Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 110 of 195
Found at i:19333831 original size:882 final size:886
Alignment explanation
Indices: 19328580--19334987 Score: 7233
Period size: 882 Copynumber: 7.2 Consensus size: 886
19328570 CCCACCTACC
* * * * * * * *
19328580 ACCCTATCTATCCACGGCTTGCGCATCCCGTCTCTCT-GACCG-GTGTAGTGCCCGCACGCTTGT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAG-CCGACTG-AGCGCCCGCACGCTCGT
* *
19328643 TTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA-
64 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAAG
* * ** * *
19328707 TCTAAGATCAGACCGGACCGAGGGTTATGGCAGCCCATGCTGGGCTCGGGCATGTGCTGGTGCCG
128 TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
* * * * *
19328772 CATTTTTCTTCGTCGGTGCAACATC-ATCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGG
193 CATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
* * *
19328836 GTTTCGACGATTGGGGGGGCCGGGGGGGTGTTCGCACATGATTTGCGATGGGTGCTGGTACTTGG
257 GTTTCGACGA-TCGGGGGGCCGGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
19328901 CCCTTATATTGGCCCCCTAT-CCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
321 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * *
19328965 AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATGGGGACACTCTTTTCAACTG
386 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * *
19329030 GTCACTAAATCTTGTACACTTCTAGTTTTTAGCTTAATTTTTTTGTGCAT-CGGAAAAAAAATAC
451 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC-CAACAAAAATAC
* * * * *
19329094 AAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAGAAATCTCGAAA
515 AAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTG-AA
** * * * * * * *
19329159 CCGTAAAAAGTTTCAAAAATCATGAGAAATAGAAAACAAGTTGTCTTGCGAAGAAACTTCACATG
579 CCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
19329224 AAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGCATT-GCATGCAGAAATATG
644 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* *
19329288 AAGATGTGCCAAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
709 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG--
* *
19329353 GACGTAGTACCCGCCCGCCTGCCTGCTCATTCCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
772 G-CGT-G----CG-CCG-C-G-C-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * ** * *
19329418 CAGTCTAAGAACAGACCAAATCGAGGGTTGTGGCAGTAGGATCGATAAAACGTGGAGGCGG
826 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGG
* ** * * * *
19329479 ACCTGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTT
* * *
19329544 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCT
* * * *
19329609 AAGATCGGACCAGATCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCACAT
131 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
*
19329674 TTTTCTTTG-CTGGGG---CA---C-----CATCGCCGGAGAACCTGACCGACGGCATTGGGGTT
196 TTTTCTTCGTC-GGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTT
* * * * * *
19329727 CCGACGATCGGGGGGGCCGTGGGGGGTGTGCGCTCATGATGTGTGGTGGGTGCTGGTAATTGGCC
260 TCGACGATC-GGGGGGCCG-GGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* **
19329792 CTTATATTGTCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAG
323 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * ** *
19329857 ATTTTATAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTCGTTTCAAAAGGT
388 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * ** *
19329922 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGGATGCCAAGTAAAATAGAAG
453 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* *** **
19329987 GATCACGTCTACCAAGTTTGGGACCAATAA-TCCTTCCAAAAAAATTTTAAAAAATCCCAAACTG
518 GATCACGTCTACCAAGTTTGGGACCAA-AACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCA
* * *
19330051 TAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
582 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
19330116 GCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGGCAATTGGGCAATGGACCATAAA
647 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GGC-ATT-GGC-A-CG--CAGAAA
*
19330181 TATAAAGATGTGCCCTAAAACCC-CCT---A-CCT-TCGATCCACGGCCTTGCGCA-CCCGTCTC
705 TATGAAGATGTG-CCT-AAACCCACCTACCACCCTATCGATCCACGG-CTTGCGCATCCCGTCTC
19330239 TCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGTTACGCTCGTTTCATCGGTTGGCTTTTAGGCAT
767 TCT-G--GGC---GT----G--CG-CCG--CG---CGCTCGTTTCATCGGTTGGC--TTAGGCAT
* * *** * *
19330304 -TGGAAGTTCATTCCCAGTCTAAGATCAAGACCTAGACAGAGGGTT-CTATAGTAGGATCGGCAG
812 ACGG-AGTTCATTCCCAGTCTAAGATC-AGACC-AGACCGAGGGTTGCGGCAGCAGGATCGACAG
** * *
19330367 CACACAGATCGAGG
874 CACGTAGA-GGGGG
* * * * * * *
19330381 ACTCCGGTCG-T--CCAGC-TGCACATCCCGCCACTCTGGCCGTC-CA-C-CCCGCACGCTCCGT
1 AC-CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCT-CGT
* * *
19330439 TTCGTGGATTGAACTTAGGCAATACGGAG-TCATT-CCAGTCTAAGCATGCAGAGTTCAATTCC-
64 TTCGTGGGTTG-ACTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC-ATTCCA
* *
19330501 AGTCTAAAGATC-GA-CGGA-CG-GGGTTTGTGGCAGCA-ATGCTGGGCTCGGGCATGTGCTGGT
126 AGTCT-AAGATCGGACCAGACCGAGGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
19330561 G-CAGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGACGGCAT
189 GCCA-CATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCAT
* *
19330625 TGGGGTTCCGACGATCGGGGTGGCCGAGGGGGAGTGT--GCACATGATGTGCAATGGGTGCTGGT
253 TGGGGTTTCGACGATCGGGG-GGCCG-GGGGG-GTGTCCGCACATGATGTGCGATGGGTGCTGGT
* *
19330688 ACTTGGCCCTTATCTTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
315 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
19330753 CATTTCAGATTTTACTA-GTTTCCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
380 CATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
19330817 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
444 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * *
19330882 AAATACAAGGATCACATCAACCAAGTTTGGGGA-AAAAAATCCTTTCGAAAAAATTTTAAAAAAT
509 AAATACAAGGATCACGTCTACCAAGTTT-GGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * *
19330946 CCTGAACCACAAAAAGTTTCAAAAAGT-GTGAAAAATAGAAAACGAGTCATCTCGCCATGAAACT
573 CTTGAACCACAAAAAGTTTCAAAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
19331010 TCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCAAAAAAATGGAATTGGCGCACAG
637 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
19331075 AAATATGAAGATGTGCCTAAACCCACCTACCACGCC-ATCGATCCACGGTTTGCGCATCCCGTCT
702 AAATATGAAGATGTGCCTAAACCCACCTACCAC-CCTATCGATCCACGGCTTGCGCATCCCGTCT
19331139 CTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
766 CTCT-G--GGC---GTG--CG-CCG--CG------CGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * *
19331204 GGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
814 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGT
*
19331269 AAAGGGGG
879 AGAGGGGG
* * * * * * ** * *
19331277 ACCCTATTGATCCTCGGCTTGCGCATCCCACCCCTC-AGGCTGACTAAGTTCCCGCAAGCTCAAT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTA-GCCGACTGAGCGCCCGCACGCTC-GT
** *
19331341 TT-GTGGGTTGACTTAGGCATATAGAGTTCATTTCCAGTCT----A-A--GA--TCA----AA-T
64 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGT
* * *
19331391 C-AA-A-CTG---AG---G-TGTTTGCGGCAGCACATTTGCTGGGCTCGGGACACTGT-CTGGTG
129 CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA--TGCTGGGCTCGGG-CA-TGTGCTGGTG
** ** * * *
19331445 CTGCATTTTTCTTCACCGGGG---CA-C-C---A--ATCGTCGGAGAACCTGACCGATGAC-TTG
190 CCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
** * * *
19331499 GGGTTTCGGTGGATCGGGGGGGCGGGGGGGTGAGCGGCACATGAATGTGCGATGGGTGCTGGTAC
255 GGGTTTC-GACGATCGGGGGGCCGGGGGGGTG-TCCGCACATG-ATGTGCGATGGGTGCTGGTAC
* *
19331564 TTGGCCCTTTATATTGG--CCCTATCCCTCATCAAACCTCGAGAACTCACACCCGCTTAAACAGT
317 TTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG-
* ** *
19331627 C-TTTAAGA-TTTACAGG-TTGCTTACTGTAGCCACTTAAAGTGTCTGAAATGGGGACAC-TTTT
380 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
19331688 TCTAAACTGGTCCAGAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
444 TC-AAA-TGGT-CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
** *
19331753 CAAAAATACAAGGATCACGTCT-CCAAGTTTGGG-CCAAAACTCCTTAAGAAAAAGTTTTAAAAA
506 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * *
19331816 ATCTCGAACCATAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCGTCTTGGCATGAAAC
571 ATCTTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
19331880 TTCATGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTCGCACGTA
636 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
19331945 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACAC-GCTTGCGCAACCCGTCT
701 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
19332009 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCTAGTTTCGTCGGTTGGCTTAGGCTTACGAAGTTCA
766 CTCTGG--G-C---GTG--CG-CCGCGCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * *
19332074 TTCCCAGTCTAAGAT-AGGACCAGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGG
822 TTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGG
19332138 G
886 G
* ** * * * * * * * * *
19332139 TCCCGGCCGATCACTGACTTACGCATCCCGCTCCTCTGGACCG-CTGACCGCCCGCACACTCATT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAG-CCGACTGAGCGCCCGCACGCTCGTT
* * **
19332203 TCATGGGTTGACTTAGGCATACGGAG-TCATTCCCAGTCTAACCATACAAAGTTCATTCGC-AGT
65 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC-CAAGT
* * * * *
19332266 CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACGTGCTGGGCTTGGGCATGGGCTGGAGCCGC
129 CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
* * *
19332331 ATTTTTCTTCG-CAGGGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGG
194 ATTTTTCTTCGTC-GGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* ** * * *
19332395 -TTCTGTCGATCGGGGGGCTCGGGGGGGTGTGTGCACATGATGTACGATGGGTGCCGGTACTTCG
258 TTTC-GACGATCGGGGGGC-CGGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
19332459 CACTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTG
321 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
19332524 AGATTTTACAGGTTTGCTGCCATTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
386 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
19332589 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAACTTTTTTGTGCATGCCAAAAAAAATACA
451 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
** * * * * *
19332654 AGGATCACGTCTACCAAGTTTGGGGTCAAATCTTCTTCC-AAAAAAATTTACAAAATCCTGAACC
516 AGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACC
** *
19332718 ACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
581 ACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
19332783 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
646 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * *
19332848 GATTTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCT-GGC-T
711 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGT
* * * * *
19332911 G-G-CG-G-GCTCGTTTCGTCGGTTAGCTTAGGTATACAGAGTTCATTCCTAGTCTAAGATCAGA
776 GCGCCGCGCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
19332972 CCAGACCGAGGGTTGCAGCAGCAGGATCAACAGCATGTAGAGGGGG
841 CCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGG
* * *
19333018 ACCCGATCGAACCCCGGCTTGCGCATCCTGCCCCTCTAGCCGACTGAGCGCCTGCACGCTCGTTT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTT
* * * *
19333083 CGTGGGTTAACGTAGGCATACGGAGTTCATTCTCAGTCTAAGCATATGGAGTTCATTCCAAGTCT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCT
* *
19333148 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATAT
131 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
* ** *
19333213 TTTTCTTTGTCGGGGCACCATCGCTGGAGCATCGTTGGAGAACCTGACCGACGGCATTTGGGTTT
196 TTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTT
* * *
19333278 CGGCGATCAGGGGGGCCGGGGGGGATGTCCGCACATGATGTGTGATGGCTGCTGGTACTTGGCCC
261 CGACGATC-GGGGGGCCGGGGGGG-TGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
19333343 TTATATTGGCCCCCTATCCCTCCTCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGA
324 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
19333408 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTC
389 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
19333473 ACAAAATCTTGTACACTTCGA-TTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAG
454 ACAAAATCTTGTACACTTCGAGTTTT-TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * *
19333537 GATCATGTCTGCCAAGTTTGGGACCAAAACTTCTTCCGAAAATATTTTAAAAAATTTTGAACCCC
518 GATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCAC
* **
19333602 AAAAAGTTTCAAAAATCGTGAAAAATTGAAAACGAGTTATCTTGCCATGAAACTTCACGTGAAGG
583 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
19333667 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
648 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
19333732 TTTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCT-GGC-TG-
713 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGTGC
* * * * *
19333794 G-CG-G-GCTCGTTTCGTCGGTTAGCTTAGGTATACAGAGTTCATTCCTAGTCTAAGATCAGACC
778 GCCGCGCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * *
19333856 AGACCGAGGGTTGCAGTAGCAGGATCAACAGCATGTAGAGGGGG
843 AGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGG
* * * * *
19333900 ACCCGATCGAACCTCGGCTTACGCATCCTGCCCCTCTAGCCGACTGAGCGCCTGCACGCTCGTTT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTT
* *
19333965 TGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCAAGTCT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCT
* *
19334030 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATAT
131 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
* ** *
19334095 TTTTCTTTGTCGGGGCACCATCGCTGGAGCATCGTTGGAGAACCTGACCGACGGCATTTGGGTTT
196 TTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTT
* * *
19334160 CGGCGATCAGGGGGGCCGGGGGGGATGTCCGCACATGATGTGTGATGGCTGCTGGTACTTGGCCC
261 CGACGATC-GGGGGGCCGGGGGGG-TGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
19334225 TTATATTGGCCCCCTATCCCTCCTCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGA
324 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
19334290 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTC
389 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
19334355 ACAAAATCTTGTACACTTCGA-TTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAG
454 ACAAAATCTTGTACACTTCGAGTTTT-TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * *
19334419 GATCATGTCTGCCAAGTTTGGGACCAAAACTTCTTCCGAAAATATTTTAAAAAATTTTGAACCCC
518 GATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCAC
* **
19334484 AAAAAGTTTCAAAAATCGTGAAAAATTGAAAACGAGTTATCTTGCCATGAAACTTCACGTGAAGG
583 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
19334549 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCATGCAGAAATATGAAGA
648 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
19334614 TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTTTCTCTGGCCGGTG
713 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG--TCTCT--CTGG-G
* * *
19334679 TAGTGCCAACCCGCCCGCCCGCCCGCCCACTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCA
773 -CGTG------CG-CCG--CG--CG----CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * *
19334744 TTCCCAGTCTAAGATCTGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGTAGAGGGGG
822 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGG
* * * ** * *
19334809 AACCGACCGATCCCCGGCTTGCGCATCCGGTGCCACTAGCCGACTAAGCGCCCGCACGCTCGTTT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTT
* * * * * *
19334874 CGTGGCTTAACTCAGGCATACGGAGTTCAGTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCT
* ** * * *
19334939 AAGATCAGACCAGACCGAGGGTTGCGATAACACATGCCGAGCTCGGGCA
131 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
19334988 ACGTCGGAGA
Statistics
Matches: 4805, Mismatches: 500, Indels: 398
0.84 0.09 0.07
Matches are distributed among these distances:
861 17 0.00
862 150 0.03
863 2 0.00
865 1 0.00
866 1 0.00
867 1 0.00
868 2 0.00
869 2 0.00
870 42 0.01
871 152 0.03
872 99 0.02
873 97 0.02
874 99 0.02
875 11 0.00
876 2 0.00
877 1 0.00
878 6 0.00
879 167 0.03
880 167 0.03
881 262 0.05
882 1104 0.23
883 37 0.01
884 11 0.00
885 17 0.00
886 4 0.00
887 5 0.00
888 50 0.01
889 156 0.03
890 224 0.05
891 102 0.02
892 145 0.03
893 223 0.05
894 93 0.02
895 24 0.00
896 39 0.01
897 121 0.03
898 85 0.02
899 239 0.05
900 78 0.02
901 73 0.02
902 31 0.01
903 9 0.00
904 350 0.07
905 60 0.01
906 4 0.00
909 240 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCT
AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
TTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTT
CGACGATCGGGGGGCCGGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCACAAA
AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGTGCGCC
GCGCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
CCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGG
Found at i:19334016 original size:26 final size:26
Alignment explanation
Indices: 19333980--19334032 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19333970 GTTGACTTAG
19333980 GCATACGGAGTTCATTCTC-AGTCTAA
1 GCATACGGAGTTCATTC-CAAGTCTAA
19334006 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19334032 G
1 G
19334033 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:19334925 original size:26 final size:26
Alignment explanation
Indices: 19334889--19334941 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19334879 CTTAACTCAG
19334889 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
* *
19334915 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
19334941 G
1 G
19334942 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:19337116 original size:26 final size:26
Alignment explanation
Indices: 19337080--19337132 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19337070 GTTGACTTAG
19337080 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
19337106 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
19337132 G
1 G
19337133 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:19338069 original size:900 final size:889
Alignment explanation
Indices: 19336225--19338899 Score: 3487
Period size: 889 Copynumber: 3.0 Consensus size: 889
19336215 ATTGGCTTAG
* * *
19336225 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
* * ** *
19336290 CTGGAGCATGTGCAGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCAGGTGTCACATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGTC-GAGA
* * * *
19336355 ACCTGACCGGCGGCATTAGGGTTCTGGCGATCGAGGGGGTCAGGAGGGGGTGTGCGCACATGATG
129 ACCTGACCGGCGGCATT-GGGTTCCGGTGATCG-GGGGGGCCGG-GGGGGTGTGCGCACATGATG
* * * *
19336420 TACGGTGGGTCCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* * *
19336485 ACACCCCCTTAAAGAGCATTTCAGATTTTA-AAGGTTTGCTGCCAGTAGCCGTTAAAGTATCTGA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
19336549 AATGGGGACATTTTTTTCAACTGGTCACAAAATCTTTTACACTTTGAGTTTTTAGCTGAATTGTT
320 AATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
19336614 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
384 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-TAAAACTCCTTCCGAA
* * *
19336679 AAAATGTTAAAAAATCCCGAACCGCAAAAAG--T------T--T--AAAATAGAAAACGAGTCGT
448 AAAATTTTAAAAAATCACAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * **
19336732 CTTGCCATGAAAATTCACGTGAAGGCTTAAAGGACCATTGTTTGAATTTACAAGCCATAAAAATG
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATG
* *
19336797 GCATTGGCACGTAGAAATATCAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
578 GCATTGGCACGTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
19336862 GAGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCCG---GTCGTT-TC-ATCGG-TTAG
643 GCGCATCCCGTCTCTCTGG-CTGCGTAGTGCCCGCCCGCCCGCCCCTCTTTCTCGATCGGCTTAG
* * * ** * *
19336921 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTATGGTAGCAGGATCGGTA
707 GCATATGAAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGGCAGCAGGATC-GCA
* * * *
19336986 GCACGTAGAGGAGGACCCAGCCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGTC-AGCTGAGCG
771 GTACGTAGAGGGGGACCGA-CCAATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGA-CTGAGCG
* * *
19337050 CCCGCACGTTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
834 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** * *
19337106 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAAATCAAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGA-CAGCACATGCTGG
* **
19337170 GCTTGAGCATGTGTTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGATG
65 GCTCGAGCATGTGCAGGTGTCACATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGTCGA-G
* *
19337235 AACCTGACCGACGGCATTGGGATTCCGATGATCGGGGGGGCCGGGTGGGGTGTGCGCACATGATG
128 AACCTGACCGGCGGCATTGGG-TTCCGGTGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATG
* *
19337300 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATGAAACCTTGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
*
19337365 ACACCCCCTTAAAGAACATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19337430 ATGAGGACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
321 ATGGGGACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19337495 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTAAAAATTCCTTCCGAAAA
386 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGT-AAAACTCCTTCCGAAAA
* *
19337560 AATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCACAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19337625 TACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGC
* * *
19337690 ATTGGCACATAAAAATATGAAGAATAT-CCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
580 ATTGGCACGTAGAAATATGAAG-ATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
19337754 CGCATCCCGTCTTTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCACTCATTTCGTCGGTCGGCTT
644 CGCATCCCGTCTCTCTGGCT-GCGTAGTGCCCGCCCGCCCGCCC-CTC-TTTC-TCGATCGGCTT
* *
19337819 AGGCATATGAAGTTCATTCCCAATCTAAGATTGGATCAGACTGAGGGTTGCGGCAGCAAGATCGA
705 AGGCATATGAAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGGCAGCAGGATCG-
** * * *
19337884 CAGTACGTAGAGGGGGACCTGACCGTTCCTTGGCTTGCGCATCCTGCCCCTCTGGCCGACAGAGC
769 CAGTACGTAGAGGGGGACC-GACCAATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGACTGAGC
* * *
19337949 ACCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19338006 GCATACGTAGTTTATTCCCAGTCAAAGATCAGACTGGACCGAGGGTTGCGACAGCATATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
19338071 CTCGAGCATGTGCCGGTGTCGCATTTTTCTTCGTCGGGGCACCA--T-----CATCG--GAGAAC
66 CTCGAGCATGTGCAGGTGTCACATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGTCGAGAAC
*
19338127 CTGACCGGCGGCGTTGGGGTTCCGGTGATC-GGGGGGCCGAGGGGGGTGTGCGCACATGATGTGC
131 CTGACCGGCGGCATT-GGGTTCCGGTGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGC
* * **
19338191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGTGAACTCATG
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*** * * * * *
19338256 CTAGCGTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19338321 GGGATGC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTA
324 GGGA--CATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
19338385 TGCATGCCAAAAAAAATACAAGGATGACATCTACCAAGTTTGCGGCTAAAACTCCTTTCGAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGTAAAACTCCTTCCGAAAAA
* *
19338450 ATTTTAAAAAATCACAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTT
451 ATTTTAAAAAATCACAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19338515 GCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATC-AATTTACAAGCCATAAAAATGGC
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA-CGAATTTACAAGCCATAAAAATGGC
* * * *
19338579 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGC
580 ATTGGCACGTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
19338644 GCATCCCGTCTCTCTGGCCTGCGTAGTGCCCGCCCGCCTGTCCGCCCGCTCGTTTCATCGATTGG
645 GCATCCCGTCTCTCTGG-CTGCGTAGTGCCCGCCCG-C---CCGCCC-CTC-TTTC-TCGATCGG
** * * * *
19338709 CTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGCTGCAGCAGCAGGAT
702 CTTAGGCATATGAAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGGCAGCAGGAT
** * * *
19338774 C-C-GTAACAGGTAGAGGGGGACCCGGTCAATCCCTAGCTTGCGCATCCTGCCCCTCTGGTTGGC
767 CGCAGT-AC--GTAGAGGGGGA-CCGACCAATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGAC
*
19338837 TGAGCGCCAGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
828 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
19338899 G
1 G
19338900 ATTGGACCGG
Statistics
Matches: 1572, Mismatches: 173, Indels: 86
0.86 0.09 0.05
Matches are distributed among these distances:
879 137 0.09
880 157 0.10
881 136 0.09
887 1 0.00
888 152 0.10
889 346 0.22
890 16 0.01
891 174 0.11
892 8 0.01
893 177 0.11
894 2 0.00
895 2 0.00
896 2 0.00
897 1 0.00
898 2 0.00
899 5 0.00
900 251 0.16
901 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (889 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGAGCATGTGCAGGTGTCACATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGTCGAGAAC
CTGACCGGCGGCATTGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAACTCCTTCCGAAAAAATTTT
AAAAAATCACAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGC
ACGTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCTGCGTAGTGCCCGCCCGCCCGCCCCTCTTTCTCGATCGGCTTAGGCATATGAA
GTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGGCAGCAGGATCGCAGTACGTAGAG
GGGGACCGACCAATCCCTGGCTTGCGCATCCTGCCCCTCTGGTCGACTGAGCGCCCGCACGCTCA
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19339477 original size:591 final size:595
Alignment explanation
Indices: 19338342--19339490 Score: 1630
Period size: 591 Copynumber: 1.9 Consensus size: 595
19338332 TTCAAATGGT
*
19338342 CACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTATGCATGCCAAAAAAAATACAAG
1 CACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTATGCATGCAAAAAAAAATACAAG
* * * *
19338407 GATGACATCTACCAAGTTTGCGGCTAAAACTCCTTTCGAAAAAATTTTAAAAAATCACAAACCGT
66 GATCACATCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAAATGTTAAAAAATCACAAACCGT
*
19338472 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAAACCTCACGTGAAGG
131 AAAAAG-TT-----ATC-T-AAAAATAGAAAACGAGTGATCTTGCCATGAAACCTCACGTGAAGG
*
19338537 CTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
188 CTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * *
19338602 TGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCTGCG
253 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCTGCG
* * * * *
19338667 TAGTGCCCGCCCGCCTGTCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATATGAAGTTCATTCC
318 TAGTGCCCGCCCACCCGCCCACCCGCTCGTTTCATCGATTGGCTTAGGCATACGAAGTTCATTCC
*** ***
19338732 CAGTCTAAGATCAGATCGGACCGAGGGCTGCAGCAGCAGGATCCGTAACAGGTAGAGGGGGACCC
383 CAGTCTAAGATCAGATCGGACCGAGGGCTGCAGCAGCAGGATCAACAACACACAGAGGGGGACCC
* * ** *
19338797 GGTCAATCCCTAGCTTGCGCATCCTGCCCCTCTGGTTGGCTGAGCGCCAGCACGCTCATTTCGTG
448 GGTCAATCCCTAGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCATTTCATG
*
19338862 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAT
513 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAT
19338927 TTTTCTTAGGCAACTGGC
578 TTTTCTTAGGCAACTGGC
* * * *
19338945 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGTAAAAAAAAATACAAG
1 CACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTATGCATGCAAAAAAAAATACAAG
* * * *
19339010 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATGTTAAAAAATCCCGAACCGT
66 GATCACATCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAAATGTTAAAAAATCACAAACCGT
* * *
19339075 AAAAAG-T-T-T-AAAATAGAAAACGAGTTATTTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
131 AAAAAGTTATCTAAAAATAGAAAACGAGTGATCTTGCCATGAAACCTCACGTGAAGGCTTAAGGG
* *
19339136 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTTCCTA
196 ACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* *
19339201 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCC-GATGTAGTGTC
261 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCTG-CGTAGTGCC
* * *
19339265 CGCCCACCCGCCCACCTGCTCGTTTCGTC-AGTTGGCTTAGGCATACGAAAG-TCATTCCCAGTT
325 CGCCCACCCGCCCACCCGCTCGTTTCATCGA-TTGGCTTAGGCATACG-AAGTTCATTCCCAGTC
* * * * * *
19339328 TAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCAACAACACACAGAGGGGGACTCGGTCG
388 TAAGATCAGATCGGACCGAGGGCTGCAGCAGCAGGATCAACAACACACAGAGGGGGACCCGGTCA
* * * * *
19339393 AT-CCTCGGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGTACGCTCGTTTCATGGGTT
453 ATCCCT-AGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCATTTCATGGGTT
19339457 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
517 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
19339491 CATAAGGAGT
Statistics
Matches: 486, Mismatches: 56, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
590 5 0.01
591 352 0.72
592 3 0.01
593 1 0.00
595 1 0.00
601 1 0.00
603 123 0.25
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (595 bp):
CACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTATGCATGCAAAAAAAAATACAAG
GATCACATCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAAATGTTAAAAAATCACAAACCGT
AAAAAGTTATCTAAAAATAGAAAACGAGTGATCTTGCCATGAAACCTCACGTGAAGGCTTAAGGG
ACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCTGCGTAGTGCCC
GCCCACCCGCCCACCCGCTCGTTTCATCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
GATCAGATCGGACCGAGGGCTGCAGCAGCAGGATCAACAACACACAGAGGGGGACCCGGTCAATC
CCTAGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCATTTCATGGGTTGACT
TAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACATTTTTCTTA
GGCAACTGGC
Found at i:19342127 original size:26 final size:26
Alignment explanation
Indices: 19342091--19342143 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19342081 GTTGACTTAG
19342091 GCATACGGAGTTCATT-CCCAGTCTAA
1 GCATACGGAGTTCATTCCCCA-TCTAA
19342117 GCATACGGAGTTCATTCCCCATCTAA
1 GCATACGGAGTTCATTCCCCATCTAA
19342143 G
1 G
19342144 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCCATCTAA
Found at i:19342971 original size:904 final size:889
Alignment explanation
Indices: 19338945--19343650 Score: 5106
Period size: 904 Copynumber: 5.3 Consensus size: 889
19338935 GGCAACTGGC
* *** *
19338945 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGTAAAAAAAAATACAAG
1 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATACCAACAAAAATACAAG
* * * * *
19339010 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATGTTAAAAAATCCCGAACCGT
65 GATCACGTCTACCAAGTTTGGAGCCAAACCTCATTCCAAAAAAATTTTAAAAAATCCCGAACCGT
** *
19339075 AAAAAG---T-----T--T--AAAATAGAAAACGAGTTATTTTGCCATGAAACTTCACGTGAAGG
130 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
19339128 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
195 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * * *
19339193 TGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCC-GAT
260 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCACTGGCCAG-C
** * ** * * * *
19339257 GTAGTGTCCGCCCA-CCCGCCCACCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAAG-TCAT
324 GTAGTACCCG-CCAGCCCACCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG-GAGTTCAT
* * * * * * *
19339320 TCCCAGTTTAAGATCAG-ATC-GGATCGAGGGTTGCGGTAGCAGGATCAACAACACACAGAGGGG
387 TCCCAGTCTAAGATC-GCA-CGGGACCAAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGG
* * * * * * ** * *
19339383 GACTCGGTCGATCCTCGGCTTGCCCATCCCGCCCC-TCTGGCCGGCTGAGTGCCCGTACGCTCGT
450 AACCCGGTCGACCCCCGGCTTGCGCATCCCGCCCCAT-TGGCCGACTGAGCACCCGCACACTCGT
* * * * *
19339447 TTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCACAGT
514 TACGTGGGTTGACTTAGGCATACGGAG---ATT---A-T-T--GCAT-ACGAGTTCATTCCCA-T
* * * * **
19339512 CTAAGATC-AGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTTAGGCATGTGCTGGTGCCG
567 CTAAGATCGA-ACCGGACCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCG
* * * * *
19339576 CATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCAGAGAACCTAACCGGCAGCATTGGGG
631 CATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* * *
19339641 TTCCGGCGATCGGGGGGGC-CGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGC
696 TTCCGACGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
19339705 CCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGGATTTGA
760 CCTTATATTGGCCCCCTATCCCTCATCAAACCT-CAGAACTCACACCCCCTTAAAAAGCATTTGA
** * *
19339770 GATTTTACAGGTTTGCTGCCAGTAGTAATTAAAGTTTCTGAAATTGGGACACTTTTTTCAAATGG
824 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
19339835 T
889 T
* * *
19339836 CACAAAATCTTTTACACTAT-AAG--TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
1 CACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAA-TTTTTTGTGCATACCAACAAAAATACAA
* * * * * * *
19339898 GGATCACGTCTACTAATTTTGTG-GCCAAAACTTATTCCGAAAAAATTTAAAAAAATCCCAAACC
64 GGATCACGTCTACCAAGTTTG-GAGCCAAACCTCATTCCAAAAAAATTTTAAAAAATCCCGAACC
**
19339962 GTAAAACA-TTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
128 GTAAAA-AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
19340026 AGGCTTAAGGGACCATTGTATGAATTTAAAAGGCATAAAAATGGCATTGGCATGCAGAAATATGA
192 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * *
19340091 AGATGTGCCTAAACCCACCCACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC-
257 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCACTGGCCA
* * * * ** * *
19340155 G-G-GGTA---G--TGCCCGCCTGCCCGTTTATTTCGTCGGTTGGCTTAGGCATACGGACTTCAT
322 GCGTAGTACCCGCCAGCCCACCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * *
19340213 TCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACACAAAGGGGGA
387 TCCCAGTCTAAGATCGCACGGGACCAAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGAA
* * * * ** * * * * *
19340278 CCCGATCGATCCCCGGCTTGCGCATCTCTCCCTTTTGGCCGGCTGAGCGCCTGCACGCTCGTTTC
452 CCCGGTCGACCCCCGGCTTGCGCATCCCGCCCCATTGGCCGACTGAGCACCCGCACACTCGTTAC
19340343 GTGGGTTGACTTAGGCATAC----------G-----GAGTTCATTCCCAGTCTAAGATC-AGACC
517 GTGGGTTGACTTAGGCATACGGAGATTATTGCATACGAGTTCATTCCCA-TCTAAGATCGA-ACC
* * * * * ** * *
19340392 AGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTT
580 GGACCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC
* * * * * * * *
19340457 GGGGCACCATCATCGGAGCATCGCTGAAGAACCTGACCGGTGGCTTTGGGGTTCCCG-TGATTGA
645 GAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT-CCGACGATCG-
* * * * *
19340521 GGGAG-TCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGATACTTGGACCC-TATATCGGC
708 GGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCCTTATATTGGC
* * * *
19340584 CTCCTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGT
772 CCCCTATCCCTCATCAAACC-TCAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGT
* * ** *
19340649 TTGCTACCAGTAGCCATTAAAGTGCCCAAAATGGGGACACTTTTGTCAAATGGT
836 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
19340703 CCCAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGAATGCCAGA-AAAAATACAA
1 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATACCA-ACAAAAATACAA
** * * * * * * * * * *
19340767 GGATCATATCTACCAGGTCTGGGGCCAAAACTCCTTCAAAAAAAAATTTAGAAAATCCCGAATCA
64 GGATCACGTCTACCAAGTTTGGAGCCAAACCTCATTCCAAAAAAATTTTAAAAAATCCCGAACCG
* ** * * * *
19340832 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTAGTCTTG-CATGAAACTTCATGTAAAG
129 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
19340896 GCTTAAGGGACCATTTTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
194 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
19340961 ATATG----------GCT---A----AT-G---CACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
259 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCACTGGCCAGC
* * ** * ** *
19341005 GTAGTGCCCACCCTCCC-GCTCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATT
324 GTAGTACCCGCCAGCCCACCT-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * * * * * * * * * *
19341069 CCCAGTCTAATATCAAACCGGACCGAGGGTTGCGGTAGTAGCATCGGCAACACGCAGAGGGGGAC
388 CCCAGTCTAAGATCGCACGGGACCAAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGAAC
* * * * * * * * *
19341134 CCAAGTCGATCCCCGGCTTGCGCATCCTG-CCCTTCTGGCCGACTGAGCGCTCGCACGCTCATTT
453 CC-GGTCGACCCCCGGCTTGCGCATCCCGCCCCAT-TGGCCGACTGAGCACCCGCACACTCGTTA
* * *
19341198 TGTGGGTTGACTTACGCATAC----------G---A--AGTTCATTCCCAGTCTAGGATC-ATAC
516 CGTGGGTTGACTTAGGCATACGGAGATTATTGCATACGAGTTCATTCCCA-TCTAAGATCGA-AC
* * * * * *
19341247 CGGACCGAGGGTTACGG-AGGCACATGCTGGGCTCGAGCATCTGCTGGCGTCGCATTTTTCTTCA
579 CGGACCGAGGGTTGCGGTA-GCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
** * *
19341311 TCGAGGCACCATCACCGGAGCATTGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCG
643 TCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * * *
19341376 GGGGGGTCGGGGGGGTGTGCGCACATGATGAGCAAAGGGTGCTGGTACTTGGCCCTTATATTGGC
708 GGGGGCT-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
19341441 CCCCTATCCCTCATCAAACATCGAGAACTCGCACCCCCTTAAAAACCATTTGAGATTTTACAGGT
772 CCCCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGT
* *
19341506 TTGCTGCCAGTAGCCATTAAATTGTCTGAAGTGGGGACACTTTTTTCAAATGGT
836 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
19341560 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATAAAAG
1 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATACCAACAAAAATACAAG
* ** * * *
19341625 GATCACGTCTACCAAGTTATTGA-CCAAAAATC-TATCCAAAAAAATTTTGAAAAATCCCCAACT
65 GATCACGTCTACCAAGTT-TGGAGCCAAACCTCAT-TCCAAAAAAATTTTAAAAAATCCCGAACC
* * *
19341688 GCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACATGAA
128 GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * * *
19341753 GGCTTCAGAGACCATTGGATGAATTTACAAGCCATAAAAATAGCATTGGCAAGCAGAAATATGAA
193 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* *
19341818 GATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCAG
258 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCACTGGCCAG
* * *
19341883 CGTAGTACCCGCCCGCCCGCCTGCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATT
323 CGTAGTACCCGCCAGCCCACCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * **
19341948 CCCAGTCTAAGATCGGACGGGACTAAGGGTTACGGCAGCCGGATCGGTAGCACACAGAGGGGAAC
388 CCCAGTCTAAGATCGCACGGGACCAAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGAAC
19342013 CCGGTCGACCCCCGGCTTGCGCATCCCGCCCCATTGGCCGACTGAGCACCCGCACACTCGTTACG
453 CCGGTCGACCCCCGGCTTGCGCATCCCGCCCCATTGGCCGACTGAGCACCCGCACACTCGTTACG
19342078 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCCATCTAA
518 TGGGTTGACTTAGGCATACGGAG---ATT---A-T-T--GCATAC-GAGTTCATT-CCCATCTAA
* *
19342143 GATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTT
571 GATCGAACCGGACCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * *
19342208 TTCTTCATCGAGGCACGATTGTCGGAGCATCGTCGGAGAACCAGACCGACGGCATTGGGGTTCCG
636 TTCTTCATCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* *
19342273 GCGATCGAAGGGGCTGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
701 ACGATCG-GGGGGCTGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
19342338 ATATTGGCCCCGTATTCCTCATCAAACCTCAAGAACTCACACCCCCTTAAATAGCATTTGAGATT
764 ATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTAAAAAGCATTTGAGATT
* *
19342403 TTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGAT
828 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
19342465 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATACCGACAAAAATACAAGG
1 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATACCAACAAAAATACAAGG
* *
19342530 ATCACGTCTACTAAGTTTGGAGCCAAACCTCATTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
66 ATCACGTCTACCAAGTTTGGAGCCAAACCTCATTCCAAAAAAATTTTAAAAAATCCCGAACCGTA
*
19342595 AAAAGTTTT-AAATATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
131 AAAAGTTTTGAAA-ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
19342659 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
195 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* **
19342724 TGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCGCATCCCGTTTCACTGGCC-GAC
260 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCACTGGCCAG-C
* * *
19342788 GTAGTGCCCGCCAGCCCA-CTCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATT
324 GTAGTACCCGCCAGCCCACCT-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *** *
19342852 CCCAGTCTAAGATTGCATC-GGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTTGAGGGGGA
388 CCCAGTCTAAGATCGCA-CGGGACCAAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGAA
* ** * ** * *
19342916 CCCGGTCGATCCCCGGCTTGCGCATTTCGCCCC-TCTGGCCGGCTGAGGGCCCGCACGCTCGTTT
452 CCCGGTCGACCCCCGGCTTGCGCATCCCGCCCCAT-TGGCCGACTGAGCACCCGCACACTCGTTA
19342980 CGTGGGTTGACTTAGGCATACGGAGATTATT-C---C-----CA-----ATCTAAGATCGAACCG
516 CGTGGGTTGACTTAGGCATACGGAGATTATTGCATACGAGTTCATTCCCATCTAAGATCGAACCG
* * * * **
19343031 GACTGAGGCTTGCGGTAGCACATGCTAGGCTCGGCCATGTTCTGGTGCCGCATTTTTCTTTGTCG
581 GACCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCG
* * *
19343096 GGGCACCATCGTCGGAGAATCGCCGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
646 AGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGG
* * * *
19343161 GGGCCAGGGGGGCTATGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
710 GGG-CTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
19343226 CCTATCCCTCATCCAACCTTCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
774 CCTATCCCTCATCAAACC-TCAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
*
19343291 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGT
838 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
19343343 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAG
1 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATACCAACAAAAATACAAG
* * * *
19343408 GATCATGTCTACCAAGTTTGGGGCCAAGCCTCATTCCAAAAAAATTTTAAAAAATCCTGAACCGT
65 GATCACGTCTACCAAGTTTGGAGCCAAACCTCATTCCAAAAAAATTTTAAAAAATCCCGAACCGT
* *
19343473 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACCTCACGTGAAGG
130 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
19343538 CTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGA
195 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
19343603 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
260 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
19343651 TGTCTCTCTG
Statistics
Matches: 3292, Mismatches: 403, Indels: 252
0.83 0.10 0.06
Matches are distributed among these distances:
847 28 0.01
848 1 0.00
849 1 0.00
850 3 0.00
851 2 0.00
854 2 0.00
855 110 0.03
856 203 0.06
857 290 0.09
858 80 0.02
866 2 0.00
867 306 0.09
868 92 0.03
869 122 0.04
870 1 0.00
871 1 0.00
873 1 0.00
875 2 0.00
876 1 0.00
878 387 0.12
879 406 0.12
880 5 0.00
884 2 0.00
889 97 0.03
890 3 0.00
891 19 0.01
892 4 0.00
893 164 0.05
894 1 0.00
895 1 0.00
896 1 0.00
897 2 0.00
898 4 0.00
899 2 0.00
901 164 0.05
903 10 0.00
904 568 0.17
905 204 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATACCAACAAAAATACAAGG
ATCACGTCTACCAAGTTTGGAGCCAAACCTCATTCCAAAAAAATTTTAAAAAATCCCGAACCGTA
AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCACTGGCCAGCGT
AGTACCCGCCAGCCCACCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCGCACGGGACCAAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGAACCCG
GTCGACCCCCGGCTTGCGCATCCCGCCCCATTGGCCGACTGAGCACCCGCACACTCGTTACGTGG
GTTGACTTAGGCATACGGAGATTATTGCATACGAGTTCATTCCCATCTAAGATCGAACCGGACCG
AGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCA
CCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCTG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
Found at i:19343731 original size:26 final size:26
Alignment explanation
Indices: 19343695--19343747 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19343685 GTTGACTTTG
* *
19343695 GCATACAGAGTTCATTCCTAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
19343721 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19343747 G
1 G
19343748 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19345414 original size:898 final size:895
Alignment explanation
Indices: 19343658--19346393 Score: 3972
Period size: 898 Copynumber: 3.0 Consensus size: 895
19343648 TCCTGTCTCT
* * * * * *
19343658 CTGAGCGCCCGTACGCTCGTCTCGTGGGTTGACTTTGGCATACAGAGTTCATTCCTAGTTTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
19343723 ATACGGAGTTCTTTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGCGGCAGCACATGCTGGGCT
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *** * * * * *
19343788 TCGGCATGTGCTGGTGCCGCATTTCTCTTCGTTGGGGCTCTATTGCCGGAGCATCGTCGGAGAAC
131 T-GGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCATCGGAGAAC
** * * * *
19343853 CTGACCGGTGGCATTGGGGTTCCGACGATC-GGGTGGCCGGGGGGGTGTGCGCACATTATGTGTG
195 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
* *
19343917 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACAA
259 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
19343982 CCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAACTAG
324 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-G
* * *
19344047 GGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTATG
388 GGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* * * *
19344112 CAAGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATGC-TTCTGAAAAAA
453 CATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAA
* * *
19344176 TTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
516 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
19344241 CCATGAAACTTTACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATGGCAT
581 CCATGAAACTTTACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATGGCAT
*
19344306 TGGCACATAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
646 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
**
19344371 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTTGCCCGCTCATTTCGTCGGTTGGCTTAGG
711 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
* * * * *
19344436 CATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGACGATTGCT-GTAGTAGGATTGACT
776 CATAC-GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-TGGTAGTAGGATCGACA
* * * *
19344500 GCACATAGAAGAGGACCCGATCGATCCCCGACTTGCGCATCCCGCCTCTCTAGCCGG
839 GCACATAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGG
* * *
19344557 CTGAGCTCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
** *
19344622 ATATAGAGTTCATTCCCAGTCTAAGGTCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
19344687 TGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCAGGCCACCATCGTCGGAGCATCACCAGAGAAC
131 T-GGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCATCGGAGAAC
* * *
19344752 TTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGA
195 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * * *
19344817 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATAAAACCTCGAGAAGTCACACC
260 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19344882 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGG
325 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
19344947 GCACTTTTTTCAATTGGTCACAAAATCTTGTATACTTCGAGTTTTTGGCTGAATTTTATTCTGCA
390 GCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
* *
19345012 TGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
455 TGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
