19301225 CCGACGTTGTGCCCGTCCTCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
518 CCGACGTAGT----G--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* *
19301290 AATTCCTAGTCTAAG
575 CATTCCCAGTCTAAG
19301305 CATACGGAGA
Statistics
Matches: 10489, Mismatches: 1299, Indels: 709
0.84 0.10 0.06
Matches are distributed among these distances:
849 4 0.00
850 3 0.00
854 248 0.02
855 354 0.03
856 55 0.01
857 1 0.00
859 2 0.00
860 6 0.00
861 36 0.00
862 1 0.00
864 4 0.00
866 1 0.00
867 33 0.00
868 181 0.02
869 35 0.00
870 12 0.00
871 13 0.00
872 577 0.06
873 575 0.05
874 221 0.02
875 825 0.08
876 102 0.01
877 351 0.03
878 2 0.00
879 6 0.00
880 312 0.03
881 7 0.00
882 1 0.00
883 15 0.00
884 2 0.00
886 4 0.00
887 2 0.00
888 35 0.00
889 12 0.00
890 17 0.00
891 7 0.00
892 408 0.04
893 511 0.05
894 704 0.07
895 453 0.04
896 8 0.00
897 34 0.00
898 557 0.05
899 97 0.01
900 146 0.01
901 302 0.03
902 1371 0.13
903 766 0.07
904 288 0.03
905 46 0.00
906 467 0.04
907 54 0.01
908 6 0.00
909 2 0.00
910 1 0.00
911 2 0.00
914 5 0.00
916 1 0.00
917 1 0.00
920 2 0.00
921 2 0.00
922 3 0.00
923 3 0.00
924 3 0.00
925 5 0.00
926 1 0.00
927 4 0.00
928 1 0.00
929 171 0.02
930 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
CGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
ACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCG
ATCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
CGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
Found at i:19294376 original size:26 final size:26
Alignment explanation
Indices: 19294340--19294392 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19294330 GTTGACTTAG
19294340 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
19294366 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
19294392 G
1 G
19294393 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:19297880 original size:26 final size:26
Alignment explanation
Indices: 19297844--19297893 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19297834 GTTGACGTAG
19297844 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19297870 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
19297894 CAGATCAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19298766 original size:26 final size:26
Alignment explanation
Indices: 19298737--19298789 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19298727 GTTGACTTAG
* *
19298737 GCATACGAAGTTCATTGCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19298763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19298789 G
1 G
19298790 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19299464 original size:27 final size:27
Alignment explanation
Indices: 19299434--19299487 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
19299424 TTGCCGGCAT
*
19299434 AGTGCCCACCCGCCCGTCCACCCGCTC
1 AGTGCCCACCCGCCCGCCCACCCGCTC
* *
19299461 AGTGCCCGCCTGCCCGCCCACCCGCTC
1 AGTGCCCACCCGCCCGCCCACCCGCTC
19299488 GTTTCGTCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.09, C:0.59, G:0.20, T:0.11
Consensus pattern (27 bp):
AGTGCCCACCCGCCCGCCCACCCGCTC
Found at i:19300570 original size:26 final size:26
Alignment explanation
Indices: 19300534--19300586 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19300524 GTTGACTTAG
*
19300534 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19300560 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19300586 G
1 G
19300587 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19300998 original size:895 final size:893
Alignment explanation
Indices: 19296094--19301304 Score: 6094
Period size: 903 Copynumber: 5.8 Consensus size: 893
19296084 ATTGACTTAG
* * * ** *
19296094 GCATATGGAGTTTATTCCCAGTCTCAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * **
19296159 CTGGGGTATGTGTTCGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * *** * *
19296224 ACCTGACTGGCGACGTTGGGCTTCCGGTTATCGGGGGCCCGGGGGGTGTGCGCACATGATGTGAG
131 ACCT-ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
19296289 ATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * **
19296354 CCCTTTGAAGAGCATTTGATATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGG
* * * *
19296419 GGACAGTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTCTAGCTGAATTTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
19296484 CATGTCAACAAGAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
19296549 TTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGT-TGTCTTG
455 TTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCT-TCTTG
19296613 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * *
19296678 TGGCACATAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
19296743 ATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCTCGCCCGCCCCGCTCGTTTCGTCGGTTGGC
648 ATCCCGTCTCTCTGGCCGACATAGT----G--C-C-CGCCC-ACCCGCTCGTTTCGTCGGTTGGC
* * ** ** ** *
19296808 TTAGGCATACAGAGTTCATTCCCT-TTCTAAGATTGAACTGGACCAAGGGTTGCAGTAGCAGGAT
704 TTAGGCATACGGAGTTCATTCCCTAGTCTAAGATTGAACCAGACTGAGGGTTGTGGCAGCAGGAT
* * *
19296872 CGACAGCACATAGAGGGGGACCCGACCGGTCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
769 CGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* *
19296937 AGCGCCCGTACACTCGTTTCGTGGGTTGAC-T-----TA--G-G--------CA---T--
834 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19296975 --AT--GGAGTTCATTCCCAGTCTCAGATCGGACCGGACTAAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
19297036 CTCGGGTATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * ** *
19297101 GCCTGA-CTAGCGGTATTGGGGTTCCGGTGATC-GGGGGCC-GGGGGTGTGCGCACATGATGTGA
131 ACCT-ACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
19297163 GATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* **
19297228 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATG
* * *
19297293 GGGACAGTTTTTTCTAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
19297358 GCATGCCCACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** * ** *
19297423 TTTTAAAAAATCCGAAACCACAAAAATTTTTGAAAATCATGAAAAATAGAAAATGAGT-TGTCTT
454 TTTTAAAAAATCCG-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCT-TCTT
* * *
19297487 GCGATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
19297552 TTGGCATGCAGAAATACGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
19297616 CATCCCGTCTCTTTAGCCGGCGTGGTGCCCGGCCGCCCACCCGCTCGCTCGTTTCGTCGGTTGGC
647 CATCCCGTCTCTCTGGCCGACATAGTG--C--CCGCCCA--C-C-CGCTCGTTTCGTCGGTTGGC
* *
19297681 TTAGGCATACGGAGTTCATTCCCT-GTCTAAGATTGAACCAGATTGAGGGTTGTGGTAGCAGGAT
704 TTAGGCATACGGAGTTCATTCCCTAGTCTAAGATTGAACCAGACTGAGGGTTGTGGCAGCAGGAT
* * * * * *
19297745 TGGCAACACACAGAGGGGGACCCGGCCGATTCCCAGCTTGCGCAT-CCACCCCCTCTGGCCGGCT
769 CGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCA-CCCCTCTGGCCGGCT
* * * ** *
19297809 GTGTGCCCGCACACTCAATTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19297870 GCATACGGAGTTCATTCCCAGTCTCAGATCAGACCGGACCGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* *
19297935 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGTCGGAG-A--ACC--TG-
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
19297994 ----ACCGACGGCATTGGGGTTACGACGATTGGGGGGCCGGGAAGGGTGTGCGCACATAATGTGC
131 ACCTACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGG--GGGTGTGCGCACATGATGTGC
* * * *
19298055 GATGGGTGCTGGTACTTGGCCATTATATTGGCTCCTTATCCCTCATCAAAACTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19298120 CCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATG
*
19298185 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
19298250 GCATGCCAA-AAAATATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
389 GCATGCCAACAAAA-ATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
19298314 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTC
453 ATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTTCTT
* * *
19298379 ACCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
19298444 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * * **
19298509 CATCTAGTCTCTCTGGCCGGCGTAGTGATCGCCCGCCCGCCCGCCCGCTCATTTCGTCTATTGGC
647 CATCCCGTCTCTCTGGCCGAC--A-T-A--G--TGCCCGCCCACCCGCTCGTTTCGTCGGTTGGC
*** * *
19298574 TTAGGCATACGGAGTTCATTCCC-AGTCTAAGATTGAATTGGA-TCGGGGGTTGTGGCAACAGGA
704 TTAGGCATACGGAGTTCATTCCCTAGTCTAAGATTGAACCAGACT-GAGGGTTGTGGCAGCAGGA
* ** ** * ** *
19298637 TTGGTAGCATGCAGAGGGTGACCC-AGCCGATCGTCGGCTTGCGCATCCCACCTCTCTGGCCGGC
768 TCGACAGCACACAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
* * * * *
19298701 TGAGCGCCCGCATGCTCGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTGCCATTCTAA
832 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19298763 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGA-TCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTGCGGCAGCACATGCTGG
** * * **
19298827 GCTCGGGCATGTGCTGGTGCAACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
19298892 AACCTGTCC-AGTGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACTTGATGTG
130 AACCT-ACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
19298956 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGTACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19299021 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCG--A
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-CGAAA
* * * * *
19299084 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGCTTTTAGTTCAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19299149 GTGCATGCCAAAAAAAAATGCAAGGATCACA-TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
387 GTGCATGCC-AACAAAAATACAAGGATCA-AGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
19299213 AAAAGTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT-TG
450 AAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCT-
**
19299277 TCTTGCCATGAAACTTCACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19299342 GGCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCT
578 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
19299407 TTCGCATCCCGTCTCTCTTGCCGGCATAGTGCCCACCCGCCCGTCCACCCGCTCAGTGCCCGCCT
643 TGCGCATCCCG--TCTC-T-----C----TG-------G-CCG---A------CA-T---AG--T
* * *
19299472 GCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATT-CCAAGTCTAAGA-
673 GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTAGTCTAAGAT
* * * * * ** * *
19299535 TCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCT
738 TGA-ACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCC
* *
19299600 CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTA
802 CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
*
19299665 GGCATACGGAGTTTATTCCCAGTCTAA
867 GGCATACGGAGTTCATTCCCAGTCTAA
* **
19299692 G-AT-C--AG----------G-C---G---GGACC-GA-T---GGTTGCGGCAGCACATTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * *
19299731 CTCAGGCATGTGCTGGTGCTGTATTTTTCTTTGTCGGGGCACCATCACCAGAGCATTACCGGGGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * *
19299796 ACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGCCGGGGGGTGTGCGTACTTGATGTGCG
131 ACCT-ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
19299861 ACGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTTGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * **
19299926 CCCCTTAAAGAGCATTTAAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAATGTGTCCGAAATAA
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGG
* *
19299991 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGGG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
19300056 AATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCAAAAAAAT
390 CATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** * ** * **
19300121 TTTGGAAGATCTCGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAATAAGTCTTCTTGC
455 TTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTTCTTGC
*
19300186 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
19300251 GCCATGCAGCATTATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCT
584 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
19300316 TCCCGTCTCTCTGGCCGACATAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCGTAC
649 TCCCGTCTCTCTGGCCGACATAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
19300381 GAAGTTCATTCCCTA-TCTAAGATTGGATCAGACTGAGGGTTATGGCAGCAGGATCGACAGCACA
714 GGAGTTCATTCCCTAGTCTAAGATTGAACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACA
* * *
19300445 CAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTTAGCGCCCGCA
779 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
*
19300510 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCGTCTAA
844 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19300560 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGGCTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19300625 CTCGAGCATGTGTTGGTGCTGCATTTTTGTTCGTCGGGGCACCATCGTCGGAGCATCACCTGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
** * * * * *
19300690 ACCTAATTGACGGTATTGGGGTTCCGGCGATCGGGGGTGTCGGGGGGTGTAG-GCACATAATGTA
131 ACCT-ACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGT-GCGCACATGATGTG
* *** * *
19300754 CGATGAGAATTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19300819 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCCGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAAT
* *
19300884 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTCTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
19300949 TCCATACCAACAAAAATACAATGATCAAGTCTACCAAGTTTGAGGCCAAAACTCCCTCTGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
19301014 ATTTTAAAAAATCCTTAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTTCTT
19301079 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
19301144 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACAGCTTTTG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
19301209 CATCCCGTCTCTCTGGCCGACGTTGTGCCCGTCCTCTCGCCCGCCCGCTCGTTTCGTCGGTTGGC
647 CATCCCGTCTCTCTGGCCGACATAGT----G--C-C-CGCCCACCCGCTCGTTTCGTCGGTTGGC
*
19301274 TTAGGCATACGGAGTTAATT-CCTAGTCTAAG
704 TTAGGCATACGGAGTTCATTCCCTAGTCTAAG
19301305 CATACGGAGA
Statistics
Matches: 3729, Mismatches: 447, Indels: 286
0.84 0.10 0.06
Matches are distributed among these distances:
868 191 0.05
869 6 0.00
870 10 0.00
871 3 0.00
872 5 0.00
873 154 0.04
874 55 0.01
875 414 0.11
876 6 0.00
877 132 0.04
879 4 0.00
880 1 0.00
881 1 0.00
882 2 0.00
883 4 0.00
884 1 0.00
886 1 0.00
888 18 0.00
889 14 0.00
890 5 0.00
891 7 0.00
892 401 0.11
893 324 0.09
894 108 0.03
895 449 0.12
896 4 0.00
897 8 0.00
898 2 0.00
899 105 0.03
900 1 0.00
901 77 0.02
902 372 0.10
903 526 0.14
904 101 0.03
905 1 0.00
907 3 0.00
908 4 0.00
910 1 0.00
911 1 0.00
914 3 0.00
915 1 0.00
921 1 0.00
922 3 0.00
925 2 0.00
927 1 0.00
928 6 0.00
929 188 0.05
930 1 0.00
931 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACATAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCTAGTCTAAGATTGAACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19301320 original size:26 final size:26
Alignment explanation
Indices: 19301278--19301330 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19301268 GTTGGCTTAG
* * *
19301278 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATACGGAGATAATTCCCAATCTAA
*
19301304 GCATACGGAGATCATTCCCAATCTAA
1 GCATACGGAGATAATTCCCAATCTAA
19301330 G
1 G
19301331 ATCAGAGCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATAATTCCCAATCTAA
Found at i:19302196 original size:26 final size:26
Alignment explanation
Indices: 19302167--19302219 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19302157 GTTGACTTAG
19302167 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
* *
19302193 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
19302219 G
1 G
19302220 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:19305678 original size:26 final size:26
Alignment explanation
Indices: 19305648--19305700 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19305638 GTTGACTTAG
*
19305648 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
19305674 GCATACAGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
19305700 G
1 G
19305701 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCACTCTAA
Found at i:19306756 original size:26 final size:26
Alignment explanation
Indices: 19306719--19306770 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19306709 GTTGACTTAG
19306719 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19306745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19306771 AATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19307830 original size:905 final size:905
Alignment explanation
Indices: 19305895--19308010 Score: 3181
Period size: 904 Copynumber: 2.3 Consensus size: 905
19305885 GCTGTGGCAA
* * * *
19305895 CACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCAGGGCACCA-ACGCCAGAG
1 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATA-GTCGGAG
* * *
19305959 CATCGTCGGAGAACCTGACCGGTGGCACTGGGGTTCCAGCGATCGGGGGGGCCGG-GGTGGTGTG
65 CATCGTCGGAGAACCTTACCGGTGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGAGGGGGTGTG
** * *
19306023 TACACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAAC
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
19306088 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTACTAGCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTACTAGCCATTA
*
19306153 AAGTGTCTGAAATGAGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGATTTCTTAG
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGATTTCTTAG
* *
19306218 CTGAATTTTTTTATGCATGCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAAA
325 CTGAATTTTTTTATGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGCGCCAAAAA
* *
19306283 TCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
390 TCCTTTCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
19306348 AACGAGTCGTCTCGCCAAGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAAATTACAAGC
455 AACGAGTCGTCTCGCCAAGAAACTTCACGCAAAGGCTTAAGGGACCATTGTATGAAATTACAAGC
* * *
19306413 CGTAAAAATGGCATTGGAATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGA
520 CATAAAAATGGCATTGGAATGGAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGA
*** * * *
19306478 TCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATGGTGCCCGCTCGCCCACCCGCCCGCTCGT
585 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACATAGTGCCCGCCCGCCCACCCGCCCGCTCAT
* * *
19306543 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATCAGACCGGACCGAGGGTTA
650 TTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTA
** * * *
19306608 TGGCAGTAGGATCGACAGCATCCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCACCCC
715 CAGCAGCAGGATCGACAGCATCCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCAC
* *
19306673 TCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCC
780 TCTAGCCGACTGAGCGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCC
* * * * *
19306738 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGGACCGGACCGAGGGTTGCGGTAG
845 AGTCTAAGCATACGAAGTTCATTCCAAGTCTAAAATCGGACCAGACCGACGGTTACGGTAG