** * * *
19345077 TAAAAAATCTTGAACCGTAGAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
519 TAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * * **
19345142 TGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGG
584 TGAAACTTTACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATGGCATTGG
* *
19345207 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATC
649 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
19345272 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
714 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
* * * *
19345337 ACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGTAGGATCGACAACAC
779 AC-GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCAC
* * * *
19345402 GTAGAGGAGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCAG
843 ATAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGG
*
19345455 CTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * ** * *
19345520 ATACGGAGTTCATTCGCAATCTAAGAACGGACTGGACCGAGGGTTACGGCAGCACATGTTGGGCT
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
19345585 CTGGCATGTGCTGGTGCCACT-TTTTTCTTCGCCAGGGCACCATCGTCAGAGCGTCATCGGAGAA
131 -TGGCATGTGCTGGTGCC-GTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCATCGGAGAA
* * *
19345649 CCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGACCGGGGGGTGTGCGCACATGATGTACG
194 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
19345714 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
259 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
19345779 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
324 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * * *
19345844 GGACACTTTTTTCAAATGGTCA-AAAATTGTTGTACATTTCGAGATTGTAGTTGAATTTTTTTGT
389 GG-CACTTTTTTCAAATGGTCACAAAA-TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * *
19345908 GCTTGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAACTCCTTTCAAAAAAAT
452 GCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
19345973 TTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
517 TTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
19346038 CATGAAACTTTACATGAAGGCTTAAGGGACCATCGTATGAATTTACAAGAGATAAAAATGGCATT
582 CATGAAACTTTACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATGGCATT
*
19346103 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCA
647 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
19346168 TCCCGTCTCTCTGGCCGGTGTAGTGCTCGCCCATCCGCCCGCCCGCTCATCTCGTCGGTTGGCTT
712 TCCCGTCTCTCTGGCCGGCGTAGTGC-C-CGC--CCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
* ** * * *
19346233 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGTCTGGACCGAGGGTTGCGGTAGCAGGATCGG
773 AGGCATACG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGA
* * * * * * *
19346298 TAGCACACAGAGGGGGACCTGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGG
837 CAGCACATAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGG
*
19346357 TTGAGCGCCCGCACGCTCG-TTCTGTGGGTTGACTTAG
1 CTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAG
19346394 TCACACCCAG
Statistics
Matches: 1630, Mismatches: 194, Indels: 23
0.88 0.11 0.01
Matches are distributed among these distances:
897 1 0.00
898 1065 0.65
899 391 0.24
900 9 0.01
901 4 0.00
902 160 0.10
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
TGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCATCGGAGAACC
TGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
GCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
AAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTTACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATGGCATTGGCA
CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACATA
GAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGG
Found at i:19345528 original size:26 final size:26
Alignment explanation
Indices: 19345492--19345544 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19345482 GTTGACTTAG
*
19345492 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19345518 GCATACGGAGTTCATTCGCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19345544 G
1 G
19345545 AACGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19346599 original size:223 final size:223
Alignment explanation
Indices: 19346202--19346616 Score: 575
Period size: 223 Copynumber: 1.9 Consensus size: 223
19346192 GCTCGCCCAT
* * *
19346202 CCGCCCGCCCGCTCATCTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
1 CCGCCCGCCAGCTCATCTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCCAAGATCAG
* * * ***
19346267 TCTGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAGGGGGACCTGACCGATCCCTGGC
66 ACTGGACCGAGGGTTGCGGTAGCAGGATCAGTAGCACACAGAGGGGGACCCGACCGATCCCCAAC
* * *
19346332 TTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCG-TTCTGTGGGTTGACTTAGTC
131 TTACGCATCCCGCCCCTCTGGCCGGTAGAGCACCCGCACGCTCGTTTC-GCGGGTTGACTTAGTC
19346396 ACACCCAGGCATACGTAGTGTCCGCCCGC
195 ACACCCAGGCATACGTAGTGTCCGCCCGC
* *
19346425 CCGCCCGCCAGCTCGTTTCATCGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCCAAGAT-A
1 CCGCCCGCCAGCTCATCTCATCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCCAAGATCA
* * ** *
19346488 GGACTGGGCTGAGGGTTGCGGTAGCAGGATCAGTAGCACGTAGAGGGGGACCCGACTGATCCCCA
65 -GACTGGACCGAGGGTTGCGGTAGCAGGATCAGTAGCACACAGAGGGGGACCCGACCGATCCCCA
* * * *
19346553 ACTTGCGCATCCTGCCCCTCTGGCCGGTAGAGCACCTGCGCGCTCGTTTCGCGGGTTGACTTAG
129 ACTTACGCATCCCGCCCCTCTGGCCGGTAGAGCACCCGCACGCTCGTTTCGCGGGTTGACTTAG
19346617 GCGTACGGAG
Statistics
Matches: 166, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
222 2 0.01
223 161 0.97
224 3 0.02
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.21
Consensus pattern (223 bp):
CCGCCCGCCAGCTCATCTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCCAAGATCAG
ACTGGACCGAGGGTTGCGGTAGCAGGATCAGTAGCACACAGAGGGGGACCCGACCGATCCCCAAC
TTACGCATCCCGCCCCTCTGGCCGGTAGAGCACCCGCACGCTCGTTTCGCGGGTTGACTTAGTCA
CACCCAGGCATACGTAGTGTCCGCCCGC
Found at i:19347380 original size:26 final size:26
Alignment explanation
Indices: 19347350--19347402 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19347340 GTTGACTTAG
*
19347350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19347376 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19347402 G
1 G
19347403 ATTGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19347975 original size:732 final size:731
Alignment explanation
Indices: 19346554--19348028 Score: 2185
Period size: 732 Copynumber: 2.0 Consensus size: 731
19346544 TGATCCCCAA
* * * * *
19346554 CTTGCGCATCCTGCCCCTCTGGCCGGTAGAGCACCTGCGCGCTCGTTTCGCGGGTTGACTTAGGC
1 CTTGCACATCCCGCCCCTCTGGCCGGTAGAGCACCCGCACGCTCGTTTCACGGGTTGACTTAGGC
* * * *
19346619 GTACGGAGTTCATTCCCTGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCG
66 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCG
* * ** *
19346684 AGGGTTGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCTGTATTTTCCTCTGTCGGGGCA
131 AGGGTTGCGACAGCACATGCTGGGCTCAAGCATGTGCTGGTGCTGCATTTTCCTCACTCAGGGCA
*** ** * * *
19346749 CCATCGTTGGAGCATCGTCGGACATCCTAACCGACGGCATTGGGGTTTCGGTATCGGGGGGGGCC
196 CCATCGCCAGAGCATCACCGGACAACCTAACCGACGGCATTGGGGTTCCCGTATC-GGGGGGGCC
*
19346814 GGGGGGTGTGCACACATGATGTACGATGGGTGCTGATACTTGGCCCATATATTGGCCCCCTATCC
260 GGGGGGTGTGCACACATGATGTACGATGGGTGCTGATACTTGGCCCATATATTGGCCCCCTATAC
* *
19346879 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
325 CTCATCAAACCTCAAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
19346944 GTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
390 GTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTC
* * *
19347009 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTAAAAAAGGTT
455 GAGTTTTTAACTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACATCTAAAAAAGGTT
* * *
19347074 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAATGTTTCAAAAATCAT
520 GGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAT
* *
19347139 GAAAAATAGAAAACAAATTATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTTTG
585 GAAAAATAGAAAACAAATCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATG
*
19347204 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
650 AATTTACAAGCCATAAAAATGGCATT-GCACATAGAAATACGAAGATGTGCCTAAACCCACCTAC
19347269 CACCCTATCGATCCACGG
714 CACCCTATCGATCCACGG
* * *
19347287 CTTGCACATCCCGCCCCTCTGGCTGGCT-GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
1 CTTGCACATCCCGCCCCTCTGGCCGG-TAGAGCACCCGCACGCTCGTTTCACGGGTTGACTTAGG
*
19347351 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT-TGAACCAGAT
65 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAG-ACCAGAT
* * ** *
19347415 TGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACT-AGG
129 CGAGGGTTGCGACAGCACATGCTGGGCTCAAGCATGTGCTGGTGCTGCA-TTTTCCTCACTCAGG
* * *
19347479 GCACCATCGCCAGAGCTTCACCGGAGAACCTGACC-AGCGGCATTGGGGTTCCAACG-ATC-GGG
193 GCACCATCGCCAGAGCATCACCGGACAACCTAACCGA-CGGCATTGGGGTTCC--CGTATCGGGG
* * * *
19347541 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
255 GGGCCGGGGGGTGTGCACACATGATGTACGATGGGTGCTGATACTTGGCCCATATATTGGCCCCC
* *
19347606 TATACCTCATCAAACCTCAATAACTCATACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGC
320 TATACCTCATCAAACCTCAAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGC
*
19347671 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGACACAAAATCTTGTA
385 TGCCAGTAGCCATTAAAATGTCTGAAATGGGGACAC-TTTTTTCAAATGGACACAAAATCTTGTA
*
19347736 CACTTCGAGTTTTTAACTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACGTCT-AAA
449 CACTTCGAGTTTTTAACTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACATCTAAAA
* * * **
19347800 AAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAACTC-CTGAACCGCAAAAAGTTTTGA
514 AAGGTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAA
* * * * *
19347864 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
578 AAATCATGAAAAATAGAAAACAAATCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCA
19347929 TTGTATGAATTTACAAGCCATAAAAATGGCATT-CACATGGAGAAATACGAAGATGTGCCTAAAC
643 TTGTATGAATTTACAAGCCATAAAAATGGCATTGCACAT--AGAAATACGAAGATGTGCCTAAAC
19347993 CCACCTACCACCCTATCGATCCACGG
706 CCACCTACCACCCTATCGATCCACGG
19348019 CTTGCACATC
1 CTTGCACATC
19348029 TCGTCTCTAT
Statistics
Matches: 666, Mismatches: 66, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
730 5 0.01
731 1 0.00
732 368 0.55
733 279 0.42
734 12 0.02
735 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (731 bp):
CTTGCACATCCCGCCCCTCTGGCCGGTAGAGCACCCGCACGCTCGTTTCACGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCG
AGGGTTGCGACAGCACATGCTGGGCTCAAGCATGTGCTGGTGCTGCATTTTCCTCACTCAGGGCA
CCATCGCCAGAGCATCACCGGACAACCTAACCGACGGCATTGGGGTTCCCGTATCGGGGGGGCCG
GGGGGTGTGCACACATGATGTACGATGGGTGCTGATACTTGGCCCATATATTGGCCCCCTATACC
TCATCAAACCTCAAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCG
AGTTTTTAACTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACATCTAAAAAAGGTTG
GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACAAATCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGCACATAGAAATACGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGG
Found at i:19349359 original size:223 final size:223
Alignment explanation
Indices: 19348962--19349376 Score: 584
Period size: 223 Copynumber: 1.9 Consensus size: 223
19348952 GCTCGCCCAT
* * *
19348962 CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
1 CCGCCCGCCAGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCCAAGATCAG
* * * ***
19349027 TCTGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAGGGGGACCTGACCGATCCCTGGC
66 ACTGGACCGAGGGTTGCGGTAGCAGGATCAGTAGCACACAGAGGGGGACCCGACCGATCCCCAAC
* * *
19349092 TTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCG-TTCTGTGGGTTGACTTAGTC
131 TTACGCATCCCGCCCCTCTGGCCGGTAGAGCACCCGCACGCTCGTTTC-GCGGGTTGACTTAGTC
19349156 ACACCCAGGCATACGTAGTGTCCGCCCGC
195 ACACCCAGGCATACGTAGTGTCCGCCCGC
*
19349185 CCGCCCGCCAGCTCGTTTCATCGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCCAAGAT-A
1 CCGCCCGCCAGCTCATTTCATCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCCAAGATCA
* * ** *
19349248 GGACTGGGCTGAGGGTTGCGGTAGCAGGATCAGTAGCACGTAGAGGGGGACCCGACTGATCCCCA
65 -GACTGGACCGAGGGTTGCGGTAGCAGGATCAGTAGCACACAGAGGGGGACCCGACCGATCCCCA
* * * *
19349313 ACTTGCGCATCCTGCCCCTCTGGCCGGTAGAGCACCTGCGCGCTCGTTTCGCGGGTTGACTTAG
129 ACTTACGCATCCCGCCCCTCTGGCCGGTAGAGCACCCGCACGCTCGTTTCGCGGGTTGACTTAG
19349377 GCGTACGGAG
Statistics
Matches: 167, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
222 2 0.01
223 162 0.97
224 3 0.02
ACGTcount: A:0.17, C:0.31, G:0.30, T:0.22
Consensus pattern (223 bp):
CCGCCCGCCAGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCCAAGATCAG
ACTGGACCGAGGGTTGCGGTAGCAGGATCAGTAGCACACAGAGGGGGACCCGACCGATCCCCAAC
TTACGCATCCCGCCCCTCTGGCCGGTAGAGCACCCGCACGCTCGTTTCGCGGGTTGACTTAGTCA
CACCCAGGCATACGTAGTGTCCGCCCGC
Found at i:19350130 original size:26 final size:26
Alignment explanation
Indices: 19350100--19350152 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19350090 GTTGACTCAG
*
19350100 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAATCTAA
*
19350126 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCACAATCTAA
19350152 G
1 G
19350153 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAATCTAA
Found at i:19351896 original size:26 final size:26
Alignment explanation
Indices: 19351857--19351909 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19351847 GTTGACTTAG
19351857 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* *
19351883 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
19351909 G
1 G
19351910 ATCGATTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:19352790 original size:26 final size:26
Alignment explanation
Indices: 19352754--19352805 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19352744 TTGACTTAGT
* *
19352754 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
19352780 CATACAGAGTTCATTCCCAATCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
19352806 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAG
Found at i:19353683 original size:26 final size:26
Alignment explanation
Indices: 19353653--19353705 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19353643 GTTGACTTAG
*
19353653 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCAAGTCTAA
* *
19353679 GCATACGGAGTTCGTTCCAAGTCTAA
1 GCATACGGAATTCATTCCAAGTCTAA
19353705 G
1 G
19353706 ATTGGACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCAAGTCTAA
Found at i:19354585 original size:26 final size:26
Alignment explanation
Indices: 19354555--19354605 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19354545 GTTGACTTAG
19354555 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19354581 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
19354606 CGATCAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19354691 original size:902 final size:894
Alignment explanation
Indices: 19351524--19361543 Score: 12439
Period size: 902 Copynumber: 11.3 Consensus size: 894
19351514 AAATCGTGAA
** * *
19351524 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
* * * * *
19351589 GCCTAAACCCACCTACCACCCGACCGAGCCACGGCTTGTGCATCCCGTCTCTATGTCCAACTTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGTCCGACTTAG
* * * *
19351654 TGCCCGCCCGCTCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTAATTCCCAG
131 TG--TG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * ** * * * *
19351719 TCTAAGATCAGA-CCAGACCGAGGGTTATGGTAGTAGGATCGATAGCATGCAGAGAGGGACCCGA
190 TCTAAGATCAGATCGA-ATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGA
** * *
19351783 CCGATCCATGGCTTGCTCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
254 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
19351848 TTGACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
319 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
19351913 -GATTTGGACTGAGGGTTGTGCCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTC
384 AGA-CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
*
19351977 TTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA-CGACGGCATTGGGGTTCCGACG
448 TTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CG
* *
19352041 ATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTACAATGGGTGCTGGTACTTGGCCCTTATAT
512 ATC-GGGGGG-CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
19352106 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATGTTAC
575 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
19352171 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
640 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
19352236 TCTTGTACACTTCGAGTTTTTACCTG-ATTTTTTTTGCACATGACAACAAAAATACAAGGACCAC
705 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG--CATGCCAACAAAAATACAAGGATCAC
* * *
19352300 GTCTACCAAGTTTGGGGCCAAATCTCTTTCCGAAAAAATTTTAAAAAAATCTCGAACCGCAAAAA
768 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCTCGAACCGTAAAAA
*
19352365 GTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
832 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
19352428 AAGGGACCATTGTATGAATTTACAAGCCATAAAGATGGCATTGGCATGCAT-G-AATATAAAGAT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATGAAGAT
* * * *
19352491 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGT
64 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGTCCGACTT
* * * *
19352556 A--GTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCTAGTCTA
129 AGTGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *** * * * * *
19352619 AGATCAGACCGGA-CTGAGGGTTGCAATAGTAGGATCGATAGCACACAAAAGGGGACCCGATCGA
194 AGATCAGATCGAATC-GAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGA
* * * **
19352683 TCCCCGGCTTGCTCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGTGCGCTCGTTTCGTGGGTTGA
258 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * *
19352748 CTTAGTCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAAC
323 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** ** * * * *
19352813 CAGATTGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTACCGAATTTTTCTTCGT
388 TGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* ** * *
19352878 CGGGGCGCCATCGTCGGAGCATTGCCTGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGG
453 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGG
* *
19352943 GGGGATCGGGGGGGTGTACACACATGATGTGCGATGGGTGATGGTACTTGGCCCTTATATTGGCC
517 GGGG--CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
19353008 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
580 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
19353073 TGTTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
645 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
19353138 TACACTTCGAGTTTTTAGCTGAATTATTTTATGCATGGCAACAAAAATACAAGGATCACGTCTAC
710 TACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * *
19353203 CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAATTTCAA
774 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAA
* * * *
19353268 AAATCGTGAAAAATAGAAAATGAGTCATCTTGCTATGAAACTTCACGTGAAGGCTT
839 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
** * ** *
19353324 AAGGGACCATTGTATGAATTTACAAAACATAAAAGTGGCATTGGCACGCAAAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
* * * *
19353389 GCCAAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTATGTCCGAATTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGTCCGACTTAG
* *
19353454 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
131 TG--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * *
19353519 AGATTAGATCGGATCGAGGGTTGTAGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGACCGAT
194 AGATCAGATCGAATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGAT
* * * * * * *
19353584 CCTCAGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGTGCTCGCACGCTCGTTTCATGGGTTGAC
259 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * ** *
19353649 TTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCGTTCCAAGTCTAAGATTGGACA
324 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* ** ** * * *
19353714 AGACCGAGGGTTGCGTTAGCACATGCTACGCTCAGGCATGTGCTAGTGCCGCAATTTTCTTCGTC
389 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* *
19353779 GGGGCACCATCGTCGGAGCATCGCCGGAAAACCTGACCGACGGCATTGGGGTTCCAGCGATCGAG
454 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCG-G
* ** *
19353844 GGGGCTGGGGGGTGTGCGTACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
517 GGGGCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
19353909 CTATCGCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTG
582 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
19353974 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
647 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * **
19354039 CACTTCGATTTTTTAACTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAA
712 CACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
19354104 GTTTAGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAA
777 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
*
19354169 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTT
842 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
19354222 AAGGGACCATTGTAAGAATTTACAGGCCATAAAAATGGCATTGGAACATAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
* *
19354287 GCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCTGTCTCTATGTCCGACTTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGTCCGACTTAG
19354352 TGCCTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
131 TG--TGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * * *
19354417 TCTAAGATTGGATCGAATCGAGGGTTGCAGCCGCAGGATCGGTAGCACGCAGAGGGGGACCCGAC
190 TCTAAGATCAGATCGAATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGAC
* * * *
19354482 CGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCGCTCGCACGCTCGTTTCATGGGT
255 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
19354547 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTACGATCA
320 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
19354612 GACTGGACCAAGGGTTGGGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCAATTTTCTT
385 GACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
19354677 CGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
450 CGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGAT
* * *
19354742 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGGGATGGGTACTGGTACTTGGCCCTTATATTG
514 C-GGGGGG-CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * *
19354807 GCCCCCTATCACTCATCAAACCTCGATAACTCATACCCCCTTAAAGAGCATTTCAGATTTTACAG
577 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
19354872 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
642 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
19354937 TTGTACACTTCTAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
707 TTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
19355002 TACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAGTT
771 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTT
*
19355066 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTT
835 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
19355126 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT--CACATGCAGAAATATGAAGAT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT--AGAAATATGAAGAT
19355189 GTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTATGTCCGACTT
64 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGTCCGACTT
* *
19355253 AGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
129 AGTG--TGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * * * * *
19355318 AGTCTAAGATTGGATC-AGATTGAGGGTTGTGGCAGCAAGATCGGTCGCACGCAGAGGGGGACCC
188 AGTCTAAGATCAGATCGA-ATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCC
** ** * * * * * *
19355382 GGTCGATCCGTGACTTGCACATCCCG-TCCTCTGGTCGGCTGAGCGCTCGCACGCTCGATTCGTG
252 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * *
19355446 AGTTGACTTAGGCATATGGAGTTCATTCCCATTCTAAGCATACGGAGTCCATTCCCAGTCTAAGA
317 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** * * *
19355511 TTGGA-TCAGACCGAGGGTTGTGCCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
382 TCAGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * *
19355575 TCTTCGCCGGGGCAGCATCGTCGGAGCATCACCAAGAGAACCTGACC-AGCGGCATTGGGGTTCC
446 TCTTCGTCGGGGCACCATCGTCGGAGCATCACC-GGAGAACCTGACCGA-CGGCATTGGGGTTCC
** * * * * * *
19355639 AATGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATTGGTGATGGTACTTGGCCCTTAC
509 -GCGATCGGGGGGCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
19355704 ATTGTCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
573 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
19355769 ACAGGTTTGCTTCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
638 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
19355834 AATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTATGCAAGCCAACAAAAATACAAGGATCAC
703 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
19355899 GTCTACCATGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAG
768 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCTCGAACCGTAAAAA
*
19355964 GTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
832 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* ***
19356027 AAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
** * * * * *
19356092 GCCTAAACCCACCTACCACTTTATCAATCCACGGCTTGCGCATCTCGTCTCTCTGGT-CGGCATA
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTAT-GTCCGACTTA
* * * * * *
19356156 --GTGCCTGCCCGCCTGTTCATTTCGTCTGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCCAA
130 GTGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *** * *
19356218 GATC-GAACTGAATCGAGGGTTGCAGTAGCAGGATTGGCGGCACGTAGAGGGGGTCCCGACCGAT
195 GATCAGATC-GAATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGAT
* * ** *
19356282 CCCCGGCTTGCGCATCCCACCTCTCTGGCCGTTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGAC
259 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
19356347 TTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C---G----GACT
324 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * * **
19356391 -----GAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTATTCACC
389 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * **
19356451 GGGGCACCATCGTCAGAGGATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
454 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATC-GG
* *
19356516 GGGGCTGGGGGGTTGTGCACACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGG-CC
517 GGGGC-GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
19356580 TCTATCCCTCATCAAACCTAGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
581 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
19356644 GCTGCCAGTAGCAATTAAAGTGTTTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGT
646 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * **
19356709 ACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGACTAAA
711 ACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * * *
19356774 AAGTTTGGGGCCAAAATTCCTTCCCAAAAAATTTTCAAAAATCTAGAACTGCAAAAAGTTTCAAA
775 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
*
19356839 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
840 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* ***
19356894 AAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
* * * * * * * *
19356959 GCCTAAACCAACCTACCACCCTATCGGTCCACGACTTGCGCATGCCGTCTCTTTGGCTG-GTGTA
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGTCCGACT-TA
* * ** * * *
19357023 GAGCCCGCCCGCCCGCCCATTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCT
130 GTG--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * * *
19357088 AAGATTGGATCAGACT-GAGGGTTGCGGTAGCAGGATCAGA-AGCACGTAGAGGTGGACTCGGCC
193 AAGATCAGATC-GAATCGAGGGTTGCGGCAGCAGGATC-GATAGCACGCAGAGGGGGACCCGACC
* * *
19357151 GGTCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTCCGTGGGTT
256 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
19357216 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GGAGTCCATTCCCAGTCTAAGATCAG
321 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * *
19357280 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTC
386 ACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * *
19357345 GTCGGGGCACCATCGCCGGAGCATCACCTGAGAACCTGACCGATGGCATTGGGTTTCGGCGATCG
451 GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGCGATCG
* * * *
19357410 GGGGGCCCGGGGGGGTGTGCACACATGATGTGTGATAGCTGCTGGTACTAGGCCCTTATATTGGC
516 GGGGG--CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
19357475 CCCCTATCCCTCATCAAACCTTGAGAACTCATACCTCCTTAAAGAGCATTTGAGATTTTATAGGT
579 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
19357540 TTGCTCCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
644 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * *
19357605 GTACACTTCGAGTTTTTAACTGAATTTTTTTATGCTTGCTAACAAAAATACAAGGATCATGTCTA
709 GTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
19357670 -AAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC-CTAAACCTTAAAAAGTTTC
773 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTC
*
19357733 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
837 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* **
19357791 AAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACGCAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
* * * * * *
19357856 CCCTAAACCTACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCTCTAGGGCCGAC---G
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGTCCGACTTAG
* * * * * * *
19357918 TCATGCCCGCCCACCCGCTCATCTCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCTAATCTAA
131 T-GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * * * *
19357983 GATTGGACCGGACCGAGGGTTACGACAGTAGGATCGATAGCACGTAAAGGGGGACCCAACCGATC
195 GATCAGATCGAATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATC
* * * * *
19358048 CCCAGCTTGCTCAACCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCTTGGGTTGACT
260 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* *
19358113 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TC
325 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-
*** * * * *
19358177 GGACCGAGGGTTGCAAAAGCACATGCTAGGCTCGGGCATATGCTGGTGGCACATTTTTCTTCGTC
389 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * ** *
19358242 GGGCCACTATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGATTCGGCGATCGGG
454 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGG-TTCCGCGATC-GG
* * *
19358307 GGGGCCGGGGGGTGTG--CACATGATGTGTGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCC
517 GGGGCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
19358370 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTG
582 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * *
19358435 CTACTAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTA
647 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
19358500 CACTTTGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
712 CACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
19358565 AGTTTGGGGCCAAAACTCCTTCCGCAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAA
776 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * *
19358630 ATCATGAAAAATAAAAAATGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTT
841 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
***
19358684 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
* * * * * *
19358749 GCCTAAAGCCACCAACCACCCTATCGATCAATGGCTTGCGCATCCCGTCTCTCTAG-CCG--GT-
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTAT-GTCCGACTTA
* * * * * *
19358810 GTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCATAGGCATACAGAGTTCACTCTCTGTCTA
130 GT-GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * ** ** **
19358875 AGATCAGACCGGATCGAGGGTTGCGTCAGCAGGATCGACAGCTTGTGGAGGGGGACCCGGTCGAT
194 AGATCAGATCGAATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGAT
* * * * *
19358940 CCCCGACTTGCGCATCCCGCCCTTCTGGTCGGCTAAGCGCCCGTACGCTCGTTTCGTGGGTTGAC
259 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
19359005 TCAGGCATACGGATTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCAGA-T
324 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * ** ** *
19359069 CAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGACCATGTGCTGGTGGTGCATTTTTCTTCGC
389 -GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * *
19359134 CGGGTCATCATCGT-------T----GGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCAG
453 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGG-TTCCGCGATC-G
* ** ** * **
19359188 GGGGGTCGAGGGGGCATGCGGACATGATGTGCGATGAGTGCTGGTACTTGGCATTTAT-TGTGGC
516 GGGGG-CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT-TGGC
* * * * *
19359252 CGCTTATCCCTCATCAAACCTCAAGAAGTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
579 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
19359317 TTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
644 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * *
19359382 GTACGCTTCGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA-GAGGTATCACGTCA
709 GTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGG-ATCACGTCT
** * * * *
19359446 ACCAAGTTTGGTTCCAAAACTTCTTTCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTC
772 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
* * ** * * *
19359511 AAAAATCGTTAAAAATAGAAAATAAGTCATCTTGCCATGAAACTTAACGTGAAGGATT
837 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
19359569 AAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGAT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATGAAGAT
* * * *
19359632 GTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTTTAG-CCG--G
64 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTAT-GTCCGACT
* *
19359694 T-GTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGGTCATTCCCAGTC
128 TAGT-GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * ** *
19359758 TAAGATCAGA-CTGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACATAGAGGGGGACCC-AGT
192 TAAGATCAGATC-GAATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGA-C
* * *
19359821 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGTTCG-TTCGT---T
255 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
19359882 T-A---A-GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-T--C-G-----GA-C-
320 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
** * *
19359924 --C---A---AGGGTTGCGATAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
385 GACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * * * * * *
19359981 C-AC-AGGC-TCATCAT---TG--T---TGGAGAACCTGACCCG-CAGCGTTAGGGTTCTGACGA
450 CGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA-CCGACGGCATTGGGGTTCCG-CGA
*** * * * *
19360034 TCGGGGGGCCGAGGGATATGTGCACACATGATGTGTGATGGGTTCTGATACCTGGCCCTTATATT
513 TCGGGGGG-CG-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
19360099 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
576 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
19360164 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
641 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
19360229 CTTGTACACATCGAGTTTTTAGCTGAATTGTTTTGGGCATGCTAACAAAAATACAAGGATTACGT
706 CTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
19360294 CTACCAAGTTTGGGGCCAGAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
770 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
19360359 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
835 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
19360419 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACACAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
* * * * *
19360484 GCCTAAACCCACCTACCACCCTATCGATCGACAGCTTGCGCATCCCGTCTCTCTGGT-CGGCGTA
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTAT-GTCCGACTTA
* * * * *
19360548 --GT----GCCAGCCCGCTCTTTTCGTCGGTTGGCTTAGGCGTATGGAATTCATTCCCAGTCTAA
130 GTGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
19360607 GATCAGA-CCAGACCAAGGGTTACGGTAGCAGGATCGATAGCACGCAGTGAGGGACCTGGCCGAT
195 GATCAGATCGA-ATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGAT
* * * * * * *
19360671 CCCTGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCACACTCGATTCATGGGTTGAC
259 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * **
19360736 TTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAAAA
324 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * * * *
19360801 GGATCGAAGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGGGCCGCATTTTTCTTCGTC
389 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
*
19360866 GGGGCACCATCAACCGAGCATCACCGGAGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTT
454 GGGGCACCAT----C--G--T---CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGG-TT
* * * * * *
19360931 CGGTGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCTTT
507 CCGCGATCGG-GGGGCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
19360996 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAATTTACACCCCCTTAAAGAGCATTTGAGATT
571 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
19361061 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCAA
636 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
19361126 AAAATCTTGTACACTTCGAGTTCTTAGCTTAATTTTTTTGTGCAAGCCAACAAAAATACAAGGAT
701 AAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
19361191 CATGTCTACCAAGTTTGGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAATTCTCGAACCGTAA
765 CACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA
* ** ** * * *
19361256 AATGTTTTGAAAATTGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCATGTGAAAGCT
829 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
19361321 T
894 T
* *
19361322 AAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
* * * * * * *
19361387 GCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCATCTCTCTGGCCGGCATA-
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGTCCGACTTAG
19361451 -GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
131 TGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
19361515 ATCGGATCGGA-CTGAGGGTTGCGACAGCA
196 ATCAGATCGAATC-GAGGGTTGCGGCAGCA
19361544 CATGCTGGAC
Statistics
Matches: 7974, Mismatches: 939, Indels: 403
0.86 0.10 0.04
Matches are distributed among these distances:
846 144 0.02
847 10 0.00
848 4 0.00
849 17 0.00
850 504 0.06
851 8 0.00
852 2 0.00
853 1 0.00
854 1 0.00
855 25 0.00
856 2 0.00
857 1 0.00
858 1 0.00
859 2 0.00
860 2 0.00
862 1 0.00
863 1 0.00
865 2 0.00
866 3 0.00
867 335 0.04
868 178 0.02
869 50 0.01
871 48 0.01
872 140 0.02
873 12 0.00
874 3 0.00
875 3 0.00
876 26 0.00
877 2 0.00
878 2 0.00
880 2 0.00
881 50 0.01
882 44 0.01
883 12 0.00
884 13 0.00
885 585 0.07
886 2 0.00
887 1 0.00
888 2 0.00
890 1 0.00
891 1 0.00
892 228 0.03
893 755 0.09
894 247 0.03
895 17 0.00
896 553 0.07
897 646 0.08
898 428 0.05
899 209 0.03
900 401 0.05
901 369 0.05
902 795 0.10
903 649 0.08
904 356 0.04
906 2 0.00
907 75 0.01
908 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGTCCGACTTAG
TGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGATCGAATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCC
CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGG
ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
GGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGCGATCGGGGGG
CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
Found at i:19355493 original size:26 final size:26
Alignment explanation
Indices: 19355457--19355509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19355447 GTTGACTTAG
* * *
19355457 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
19355483 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
19355509 G
1 G
19355510 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:19357258 original size:25 final size:26
Alignment explanation
Indices: 19357223--19357274 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19357213 GTTGACTTAG
*
19357223 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
19357249 GCATA-GGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
19357274 G
1 G
19357275 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:19358152 original size:26 final size:26
Alignment explanation
Indices: 19358116--19358168 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19358106 GTTGACTTAG
19358116 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19358142 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19358168 G
1 G
19358169 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19358602 original size:893 final size:893
Alignment explanation
Indices: 19356351--19361543 Score: 6474
Period size: 893 Copynumber: 5.9 Consensus size: 893
19356341 GTTGACTTAG
* * *
19356351 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** ** * * **
19356416 CTTGGGCATGTGCTGGTGCCACATTTTTATTCACCGGGGCACCATCGTCAGAGGATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCACCGGAGCATCACCGGAGA
* * *
19356481 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTTGTGCACACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGG-TGTG-ACACATGATGTG
* * *
19356546 CGATGGGTGTTGGTACTTGGCCCTTATATTGG-CCTCTATCCCTCATCAAACCTAGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19356610 A-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19356674 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * *
19356739 TGCATGCCAACAAAAATACAAGGATCATGACTAAAAAGTTTGGGGCCAAAATTCCTTCCCAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
19356804 ATTTTCAAAAAT-CTAGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19356868 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19356933 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGGTCCACGACTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
* * * * * * *
19356998 GCATGCCGTCTCTTTGGCTGGTGTAGAGCCCGCCCGCCCGCCCATTCATTTCATCGGTTGGCTTA
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTA
* ** * * * *
19357063 GGCATACGGAGTTCATTCACAGTCTAAGATTGGATCAGACTGAGGGTTGCGGTAGCAGGATCAGA
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-GA
* * *
19357128 -AGCACGTAGAGGTGGACTCGGCCGGTCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
772 CAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
19357192 G-CTCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCCT-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19357249 GCATA-GGAGTCCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19357313 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCACCGGAGCATCACCGGAGA
* *
19357378 ACCTGACCGATGGCATT-GGGTTTCGGCGATCGGGGGGCCCGGGGGGGTGTGCACACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCC-GGGGGGTGTG-ACACATGATGTG
* * * * * *
19357442 TGATAGCTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAT
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19357507 ACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTCCCAGTAGCCACTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19357572 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19357637 TGCTTGCTAACAAAAATACAAGGATCATGTCTA-AAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
19357701 ATTTTAAAAAATCCTAAACCTTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19357766 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19357831 TTGGCACGCAGAAATATGAAGATGTCCCTAAACCTACCTACCACCCTATCGATCCACGACTTACG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
** * * * * *
19357896 CATCCCGTCTCTAGGGCCGACGTCA-TGCCCGCCCACCCGCTCATCTCGTCGGTTGGCTTAGCCA
648 CATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * * * *
19357960 TACGGAGTTCATTCCTAATCTAAGATTGGACCGGACCGAGGGTTACGACAGTAGGATCGATAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* ** * * *
19358025 CGTAAAGGGGGACCCAACCGATCCCCAGCTTGCTCAACCCGCCCCTCTGGCCGGCTGAGCGCCTG
777 CGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTG
*
19358090 CACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** *
19358142 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCAAAAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19358207 CTCGGGCATATGCTGGTGGCACATTTTTCTTCGTCGGGCCACTATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG-CACCATCACCGGAGCATCACCGGAGA
* *
19358272 ACCTGACCGACGGCATTGGGGATTCGGCGATCGGGGGGGCCGGGGGGTGTG-CACATGATGTGTG
130 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGACACATGATGTGCG
*
19358336 ATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
19358401 CCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTAAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
19358466 GGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
19358531 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGCAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
19358596 TTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGC
455 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
19358661 CGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
19358726 GGCATGCAGAAATATGAAGATGTGCCTAAAGCCACCAACCACCCTATCGATCAATGGCTTGCGCA
585 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
* * * *
19358791 TCCCGTCTCTCTAGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCATAGGCATAC
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * **
19358856 AGAGTTCACTCTCTGTCTAAGATCAGACCGGATCGAGGGTTGCGTCAGCAGGATCGACAGCTTGT
715 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGT
* * * * * * * *
19358921 GGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCTTCTGGTCGGCTAAGCGCCCGTAC
780 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCAC
* *
19358986 GCTCGTTTCGTGGGTTGACTCAGGCATACGGATTTCATTCCCAGTCTAA
845 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19359035 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** ** * * * *
19359100 CTCGACCATGTGCTGGTGGTGCATTTTTCTTCGCCGGG--TCATCATC---G--T---TGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCACCGGAGCATCACCGGAGAA
* * * *
19359155 CCTGACCGACGGCATTGGGGTTTCGGCGATCAGGGGGGTCGAGGGGGCATGCG-GACATGATGTG
131 CCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCG-GGGGG--TGTGACACATGATGTG
* ** * * * *
19359219 CGATGAGTGCTGGTACTTGGCATTTAT-TGTGGCCGCTTATCCCTCATCAAACCTCAAGAAGTCA
193 CGATGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19359283 GACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19359348 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGCGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** * *
19359413 GTGCATGCCAAAAAAAATA-GAGGTATCACGTCAACCAAGTTTGGTTCCAAAACTTCTTTCGAAA
387 GTGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * ** *
19359477 AAATTTTAAAAAAT-CTCGAACTGCAAAAAGTTTCAAAAATCGTTAAAAATAGAAAATAAGTCAT
451 AAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
19359541 CTTGCCATGAAACTTAACGTGAAGGATTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
19359606 GCATTGGCATGCAAAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * * * *
19359671 GCGCATCCCTTCTCTTTAGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGG
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
19359736 CATACGGAGGTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGACAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * *
19359801 CACATAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCC
775 CACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
19359866 CGCACGTTCG-TTCGT---TT-A---A-GCATACGGAGTTCATTCCCAGTCTAA
840 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
19359911 G-AT-C-G-G---A-T--C-G-----GA-C----C--A---AGGGTTGCGATAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
19359950 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-ACAGGC-TCATCA---TTG--T---TGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCACCGGAGCATCACCGGAGAA
* * * * **
19360005 CCTGACCCG-CAGCGTTAGGG-TTCTGACGATC-GGGGGGCCGAGGGATATGTGCACACATGATG
131 CCTGA-CCGACGGCATTGGGGTTTC-GGCGATCGGGGGGGCCG-GGG-GGTGTG-ACACATGATG
* * * *
19360067 TGTGATGGGTTCTGATACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19360132 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19360197 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTGTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
19360262 TGGGCATGCTAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAGAACTCCTTTCAAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
19360327 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19360392 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19360457 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGAC-AGCTT
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTT
* * *
19360521 GCGCATCCCGTCTCTCTGGTCGGCGTAGT----GCCAGCCCGCTCTTTTCGTCGGTTGGCTTAGG
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
19360582 CGTATGGAATTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAGGATCGATAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * * *
19360647 CACGCAGTGAGGGACCTGGCCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACC
775 CACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * * *
19360712 CGCACACTCGATTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
840 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
19360766 GCATACGGAGTTCATTCCCAGTCTAAGATCAAAAAGGATCGAAGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19360831 CTTGGGCATGTGCTGGGGCCGCATTTTTCTTCGTCGGGGCACCATCAACCGAGCATCACCGGAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG------C-A-C---CATCACCGGAGC
* * * *
19360896 ATCACCGGAGAACCTGACCGATGGCATTGGGGTTTCGGTGATCGGAGGGGCCGGGGGGTGTGCGC
119 ATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTG-AC
* *
19360961 ACATGATGTGCGATGGGTGCTGGTAGTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTC
183 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
19361026 AAGAATTTACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
248 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * *
19361091 TGTATGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTCTTAGCTT
313 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
19361156 AATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGGCCAAAACTC
378 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTC
* * * ** **
19361221 CTTCCCAAAAAATTTT-AAAAATTCTCGAACCGTAAAATGTTTTGAAAATTGTGAAAAATAGAAA
442 CTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * * *
19361285 ACGGGTCGTCTTGCCATGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGGC
506 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
19361350 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
571 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
19361415 CCATGGCTTGTGCATCCCATCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGT
636 CCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
19361480 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCA
701 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
19361544 CATGCTGGAC
Statistics
Matches: 3724, Mismatches: 474, Indels: 185
0.85 0.11 0.04
Matches are distributed among these distances:
846 146 0.04
847 4 0.00
848 3 0.00
849 18 0.00
850 514 0.14
851 9 0.00
853 1 0.00
854 1 0.00
855 26 0.01
856 2 0.00
857 1 0.00
858 1 0.00
859 2 0.00
860 2 0.00
862 1 0.00
863 1 0.00
865 2 0.00
866 2 0.00
868 1 0.00
869 1 0.00
871 2 0.00
872 2 0.00
873 1 0.00
874 1 0.00
875 2 0.00
876 26 0.01
877 1 0.00
878 1 0.00
880 1 0.00
881 50 0.01
882 45 0.01
883 7 0.00
884 10 0.00
885 592 0.16
887 1 0.00
889 1 0.00
890 5 0.00
892 220 0.06
893 678 0.18
894 132 0.04
895 27 0.01
896 63 0.02
897 396 0.11
898 156 0.04
900 1 0.00
902 240 0.06
903 240 0.06
904 11 0.00
907 74 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCACCGGAGCATCACCGGAGAA
CCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGACACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA
GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19359038 original size:26 final size:26
Alignment explanation
Indices: 19359009--19359061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19358999 GTTGACTCAG
*
19359009 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19359035 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19359061 G
1 G
19359062 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19360770 original size:26 final size:26
Alignment explanation
Indices: 19360740--19360792 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19360730 GTTGACTTAG
19360740 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
19360766 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19360792 G
1 G
19360793 ATCAAAAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19360895 original size:11 final size:11
Alignment explanation
Indices: 19360881--19360905 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
19360871 ACCATCAACC
19360881 GAGCATCACCG
1 GAGCATCACCG
19360892 GAGCATCACCG
1 GAGCATCACCG
19360903 GAG
1 GAG
19360906 AACCTGACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.32, G:0.32, T:0.08
Consensus pattern (11 bp):
GAGCATCACCG
Found at i:19363249 original size:902 final size:900
Alignment explanation
Indices: 19361488--19365791 Score: 5609
Period size: 902 Copynumber: 4.8 Consensus size: 900
19361478 GTTGGCTTAG
* * *
19361488 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTGCGACAGCACATGCTGGG
*
19361553 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * **
19361618 ACCTTATCGACAGCATTGGGGTTCCGATGATCGGGGGGTCCGAGGGGTGTGCGCACATGATGTAT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
* *
19361683 GATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19361748 CCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGTTACCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19361813 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGG
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
19361878 GCATGCCAAGAAAAATACAAGGATCACGTCTACCATGTTTGGGGACAAAAATCCTTCCAAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * *
19361943 TTTAAAAAAATC-CTGAACCGTAAAATGTTTCGAAAATCATGGAAAATAAAAAACGAGTCGTCTT
454 TTTAAAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19362007 GCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
19362072 TTGGCATGCAGAAATATGAAGATGTGCCTAAACACAGCTACCACCCTATCAATCAATGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
19362137 CATCCCGTCTCTCTGGCCGGCGTAGTACCCCCCCGCCCGCTCGCTCGCTCGTTTCATCAGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGATCGTTCGTTTCGTCAGTTGGC
* * * *
19362202 TTAGGCATACGGAGTTCATTCCTAATCTAAGATCAGACTGGACCAAGGGTTGTGGTAGCA-GATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGTAGCAGGATC
* * * * * **
19362266 GGTAGCATGCAAAGAGGGACCCCACCGATCCCC-AGCTTGCGCATCCCGCCCCTCCGGTTGGCTG
778 GGCAGCATGCAGAG-GGGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGGCCGGCTG
** * * *
19362330 AGTGCCCGCAAACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCTCAGTCTAA
841 AGCCCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19362390 GAATACGAAGCTCATTCGCAGTCTAAGATCGGACCAGATCGAGGGTTGGGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGACAGCACATGCTGGG
* * * * *
19362455 CTCGGGCATGCGGTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCATCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
19362520 ACCTGACCGGTGGCATTGGGGTTCCGATGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* *
19362585 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTTACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19362650 CCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19362715 GGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGATGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
19362780 GCATGCCAACAAAAATGCAGGGATCATGTCTACCAAGATTGGGGCCAAAACTCATTCCAAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * * * *
19362845 TTTTAAAAAATCCCCAACCATAGAAA-TTCTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 TTTAAAAAAATCTCGAACCGTAAAAAGTT-TCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
19362909 GCCATGATATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
19362974 TTGGCATGCAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
19363039 CAACCCGTCTCTTTGGCCGGCGTAGTGCCTGCCCGCTCGCCCGATCGTTCGTTTTGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGATCGTTCGTTTCGTCAGTTGGC
* ** ** *
19363104 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGATGAA-GGTTGTGGTAGTAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGTAGCAGGATC
* * * * *
19363168 AGCAGCATGCAGAGGCGGACCCAATCGATCCTCGACTTACGCATCCTGCCCCTCTGGCCGGCTGA
778 GGCAGCATGCAGAGG-GGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* ** * *
19363233 GCCCCCGTACACTCGTTTTATGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAA
842 GCCCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
19363292 GCATATGGAGTTCATACCCAGTCTAAGATCGGACCAGACTGAGGGTT-ATAGCAGCACATGCTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTGCGA-CAGCACATGCTGG
* * * *
19363356 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTT--T-GGCG-A--A--G-C--ACCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
19363410 AACCTGACAGTCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGTGTTCGCACATGATGTGC
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
19363475 GATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19363540 CCCCCTTAAAGAGCATTTGATATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19363605 GGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19363670 GCATGGCAACAAAAATACAAGGATCACGTCT----AGTTTGGGGCCGAAACACCTTCCTAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
* * * * *
19363731 TTTTAAAAAAA-CTTGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACAAGTCGTCTT
453 ATTTAAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
19363795 GTCATGAAACTTCATGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
19363860 TTGGTAGGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
19363925 CATCCCGTCTCTCTGGCCGGTGCAGT-GCTCGCCCGCTCGCCTTTCCGCCTGCCCGCCTTCCCGC
648 CATCCCGTCTCTCTGGCC-G-GC-GTAG-T-G--C-C-CG------C-CC-GCCCG----CCCGA
* * * *
19363989 TCGCCCGCCTTCCCGCTCGTTTTGTTAATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
692 T----CG---T-----TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * ***** * * * * *
19364054 TTGGATCGGACCAAGGGTTCCCACAGTAGGATCGACAGCATGGAGAGGGTGAGCCGACCAATCCC
745 TCGGACCGGACCAAGGGTTGTGGTAGCAGGATCGGCAGCATGCAGAGGG-GACCCGACCGATCCC
* * * *** * *
19364119 CGGCTTGCGCATCCTGCCCCTCTGGCCTGCTTAATGCCCGCACGCTCTTTTCGTGGGTTGACTTA
809 CGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCCCCCGCACACTCGTTTCGTGGGTTGACTTA
* *
19364184 GGCATAC-AAGTTCATTCCTAGTCTAA
874 GGCATACGGAGTTCATTCCCAGTCTAA
* *
19364210 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACATCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGACAGCACATGCTGGG
* * * * *
19364275 CTCGAGG-TTTTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
65 CTCG-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
19364339 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGTGGGGCCGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTG
*
19364404 CAATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19364468 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19364533 GTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
19364598 AGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
19364663 ATTTAAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCCTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTAAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
19364728 GCCATGAAACTTCACATGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
19364793 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
19364858 CATCCCGTCTCTCTAGTCGGCGTAGTGCCCACCCGCCCGCCC-A-C--TCGTTTCGTC-GTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGATCGTTCGTTTCGTCAGTTGGC
* * ** **
19364918 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGTAGCAAAATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGTAGCAGGATC
* ** * *
19364983 GGTAGCATGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCAT-CTCGCCCTTCTGGCCGGCTG
778 GGCAGCATGCAG-AGGGGACCCGACCGATCCCCGACTTGCGCATCCT-GCCCCTCTGGCCGGCTG
*
19365047 AGCCCCCGCACACTCG-TTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 AGCCCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
19365106 GCATACGGAGTTCATTCGTAGTCTAAGATCGAACCAGACCAAGGGTTGCGATAACACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGACAGCACATGCTGGG
* * * * *
19365171 CTTGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
19365236 ACCTGACCAGCGGCATTGGGGATCTGGCGATTGGGTGGGCCGGAGGGGGTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCC-G-GGGGGTGTGCGCACATGATGT
*
19365301 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19365366 CACCCCCTGAAAAAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTGAAA-TGTCTAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTGAA
* * *
19365430 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAGTTTTTAGCTGAATTTATT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19365495 TGTGCATGTCAACAAAAATACAAGGATCACATCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
19365559 AAATTTAAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAATAATAGAAAATGAGTCGTC
451 AAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
19365624 TTGCCGTTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19365689 CATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
19365754 CGTATCCCGTCTCTCTAGCCGAAGTTGTGCCCGCCCGC
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
19365792 TGCCCACCCG
Statistics
Matches: 2969, Mismatches: 357, Indels: 156
0.85 0.10 0.04
Matches are distributed among these distances:
886 197 0.07
887 18 0.01
888 3 0.00
889 3 0.00
890 233 0.08
891 46 0.02
892 1 0.00
893 2 0.00
894 1 0.00
895 27 0.01
896 277 0.09
897 13 0.00
898 288 0.10
899 191 0.06
900 5 0.00
901 20 0.01
902 856 0.29
903 3 0.00
906 5 0.00
907 1 0.00
910 2 0.00
913 4 0.00
917 5 0.00
918 150 0.05
919 100 0.03
920 1 0.00
921 3 0.00
922 1 0.00
924 1 0.00
925 1 0.00
926 2 0.00
927 2 0.00
929 227 0.08
930 60 0.02
931 3 0.00
932 17 0.01
933 200 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGCGACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TAAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGATCGTTCGTTTCGTCAGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGTAGCAGGATCGGC
AGCATGCAGAGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCCC
CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19363295 original size:26 final size:26
Alignment explanation
Indices: 19363266--19363318 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19363256 GTTGACTTAG
*
19363266 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATACCCAGTCTAA
** *
19363292 GCATATGGAGTTCATACCCAGTCTAA
1 GCATACAGAATTCATACCCAGTCTAA
19363318 G
1 G
19363319 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATACCCAGTCTAA
Found at i:19364005 original size:16 final size:16
Alignment explanation
Indices: 19363962--19364007 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
19363952 CTCGCCCGCT
*
19363962 CGCCTTTCCGC-CTGCC
1 CGCCTTCCCGCTC-GCC
19363978 CGCCTTCCCGCTCGCC
1 CGCCTTCCCGCTCGCC
19363994 CGCCTTCCCGCTCG
1 CGCCTTCCCGCTCG
19364008 TTTTGTTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
16 27 0.96
17 1 0.04
ACGTcount: A:0.00, C:0.59, G:0.20, T:0.22
Consensus pattern (16 bp):
CGCCTTCCCGCTCGCC
Found at i:19364224 original size:26 final size:25
Alignment explanation
Indices: 19364185--19364236 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
19364175 GTTGACTTAG
*
19364185 GCATACAAGTTCATTCCTAGTCTAA
1 GCATACAAGTTCATTCCCAGTCTAA
19364210 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACA-AGTTCATTCCCAGTCTAA
19364236 G
1 G
19364237 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (25 bp):
GCATACAAGTTCATTCCCAGTCTAA
Found at i:19365109 original size:26 final size:26
Alignment explanation
Indices: 19365080--19365132 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19365070 GTTAACTTAG
19365080 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
19365106 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19365132 G
1 G
19365133 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19366831 original size:26 final size:26
Alignment explanation
Indices: 19366795--19366847 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19366785 GTTGACTTAG
19366795 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19366821 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19366847 G
1 G
19366848 ATTGAACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19366944 original size:11 final size:11
Alignment explanation
Indices: 19366928--19366956 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
19366918 GTCAGGGCAA
19366928 CATCGCCGGAG
1 CATCGCCGGAG
19366939 CATCGCCGGAG
1 CATCGCCGGAG
19366950 CATCGCC
1 CATCGCC
19366957 AGAGAACCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.41, G:0.31, T:0.10
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:19367734 original size:26 final size:26
Alignment explanation
Indices: 19367705--19367758 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
19367695 TGGGTTGACT
*
19367705 TAGGCATA-AGGAGTTTATTCCCAGTC
1 TAGGCATACA-GAGTTCATTCCCAGTC
19367731 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
19367757 TA
1 TA
19367759 AGATCGGATC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:19368641 original size:26 final size:26
Alignment explanation
Indices: 19368612--19368664 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19368602 GTTAACTTAG
*
19368612 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19368638 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19368664 G
1 G
19368665 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19370887 original size:904 final size:900
Alignment explanation
Indices: 19365879--19377764 Score: 14762
Period size: 903 Copynumber: 13.3 Consensus size: 900
19365869 TCCCCGGGAT
* *
19365879 GCACGC-CTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAC-GAAG
1 GCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AG
* * * * * *
19365942 TTCATTCCCAATCTAAGATCGAACTGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGAGCATG
64 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
19366007 TGCTGGTGCCACATTTTTCTTCATCGGGGCACCAACGCCGGAGCATCGTC-AAGAACCTGACCGA
129 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA
*
19366071 CAGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
194 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
19366135 GGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACA-CCCCTTGAA
259 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AA
* * * *
19366199 AGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAACGAGGACACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * * *
19366264 TTTTCAAATGGTCTCAAAATCTTGTACACCTCAAGTTCTTAGCTTAATTTTTTTGCGCATGCCAA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
** * * *
19366329 CAAAAATACAAGGATCACGTCTATGAAGTTTGGGGCCGAAACGCCTT-TCGAAAAAATTGTAAAA
453 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAA
* * *
19366393 AATCTCGAACAGCAAAAAGTTTC-----T--TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
517 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
19366451 CTTCACGTGAAGGCTTAAGGGACCATTTTTTGAATTCATAAGCCATAAAAATGGCATTGGCACGC
582 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * *
19366516 AGAAATATGAAGATGTGCCGAAACCCACCTACCACCATATCGATCGACGGCTTGCGCATCCCATC
647 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
19366581 TCTCTAGCCGGCGT-GTG-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
712 TCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** * * ** * ** *
19366644 AGTTCATTCCCAATCTAAGATTGGACCGGACTGAGGGTTGTGGCTGCAAAATCGGCAGCATGCAG
777 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAG
* * * *
19366709 AAGGGGACCC-AGCCGATCCCCGGCTTACGCATCCCGCCCTTCTGGCCAGCTGAGCGCCC
842 AGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
19366768 GCACACTCGCTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * * * * *
19366833 CATTCGCAGTCTAAGATTGAACCTGACCAAGGGTTGCGGCAACACATGCTAGGCTTGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
19366898 CTGGTGTCGCATTTTTCTTCGTCAGGGCAACATCGCCGGAGCATCGCCGGAGCATCGCCAGAGAA
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT---C---G--TCG---GAGAA
* * * * * *
19366963 CCTGACC-AGCGGCATTGGGGATCTGGTGATTGGGTGGGCCGGGGGGTGTGCGCACATGATGTAC
185 CCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
19367027 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
249 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19367092 CCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAATAGCCATTAAAGTGTCTGAAATA
314 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
19367157 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
379 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* **
19367222 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
444 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* ** * *
19367287 TTTTAAAAAAT-CTGAACCGTAAAAAGTTTTGATAATAGTGAAAAATAGAAAACGAGTCGTCTTG
509 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
19367351 CCATGAAACTTCACTTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGTCATAAAACAT-GCA
574 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA-ATGGCA
* * * * * *
19367415 TTGGCAAGCAAAAATATGAAGATGTACGTAAACCCACCTACCACCCTATCGATCCACGACTTGCA
638 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
19367480 CATCCCTTCTCCCTAGTCGGTGTAGTGCCCACCCGCCCACCCGCCCGCTTGTTTCGTCGGTTGGC
703 CATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* *
19367545 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
765 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATC
** * * * * * * * * *
19367610 GATAGCACGCAGAGTGGGACCTGGCCAATCTCCAGTTTGCGCATCCCTCCCCTCTGGCCGGTTGA
830 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
19367675 GCGCCC
895 GCGCCC
* * * * *
19367681 GCATGCTCGTTCCGTGGGTTGACTTAGGCATAAGGAGTTTATTCCCAGTCTAGGCATACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * * * *
19367746 CATTCCCAGTCTAAGATCGGATCAGACCAAAGGTTGCGGTAGAACATGCTGGGCTCAGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
19367811 CTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATC-ACTGGAGAACCTAACCGGC
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGAC
* * * *
19367875 GGCATTGAGGTTTCGGTGATCGGGGGGGCCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCT
195 GGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
19367940 GGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
259 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
19368005 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGAGACACTTT
324 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
19368070 TTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTAAATATTTTTGTGCAAGCCGAC
389 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
19368135 AAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAA
454 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAA
* *
19368199 ATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
518 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * *
19368264 TTGACGTGAAGGCTTAAGGGACTATTTTATGACTTTACAAGCCATAAAAATGGCATTGGCACGTA
583 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
19368329 GAAATATGAAGATGTACCTAAACCCACCTACAATCCTATCGATCCACGGCTTGCGCATCCCGTCT
648 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * *
19368394 CTCTGGCCGGTGTAGTGACCACCTGCTCGCCCGTCCGCTTGTTTCATCGGTTGGATTAGGTATAC
713 CTCTGGCCGGCGTAGTG-CC-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * ** * * * *
19368459 GGAGTTCATTCACAATCTAAGATCAGGCCGGATCGAGGGTTGTGGCAGCATGATCGGTAGCATGG
775 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGC
* * ** ** * * * * *
19368524 AGAGGGGGACTCGGCCGATCCCTAGCTTGCTTATCCTGCCCCCCTGGCCGACTGGGCGCCT
840 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
19368585 GCACGCTAGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * *
19368650 CATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGGCTCAGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * *
19368715 CTCGTGCCGTATTTTTCTTCGTCGGGGCACCA---T-----C--C-TCGGAGAACCTGACCGATG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
* ** ** *
19368769 GCATTAGGGTTCCAACGATCGACGGGGCC-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
196 GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * *
19368833 TACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTTGTGAACTCACACCCCCTTAAAGG
261 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
19368898 GCGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
326 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
19368963 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
391 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** * *
19369028 AAATGTAAGGATCACGTCTACCAAGTTTAGGGG-CAAAACTCCTTCCGAAAAAATTTAAAAAAAT
456 AAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
* * ** * *
19369092 CTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTT
520 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
19369157 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCAAA
585 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * *
19369222 AATGTGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCAACCCGTCTTT
650 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
19369287 CTGGCCGACGTAGT-----GCCCGCCCGCCCGCTTGTTTCGTTGGTTGGCTTAGGTATACGAAGT
715 CTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
** * ** *
19369347 TCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCTGGATCGATAGCACGTAGAGG
780 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGG
** * * *
19369412 GGGATGCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGTCC
845 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * **
19369468 GCACACTCGTTTCGTGGGTTGACTTAGGCATCCGGAGTTCATTCCTAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * *
19369533 CATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGGAGCACATGCTGGGCTTGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* ** * * * *
19369598 CTGGTGCCGTATTTTTCTTCACCAGGGTACCATCGTCGGAGCATCGCCAGAGAACCTTG-CCGAC
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC-TGACCGAC
* * * *
19369662 GGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGTGTGATGGGTGCT
195 GGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
19369727 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAAGTCACACCCCTTTAAA
259 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
19369792 GAGCATTTGAGATTTGACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
324 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
19369857 TTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTGCGCATGCCAAC
389 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * * *
19369922 AAAAATATATGGATCATGTATACGAAGATTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
454 AAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* *
19369986 ATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAC
518 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
19370051 TTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
583 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
19370116 GAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTTT
648 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * *
19370181 CTCTGGTCGGTGTAGTGCCCGTACGCCCGCGCGGCCACTCGTTTCGTTGGTTGGCTTAGGCATAC
713 CTCTGGCCGGCGTAGTGCCC---CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * * **
19370246 GGAGTTCATTCCCAGTCTAGGATCAGATCAGACCAAGGTTTATGGCAACAAGATCAGCAGCACAT
775 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGC
* * * * * *
19370311 AGAGGGGGACCCAACCGATCCCCGGCTTACTCATCCCACCCCTCTGGCCGCCTGAGCACCC
840 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
19370372 GCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTTCTAGTCTAAGCATAAAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * *
19370437 CATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
19370502 CTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCATCAGAGAACCTGACTGGCG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
* * * * *** * ** *
19370567 GTATTGGGGTTTCGGTGATCTGGGGTTTCGGCGATTGTGCACACATGATGTGCGATGGGTGCTGG
196 GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
19370632 TACTTGGCCCTTATTTTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
261 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
19370697 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAATGGGGACACTTTTT
326 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
19370762 TCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
391 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
19370827 AAATACAAGGATCACGTCTACCACGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAATC
456 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
*** * *
19370892 TTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
521 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * *
19370957 ATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAAAA
586 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
19371022 ATGTGATGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
651 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
19371087 TGGCCGACGTAGT-----GCCCGCCCGCCCGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTT
716 TGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * * * * **
19371147 CATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCAGCAGCAGGATTGGCAGCATGTGGAGGG
781 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * *
19371212 GGACCCAACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCC
846 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
19371267 GCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTA-TGCAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGT
* * * * *
19371331 TCATTCCCAGTCTAAGATCAGACCGGATCGAGAGTTGCGGGAGCACATGCTGGGCTCGAGCATGT
65 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * ** *
19371396 GCTGGTGCCGTATTTTTCTTCG-CTAGGGTACCATCGTCGGAGCATCGTCGGAGAACATTTCCGG
130 GCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA
* * *
19371460 CGGCATTAGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGTGCGATGGGTGC
194 CGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
19371525 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * **
19371590 AGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAATGTCTAAAATGGAAACACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
19371655 TTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TCTTTTAGCTGAATTTTTTTGTGCATGCCA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT-TTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * *
19371719 GA-AAAAATATATGGATCATGTCTACCAAGTTTGGGGCCATAGCTCTTTCTGAAAAAATTTTAAA
452 -ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * *
19371783 AAATCCCGAACCGTATAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
516 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
19371848 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
581 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
** *
19371913 CAGAAATATGAAGATGTGCCTAAATTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCT
646 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
19371978 TTCTCAGGCTGGCGTAGTG-CCCGCCCGCCCGCGTGTCCACTCGTTTCGTTGGTTGGCTTAGGCA
711 CTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGC----CCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
19372042 TACGGAGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCA
772 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCA
* *** * * *
19372107 CGCAAAAAAGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGCTGGCTGAGCGCCC
837 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
19372171 GTACGCTCATTTCATGGGTTGACTT-----T---G-G--CA-T---A--C---G-----A-AGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * * * * * *
19372210 TATTCCCAGTCTAAGATCGGTCTGGACTGAGGGTTACGACAGCACATACTAGGCTCCGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * * * * *
19372275 CTGGTGTCACTTTTTTTTTCATCGGGGCACCATCGTCGAAGCATCGTCGGAGAGCTTGACCGACG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
* * ** * * *
19372340 GAATTGGGGTTCCGACGATCGGGGGAACCGAGGGGTGTGCGTAGATGATGTGCGATGGGTGCTGG
196 GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
19372405 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
261 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * ** * *
19372470 GGATTTGAGATTTTATAGGTTTGCTATCGGTAGCCATTAAAGTGTC-GAAATGGAGACACTTTTT
326 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * * *
19372534 TCAAATGGTCCCAAAATCTAGTACACTTCAAGATTTTAGCTGAATGTTTTTGTGCAAGCCAAAAA
391 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* ** ** * *
19372599 AAAGACAAGGATCACACCTACCAAGTTTGGGGTGAAAAATCCTTCCGAAAAAATTTTAAAAAATC
456 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
* *
19372664 CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
521 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
19372729 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
586 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* *
19372794 ATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGACTTGCGCATCCCGTCTCTC
651 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
19372859 TAGCCAGCGTAGTGCCTGCCCGCCCGCCTGCCAGCTCGTTTCGTCGGTTGGCTTTGGCATACGGA
716 TGGCCGGCGTAGTG-C--CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** * * * * * *
19372924 GTTTATTCCCAGTCCAAGATTGGACCAGGCTGAGGGTTACAGTAGTAGGATCGACAGCACGCAGA
778 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGA
* *
19372989 GGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCT-AGGCGCCC
843 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-GCGCCC
* * ** *
19373047 GCTCGCTCGTTTCATGGGTTGACTTAGGTGTGCGGAGTTCATTCCCAGTCTAAGCATAC-GAAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGT
*
19373111 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGT
65 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * ***
19373176 GCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGTTCAACCTGACCGAC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAC
* * * * * *
19373241 GGCATTGGGGTTCCAGCTATC-AGGGGGCCGGGGGGTGTGCACACATGATGTACGATGGGTGCTA
195 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
19373305 GTACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAACCCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
19373370 AGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * ** **
19373435 TTCAAATGGTCACAAAATCTTGTACAGTTCAAGTTTTTAAATGAATTTTTTT-TGCACACCAACA
390 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* **
19373499 AAAATAAAAGGATCACGTCTACCAAGTTTGGGGATAAAACTCCTTCTGAAAAAATTTTAAAAAAT
455 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
* ** * *
19373564 CACGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTT
520 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
19373629 CACGTGAAGGCTTAAGGGACCA---T-T---TTTATAAGCCATAAAAATGACATTGGCATGCAGA
585 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
19373687 AATATGAAGATGTGCCAAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
650 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
19373752 CTAGCCGGCATAGTG-CCCGCCCGCCCTCCCGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGT
715 CTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
** * * ** * * * * * *
19373816 TCATTCTTAGTCTATGATCAGACCAAACCGAGGGTTGTGGCAGTAGGATCAGCAACATGTAGAAG
780 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGG
* * * **
19373881 GGGACCCGATCGATCCCCGGCTTACGCATCCCGCCTCTCTGGCCGGCTGAATGCCC
845 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
19373937 GCACGCTCATTCCGTGGTTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * *
19374002 CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCCGACATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * * *
19374067 CTGGTGCCACTTTTTTCTTCATTGGGGCACCATCGCCGGAGCGTCGTCGGAGAACCTGACCGACG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
** * *
19374132 GCATTGGGGTTCCGATGAT-GGGGGGGATCGGGGGG-GTGCGCACATGATGTGCGTTGGGTGCTG
196 GCATTGGGGTTCCGGCGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
19374195 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
19374260 AGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
19374325 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAACA
390 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* **
19374390 AAGATACAAGGATCACGTCTAAAAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
455 AAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAA
* ** * * *
19374455 ATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACTAGTCATCTTGCCATGAAAC
518 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
19374520 TTCACGTGAA-GTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
583 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
19374584 AAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
648 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
19374648 CTCTGGCCGGAGTAGTGCTCGCCCGCCCTCCCACCCGCTCGATTCGTCAGTTGGCTTAGGCATAC
713 CTCTGGCCGGCGTAGTG--C-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * ** * *
19374713 AGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTACAGCAGCAGGATCGGCAGCACGT
775 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGC
* * ** * * * * * *
19374778 AAAGGGGGACCTGACTAATCCCCAGCTTGCGCATCTCGCCCCTCTAGCTGGCTGAGTGCTC
840 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
19374839 GCACACTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * * *
19374904 CTTTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGTGGCAGCATATGCTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
** * * ** * *
19374969 CTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG-CTAGAGCTTCACCGGAAAACCTGACTGAC
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGAC
* * *
19375033 GGCATTGGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
195 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
19375098 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* **
19375163 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGATGCTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTT
* * * *
19375227 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGCTAAATTTTTTTGTGCAAGCCAAC
389 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
19375292 AAAAATACAGGGATGACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
454 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
** * * *
19375357 TCCCGAACCACAAATAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAAT
519 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * **
19375422 TCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
584 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
19375487 AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGTGCATCCCGTCTC
649 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
19375552 TCTAGCCGGTGTAGTGGCCGCCTGCCCTGCCCGCCCGTTCGTTTCGTCGGTTGGCATAGGCATAC
714 TCTGGCCGGCGTAGT-GCC-CC-GCCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** ** * *
19375617 GGAGTTCATT-CCAGTCTAAGATCAGACC-GAAATGAGGGTTGTGGTAGCAGGATCGGCAGCACA
775 GGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCAGGATCGGCAGCACG
** ** * *
19375680 CAGAGGGGGAACCCGATTGATCCCCGGCTTATGCATCCAGCCCCTCTGGCCGGCTGAGCACCC
839 CAGAGGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * * *
19375743 GTATGCTCATTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCACACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * * * *
19375808 CATTCTCAGTCTAAAATTGGACAGGATCGAGGGTTGCGACAGTACATGCTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * *
19375873 CTGGTGCCGCATTTTTCTTTGTC-GGGCACCATCGTCGGAGTATCGTCAGAGAACCTGACCGACG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
* * * *
19375937 GCATTGGGGTTCTGGCGATCTGGGGGGCCGGGGGGTGTGCGCTCATGATGTGCGATGGTTGCTGG
196 GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * *
19376002 TACTTGGCCCTTATATTGGCCCACTATCCCGCATCAAACCTCAAGAACTCACACCCCCTTAAAGC
261 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
19376067 GCATTTGAGATTTTAGAGGTTTGCTGCCATTAGCCATTAAAGTGTTTGAAATAGGGACACTTTTT
326 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
19376132 TGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
391 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
19376197 AAATACAAGGATCGCGTCTACCAAGTTT-GGGCCTAAAACTCCTTCCGAAAAAATTTTAAAAAAT
456 AAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCTGAAAAAATTTTAAAAAAT
* * * * *
19376261 CCTGAA-C-TACAAAAGGTTTCAAAAATCGTGAAAAATAGAAAATGACTTGTCTTGCCAAGAAAC
520 CCCGAACCGTA-AAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * * *
19376324 TTAACGTGAATGCTTAAGGGACAATTGTACGAATTTAGAAGCCATAAAAATGGCATTGGCACGTA
583 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
*
19376389 GAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
648 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * *
19376454 CTCTGGCCCACGTAGT-----GCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGA
713 CTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * * * * * *
19376514 GTTCATTCCTAGTCTAAGATTGGACCGGATCGAAGGTTAGGGCAACAGGATCAGCAGCACAG-AG
778 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCAC-GCAG
* ** * * * *
19376578 AGGAGGACCCGGTCGATCCCCAGCTT-AGCATCCCGCCCCTCGGGCCGACTGAGCGCCC
842 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
19376636 ACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * *
19376701 CATTCCCAGTCTAGGATCGGACTGGACCTAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* ** * * *
19376766 CTGGTGTCGCATTTTTCTTCACCGGGGCACTATCGTCAGAGCATCGTCGGAGAACCTGACCGGCG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
* * * * *
19376831 GCATTAGGGTTCCAGG-GAACGAGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATTGGTGCC
196 GCATTGGGGTTCC-GGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
19376895 GGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCCTTAAA
259 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
19376960 AAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTT
324 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
19377025 TTTCAAATGGTCACAAAATCTTGTACGCTACGAGTTTTTAGCTGAATTTTTGTGTGCATGCCAAC
389 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
** *
19377090 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAACCTTC-CAAAAACATTTTAAAAA
454 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA-ATTTTAAAAA
** * * * * * *
19377154 ATCTTGAACTGCAAAATGTTTCGAAAATCGTG-AAAATA-AAAACGAATCATCTTGCCATGAAAC
518 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
19377217 TTCACGTGAAGGCTTAAGGGACTATTGCATGAATTTTACAGGCCAT--AAATGGCATTGGCACAC
583 TTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGCACGC
* * **
19377280 AG-AATATGAAGATGT-CCTAAACCCA-CTA-CACCCTATC-AACCACGACCGGCGCATCCCGTC
647 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
19377340 CCTCTGGCCGGCGTAGT-----G-CCGCCTGCCCGCTCGTTTC-TCGGTTGGCTTGGGCATACGG
712 TCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * *
19377398 AGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTT-TGTACAGCAGGATTGGCAGCACG-A
777 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG-GCAGCAGGATCGGCAGCACGCA
* * * **
19377461 GAGGGGGACCCGATCGATCCCCGGCTTG-TCATCTCG-CCCTCTGGCCGGCTGAAAGCCC
841 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
19377519 GCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTTCCCAGTCTAAGCATACGGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGCATACAGAGT
* * * * * * * *
19377584 TCATTTCCAATCTAAGATCAGATCAGACTGAGGGTTGCGGCAGAACATGCTCGGCTCGGGCATGT
65 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * *
19377649 GCTGGTGCCACATTTTTC-TCG-CAGGGGCACCATC-ACTGGAAGCGTCGTCAGAG-ACCTGACC
130 GCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTC-GG-AGCATCGTCGGAGAACCTGACC
* * *
19377710 CACGGCATTGGGCGTTCCGACGAT-GGGGGGACC--GGGG-GTGCGCACATGATGTGCG
192 GACGGCATTGGG-GTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
19377765 NNNNNNNNNN
Statistics
Matches: 9501, Mismatches: 1325, Indels: 352
0.85 0.12 0.03
Matches are distributed among these distances:
875 2 0.00
876 468 0.05
877 137 0.01
878 127 0.01
879 19 0.00
880 16 0.00
881 1 0.00
882 2 0.00
883 364 0.04
884 145 0.02
885 68 0.01
886 17 0.00
887 37 0.00
888 10 0.00
889 152 0.02
890 529 0.06
891 505 0.05
892 69 0.01
893 320 0.03
894 285 0.03
895 660 0.07
896 921 0.10
897 8 0.00
898 53 0.01
899 51 0.01
900 11 0.00
901 397 0.04
902 947 0.10
903 1576 0.17
904 1152 0.12
905 1 0.00
906 1 0.00
908 155 0.02
909 5 0.00
910 1 0.00
913 289 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGG
GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
Found at i:19374000 original size:26 final size:26
Alignment explanation
Indices: 19373964--19374016 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19373954 TTTGACTTGG
*
19373964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19373990 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19374016 G
1 G
19374017 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19374902 original size:26 final size:26
Alignment explanation
Indices: 19374866--19374918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19374856 GTTGACTTAG
*
19374866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19374892 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19374918 G
1 G
19374919 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19376693 original size:26 final size:26
Alignment explanation
Indices: 19376663--19376713 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19376653 GTTGACTTAG
19376663 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19376689 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