** ** * *
19306799 CACATGCCAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGAAGC
1 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATAGTCGGAGC
* * * * *
19306864 ATCGCCGGAG-AGCTTGACCGGTGGCATTGGGGTTTC-GATGATCGGAGGGGCC-GACGGGGGTG
66 ATCGTCGGAGAACCTT-ACCGGTGGCATTGGGGTTCCAG-CGATCGGGGGGGCCGGA-GGGGGTG
*
19306926 TGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
128 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
19306991 ACCTCGAGCACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTACTAGCAAT
193 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTACTAGCCAT
*
19307056 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGATTTTTT
258 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGATTTCTT
* ** *
19307121 AGCTGAATTTTTTTGTGCATGCCGAAAAAAGTACAAGGATCACGTCTACCAAGTTTAGCGCCAAA
323 AGCTGAATTTTTTTATGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGCGCCAAA
*
19307186 AATCCTTTCAAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAG
388 AATCCTTTCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAG
*
19307251 AAAACGAGTCGTCTCGCCAAGAAACTTCACGCAAAGGCTTAAGGGACCATTGTATGAATTTACAA
453 AAAACGAGTCGTCTCGCCAAGAAACTTCACGCAAAGGCTTAAGGGACCATTGTATGAAATTACAA
*
19307316 GCCATAAAAATGGCATT-GACATGTAGAAATATGAAGATGTACCTAAACCC-CCTACCACCCTAT
518 GCCATAAAAATGGCATTGGA-ATGGAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTAT
* * * * *
19307379 CGATCTATGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCTCGCCCGCCCGCCCGCCCGCT
582 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACATAGTGCCCGCCCGCCCACCCGCCCGCT
* * * **
19307444 CATTTCGTTGGTTAGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCATATTGGACCGAGGG
647 CATTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* * * * * * * *
19307509 CTACAGCAGCAGGATTGCCAGCA-CGTATAGGGGGGCCCGGTCGATCCCCGGCTTGCGCATCTCG
712 CTACAGCAGCAGGATCGACAGCATC-CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCA
* *
19307573 CCACTCTAGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
776 CCACTCTAGCCGACTGAGCGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
*
19307638 TCCTAGTCTAAGCATACGAAGTTCATTCCAAGT-TAAAGATCGGACCAGACCGACGGTTACGGTA
841 TCCCAGTCTAAGCATACGAAGTTCATTCCAAGTCTAAA-ATCGGACCAGACCGACGGTTACGGTA
19307702 G
905 G
* *
19307703 CACATGCTGGGCTCGAGCTTGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATAGTCGGAGC
1 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATAGTCGGAGC
** * * *
19307768 ATCGTCGGAGAACCTTACTAGCGGCATTGGGGCTCCAGCGATCGGGGGGGCCCGGAGGGGGTGTA
66 ATCGTCGGAGAACCTTACCGGTGGCATTGGGGTTCCAGCGATCGGGGGGG-CCGGAGGGGGTGTG
* *
19307833 CGCACATGATGTGCAATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAAC
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * * *
19307898 CTTGAGAACTCACACCCCCCTAAAGAGCATTTGAGA-TTTACAGGTTTTCTGCCAGTAGCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTACTAGCCATTA
* *
19307962 AAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTA
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTA
19308011 TGAATTTACA
Statistics
Matches: 1084, Mismatches: 116, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
903 10 0.01
904 544 0.50
905 528 0.49
906 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (905 bp):
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATAGTCGGAGC
ATCGTCGGAGAACCTTACCGGTGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGAGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTACTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGATTTCTTAGC
TGAATTTTTTTATGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGCGCCAAAAAT
CCTTTCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAA
ACGAGTCGTCTCGCCAAGAAACTTCACGCAAAGGCTTAAGGGACCATTGTATGAAATTACAAGCC
ATAAAAATGGCATTGGAATGGAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCAACATAGTGCCCGCCCGCCCACCCGCCCGCTCATT
TCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTAC
AGCAGCAGGATCGACAGCATCCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCACT
CTAGCCGACTGAGCGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
GTCTAAGCATACGAAGTTCATTCCAAGTCTAAAATCGGACCAGACCGACGGTTACGGTAG
Found at i:19309251 original size:26 final size:26
Alignment explanation
Indices: 19309214--19309265 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19309204 GTTGACTTAC
*
19309214 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19309240 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19309266 CATCGGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19310008 original size:895 final size:887
Alignment explanation
Indices: 19308006--19310077 Score: 2963
Period size: 893 Copynumber: 2.3 Consensus size: 887
19307996 TCACAAAATC
* *
19308006 TTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGTCTAAACC
1 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
19308071 CACCTACCACCCTATCGATCCATGATTGCGCATCCCGTCTCTCTGGC-CGATAAGGTGCCCGCCC
66 CACCTACCACCCTATCGATCCACGGTTGCGCATCCCGTCTCTCTGGCGCG-T-A-GTGCCCGCCC
* * * * * * * *
19308135 GTCCGATCATTTTGTCGGTTGGCTTAGGCATACGGAGTCCATTCCAAGTCTAAGATCGGACCGGA
128 GCCCGCTCATTTCGTCGGTTGGC-TAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGA
** * * * * *
19308200 CCAAGGGTTGCGGCAGCAAGATCGGGAGCACACAGAGGGGGACCCGATCGACCCCCGGCTTGCCC
192 CTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * * *
19308265 ATCCTGCCCCTCTGGCTGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
257 ATCCTGCCCCTCTGGC-GGCTGAGTGACCGCACGCTCGTTTCGTGAGTTGACTTACGCATACGAA
* * * * * *
19308330 ATTCATTCCCAGTCCAAGCATACGGAGTTCACTGCCAGTCTAAGATCGGATCGGACTGAGGGTTG
321 ATTCATTCCCAGTCCAAGCATACGAAGTTCACTCCCAGTCTAACATCGGACCAGACCGAGGGTTG
* *
19308395 TGGCAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCAC
386 TGGCAGCACATGCTGGACTCGAGCATATGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCAC
* *
19308460 CGGAACATCATCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGTG
451 CGGAACATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGTG
19308525 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCGCATCAA
516 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCGCATCAA
* *
19308590 ACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAT
581 ACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGATTTGCTCCCAATAGCCAT
* * *
19308655 TAACGTGTCTGAAATGGGGACACTCTTCTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT
646 TAAAGTGTCTAAAATGGGGACACTCTTCTCAAATGGTCACAAAATCTTGCACACTTTGAGTTTTT
* * * * *
19308720 AGCTGAATTTTTTGTGCATTCCAACAAAAATACAAAGATTACGTCTACCAAGTTTGGGGCCAAAA
711 AGCTGAATTTTTTATGCATGCCAAAAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAAAA
* *
19308785 CTCCTTCTAAAAAAATTTTAAAAAATTCTCAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGA
776 CTCCTTCCAAAAAAATTTTAAAAAATCCTCAACCGCAAAAAGTTTAAAAAATCATG-AAAATAGA
* * * *
19308850 AAAGGAGTCGTCTTGCCATGAAACTTTAGGTGAAGGATTAAGGGACCA
840 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCA
*
19308898 TTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
1 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
*
19308963 CACCTACCACCCTATCGATCCACAGGTTGCGCATCCCGTCTCTCTGGCCGCCATAGTGCCCGCCC
66 CACCTACCACCCTATCGATCCAC-GGTTGCGCATCCCGTCTCTCTGG-CG-CGTAGTGCCCGCCC
* * * * * * **
19309028 GCCCACTCTTTTCGTCGGTTGGATTAGTCATATGGAGTTCATTCCCAGTCCAAG-TTCAGACCAA
128 GCCCGCTCATTTCGTCGGTTGGCTAAG-CATATGGAGTTCATTCCCAGTCTAAGATT-GGACCGG
* ** * *
19309092 ACTGAGGGTTGTGATAGCAGGATCAGTAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCG
191 ACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * *
19309157 CATCCTGTCCCTCTGGTCGGCTGAGTGACTGCACGCTCGTTTCGTGAGTTGACTTACGCATACGG
256 CATCCTGCCCCTCTGG-CGGCTGAGTGACCGCACGCTCGTTTCGTGAGTTGACTTACGCATACGA
* * *
19309222 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAACATCGGACCAGACCGAGGGTT
320 AATTCATTCCCAGTCCAAGCATACGAAGTTCACTCCCAGTCTAACATCGGACCAGACCGAGGGTT
* *
19309287 GTGGCAGCACATGCTGGACTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCG
385 GTGGCAGCACATGCTGGACTCGAGCATATGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCA
* * *
19309352 CCGGAGCATCACCGGAGAACTTGATCGACGGCATTGGGGTTCCGACGATCA-GGGGGCCGGGGGG
450 CCGGAACATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-AGGGGGGCC---GGG
*
19309416 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-TCATATTGGCCCCCTATCCCT
511 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCAT-ATATTGGCCCCCTATCCCG
*
19309480 CATCAAACCTCGAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACA-ATTTAGCTCCCA
575 CATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGAATTTGAGATTTTACAGATTT-GCTCCCA
* * *
19309544 ATAGCCATTAAAGTGTCTAAAATGGGGA-ACTTTTTTCAAATGGTCACAAAATCTTGCGCACTTT
638 ATAGCCATTAAAGTGTCTAAAATGGGGACACTCTTCTCAAATGGTCACAAAATCTTGCACACTTT
* *
19309608 GAGTTTTTAGCTGATTTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTG
703 GAGTTTTTAGCTGA-ATTTTTTATGCATGCCAAAAAAAATACAAAGATCACATCTACCAAGTTTG
* *
19309673 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCATC-ACCGTAAAAAGTTTCAAAAATCAT
767 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC-TCAACCGCAAAAAGTTTAAAAAATCAT
*
19309737 G-AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
831 GAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCA
* * *
19309793 TTGTATGAATTTACAAGCCATAAAAATGGCATAGGCATCCAGAAATATGAAGATGTGCCTAAACA
1 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
19309858 CACCTACCACCCTATCGATCCACGGCTTGTGTATCCCGTCTCTCTGGCTGGCGTAGTGACCGCCC
66 CACCTACCACCCTATCGATCCACGG-TTGCGCATCCCGTCTCTCTGGC--GCGTAGTGCCCGCCC
19309923 GCCCGCTCATTTCGTCGGTTGGCTCAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGA
128 GCCCGCTCATTTCGTCGGTTGGCT-AAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGA
* * * * *
19309988 CTGAGGGTTGCGGCAGCAGGATCGGTAGAATGCAGAGGGGGACCCGGTCGATCCCCGTCTTACGC
192 CTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
*
19310053 ATCCTGCCCCTCTGGCCGACTGAGT
257 ATCCTGCCCCTCTGG-CGGCTGAGT
19310078 TTTTAGCTGA
Statistics
Matches: 1043, Mismatches: 116, Indels: 39
0.87 0.10 0.03
Matches are distributed among these distances:
892 87 0.08
893 350 0.34
894 7 0.01
895 295 0.28
896 146 0.14
897 156 0.15
898 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGTTGCGCATCCCGTCTCTCTGGCGCGTAGTGCCCGCCCGCC
CGCTCATTTCGTCGGTTGGCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGA
GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
TGCCCCTCTGGCGGCTGAGTGACCGCACGCTCGTTTCGTGAGTTGACTTACGCATACGAAATTCA
TTCCCAGTCCAAGCATACGAAGTTCACTCCCAGTCTAACATCGGACCAGACCGAGGGTTGTGGCA
GCACATGCTGGACTCGAGCATATGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCACCGGAA
CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCGCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGATTTGCTCCCAATAGCCATTAAAG
TGTCTAAAATGGGGACACTCTTCTCAAATGGTCACAAAATCTTGCACACTTTGAGTTTTTAGCTG
AATTTTTTATGCATGCCAAAAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
TCCAAAAAAATTTTAAAAAATCCTCAACCGCAAAAAGTTTAAAAAATCATGAAAATAGAAAACGA
GTCATCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCA
Found at i:19310491 original size:468 final size:466
Alignment explanation
Indices: 19309607--19310537 Score: 1393
Period size: 468 Copynumber: 2.0 Consensus size: 466
19309597 TTGCGCACTT
* *
19309607 TGAGTTTTTAGCTGATTTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTT
1 TGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTT
* ** * **
19309672 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCATCACCGTAAAAAGTTTCAAAAATCAT
66 GGGGACAAAACTAATTCCAAAAAAATTTTAAAAAATCCATAACCACAAAAAGTTTCAAAAATCAT
19309737 GAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
131 GAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
19309802 TTTACAAGCCATAAAAATGGCATAGGCATCCAGAAATATGAAGATGTGCCTAAACACACCTACCA
196 TTTACAAGCCATAAAAATGGCATAGGCATCCAGAAATATCAAGATGTGCCTAAACACACCTACCA
* * *
19309867 CCCTATCGATCCACGGCTTGTGTATCCCGTCTCTCTGGCTGGCGTAGTGACCGCCCGCCCGCTCA
261 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGACCACCCGCCCGCTCA
* ***
19309932 TTTCGTCGGTTGGCTCAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTT
326 TTTAGTCGGTTGGCTCAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTT
* * * *
19309997 GCGGCAGCAGGATCGGTAGAATGCAGAGGGGGACCCGGTCGATCCCCGTCTTACGCATCCTGCCC
391 GCAGCAACAGGATCGGCAGAATGCAGAGGGGGACCCGGTCGATCCCCGTCTTACGCATCCCGCCC
19310062 CTCTGGCCGAC
456 CTCTGGCCGAC
* * *
19310073 TGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
1 TGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTT
* *
19310138 GGGGAGAAAACTAATTCCGAAAAAATTTTAAAAAATCTCA-AACCACAAAAAGTTTTC-AAAATC
66 GGGGACAAAACTAATTCCAAAAAAATTTTAAAAAATC-CATAACCACAAAAAG-TTTCAAAAATC
* *
19310201 GTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
129 ATG--AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
19310266 TGAATTTACAAGCCATAAAAATGGCATTGGCA-CGTAGAAATATCAAGATGTGCTTAAACCCACC
192 TGAATTTACAAGCCATAAAAATGGCATAGGCATC-CAGAAATATCAAGATGTGCCTAAACACACC
* * *
19310330 TACCACCCTATCGATCCGCGGCTTGCGCATCCCGTCTCTCTGGCCT-GCGTAGTGCCCACCCGTC
256 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CTGGCGTAGTGACCACCCGCC
** * *
19310394 CGCTTGTTTAGTCGGTTGGCTCATGCATATGGAGTTCATTCCTAGTCTAAGATCAAACCGGACTG
320 CGCTCATTTAGTCGGTTGGCTCAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTG
** * *
19310459 AGGGTTGCAGCAACAGGATTTGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGTCTTGCGCATC
385 AGGGTTGCAGCAACAGGATCGGCAGAATGCAGAGGGGGACCCGGTCGATCCCCGTCTTACGCATC
*
19310524 CCGCCCGTCTGGCC
450 CCGCCCCTCTGGCC
19310538 AGCTGAGAGC
Statistics
Matches: 416, Mismatches: 43, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
466 109 0.26
467 7 0.02
468 298 0.72
469 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (466 bp):
TGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTT
GGGGACAAAACTAATTCCAAAAAAATTTTAAAAAATCCATAACCACAAAAAGTTTCAAAAATCAT
GAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATAGGCATCCAGAAATATCAAGATGTGCCTAAACACACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGACCACCCGCCCGCTCA
TTTAGTCGGTTGGCTCAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTT
GCAGCAACAGGATCGGCAGAATGCAGAGGGGGACCCGGTCGATCCCCGTCTTACGCATCCCGCCC
CTCTGGCCGAC
Found at i:19310627 original size:26 final size:26
Alignment explanation
Indices: 19310579--19310632 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
19310569 TGACTTAGGG
* *
19310579 ATACGGAGTTCATTCTCAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
*
19310605 ATACGGAGTTCATTCCCAATCTAGGC
1 ATACGGAGTTCATTCCCAATCTAAGC
19310631 AT
1 AT
19310633 TCAGACCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:19311509 original size:26 final size:26
Alignment explanation
Indices: 19311473--19311525 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19311463 GTTGACTTAG
19311473 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19311499 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19311525 G
1 G
19311526 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19312394 original size:26 final size:26
Alignment explanation
Indices: 19312365--19312417 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19312355 GTTGACTTAG
*
19312365 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19312391 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19312417 G
1 G
19312418 ATTAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19312945 original size:905 final size:899
Alignment explanation
Indices: 19310074--19313574 Score: 4426
Period size: 905 Copynumber: 3.9 Consensus size: 899
19310064 CTGGCCGACT
*
19310074 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
1 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-
* ** * * * * *
19310139 GGGA-GAAAACTAATTCCGAAAAAATTTTAAAAAATCTCAAACCACAAAAAGTTTTCAAAATCGT
65 GGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCAT
* * * *
19310203 GAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
130 AAAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** * *
19310268 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATCAAGATGTGCTTAAACCCACCTAC
195 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
19310333 CACCCTATCGATCCGCGGCTTGCGCATCCCGTCTCTCTGGCCTG-CGTAGT----GCCCACCCGT
260 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCGC
* * * * * * * *
19310393 CCGCTTGTTTAGTCGGTTGGCTCATGCATATGGAGTTCATTCCTAGTCTAAGATCAAACCGGACT
324 CCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCAGACCGGACC
* * ** *** * * *
19310458 GAGGGTTGCAGCAACAGGATTTGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGTCTTGCGCAT
389 GAGGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCACAT
* * * * *
19310523 CCCGCCCGTCTGGCCAGCTGAGAGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGGATACGGAGT
454 CCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
19310588 TCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAATCTAGGCATTCAGACCGGACCAAGGGTTG
519 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-A-T-AGACCGGACCAAGGGTTG
* * *
19310653 CGGTAGCACATGCTGGGCTCGAGCAAGTGCTGGT-TTCACATTTTTCTTCACTGGGGCACCATCG
581 CGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTCACATTTTTCTTCACCGGGGCACCATCG
* * * * * *
19310717 TCGGAGCATCGTTGGAGAACCTGACCGGCGGCATTAGGGTTCCGATGATCGGGGGGGCCGGGGGG
646 TCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGG
* * * * * *
19310782 TATGCCCGCATGATGTGCAATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACC
711 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19310847 AAACCTTGAGAAGTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCC
776 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19310912 ATTAAAGTGTCTGAAATGGGGA-CATTATTTTCGAATGGTCACAAAA-CGTTGTACACTTC
841 ATTAAAGTGTCTGAAATGGGGACCCTT-TTTTCAAATGGTCACAAAATC-TTGTACACTTC
* * *
19310971 CATTTTTTAGCTG-ATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
1 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* ** * * *
19311035 GGGCCAAAACTTTTTCCGAAAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTTAAAAATCATG
66 GGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATA
* * * * *
19311100 AAAAATAAAAAACAAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATG-
131 AAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * * * *
19311164 A---A-AA---ATATAAATGCCTTTGGCTCATAGAAATGTGAAGATATGCCTAAACCCACCTACC
196 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
19311222 ACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCTCGCCC
261 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCC
* * * * * * *
19311287 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATTAGACTGAA
322 GCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCAGACCGGA
* * ** * *
19311352 CTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCTATCCCCGACTTGCAC
387 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCAC
* * ** *
19311417 ATCCTGCCCCTCTGTCCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
452 ATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
19311482 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTG
517 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAG-ACCGGACCAAGGGTTG
* **