19376714 GGATCGGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19377584 original size:27 final size:26
Alignment explanation
Indices: 19377546--19377599 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
19377536 GTTGACTTAG
* *
19377546 GCATATGGAGTTCATTTCCCAGTCTAA
1 GCATACGGAGTTCATTT-CCAATCTAA
19377573 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTTCCAATCTAA
19377599 G
1 G
19377600 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAATCTAA
Found at i:19379471 original size:26 final size:26
Alignment explanation
Indices: 19379435--19379487 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19379425 GTTGACTTAG
* *
19379435 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19379461 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19379487 G
1 G
19379488 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19381248 original size:26 final size:26
Alignment explanation
Indices: 19381219--19381271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19381209 GTTGACTTAG
* *
19381219 GCATACGGAGTTTATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19381245 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19381271 G
1 G
19381272 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19382151 original size:26 final size:26
Alignment explanation
Indices: 19382122--19382172 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19382112 GTTGACTTAG
19382122 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
19382148 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAAAGTTCATTCCCAGTCTA
19382173 GGATTGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:19382404 original size:903 final size:899
Alignment explanation
Indices: 19378765--19385569 Score: 8817
Period size: 892 Copynumber: 7.6 Consensus size: 899
19378755 NNNNNNNNNN
*
19378765 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCAC-CC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
19378829 CCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
19378894 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAC-ATGTTTTTAGCTGAATTTTTGTGTG
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTG
**
19378958 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAACCTTCC-AAAAACA
195 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-A
* * * * * * *
19379022 TTTTAAAAAATCTTGAACTGCAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAATCATCTTG
259 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19379087 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCAT
324 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
19379152 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGC-CGACG
389 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTG-CG
*
19379216 CATCCCGTCTCTCTGGCCGGCGTAGTGCCG---CC-T--GCCCGCTCGTTTCGTCGGTTGGCTTG
453 CATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * **
19379275 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATAGAGGGTTGTAATAGCAGGATCGGC
518 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACAGAGGGTTGCAGCAGCAGGATCGGC
* * *
19379340 AGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGTGCATCTCGCCCCTCTGGCCGGCTGAAAG
583 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGAG
* *
19379405 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGA
648 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
19379470 GTTCATTTCCAATCTAAGATCAGA-TCAGACTGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCA
713 GTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
19379534 TGTGCTGGTGCCGCATTTTTCTTCG-CAGGGGCACCATCACTGGAGCGTCGTCAGAGAACCTGAC
777 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGAC
*
19379598 CGACGGCATTGGGGTTCCGACGAT-GGGGGGGACCGGGGG-GTGCGCACATGATGTGCGA
841 CGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGGGGGTGTGCGCACATGATGTGCGA
*
19379656 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
**
19379721 CCCTTAAAGAGCATTTGAGATTTTACACATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
19379786 GACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTAC-ATGTTCTTAGCTGAATTTTTGTGTG
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTG
19379850 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCC-AAAAAC
195 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAA-
* * * * * * *
19379913 ATTTTAAAAAATCTTGAACTGCAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAATCATCTT
258 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19379978 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCA
323 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19380043 TTGGCACACAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGC-CGAC
388 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTG-C
19380107 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCG---CC-T--GCCCGCTCGTTTCGTCGGTTGGCTT
452 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
19380166 GGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGTAACAGCAGGATCGG
517 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACAGAGGGTTGCAGCAGCAGGATCGG
* * *
19380231 CAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGTGCATCTCGCCCCTCTGGCCGGCTGAAA
582 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGA
* * *
19380296 GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGG
647 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * * * *
19380361 AGTTCATTTCCAATCTAAGATCAGA-TCAGACTGAAGGTTACGGCAGCACATGCTCGGCTCGGGC
712 AGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
19380425 ATGTGCTGGTGCCGCATTTTTCTTCG-CAGGGGCACCATCACTGGAGCGTCGTCAGAGAACCTGA
776 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGA
* *
19380489 CCGACGGCATTAGGGTTCCGACGAT-GGGGGGGACC-GGGGTGTGCGCACATGATGTGCGA
840 CCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGGGGGTGTGCGCACATGATGTGCGA
*
19380548 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
19380613 CCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
19380678 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAC-ATGTTTTTAGCTGAATTTTTGTGTG
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTG
**
19380742 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAACCTTCC-AAAAACA
195 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-A
* * * * * *
19380806 TTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAATCATCTTG
259 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19380871 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCAT
324 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
19380936 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCCGGCGC
389 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
* * * *
19381001 ATCCCGTCTCTCTGGCCGGCGTAGT---GCCTCC-T--GCTCGCTCGTTTCATCGGTTGGCTTGG
454 ATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
19381060 GTATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGTAGCAGCAGGATCGGCA
519 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACAGAGGGTTGCAGCAGCAGGATCGGCA
* * *
19381125 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCGGCTGAAAGC
584 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGAGC
* * *
19381190 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTTATTCCCTGTCTAAGCATACGGAG
649 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * ** *
19381255 TTCATTCCCAGTCTAAGATCGGACTGGACCGTGTGTTACGGCAGCGTATGTTGGGCTCGGGCATG
714 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
19381320 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCATCATCGCCGGAGCATCGTCGGAGAACCTGATCGG
779 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGA
* * *
19381385 CGGCATTGGGGTTCCGGGGATC-GAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGT
844 CGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGTGTGCGCACATGATGTGCGA
*
19381442 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
19381507 TCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGCAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
19381572 GACACTCTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
131 GACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
19381636 CATGCCAATAAAAATACATGGATCAAGTCTACCAAGTTTTGGGCCCAAACTCCTTCCGAAAAAAT
195 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
19381701 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCCTGC
260 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
19381766 CTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAACCATAAAAATGGCATT
325 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * ** **
19381831 GGCACATAGAAATATAAAGGTGTGCTTAAATGCACCTACCACCCTATTGATCCACGGCTTGCGCA
390 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCA
* * * *
19381896 TCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCACCCGTCCGCCCGTTCGTTTCATCGATTGGCTT
455 TCCCGTCTCTCTGGCCGGCGTAGTG-CCG-CC-CCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTT
*
19381961 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATC-GAGGGTTGCAGCAGTAGGATCG
517 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGA-CAGAGGGTTGCAGCAGCAGGATCG
* * *
19382025 GCAGCACGTAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGACTGAG
581 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAG
* * * * **
19382090 TGCCCGCACGCTCGTTACATTGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACG
646 AGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
19382155 GAGTTCATTCCCAGTCTAGGATTGGACTGGATCGAGGGTTGCGGCAGCACATGATGGGCTCAGGC
711 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * *
19382220 TTGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-CACCCGAGCATCGTTAGAAAACCTGAC
776 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGAC
** * *
19382284 CGACGGCATTGGGAATCCGGGGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
841 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGTGTGCGCACATGATGTGCGA
* *
19382345 TGGGTGCTGGTTCTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
19382410 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
19382475 GACACTTGTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTCTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * * * *
19382540 ATACCAAGAAAAGTACAAGGATCATGTCTACCAAGTTTAGAGCCAAAAATCCATT-CGAGAAAAT
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAAT
*
19382604 TTTAAAAAATCTCGGACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
260 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
19382669 CATGAAAATTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATG
325 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
19382734 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCA
390 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCA
* ** * *
19382799 T--CATCTCTCTCGGGGGGCGTA-TGCCG--CCCG-CCGCACG-TCTTTTCGTC-GTTGGCTTAG
455 TCCCGTCTCTCT-GGCCGGCGTAGTGCCGCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
*
19382856 GCATAC--AGTTCAATATTCCC-GTCTAAGAT-AGACCAGACA-A-GGTTGCAG-AGCAAGTGAT
519 GCATACGGAGTTC---ATTCCCAGTCTAAGATCAGATCAGACAGAGGGTTGCAGCAGC-AG-GAT
* * * * *
19382914 CGACAGCA-GCAGA-GGGGA--C--TCGA-CCTCGACTT--GC-TATCGCCCCTC-GTCCGGCT-
579 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
*
19382967 A-AGCGCCG-ACGCTCG--T--T---TTG-----GG---ACGG-GTT-A----C--T-TAGGCAT
644 AGAGC-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * *
19383006 AACTGAGTTCATTCCCAGTCTAAGAT-GGAC--GA-TGAAGGTTG-TGCAGGACATGCTGGG-TC
708 -ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * ** * *
19383065 GAGCATATGCTGGTG-C-TAAGTTTC-TC-ACGGGGCACCATCGTCGGAGCATCGTC-GAAGAAC
772 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAG-AGAAC
* * * *
19383125 CTGACCGAC-G-ATT-GGGTTCC-GTGATC--GTGGGCCAGGTGGTG-CCGCACATGATGTGCGA
836 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGA
* *
19383183 T-GGTGGCTAGGTACTTGGCCCTTATACTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACA
1 TGGGT-GCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** *
19383247 TCCCCTTAAAGAGCATTCAAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
64 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
19383312 GGGACACTTTTTTCAAATGGTGGC-CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
129 GGGACACTTTTTTCAAATGGT--CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19383376 ATGCAAT-TCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAA
192 GTGC-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * * *
19383440 AATTTTTAAAAAAT-TCAGAACCGCAAAAAGTTTTGAAAATCGTGCAAAATAGAAAACGAGTTGT
256 AAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
19383504 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
320 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
19383569 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
385 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTT
* * * * *
19383634 GCGCTTCCTGTCTCTCTAGTCGGCGTAGTGCTCGCTCGCCCGCCCGCCCGTCTGCTCGTTTCGTC
450 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGC-C-CCCGTCCG-CC--C-GCTCGTTTCGTC
* * * * * *
19383699 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGTCTGAGGGTTACTGCAG
508 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACAGAGGGTTGCAGCAG
** * * * *
19383764 CAGGATCGATAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCTTGCCCCTCTGGC
573 CAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGC
* * * * * *
19383829 CGGCTGAGCGCCCACACGTTCGTTTCGTGGTTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTA
638 CGGCTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
19383894 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGATTGAGGCAGCAAATGCTGG
703 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
19383959 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCTGAGCATCGTCGGAG
768 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAG
* * ***
19384024 AACCTTACCGGCGGCATTGGGGTTCTAACGATC-GGGGGGCCGGGGGTGTGCGCACATGATGTGC
833 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGC
*
19384088 AA
898 GA
* * *
19384090 TGGGTGCTGGTTCTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
1 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
19384155 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
66 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19384220 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGTGC
131 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
19384285 ATGCCAAAAAAAATACAAGGATCACGTCTACCAACG-TTGGGGCCAAAAGTCCTTCCGAAAAAAA
196 ATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCG-AAAAAA
* * * * *
19384349 TTTTAAAAAAACTCGAATCACAAAAATTTTCAGAAAT-AGTGAAAAATAGAAAACGAGTCGTCTT
259 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTT
* *
19384413 GCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCA
323 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** *
19384478 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATTCACGGCTTGCG
388 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
* * * * * * ** *
19384543 CATCCCATCTCTCCGGCCGACGTAATGCC-CGCCCGCCCGCCCGCTTATTTCGTCAGTTGGCTTA
453 CATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
19384607 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACAAAGGGTTAC-GATAGTAGGATCGA
518 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACAGAGGGTTGCAG-CAGCAGGATCGG
* * * * ** * *
19384671 CAGCATGTAGAGGCGGACCCGACCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
582 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGA
* * *
19384736 GCCCGCACGCTCGTGTCGTGGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACA
647 GCCCGCACGCTCGTTTCGT-GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * *
19384801 GATTTCATTCCCAGTCTAAGATCGGAATGGACCAAAGGTTGCGGCAGCACATGCTGGACTTGAGC
711 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * * *
19384866 ATATGCTGGTGCTGCATTTTCCTTC-ACTGGGGCACCATCGCCAGAGCATCGCCAGAGACCCTGA
776 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGA
* * *
19384930 CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGAGGGTGTACGGACATGATGTGTGA
840 CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGTGTGCGCACATGATGTGCGA
** *
19384991 TGGGTGCTGCAACTTGGCCCTTATCA-TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
1 TGGGTGCTGGTACTTGGCCCTTAT-ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
19385055 CCCCTTAAAGAGCATTTGAGATTTCATAGGTTTACTGCCAGTAGCCATTAAAGTATCTGAAATTG
65 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
19385120 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATGTTTTTT-T
130 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGT
* * *
19385184 GCATGCCAAGAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTGCGAAAAAA
194 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
19385249 TTTT-AAACATCTCGAACAGTAAAAAGTTTCAAAAATCA-GAAAAAATAGAAAACGAGTCGACCT
259 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATG-AAAAATAGAAAACGAGTCGTCTT
*
19385312 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCA
323 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
19385377 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCG
388 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
* * ** * *
19385442 CATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCACCCGTTTGCCCGCTCGTTTCATCAGT
453 CATCCCGTCTCTCTGGCCGGCGTAGT----G-CCG-CC-CCCGTCCGCCCGCTCGTTTCGTCGGT
* * * *
19385507 TGGCTTAGGCATACGGATTTCATTCCCAGTCTAAGATTAGA-CTGGACCGAGGGTTGC-GCAGCA
511 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACAGAGGGTTGCAGCAGCA
19385570 CATGTTGGGC
Statistics
Matches: 5297, Mismatches: 466, Indels: 287
0.88 0.08 0.05
Matches are distributed among these distances:
837 3 0.00
838 20 0.00
839 141 0.03
840 273 0.05
841 10 0.00
842 15 0.00
843 7 0.00
844 3 0.00
845 12 0.00
846 26 0.00
847 9 0.00
848 4 0.00
849 14 0.00
850 13 0.00
851 8 0.00
852 3 0.00
853 15 0.00
854 35 0.01
855 31 0.01
856 16 0.00
857 14 0.00
858 8 0.00
860 1 0.00
861 1 0.00
862 7 0.00
863 10 0.00
865 2 0.00
866 11 0.00
867 7 0.00
868 3 0.00
869 8 0.00
871 4 0.00
873 1 0.00
874 1 0.00
876 3 0.00
878 9 0.00
879 4 0.00
880 6 0.00
881 12 0.00
882 2 0.00
884 9 0.00
885 7 0.00
886 1 0.00
887 1 0.00
889 8 0.00
890 15 0.00
891 89 0.02
892 1647 0.31
893 41 0.01
894 462 0.09
895 19 0.00
896 10 0.00
897 14 0.00
898 163 0.03
899 363 0.07
900 33 0.01
901 257 0.05
902 105 0.02
903 729 0.14
904 12 0.00
905 95 0.02
906 346 0.07
907 96 0.02
908 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCGCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACAGAGGGTTGCAGCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGAGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGACG
GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGA
Found at i:19383905 original size:26 final size:26
Alignment explanation
Indices: 19383869--19383921 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19383859 TTTGGCTTAG
19383869 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19383895 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19383921 G
1 G
19383922 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19386424 original size:26 final size:26
Alignment explanation
Indices: 19386388--19386440 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19386378 GTTGACCTAG
19386388 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19386414 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19386440 G
1 G
19386441 ATCAGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19389209 original size:26 final size:26
Alignment explanation
Indices: 19389173--19389225 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19389163 GTTGACTTAT
19389173 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19389199 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19389225 G
1 G
19389226 ATCGACCGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19390111 original size:26 final size:26
Alignment explanation
Indices: 19390075--19390127 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19390065 GTTGACTTAC
*
19390075 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19390101 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19390127 G
1 G
19390128 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:19390720 original size:904 final size:898
Alignment explanation
Indices: 19388495--19390798 Score: 3328
Period size: 902 Copynumber: 2.6 Consensus size: 898
19388485 CGGGGTGTGT
* * * * *
19388495 CATGATGTGTGAT-GGTGCTGGTACTTGCCCTTATATAGG--CTTAT-CGTCATCAAACCTTGAG
1 CATGATGTGTGATGGGTGCTGGTACTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAG
** * *
19388556 AACTCA-TACCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGGCTGCCAATACCCATTAAAGTGT
66 AACTCACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCATTAAAGTGT
19388619 TT--AAT-GGGACACTTTTTTCAAATGGTC-CAAAATCTTGTACACTTCGAGTTTTTAGCTGA--
130 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT
* * * * *
19388678 ATTTTTATGCATGCCAACAAAAATACAAGGATGACTTCCACCAAGTTTGGGGCCAAAAATCCATC
195 ATTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTC
* ** * *
19388743 CGAAAAAATTTTTAAAAATCTGGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAG
260 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-TTTTGAAAATCATGAAAAATAGAAAACGAG
* **
19388808 TCATCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGCTTACAAGCCATAAA
324 TCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
19388873 AATGGCATTGGCACACAGAAATATGAAGATTTTCCTAAACCCACCTACCACCCTATCGATCCACG
389 AATGGCATTGGCACGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
19388938 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTC
454 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCATC
* * * *
19389003 GGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGACAGGACCAAATGTTGTGGCAA
519 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCAAAGGTTGTGGCAA
* * * * *
19389068 CAGGATCGGCAGTATGCAAAGGGGGAGCCGATCGATCCCCGACTTACACATCCCGCTCCTCTAGC
584 CAGGATCGGCAGCACGCAAAGGGGGAGCCAACCGATCCCCGACTTACACATCCCGCCCCTCTAGC
*
19389133 CGACTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTA
649 CGACTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTA
* *
19389198 AGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
714 AGCATACGGAGTTCATTCCCAGCCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19389263 ATCGAGCATGTGCTGGTGTCGCATTTTTCTTCGCTGGGGCACCATCGCCGAAGCATCACCGGAGA
779 ATCGAGCATGTGCTGGTGCCACATTTTTCTTCGCTGAGGCACCATCACCGAAGCATCACCGAAAA
** * * * *
19389328 ACCTGACCGGTGGCATTGGGGTTCCGACCACCGGGGGGCTGGGGGAGTGTTCGCA
844 ACCTGACCGACGGCATTGAGGTTCCGACCACCGGGGGGCCGGGGGAGTGTGCCCA
* *
19389383 CATGATGTGCGATGGGTGCTAGG-ACTTGGCCCTTATATTGGCCTCCTATCCCTCACCAAACCTC
1 CATGATGTGTGATGGGTGCT-GGTAC-TGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTC
*
19389447 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
63 GAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
19389512 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACATCGAGTTTTTAGCTT
127 TGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-T
* * *
19389577 AATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAAATC
191 GATTATTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATC
* * *
19389642 CTTTCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
256 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTTGAAAATCATGAAAAATAGAAAAC
*
19389707 GAGTCGTCTTGCCGTGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
321 GAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
19389772 AAAAATGGCATTGGCACGCAGAAATATGAAGATTTGCCTAAACCCACATACCACCCTATCGATCC
386 AAAAATGGCATTGGCACGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCC
*
19389837 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGTCCC-CCTGCCCGCGT-GTT
451 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCG-CCCGCCCGCCCGC-TCGTT
* *
19389900 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACTAAGGGTTGT
514 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCAAAGGTTGT
* * * *
19389965 GGCAACAGGATCGGCAGCACGCAGAGGGGGAGCCAACCGATCCCCGGCTTGCGCATCCCGCCCCT
579 GGCAACAGGATCGGCAGCACGCAAAGGGGGAGCCAACCGATCCCCGACTTACACATCCCGCCCCT
* * * *
19390030 CTGGCTGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCA
644 CTAGCCGACTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCA
*
19390095 GTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACAT
709 GTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACAT
* * * * * **
19390160 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-TCGAGGCTCCATCATCGGAGCATTG
773 GCTGGGATCGAGCATGTGCTGGTGCCACATTTTTCTTCGCT-GAGGCACCATCACCGAAGCATCA
* *** * *
19390224 CCGAAAAACCTGACCGACGGCGTTGAGGTTCCGGTGATCGGAGGGGCCGGGGGGGTGTGCCCA
837 CCGAAAAACCTGACCGACGGCATTGAGGTTCCGACCACCGG-GGGGCCGGGGGAGTGTGCCCA
19390287 CATGATGTGTGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
1 CATGATGTGTGATGGGTGCTGGTAC-TGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCG
*
19390352 AGAACTCACCCCCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
64 AGAACTCA--CCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
19390417 TGTTTGAAATGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
127 TGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
19390482 ATTGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGTGG-TAAAAACTC
192 ATTATTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAA-TC
* * **
19390546 CTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTCAAAAATCATGAAAAATAGAAAAC
256 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTTGAAAATCATGAAAAATAGAAAAC
*
19390611 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
321 GAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** * * * *
19390676 AAAAATTTCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCC
386 AAAAATGGCATTGGCACGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCC
* * ** * ** *
19390741 ACGGCTTGCACATCCCGTCTCTGTGGCTAGCGTAGTGCCCGCCTACCCGCACGCCCGC
451 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGC
19390799 ACGCAGAGGG
Statistics
Matches: 1261, Mismatches: 127, Indels: 40
0.88 0.09 0.03
Matches are distributed among these distances:
888 12 0.01
889 8 0.01
890 15 0.01
893 4 0.00
894 20 0.02
896 34 0.03
897 18 0.01
898 3 0.00
899 22 0.02
900 27 0.02
901 2 0.00
902 414 0.33
903 208 0.16
904 360 0.29
905 113 0.09
906 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (898 bp):
CATGATGTGTGATGGGTGCTGGTACTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAG
AACTCACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTA
TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCC
GAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTC
GTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCATCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCAAAGGTTGTGGCAACA
GGATCGGCAGCACGCAAAGGGGGAGCCAACCGATCCCCGACTTACACATCCCGCCCCTCTAGCCG
ACTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGCCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGAT
CGAGCATGTGCTGGTGCCACATTTTTCTTCGCTGAGGCACCATCACCGAAGCATCACCGAAAAAC
CTGACCGACGGCATTGAGGTTCCGACCACCGGGGGGCCGGGGGAGTGTGCCCA
Found at i:19392281 original size:4 final size:4
Alignment explanation
Indices: 19392272--19392302 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
19392262 ACGTAGTGCT
*
19392272 CGCC CGCC CGCC CACC CGCC CGCC CGCC CGC
1 CGCC CGCC CGCC CGCC CGCC CGCC CGCC CGC
19392303 TCGTTTCTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.03, C:0.74, G:0.23, T:0.00
Consensus pattern (4 bp):
CGCC
Found at i:19392512 original size:26 final size:26
Alignment explanation
Indices: 19392483--19392535 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19392473 GTTAACCTAG
19392483 GCATACAGG-GTTCATTCCCAGTCTAA
1 GCATAC-GGAGTTCATTCCCAGTCTAA
*
19392509 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19392535 G
1 G
19392536 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19393418 original size:26 final size:26
Alignment explanation
Indices: 19393382--19393434 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19393372 GTTAACTTAG
19393382 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19393408 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19393434 G
1 G
19393435 ATCAACCTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19393468 original size:899 final size:896
Alignment explanation
Indices: 19391605--19393620 Score: 2473
Period size: 899 Copynumber: 2.2 Consensus size: 896
19391595 GTTGGCTTAG
* * * * *
19391605 GCATACGGAGTTAATTCCCAATCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTT-ATTCCCAGTCTAAGATCA-ACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
19391670 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCACC-GAGCACCATCGCCGAAGCATCACCGGAGA
64 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGACGAAGCATCACCGGAGA
* * * *
19391734 ATCT-ACCCGGTGGCATTGAGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGGTGT
129 ACCTGA-CCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
19391797 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** *
19391862 CATGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19391927 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTAAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
19391992 GTGCATGCCAACAAAAATA-GAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCC----
387 GTGCATGCCAA-AAAAATACG-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * * * *
19392052 -----GAAAAAATCCCGAACAGCGAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCT
450 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
19392112 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * *
19392177 ATTGCCACGTAGAAATATGAAGATTTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGC
580 ATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19392242 ACATCTCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCACCCGCCCGCCCGCCCGCTCGT
645 GCATCCCGTCTCTCTGG-C--C---G-G--CG-CAG--TG--C-CCCGCCCGCCCGCCCGCTCGT
* * * * * *
19392307 TTCTTCAGTTGGCTTAGGGATACGGAGTTCATTCCCAGTCAAAAATTGGATCAGACCGAGGGTTG
695 TTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTG
* * * * * * * * *
19392372 CAGCAGCAGGATTGACAACACGCAGAGGGGGACTCGACCGATCCCCAGCTTGTGCATCCTGCCCC
760 CGGTAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * * * ** * *
19392437 TCTTGTCGACTGAGTGCCTGCATGCTCATTTTATGGGTTAACCTAGGCATACAGGGTTCATTCCC
825 TCTAGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCC
19392502 AGTCTAA
890 AGTCTAA
* * *
19392509 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGC-AGCAGCACATGCTAG
1 GCATACGGAGTT-ATTCCCAGTCTAAGATCA-ACCAGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * * *
19392573 GCTCGGGAATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGACAAAGCATCACCAGAG
63 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGACGAAGCATCACCGGAG
* * *
19392638 AACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGCCGGGGTGGGTGTGCGCTCATGATGT
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG-GGGTGTGCGCACATGATGT
* * * *
19392703 GCGATGGGTGCTGGTACTTAGCCCTTATATTGGTCCCCTATCCCTCATTAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
19392768 CACCCCCTTAAAGAGTATTTGGGATTTTACAGGCTTACTGCCAGTAGCCATTAAAGTGTTTGAAA
257 CACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19392833 TGGGGACACTTTTTTCAAATGATCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
19392898 GTGCATGCCAAAAAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
387 GTGCATGCCAAAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * ** * *
19392963 ATTTTAAAAAATCTCAAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
451 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* * * **
19393028 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGGATTTACAAGCCATATAAATATCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19393093 TTGGCTCACAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
581 TTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * * *
19393158 CATCCCGTCTATCTGGCCGGCATAGTG-TCCGCCCGCTCGCCCGCTCGTTTCATCGGTTGGCTTA
646 CATCCCGTCTCTCTGGCCGGCGCAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTA
* * * *
19393222 GGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGATTGTGGTAGCAGGATCGAT
711 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGTAGCAGGATCGAT
* * * *
19393287 AGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCGTCCCGCCCCTCTAGCCGGCTGAGCG
776 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCG
* *
19393352 CCCGCACGCTTGTTTTGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 CCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
19393408 GCATACGGAGTTCATTCCCAGTCTAAGATCAACCTAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTT-ATTCCCAGTCTAAGATCAACC-AGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
19393473 CTCGAGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCAT---C---G--T---CGGAGA
64 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGACGAAGCATCACCGGAGA
** ** * * *
19393527 ACCTGATTGATGGCATTGGGGTTCCGGCGATCGGGGGGCCAGGGGGGTGTGCGCACATTATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
19393592 GATGGGTGCTGGTAGTTGGCCCTTATATT
194 GATGGGTGCTGGTACTTGGCCCTTATATT
19393621 TGCACCCGAG
Statistics
Matches: 965, Mismatches: 129, Indels: 53
0.84 0.11 0.05
Matches are distributed among these distances:
887 46 0.05
888 41 0.04
891 1 0.00
893 1 0.00
896 1 0.00
898 3 0.00
899 281 0.29
900 1 0.00
903 1 0.00
904 96 0.10
905 98 0.10
906 209 0.22
908 1 0.00
909 1 0.00
912 1 0.00
914 1 0.00
915 182 0.19
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTATTCCCAGTCTAAGATCAACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGACGAAGCATCACCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTT
AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGCAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGTAGCAGGATCGATAGCAC
GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:19396162 original size:26 final size:26
Alignment explanation
Indices: 19396126--19396178 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19396116 GTTGACTTAG
19396126 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
19396152 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19396178 G
1 G
19396179 ATCGAGCCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19397217 original size:13 final size:12
Alignment explanation
Indices: 19397182--19397213 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
19397172 GTGCTGGTAC
*
19397182 TTGGCCCTTATA
1 TTGGCCCCTATA
19397194 TTGGCCCCTATA
1 TTGGCCCCTATA
19397206 TTGGCCCC
1 TTGGCCCC
19397214 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:19398934 original size:468 final size:467
Alignment explanation
Indices: 19398040--19398960 Score: 1463
Period size: 468 Copynumber: 2.0 Consensus size: 467
19398030 TAGCATATTT
* * * **
19398040 TTTTTATGCATGCCAAAAAAATACAAGGATCATGTGTACAAAGTTTGGGGCCAAAACTCCTTCCA
1 TTTTTATGCATGCCAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGACAAAACTAATTCCA
19398105 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTC
66 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTC
*
19398170 ATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAA
131 ATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19398235 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGC
196 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGC
* ** * * *
19398300 TTGCGTATCCCGTCTCTCTGGCTGGCGTAGTGATCGCCCGCTCGCTCGTTTCATCGGTTGGCTCA
261 TTGCGCATCCCGTCTCTCTGGCCAGCATAGTGACCGCCCGCCCGCTCGTTTCATCGGTTGGCTCA
* * * *
19398365 GGCATATGGAGTTCATTCTCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCGGT
326 GGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCGGC
*
19398430 AGCATGCAGAAGGGGACCCGGTCGATCTCCGTCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCT
391 AGCATGCAGAAGGGGACCCGATCGATCTCCGTCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCT
19398495 TTTAGCTGAATG
456 TTTAGCTGAATG
* * *
19398507 TTTTTATGCATGCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGAGAAAACTAATTCC
1 TTTTTATGCATGCCAA-AAAAATACAAGGATCACGTCTACAAAGTTTGGGGACAAAACTAATTCC
* * * *
19398572 AAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAGTAGAAAACGAG
65 AAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAG
* *
19398636 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAA
129 TCATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
19398701 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCG
194 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACG
*
19398766 GCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCTCGTTT-ACTCGGTTGGC
259 GCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGACCGCCCGCCCGCTCGTTTCA-TCGGTTGGC
* *
19398830 TCAGGCATATGGAGTTCATTCCCAGTCTAAGATTGAACCGGACTGAGGGTTGTGGCAGCAGGATC
323 TCAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATC
*
19398895 GGCAGCATGCAG-AGGGAGACCCGATCGATC-CCTGTCTTGCGCATCCCGCCCCTCTGGCCGGCT
388 GGCAGCATGCAGAAGGG-GACCCGATCGATCTCC-GTCTTGCGCATCCCGCCCCTCTGGCCGACT
19398958 GAG
451 GAG
19398961 AGCCCGCATG
Statistics
Matches: 415, Mismatches: 34, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
467 25 0.06
468 390 0.94
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (467 bp):
TTTTTATGCATGCCAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGACAAAACTAATTCCA
AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTC
ATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCAGCATAGTGACCGCCCGCCCGCTCGTTTCATCGGTTGGCTCA
GGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCGGC
AGCATGCAGAAGGGGACCCGATCGATCTCCGTCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCT
TTTAGCTGAATG
Found at i:19401685 original size:26 final size:26
Alignment explanation
Indices: 19401649--19401701 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19401639 GTTCACTTAG
19401649 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
* * *
19401675 GCATACGGAGTTTATTCCCAGTGTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
19401701 G
1 G
19401702 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:19401685 original size:892 final size:894
Alignment explanation
Indices: 19398494--19405757 Score: 8785
Period size: 892 Copynumber: 8.2 Consensus size: 894
19398484 CCGACTGAGC
* * * **
19398494 TTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGA
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTC
* ** * * * * ** *
19398559 GAAAACTAATTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAA
66 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* *
19398624 GTAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
19398689 ACAAGTCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
196 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * **
19398754 TATCGATCCGCGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCTCGTTT
261 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTATTT
* * * * *
19398819 -ACTCGGTTGGCTCAGGCATATGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGACTGAGGGTTG
326 CA-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCGAGGG-TG
* * * * * * * * *
19398882 TGGCAGCAGGATCGGCAGCATGCAGAGGGAGACCCGATCGATCCCTGTCTTGCGCATCCCGCCCC
388 AGACAGCAGGATCGGCAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTACGCATCCCGCCCC
* * * * * *
19398947 TCTGGCCGGCTGAGAGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCA
453 TCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * *
19399012 AGTCTAAGAATACGGAGTTCATTCCCAGTTTAAGATCGGA-CTGGACCGAGGGTTACGGCAGCAC
518 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGACAGCAC
* * ** * **
19399076 ATGCTGGGCTCGGGCAAGTGCTGTTTTCACATTTTTCTTC-TCCGGGGCACCATCACCGGAGCAT
582 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGTCGGAGCAT
** * * * * *
19399140 CGTCGGAGAACTTGACCGGCGGCATTGGGGTTCAGACGATC-GGGGGGCCAGGGGGTGTGC-CTG
646 CACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC-A
* *
19399203 CATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
710 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
19399268 AGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
775 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * ** *
19399333 GTCTGAAATGGGGACACTATTTTCGAATGCTCACAAAAAGTTGTACACTTCCAGT
840 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
19399388 TTTT-GCCT-AATTTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
1 TTTTAG-CTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
19399451 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAA-CTATGA
64 TCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC-ATGA
* * *
19399515 AAAATAAAAAACAAGTC-T-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAA
128 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
19399578 TTTACAAGCCA-AATAAATGGCTTTGGC-T-CATAGAAATATGAAGATATGCCTAAACCCACCTA
193 TTTACAAGCCATAA-AAATGGCATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTA
*
19399640 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCCGTC
255 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-TGCCCG-CC--C
** * * *
19399705 TGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA-ATCAGACCGG
314 -GCCCGCTTATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
* * * * * * *
19399769 ACCGAGGGTTACGGCAGCAGGATCGGCAGCCCACAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
378 ACCGAGGGTGA-GACAGCAGGATCGGCAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTACG
* *
19399834 CATCCCGCCCCTCTGTCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
442 CATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
19399899 AGTTCATTCCCAGTCTAAG-AT-C-GA----ATT----G-----GA-C---T------GAGGGTT
507 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT
* * ** * *
19399938 GCGAAAGCACATGCTGGTCTCGACCATGTGCTGGTGCCGCATTTTTCTTTG-CCGGG-A-CA---
572 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * *
19399997 -C----CATCACAGGAGAACCTGACCGACGGCATTTGGGTTTCGACGATCGGGGGGGCCGGGGGG
637 TCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG
* *
19400057 GTGTGCGCACATTATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
701 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
19400122 CGAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
766 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
19400187 CATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
831 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
19400251 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGG-
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGT
* * ***
19400315 CCAAAAAT-CTTTCTGAAAATATTTTAAAAAATCCCGATTTGCAAAAAGTTTCAAAAATCATGAA
65 CCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
* * * *
19400379 AAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGTCCATTGTATGAAT
129 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
19400444 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTTCCTAAACCCACCTACCAC
194 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
19400509 CCTATCGATCCACGACTTGCGCATCACATCTCTCTGGCCGGTGTAGTGCCCGCTCGTCCACCCGC
259 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CG----CCCGC
** * *
19400574 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACC
316 CCGCTTATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACC
* * * * * * * *
19400639 AAGGGTTGCGATAACAGGATCGGCAGCATGCAGAGGGGGACCTGATCGAT-CCCGGCTTTCGTAT
381 GAGGG-TGAGACAGCAGGATCGGCAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTACGCAT
* * * *
19400703 CCCGTCCCTTTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
445 CCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
19400768 TCATTCCCAGTCTAAGCACACGGAGTTCATTCCCAGTCTAATATCGGATCAGACCGAGGGTTGCG
510 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCG
* * * * * *
19400833 ACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCCTCGGGCCACCATCATCA
575 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * *
19400898 GAGCATCACCGGGGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT
640 GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT
* *
19400963 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAA
705 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
19401028 CCTCGAGAACTCACA-CCCCTCAAAGAAG-ATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCAT
770 CCTCGAGAACTCACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
19401091 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGT
834 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* **
19401152 TTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGTC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTC
* * * ** *
19401217 CAAAA-TCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTGGAAAATCGTGAAAA
66 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * * *
19401281 ATAGAAAATGAGTCATCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGATCATTGTATGAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
19401346 ACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGGAGATGTGCCTAAACCCACCTAACGCCC
196 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
19401410 TATCAATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTTATTT
261 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTATTT
* * * *
19401475 CATCGGTTGGATTAGGCATACGGAGTTCATTCCCTA-TCTAAAATCAGACTGAACCAAGGGCTGA
326 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGAACCGAGGG-TGA
* * * * * * * *
19401539 GGCAACAGGATCGGCAACACGTAGAGGGGGACCTGATCGATCCCCGGCTTACGCATCTCGGCCTT
389 GACAGCAGGATCGGCAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTACGCATCCCGCCCCT
* * * *
19401604 CTGGCTGGCTAAGCGCCTGCACGCTCGTTTCGTGGGTTCACTTAGGCATACCGAGTTCATTCCCA
454 CTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
19401669 GTCTAAGCATACGGAGTTTATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGACAGAACAT
519 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACAT
* **
19401734 GCTGGGCTCGGGCATGTGCTGGTACCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGT
584 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
*
19401799 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCACACATG
649 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
19401863 ATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAA
714 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
19401928 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCTGTAACAATTAAAGTGTCT
779 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
19401993 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
844 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
19402044 TTTTAGCTAAAGTTTTTTGTGCATGCCAACAAAAATACAAGGACCACATCTACCAAGTCTGGGAT
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-T
* * * *
19402109 -GAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCCGAACCGCACAAAGTTTTAAAAATCGTGAA
65 CCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
*
19402172 AAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
129 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * * *
19402237 TTACGAGCCATAAAAATGGAATTGGCATGTAGAAATAAGAAGATGTACCTAAACCCACCTACCAC
194 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * * *
19402302 GCTATCGATCCACGACTTGCACATCCCATTTTTCTGGCCGGAGTAGT--------GCACG-----
259 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTAT
19402354 --C--C--TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGGTT
324 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGG-T
* * * * * * *
19402412 GCGATAGCAGGATCGGTAGCACACAGAGGGGGACC-CAGCCGATCCCTGGGTTACGCATCCCGCC
387 GAGACAGCAGGATCGGCAGCACGCAGAGGGGGACCTGA-CCGATCCCCGGCTTACGCATCCCGCC
* * **
19402476 CCTCTGGCTGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTC
451 CCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
19402541 CCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAAGATCGGATCGGACCGAGTGTTGCGGCAGCA
516 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCA
* *** *
19402606 CATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTTACCGGGGCACCATCGCCGGAGCAT
581 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* * * * * *
19402671 CACCGGAGAACTTGGCAGACGGCATTGGGGTTTCGACCATCGGGGGGGCTGGGCGGGCTGTGCGC
646 CACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGG-TGTGCGC
*
19402736 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTC
709 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
19402801 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCATTAGCAATTAAAG
774 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * *
19402866 TGTCTGGAATGGGGACACTTTTTTCAAATGGTC-CTGAAATCTTGTACACTTTGAAT
839 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGT
* * * * * * *
19402922 TTGTAGCTGAATTCTTTTGTGCAAGCCAACCAAAATACAAGGATCACATCTACCACGTTTGGGAC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTC
* * * **
19402987 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCACAAAGTTTTGAAAATCATGAAAA
66 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * *
19403052 ATAAAAAACGAGTCATCTT-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
19403116 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGC
196 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
19403181 TATCGATCCACGGCTTGCGCATCCCGTCTTTCTAGCCGGAGTAGTGCACGCCCGCCCGTCCGCCC
261 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C--CCGCCC
* * * *
19403246 GTCTGCTCATTTCATCGGTTGGCTTAGGCTTACGGAGTTCATTTCCAGTCCAAGATCAGACCGGA
318 G-CT--T-ATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA
* * * *
19403311 CCGAGGGT-----TGC-GG-T----AGTACGCAGAGGGGGACCCTG-CCGATCCCCGGGTTATGC
379 CCGAGGGTGAGACAGCAGGATCGGCAGCACGCAGAGGGGGA-CCTGACCGATCCCCGGCTTACGC
** * * * * *
19403364 ATCCTACCCCTCTGGCTAGCTGAGTGCCCACACGTTCGTTTCGTGGGTTGACTTAGGCATACAGA
443 ATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * ** * *
19403429 GTTCATTCCTAGTCTAAGCGTATGAAGTTCATTCCCAGTCTAAGATTTGACCAGACCGAGGGTTG
508 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG
** * * * * * * *
19403494 CGGTAGCACATACTAGGCTCGGGCATGTGCTAGTGCCACATTTTTCTTTGCCGGGGCACCATCGC
573 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
** * *** * ** * *
19403559 CGGAGCATCGTCGGAGAACTTGGTTGGCGGCATTGGGGTTTTGACCATCGGGGGGGCCGGGCAAG
638 CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG--GG
* * *
19403624 CTGTGCGCACATGATGTGCGATGGGTGCTAGAACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
701 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
19403689 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGC
766 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
19403754 CATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGCCCCAAAATCTTGTACGCTTCGAGT
831 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
19403818 TTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGTT
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTC
* * * *
19403883 CAAAACTCCATCCAAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCATGAAAA
66 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
*
19403948 ATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *** * *
19404013 ACAAGCCATCAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAATCCGCCTACCACCC
196 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
19404078 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCGCGCCCGCCCGCCC
261 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCCC
** * *
19404143 GCTCGTTTCATCGGTT-GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CTAGACCG
318 GCTTATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCG
* * * * *
19404206 TAGGGTTGCGACAGCAAGATCGGCAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCAT
382 -AGGG-TGAGACAGCAGGATCGGCAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTACGCAT
* ** *
19404271 CCCAG-CCCTCTGGCCGGCTGAGCGCCCGCACATTGGTTTCGTGGGTTGACTTAGGCATACGGAG
445 CCC-GCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
19404335 TTCATTCCCAG--T---C-TA---AG---------A-TC--AGATCGGAT-----CGAGGGTTGC
509 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC
* * *
19404374 GGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-TC
574 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-
* * * * *
19404438 CGGAGCATCGCCAGAGAACCTGATCGACGGCATTGGGGCTCCGACGATCGGGGGGG-CTGGGGGT
638 CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
*
19404502 GTGCGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
703 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
19404567 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCA
768 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
19404632 TTAGAGTGTCTAAAATGTGGACAC--CTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
833 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
19404692 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTC
* * * *
19404757 CAAAACTCC-TTCTGAAAAAATTTTAAAAAATTCTGAACTGCAAAAAGTCTCAAAAAT-AGTGAA
66 CAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA-TGAA
* *
19404820 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAAT
129 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
19404885 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCAC
194 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
*
19404950 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGGCGTAGTGCCCGCCCGCCCGCCTGC
259 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CT--
* *
19405015 TAGCTCTTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-AGAC
321 TA-----TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-AC
* * * * * * * * * *
19405079 CGAGGGTTATAGTAGCAGGATCAGCAGCACGTAGAGGGGGA-CTCGGCCTATCCTCGGCTTGCGT
380 CGAGGGTGAGA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCT-GACCGATCCCCGGCTTACGC
*** * **
19405143 ATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACAAA
443 ATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
19405208 GTTCATTGCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTG
508 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG
* * * * *
19405273 CGCCAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGCAATTTTCTTCGTCGGGGCACCATCGC
573 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
*
19405338 CGTG-GCATCACGGGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATCGGGGGGGGCCGGGG
638 CG-GAGCATCACCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGG
* * * * * *
19405401 GGTGTGTGCACATGATGTGTGATGGGTGATGGTACTTGGCCCTTATATCGGCCTCGTATCCCTCA
700 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* ** *
19405466 TCAAACCTCAAGAACTCACACGGCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
765 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
19405531 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGT
830 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* ** * *
19405596 TTTTGGCCAAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGTC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTC
* * *
19405661 CAAAACTCCTTTCG-AAAAATTTTAAAAAAT-CTGAAACTGCAAAAAGTTTCAAAAATCGTGAAA
66 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG-AACCGCAAAAAGTTTCAAAAATCATGAAA
* * *
19405724 AATAGAAAACGAGTCGTGTTGCTATGTAACTTCA
130 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
19405758 GGTCCAAAAC
Statistics
Matches: 5547, Mismatches: 617, Indels: 403
0.84 0.09 0.06
Matches are distributed among these distances:
861 36 0.01
862 14 0.00
863 301 0.05
864 9 0.00
865 140 0.03
866 157 0.03
867 50 0.01
868 2 0.00
869 6 0.00
870 1 0.00
871 4 0.00
872 45 0.01
873 11 0.00
874 433 0.08
875 347 0.06
876 159 0.03
877 150 0.03
878 312 0.06
879 115 0.02
880 2 0.00
881 1 0.00
882 3 0.00
883 3 0.00
884 6 0.00
886 7 0.00
887 2 0.00
891 204 0.04
892 618 0.11
893 147 0.03
894 206 0.04
895 20 0.00
896 572 0.10
897 156 0.03
898 138 0.02
899 144 0.03
900 224 0.04
901 188 0.03
902 239 0.04
903 120 0.02
904 106 0.02
905 98 0.02
906 1 0.00
907 1 0.00
908 49 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTC
CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTATTT
CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTGAGA
CAGCAGGATCGGCAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTACGCATCCCGCCCCTCT
GGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
Found at i:19403650 original size:896 final size:892
Alignment explanation
Indices: 19402356--19407439 Score: 4840
Period size: 896 Copynumber: 5.8 Consensus size: 892
19402346 AGTGCACGCC
19402356 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-T----TAGC-
* * * * * * *
19402421 GGATCGGTAGCACACAGAGGGGGACCCAGCCGATCCCTGGGTTACGCATCCCGCCCCTCTGGCTG
60 --A--GGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
* * *
19402486 GCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCCAGTCTAAG
121 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * * *
19402551 CATACGGAGTGCATTCCCAGTCTAAGATCGGATCGGACCGAGTGTTGCGGCAGCACATGCTGGGC
186 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *** *
19402616 TCAGGCATGTGCTGGTGCCGCATTTTTCTTTACCGGGGCACCATCGCCGGAGCATCACCGGAGAA
251 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * * * *
19402681 CTTGGCAGACGGCATTGGGGTTTCGACCATCGGGGGGGCTGGGCGGGCTGTGCGCACATGATGTG
316 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGG-TGTGCGCACATGATGTG
*
19402746 CGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
379 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19402811 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCATTAGCAATTAAAGTGTCTGGAAT
444 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
19402876 GGGGACACTTTTTTCAAATGGTC-CTGAAATCTTGTACACTTTGAATTTGTAGCTGAATTCTTTT
509 GGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19402940 GTGCAAGCCAACCAAAATACAAGGATCACATCTACCACGTTTGGGACCAAAACTCCTTCCGAAAA
573 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * *
19403005 AATTTTAAAAAATCCTGAACCGCACAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCATCT
638 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19403070 TCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCA
703 TCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19403135 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCG
768 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
19403200 CATCCCGTCTTTCTAGCCGGAGTAGTGCACGCCCGCCCGTCCGCCCGTCTGCTCATTTCATCGG
833 CATCCCGTCTCTCTAGCCGGAGTAGTGCACGCCCGCCCG-CCG-CC-TC-GCTCATTTCATCGG
* * * *
19403264 TTGGCTTAGGCTTACGGAGTTCATTTCCAGTCCAAGATCAGACCGGACCGAGGGTT-GC-GGTAG
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAGCAGGTAG
* * * ** * ** *
19403327 TACGCAGAGGGGGACCCTGCCGATCCCCGGGTTATGCATCCTACCCCTCTGGCTAGCTGAGTGCC
66 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCC
* * * * *
19403392 CACACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCGTATGAAGT
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGT
** * * * *
19403457 TCATTCCCAGTCTAAGATTTGACCAGACCGAGGGTTGCGGTAGCACATACTAGGCTCGGGCATGT
196 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * * *** *
19403522 GCTAGTGCCACATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACTTGGTTGGC
261 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
** * * *
19403587 GGCATTGGGGTTTTGACCATCGGGGGGGCCGGGCAAGCTGTGCGCACATGATGTGCGATGGGTGC
326 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGG--GGGTGTGCGCACATGATGTGCGATGGGTGC
* *
19403652 TAGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
389 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
19403717 AGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
454 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
19403782 TTTTCAAATGGCCCCAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAA
519 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** * *
19403847 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGTTCAAAACTCCATCCAAAAAAATTTTAAAAA
584 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
19403912 ATCCCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
649 ATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT-CCATGAAAC
* * **
19403977 TTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATCAAAATGGCATTGGCACATA
713 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
19404042 GAAATATGAAGATGTGCCTAAATCCGCCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
778 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
19404107 CTCTGGCC-GACGTAGTGCCCGCGCGCCCGCCCGCC-CGCTCGTTTCATCGG
843 CTCTAGCCGGA-GTAGTGCACGCCCGCCCG-CCGCCTCGCTCATTTCATCGG
* *
19404157 TT-GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGTAGGGTTGCGACAGC
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG-AGGGTT-----AGC
* * * *
19404221 AAGATCGGCAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCAGCCCTCTGGCC
60 ---A--GGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
** * *
19404286 GGCTGAGCGCCCGCACATTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
120 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
19404347 -C-TA---AG---------A-TC--AGAT-----CGGATCGAGGGTTGCGGCAGCACATGCTGGG
185 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19404390 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCCGGAGCATCGCCAGAGA
250 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
19404455 ACCTGATCGACGGCATTGGGGCTCCGACGATCGGGGGGG-CTGGGGGTGTGCGCACATGATTTGC
315 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
19404519 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
380 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19404584 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAGAGTGTCTAAAATG
445 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19404649 TGGACAC--CTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
510 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19404712 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
575 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
19404777 TTTTAAAAAATTCTGAACTGCAAAAAGTCTCAAAAAT-AGTGAAAAATAGAAAATGAGTCGTCTT
640 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTT
*
19404841 GCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
704 -CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19404906 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTTGCG
768 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
19404971 CATCCCGTCTCTCTGGGCGGCGTAGTGCCCGCCCGCCCGCCTG-CTAGCTCTTTTCGTCGG
833 CATCCCGTCTCTCTAGCCGGAGTAGTGCACGCCCGCCCGCC-GCCTCGCTCATTTCATCGG
*
19405031 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATAGTAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG---T--TAGCA
* * * * * * *
19405096 GGATCAGCAGCACGTAGAGGGGGACTCGGCCTATCCTCGGCTTGCGTATCCCGCCCCTCTGGCCA
61 GG-T----AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
* * * * *
19405161 ACTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACAAAGTTCATTGCTAGTCTAAG
121 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * * * *
19405226 CATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGCCAGCACATGCTAGGC
186 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
19405291 TCGGGCATGTGCTGGTGTCGCAATTTTCTTCGTCGGGGCACCATCGCCGTG-GCATCACGGGAGA
251 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCG-GAGCATCGCCGGAGA
*
19405355 ACCTGACC-AGCGGCATTGGGGTTCCGACGATCGGGGGGGGCCGGGGGGTGTGTGCACATGATGT
315 ACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * * * *
19405419 GTGATGGGTGATGGTACTTGGCCCTTATATCGGCCTCGTATCCCTCATCAAACCTCAAGAACTCA
378 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** *
19405484 CACGGCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
443 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * **
19405549 TGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCCAAATTTTTTT
508 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19405614 TTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGTCCAAAACTCCTTTCG-AAA
573 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
19405678 AATTTTAAAAAAT-CTGAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTG
638 AATTTTAAAAAATCCTG-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * * * * ** ** * *
19405742 TTGCTATGTAACTTCA---G--GTC-CAA--AACTCCTTCCA--AA---A-AA-ATATGAAGATG
702 TT-CCATGAAACTTCACGTGAAGGCTTAAGGGAC-CATTGTATGAATTTACAAGCCATAAAAATG
* *** ** * * * ** ***
19405792 TGC-TTAAGCCCAC-CTACCGCCCTATTGATCCACG-GCTTACGCATCCCGTCT-CTCTGGCT-T
765 -GCATT--G-GCACGC-A--GAAATA-TGA-AGATGTGCCTA---AACCCACCTAC-CACCCTAT
* ** * ** * ** * * ** *
19405852 GTGTAGTGCC-C-GCCCGCTCATTTCGTCGGT-TGGCTTAGGCATATGGAGTTCATTCCCAG-AC
817 -CG-A-T-CCACGGCTTGCGCATCCCGTC--TCT--C-TAGCCGGA-GTAGTGCACGCCC-GCCC
*** * * **** **
19405913 TATG-ATCAGATCGGACCAAGGG
871 GCCGCCTC-GCTCATTTCATCGG
* ** ** ** * * * * *** *
19405935 TT-GC---GGCA-GCAGGA--TCGGTAGCACGTAGAAGGGGACCCG-GCTGATCCCCTGCTT-GC
1 TTGGCTTAGGCATAC-GGAGTTCATTCCCA-GTCTAA---GATCAGACCAGA-CCGAGGGTTAGC
* * * ****** * * * * ** * ** *
19405991 --GCATCCCGC-CCCTTTGA-CCGGCTGAGCACCCGAAC--GCTCATTTCA----T-GGGTTGAC
60 AGGTAGCACGCAGAGGGGGACCCGGCCGATC-CCCG-GCTTGCGCATCCCACCCCTCTGGCCGGC
* *** * * * *** * ** * *
19406045 TTAG-GCATACAGAGTTC-ATTC-CCAG-T--C-TAAGCATATGGAGTTAATTCCTAGTCT----
123 TGAGCGCCCGCA-CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * *
19406099 --A---AG---A-T--C-G-----GA-C-G---GGAGCGAGGGTTGTGGTAGCACATGATGGGCT
187 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * ** *
19406142 CGGGCATGTACTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAAC
252 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
* ** * * *
19406207 CTGACCGACGGCATTGGGGTTCCGGCGATCGACGCGACCGGGGGGTGTGCGCACATGATGTGTGA
317 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
19406272 TGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCA-CAAACCTTGAGAACTCTCACC
382 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
19406336 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
447 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19406401 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-CTTGAATTTTTTTATG
512 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGTG
*
19406465 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAT
576 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** * * * *
19406529 TAAAAAAAAACCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGC
641 TTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC-TTC
*
19406594 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATT
705 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** *
19406659 GGCACGTAGAAATATGAAGATGCACCTAAACCCACCTACCACCC-ATTGATCCACGGCTTGCGCA
770 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
19406723 TCCCGTCCCTCTAGTCGGCGTAGTGCCCGCCCG--C-CCG-CTCGCTCGTTTCTTCGG
835 TCCCGTCTCTCTAGCCGGAGTAGTGCACGCCCGCCCGCCGCCTCGCTCATTTCATCGG
*
19406777 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACGAGGGTTACGACAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-----AGC-
* ** * * * * *
19406841 GGATCGGTAGCACACAGAGGGGGACCCGATCGATTCTCGGGTTGCGCATCCCACCCCTCTAGCCT
60 --A--GGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
* * * * * **
19406906 GCTGGGTGCCCGCATGCTCGTTTCGTGGGTTGACCTAGACATATGGAGTTCATTCCCAGTCTAAG
121 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * * * *
19406971 C--AT--A---CA----GAGT-T--CATCGGACTGGACCGAGGGTTGTGACAGCACATGCTGGGC
186 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
19407022 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATTGCCAGAGCATCGTCGGAGAA
251 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * * *
19407087 CCTGACCGGCGACATTAGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGCA
316 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* ** *
19407152 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCAAAAAACCTCGAGAACTAACAC
381 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
19407217 CACCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTTG-AATG
446 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATG
* *
19407281 GGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATATTTTTGT
510 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
19407346 GCATGCCAAAAAAAATACAAGGATGACATCTACCAAGTTTGGGG-CAAAACTCTTTCCAAAAAAA
575 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
19407410 TTTTAAAAAATCCTGAACCGTAAAAAGTTT
640 TTTTAAAAAATCCTGAACCGCAAAAAGTTT
19407440 TTCCCAATCT
Statistics
Matches: 3431, Mismatches: 560, Indels: 396
0.78 0.13 0.09
Matches are distributed among these distances:
842 9 0.00
843 9 0.00
844 7 0.00
845 2 0.00
846 15 0.00
847 10 0.00
848 264 0.08
849 76 0.02
850 114 0.03
851 14 0.00
852 2 0.00
853 12 0.00
854 4 0.00
855 8 0.00
856 13 0.00
857 10 0.00
858 12 0.00
859 4 0.00
860 2 0.00
861 4 0.00
862 10 0.00
863 8 0.00
864 8 0.00
865 1 0.00
866 1 0.00
867 2 0.00
868 1 0.00
869 25 0.01
870 1 0.00
871 1 0.00
873 5 0.00
874 444 0.13
875 47 0.01
876 170 0.05
877 3 0.00
878 4 0.00
879 118 0.03
880 3 0.00
881 196 0.06
882 217 0.06
883 6 0.00
884 4 0.00
886 2 0.00
887 12 0.00
888 5 0.00
889 14 0.00
890 4 0.00
891 3 0.00
892 45 0.01
893 23 0.01
894 7 0.00
895 13 0.00
896 585 0.17
897 161 0.05
898 17 0.00
899 23 0.01
900 123 0.04
901 14 0.00
902 159 0.05
903 82 0.02
904 120 0.03
905 102 0.03
907 1 0.00
908 50 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAGCAGGTAG
CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGT
TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TAGCCGGAGTAGTGCACGCCCGCCCGCCGCCTCGCTCATTTCATCGG
Found at i:19406079 original size:26 final size:26
Alignment explanation
Indices: 19406049--19406101 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19406039 GTTGACTTAG
*
19406049 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
** *
19406075 GCATATGGAGTTAATTCCTAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
19406101 G
1 G
19406102 ATCGGACGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:19407880 original size:470 final size:470
Alignment explanation
Indices: 19406983--19407909 Score: 1392
Period size: 470 Copynumber: 2.0 Consensus size: 470
19406973 TACAGAGTTC
* * *
19406983 ATCGGACTGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTT
1 ATCGGACTGGACCGAGGGTTGTCACAGCACATGCTGGGCTCAGGCATGTGCTGGTACCACATTTT
** * *
19407048 TCTTCGTCAGGGCACCATTGCCAGAGCATCGTCGGAGAACCTGACCGGCGACATTAGGGTTCCGA
66 TCTTCGTCAGGGCACCATCACCAGAGCATCATCGGAGAACCTGACCGACGACATTAGGGTTCCGA
* * *
19407113 CGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
131 CGATCGGGGGGGCCGGGGGGTGTGCGCACAGGATGTGCAATGGGTGCTGGTACTTGGCCCATATA
* *
19407178 TTGGCCTCCTATCCCTCAAAAAACCTCGAGAACTAACACCACCTTAAAGAGCATTTGAGATTTTA
196 TTGGCCTCCTATCCCTCAAAAAACCCCGAGAACTAACACCACCTTAAAGAGAATTTGAGATTTTA
**
19407243 CAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGGTCACAAA
261 CAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
19407308 ATATTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATGAC
326 ATATTGTACACTTCGAGTTTTTAGCTCAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * *
19407373 ATCTACCAAGTTTGGGGCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGT
391 ATCTACAAAGTTTGGGGCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGT
19407438 TTTTCCCAATCTAAG
456 TTTTCCCAATCTAAG
* * *
19407453 ATCGGATTGGATCGAGGGTTG-CACCAGCACATGCTGGGCTCAGGCATGTGCTGGTACCATATTT
1 ATCGGACTGGACCGAGGGTTGTCA-CAGCACATGCTGGGCTCAGGCATGTGCTGGTACCACATTT
* * * * * *
19407517 TTCTTCGTCGGGGCACCATCATCGGAGCATCATCGGAGAACTTGACCGATGGCATTAGGGTTCCG
65 TTCTTCGTCAGGGCACCATCACCAGAGCATCATCGGAGAACCTGACCGACGACATTAGGGTTCCG
* * *
19407582 ACGATCGGGGGGGCTGGGGGGTGTGCTCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCATAT
130 ACGATCGGGGGGGCCGGGGGGTGTGCGCACAGGATGTGCAATGGGTGCTGGTACTTGGCCCATAT
** * *
19407647 ATTGG-CTCCCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTT
195 ATTGGCCT-CCTATCCCTCAAAAAACCCCGAGAACTAACACCACCTTAAAGAGAATTTGAGATTT
* * *
19407711 TCCACGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
259 TACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
19407776 AAATCTTGTACACTTCGAGTTTTTTGCTCAATTTTTTTGTGCATGCC-AAAAAAATAGAAGGATC
324 AAATATTGTACACTTCGAGTTTTTAGCTCAATATTTTTGTGCATGCCAAAAAAAATACAAGGATC
** * *
19407840 ATGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAATCGCAAAA
389 ACATCTACAAAGTTTGGGG-CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAA
19407905 AGTTT
453 AGTTT
19407910 CAAAAATTGT
Statistics
Matches: 408, Mismatches: 46, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
469 34 0.08
470 374 0.92
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (470 bp):
ATCGGACTGGACCGAGGGTTGTCACAGCACATGCTGGGCTCAGGCATGTGCTGGTACCACATTTT
TCTTCGTCAGGGCACCATCACCAGAGCATCATCGGAGAACCTGACCGACGACATTAGGGTTCCGA
CGATCGGGGGGGCCGGGGGGTGTGCGCACAGGATGTGCAATGGGTGCTGGTACTTGGCCCATATA
TTGGCCTCCTATCCCTCAAAAAACCCCGAGAACTAACACCACCTTAAAGAGAATTTGAGATTTTA
CAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATATTGTACACTTCGAGTTTTTAGCTCAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
ATCTACAAAGTTTGGGGCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGT
TTTTCCCAATCTAAG
Found at i:19416631 original size:26 final size:26
Alignment explanation
Indices: 19416595--19416647 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19416585 GTTGACTTAG
19416595 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19416621 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19416647 G
1 G
19416648 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19418402 original size:26 final size:26
Alignment explanation
Indices: 19418373--19418432 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
19418363 GTCGACTTAC
*
19418373 GCATACGGATTTCATTCCTAGTCTAA
1 GCATACGGATTTCATTCCCAGTCTAA
*
19418399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGATTTCATTCCCAGTCTAA
19418425 G-AT-CGGAT
1 GCATACGGAT
19418433 CGGACCGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 25 0.81
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGATTTCATTCCCAGTCTAA
Found at i:19419291 original size:26 final size:26
Alignment explanation
Indices: 19419255--19419307 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19419245 GTTGACTTAG
*
19419255 GCATACAAAGTTCATTCCGAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
* *
19419281 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19419307 G
1 G
19419308 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:19419672 original size:890 final size:885
Alignment explanation
Indices: 19416368--19433694 Score: 11772
Period size: 887 Copynumber: 19.1 Consensus size: 885
19416358 GCTCATGACA
* * * *
19416368 CACGGCTTGCGCAACTCGTCTCTCTGGCCGACGTAGT-------GCC-CGCCCACTCATTTCGTC
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCGCGCCCGCTCGTTTCGTC
* * ** *
19416425 GGTTGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAG
66 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG--CT---A-
* * * *
19416490 CAGGATTGGCAGCACGCAGAGAGGGACCCGACCGATCCCCCGCTTACGCATCCTGCCCCTCTGGC
125 C------GGCAGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG-CCCTCTGGC
* * *
19416555 TGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
183 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * **
19416620 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATCGAGGGTTGCGATAGCACATG-T-
248 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * *
19416682 ---TGGGGCATGTGCC-GGTGCTGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-ACTG
312 GGCTCGGGCATGT-CCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGTC-G
*
19416742 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-GGGGGGCCGGGGGGTGTGCGCACATGATG
375 GAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
19416806 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTC
440 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
19416871 ACA-CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAA
505 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19416935 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTGTTT
570 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** *
19417000 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCCTT-CGAA
635 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCGAA
* * * *
19417064 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGGGCCGT
699 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
19417129 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAG
764 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
19417194 GCATTGGCACATAGAAATATGAAGATGTGCCGAAACCCACCTACTACCCTATCGATC
829 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
19417251 CACGGCTGGCGCATCCCGTCTCTCTGGCGGACATAGTGCCCCCCCGCTCGCCTGCCCGCTCGTTT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCCCCCGC-CG-C-GCCCGCTCGTTT
* * *
19417316 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGGCTGCG
62 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTACG
* * **
19417381 GCAGCTCCCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATTCC-GCCCTTCCCGCCGGCTGA
127 GCAGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA-TCCTGCCC-TCTGGCCGGCTGA
* * **
19417445 GCGCCCGCACACTCGTTTCGTAGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATAC
190 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
19417510 GGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGGGGGTTGTGGCAGCACATGTTGGGCTCGGG
255 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * **
19417575 CATTTCCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGTATCGTCGGAGAACCTGA
320 CATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGTCGGAGAACCTGA
* * * * *
19417640 CCGTCGGTATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGA
385 CCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
19417705 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTT
449 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
19417770 TAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCTAGTAACCATTAAAGTGTCTGAAATGGGGACA
514 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* ** * *
19417835 CTTTTTTGAAATGACCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGA
579 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
19417900 CAACAAAAATTCAAGGATCATGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
644 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * * * *
19417965 AAAATCCCGAACAGCATAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGGCATGA
709 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
19418030 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGTATTGGCAT
774 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
**
19418095 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
839 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
19418142 CACGGCTTGCGCATCCCGGCTCTCTGGCC-AGCGTAGTG---CCCGCC-CGCCCGCTCATTTCGT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCCCCGCCGCGCCCGCTCGTTTCGT
* * * * * * * *
19418202 TGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCAGACCGGACCAAGGGTTGCGGCA
65 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTACGGCA
* * * * *
19418267 GCAGGATCCGCAGCACGTAGAGAGGGACCAGGCCGATCCCCGACTTGTGCAT-CTCGCCCCTTTG
130 GC---A--C-C--CA-G-AG-G-GGGACCCGACCGATCCCCGGCTTGCGCATCCT-G-CCCTCTG
* * * * * * * *
19418331 GTCGGCTGCGCG-CCGCCACACTTGTTTCGTGGGTCGACTTACGCATACGGATTTCATTCCTAGT
181 GCCGGCTGAGCGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
19418395 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCAGCAGCACTTG
245 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCACATG
* * * * * *
19418459 CTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGCCACCATCGTCGGAGGATCGCC
309 CTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGTC
* ** * * *
19418524 GAAGAACCTGACCGATGGCATTGGGGTTCCGGCGATC-----G--GGGGGGTTTGCGCACATGAT
374 GGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * * *
19418582 TTGCGATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCTTATCCCTCATCAAGCCTTGAGAACT
439 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
19418647 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGA
504 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
19418712 AGTGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
569 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
19418777 TTGTGCATGCCAA-AAAATATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAAATCCTTCCGA
634 TTGTGCATGCCAACAAAA-ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* ** * ** *
19418841 AAAAGTTTTAAAAAATCTTGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATCA-AAAATGAGTC
698 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT-AGAAAACGAGTC
* * * *
19418905 GTCTTGCCATGAAAATTCACGTGAAGGCTTCAGGGACCGTTGTATGAATTTACAAGTCATAAAAA
762 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
19418970 TGGCATTGGCAGGA-AGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATG
827 TGGCATTGGCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * *
19419029 CATGGCTGGCGCATCTCGTCTCTATGGCCGGCATAGTGCCCCCCGCCTATCTGCCCGCTCGTTTC
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCC--GC-GCCCGCTCGTTTC
** * * *
19419094 GTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAAACTAGACTGAGGGCTACGG
63 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTACGG
* **
19419159 CAGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCGCTCTCACCGGCTGAGC
128 CAGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCC-CTCTGGCCGGCTGAGC
* ** * *
19419224 GCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACAAAGTTCATTCCGAGTCTAAGCATACGA
192 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * *
19419289 AGTTCATTCCCATTCTAAGATCAGACTGGGCCGGGGGTTGTGGTAGCACATGCTGGGCTTGGGCA
257 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * ** *
19419354 TTTCCTGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTCGGAGTATCGTCAAAGAACCTGAT
322 TGTCCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGTATCGTCGGAGAACCTGAC
* *
19419418 CGGCGGCATTATGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGT
386 CGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
19419483 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
450 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
19419548 AAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC
515 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
19419613 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGCATTTTTTTGTGCATGCC
580 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
19419678 AACAAAAATACAAGGATTACT-TCTACCAAGTTTGGGG-CAAAAACTCCCTCTGAAAAAATTTTA
645 AACAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAAAAATTTTA
* * ** **
19419741 AAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATAAGTCGTCTTGCCATG
708 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
19419806 AAACTTCACGGGTAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
773 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19419871 CACAAAAATATGAAGATGTGCCTAAACCCACCTATCACCGTATCGATC
838 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
19419919 CATGACTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-CACCCGCTCGTTTCGT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCCGCGCCCGCTCGTTTCGT
* * * * * *
19419983 CGGTTGGCTTAGGCATACGAAATTCATTACCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCA
65 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTACGGCA
* *
19420048 GCAAGATCGGCAGCACGCAGAGTGGGACCCGATCGATCCCCAGCTTGCGCAT-CTCGCCCCTCTG
130 GC---A-C--C--CA-G-AG-G-GGGACCCGACCGATCCCCGGCTTGCGCATCCT-G-CCCTCTG
* * * *
19420112 GCCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTC
181 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* **
19420177 -AAG-AT-C--AG---------A--C------C--A---GACCGAGGGTTGTGAAAGCACATGCT
246 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCT
* * * * *
19420215 TGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTTGG
311 GGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGTCGG
* * * *
19420280 AGAACCTGACCGGTGGCA-TAGGGGTTTCGGCGATCGGGGGGGCCGGGTGGGTGTGTGCACATGA
376 AGAACCTGACCGGCGGCATTA-GGGTTCCGACGATC-GGGGGGCCGGG-GGGTGTGCGCACATGA
* *
19420344 TGTGCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
438 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
19420409 TCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
503 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
19420474 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTT
568 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
19420539 TTTGTGCATGCCAA-AAAAAGTACAGGGATCACGTCTACCAAGTTTTGGGCCAAAATTCCTTCCA
633 TTTGTGCATGCCAACAAAAA-TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * * *
19420603 AAAAAATTTTAAAAAATCTCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAAAAAACGAGTC
697 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
19420668 GTCTTGCCATGAAACTTCAC-TGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAA
762 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
19420732 TGACATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCAACCGCCTTATCGATC
827 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
19420791 CACGGCTTGCGCATCCCGTCTCTCTGGACGACGTAGTGCCCGCCCGTCCGTCTGCCCGCTCTTTT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCG-CCG-C-GCCCGCTCGTTT
* * * * * * *
19420856 TGTCGGTTGGCTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGGCTGAGGGTTGCG
62 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GG--GC-
* ** * * * *
19420921 ACAGCAGGATCGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCCGCCCTTT
123 -TA-C-GG--C---AGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCC-TC
* * * *
19420986 TGGCCGGCTAAGCGCCCGCATGCTTGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
179 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * **
19421051 TCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGTTTGGACCGAGGGTTGCGGCAGCACATG
244 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATG
* * *
19421116 CTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCG-C-CGG----A--G-C--A-T-T-GTC
309 CTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGTC
* ** * *
19421167 GGAGAACCTGACCGACGGCATTTTGGTTCC-AGCGATCGGGGGGCCAGGGGGTGTGCGCGCATGA
374 GGAGAACCTGACCGGCGGCATTAGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGA
* * *
19421231 TATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTTGAGAAC
438 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
19421296 TCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTA
503 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
19421361 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTT
568 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TT
* * * * * *
19421426 TTTT-TGCATGCCAACAGAAATACAAGGATCACGTCTAGCAAGTTTCGGGCCAAAAATCCATCTG
632 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * * *
19421490 AAAAAATTTTAAAAAATCCTGAACGGCAAAAA-TTT-ATGAAAATTGGGAAAAATAGAAAACGAG
697 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA--AAAATCGTGAAAAATAGAAAACGAG
*
19421553 TTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
760 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
19421618 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATC
825 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
19421679 CATGGCTTGCGGATCCCGTCTCTCTGGCCGACATAGTGCTCGGCTGCTCGCC-CGCCCGTTCGTT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC-C--C--CCCGCCGCGCCCGCTCGTT
* * **
19421743 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGC
61 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GG--GC
* * * *
19421808 GGTAGTAGGATCAGCAGCATGCAGAGGGGGACTCGACCGATCCCCGGCTTGCACAT-CTCGCCCT
123 --TA--CGG--CAGCA-C--CCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCC-
* * * * *
19421872 TTTGGCTGGCTGAGCGCCCGCACGCTTGTTTTGTCGGTTGACTTAGGCATACGGAGTTCATTCCC
177 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* ** * * *
19421937 AATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTGCGACAGCACA
242 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACA
* * * *
19422002 TGCTTGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGTAGCATCG
307 TGCTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C----CATCG
*
19422067 TCGTAGCATCGTCGTAGCATCGTCGGAGAACCTGACCGGCGGCATTAGTGTTCCGGA-GATCGGG
361 TCG--G-A-----GT---ATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCC-GACGATCGGG
* * * *
19422131 GGGCTGGGGGGTGTGCGCACATGATGTGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCTCCC
414 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
19422196 TATCCCTTATGAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGC
479 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
19422261 TG-CAGTAGCTATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTAACAAAATCTTGTAC
544 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
19422325 ACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAAACTAGAAGGATCATGTCTACAAA
609 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
* * * ** *
19422390 GTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCGAAAA
674 GTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* * *
19422455 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTT
739 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
19422520 TATGAATTTGCAAGCC-TAAAAAATGGCATTGGCACACAGAAATATGAAGATGTG-CTAAACCCA
804 TATGAATTTACAAGCCAT-AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
19422583 CCTACCACCCTATCGATC
868 CCTACCACCCTATCGATC
* * * **
19422601 CACGGCTTGTGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCC-CACCCGCTCGTTTAAT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCCGCGCCCGCTCGTTTCGT
* *
19422665 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTCCGGTA
65 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG---C--TA
* ** * *
19422730 GCAGGATCGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCGTCCCTCTGG
125 -C-GG--C---AGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG-CCCTCTGG
* * * * **
19422795 CTGGCTGAGCACCCGCACGCTCGTTTCATGGGATGACTTAGGCATACGGAGTTGTTTCCCAGTCT
182 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
19422860 AAG-AT-C--AG---------A-TC---G---A-ACT-----GAGGGTTACAGTAGCACATGCTG
247 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * * * * **
19422899 TGCTCGAGCATGTCCTGGTGCCGTATTTTTCTTTGTCGGGTCACCATCGCCTGAGCATCACCGGA
312 GGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGTCGGA
* * ** *
19422964 GAACCTAACCGGCGGCATT-GGTGTTTCGGTGATCGAGGGGGCTGGGGGGGTGTGCGCACATGAT
377 GAACCTGACCGGCGGCATTAGG-GTTCCGACGATCG-GGGGGC-CGGGGGGTGTGCGCACATGAT
* * *
19423028 GTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACT
439 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
19423093 CGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
504 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
19423158 AATTGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGGATTTTT
569 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTT
* * **
19423223 TTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGGGGTAAAAATCCTTCCGA
633 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * * * *
19423288 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTGG
698 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
19423353 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAAT
763 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19423418 GGCATTGGCACATAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCGATC
828 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * *
19423476 CATGGCTTGCGCATCCCGTCTCCCTGGCCGGCGTAGTGCCCGCCGACCGCCCGCCGCTTGTTTTG
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCG-CCGCGC-CCGCTCGTTTCG
* *
19423541 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAC-G-
64 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTACGGC
* ** * ** * * *
19423604 -G----TAGAGGGACACCTGGTCGATCCCCAGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCG
129 AGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG-CCCTCTGGCCGGCTGAGCG
* * *
19423664 CCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACGGA
193 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * ** *
19423729 GTTCATTCTCAGTCTAAGATCGGACCGAACTAAGGGTTGCGACAGTAGGATCGACAACACGTAGA
258 GTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT--G-C-G--GCA--G-C-ACA--T-G-
** * * * * * ** * *
19423794 GGGGGACCCCGTCGAT-CCCCGGCCTG-CGCATTCCACCCCTCTGGCCGGTTGAGCGCCCGCACG
309 CTGGG-CTCGGGC-ATGTCCTGG--TGCCGCATT-----TTTCT--TC-GTCG-G-G---GCAC-
* * * ** * * *
19423857 C-TTGTTTCATGG-GT-TGACTTAGGCATACGAAGTTCATTCGCAGTCTAAGCA-TACGAAGTTC
356 CATCG--TC--GGAGTAT--CGTCGG---A-GAACCTGA--C-C-GGC--GGCATTA-G--G---
* * * ** * * * ** * * *
19423918 ATTCCTAGTCTAAGATTGAATTGGACCGAGGGTTACGACAGCACA-AACTG-G-GCTCGG-GCAT
399 GTTCC--G---ACGATCG--GGGGGCCGGGGGGTGTG-C-GCACATGA-TGTGCGATGGGTGC-T
* * * ** ** * * * * * * * * * ***
19423979 -GTGC-TGGTGCCATAT-TTTTCTTCGTCGAGGCAC-CATC--GCC-GGGGCATCGCCAGAGAAC
453 GGTACTTGG-CCCTTATATTGGC--CCCCTA-TCCCTCATCAAACCTCGAG-AAC-TCACACCCC
* ** * * * * *** * *** *
19424037 CTGATCGACGACA-TTGGGGTTCCGGTGATCGGGGGGGCCCGGGGGGTGCGCACATGATGTACGA
512 CTTAAAGA-G-CATTTGAGATT----TTA-CAGGTTTG--CTGCCAGT-AGC-C---AT-TA--A
* * * * * * * * ** ** * * * *
19424101 TGGGTGCGGGTACT-TGG-CCCTTATATTGGCCCCTTATCCCTCATC-AAACCTCGAAAAC-TCA
560 AGTGT-C-TGAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAAATCTTGTACACTTC-
* * ***
19424162 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTA-AAGTGTCTGAA
614 GA----GTT-TTTAGC---TGA-ATTTT-----TTTG-TG-CA-T-GCCA--ACAA-------AA
**** * * ** **** * ** * ****
19424226 ATGGGGACACTTTTTTCAAATGGTC-ACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTT
652 AT----ACA--AGGATC--AT-GTCTACCAAGT-TTG-GGGCCAAAAATCCTT--CCGAA-AAAA
*** * ** * *
19424290 TTGTGCATGACAAAAAAAATAAAAGGATCACCTCTACCAAGCTTGGGGCCAAAAATCTTTTCGAA
703 TT-T---T-----AAAAAAT--CCCGA--ACCGC-AAAAAG-TT----TCAAAAATC--GT-GAA
* ** *** *** * * **
19424355 GAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAA-ATCATGAAAAATAGAAAAC--AAGT
746 -AAA---TAGAAAA---CGAGTCGT--CTTGCCATGAAACTTCACG-----T-GAAGGCTTAAG-