19311547 CGGTAGCTCATGCTGGGCTCGAGCATGTGCTGGTG-TCACATTTTTCTTCGTCGGGGCACCA---
581 CGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTCACATTTTTCTTCACCGGGGCACCATCG
* * * * *
19311608 TC---G--T--C-GGAGAACTTGACCGACGACATTTGGG-TTCTGGCGATCGGGGGGGCCGGGGG
646 TCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTTC-GACGATCGAGGGGGCCGGGGG
19311664 GTGTGCGCACAT-AGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
710 GTGTGCGCACATGA-TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
19311728 TCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
774 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
19311793 CCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
839 CCATTAAAGTGTCTGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
19311854 GAATTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
1 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * **
19311919 GGGCCAAAAATCCTTCC-AAAAATTTTTTCAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTGT
66 GGACCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCAT
*
19311983 AAAAAATAGAAAATGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
130 AAAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
19312048 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
195 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
19312113 CACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCTCGCCCGCC
260 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* *
19312178 CGCCTGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCCGACCAG
325 CG-CT--T-GTTTTGTCGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCAGACCGG
* * *
19312243 ACCGAGGGTTGCGGCAGCAGGATCGGTAGTACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCA
386 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCA
* * * *
19312308 TATCCCGCCCCTCTGGCCGGTTAAGCTCCCGTACGCTCGTTTCCTGGGTTGACTTAGGCATACGG
451 CATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
19312373 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTAGATCAGATCGAGGGTT
516 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TAGACCGGACCAAGGGTT
* * * * *
19312438 GCGGTAGCACATACTGGGCTC-AGGCATCTGCTGGTGCT-ATATTTTTCTTCGCCAGGGCACCAT
580 GCGGTAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCTCACATTTTTCTTCACCGGGGCACCAT
*
19312501 CGTCGGAGCATCGCTGGATAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGAGG
644 CGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCC--GG
19312566 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
707 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * **
19312631 CATCAAACCTCGAGAACTCCCACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTATCAGT
772 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
19312696 AGCCATTAACGTGTCTGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCCTGTACACTTT
837 AGCCATTAAAGTGTCTGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
19312759 GAGTTTTTAGGTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
1 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* ** *
19312824 GGACCAAAACCCCTTCC-AAAATTTTTTTGAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCAT
66 GGACCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCAT
19312888 AAAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
130 AAAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
19312953 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCATAAACCCACCTAC
195 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* **
19313018 CACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCAACCCGCCCGCC
260 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* *
19313083 CGCTTGTTTTGTCGGTTGGCTTAGGCATACGAAGTGCATTCCCAGTCTAAGATCGGACCGGACCG
325 CGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * * * * * *
19313148 AGGGCTGCGGCAGCAGGATTGGTAGCACATAGAGAGGGACCCGCCCAATCCTCAGCTTGCGCATC
390 AGGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATC
* *
19313213 CCGCCCCTCTGGCTGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
455 CCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
19313278 CATTCCCAG--T---C-TA---AG---A-T--C---C-------GACCGGACCAAGGGTTACTGC
520 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGACCGGACCAAGGGTTGCGGT
** * * ** * ** *
19313318 AGCACATGCTACGATCGGGCATGTGCTGGTG-TCGTATTTTTTTTCATTGGGGCACCATCGCCGG
585 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCTCACATTTTTCTTCACCGGGGCACCATCGTCGG
* * * ***
19313382 AGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTTCGACGATCGACAAGGCCGAGGGGGTGT
650 AGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCG-GGGGGTGT
* * *
19313447 GCGCACATGATGTGCGATGGGTGATGGTACTTGGCTCTTATATTGGCCCCCTATCGCTCATCAAA
714 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * * *
19313512 CCTCGAGATCTCACAACCACTTAAATAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCA
779 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
19313575 AAACACCTTC
Statistics
Matches: 2290, Mismatches: 262, Indels: 127
0.85 0.10 0.05
Matches are distributed among these distances:
873 1 0.00
874 126 0.06
875 110 0.05
882 3 0.00
883 226 0.10
884 157 0.07
885 1 0.00
886 2 0.00
887 1 0.00
888 109 0.05
889 5 0.00
890 2 0.00
891 5 0.00
892 362 0.16
893 4 0.00
894 72 0.03
895 9 0.00
896 370 0.16
897 11 0.00
898 1 0.00
899 1 0.00
900 1 0.00
901 181 0.08
902 2 0.00
903 36 0.02
904 5 0.00
905 486 0.21
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATA
AAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
GCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCAGACCGGACCGA
GGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCC
CGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGACCGGACCAAGGGTTGCGGTA
GCACATGCTGGGCTCGAGCATGTGCTGGTGCTCACATTTTTCTTCACCGGGGCACCATCGTCGGA
GCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
Found at i:19314940 original size:26 final size:26
Alignment explanation
Indices: 19314910--19314961 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19314900 TTGACTTAGT
* *
19314910 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
19314936 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
19314962 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:19315491 original size:883 final size:883
Alignment explanation
Indices: 19313571--19317158 Score: 4132
Period size: 883 Copynumber: 4.0 Consensus size: 883
19313561 GCTGCCAGTA
* * * * *
19313571 GCCAAAACACCTTCCGAAAAAATTTAAAAAAATCACGAACAGCAAAATGTTTCAAAAATCGTGAA
1 GCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAA
** *
19313636 AAATAGAAAACGAGTCGTCTTGATATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
65 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
19313701 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
130 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
19313766 CCTATCGATCCACGGCTTGCGCATACCGCCTCTCTGGCCGGCGTAGTGCCTGCCTACCCGCCCGC
195 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C--CC-GCCCGCCCG-
* * ** *
19313831 CTACTCATTTCGTCGGTTGGCTTAGGCATACCAAGTTCATTCCCAGTCTAAGATCAGACCAAATC
255 --A-TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACC
* * * * ** * * * *
19313896 GAGGGTTGCAGCAGCAAGATC-GATAGCATACAGAGGAGGA-ATAGGTCGATCCCCGTCTTGCGC
317 AAGGGTTACAGCAGCAGGATCAG-CAGCACGCAGAGGGGGACCT-GATCGATCCCCGGCTTGCGC
** ** ** * * * *
19313959 ATCTTGCCCCTCTGGCCGGCTGAGCGCTAGCACGCTCATTTCGTGGGTTGACTTACGCTTATGGA
380 ATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGA
* *
19314024 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTA
445 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
*** * * ** *
19314089 CGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGAGGCACCATCGC
510 CAACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
* * * *
19314154 CGGAGCATCGCCGGAGAACATGACCGTCGGCATTGGGATTCCAACGATCGAGGGGGCCGACGGGG
575 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTT-C--CGA-CGA-----TCG-CGGGG
*
19314219 GTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
630 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
19314284 CAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGC
695 CAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
19314349 CATAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTAAAAAAATCTTGAACACTTCGAGTTT
760 CATAAAGTGTCTGAAATT-GGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
19314414 TTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACATCTAACAAGTTTGGG
823 TTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG
* * * * ** *
19314475 GCGAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACTGTAAAATGTTTTGAAAATC-TTAA
1 GCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAA
19314539 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
65 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
19314604 TTACAAGCCATAAAAATGGCATTGGCATGTAGATATATGAAGATGTGCCTAAACCCACCTACCAC
130 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
19314669 TCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGATCGT
195 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGATCGT
* ** * * * *
19314734 TTCATTGGTTGGCTTAGAAATACGGAGTTCATTCCCAGTCGAAGATCAGACTAGACCAAGTGTTA
260 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTA
** * * * * *
19314799 TGGTAG-TGGATCAGTAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTACGCATCCTGCCCC
325 CAGCAGCAGGATCAGCAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCC
* ** * *
19314863 TCTGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGTCATACGGAGTTCATTCTC
390 TCTGGCCAACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
*
19314928 AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCACA
455 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCACA
* * *
19314993 TGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCTCCAGAGCATCG
520 TGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG
* * * *
19315058 CCAGAGAACCTGATCGACAGCATTGGGGTTCCGACGATCG-GGGGGTGTGCGCACATGATTTGCG
585 CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGCGGGGGTGTGCGCACATGATGTGCG
* *
19315122 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTTGAGAACTCACAC
650 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACAC
* * *
19315187 CCCCTTAAAAAGCATTTGACATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGT
715 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TAAAGTGTCTGAAAT-T
* **
19315252 GGACAC-TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGGGC
778 GGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
*
19315316 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
843 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG
** * * * * **
19315357 GCCAAAACTCCTTCCACAAAAAGCTTGAAAAATCCCGAACCGTAAAAAGTTTGAAAAATAATGAA
1 GCCAAAACTCCTTCCA-AAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAA
19315422 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
65 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
19315487 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
130 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
19315552 CCTATCGATCCATGGCTTGCGCATCCCGTCTTTCTGGCCAACGTAGTGCCTGCCCGCCCGTCTGC
195 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCG-C--C
* * *
19315617 TCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACT
253 -CGATCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACC
* * * * * * *
19315682 GAGGGTTACAGTAGCAGGATCAACAGCACGCAGAGGGGGACCCGACCTATCCCCAGCTTGCGCAT
317 AAGGGTTACAGCAGCAGGATCAGCAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCAT
* * * * * *
19315747 CCCGCCCCTCTGGCCAACTGAGCCCCCGTACGCTCGTTT-AGTTGGCTGACTTAGGCATACAGAG
382 CCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCATTTCA-TGGGTTGACTTAGGCATACGGAG
* * * * * * *
19315811 TTCATTCCCAGCCTAAGCATATGAAGTTCATTCCCAATCTAAGATTGGACTAGACCGAGGCTTGC
446 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
** * * * *
19315876 GCCAGAACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACC
511 AACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * *
19315941 GTG-GCATCACCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATCGGGGGGCCCAGGGGGT
576 G-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-----G--C-GGGGGT
* * * *
19316005 GTGCGCACATAATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCGTCATCA
632 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
19316070 AACCTCGAGAACTCACACGCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-
697 AACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
19316134 --AA-----T-AAA---G-------------T-G--------TCTTGTACACTTCGAGTTTTTGG
762 TAAAGTGTCTGAAATTGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
19316166 CTAAATTTTTTT-TCGCATGCCAACAAAAATAGAAGGATCACATCTTCCAAGTTTGGG
827 CTGAATTTTTTTAT-GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG
* * *
19316223 TCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCGTGAA
1 GCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAA
* * *
19316288 AAATAGAAAATGAGTCGTGTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
65 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* ** *
19316353 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGCACCTAAACCAACCTACCAC
130 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
19316418 CCTATCGATCCACGGCTTGCGCATCCTGTCTCTTTGGCC-AGTGTAGTGCCCGCCCG--C--TCG
195 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGATCG
* * ** * **
19316478 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACCAAGGGTT
259 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTT
*** ** * * * *
19316543 GTGGCAGCAGGATTGGCAGCAAGCAGAAGGGGACC-CAGTCGATCCCCGGCTTGTGCATCCCGCC
324 ACAGCAGCAGGATCAGCAGCACGCAGAGGGGGACCTGA-TCGATCCCCGGCTTGCGCATCCCGCC
** * * * * * *
19316607 TTTCTGGCCAATTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTC
388 CCTCTGGCCAACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * * *
19316672 CCAATCTAAGCATACGGAGTTCATTCCCAGTCTAACATCGGACCAGACCAAGGGTTGTGGTAGCA
453 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG-T-T-GCA--A
* * * *
19316737 CATGCTAGGC-TCGAGCTGGGCTCGAGCTTGTGTTGGTGCCGCATATTTCTTTCCT-GGGGCACC
513 CA-GC-A--CAT---GCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACC
* * * * *
19316800 ATCGCTGGAGTATCGTCGGAGAACCTAACCTG-CGGTATTGGGGTTCCGACGATCGGGGGGGCCG
570 ATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACGATC------G-C-
*
19316864 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
626 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
19316929 TCATCAAACCTAGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
691 TCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
19316994 TAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
756 TAGCC-ATAAAGTGTCTGAAAT-TGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
19317059 ATTTTTTAGCTG-ATGTTTTTCATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
818 AGTTTTTAGCTGAAT-TTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTG
19317123 GG
882 GG
* *
19317125 ACCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
1 GCCAAAACTCC-TTCCAAAAAATTTTAAAAAATC
19317159 TTGAACCCGG
Statistics
Matches: 2307, Mismatches: 291, Indels: 174
0.83 0.10 0.06
Matches are distributed among these distances:
853 1 0.00
854 202 0.09
855 1 0.00
856 2 0.00
857 1 0.00
859 2 0.00
860 1 0.00
861 1 0.00
862 11 0.00
863 1 0.00
864 2 0.00
865 209 0.09
866 293 0.13
867 4 0.00
869 2 0.00
874 2 0.00
875 4 0.00
879 1 0.00
881 1 0.00
882 139 0.06
883 299 0.13
884 21 0.01
885 4 0.00
887 11 0.00
888 1 0.00
890 4 0.00
891 72 0.03
892 247 0.11
893 3 0.00
894 243 0.11
895 60 0.03
896 1 0.00
897 3 0.00
899 8 0.00
900 2 0.00
901 125 0.05
902 101 0.04
903 171 0.07
904 51 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (883 bp):
GCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGATCGTT
TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTAC
AGCAGCAGGATCAGCAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCCT
CTGGCCAACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCACAT
GCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGCGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATAAAGTGTCTGAAATTGGA
CACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
CCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG
Found at i:19316346 original size:866 final size:852
Alignment explanation
Indices: 19314395--19317010 Score: 3057
Period size: 866 Copynumber: 3.0 Consensus size: 852
19314385 GGTAAAAAAA
*
19314395 TCTTGAACACTTCGAGTTTTTAGCTGAA-TTTTTTTCTGCATGCCAACAAAAATACAAGGATCAC
1 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTC-GCATGCCAACAAAAATACAAGGATCAC
* * *
19314459 ATCTAACAAGTTTGGGGCGAAAACT-CTTTCCGAAAAAATTTTAAAAAATCCCGAACTGTAAAAT
65 ATCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCCCGAACTGTAAAAA
** *
19314523 GTTTTGAAAATCTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
129 GTTTCAAAAATCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
19314588 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGATATATGAAGATGTGCC
194 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
* * *
19314653 TAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA--GT
259 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGG-CCACGTAGTGT
* * ** *
19314716 GCCCGCCCGCCCGATCGTTTCATTGGTTGGCTTAGAAATACGGAGTTCATTCCCAGTCGAAGATC
323 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
19314781 AGACTAGACCAAGTGTTATGGTAG-TGGATCAGTAGCACGCAGAGGGGGACCTGATCGATCCCCG
388 AGACCAGACCAAGGGTTATGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCG
* * * ** *
19314845 GCTTACGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCA-TGGGTTGACTTAG
453 GCTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTT-AGTGGGTTGACTTAG
* * *
19314909 TCATACGGAGTTCATTCTCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
517 GCATAC-GAGTTCATTCCCAGTCTAAGCATAGA-AGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * *
19314974 CGAGGGTTGCAACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
580 CGAGGGTTGCGACAGAACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
* * * * *
19315039 CACCATCTCCAGAGCATCGCCAGAGAACCTGATCGACAGCATTGGGGTTCCGACGATC-----G-
645 CACCATCACC-GGGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
* *
19315098 -GGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCC
709 CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
19315162 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGACATTTTACAGGTTTGCTTCCA
774 CTCATCAAACCTAGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
19315227 GTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTCAAATGG
838 GTAGCC----AA-----T-AAA----G------------T-G
* **
19315269 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATACAA
1 --------TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTCGCATGCCAACAAAAATACAA
* * ** * *
19315334 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCACAAAAAGCTTGAAAAATCCCGAACC
58 GGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGA-AAAAATTTTAAAAAATCCCGAACT
* *
19315398 GTAAAAAGTTTGAAAAATAATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