* * * * * * * * * *** *
19424417 CG-TC-TTGCCATGAAACTTCACGGGAAGGC-T--TAAGGGACCATT-GTATGA-ATTTACATGC
795 GGACCATTG-TATG-AA-TTTAC---AAGCCATAAAAATGG--CATTGGCA-CACAGAAATATG-
*
19424475 CATAAAAATGGCATTCGCACACATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
850 ---AAG----------------------------ATGTGCCTAAACCCACCTACCACCCTATCGA
*
19424540 TG
884 TC
* * * * ** * * *
19424542 CACGACTTGTGCATACTGTCTCT-TTACC--CG--GTG-----TG--GTGCCCGCTCGTTTCATC
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCGCGCCCGCTCGTTTCGTC
** *** *
19424595 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGACTGAGGGTTGCGGTAG
66 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GG--GC--TA-
* ** ** ** * *
19424660 TAGGATCAATAGCATGCAGAGGGGGACCCGGTCGATCCTTGACTTGCGCATCCCGTCCCTCTGGC
125 -CGG--C---AGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG-CCCTCTGGC
** * * * **
19424725 CAACTGAGCTCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTGTTTCCCAG--T-
183 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
19424787 --C-TA---AG---A-T--C-G-----GATCAGACT-----GAGGGTTACAGCAGCACATGCTGT
248 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * **
19424829 GCTCGGGCATGTCCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAG
313 GCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGTCGGAG
* ** * * *
19424894 AACCTGACCGGCGGCATTGGGGTTTTGATGATCGGGGGGGCCGACGGGGTTGTGCACACATGATG
378 AACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCG--GGGGGTGTGCGCACATGATG
* * *
19424959 TGTGATGGGTGCTGGTACTTGGCCCTT-TATTGGACCCCTAT-CCTCATCAAACGTCGAGAACTC
440 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
19425022 CCACACCCCTGAAAGAGCAATTTGGAGATTTTACAAGTTTGCTAACCAGTAGACATTAAAGTGTC
505 ACAC-CCCCTTAAAGAGC-ATTT-GAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTC
* *
19425087 TGAAATGGGGGCAC-TTTTTCAAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
566 TGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
19425150 TTTTTAGTGCATTGCCAAAAAAAATAACAAGGA-CACGTCTTACCAAAAG-TT-GGGCCAAAACT
630 TTTTTTGTGCA-TGCCAACAAAAAT-ACAAGGATCATGTC-TACC--AAGTTTGGGGCCAAAAAT
* ** *
19425212 CCTTCCCAAAAAATTTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCATGAAAAATAGAA
690 CCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * *
19425277 AATGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAAGGACCACTGTATGAATTTACAAGC
754 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** * *
19425342 CATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGA
819 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
19425407 TC
884 TC
* * * * * *
19425409 CACGGCTTGCGCATCCTGTCTCTCTGGCTGGCGTAGAGCCCGCCTGCC-CGCCCGCTAC-TTTCA
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCCGCGCCCGCT-CGTTTCG
* ** * *
19425472 TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCAGC
64 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCT--A-C
* * **
19425537 AGCAGGATCGGCAGCAAGCAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTG
126 GGCAGCA-C--C--C-AG---AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG-CCCTCTG
* * * *
19425602 GCCAGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATC
181 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
19425667 TAAG-AT-C--AG---A----C---C--AGA-C---C---A---AGGGTTGCGGCAGCACTTGCT
246 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCT
* * * *
19425706 GGGCTCGAGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGG
311 GGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGTCGG
* * *
19425771 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGACTGGGGGGGATGTGCGCACATGA
376 AGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGG-C-CGGGGGG-TGTGCGCACATGA
*
19425836 CGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
438 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
19425901 TCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
503 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
19425966 AAATGGGGACACTTTTTTCAAATAGTCACAGAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
568 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
19426031 TTTGTACATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCGAAAACTCTTTCTGA
633 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
** * *
19426096 AAAAATTTTAAAAAATCTAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATGGAAAATGAGTCG
698 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
19426161 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAAT
763 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19426226 GGCATTGGCATGA-AGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATC
828 GGCATTGGCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * ** *
19426284 CACGGCTTGCACATCCCGTCTCTCTAGCCGACGTAGTGACTGCCCGCC-CGCCCGCTCGTTTCAT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCCCCCGCCGCGCCCGCTCGTTTCGT
** * * *** *
19426348 CAATTGGCTTAGGCATACGGAGTTAATTCTCCA-TCTAAGATCAAATGGGACCGAGGGTTGCCAC
65 CGGTTGGCTTAGGCATACGGAGTTCATTC-CCAGTCTAAGATCAGACCAGACCGA-GG--GCTAC
* * * * * * *
19426412 AGCAGGATTGGCCGCATGCAGAGGGGGACCTGATCGATCCCTGGCTTGAGCATCCAGCCCTTCTG
126 GGCAGCA-----C-C---CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCC-TCTG
* * * * * *
19426477 GCCGACTAAGCGCTCGCATGCTCAG-TTCGTGGGTTGACCTAGGCATACAGAGTTCATTCCCAGT
181 GCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * **
19426541 CTAAGCATACGGAGTTCATTCCCATTCTAGGATC-GAACCAGACCGAGGGTTGCGGCAGCACATG
245 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTGCGGCAGCACATG
* * * * * * * * *
19426605 CTAGACTCGGGCATGTGCTGGTGCTGCA-TTTTCTTCGCCAGGGCGCCATCG-CATGAGCA-CAG
309 CTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGTATC-G
* * * *
19426667 CCGGAGAACTTGACCGGCGGCATT-GGGCTTCCGATGATCGGGGGGGTC-GGGGGTGTGCGCACA
372 TCGGAGAACCTGACCGGCGGCATTAGGG-TTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACA
* * *
19426730 TGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCCAG
435 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * **
19426795 AACTCACACCCCCTTTAAGAGCATTTGAGATTTTACAGATTTACTGCCAGTAGTAATTAAAGTGT
500 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
19426860 CTGAAATGGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAA
565 CTGAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
19426925 TTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCTAGTTTGGGGCCAAAAATCCTT
629 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTT
* * * * * *
19426990 TCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAGAATAAAAAATGA
694 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * * * *
19427055 GTCATCTTGCCATGAAACTTCACGGGAAGGATTAAGGGAACATTGTATGAATTTTCAAGCCATAA
759 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * * *
19427120 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCTTGAACCCACCTAGCACCCTATCGATC
824 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
19427182 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGTCCGTAAGCTCGCTCGTTT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCG-CCG--CGCCCGCTCGTTT
* *
19427247 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCCGATCAGACCGAGGGTTGC
62 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCGA--G--G-
* * * * *
19427312 AGCAGTAGGATCGACAGCACACAGAAGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCT
121 -GC--T---A-CGGCAGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG-CCCT
* * * * * * * *
19427377 CTGGTCGGTTGAACGCCTGCACGCTCGTTTCGCGGGTTGACGTAGGCATACAGAGTTCATTCCTA
178 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * *
19427442 GTCTAAGCATACGGAGTTCATTCCTAGTTTAAGATCAGACTGGATCGAGGGTTGCGACAGCACAT
243 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACAT
* * ** ** * * *
19427507 GCTAGGCTTGGGCATGTGTTGGTGCCAAATTTTTCTTC-ACCGGGCACCATCG-CTGGAGCATCG
308 GCTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGTATCG
* * * * **
19427570 CCGGAGAAGCTGACCGACGGCATTGGGGTTCCGGTGATCGGAGGGGCCAGGTGGGGTGTGCGCAC
372 TCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGG-GGGGCC-GG-GGGGTGTGCGCAC
* * * * * **
19427635 ATGATGTACGGTGGGTGCCTTGTACTTGGCCGTTATATTGGCCCCCTATCCCTCACCAAACCTTA
434 ATGATGTGCGATGGGTG-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
19427700 AGAAATCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
498 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
19427765 GTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGA
563 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * ** *
19427830 ATTTTTTTGTGCATTCCAACAAAAATAAAAGGATCACCTCTACCTAGTTTGGGGCCAAAAATCCT
628 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCT
* * * *
19427895 GT-CGAAAAAA-TTTAAAAAATCCTGAAACCGTAAAATGTTTCGAAAAATCGTGAAAAATAAAAA
693 -TCCGAAAAAATTTTAAAAAATCCCG-AACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAA
*
19427958 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCC
755 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** * * *
19428023 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCTTGAACCCACCTAGCACCCTATCGAT
820 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
19428088 C
885 C
*
19428089 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCATTT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCG-CCG-C-GCCCGCTCGTTT
*
19428154 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTC-GACTAGACCGAGGGTTGC
62 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCGA-GG--GC
* ** * * * *
19428218 AGCAGCAGGATTGGCAGCATGCAGAAGGGGACCTGACCGATCCCTGGCTTGCGCATCCCGCCCCT
123 --TA-C------GGCAGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG-CCCT
* ** * * * *
19428283 CTGGCCGGTTGAATGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA
178 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * *
19428348 GTCTAAACATACGGAGTTCATTCCCAGTCTCAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
243 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACAT
* * * *
19428413 GCTGGGCTCAGGCATGTGCC-GGTGCTGCATTTTTCTTCG-CTGGGGCACCATCATCGGAGCATC
308 GCTGGGCTCGGGCATGT-CCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGTATC
* *
19428476 GTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCAACGGGGGGGTTTGCGC
371 GTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGG-C--C-GGGGGGTGTGCGC
* * * * * *
19428541 ACATGATGAGCGATGGGTGCTAGTACTTGGCCCATATTTTGGCCCCCTATCGCTCATCAAACCTT
432 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
19428606 GAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCACTAAAG
497 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
19428671 TGTCTGAAATGGGGACACTTTTTTCAAATGGGCAAAAAATCTTGTACACTTCGATTTTTTAGCTG
562 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * *
19428736 AATTGTTTTGTGCATGCCAAAAAAAATATAAGGATCATGTCTACCAAGCTTAGGGCCAAAAATCC
627 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC
** * * ** *
19428801 TTCCGAAAAAATTTTAAAAAATCATGAACCGCAAAAATTTTTAAAAATAATGAAAAATAGAAAAT
692 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
19428866 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
757 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** *
19428931 AAAAATGGCATTGGCATGCA-AAATATGAAGATGTG-CTAAACCCACCAACCACCCTATCGATC
822 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
19428993 CAACGGCTTGCGCATCCTGTCTCTCTGGCGCGACGT-GTTTGCCCGCCCGTCCGCCCACCCGCTC
1 C-ACGGCTTGCGCATCCCGTCTCTCTGGC-CGACGTAG--TGCCC-CCCG-CCG--CGCCCGCTC
* ** * * * *
19429057 ATTTCGTCGGTTGGCTTAGGCATACAAAGTTCAATCCCAGTCTAAGATCA-AACTGAACTGAGGG
58 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGA---
* * * * *
19429121 TTGTGGTACCAGGATCGGCAGCACGCAGAGGGGGA-CCGACCGATCCCTGGCTTACGCATCCCGC
119 --G-GG---C--TA-CGGCAGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGC
*
19429185 CC-CATTGGCCGGGCTGAGCG-CCGCACGCCTCGTTTCGTGGGTTGA-GTAGGCATACGGAGTTC
175 CCTC--TGGCC-GGCTGAGCGCCCGCACG-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
19429247 ATTCTCAG-CTAAG-AT-C--AG---A----C---C--A-A-C---C---A---AGGGTTGCGGC
236 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGC
** * *
19429284 AAGCACATGCT-GGCTCGACCATGTGCTGGTG--GCA-TTTTCTT-GACGGGG--CCATCCAG-C
301 -AGCACATGCTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-C-GTC
* * * * *
19429341 GAAGCATCATC-GAGAACCTGACCGGCGGCATT--GGTTCC-ATCGATC-GGGGTCC-CGGGGTG
363 GGAGTATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGA-CGATCGGGGGGCCGGGGGGTG
19429400 TGCG-ACA--ATGTGCGATAGGGTGCTGGTACGTTGGCCCTTATATTGG--CCCTATCCCT-ATC
427 TGCGCACATGATGTGCGAT-GGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * * *
19429459 -AACCTCAAGAACTCTCACCACATTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCC
490 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19429523 ATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTT
555 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
19429588 TTAGCTGAATTTTTTTGTACATGCCATA-AAAAATACAAGGATCATGTCTACCAAGCTTGGGGCC
620 TTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
* * * * *
19429652 AAAACTCCTTCCGAAAAAATTTTAACAAATCCCGAACCGTAAAAATTTTCAAAAATCATGAAAAA
684 AAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
*
19429717 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTA
749 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** * *
19429782 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACGCACCAACCACCCT
814 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
19429847 ATCGATC
879 ATCGATC
* * * *
19429854 CACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCTGACCGTCCGCC-CGCCCGCTCATT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC---CC--CCGCCGCGCCCGCTCGTT
*
19429918 TCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACC-GAACCGAGGGTT
61 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACCGA-GG--
* **
19429981 GCGATAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTTGGCTT-CGCAT-CTCGCC
121 GC--TA-C-GG--C---AGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-G-C
* * * * * *
19430044 CCTTTGGTCGGCTGAGCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
175 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* ** * * **
19430109 CCAGTCTAAG-AT--TGA-ACCGA-ACCGAGGGT-TGCGATAGCAGGA-TCGGTAGCACGCAGAG
240 CCAGTCTAAGCATACGGAGTTC-ATTCCCA--GTCTAAGAT--CA-GACT-GG-A-C-CG-AG-G
* * * * * ** *
19430167 G--G-GG-ACCCGACCGATCCTTGGCTTC--GCA--T-CT--CGCC-CCTTTGGC--CGGCTGAG
293 GTTGCGGCA-GC-A-C-ATGCTGGGC-TCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTC-G-G
* * * * ** ** * * * *** * *
19430218 CGCCCGCA-CGCTC--A-TTTCGTGGGTTAAGTTAGGCATACGGAGTTCATTCCCAG-T-CTAAG
351 GGCAC-CATCG-TCGGAGTATCGTCGGAGAACCT--G-A-CCGGCG-GCATT-AGGGTTCCGACG
* * ** * * * * * * *
19430277 ATCGGACCGGACCAAGGGTTGCAGCAGCACATGCTG-G-GCTCGG-GCAT-GTGCTGGTGCCGCA
408 ATCGG--GGGGCCGGGGGGTG-TGC-GCACATGATGTGCGATGGGTGC-TGGTACTTG-GCC-C-
* * * *** * * * * ** *
19430338 TTTCTCTTCGCTGGGGC-A-CCATCATCGGAGCATCGTCGGAGAACCTGATCAGCGACATT---G
465 -TTATATTGGC--CCCCTATCCCTCATC--A--AACCTC-GAGAA-CTCA-CA-CCCCCTTAAAG
** *** ** * * * ** **
19430398 -GGGTTTCGACGATCGGGGAGGCCGAGGGGGTGTCCGCACATGATTTGCGA-T-GGGTG-CTGGT
519 AGCATTT-GA-GAT--TTTA---C-A-GGTTTG-CTGC-CA-G--TAGCCATTAAAGTGTCTGAA
** * * ** ** **
19430459 ATTTGG-CCCTTATATTGGCCCCTATCCCTCATC-AAA-CTTGAGGAACTCACAC-TC-CCTTAA
570 ATGGGGACACTT-T-TT---TCAAAT-GGTCA-CAAAATCTT---G---T-ACACTTCGAGTT--
*** * ** * *
19430519 AAGAGCCATTTGAATTTTACAGGTTGCTGCCAGTTAGCCATTAAAAGTGGTCTTAAATGGGGA-C
619 TTTAG-C---TGAATTTT----TTTG-TG-CA--T-GCCAACAAAAAT--AC---AA---GGATC
* ** ** * ** * *** ***
19430583 AT-TTTTTCAA-AAT--GGTCACAAAATCCTT--GTACACTTCGATTTTTAGCTGAATTGTTTTG
663 ATGTCTACCAAGTTTGGGGCCA-AAAATCCTTCCG-A-A---AAAATTTTA----AA-AAATCCC
** * ** * ** * *
19430642 GTGCATGCAAAAAAAATACAAGGATCATGTCTACCAAAGCTTAGGGCCAAAA--A-TC--CTT-C
717 GAAC-CGC-AAAAAGTTTCAAAAATC--GT-GA--AAA--ATA--G--AAAACGAGTCGTCTTGC
* ** * * ** ** * ** ** * ** ***
19430701 TGAAAAAATTTTA--AAAAATCATGAACCGCAAAAATT-TTTGAAAATA-ATGAAAAATAGAAAA
769 -CATGAAACTTCACGTGAAGGC-TTAA--GGGACCATTGTATGAATTTACA--AGCCATA-AAAA
* * * * * * ** *** ** * *
19430762 CGAGTCGTCTTGC-CA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
827 TG-G-CAT-TGGCACACAGAAA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCACC
**
19430825 C-AT--AAA
877 CTATCGATC
* * * ***** * ** * * * * **
19430831 AATGGCATTG-GCAT-GCAAAAATAT-GAAGA--T-GTGCCTAAACCCACCAACCACCCTATCGA
1 CACGGC-TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC---CCCCGCC--GCGCCCGCTCG-
** * * * ** * *** **** * *
19430890 TCCACGGCTTGCGCATCCTGTCTCTCTGGCCGAC-GTGTTGCCCGCCC-GTCCGCCCACCCG-CT
59 T-TTC-G--T-CG-GT--TGGCT-T-AGGCATACGGAGTT-CATTCCCAGT-CTAAGATCAGAC-
** ***** * ** * * ***
19430952 CATTTCGTCG-GTTGGCTTA-GGCATACAAAGTTCAATCCCAGTCTAAGATCAAACTGAACTGAG
111 CA-GAC--CGAG--GGC-TACGG----C--AG--C-A-CCCAGAGGGGGACCCGACCGATC-CCC
* * * * * * ** * * *
19431015 GGTTGTGGTACCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCC
159 GGCT-T-G---C-GCATC--CTGCCCTCTG-GCCGG--CTGAGCG--CCC--GC--ACGC-T-CG
** * * ** * * ** ** * ** *
19431080 TCCCCATTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT-TGAGT-TAGGCATACGGAGTT
205 T-TTCGTGGGTTGACTTAG-G--CATACG-GAG-TTCAT---TCCCAGTCTAAGCATACGGAGTT
** ** * * ** * *
19431143 CATTCTTAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCACATGCTATGCTCGAGCATGTG
261 CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTC
* ** * ** * *
19431208 CTGGTGTCGCATTTTTCTTCACCGGGGCACCATCG-CTGGAGCATCACCGAAGAACCTGACCGAC
326 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGTATCGTCGGAGAACCTGACCGGC
* * * * *
19431272 GGCATTAGGGTTCCGGCGATCGGGGGACCGGGGGGTGTGCACACA-AATGTGCGATAGGTGCTGG
390 GGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
19431336 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTTGAGAAGTCACACCCCCTTAAAGA
455 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
19431401 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
520 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * *
19431466 TCAAATGGTTACGAAATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
585 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
19431531 AAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
650 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
19431596 ACAAACGGCAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTC
715 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
19431661 ACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACATAGAA
780 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
19431726 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
845 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
19431767 CACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCTGCCCGCCCACTCATTT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCC-G--CGCCCGCTCGTTT
* * ** * **
19431832 CGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGATTGAGGGTTCCG
62 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG---C-
* * * * * *
19431897 GCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTTCACATCCCCGCCCCT
123 -TA-C------GGCAGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCTG-CCCT
* * * * *
19431962 CTGGCTGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCA
178 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
19432027 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGA
243 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------TGGA
* * * * *
19432092 CCAGACCGACGGTTGCAGCAGCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTCTCTTC-
287 CC-GA--G--GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCG
* * * * * * * * *
19432156 TCCGAGGCACCATCGCCAGAGCATCGCCGAAGAACCTGACCGGCGACATTGGGGTTTCGACGATT
347 T-CGGGGCACCATCGTCGGAGTATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGA-T
* * * * *
19432221 GGGGGGGTCGGGGGG-GTGTCTGCACATGATGTGTGATGGGTGCTGGTATTTGGCCCCTATATTG
410 CGGGGGGCCGGGGGGTGTG-C-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
19432285 GCCCCCTCTCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAG
473 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
19432350 GTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTAAAATGGCCACAAAATC
538 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
19432415 TTGTACACCTCGAGTTTTTAGTTGAAGTTTCTTGTGCATGCCAACAAAAATACAAGGATCACGTC
603 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
* * * * * * *
19432480 TACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAAAAGTCTCGAGCCGCAGAAAG-TT
668 TACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* * * * * *
19432544 CTAAAAATCATAAAAAATAGAAAATGAGTTGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGTG
733 C-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * * *
19432609 ACCACTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCA-AGTAGAAATATGAAGATGTTCCA
797 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CAGAAATATGAAGATGTGCCT
*
19432673 AAACCCACCTACCACCCTATTGATC
861 AAACCCACCTACCACCCTATCGATC
* * * * *
19432698 CACGGCTTACGCATCCCATCTCTCTAGCTGATGTAGTGCCCGCCCGCC-CGCCCGCTCACTCGTT
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCCGCGCCCG----CTCGTT
* * * * * *
19432762 ACGTTGGTTGGCTCAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGATC-GAACCAAGGGTTG
61 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACC----G-AG
* ** * * * * *
19432826 CGGCATCAGGATCGGTAGCATGCAGAGGGGGACTCGATCGATCCCTGGCTTGCCCATCCCGCCCC
120 -GGC-T----A-CGGCAGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG-CCC
* *
19432891 TTTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
177 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
19432956 AG--T---C-TA---AG---------A-TC---G----GACTGGACCGAGGGTTACGGTAGCAAA
242 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACA
* * * ** * *
19432995 TGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGTGCCATCGTCGGAGCATCA
307 TGCTGGGCTCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCG
* * * * * * *
19433060 TCGGAGAACTTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCAAGGTGGTGTGCACACA
372 TCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACA
* *
19433125 TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAG
435 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
19433190 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGT
500 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
** * *
19433255 CTGAAATGAAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAG
565 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
19433320 TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTTACCAAGGTTTGGGGCCAAAAACTCC
630 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC-TACCAA-GTTTGGGGCCAAAAA-TCC
* * *
19433385 TTCCG-AAAAATTTTAAAAAA-CATCGAACCACAAAAAGTTTCAAAAATCATG-AAAATAG-AAA
692 TTCCGAAAAAATTTTAAAAAATC-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * * *
19433446 CGAGTCGTCTTGCCAAGGAACTTCACGTGAAGGCTTAA-GGATCGTTGTATGAATTTACAAAGCC
756 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAG-C
* ** *
19433510 CATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGA
819 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
19433575 TC
884 TC
* ** * * * *
19433577 CACGGCTTGCGCATCCCATCTCTCTGGTTGGCATAGTGCCCGTCTGCCCGCC-CAGGCTGCCTCG
1 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC--C--CCCGCCGC-GCCCG-CTCG
*
19433641 TGTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
59 T-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
19433695 GGAACAAGGG
Statistics
Matches: 13087, Mismatches: 2226, Indels: 2263
0.74 0.13 0.13
Matches are distributed among these distances:
852 3 0.00
853 3 0.00
854 1 0.00
855 2 0.00
857 24 0.00
858 216 0.02
859 356 0.03
860 48 0.00
861 47 0.00
862 17 0.00
863 18 0.00
864 9 0.00
866 1 0.00
867 51 0.00
868 3 0.00
869 8 0.00
870 50 0.00
871 10 0.00
872 401 0.03
873 416 0.03
874 230 0.02
875 443 0.03
876 195 0.01
877 179 0.01
878 440 0.03
879 437 0.03
880 83 0.01
881 52 0.00
882 269 0.02
883 282 0.02
884 26 0.00
885 11 0.00
886 16 0.00
887 848 0.06
888 519 0.04
889 54 0.00
890 569 0.04
891 402 0.03
892 67 0.01
893 11 0.00
894 87 0.01
895 294 0.02
896 7 0.00
897 154 0.01
898 349 0.03
899 118 0.01
900 87 0.01
901 69 0.01
902 89 0.01
903 299 0.02
904 52 0.00
905 81 0.01
906 547 0.04
907 763 0.06
908 55 0.00
909 6 0.00
910 17 0.00
911 15 0.00
912 12 0.00
913 18 0.00
914 13 0.00
915 7 0.00
916 2 0.00
917 23 0.00
918 176 0.01
919 14 0.00
920 15 0.00
921 25 0.00
922 76 0.01
923 278 0.02
924 164 0.01
925 14 0.00
926 12 0.00
927 28 0.00
928 104 0.01
929 29 0.00
930 87 0.01
931 536 0.04
932 10 0.00
933 12 0.00
934 8 0.00
935 17 0.00
936 43 0.00
937 39 0.00
938 24 0.00
939 14 0.00
940 18 0.00
941 9 0.00
942 9 0.00
943 8 0.00
944 11 0.00
945 18 0.00
946 7 0.00
947 16 0.00
948 22 0.00
949 19 0.00
950 8 0.00
951 6 0.00
952 19 0.00
953 8 0.00
954 18 0.00
955 6 0.00
956 6 0.00
957 7 0.00
958 9 0.00
959 24 0.00
960 4 0.00
961 9 0.00
962 6 0.00
963 11 0.00
964 21 0.00
965 24 0.00
966 15 0.00
967 12 0.00
968 19 0.00
969 5 0.00
970 12 0.00
971 3 0.00
972 14 0.00
973 29 0.00
974 7 0.00
975 4 0.00
976 8 0.00
977 23 0.00
978 11 0.00
979 7 0.00
980 17 0.00
981 7 0.00
982 10 0.00
983 13 0.00
984 20 0.00
985 7 0.00
986 14 0.00
987 13 0.00
988 12 0.00
989 7 0.00
990 6 0.00
991 22 0.00
992 32 0.00
993 39 0.00
994 29 0.00
995 8 0.00
996 9 0.00
997 5 0.00
998 6 0.00
999 5 0.00
1000 6 0.00
1001 6 0.00
1002 14 0.00
1003 7 0.00
1004 5 0.00
1005 4 0.00
1006 11 0.00
1007 26 0.00
1008 18 0.00
1009 13 0.00
1010 20 0.00
1011 28 0.00
1012 20 0.00
1013 18 0.00
1014 14 0.00
1015 16 0.00
1016 23 0.00
1017 11 0.00
1018 1 0.00
1019 4 0.00
1020 4 0.00
1021 2 0.00
1022 1 0.00
1023 6 0.00
1024 359 0.03
1025 436 0.03
1026 398 0.03
1027 614 0.05
1028 434 0.03
1029 612 0.05
1030 452 0.03
1031 448 0.03
1032 520 0.04
1033 437 0.03
1034 298 0.02
1035 390 0.03
1036 411 0.03
1037 337 0.03
1038 331 0.03
1039 400 0.03
1040 390 0.03
1041 281 0.02
1042 338 0.03
1043 328 0.03
1044 291 0.02
1045 338 0.03
1046 320 0.02
1047 267 0.02
1048 512 0.04
1049 184 0.01
1050 346 0.03
1051 287 0.02
1052 360 0.03
1053 157 0.01
1054 233 0.02
1055 514 0.04
1056 197 0.02
1057 218 0.02
1058 216 0.02
1059 279 0.02
1060 367 0.03
1061 234 0.02
1062 173 0.01
1063 203 0.02
1064 122 0.01
1065 211 0.02
1066 230 0.02
1067 138 0.01
1068 238 0.02
1069 139 0.01
1070 83 0.01
1071 183 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCGCGCCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTACGGCAG
CACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTC
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGTCGGAGAACCTGACCGGCG
GCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
Found at i:19421059 original size:26 final size:26
Alignment explanation
Indices: 19421030--19421082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19421020 GTTGACTTAG
19421030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19421056 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19421082 G
1 G
19421083 ATCGGTTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19421688 original size:888 final size:887
Alignment explanation
Indices: 19420154--19423751 Score: 4157
Period size: 888 Copynumber: 4.0 Consensus size: 887
19420144 GTTGACTTAG
* ** * ** *
19420154 GCATACGGAGTTCATTCACAGTC-AAGATCAGACCAGACCGAGGGTTGTGAAAGCACATGCTTGG
1 GCATACGGAGTTCATTC-TAGTCTAAGATC-G--GTGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19420218 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTTGGAGA
62 CTCGGACATGTGCTGGTGCCGCATTTTTCTT-GTC--GG---CA-CG-C-GAGCATCGTCGGAGA
* * * * *
19420283 ACCTGACCGGTGGCATAGGGGTTTCGGCGATCGGGGGGGCCGGGTGGGTGTGTGCACATGATGTG
118 ACCTGACCGGCGGCATTGGTGTTCCGGCGATC-GGGGGGCCGGG-GGGTGTGCGCACATGATGTG
* * *
19420348 CGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAT
181 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
19420413 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
245 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
19420478 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
310 GGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19420543 TGCATGCCAA-AAAAAGTACAGGGATCACGTCTACCAAGTTTTGGGCCAAAATTCCTTCCAAAAA
375 TGCATGCCAACAAAAACTACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * * *
19420607 AATTTTAAAAAATCTCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
440 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19420672 TGCCATGAAACTTCAC-TGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGAC
505 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19420736 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCAACCGCCTTATCGATCCACGGCTTGC
570 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGC
* * * *
19420801 GCATCCCGTCTCTCTGGACGACGTAGTGCCCGCCCGTCCGTCTGCCCGCTCTTTTTGTCGGTTGG
635 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTTGTCGGTTGG
* * *
19420866 CTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGGCTGAGGGTTGCGACAGCAGGAT
699 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-AGGCTGAGGGTTGCGACAGCAGGAT
* ** * *
19420931 CGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCCGCCCTTTTGGCCGGCTA
763 CGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCTTCTGGCCGGCTG
* * *
19420996 AGCGCCCGCATGCTTGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
828 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
19421056 GCATACGGAGTTCATTCCTAGTCTAAGATCGGTTTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATT-CTAGTCTAAGATCGG--T-GACCGAGGGTTGCGGCAGCACATGCTGGG
*
19421121 CTCGGACATGTGCTGGTGCCGCATTTTTC-T-TC-GC-CG-GAGCATTGTCGGAGAACCTGACCG
62 CTCGGACATGTGCTGGTGCCGCATTTTTCTTGTCGGCACGCGAGCATCGTCGGAGAACCTGACCG
* * * * * *
19421181 ACGGCATT-TTGGTTCCAGCGATCGGGGGGCCAGGGGGTGTGCGCGCATGATATGCGATGGGTGC
127 GCGGCATTGGT-GTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
19421245 TGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
191 TGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
19421310 AAAGCATTTGAGATTTTATAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
255 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* *
19421375 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTT-TGCATGCCA
320 TTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCA
* * * **
19421439 ACAGAAA-TACAAGGATCACGTCTAGC-AAGTTTCGGGCCAAAAATCCATCTGAAAAAATTTTAA
384 ACAAAAACTACAAGGATCACGTCTA-CAAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAA
* *** *
19421502 AAAATC-CTGAACGGCAAAAA-TTT-ATGAAAATTGGGAAAAATAGAAAACGAGTTGTCTTGCCA
448 AAAATCTC-GAACCGCAAAAAGTTTCA--AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
19421564 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
510 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
19421629 CACGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGCGGATC
575 CACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
19421694 CCGTCTCTCTGGCCGACATAGTGCTCGGCTGCTCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
640 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC-CGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
* * * ** * * *
19421759 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGTAGTAGGATCAGCA
704 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGG-CTGAGGGTTGCGACAGCAGGATCGGTA
* * * * * *
19421824 GCATGCAGAGGGGGACTCGACCGATCCCCGGCTTGCACATCTCGCCCTTTTGGCTGGCTGAGCGC
768 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCTTCTGGCCGGCTGAGCGC
* * * *
19421889 CCGCACGCTTGTTTTGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
833 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19421944 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTGCGACAGCACATGCTTGG
1 GCATACGGAGTTCATT-CTAGTCTAAGATCGG--TG-ACCGAGGGTTGCGGCAGCACATGCTGGG
19422009 CTCAGG-CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGTAGCATCGTCGTAG
62 CTC-GGACATGTGCTGGTGCCGCA----T-TT-------------T--TC-T----T-GTCG--G
* * *
19422073 CATCGTCGTAGCATCGTCGGAGAACCTGACCGGCGGCATTAGTGTTCCGGAGATCGGGGGGCTGG
98 CA-CG-CG-AGCATCGTCGGAGAACCTGACCGGCGGCATTGGTGTTCCGGCGATCGGGGGGCCGG
* *
19422138 GGGGTGTGCGCACATGATGTGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCT
160 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCT
* * *
19422203 TATGAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGT
224 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
19422267 AGCTATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGA
289 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGA
* * *
19422332 GTTTTTAGCTCAATTTTTTTGTGCATGCCAAC-AAAACTAGAAGGATCATGTCTACAAAGTTTGG
354 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAACTACAAGGATCACGTCTACAAAGTTTGG
* * * ** *
19422396 GGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCGAAAATCATGA
419 GGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGA
* *
19422461 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTTTATGAA
484 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
19422526 TTTGCAAGCC-TAAAAAATGGCATTGGCACACAGAAATATGAAGATGTG-CTAAACCCACCTACC
549 TTTACAAGCCAT-AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACC
* * *
19422589 ACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCGACGTAGTGCCCG--C-CCGCCCA
613 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCCG
** * *
19422651 CCCGCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGAC
678 CCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGC
* ** * *
19422716 TGAGGGTTCCGGTAGCAGGATCGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCACA
742 TGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCACA
* * * *
19422781 TCCCGTCCC-TCTGGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGATGACTTAGGCATACGGA
807 TCCCG-CCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
**
19422845 GTTGTTTCCCAGTCTAA
871 GTTCATTCCCAGTCTAA
* * * *
19422862 G-AT-C--AG---A-TC--G----A-A-C--T----GAGGGTTACAGTAGCACATGCTGTGCTC-
1 GCATACGGAGTTCATTCTAGTCTAAGATCGGTGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * **
19422904 GAGCATGTCCTGGTGCCGTATTTTTCTTTGTCGGGTCACCATCGCCTGAGCATCACCGGAGAACC
66 GA-CATGTGCTGGTGCCGCATTTTTC-TTGTC-GG----CA-CG-C-GAGCATCGTCGGAGAACC
* * * *
19422969 TAACCGGCGGCATTGGTGTTTCGGTGATCGAGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGA
121 TGACCGGCGGCATTGGTGTTCCGGCGATCG-GGGGGC-CGGGGGGTGTGCGCACATGATGTGCGA
* * *
19423034 TGGGTGCTGGTACTTGGCCTTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCGCACC
184 TGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19423099 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGG
248 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* *
19423164 GACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGGATTTTTTTTTTG
313 GACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGTG
* ** *
19423229 CATGCCAACAAAAA-TACAAGGATCATGTCTACAAAGTTTGGGGGTAAAAATCCTTCCGAAAAAA
377 CATGCCAACAAAAACTACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
* * *
19423293 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTGGTCTTG
442 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19423358 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGGCAT
507 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
19423423 TGGCACATAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
572 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGC
* * *
19423488 ATCCCGTCTCCCTGGCCGGCGTAGTGCCCG-CCGACCGCCCG-CCGCTTGTTTTGTCGGTTGGCT
637 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTTGTCGGTTGGCT
* *
19423551 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-----------A-CG
701 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGG-CTGAGGGTTGCGACAGCAGGATCG
** * * * * * * * *
19423604 GT-------AGAGGGACACCTGGTCGATCCCCAGCTTACGCATCCTGCCCCTCTGGCCGACTGAG
765 GTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCTTCTGGCCGGCTGAG
* *
19423662 CGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19423720 GCACACGGAGTTCATTCTCAGTCTAAGATCGG
1 GCATACGGAGTTCATTCT-AGTCTAAGATCGG
19423752 ACCGAACTAA
Statistics
Matches: 2339, Mismatches: 253, Indels: 233
0.83 0.09 0.08
Matches are distributed among these distances:
857 3 0.00
858 95 0.04
859 1 0.00
860 1 0.00
862 2 0.00
865 4 0.00
866 4 0.00
867 3 0.00
868 2 0.00
869 1 0.00
870 47 0.02
871 7 0.00
872 118 0.05
873 80 0.03
874 207 0.09
875 69 0.03
876 3 0.00
877 62 0.03
878 6 0.00
885 1 0.00
886 4 0.00
887 317 0.14
888 422 0.18
889 39 0.02
890 1 0.00
892 40 0.02
893 2 0.00
894 1 0.00
897 1 0.00
900 2 0.00
902 23 0.01
903 61 0.03
906 1 0.00
907 1 0.00
908 2 0.00
909 1 0.00
910 1 0.00
911 1 0.00
914 3 0.00
916 3 0.00
917 2 0.00
918 182 0.08
919 8 0.00
921 2 0.00
922 73 0.03
923 266 0.11
924 163 0.07
925 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GCATACGGAGTTCATTCTAGTCTAAGATCGGTGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
GACATGTGCTGGTGCCGCATTTTTCTTGTCGGCACGCGAGCATCGTCGGAGAACCTGACCGGCGG
CATTGGTGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
AATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
CTACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTC
GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
ATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGACGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACAGGCTGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGAGGGG
GACCCGGCCGATCCCCGGCTTGCACATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19421954 original size:26 final size:26
Alignment explanation
Indices: 19421918--19421970 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19421908 GTTGACTTAG
19421918 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19421944 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19421970 G
1 G
19421971 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19422067 original size:11 final size:11
Alignment explanation
Indices: 19422051--19422091 Score: 82
Period size: 11 Copynumber: 3.7 Consensus size: 11
19422041 GCCGGGGCAC
19422051 CATCGTCGTAG
1 CATCGTCGTAG
19422062 CATCGTCGTAG
1 CATCGTCGTAG
19422073 CATCGTCGTAG
1 CATCGTCGTAG
19422084 CATCGTCG
1 CATCGTCG
19422092 GAGAACCTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.17, C:0.29, G:0.27, T:0.27
Consensus pattern (11 bp):
CATCGTCGTAG
Found at i:19423909 original size:26 final size:26
Alignment explanation
Indices: 19423879--19423931 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19423869 GTTGACTTAG
19423879 GCATACGAAGTTCATTCGC-AGTCTAA
1 GCATACGAAGTTCATTC-CTAGTCTAA
19423905 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
19423931 G
1 G
19423932 ATTGAATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:19426549 original size:26 final size:26
Alignment explanation
Indices: 19426519--19426569 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19426509 GTTGACCTAG
19426519 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
19426545 GCATACGGAGTTCATTCCCATTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
19426570 GGATCGAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19427458 original size:26 final size:26
Alignment explanation
Indices: 19427422--19427474 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19427412 GTTGACGTAG
19427422 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
* *
19427448 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
19427474 G
1 G
19427475 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:19427993 original size:907 final size:899
Alignment explanation
Indices: 19425644--19430118 Score: 5541
Period size: 907 Copynumber: 5.0 Consensus size: 899
19425634 GTTGACTTAG
* * * *
19425644 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCC-ATCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
19425709 CTCGAGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGTCGGAG
64 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTC-ACCGGGCACCATCGCT-GGAGCATCGTCGGAG
** * *
19425773 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGACTGGGGGGGATGTGCGCACATGACG
127 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGG-CCGGGGGGG-TGTGCGCACATGATG
*
19425838 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
19425903 ACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19425968 ATGGGGACACTTTTTTCAAATAGTCACAGAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
19426033 TGTACATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCGAAAACTCTTTCTGAAA
385 TGTGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTC-GAAA
* *
19426098 AAATTTTAAAAAAT-CT-AGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATGGAAAATGAGTCG
449 AAATTTTAAAAAATCCTGA-AACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCG
*
19426161 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
19426226 GGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCT
578 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * **
19426291 TGCACATCCCGTCTCTCTAGCCGACGTAGTGACTGCCCG--C-CC-GCCCGCTCGTTTCATCAAT
643 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCAGCCCGCTCATTTCGTCGGT
* * **
19426352 TGGCTTAGGCATACGGAGTTAATTCTCCA-TCTAAGATCAAATGGGACCGAGGGTTGCCA-CAGC
708 TGGCTTAGGCATACGGAGTTCATTC-CCAGTCTAAGATCGAA-CAGACCGAGGGTTG-CAGCAGC
* * * * * * * *
19426415 AGGATTGGCCGCATGCAGAGGGGGACCTGATCGATCCCTGGCTTGAGCATCCAGCCCTTCTGGCC
770 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
19426480 GACT-AAGCGCTCGCATGCTCAG-TTCGTGGGTTGACCTAGGCATACAGAGTTCATTCCCAGTCT
835 GGCTGAA-CGCCCGCACGCTC-GTTTCGTGGGTTGACGTAGGCATACAGAGTTCATTCCCAGTCT
19426543 AA
898 AA
* *
19426545 GCATACGGAGTTCATTCCCATTCTAGGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTAGA
1 GCATACGGAGTTCATTCCCA-TCTAAGATCG-ACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * * *
19426610 CTCGGGCATGTGCTGGTGCTGCA-TTTTCTTCGCCAGGGCGCCATCGCAT-GAGCA-CAGCCGGA
64 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCACC-GGGCACCATCGC-TGGAGCATC-GTCGGA
* * *
19426672 GAACTTGACCGGCGGCATTGGGCTTCCGATGATCGGGGGG--GTCGGGGGTGTGCGCACATGATG
126 GAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATG
* * *
19426735 TGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCCAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * **
19426800 ACACCCCCTTTAAGAGCATTTGAGATTTTACAGATTTACTGCCAGTAGTAATTAAAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19426865 ATGGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTT
320 AT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
19426930 TTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCTAGTTTGGGGCCAAAAATCCTTTCGAA
384 TTGTGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC-TTCGAA
* * * * *
19426995 AAAATTTTAAAAAAT-CTCAAACCGCAAAAAGTTTCAAAAATCGTGAAGAATAAAAAATGAGTCA
448 AAAATTTTAAAAAATCCTGAAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCG
* * * *
19427059 TCTTGCCATGAAACTTCACGGGAAGGATTAAGGGAACATTGTATGAATTTTCAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
19427124 GGCATTGGCACGTAGAAATATGAAGATGTGCTTGAACCCACCTAGCACCCTATCGATCCACGGCT
578 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * *
19427189 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGTCCGTAAGCTCGCTCGTTTCGTCGGT
643 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCAGCCCGCTCATTTCGTCGGT
* *
19427254 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCCGATCAGACCGAGGGTTGCAGCAGTA
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-T-CGAACAGACCGAGGGTTGCAGCAGCA
* * * *
19427319 GGATCGACAGCACACAGAAGGGGACCCGACCGAT-CCTCGGCTTGCGCATCCCGCCCCTCTGGTC
771 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
19427383 GGTTGAACGCCTGCACGCTCGTTTCGCGGGTTGACGTAGGCATACAGAGTTCATTCCTAGTCTAA
835 GGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACGTAGGCATACAGAGTTCATTCCCAGTCTAA
* * ** * *
19427448 GCATACGGAGTTCATTCCTAGTTTAAGATCAGACTGGATCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCA-TCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * *
19427513 CTTGGGCATGTGTTGGTGCCAAATTTTTCTTCACCGGGCACCATCGCTGGAGCATCGCCGGAGAA
64 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCACCGGGCACCATCGCTGGAGCATCGTCGGAGAA
* * * * *
19427578 GCTGACCGACGGCATTGGGGTTCCGGTGATCGGAGGGGCCAGGTGGGGTGTGCGCACATGATGTA
129 CCTGACCGGCGGCATTGGGGTTCCGATGATCGG-GGGGCC-GGGGGGGTGTGCGCACATGATGTG
* * * * * *
19427643 CGGTGGGTGCCTTGTACTTGGCCGTTATATTGGCCCCCTATCCCTCACCAAACCTTAAGAAATCA
192 CGATGGGTG-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
19427708 AACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19427773 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
19427838 GTGCATTCCAACAAAAATAAAAGGATCACCTCTACCTAGTTTGGGGCCAAAAATCCTGTCGAAAA
386 GTGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCT-TCGAAAA
* * *
19427903 AA-TTTAAAAAATCCTGAAACCGTAAAATGTTTCGAAAAATCGTGAAAAATAAAAAACGAGTCGT
450 AATTTTAAAAAATCCTGAAACCGCAAAATGTTTC-AAAAATCGTGAAAAATAGAAAATGAGTCGT
*
19427967 CTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
19428032 GCATTGGCACGTAGAAATATGAAGATGTGCTTGAACCCACCTAGCACCCTATCGATCCACGGCTT
579 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
19428097 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCATTTCGTCGGTT
644 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCAGCCCGCTCATTTCGTCGGTT
19428162 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCG-ACTAGACCGAGGGTTGCAGCAGCAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGAAC-AGACCGAGGGTTGCAGCAGCAG
* * * *
19428226 GATTGGCAGCATGCAGAAGGGGACCTGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGG
772 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
19428291 TTGAATGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 CTGAACGCCCGCACGCTCGTTTCGTGGGTTGACGTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
19428354 ACATACGGAGTTCATTCCCAGTCTCAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCA-TCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * * * * *
19428419 CTCAGGCATGTGCCGGTGCTGCATTTTTCTTCGCTGGGGCACCATC-ATCGGAGCATCGTCGGAG
64 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCAC-CGGGCACCATCGCT-GGAGCATCGTCGGAG
* * * *
19428483 AACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCAACGGGGGGGTTTGCGCACATGAT
127 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGG-C--CGGGGGGGTGTGCGCACATGAT
* * * * * **
19428548 GAGCGATGGGTGCTAGTACTTGGCCCATATTTTGGCCCCCTATCGCTCATCAAACCTTGAGAACT
189 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
19428613 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCACTAAAGTGTCTGA
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
19428678 AATGGGGACACTTTTTTCAAATGGGCAAAAAATCTTGTACACTTCGATTTTTTAGCTGAATTGTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
19428743 TTGTGCATGCCAAAAAAAATATAAGGATCATGTCTACCAAGCTTAGGGCCAAAAATCCTTCCGAA
384 TTGTGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTT-CGAA
* * **
19428808 AAAATTTTAAAAAATCATG-AACCGCAAAAAT-TTTTAAAAATAATGAAAAATAGAAAATGAGTC
448 AAAATTTTAAAAAATCCTGAAACCGC-AAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTC
19428871 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
512 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19428936 TGGCATTGGCATGCA-AAATATGAAGATGTG-CTAAACCCACCAACCACCCTATCGATCCAACGG
577 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGG
*
19428999 CTTGCGCATCCTGTCTCTCTGGCGCGACGT-GTTTGCCCGCCCGTCCGCCCA-CCCGCTCATTTC
641 CTTGCGCATCCCGTCTCTCTGGC-CGACGTAG--TGCCCGCCCGTCCG-CCAGCCCGCTCATTTC
** * * * * **
19429062 GTCGGTTGGCTTAGGCATACAAAGTTCAATCCCAGTCTAAGATCAAACTGAACTGAGGGTTGTGG
702 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAG-ACCGAGGGTTGCAG
* * *
19429127 TACCAGGATCGGCAGCACGCAGAGGGGGA-CCGACCGATCCCTGGCTTACGCATCCCGCCCCAT-
766 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCC-TC
* *
19429190 TGGCCGGGCTGAGCG-CCGCACGCCTCGTTTCGTGGGTTGA-GTAGGCATACGGAGTTCATT--C
830 TGGCC-GGCTGAACGCCCGCACG-CTCGTTTCGTGGGTTGACGTAGGCATACAGAGTTCATTCCC
19429251 --TC--A
893 AGTCTAA
*
19429254 GC-TA---AG---------ATC----A--GACCA-ACCAAGGGTTGCGGCAAGCACATGCT-GGC
1 GCATACGGAGTTCATTCCCATCTAAGATCGACCAGACCGAGGGTTGCGGC-AGCACATGCTAGGC
** * * * * *
19429298 TCGACCATGTGCTGGTG--GCA-TTTTCTTGA-CGGG-GCCATCCAGC-GAAGCATCATC-GAGA
65 TCGGGCATGTGCTGGTGCCGAATTTTTCTTCACCGGGCACCAT-C-GCTGGAGCATCGTCGGAGA
* *
19429356 ACCTGACCGGCGGCATT--GGTTCC-ATCGATC-GGGGTCC--CGGGGTGTGCG-ACA--ATGTG
128 ACCTGACCGGCGGCATTGGGGTTCCGAT-GATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
19429412 CGATAGGGTGCTGGTACGTTGGCCCTTATATTGG--CCCTATCCCT-ATC-AACCTCAAGAACTC
192 CGAT-GGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * * * *
19429473 TCACCACATTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTTTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19429538 ATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
19429603 TGTACATGCCATAAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAA
385 TGTGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTT-CGAAA
* * * * *
19429668 AAATTTTAACAAATCCCG-AACCGTAAAAAT-TTTCAAAAATCATGAAAAATAGAAAACGAGTCG
449 AAATTTTAAAAAATCCTGAAACCG-CAAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCG
*
19429731 TCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19429796 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACGCACCAACCACCCTATCGATCCACGACT
578 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
19429861 TGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCTGACCGTCCGCCCGCCCGCTCATTTCGTTGGT
643 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCAGCCCGCTCATTTCGTCGGT
* *
19429926 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGC-GATAGCA
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAG-ACCGAGGGTTGCAG-CAGCA
* * * * *
19429990 GGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTTGGCTT-CGCATCTCGCCCCTTTGGTCG
771 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * * *
19430054 GCTGAGCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACGTAGGCATACAGAGTTCATTCCCAGTCTAA
19430118 G
1 G
19430119 ATTGAACCGA
Statistics
Matches: 3153, Mismatches: 345, Indels: 189
0.86 0.09 0.05
Matches are distributed among these distances:
857 27 0.01
858 147 0.05
859 343 0.11
860 45 0.01
861 44 0.01
862 13 0.00
863 17 0.01
864 11 0.00
866 1 0.00
868 1 0.00
869 5 0.00
870 10 0.00
872 24 0.01
873 13 0.00
875 7 0.00
876 3 0.00
878 30 0.01
879 14 0.00
882 1 0.00
886 2 0.00
887 1 0.00
896 2 0.00
897 138 0.04
898 327 0.10
899 8 0.00
900 69 0.02
901 78 0.02
902 56 0.02
903 242 0.08
904 45 0.01
905 54 0.02
906 556 0.18
907 770 0.24
908 48 0.02
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCATCTAAGATCGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCT
CGGGCATGTGCTGGTGCCGAATTTTTCTTCACCGGGCACCATCGCTGGAGCATCGTCGGAGAACC
TGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCGAAAAAATTTT
AAAAAATCCTGAAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCAGCCCGCTCATTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGACCGAGGGTTGCAGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCC
CGCACGCTCGTTTCGTGGGTTGACGTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:19430190 original size:158 final size:158
Alignment explanation
Indices: 19429902--19430298 Score: 697
Period size: 158 Copynumber: 2.5 Consensus size: 158
19429892 CCTGACCGTC
*
19429902 CGCCCGCCCGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
1 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
19429967 CCGAACCGAGGGTTGCGATAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTTGGCT
66 CCGAACCGAGGGTTGCGATAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTTGGCT
*
19430032 TCGCATCTCGCCCCTTTGGTCGGCTGAG
131 TCGCATCTCGCCCCTTTGGCCGGCTGAG
*
19430060 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAA
1 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
19430125 CCGAACCGAGGGTTGCGATAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTTGGCT
66 CCGAACCGAGGGTTGCGATAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTTGGCT
19430190 TCGCATCTCGCCCCTTTGGCCGGCTGAG
131 TCGCATCTCGCCCCTTTGGCCGGCTGAG
* * * *
19430218 CGCCCGCACGCTCATTTCGTGGGTTAAG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
1 CGCCCGCCCGCTCATTTCGTCGGTT-GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* *
19430282 ACCGGACCAAGGGTTGC
65 ACCGAACCGAGGGTTGC
19430299 AGCAGCACAT
Statistics
Matches: 228, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
158 227 1.00
159 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
CCGAACCGAGGGTTGCGATAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTTGGCT
TCGCATCTCGCCCCTTTGGCCGGCTGAG
Found at i:19431761 original size:875 final size:875
Alignment explanation
Indices: 19430060--19433778 Score: 4127
Period size: 931 Copynumber: 4.2 Consensus size: 875
19430050 GTCGGCTGAG
**
19430060 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAA
1 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
** * *
19430125 CCGAACCGAGGGTTGCGATAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTTGGCT
66 CCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCT
* * *
19430190 TCGCATCTCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAAGTTAGGCATA
131 TCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* * * * *
19430255 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGG
196 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGA
* * * * * *
19430320 GCATGTGCTGGTGCCGCATTTCTCTTCGCTGGGGCACCATC-ATCGGAGCATCGTCGGAGAACCT
261 GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCTCGGAGCATCATCGGAGAACCT
* * * * * * *
19430384 GATC-AGCGACATTGGGGTTTCGACGATCGGGGAGGCCGAGGGGGTGTCCGCACATGATTTGCGA
326 GACCGA-CGACATTAGGGTTCCGGCGATCGGGG-GGCCG-GGGGGTGTGCACACATGATGTGCGA
*
19430448 TGGGTGCTGGTATTTGGCCCTTATATTGG-CCCCTATCCCTCATC-AAACTTGAGGAACTCACAC
388 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTTGA-GAACTCACAC
* *
19430511 TCCCTTAAAAGAGCCATTTGA-ATTTTACAGG-TTGCTGCCAGTTAGCCATTAAAAGTGGTCTTA
452 CCCCTT-AAAGAG-CATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATT-AAAGT-GTCTGA
19430574 AATGGGGACA-TTTTTTCAAAATGGTCACAAAATCCTTGTACACTTCGA-TTTTTAGCTGAA-TT
512 AATGGGGACACTTTTTTC-AAATGGTCACAAAAT-CTTGTACACTTCGAGTTTTTAGCTGAAGTT
* * * * *
19430636 GTTTTGGTGCATG-CAAAAAAAATACAAGGATCATGTCTACCAAAGCTTAGGGCCAAAAATCCTT
575 -TTTT-ATGCATGCCAAAAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTT
* * * *
19430700 CTGAAAAAATTTTAAAAAATCATGAACCGCAAAAATTTTTG-AAAATAATGAAAAATAGAAAACG
637 CCGAAAAAATTTTAAAAAATCACGAACCGCAAAAA-GTTTGAAAAATCATGAAAAATAGAAAACG
19430764 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
701 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATA
* *
19430829 AAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATC
765 AAAATGGAATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
** *
19430892 CACGGCTTGCGCATCCTGTCTCTCTGGCCGACGT-GTTGCCCGCCCGTC
828 CACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAG-TGCCCGCCCGCC
* ** *
19430940 CGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACAAAGTTCAATCCCAGTCTAAGATCAAA
1 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
* * * * *
19431005 CTGAACTGAGGGTTGTGGTACCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCT
66 CCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCT
* * * *
19431070 TACGCATCCCTCCCCATTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAGTTAGGCAT
131 T-CGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
** * *
19431135 ACGGAGTTCATTCTTAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCACATGCTATGCTCG
195 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTAGGCTCG
* * * *
19431200 AGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCT-GGAGCATCACCGAAGAACC
260 AGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCTCGGAGCATCATCGGAGAACC
* * * *
19431264 TGACCGACGGCATTAGGGTTCCGGCGATCGGGGGACCGGGGGGTGTGCACACA-AATGTGCGATA
325 TGACCGACGACATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATG
*
19431328 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTTGAGAAGTCACACCCC
390 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTTGAGAACTCACACCCC
19431393 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
455 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
19431458 CACTTTTTTCAAATGGTTACGAAATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTATGCAT
520 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTATGCAT
*
19431523 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTT
585 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
19431588 AAAAAATCACAAACGGCAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCAT
650 AAAAAATCACGAACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
19431653 GAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGC
715 GAAACTTCACGTGAAGGCTT-AAGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGC
*
19431718 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCC
779 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
19431783 CGTCTCTCTGGCCGACGTAGTGCCCGCCTGCC
844 CATCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * ***
19431815 TGCCCGCCCACTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGA
1 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
* ** * * * * *
19431880 CCGGATTGAGGGTTCCGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCT
66 CCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGC-
* * * * *
19431945 TTCACATCCCCGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACATAGGCA
130 TTCGCAT-CCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * * ** *
19432010 TACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA-GCATACAGAGTTCAT
194 TACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CCAGACCAAGGGTTGC-G-G--CA-
* * * * * ** **
19432074 TCCCA-GTCTAAGATTGGAC-CAGACCGACG-GTTGCAGCAGCACATGTTGGGC-TCAGGCATGT
244 GCACATG-CT---A--GG-CTC-GAGC-ATGTGCTGGTGC--CACAT-TT-TTCTTCA--C----
* * * *
19432135 GCTGGTGC-CGCATTTCTCTTCTCCGAGGCACCATCGCCAGAGCATCGCCGAAGAACCTGACCGG
290 -C-GGGGCAC-CA----TC-GCT-C--GG-AGCAT--------CATCG--G-AGAACCTGACCGA
* * * * * * *
19432199 CGACATTGGGGTTTCGACGATTGGGGGGGTCGGGGGG-GTGTCTGCACATGATGTGTGATGGGTG
332 CGACATTAGGGTTCCGGCGA-TCGGGGGGCCGGGGGGTGTG-C-ACACATGATGTGCGATGGGTG
* * * * *
19432263 CTGGTATTTGGCCCCTATATTGGCCCCCTCTCCCTCATCAAACCTTGAGAACTCACACCCTCTTA
394 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTTGAGAACTCACACCCCCTTA
*
19432328 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
459 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * * * *
19432393 TCTTTAAAATGGCCACAAAATCTTGTACACCTCGAGTTTTTAGTTGAAGTTTCTTGTGCATGCCA
524 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTATGCATGCCA
* * *
19432458 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAAA
589 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * * * * *
19432523 AGTCTCGAGCCGCAGAAAGTTCT-AAAAATCATAAAAAATAGAAAATGAGTTGTCTTCCCATGAA
654 AATCACGAACCGCAAAAAGTT-TGAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
19432587 ACTTCACGTGAAGGCTTAAGTGACCACTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCA-A
718 ACTTCACGTGAAGGCTTAAG-GACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACA
* * * *
19432651 GTAGAAATATGAAGATGTTCCAAAACCCACCTACCACCCTATTGATCCACGGCTTACGCATCCCA
782 -TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
* * *
19432716 TCTCTCTAGCTGATGTAGTGCCCGCCCGCC
846 TCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * * * * *
19432746 CGCCCGCTCACTCGTTACGTTGGTTGGCTCAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
* * * * * * *
19432811 TCGAACCAAGGGTTGCGGCATCAGGATCGGTAGCATGCAGAGGGGGACTCGATCGATCCCTGGCT
66 CCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCT
* * *
19432876 TGCCCATCCCGCCCCTTTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 T-CGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* ** * * * * *
19432941 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAAATGCTGGGCTCG
195 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTAGGCTCG
* * ** *
19433006 GGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGTGCCATCG-TCGGAGCATCATCGGAGAACT
260 AGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCTCGGAGCATCATCGGAGAACC
* * * * * * *
19433070 TGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCAAGGTGGTGTGCACACATGATGTACGA
325 TGACCGACGACATTAGGGTTCCGGCGATC-GGGGGGCC-GGGGGGTGTGCACACATGATGTGCGA
* * *
19433135 TGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
388 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTTGAGAACTCACACC
* **
19433200 CCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAA
453 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19433265 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAGTTTTTTATGC
518 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTATGC
*
19433330 ATGCCAACAAAAATACAAGGATCACGTCTTACCAAGGTTTGGGGCCAAAAACTCCTTCCG-AAAA
583 ATGCCAAAAAAAATACAAGGATCACGTC-TACCAA-GTTTGGGGCC-AAAACTCCTTCCGAAAAA
* *
19433394 ATTTTAAAAAA-CATCGAACCACAAAAAGTTTCAAAAATCATG-AAAATAG-AAACGAGTCGTCT
645 ATTTTAAAAAATCA-CGAACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
19433456 TGCCAAGGAACTTCACGTGAAGGCTTAAGGATCGTTGTATGAATTTACAAAGCCCATAAAAATGG
709 TGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTAC-AAG-CCATAAAAATGG
*** *
19433521 AATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATCCACGGCTTG
772 AATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * *
19433586 CGCATCCCATCTCTCTGGTTGGCATAGTGCCCGTCTGCC
837 CGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * *
19433625 CGCCCAGGCTGCCTCGTGTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC
1 CGCCC-GCCCG-CTCAT-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * * * * * *
19433690 AGACCGGAA-CAAGGGTTGCGTTAGTAGGATCGACAGCACGCA-ACGAGAGACCAGGCCGATCCC
63 AAACC-GAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGGGGACCCGACCGATCCC
* * *
19433753 CGGCTTGCGCATCCAGCCCCTCTGGC
126 TGGCTT-CGCATCCCGCCCCTTTGGC
19433779 TGATGTCATT
Statistics
Matches: 2401, Mismatches: 332, Indels: 210
0.82 0.11 0.07
Matches are distributed among these distances:
873 2 0.00
874 5 0.00
875 360 0.15
876 146 0.06
877 40 0.02
878 353 0.15
879 177 0.07
880 181 0.08
881 217 0.09
882 109 0.05
883 4 0.00
885 2 0.00
886 8 0.00
887 1 0.00
889 7 0.00
890 7 0.00
892 1 0.00
893 2 0.00
895 4 0.00
896 8 0.00
897 2 0.00
898 4 0.00
899 10 0.00
900 3 0.00
901 1 0.00
905 1 0.00
906 3 0.00
907 10 0.00
908 5 0.00
909 2 0.00
910 8 0.00
911 5 0.00
912 2 0.00
916 6 0.00
917 6 0.00
919 1 0.00
920 5 0.00
921 4 0.00
923 1 0.00
925 4 0.00
926 1 0.00
928 32 0.01
929 16 0.01
930 84 0.03
931 550 0.23
932 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
CCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCT
TCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGA
GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCTCGGAGCATCATCGGAGAACCT
GACCGACGACATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTTGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTATGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCACGAACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCAC
ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
TCTCTCTGGCCGACGTAGTGCCCGCCCGCC
Found at i:19432043 original size:26 final size:26
Alignment explanation
Indices: 19432007--19432085 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
19431997 GTTGACATAG
19432007 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19432033 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19432059 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19432085 G
1 G
19432086 ATTGGACCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19434540 original size:25 final size:25
Alignment explanation
Indices: 19434506--19434557 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
19434496 TGACATAGGC
* *
19434506 ATACGGAGTTCATTCCCTGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
19434531 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
19434556 AT
1 AT
19434558 CAGACCAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (25 bp):
ATACGAAGTTCATTCCCAGTCTAAG
Found at i:19436099 original size:26 final size:26
Alignment explanation
Indices: 19436069--19436121 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19436059 GTTGACTTAG
19436069 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19436095 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19436121 G
1 G
19436122 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19436604 original size:896 final size:873
Alignment explanation
Indices: 19434728--19438630 Score: 4922
Period size: 896 Copynumber: 4.5 Consensus size: 873
19434718 GCAACCTAAT
* * * * * *
19434728 AGGATCAC-TCTATCCTAGTTTTGGGCCAGAACTCATTCCGAAAAAATTTTAAAAAATCCCAAAC
1 AGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAC
*
19434792 CGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
65 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * **
19434857 AGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGA
130 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* *
19434922 AGATGTGCCTAAACCCACCTTCCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCG
195 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
** * * * *
19434987 GTGTAGTGCCCTCCAGCCCACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
260 ACGTAGTG--C-CC-G----CCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
* * ** * * * ** *
19435052 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTTGTAGCAAGATCGGTAGCATGCAGAGGGGGA
317 TCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGTAGGATCGACAGCACGCAGAGGGGGA
** ** * * * *
19435117 CCCGACCGATCCTTGGCTTTTGCAT-CCAGCTCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTT
382 CCCGACCGATCCCCGGCTTACGCATCCCA-CCCCTCTGGTCGGCTGA--GCCCGCACGCTTGTTT
* * *
19435181 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-GA-A-TC-GAACGAGGGTT
444 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACACACGGACCGAGGGTT
* * ** * * * *
19435242 GCGGCAGCACTTGCTGGGCTCGGGCTTGTGCTGGTGCTGCATCTTTCTTCGTCGGGGCACCAGCG
509 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCTAGGGGCACCATCG
* * * * * * *
19435307 CCGAAGCATCGTCAGAGAACCTGACCGACAGCATTGGGGTTTCGACGATCGGGGGGGCTGGGGGT
574 CCGGAGCATCCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCT--CGG-
*
19435372 GGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
636 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
19435437 TCATC-AAGCTCTGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
701 TCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
19435501 GTAGCCATTAAAGTGTC-TGAAATGGGAACACTTTTTTCAAATGGGCA-AAATATCTTGTACACT
765 GTAGCCATTAAAGTGTCTTGAAATGGGAACACTTTTTTCAAATGGTCACAAA-ATCTTGTACACT
* *
19435564 TTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCATA-AAAAATACA
829 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACA
* ** * *
19435609 AGGATCACATCTACCAAGTTTGGTTCCAAAACCCCTTCCAAAAAAATTTTAAAAAATC-CTGAAC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAAC
* * *
19435673 CGTATAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
65 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
19435738 AGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCACATAGAAATATGA
130 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * *
19435803 AGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTAGCCG
195 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
19435868 ACGTGGTGCCCGCCCGCTCGCTCGTTTCGTCCGTTGGGTTAGGCATACGGAGTTCATTCCCAGTC
260 ACGTAGTGCCCGCCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** ** * * * *
19435933 TAAGATTGGACTGGACCGAGGGTTGCAGCAGTAGGATTGACAGCACGTAGAGGGGGACCCGATCG
325 TAAGATCAGACCAGACCAAGGGTTGCAGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCG
* * * * * * *
19435998 ATCCCCGGCTTACACATCCCGCCCCTTTGGTCGGCTGAGCACACGTATGCTCGTTTCATGGGTTG
390 ATCCCCGGCTTACGCATCCCACCCCTCTGGTCGGCTGAGC-C-CGCACGCTTGTTTCGTGGGTTG
19436063 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
453 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----CA--C----A-CGGA
* * * * *
19436128 TCGGATCGAGGGTTGTGGTAGCACATGCTGGGCT-GGATCATGTGCTAGTGACACATTTTTCTTC
500 -C----CGAGGGTTGCGGCAGCACATGCTGGGCTCGG-GCATGTGCTGGTGCCACATTTTTCTT-
* * * *
19436192 CCT-GGGGCACCATCGCCGGAGCATCACT-GGAGAACCTGATCGGCGGCATTAGGGTTCCGGCGA
558 CCTAGGGGCACCATCGCCGGAGCATC-CTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
*
19436255 TC-GGGGGGCT-GAGGGGGGCTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTAT
622 TCAGGGGGGCTCG-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * * *
19436318 ATTAGCCTCCTATCCCTCATTAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTT
685 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
19436383 TCAGGTTTGCCGCCAGTAGCCACTAAAGTGTCTTG-AATGGG-ACACTTTTTTCAAATGGTCACA
750 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAAATGGGAACACTTTTTTCAAATGGTCACA
*
19436446 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACA
815 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
19436505 AGGATCATGTCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACA
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
* * * *
19436570 GCAAAAAGTTTCAAAAATCATGAGAAAGAGAAAACGAGTCGTCTTCCCATGAAACTTCACGTGAA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * **
19436635 GGCTTAAGGAACCATTGTATGACTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
* * *
19436700 GATGTGCCTAAACCGACCTACCACCATATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGA
196 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* *
19436765 CGTAGTGCCCGCTCG-TCGGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTC
261 CGTAGTGCCCGCCCGCTC-GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
19436829 TAAGATCAGACCAGACCAAGGGTTACAGTAGTAGGATCGACAGCACGCAGAGTGGGACCCGGCCG
325 TAAGATCAGACCAGACCAAGGGTTGCAGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCG
* * * * *
19436894 ATACCTCGGCTTACGTATCCCACCCCTCTGGCCGGCAGAGCGCCCGCACACTTGTTTCGTGGGTT
390 AT-CCCCGGCTTACGCATCCCACCCCTCTGGTCGGCTGA--GCCCGCACGCTTGTTTCGTGGGTT
* *
19436959 GACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGAC-CA--GACCGAGGGTTACGGCAGC
452 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACACACGGACCGAGGGTTGCGGCAGC
* ** * *
19437021 ACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTCCTTCACT-GGGGCACCATCGCTGGAGC
517 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-CTAGGGGCACCATCGCCGGAGC
* *
19437085 ATCAC-CGGAGAACCTGACCGACGGCATTGGGGTTTCGATGATCA-GGGGGCTCGGGGGGGTGTG
581 ATC-CTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCTCGGGGGGGTGTG
** *
19437148 CGCACATGATGTGCGATGGGTGCTGGTACTTGAACCTTATATTGGCCTCCTATCCCTCATCAAAC
645 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
19437213 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
710 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
19437278 AAGTGT-TTGAAATGGGAATACTTTTTTCCAATGGTCACAAAATCTTGTACACTTAGAGGTTTTA
775 AAGTGTCTTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
*
19437342 GCTGAATTCTTTTGTGCATGCCAACAAAAATACA
840 GCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * ** * * * *
19437376 AGGATCACGTGTACCAAGTTTAGGGTGAAAAATCTTTTCGAAAAAATTTTAAAAAATCCCGAACC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
* * **
19437441 G-AAAAAATTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
19437505 GGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
19437570 -AGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
196 GA-TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *** * *
19437634 ACATAGT-TTGGCCCGCTCG-T--TTT-GTCAGTTGGCTTAGGCATACGGATTTCATTCCTAGTC
260 ACGTAGTGCCCGCCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * ** * *
19437694 TAAGATCGGACCGGGCCAAGGGTTG-AGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGGCC
325 TAAGATCAGACCAGACCAAGGGTTGCA-GCAGTAGGATCGACAGCACGCAGAGGGGGACCCGACC
** *
19437758 GATCCCCGGCTTGTGCATCCCACCCCTCTGGTCGCCTAAGAGCCCGCACGCTTGTTTCGTGGGTT
389 GATCCCCGGCTTACGCATCCCACCCCTCTGGTCGGCT--GAGCCCGCACGCTTGTTTCGTGGGTT
** * *
19437823 GACTTAGGCATACAAAGTTCATTCCCAATCTAAGATCAG--AC-CGGACCGAGGGTTGCGGTAGC
452 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACACACGGACCGAGGGTTGCGGCAGC
* * *
19437885 ACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTAGGGGCACCATCACCGGAGCA
517 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCTAGGGGCACCATCGCCGGAGCA
*
19437950 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGC-C--GGGGG-GTGCG
582 TCCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCTCGGGGGGGTGTGCG
* *
19438011 TACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
647 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
19438076 CGAGAACCCACTCCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
712 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
19438141 GTGTC-TGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGGACACTTCGAGTTTTTAGC
777 GTGTCTTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
19438205 TAAATTTGTTTGTGCATGCCAACAAAAATACA
842 TGAATTTTTTTGTGCATGCCAACAAAAATACA
19438237 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
* * *
19438302 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCTTGGAACTTCACGTGAA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * ***
19438367 GGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCATGTAGAAAATATGA
131 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG-AAATATGA
* * * * *
19438432 AGATGTCCCTAAACCCAACTACCACCCTATCGATCCATGGCTTGCGCATCCCGGCTCTCTGGCTG
195 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * *
19438497 GCGTAGTGCCCGCCCGCCCGCTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
260 ACGTAGTGCCCGCCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * * * * *
19438562 TAAGATCAGACCAGACTGAGGGTTGC-GATAGTAGGATTGATAGCACGCAGAAGGGGACCCGATC
325 TAAGATCAGACCAGACCAAGGGTTGCAG-CAGTAGGATCGACAGCACGCAGAGGGGGACCCGACC
19438626 GATCC
389 GATCC
19438631 TCGATTTACA
Statistics
Matches: 2621, Mismatches: 326, Indels: 163
0.84 0.10 0.05
Matches are distributed among these distances:
861 270 0.10
862 111 0.04
863 73 0.03
864 207 0.08
865 96 0.04
866 5 0.00
867 3 0.00
868 88 0.03
869 9 0.00
870 320 0.12
871 246 0.09
872 3 0.00
873 175 0.07
874 4 0.00
875 2 0.00
876 2 0.00
877 1 0.00
878 3 0.00
879 2 0.00
880 1 0.00
881 234 0.09
882 4 0.00
883 1 0.00
886 2 0.00
890 1 0.00
893 2 0.00
894 1 0.00
895 6 0.00
896 420 0.16
897 213 0.08
898 7 0.00
899 12 0.00
900 94 0.04
901 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (873 bp):
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGTGCCCGCCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAGACCAAGGGTTGCAGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGA
TCCCCGGCTTACGCATCCCACCCCTCTGGTCGGCTGAGCCCGCACGCTTGTTTCGTGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACACACGGACCGAGGGTTGCGGCAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCTAGGGGCACCATCGCCGGAGCATCCT
CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCTCGGGGGGGTGTGCGCACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACA
Found at i:19438798 original size:26 final size:26
Alignment explanation
Indices: 19438761--19438813 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19438751 TACTTGGCCC
19438761 GCATACGAAGTTCATGCCCAGTCTAA
1 GCATACGAAGTTCATGCCCAGTCTAA
*
19438787 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATGCCCAGTCTAA
19438813 G
1 G
19438814 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATGCCCAGTCTAA
Found at i:19440274 original size:29 final size:29
Alignment explanation
Indices: 19440229--19440287 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
19440219 TAGTGCCCGC
*
19440229 ATTTATCTTCGTCGGGGAACCATCATCGG
1 ATTTATCTTCATCGGGGAACCATCATCGG
* * *
19440258 ATTTATCTTCATTGGGGCACCATCGTCGG
1 ATTTATCTTCATCGGGGAACCATCATCGG
19440287 A
1 A
19440288 GCATCAACCG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (29 bp):
ATTTATCTTCATCGGGGAACCATCATCGG
Found at i:19441027 original size:26 final size:26
Alignment explanation
Indices: 19440991--19441043 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19440981 CACGGCTTAG
* *
19440991 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19441017 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19441043 G
1 G
19441044 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19441921 original size:26 final size:26
Alignment explanation
Indices: 19441885--19441937 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19441875 GTTGACTTAG
*
19441885 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19441911 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19441937 G
1 G
19441938 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19447089 original size:26 final size:26
Alignment explanation
Indices: 19447059--19447111 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19447049 GTTGACTTAG
* *
19447059 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
19447085 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19447111 G
1 G
19447112 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19448824 original size:26 final size:26
Alignment explanation
Indices: 19448795--19448850 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19448785 TGGGTTGACT
**
19448795 TAAGCATTTGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19448821 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19448847 TAAG
1 TAAG
19448851 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19449728 original size:26 final size:26
Alignment explanation
Indices: 19449692--19449744 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19449682 GTTGACTTAG
*
19449692 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCAATCCCAGTCTAA
*
19449718 GCATATGGAGTTCAATCTCAGTCTAA
1 GCATATGGAGTTCAATCCCAGTCTAA
19449744 G
1 G
19449745 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCAATCCCAGTCTAA
Found at i:19450224 original size:904 final size:900
Alignment explanation
Indices: 19447515--19471433 Score: 13193
Period size: 902 Copynumber: 26.3 Consensus size: 900
19447505 GCCAAAACCC
* *
19447515 TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
19447580 GGACCATTGTATGTATTTACAAGCCATAAAAATGGCATTGGCACGCATAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * *
19447645 TAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTGGCGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * *
19447710 CCGCCCGCCCGCCCGCCTGCTTGTTTCGTCGGTTGGCTTAGGCCTACGGAGGTCATTCCCAGTCT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * * *
19447775 AAGAGCGGACCAGA-CTGAGGGTTGCAGCAGCAGGATCAGTAGGACGCAAAGGGGGACCTGGCCG
261 AAGATCGGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
* * * * * * *
19447839 ATCCTCGACTTACGCAT----CCCAC---CCGGCTCAGCGCCCACACGCTCGTTTCGTGGGTTGA
325 ATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* * * * *
19447897 CTTAGGCATGCAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTGCCAGTCTAAGATCAGAC
390 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
19447962 CGGACCGGGGGTTGCGACAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
455 CGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCGC
* * ** * * * * * *
19448027 CAGGGCACTATCACCAGAGCATCGTCGAAGAACCTGACTGGCGGCATTTGGGTTCCGACGATTGG
520 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCG
*
19448092 GGGGGCTGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC-TGGCCCTTATATTGGC
584 GGGGGC-CGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * * * * *
19448156 CCCTTATCCCTCACCAAACTTCAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTATAAGT
647 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
19448221 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTT
712 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
19448286 GTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACTAGGATCACATCTA
777 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
19448351 CCAAGTTTTGGGCCAAAA-TGCCTTCTGAAAGAATTTTAAAAAGTCTCGAACCGCAAAAAG
842 CCAAGTTTGGGGCCAAAACT-CCTTC-GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
*
19448411 TTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
**
19448476 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
19448541 TAAACCCACCTACCACCCTATCGATCGATGGCTTGCGCATCCCATCTCTCTGGCCG-CTGTAGT-
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC-GTAGTG
** *
19448604 -------GCCCGTTCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
195 CCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * **
19448662 TAAGATCGAACCGGATTGAGGGTTGTGGTAGCAGGATCGGTAGCACGTAGAGGGGGACCTGGTCG
260 TAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
* * * * * *
19448727 ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGACTAAGCGCCCGCATGCTTGTTTCGTGGGTTG
325 ATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* ** *
19448792 ACTTAAGCATTTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
389 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
** * * * * ** **
19448857 CCGGAATGAGGGTTACGAAAGCACATGCTAGGCTCGGGCATACGCTGGTGCCTCATTTTTCTTCG
454 CCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCG
* * * ** * *
19448922 TC-GGGCACCATCGTCGGAGCATCG-CTGGGGAACTTGACCGGTGG-AGTTGGGGTTCTGACCAT
519 CCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCA-TTGGGGTTCCGACGAT
*
19448984 CGGGGGGCCGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
582 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
19449049 CCCCTATCCCTCATC--A-----AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGT
647 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
19449107 TTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
712 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
** * *
19449172 GTACACTTAAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCCA
777 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * * *
19449237 CCAACTTTTGGGCCAAAAATCCTTCCGAAAAATTTTTACAAAATCTCAAACCGCAAAAAG
842 CCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* *
19449297 TTTCGAAAATCATGAAAAATAGAACACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
** *
19449362 GGACCATTGTATGAATTTACAAGCCATAAAAATCACATTGGCATGCAGAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
19449427 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
** * ** * **
19449492 CCACCCGCCCGGTCGCCTGCTCGTTTCGTTTGTTGGTTTAGGCATATAGAGTTCATTCCCAGTCT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * *
19449557 AAGATTGGACCAGATTGAGGGTTGCACCAGCAGGATCAGCAGCACGCAGTGGGGGACCCGACCGA
261 AAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * *
19449622 TCCCCGGCTTGAGCATCTCGCCCCTCTGGCCGGATGAGCGCCCGAACGCTCGTTTCGTGGGTTGA
326 TCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* * * * *
19449687 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAATCTCAGTCTAAGATTGGAC
390 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * *
19449752 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGCCATGTGCTGATGCAGCATTTTTCTTCGC
455 CGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCGC
* *
19449817 CGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
520 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
**
19449882 GGGGATTGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
585 GGGG-CCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
19449947 CCCTATCCCTCATCAAACCAT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
648 CCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
19450011 TTGCTCCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTT
712 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * * *
19450076 GTACACTTCGAGTTTTAAGCTGAATTTTTTTGTACATGCTAACAAAAATAC-AGGCATAATGTCC
777 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG-ATCACGTCT
*
19450140 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAGAAG
841 ACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
*
19450201 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
19450266 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* *
19450331 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGGA-GTAGT-
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGACGTAGTG
* *
19450394 ---TCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
195 CCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * *
19450456 TAAGATCAGACCCGATCGAGGGTTGTGGCAGCAAGATCGACAGCACACAGAGCGGGACCCGACTG
260 TAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
* * * * *
19450521 ATCTCTGGCTTGAGCATCCCACCCCTCT-GCCTGGCTGAGCGCCCGCACGCTCATTTCATGGGTT
325 ATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCC-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * * *
19450585 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCAAAGATTGG
388 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * *
19450650 ATCGGACCAAGGGTTGCGATAGCACATGGTGGGATCGGGCATGTGCTGGTGCCA-CATTTTTCTT
453 ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTG-CAGCATTTTTCTT
* * * *
19450714 -GATCGGGGCACCATCGTCAGAGTATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGA
517 CG-CCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
19450778 TCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTG
581 TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
19450843 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
645 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
19450908 GTTTGCTACTAGTAGCCGTTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATC
710 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
19450973 TTGTACACTTTGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
775 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
19451038 TACCAGGTTTGAGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAC
840 TACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAG
* *
19451100 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
19451165 GGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
*
19451230 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * *
19451295 CCACCCACCCGCCCGCCCGTTCCTTTCGTCGGTTGGCTAAGGCATACAGAGTTCATTCCCAGTCT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * * *
19451360 AAGATCAGACCGGACCGAGGGCTATGACAGTAGGATCGGCAGCACGCAGAGGGGGA-CCTAGCCG
261 AAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCG
* * * *
19451424 ATCCTCGGCTTGCGCATCCTGCCCTTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGATTG
325 ATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* *
19451489 ACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
389 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * *
19451554 -CTGACTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCA-CATTTTTCATC
454 CCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTG-CAGCATTTTTCTTC
19451617 GCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-AGCGGCATTGGGGTTCC-AGCGA
518 GCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGA-CGA
* * *
19451680 TCGGGTGGGCCGGGGGGTGTGCGCACATGATGTGTGAAGGGTGCTGGTACTTGGCCCTTATTTTG
581 TCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
19451745 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
645 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
19451810 GTTTGCTGCTAGTAGCCATTAAAGTTTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATC
710 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
19451875 TTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATAAAATGATCACATT
775 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
19451939 TACCAGGTTTGAGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
840 TACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* *
19452001 TTTCAAAAATCGTGAAAAAT-GAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
1 TTTCAAAAATCATGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
19452065 GGAACCACTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGC
65 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* *
19452130 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTG
130 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
** * * *
19452195 ----CCCGCCCGCTTGCCCG---G---C--CGATTGGCTTAGGCATACAGAGTTCATTCTCAGTC
195 CCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * *
19452248 TAAGATCGGACTGGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGTAGAGGGGAACTCGGCCG
260 TAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
* * * * *
19452313 ATCCCCGACTTGCGCATCCTGCCCCTGTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTTGGTTG
325 ATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
** ** *
19452378 ACTTAGGCATACGGAGTTCATTCCTGGTCTAAAAATACGGAGTTCATTGCCAGTCTAAGATCGGA
389 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* ** * *
19452443 CCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATC-TTTTTCTTC
454 CCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTG-CAGCATTTTTCTTC
** *
19452507 -CTCGGGGCACCA---TC---G---C--CGGAGAACCTGACCGACGGCATTAAGGTTTCGACGAT
518 GC-CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
19452560 CAGGGGGGCCGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
582 C-GGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
19452625 GCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
645 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
19452690 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATAGTCACAAAATC
710 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
19452755 TTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCACGTC
775 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
19452820 TACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
840 TACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* * * *
19452881 TTTCAAAAATCGTGAAAAATAGAAAGCGA---GTCTTGCCACGAAACTTCACATGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
19452943 GGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCA-AATATATGAAGATGTGC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA-ATATGAAGATGTGC
* * *
19453007 CTAAACCC-CCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGACCTAGTG
130 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * * *
19453071 CCGCCCGCCAGCCTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCTA
195 CC-CAC-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * **
19453136 GTCTAAGATTGGACCGGATCGAGGGTTG-GGTCAGCAGGATTGGCAGCACATAGAGGGGGACCCG
257 GTCTAAGATCGGACCGGATCGAGGGTTGCGG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * * * *
19453200 ACCGATCCCCGACTTGCGCAGCCCACCCCTCTGACCGGTTGAGTGCCCGCATGCTCATTTCATGG
321 ACCGATCCCCGGCTTGCGCA-TCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* *
19453265 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
385 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
19453330 CAGACCGGAACGAGGGTTACGATAGCACATGCTGGGCTC-GAGCATGTGCTGGTGCCGTATTTTT
450 CGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCAGCATTTTT
* * * * * * *
19453394 CTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCACTGAGGCTCTGAC
514 CTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * *
19453459 GATCGGGGGGCCGGGGGGGATGTCCGCACATGAT-TGCGATGGGAGTTGGTACTTGGCCCTTATA
579 GATCGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
19453523 TTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTA
642 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
19453588 CAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAA
707 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
19453653 ATCTTGTAAATTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAAATAAAAGGATCAC
772 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** * * *
19453717 ATCTACCAAGTTTATGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CTAGACCGTAAAAA
837 GTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCTCGA-ACCGCAAAAA
19453781 G
900 G
* * *
19453782 TTTCAAAAATCGTGAAAAATCGAAAACGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
19453847 GGACCATTGTATGAAATTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * *
19453912 TAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCGGCATAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * *
19453977 CCACCCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTTGGCATATGGAGTTCATTCCCAGTCT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * * *
19454042 AAGATCAGATCGGATCGAGGGTTGTGGCAGTAGGATTGACAGCATGTAGAGGGGGACCCGATCGA
261 AAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * * * *
19454107 TCCTCGACTTGTGCATCCCGCCCTTCTGGCCGGTTGAGCACCCGCACGTTCGTTTCATGGGTTGA
326 TCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* * *
19454172 CTTAGGCATACGAAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
390 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * **
19454237 CAGACCGAGGGTTGTTG-CAGCACATGCTGGGCTC-GAGCATGTGCTGGTGCTTCATTTTTCTTC
455 CGGACCGAGGGTTG-CGACAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCAGCATTTTTCTTC
* * ** * * * *
19454300 -CTCGGGGCACCATCG-CTTGAGAATCACCGAAGAACCTAACCGACGGCATTAGGGTTCCTG-TG
518 GC-CGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACG
* *
19454362 ATGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGCCCCTTATATTG
580 ATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
19454427 GCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
645 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * * *
19454492 GTTTGCCGCCAGTAGCCCTTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATTGTCACAAAAAC
710 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
19454557 TTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
775 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
19454622 TACCAAGTTTTGGGCCAAAACTCCTTCCAAAAGAATTTTAAAAAATGC-CGAACCGCAAAAAG
840 TACCAAGTTTGGGGCCAAAACTCCTTCGAAAA-AATTTTAAAAAAT-CTCGAACCGCAAAAAG
*
19454684 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTTAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * * **
19454749 GGGCCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGTAGAATTATGAATTTGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* *