122 GTAAAAAGTTTCAAAAAT-CTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
19315463 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
186 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
*
19315528 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTTTCTGGCCAA
251 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCC-A
*
19315593 CGTAGTGCCTGCCCGCCCGTCTGCTCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATT
315 CGTAGTG--TGCCCGCCCG-C--C-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* ** ** *
19315658 CCCAGTCTAAGATCAGACCAAACTGAGGGTTACAGTAGCAGGATCAACAGCACGCAGAGGGGGAC
374 CCCAGTCTAAGATCAGACCAGACCAAGGGTTATGGTAGCAGGATCAGCAGCACGCAGAGGGGGAC
* * * * *
19315723 CCGACCTATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAACTGAGCCCCCGTACGCTCGTTTAG
439 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTAG
* * * *
19315788 TTGGCTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGCATATGAAGTTCATTCCCAATCTAA
504 TGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATA-GAAGTTCATTCCCAGTCTAA
* * * * *
19315853 GATTGGACTAGACCGAGGCTTGCGCCAGAACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
567 GATCGGACCAGACCGAGGGTTGCGACAGAACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
* *
19315918 TTCTTCATCGGGGCACCATCACCGTGGCATCACCGGAGAACCTGACCGACGGCATTGAGGTTCCG
632 TTCTTCATCGGGGCACCATCACCG-GGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * *
19315983 GCGATCGGGGGGCCCAGGGGGTGTGCGCACATAATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
696 ACGATCGGGGGG-CC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * *
19316048 ATTGGCCCCGTATCCGTCATCAAACCTCGAGAACTCACACGCCCTTCAAGAGCATTTGAGATTTT
759 ATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTT
19316113 ACAGGTTTGCTGCCAGTAGCCAATAAAGTG
823 ACAGGTTTGCTGCCAGTAGCCAATAAAGTG
* * *
19316143 TCTTGTACACTTCGAGTTTTTGGCTAAATTTTTTTTCGCATGCCAACAAAAATAGAAGGATCACA
1 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTCGCATGCCAACAAAAATACAAGGATCACA
* * * *
19316208 TCTTCCAAGTTTGGGTCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGT
66 TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGT
* * *
19316273 TTCAAAAATCGTGAAAAATAGAAAATGAGTCGTGTTGCTATGAAACTTCACGTGAAGGCTTAAGG
131 TTCAAAAATC-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
**
19316338 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGCACCT
195 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
* *
19316403 AAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTT-TGGCCA-GT-GTAGT
260 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT-TTCTGGCCACGTAGT-GT
* * *
19316465 ----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATT
323 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * ** * *
19316526 GGATCGGACCAAGGGTTGTGGCAGCAGGATTGGCAGCAAGCAGAAGGGGACCC-AGTCGATCCCC
388 AGACCAGACCAAGGGTTATGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGA-TCGATCCCC
* ** * * * *
19316590 GGCTTGTGCATCCCGCCTTTCTGGCCAATTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
452 GGCTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTAGTGGGTTGACTTAG
* * *
19316655 GCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAACATCGGACCAGAC
517 GCATACG-AGTTCATTCCCAGTCTAAGCATA-GAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * * *
19316720 CAAGGGTTGTGGTAGCACATGCTAGGCTCGAGCTGGGCTCGAGCTTGTGTTGGTGCCGCATATTT
580 CGAGGGTTG-CG-A-CAGA-AC-A---T---GCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
* * * * * * *
19316785 CTTTCCT-GGGGCACCATCGCTGGAGTATCGTCGGAGAACCTAACCTG-CGGTATTGGGGTTCCG
634 C-TTCATCGGGGCACCATCACCGG-GCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCG
*
19316848 ACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
696 ACGATC-GGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
19316913 ATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTT
759 ATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTT
**
19316978 ACAGGTTTGCTGCCAGTAGCCGTTAAAGTG
823 ACAGGTTTGCTGCCAGTAGCCAATAAAGTG
19317008 TCT
1 TCT
19317011 GAAATGGGGA
Statistics
Matches: 1499, Mismatches: 186, Indels: 115
0.83 0.10 0.06
Matches are distributed among these distances:
853 2 0.00
854 210 0.14
855 2 0.00
857 4 0.00
858 6 0.00
859 1 0.00
862 2 0.00
863 2 0.00
864 7 0.00
865 217 0.14
866 289 0.19
867 6 0.00
874 1 0.00
875 1 0.00
881 2 0.00
882 113 0.08
883 176 0.12
885 1 0.00
887 11 0.01
888 1 0.00
890 1 0.00
891 70 0.05
892 247 0.16
893 1 0.00
897 3 0.00
900 1 0.00
901 122 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (852 bp):
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTCGCATGCCAACAAAAATACAAGGATCACA
TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGT
TTCAAAAATCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCACGTAGTGTGCC
CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCAGACCAAGGGTTATGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCT
TGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCAT
ACGAGTTCATTCCCAGTCTAAGCATAGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
TTGCGACAGAACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT
CACCGGGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTAGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAA
TAAAGTG
Found at i:19316692 original size:26 final size:26
Alignment explanation
Indices: 19316655--19316713 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
19316645 GTTGACTTAG
*
19316655 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19316681 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19316707 -CAT-CGGA
1 GCATACGGA
19316714 CCAGACCAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19318140 original size:26 final size:26
Alignment explanation
Indices: 19318110--19318162 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19318100 GTTGACTTAG
*
19318110 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19318136 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19318162 G
1 G
19318163 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19319039 original size:26 final size:26
Alignment explanation
Indices: 19319009--19319061 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19318999 GTTGACTTAG
19319009 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
* * *
19319035 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
19319061 G
1 G
19319062 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:19319157 original size:899 final size:898
Alignment explanation
Indices: 19317164--19320606 Score: 4713
Period size: 903 Copynumber: 3.8 Consensus size: 898
19317154 AAATCTTGAA
* * * * *
19317164 CCCGGCTTGCGCATCCCGCCCCTCTGTCCAGCTGAGCGCCCCCACGCTCGCTTCGTCGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * *
19317229 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAAT-CCTGATCTAAGATCAGATC
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACC
* * * * * **
19317293 AGACCGAGGGTTATGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC
130 AGACCAAAGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* * * * ** ** * *
19317358 GAGGCACCAT---CGTCG-A--ACCGAAGAACCTGGCCGGTGGTGTTGGGGTTCCGATGATCAGG
195 GGGGCACCATCGCCGTAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* * *
19317417 GGGGCCGGGGGGGTGTGCGCACATGATTTATGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCC
260 GGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
19317482 CCTATACCTCATCAAACCTCAA-AACTCACACTCCCTTAAAGAGCATTCGAGATTTTATAGGTTT
325 CCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
* *
19317546 GGTGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
390 GCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
19317611 ACACTTTGAG-TTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
455 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACC
* * *
19317675 AAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
519 AAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* **
19317740 AATCATGAAAAATAGAAAACGGGTCGTCTCACCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
583 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
19317805 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT------
648 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * *
19317864 GCC-ACCA---TATAGATCAACGGCTTGCGTATCCCATCTCTCTGGCCGGTGTAGTG--C-CC-G
713 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGCAGTGCCCGCCTG
* * *
19317921 CCCGTCCGTTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
778 CCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
19317986 AGACCGAGGGTTGTAGCAGCAGGATCGGTAACACGCAGAGGGGGACCCGGCCGATC
843 AGACCGAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATC
* * *
19318042 CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCGTTTCATGGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* *
19318107 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCA
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * ** *
19318172 GA-CAGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTCTTTGCT
131 GACCA-AAGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* *
19318236 GGGGCACCTTCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
195 GGGGCACCATCGCCGTAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* * * *
19318301 GGGGCCGTGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTAGTAATTGGCCCTTATATTGGCC
260 GGGGCCG-GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
19318366 CCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
324 CCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
* *
19318431 TACTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTG
389 TGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
19318496 TACACTTCGAGTTTTTAGCTGAAATTTTTTT-TGCATGCCAA-AAAAAAACAAGGAT-CGTATTA
454 TACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATACGT-CT-
* * * *
19318558 ACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAATCCCGAACTGCAAAAGGTTTCA
516 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* * *
19318623 AAAATCGTAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
581 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
**
19318688 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
646 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
19318753 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGCAGTGCCCGCC
711 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGCAGTGCCCGCC
* *
19318818 TGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGACTAAGATCAG
776 TGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
19318882 ACCGGACTGAGGGTTACGGTAGCAGGATCGACGGCATGCAGAGGGGGACCCGGTCGATC
840 ACCAGACCGAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATC
* * * *
19318941 CCCGGCTTGCGTATCCCGCCCCTCTGGGCAGCTGAGCGGCCGTACGCTCGTTTCATGGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * * *
19319006 TAGGCATACGGACTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGATCG
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * *
19319071 GATCAAAGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
131 GACCAAAGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
* * * * *
19319136 GGGCACCATCGCCATAGCATCACCGGAGAACTTGACCGATGGCAATGGGGTTCCGGCGATCGGGG
196 GGGCACCATCGCCGTAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
* * *
19319201 GGGCCGGGGGGTTGTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCT
261 GGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
19319266 CTATCTCTCATCAAA-CTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTT
326 CTATCCCTCATCAAACCTT-AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
* * *
19319330 GCTGCGAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
390 GCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
19319395 ACACTTCTAGTTTTTAGCTGAA-TTTTTTGTGCATACCAACAAAAATACCAGGATCATGGCTACC
455 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACC
* * *
19319459 AAGTTTGGAGCCAAAAATCCTTCCAAAAAAATTGTAAAAAATCCCAAACCGCAAAAAGTTTCAAA
519 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT-TAAAAAATCCCGAACCGCAAAAAGTTTCAAA
** *
19319524 AATTGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
583 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
19319589 TGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAGGATGTGCCTAAACCC
648 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* **
19319654 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCTGACGTAGTGC-CCGCCC
713 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC---CG--GTGCAGTGCCC
* * *
19319718 GCCTGCCTGCTCGCTT-GTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCACAGTCTAAGAT
773 GCCTGCCCGCCCG-TTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * * * *** *
19319782 TGGACCAGACCGAGTGTTGCAGTAGCAAGAACGGCAGCACGTAGAGCATGACCCGATCGATC
837 CGGACCAGACCGAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATC
* * * * * * *
19319844 CCCGGCATGCGCATCCCGTCCTTTTGGCCGGCTGTGCGCCCGTACGCTCGTTTCATGGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* *
19319909 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCA
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * *
19319974 GACCGAAGGTTACGACAACACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
131 GACCAAAGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
* * *
19320039 GGGCACCATCGTCGTAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGG
196 GGGCACCATCGCCGTAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
* * * *
19320104 GGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGGTACTTTGCCCTTATATTGGCCCC
261 GGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* ** * * *
19320169 TTATCCCTCATCAAACCTGGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG
326 CTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
* *
19320234 CTGCCAGTAG-ACATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGA
391 CTGCCAGTAGCA-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
19320298 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACC
455 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACC
** * * **
19320363 AAGTTTATGGCCAAAACTCCTTCCGAAAAAATATTAAAAAATCCTGAACCATAAAAAGTTTCAAA
519 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT-TTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* * *
19320428 AATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTCAAGGCTTAAGGGACCAT
583 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
19320493 TGTATGAATTTACAACCCATAAAAATGGCTTTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
648 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
19320558 ACCTACCACCCTATCGATCCAC-GATTGTGCATCCCGTCTCTCTGGCCGG
713 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
19320607 CGTAATGCCC
Statistics
Matches: 2261, Mismatches: 257, Indels: 74
0.87 0.10 0.03
Matches are distributed among these distances:
877 1 0.00
878 173 0.08
879 3 0.00
881 3 0.00
882 1 0.00
884 45 0.02
885 223 0.10
886 148 0.07
887 18 0.01
888 9 0.00
891 2 0.00
892 4 0.00
895 41 0.02
896 6 0.00
897 15 0.01
898 237 0.10
899 532 0.24
900 5 0.00
902 2 0.00
903 551 0.24
904 241 0.11
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
CCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCAAAGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
GGGCACCATCGCCGTAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
GGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
CTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGCAGTGCCCGCCTGCCC
GCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGA
CCGAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATC
Found at i:19319942 original size:26 final size:26
Alignment explanation
Indices: 19319912--19319964 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19319902 GTTGACTTAG
19319912 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19319938 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19319964 G
1 G
19319965 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19321490 original size:26 final size:26
Alignment explanation
Indices: 19321461--19321512 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19321451 TTGACTTAGC
19321461 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19321487 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19321513 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:19323221 original size:26 final size:26
Alignment explanation
Indices: 19323191--19323243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19323181 GTTGACTTAG
*
19323191 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19323217 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19323243 G
1 G
19323244 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19324097 original size:26 final size:26
Alignment explanation
Indices: 19324068--19324118 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19324058 CTAACTTAGG
* *
19324068 CATACGGAGTTTATTCCCAGTCTAAT
1 CATACGAAGTTCATTCCCAGTCTAAT
19324094 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
19324119 AATTAGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAT
Found at i:19324455 original size:26 final size:26
Alignment explanation
Indices: 19324424--19324473 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19324414 GACTTAGGCG
*
19324424 TACGGAGTTCATTTCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
19324450 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19324474 ATCGGATCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19325128 original size:26 final size:26
Alignment explanation
Indices: 19325092--19325144 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19325082 GTTGACTTAG
*
19325092 GCATACAGAGTTCTTTCCTGATCTAA
1 GCATACAGAGTTCATTCCTGATCTAA
* * *
19325118 GCATACGGAGTTCATTCTTGGTCTAA
1 GCATACAGAGTTCATTCCTGATCTAA
19325144 G
1 G
19325145 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTGATCTAA
Found at i:19325998 original size:26 final size:26
Alignment explanation
Indices: 19325962--19326012 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19325952 CTGACTTAGG
*
19325962 CATACGGAGTTTATTCCCAATCTAAT
1 CATACGGAGTTCATTCCCAATCTAAT
*
19325988 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAATCTAA
19326013 GATCAGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAT
Found at i:19328696 original size:26 final size:26
Alignment explanation
Indices: 19328660--19328712 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19328650 GTTGGCTTAG
*
19328660 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
19328686 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19328712 G
1 G
19328713 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19333134 original size:26 final size:26
Alignment explanation
Indices: 19333098--19333150 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19333088 GTTAACGTAG
19333098 GCATACGGAGTTCATTCTC-AGTCTAA
1 GCATACGGAGTTCATTC-CAAGTCTAA
*
19333124 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19333150 G
1 G
19333151 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Done.