19454814 TAAACCCACCTACCACCCTATCGATCCACGGCTGGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* ** * * * * *
19454879 CCGCCTACCCACCCGCCCACTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTAT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * * * * *
19454944 AAGATCAGACCACACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAAGGGGACCCGCCCGA
261 AAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * * *** ** *
19455009 TCCCTGGCTTGCGCATCCCGTCCCTCTGGTCGG-TGACATTGGGTTCCGACAATCGGGGGGGCTG
326 TCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTG--A--GCG-CCCG-C-A-C-GCTCGTTTC
* * * * * *** * ** ** * ****
19455073 AGGGGGGTGTG-CGTA--CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
381 A--TGGGT-TGACTTAGGCAT-ACG-GAGTTCATTCCCAGT-CTAAG--C--ATA-CGGAGTTC-
* * ** ** ** *** ** * ** * ***
19455135 ATCCCTCA-TCAAACCTCCAAAACTCACACC--CCCTT-AAAGAGCATTTG-AGATTTTACAGGC
434 ATTCC-CAGTCTAAGAT-C-GGAC-CGGACCGAGGGTTGCGACAGCACATGCTG-GGCT-CAGGC
** * * **** ** ** * ** *
19455195 -T-TGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTC--A--ATTGGTCACAA
493 ATGTGCTG-GTGCAG-CATT----TTTCTTCGCCGGGG-CACCATCGTCGGAGCA-TCGTCGGAG
* * * * ********* * ** *
19455254 AATCTTGTA-C-A---C-TTCGAGTT-TGTA--ACTC--AATTTTTTTGTGCATGC-CAACA-AA
550 AA-CCTG-ACCGACGGCATTGGGGTTCCG-ACGA-TCGGGGGGCCGGGGGGTGTGCGC-ACATGA
** * * * *** * * * *** * ** ** **
19455306 AAT-AGAAGGAT-CACAT-C-T-ACCAAC-T-T-TGGGGCCAAAACTCCTTCGAAAAAATTTTAA
610 TGTGCGATGGGTGCTGGTACTTGGCC--CTTATATTGGCCCCCTA-TCCCTC-ATCAAACCTCGA
* * *** * * * * * * * *** * *** *
19455363 AAAATC-TTGCACCGTAAAAAG--TTTCCAAAATCATGA-AAAATAGAAAACCAATCGTCTTGCC
671 GAACTCACACCCCCTTAAAGAGCATTT--GAGAT-TTTACAGGTTTG-CTGCC-A--G--TAGCC
* * * * * *
19455424 ATGAAACT-TCACGTGAAGGCTTAAGGGAC-CATTGTATGAATTTACAA-GG-CATGAAAATGGC
727 ATTAAAGTGT--C-TGAA---AT-GGGGACAC-TT-T-T---TTCA-AATGGTCA-CAAAAT--C
* * *** ** * *** * ** * * ** ** **
19455485 ATTG-GCA--TGGAG-AAATA--TGAAGATGTGACT-AAACCCACCTACCACCCTATCGATCCAC
775 -TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC-AAGGAT-CAC
* * * * *** ** ****** ****** **
19455543 GGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGC-CCACCCGCCCGCTCGTTTTGTCGGTTGG
837 GTC-TAC-CA---AG--T-T-TGG--GGC-CAAAACTCC-TTCG--AAAAAATTTTAAAAAATCT
** * **
19455607 CTTA-GGCATACGGAG
887 CGAACCGCA-A-AAAG
*** ** * * * * * ** ** *
19455622 -TTC-ATTCTCAATCTAAGATCAGACCAAAGTGAG-GGT-TGCGGCAGCAGGATCGGCAGCACAT
1 TTTCAAAAATC-ATGAAAAAT-AGA--AAA-CGAGTCGTCT--TGC--CATGA--AACTTCACGT
* *** *** **** * ** ** ****** * * *
19455683 GGAGGGGGACTCGACCGA-TCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
55 GAAGGCTTAAGGGACC-ATTGTATGAATT-TACAAGCCATAAAAATGG-C--AT-TG-GCACGCA
*** * ** * ** * * * * * *
19455747 CGCTCGTTTCGTGGAT-TGACTTAGGCATACGGAGTTCATTCCCACTCTA-AGCAT--ATGGAGT
113 -G-AAATAT-GAAGATGTG-CCTA---A-ACCCA---C-CTACCACCCTATCG-ATCCACGG-CT
* ** * * * * * **
19455808 T---CATTCCCAGTCTAAGATC-GGACCGGACCAAGGGTTCCAACAGCACTTGCTAG---GCTCG
164 TGCGCA-TCCC-GTCT---CTCTGG-CC-GACGTAGTG-CCCACCCGC-C-CGCCCGCCCGCTC-
** *** * * * ** ** * * *
19455866 GGAT-GTGCTGG-TGCCGCATTTTTCTTCTTCGGGGCACCATCGTCGAAGAACCTAACCAACGGC
218 GTTTCGT-C-GGTTG--GC-TTAGGC--ATACGGAG-TTCAT--TCCCAG--TCTAA-GATCGG-
* * * * * ** * ** * * **
19455929 ACTAGGGATCCGATGATCGGGGGGTCAGGGGGGT-GTGC-GCACATGTTGTGCGATGGGTGCTGG
269 AC--CGGAT-CGAGGGT--TGCGG-CAGCAGGATCG-GCAGCAC--GCAGAG-G--GGG-ACCCG
** ** ** ** ** * * * * * * **
19455992 TA-CG-TGGCC--CTT--ATATTGGCCCC-CTATCCCTCATCAAACCTCCAAAACTCACACCCCC
321 -ACCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGC-T--GAGCGCC----CGCACGCTCGT
* * * * ** * * * ** **
19456050 TTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTTAA--ATGGG
378 TTCATG-G--GTTG--A-CTT--AGGCATAC-G-GAGT--TCATTCCCA--GTC-TAAGCATACG
* * * * * * * * * ** **
19456112 GACACTT--TTTCAATTGGTCACAAAATCTTGTA-C--ACTTCGA-GTTTGTAGCTCAATATTTG
428 G--AGTTCATTCCCA---GTC-TAAGATC--GGACCGGAC--CGAGGGTTG-CG-ACAGCACATG
* * ** * * * ** ** *** * ** *
19456171 -TGTGCATGCCA-ACAAAAATACAAGGAT-CA-CATCTACCAACTTTGGGACCAAAAACTCCTTC
481 CTGGGC-T--CAGGC--ATGTGC-TGG-TGCAGCATTTTTCTTCGCCGGG-GC-ACCA-T-CGTC
* ** * *** * * * * **** * ** ***
19456232 GAAAAAAT-TTTAAAAAATCTTGA---ACCGTAAAAAGTTTCC-AAAATCATGAAAAGTAGAAAA
535 G-GAGCATCGTCGGAGAA-CCTGACCGACGGCATTGGGGTTCCGACGATC--G----G--G-GGG
* *** * * * * * * * * * *
19456292 CCAGTCGTCTTGCCATGAAACTTCACGTGAAG-GCTTAAGGGAGCATTGTATGAATTTACAAGTC
589 CC-G-GGGGGTG---TG---C-GCACATGATGTGC-GATGGGTGC--TG---GTACTT---GGCC
* * * * * ** * * ** ** * *** * *
19456356 ATAAAAATGG---CAT-TGGCACATAGAAATAT-GAAGATGTGCCTAAACCCACC-T-GCCACCC
636 CTTATATTGGCCCCCTATCCCTCAT-CAAACCTCG-AGAACT--C-ACACCC-CCTTAAAGAGCA
* * ** * ** * * ** * * ** ***
19456414 TAT-CGA-TCCAC-GGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCACCCG
695 TTTGAGATTTTACAGG-TT-----TGCTG-C-CAGTAGCC-A-TTAAAG--TGTCTG-AAATGGG
** * ** ** ** ** * * * * * * * **
19456476 CCCGCTCGTTTC--ATCGGTTGGCTTAGGCATACAGAGTTCA-TCCCCAG-TCTAAGATCGGACC
747 GACACTTTTTTCAAAT-GG-T--CACA-AAAT-C-TTGTACACT-TCGAGTTTTTAGCT-GAATT
**** * ** * *
19456537 GGACTGAGGGTTG-CAGC----A-GC-AGGATCGACAG-C-ACGCAGAG---GGGGACCCGATCG
803 TTTTTG-TGCATGCCAACAAAAATACAAGGATC-AC-GTCTAC-CA-AGTTTGGGG--CC-A---
** * *** **** **** * * ****
19456590 ATCCCCGGCTTACGCATCCCACCCCT--CTGGTCGGCTGAGCGCCCGCACGCTCG
857 AAACTC--CTT-CG-A-AAAAATTTTAAAAAATC-TC-GA---ACCGCA-AAAAG
***** ** * * * * * *
19456643 TTTCGTGGGT--TG--ACTTAGGCATACGGAGT--TCATTCCCAGTCTAAGCAT-ACG-G-A-G-
1 TTTCAAAAATCATGAAAAATA-GAAAAC-GAGTCGTC-TTGCCA-T-GAAACTTCACGTGAAGGC
* ** * * ** ** * * * *
19456697 TTCA--TTCCA-AGTCT-AAGAT-CGAA-CCGA-ACCAA-GG-GTTGTAGC-TGCAG-GAT-CGA
61 TTAAGGGACCATTGTATGAATTTAC-AAGCC-ATAAAAATGGCATTG--GCACGCAGAAATATGA
* * ***** * * * * * *
19456750 CAGCACG-G-----A--GA-GGGGGACCCAACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGC
122 -AG-ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * ** * * * * **
19456806 C-A-GCT-GAG-CC-CCCGCACGCTCATTCCATGGGTTGACTTAGGCATACAGAATTC-ATTCCC
185 CGACG-TAGTGCCCACCCGCCCGC-C-CGCC--CGCTCG--TT-----T-C-G---TCGGTTGGC
* * *** *
19456865 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTAACAGCA-C
233 --T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGG
* * ** ** **** * * * **
19456929 ATGCTGG--GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG--GGCACCATCGTCAGAG
295 AT-C-GGCAGCAC--GCA-GAGGGGGACCCG-ACCGATC--C-CCGGCTTGC-GCATC--C-GCC
* * * * * * * ** ** *
19456990 CATCATCGG-AGAACCTGACCGGCGGCATTG-GGGTTCTGGCGATCGGGAGGGCCGAGGGGGTT-
347 CCTC-T-GGCCG--GCTGAGCGCCCGCA-CGCTCGTT-T--C-AT-----GGGTTGA----CTTA
** * * * ** * * *** * *
19457052 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGG-CCCCGTATCCCTCGTC
394 G-GCATAC-GGA-GTTC-AT---TCCCAGT-CTAAG--C--ATA-CGGAGTTCAT-TCCC-AGTC
* * * ****** * * ** *
19457116 -AA-ACCGGGA--GAACCCACACCCCCATACAG-AGCAT-TTGAGATTTTACAGG--TTTGCTGC
444 TAAGATC-GGACCGGACCGAGGGTTGC-GACAGCA-CATGCTG-G--GCT-CAGGCATGTGCTG-
** * **** *** * ** *** * * ** *
19457173 CAGTAGCCATTAAAGTGTCTGAAATGGG-AACACTTTTTTCA-AATGGTCACAAAATCAC-G-CA
501 GTGCAG-CATTTTTCT-TC-G-CCGGGGCACCA-TCGTCGGAGCATCGTCGGAGAA-C-CTGAC-
** * ** * * ** *** ** *
19457234 CG-CTCCTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCCAGTCTAAGATTGGACCGGAC-
558 CGACGGCATT-G-GGGTT--CCGACG-AT-CGGGGGGC---CGGGGGGT--G--T-G--CGCACA
* * * * ** * ** * *** * *
19457297 CGAGGGTTACGGTAGCAGGATCGACAACACGCAGCGGGGGACCCGGTCGATCCCCGGCTTGCGC-
607 TGA-TG-TGCGAT-G--GG-T-G----CTGGTA-C-TTGG-CCC--T-TAT-ATTGGC--CCCCT
* *** * ** ** * **
19457361 ATCCCGTTCCTCTGGCCAGCTGAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAG-GCATACG-
652 ATCCC--TCATCAAACC-TC-GAG-AACT-CACAC-C----C---CCTT-A--AAGAGCATTTGA
* * * * * * *
19457424 GAGTTCATTCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACT-AAACCGAG
700 GA-TT--TT-ACAGGT-T-TGC-TGC-CAG-T-A--GCCA-T-TAAAG-T--GTCTGAAA-TG-G
*** ** ** * * ** * * * ** * * * * *
19457486 GG-TTGTGGTAGCACATGCT-AGGCTCAAGCATGTGCTGGTGCCGCACTTTTCTTCGCCGAGTTA
746 GGACACTTTTTTCAAATGGTCA--CAAAATCTTGTAC-ACT-TCG-A-GTTT-TTAGCTGAATT-
*** * * ** ** *** * *** ** ** ******
19457549 CCATCG-CCA-GAGAACCTGACCGAC-AGCGTTGGGGT-T-CCGGCGATCGGGAGGCCAGGTGGG
803 TTTTTGTGCATGCCAA-CAAAAATACAAG-GATCACGTCTACC-AAG-TTTGG-GGCCAAAACTC
* * ** * * **** * * * ***
19457609 GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG
863 CT-T-CG-AAAAAAT-TTTAAAAAAT-CTCGAAC----CGC--A-AAAAG
* * * * * * ** *
19457659 CCCCCTATCCCTCATCAAATCTTGAGAACTCACACCCCCTTAAA-GAG-CAT-TTGAGATTTTAC
1 -----T-T---TCA-AAAATCATGAAAAAT-AGA-------AAACGAGTCGTCTTGCCA--TGA-
** ** * * * * ** * * * *
19457721 AGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGA-AATGGGAACACTTTTTTCAAATGGTCACAA
45 AACTTCACGTG--A--AGGC-TT-AAG-G---GACCATTGTATGA--ATTTAC-AA--GCCATAA
* * * * * **** *** * * **
19457784 AATCTTGTACACTTCGAGTTTTTAC-C-TAAATTTTTTTATGCATGCC-AAGAAAAATACAAGGA
95 AA--ATG-GCA-TT-G-G----CACGCAGAAATATGAAGATG--TGCCTAA-ACCCA-CCTACCA
* * * * * * * * * * *
19457846 TCATGTCTA-CCA-AGTTTGGAGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTCGATCCAT
146 CCCTATCGATCCACGGCTT-GCG-C----AT-C--CCG------TCT------CTCT-G-GCC-G
*** **** **** ** ******* ** ** * * ** *
19457909 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC--TTGCCATGAAACTTCACGTGAA
187 ACGTAGTGCCCACCCGCCCGCCCGCCCG--CTCGTTTCGTCGGTTGGC-TTAGGCAT-ACG-G-A
* *** * ** * **** * * * * **
19457972 GGCTTAAGGGACCATTGTATGAATTTACAAGTTATAAAAATCTCATTGGTATGCAGAAATATGAA
246 -G-TTCA-TTCCCA--GTCT-AAGAT-C--G-GA-CCGGATC-GA-GGGT-TGCGGCAGCA-G--
* * ****** * * * * *
19458037 GAT-GTGCTTA-AACCCACCTACCG-CCCTATCGATCCAAC-GCTTGCGCATCCCGTCTCTCTGG
294 GATCG-GC--AGCACGCAGAGGGGGACCCGACCGATCC-CCGGCTTGCGCAT-CCGCCCCTCTGG
* * * * * *
19458098 CCGGCGTAGTGTCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGTGTT
354 CCGGC-T-GAG--CGCCCG--CA--CG----CTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* *** * ** * * * **
19458163 CATTCCCAGTCTAAG-AT-CAGACCGCA--CCAAGGGT-TG--CGGCAGCAGGATC---GGCAGC
407 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG-A-CCGGACCGAGGGTTGC
* * * ** * * * ****** *
19458218 -AC-GCAGAAG--GGGAC-CCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTCGCCGGTTG-A
470 GACAGCACATGCTGGG-CTCAGG-C-AT--GTG-CTGGTGCAGCATTTTTCT-TCGCCGG-GGCA
* * ** ** * * * * * ** ** *
19458277 GCGTCGGTACGCTCGTTTCATGGGTTG-ACTTAGGCAAACGG-AGTT--CATTCCCAGTGTAAGA
527 CCATC-GT-CG-GAGCATCGTCGG-AGAACCT-GACCGACGGCA-TTGGGGTT-CC---G-ACGA
* * * * * * *
19458338 T-GGACCGGACCGAGGGTTACG-GCAGCACATGCTGTGC--TCGG-GCAT-GTACTGGTGCCACA
581 TCGG--GGGGCCGGGGGGT--GTGC-GCACATGATGTGCGATGGGTGC-TGGTACTTG-GCC-C-
* * * * * * * * * * ** ** *
19458397 TTTTTCTTCATCAGGGCACC-ATCGCTGGAGC-ATCATCGGAGAACCTGAC-CGACGGTAATG-G
637 ---TT-AT-AT-TGGCCCCCTATCCCT-CATCAAACCTC-GAGAA-CTCACACCCCCTTAAAGAG
** * * ** * *** * * * * * * * *
19458458 GGTTACGGCGA-TCGAGGGGCCGGGGGGGTTCACA-CATG--ATGTGCGATGGGTGCTAGTACT-
693 CATT--TGAGATTTTA----CAGGTTTGCTGC-CAGTA-GCCAT-T--AAAGTGT-CT-GAAATG
* * * ** ** * ** * * *** **
19458518 TGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCTTTAAAGAGC
745 GGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAGTTT--TTAGC
** * * * * *
19458581 ATTTGAGATTTTACAGGTTTGCTGCTAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTT
797 ---TGA-ATTTT-----TTTG-TGC-A-T-GCCAACAAAAAT-AC---AA---GGATCACGTCTA
* * * **
19458644 TCAA--AT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAA
842 CCAAGTTTGGGGC-CAAAA-C---T-C-CTTCGA------A----AA----AAT-T---TT----
* * *
19458706 CAAAAATATAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCG
878 ----AA-A-AA--ATCTCG--AACC---------G-CAAAAA-------G
* *
19458756 AAAAAATTTTGAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTT
1 -------TTTCAAAAAT--C--A---T-----G-------AA-----A--AATAGAAAACGAGTC
* *
19458821 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATATACAAGCCATAAAAA
33 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
19458886 TGGCATTGGCACACAAAAATATGAAGATGTCCCTAAACCCACCAACCACCCTATCAATCCACGGC
98 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
19458951 TTCCGCATCTCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGG
163 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* ** * * *
19459012 TTGGCTTAGGCATACAGAGTTCATTCTTAGTCTAAGATCGGACCAGAATCGAGGGTTACGGCAAC
228 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GGATCGAGGGTTGCGGCAGC
* * * *
19459077 AGGATCGCCAACACGCAGAGGGGGACCC-AGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGC
292 AGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGC
* * * ** *
19459141 AGGCCGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAATCTA
355 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * * *
19459206 AGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAAAGAGGGTTGCGGCAGCATATACTGG
420 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGG
* * * * * * *
19459271 GCTCGGGCATGTGCTGCTGCTGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCAGAG
485 GCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
19459336 AACCTGATCGGCGGCATTGGGGTTCCGAAGATCGGAGGGGCCGGGGGGGTGTGCGCAAATGATGT
550 AACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGGTGTGCGCACATGATGT
* **
19459401 GCAATGGGTGCTGGTACTTGAACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
613 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19459466 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
678 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** **
19459531 TGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTTAAGTTTTTAGCTGAAAGTTTTT
743 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
19459596 GTGCATGCCAAAAAAAATATAAGGAACACGTCTACAAAGTTTGGGGCCAAAATTCCTTCCAAAAA
808 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAA
* * *
19459661 ATTTTTGAAAAATCTCAAACCGTAAAAAG
873 A-TTTTAAAAAATCTCGAACCGCAAAAAG
* *
19459690 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
19459755 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTAGGCAGAAAGATCAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
19459820 TAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGT--
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * *
19459883 ------GCCTGCCCACCCGCTCATTTCGTCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* *** * * ** * * * ** **
19459942 AAGATTGGATAAGACCGAGGGTTGTGATAGAAGGATCGACAGCATGCAGAAAGGGACCCGGTCGA
261 AAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * *
19460007 TCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGA
326 TCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
19460072 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C----A---GA-
390 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
19460115 ---A-CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGGGCTGGTGCCGCATTTTTCTTCAC
455 CGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCGC
* * * * ** * * *
19460176 CGAGACACGATCGCCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTTCGATGATCGG
520 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* * *
19460241 GGGAGACGGTGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
585 GGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
19460306 CCTATCCCTAATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
649 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
19460370 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
714 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
19460435 ACACTTTGAGTTTTTAGATGAATTGTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTAC
779 ACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * *
19460499 CAAGTTTGGGGCCAAAACCCCTTTCGAAAAAGTTTTAAAAAGTCTCGAATCGTAAAAAG
843 CAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
*
19460558 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
19460623 GGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGCAGAAATGTGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
19460688 TAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAACCCGTCTCTCTGG-CTAGCGTAGTG
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTG
* * * *
19460752 ----CCCGCCCGCCCGCCTGCTCGTTTC-CCGGTTGGCTTAAGCATACGGAGTTCATTCCTAGTC
195 CCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * *
19460812 TAAGATCAGATCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGTACGCAGAGTGGGACCCGACCG
260 TAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
* * ** * *
19460877 ATCCCCGGCTTGTGCGTCC-CACCCTTCTGGCTAGCTGAGCGCCTGCATGCTCGTTTCATGGGTT
325 ATCCCCGGCTTGCGCATCCGC-CCC-TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * ** * ** * *
19460941 AATTTAGGGATATAGAGTTCATTCCCAGTCTATGCATATAGAGTTCATTCCCAGTCTAGGATTGG
388 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * ** ** ** * * ** *
19461006 ACCGGACCAAGGGTTGTGGCAGTGCATGCCAGGCTTGGGCTTCTATTGGTGCCGCATTTTTCTT-
453 ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTC
* * *
19461070 --C---G---C--C--C-GAGCATCGTCGGAGAACTTGACCGACGGCATTGCGGTTCCGGCGATC
518 GCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * * *
19461122 GGGCGGGCTGGGGGGGGAGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATG
583 GGG-GGGC--CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
19461187 GCCCCCTATCCCTCATCAAACCTCGAGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAG
645 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
19461252 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
710 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
19461317 TTGTACAGTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAGGTC
775 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
*
19461382 TACCAAGTTTGGGGCCAAAAAC-CATTTCGAAAAAATTTTAAAAAATC-CAGAACCGCAAAAAG
840 TACCAAGTTTGGGGCC-AAAACTC-CTTCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAG
*
19461444 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTCAA
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AA
* ** * * * *
19461509 -GGAACATTGTATGAATTTACAAGCCATAAAAATCTCTTTGGCATGCAAAAATATGAAGATTTGC
65 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * * * *
19461573 CTAAACCCACCTAGCACCCTATTGGTCTACGGCTCGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
130 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
** * * *
19461638 CCCA------------CCCATTCGTTTCGTCAGTTAGCTTAGGCATATGGAGTTCATTCCCAGTC
195 CCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * ** * * * **
19461691 TAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGGTAGCACGCAGAGGGGCACCCGGTCG
260 TAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
* * * *
19461756 ATCCCCGGCTTGCACGTCCCGCCCCTCTGGCCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTG
325 ATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
19461821 ACTTAGGGATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTACGATCGGA
389 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * *
19461886 CCGGACCAAGGGTTGTGGCTGCACATGCTGGGTTCGGGCATGTGCGGGTGCCGCATTTTTC-T--
454 CCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCG
* *
19461948 -----------TCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCG
519 CCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-
* * * * *
19462002 GGGGGGCCAGGGCGTGTGCGCACATGATGAGTGATGGGTGCTGGAACTTGGCCCTTATATTGGCC
583 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
19462067 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
648 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
19462132 TGCTGCCAGTAGCAATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
713 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
19462197 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAATAAAAGGATCACGTATAC
778 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* *
19462262 CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAATCGCAACAAG
843 CAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
19462321 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
19462386 GGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGCAGAAATAAGAAAATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* *
19462451 TAAACCCACCTACCACCCTATCGATCCACTGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * * * *
19462516 CCGCCCGCCCGCCTGCCCGTTCATTTCGTCGATTGCCATAGGCATACGGAGTTCATTCCCAGTCT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
19462581 AAGATTGGACCGGACCTAGGGTTACGGTAGCAGGATCGGCAGCACGCAGATGGGGACCCGGCCTA
261 AAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * * *
19462646 TCACTGGCTTACACATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCAAGCTCGTTTCATGGGTTGA
326 TCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
19462711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------CGGAC
390 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * *
19462755 C-GA---A-GGTTGC-AGCAACACATGCTGGGCTCAGGCATATGTTGATGCCGCATTTTTCTTTG
455 CGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCG
* * * *
19462814 CCAGTGCACCAACGTCGGAGCATCG-CTGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATC
519 CCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * * * * *
19462878 GGGGGGGTCGAGGGGTGTGCGCACATGATGTGCAATGGGTGCGGGTACTTGGCCCTTCTATTGGA
583 -GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
19462943 CCCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
647 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
19463008 TTTCTGCTAGTAGCAATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTT
712 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
19463072 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
777 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
19463137 CCAAGTTTGGGGCCGAAACTCCTTTTGAAAAAATTTT-AAAAATCCCGAACCTCAAAAAG
842 CCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* *
19463196 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
** * * * * *
19463261 GGATGATTATATGAATTTACATGCCATAAAAATGGCATTGGTAGGCAGAAATATGAAGATGTACC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* **
19463326 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGTGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
** ** * * * * * *
19463391 CTGCTGGTCCACCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * ** *
19463456 AAGATTGGATCAGA-CTGAGGGTTATGGTAGCAGGATCGATAGGACGCAGAGGGGG-CCCGACCG
261 AAGATCGGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
* * * * *
19463519 ATCCTCGGCTTGTGCATCC-CGCCCTTTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
325 ATCCCCGGCTTGCGCATCCGC-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * * *
19463583 ACTTAGGCATCCGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAATCTATGATCGGA
389 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * ** * *
19463648 TCGGACGGAGGGTTACGGCAGCACATTTTAGGCTC-GGACATGTGCT-GTGCTGCATTTTTCTTC
454 CCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGG-CATGTGCTGGTGCAGCATTTTTCTTC
** * * *
19463711 ATCGAGGCGCCA---T-----CA-C--CGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATC
518 GCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * *
19463765 GGGGGGCCGAGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAC-TGGTCCTTATATTGGCC
583 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
19463829 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
648 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
19463894 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
713 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
19463959 TACAATTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTAA
778 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * *
19464024 AAAGTTAGGGGCCAAAACACCCTCTGAGTTTTTAGCTAAAAGTTTTTGTGCATGCCAACAAAAAT
843 CAAGTTTGGGGCCAAAACTCCTTC-GA------A---AAAA----TT-T---T----A-AAAAAT
** *
19464089 ACAAGGAACACGTCCACAAAGTTTGGGGCCAAAAC
885 -C-TCGAAC-CG----C--A----------AAAAG
19464124 TCCTTCCAAAAAAATTTTGAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
1 T--TT-C------------AAAAA--TC--A---T-----G-------AA-----A--AATAGAA
* ** * *
19464189 AACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGATGATTATATGAATTTACATGC
25 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
19464254 CATAAAAATGGCATTGGTAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
90 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * ** *
19464319 TCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----ACCCGCCCGCCAACCCGCTCAT
155 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCCCGCTCGT
** ** *
19464380 TTCGTCGGTTGGCTTAGGCATACGGA--TC-TATAGCA--C-ACAGAGGGGACC-CAGTCGA---
220 TTCGTCGGTTGGCTTAGGCATACGGAGTTCAT-TCCCAGTCTA-AGATCGGACCGGA-TCGAGGG
** * * * * * * * ** * * * * *
19464435 TCCCCGGCTTGCA-CATC-CCACCCCTCTG-GCTGG--CTGAGCG--CCCACACGC-T-CG-TTT
282 T-TGCGGC-AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC-C-GGCTTGCGCATC
* ** * * ** ** **** * *
19464490 CG----T-GGGTTGACTTAG-G--CATACG-GAG-TTCAT-TCCCGTC-TAAGCATACGGAGTTC
343 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * *
19464543 ATTGCCAG--T---C-TA---AG---------A-TC----A---GACCGGACCGAGGGATACGGC
408 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGAC
* * *
19464582 AGCACATGCTGGGCTC-GAGCATGTGCTGGTGCCA-CATTTCTCTTCGTCGGGGCACCATCGCCG
473 AGCACATGCTGGGCTCAG-GCATGTGCTGGTG-CAGCATTTTTCTTCGCCGGGGCACCATCGTCG
* * * *
19464645 GA-CATCGTCGAAGGACCTGACCGACGGCATTTGGGTTCCGACGATCAGGGGGCCAGGGGGGTGT
536 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGT
* *
19464709 GCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
600 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
19464774 CCTCGAGAACTCACACCCCCTTAAATAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATT
665 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
19464839 AAAGTGTCTTG--ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTT
730 AAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* ** * *
19464902 AGCCGAATTTTTTTGTGCATGCCAA-AAAAAGTATGAGGATCACATCTACCATGTTTGGGGCCAA
794 AGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** * * * **
19464966 AAAACCTTCAAAAAAAATTTTAAAAAATCCCAAACCTTAAAAAG
858 AACTCCTTC-GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* *
19465010 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGACGGCTTAAA
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
19465075 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
19465140 CAAACCGACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTATCTGGCCGACGTAGT--
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* *
19465203 ----------GCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * ** * * * * * **
19465258 AAGATCAGACCAGATTGAGGGTTGTGGTAGTAGGATCGATAGTACGTAGAAGGGGACCTGGCTAA
261 AAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * *
19465323 TCCCCGACTTTCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGA
326 TCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* * * * *
19465388 CTTAGGCATACGGAGTTCATTCCCAGTCTTAGCATACGGAGTTCATTCCCAGACTATGATCAGAT
390 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* *
19465453 CGGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA-CATTTTTCTTCG
455 CGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTG-CAGCATTTTTCTTCG
* * * * * *
19465517 TCGGGACACCATCGTCGGAGCATCGTCGGAGAACCTCACCGGCGACATTAGGGTTCCGACGATCG
519 CCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* *
19465582 AGGGGGCCGGAGGGGGGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTG
584 -GGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
19465647 GCCCCCAATCCCTCAT-AAAGCCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACA
645 GCCCCCTATCCCTCATCAAA-CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
19465711 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-GATGGGGACAC---TTT----T--T-------T
709 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
19465759 C----A-A-----A---TTTAGCTTAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCATGT
774 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** * *
19465811 CTACCAAGTTTACGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGATCC-AAAAAAGG
839 CTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA-G
* * *
19465874 TTTCGAAAATCCTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * * *
19465939 GGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGTAGAAATTTAAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * * * *
19466004 TAAACCCACCTACCACCCTATCGATCCACGGTTTACGTATCCTGTCTCTCTGACCGATGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-
* * * * * *
19466069 CCGCCCGTCCGCCCGCACGCCCGCTCATTTTGTCGGTAGGCTTAGGCATACGAAGTTCATTCCCA
195 CC-CAC--CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * *
19466134 GTCTAATATTGGACTGGACCGATGGTTGCGACAGTAGGATCGGCAGCACGCAGA-GGGG----GA
257 GTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
** *
19466194 -CG-----CGGC-T--G-ATCC-CCAAGT-T-----G-T----------ACGTTCGTTTCATGGG
322 CCGATCCCCGGCTTGCGCATCCGCC-CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
**
19466231 TTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
386 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
19466296 AGACCAGACCGAGGGTTGTGACAGCACATGCTGGGCTC-GAGCATGTGCTGGTGTC-GCGTTTTT
451 GGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAG-GCATGTGCTGGTG-CAGCATTTTT
** *** * * ** * *
19466359 CTTCATCGGGGCACCATTACCAGTGCATCACCGGAGAACCTGACTGGCGGCATTGGGGTTCCGAC
514 CTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * * * * ***
19466424 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTACCGCTTCTTGGTAGTTATAT
579 GATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
19466489 TGGCCCTCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
643 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
19466554 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAA
708 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
19466619 TCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCAAG
773 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
19466683 TCTACCAAGTTTGAGGCCAAAACTCCTTTCGAAAAAATTTT-AAAAATCCCAAACCGCAAAAAG
838 TCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
19466746 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
19466811 AGACCAGTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
19466876 TAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * *
19466941 CC-CTCCGCCCGCCCGTCCGCTGGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTC
196 CCAC-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * * * * *
19467005 TAAGATCGGATCAGATTGAGGGTTGCTGTAGTAGGGTCAGCAGCACGTAGAGGGGAACCCGGCCG
260 TAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
* * ** * *
19467070 AT-CCCGAACTTGCGCATCCCACCCCTCTGGCCAACTGAGCAG-CTGCACGCTCGTTTCGTGGGT
325 ATCCCCG-GCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCATGGGT
* ** * * *
19467133 TGACTTACGCATACATAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTGAGATCA
387 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * * *
19467198 GACTAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTTTCA-CATTTTTCT
452 GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGG-TGCAGCATTTTTCT
* * * * *
19467262 TCGCCGGGGCACCAACGCCGAAGCATCGCCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGA
516 TCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* **
19467327 -C------CGGGGGGGTGTATGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
581 TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
19467385 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGC
646 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
19467450 TTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
711 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
19467515 TGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCT
776 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** * * *
19467580 ACCAAGTTTTTGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCCAACTGCAAAAAG
841 ACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
19467641 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
19467706 GGACCATTGTATGAATTTACAAGCCATAAATATGGCATTGGCAGGCAAAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * * *
19467771 TAAACCAACCTACCACCCTATCGATACACAGCTTGCGCATCCTGTCTCTCTGGCCGACGTCGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * *
19467836 CCGCCCGCCCGCCCGCCGCCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTC
196 CCACCCGCCCG--C-CCG--C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * ** ** * * *
19467901 CCAGTATAAGATCGGATCGAACCGACGGTTTTGATAGCAGGATCAGCAGCACGTAGAGGGTGACC
254 CCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* ** * * *
19467966 TGGTCGATCCCCGGCTTGCACATCC-CGCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGT
319 CGACCGATCCCCGGCTTGCGCATCCGC-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
*
19468030 GGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAG----C--A--T-A---CCAGT-TAAG
383 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
19468082 ATCGGACC-AATCCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCA-CATT
448 ATCGGACCGGA-CCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTG-CAGCATT
* ** * * * ** *
19468145 TTTCTTCGTCGGGGCACCATCACCTGACCATCG-CTGGAGAACCTGACTGGTGGTATTGGGGTTC
511 TTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTC
* * * * *
19468209 CCACGATCGGGGGGGCCGGGGGGGTATGCGCACAT-AGGTGCGATGGGTTCTGGTAATTGGACCC
575 CGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCC
*
19468273 -TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
637 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
19468337 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
702 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
19468402 ACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTTTGCATGCCAACAAAAATACCAGG
767 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * * * * *
19468467 ATCATGTCTACCAAGTTTGGGGACAAAACTCCATCCAAAAAAATTTAAAAAAATCCCAAACCGTA
832 ATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACCGCA
19468532 AAAAG
896 AAAAG
* *
19468537 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
19468602 GGACCATCGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* *
19468667 TAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGT--
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * * *
19468730 ------GCCTGCCCGCCTGCTCGTCTCGTCGGTTGGCTTAGGCATACAGAGTACATTTCCAGTCT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * * * * *
19468789 AAGATTAGACTGGACCAAGGGTTGCAGCAACAGGATTGGCAGCACACAGAGGGGGACCCCACCGA
261 AAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * *
19468854 TCCCCGGCTTGCACATCACGCCCATCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
326 TCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* *
19468919 CTTAGGCATACAGAGTTCATT-CC---C-AA-TATA---AG---ATT----G-----GATC--A-
390 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* *
19468960 --GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC--CATATTGTGT-TT
455 CGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCAT-TT-T-TCTT
* ** * * ** *
19469020 TGTTGGGGCACCATTGCCGGAGC-TCAACCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGA
517 CGCCGGGGCACCATCGTCGGAGCATC-GTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
19469084 TCGGGGGGGCCGGGGAGGTGTGCGCACACGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
581 TC-GGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* ** * *
19469149 GACCCCCTATCCCTCATCATTCCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTATA
644 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
19469214 GGTTTGCTGCCAGTAGCCATTAAA--G--TGAAAT-GGGACAC-TTTTTCAAATGGTCACAAAAT
709 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * *
19469273 CTTGTGCACTTTGAATTTTTAGCTGAATTTTTTTGTGCATGCGAA-AAAAAGTACAAGGATCATG
774 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACG
* * * * * *
19469337 TCTACCAAGTTTGGTGCCAAAAATGCTTCGAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAT
838 TCTACCAAGTTTGGGGCCAAAACTCCTTCG-AAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
*
19469401 TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
**
19469466 GGACCAATT-TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGC
66 GGACC-ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* *
19469530 CTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTG
130 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * * *
19469595 CCCGCCCGCCCGTCTGCCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
195 CCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
19469660 TCAGATCAGACCGGACCGA-GGTT---------TG-T-GGCAGCACGCAG-GGGGGACCCGACCG
260 TAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
* ** * * * **
19469712 ATCCCTGGCTTGCGCATCTCATCCCTCTGGCCGACTAAGCGCCCGCATGCTCGTTTTGTGGGTTG
325 ATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
*
19469777 ACTTAGGCATACGGAGTTCATTCGCAGTCTAAG-AT-C---G----------G-C---G--C--A
389 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
*
19469819 ---GACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCA-CATTTTTCTTC
454 CCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTG-CAGCATTTTTCTTC
* * * * * * * *
19469880 GTCGGGGCACCATC-ACTTGAGCATCGCCGGAGAACCTGACCGACAGTATTGGGGTTTCGGCGAT
518 GCCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * * * ** * *
19469944 CGGGGGGGTCGGAGGCGTATGCGCACAT-AGGTGCGATGGGTTTTGGTACTTAGCCCCTATATTG
582 C-GGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
19470008 GCCCCTTGTCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
645 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
19470073 GTTTGTTGCGAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATC
710 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
19470138 TTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
775 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
19470203 -ACCAAGTTTGGGGCCAAAACTCCTACCGAAAAACTTTTAAAAAATCTCTAACCGTAAAAAG
840 TACCAAGTTTGGGGCCAAAACTCCT-TCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
*
19470264 TTTCAAAAATCATGAAAAATAGAAAACGAGTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
19470329 GGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATATGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * * * * *
19470394 TAAACCCACCTACTACCCTATCGATCCACGGCTAGCGCATCCCGTCCCTTTGGTCGGCATAGTG-
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * *
19470458 ---CCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGTCATACGGAGTCCATTCCCAGTCT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * ** *
19470520 AAGATCAGACTGGACCAAGGGTTGCGGCAGCAAGATCGGTAGCACATAGAGGGGGACCCGATCGA
261 AAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * * * *
19470585 TCCCCGGCTTGCGTATCCCACCCCTCTGGCCGGTTGAGCGCCCGTACACTCATTTCGTGGGTTGA
326 TCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* * *
19470650 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
390 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * *
19470715 CGGACCAAGGGTTGTGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGC
455 CGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCGC
* * *
19470779 CGGGGCACCA---TC---G--T--T-GAAGAACCTGACCGACGACATTGGGGTTCCGACAATCGG
520 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* *** *
19470833 GGTGGCCAGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACTCAACCTTTATATTGGCC
585 GG-GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
19470898 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTCGAGATTTTATAAGTT
648 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
19470963 TGCTGCCAGTAGCCA-AAAAGTGTCTGAAATGGGGACACATTTTTCAAAAGGTCACGAAATCTTG
713 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* ** *
19471027 TACACTTCAAGTTTTTAGCTGAATTTTTTTGAACATGCCAACAAAAATACAAGGATCATGTCTAC
778 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * * *
19471092 CAAGTTTTGGGCCAGAATTCCTTCCGAAAAACTTTTAAAAAA-CCCTGAACCGCATAAAG
843 CAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAG
* *
19471151 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
19471216 GGACCGTGGTATGAATTTACAAGCCATAAAAATGCCATTGGCACACAGAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * *
19471281 TAAACCCACCTACCACCCTATCGGTCCACGGCTTACGTATGCCGTCTCTCTGGCCGACGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * *
19471346 CCACCCACCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCGTACGGAGTTCATTCCTAGTCT
196 CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
**
19471411 AAGATCAAACCGGATCGAGGGTT
261 AAGATCGGACCGGATCGAGGGTT
19471434 ACAACAGCAC
Statistics
Matches: 17885, Mismatches: 3533, Indels: 3215
0.73 0.14 0.13
Matches are distributed among these distances:
837 35 0.00
839 5 0.00
840 1 0.00
841 11 0.00
842 4 0.00
843 5 0.00
844 137 0.01
845 176 0.01
846 1 0.00
847 196 0.01
848 6 0.00
849 5 0.00
850 2 0.00
851 1 0.00
852 3 0.00
854 1 0.00
855 1 0.00
856 7 0.00
857 2 0.00
858 110 0.01
859 282 0.02
860 25 0.00
861 12 0.00
862 12 0.00
863 314 0.02
864 638 0.04
865 28 0.00
866 8 0.00
867 8 0.00
868 471 0.03
869 229 0.01
870 225 0.01
871 180 0.01
872 371 0.02
873 134 0.01
874 57 0.00
875 297 0.02
876 183 0.01
877 761 0.04
878 18 0.00
879 331 0.02
880 350 0.02
881 164 0.01
882 67 0.00
883 58 0.00
884 10 0.00
885 216 0.01
886 1063 0.06
887 380 0.02
888 243 0.01
889 461 0.03
890 115 0.01
891 342 0.02
892 48 0.00
893 394 0.02
894 339 0.02
895 326 0.02
896 898 0.05
897 246 0.01
898 56 0.00
899 488 0.03
900 393 0.02
901 1152 0.06
902 1175 0.07
903 236 0.01
904 485 0.03
905 66 0.00
906 4 0.00
907 4 0.00
908 9 0.00
909 30 0.00
910 26 0.00
911 9 0.00
912 16 0.00
913 11 0.00
914 6 0.00
915 59 0.00
916 26 0.00
917 9 0.00
918 21 0.00
919 19 0.00
920 15 0.00
921 13 0.00
922 22 0.00
923 19 0.00
924 16 0.00
925 11 0.00
926 61 0.00
927 154 0.01
928 110 0.01
929 6 0.00
930 2 0.00
931 2 0.00
932 3 0.00
933 2 0.00
934 1 0.00
935 7 0.00
936 10 0.00
937 17 0.00
938 5 0.00
939 2 0.00
940 5 0.00
941 29 0.00
942 3 0.00
943 13 0.00
944 1 0.00
945 24 0.00
946 9 0.00
947 2 0.00
948 7 0.00
949 2 0.00
950 2 0.00
951 8 0.00
952 1 0.00
953 10 0.00
954 8 0.00
955 5 0.00
956 8 0.00
957 5 0.00
958 10 0.00
959 9 0.00
960 12 0.00
961 13 0.00
962 16 0.00
963 8 0.00
964 10 0.00
965 47 0.00
966 5 0.00
967 9 0.00
968 6 0.00
969 183 0.01
970 11 0.00
971 5 0.00
972 9 0.00
973 10 0.00
974 7 0.00
975 10 0.00
976 15 0.00
977 16 0.00
978 33 0.00
979 22 0.00
980 38 0.00
981 26 0.00
982 34 0.00
983 28 0.00
984 15 0.00
985 18 0.00
986 21 0.00
987 22 0.00
988 20 0.00
989 14 0.00
990 7 0.00
991 11 0.00
992 8 0.00
993 21 0.00
994 6 0.00
995 15 0.00
996 9 0.00
997 5 0.00
1000 4 0.00
1001 5 0.00
1002 5 0.00
1003 3 0.00
1004 4 0.00
1005 5 0.00
1006 14 0.00
1007 7 0.00
1008 11 0.00
1009 7 0.00
1010 17 0.00
1011 18 0.00
1012 18 0.00
1013 6 0.00
1014 13 0.00
1015 15 0.00
1016 27 0.00
1017 16 0.00
1018 20 0.00
1019 5 0.00
1020 3 0.00
1021 15 0.00
1022 28 0.00
1023 25 0.00
1024 368 0.02
1025 453 0.03
1026 407 0.02
1027 622 0.03
1028 451 0.03
1029 632 0.04
1030 520 0.03
1031 460 0.03
1032 533 0.03
1033 453 0.03
1034 317 0.02
1035 405 0.02
1036 430 0.02
1037 350 0.02
1038 345 0.02
1039 406 0.02
1040 409 0.02
1041 296 0.02
1042 387 0.02
1043 337 0.02
1044 294 0.02
1045 345 0.02
1046 323 0.02
1047 270 0.02
1048 517 0.03
1049 186 0.01
1050 348 0.02
1051 292 0.02
1052 368 0.02
1053 169 0.01
1054 243 0.01
1055 522 0.03
1056 209 0.01
1057 225 0.01
1058 226 0.01
1059 283 0.02
1060 378 0.02
1061 239 0.01
1062 180 0.01
1063 205 0.01
1064 126 0.01
1065 212 0.01
1066 235 0.01
1067 143 0.01
1068 245 0.01
1069 146 0.01
1070 86 0.00
1071 189 0.01
1072 329 0.02
1073 79 0.00
1074 70 0.00
1075 98 0.01
1076 95 0.01
1077 258 0.01
1078 102 0.01
1079 105 0.01
1080 148 0.01
1081 194 0.01
1082 107 0.01
1083 279 0.02
1084 46 0.00
1085 43 0.00
1086 17 0.00
1087 117 0.01
1088 76 0.00
1089 38 0.00
1090 31 0.00
1091 40 0.00
1092 28 0.00
1093 20 0.00
1094 23 0.00
1095 56 0.00
1096 60 0.00
1097 33 0.00
1098 34 0.00
1099 20 0.00
1100 10 0.00
1101 24 0.00
1102 33 0.00
1103 33 0.00
1104 35 0.00
1105 19 0.00
1106 20 0.00
1107 16 0.00
1108 16 0.00
1109 15 0.00
1110 19 0.00
1111 5 0.00
1112 13 0.00
1113 15 0.00
1114 16 0.00
1115 13 0.00
1116 1 0.00
1118 2 0.00
1119 2 0.00
1120 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
CCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
TCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
GGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCGCC
GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
Found at i:19451522 original size:26 final size:26
Alignment explanation
Indices: 19451492--19451547 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19451482 TGGATTGACT
*
19451492 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
19451518 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
19451544 TAAG
1 TAAG
19451548 ATCGGACTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:19452433 original size:26 final size:26
Alignment explanation
Indices: 19452386--19452435 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
19452376 TGACTTAGGC
*
19452386 ATACGGAGTTCATTCCTGGTCTAAAA
1 ATACGGAGTTCATTCCTAGTCTAAAA
19452412 ATACGGAGTTCATTGCC-AGTCTAA
1 ATACGGAGTTCATT-CCTAGTCTAA
19452436 GATCGGACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAAA
Found at i:19453305 original size:26 final size:26
Alignment explanation
Indices: 19453275--19453327 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19453265 GTTGACTTAG
19453275 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19453301 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19453327 G
1 G
19453328 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19454208 original size:26 final size:26
Alignment explanation
Indices: 19454178--19454228 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19454168 TTGACTTAGG
19454178 CATACGAAGTTCATTCCCAGTCTAAC
1 CATACGAAGTTCATTCCCAGTCTAAC
*
19454204 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
19454229 GATCGAACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAC
Found at i:19455807 original size:26 final size:26
Alignment explanation
Indices: 19455771--19455823 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19455761 ATTGACTTAG
19455771 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
* *
19455797 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
19455823 G
1 G
19455824 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:19456697 original size:26 final size:26
Alignment explanation
Indices: 19456661--19456713 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19456651 GTTGACTTAG
*
19456661 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19456687 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19456713 G
1 G
19456714 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:19456875 original size:26 final size:26
Alignment explanation
Indices: 19456846--19456898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19456836 GTTGACTTAG
19456846 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
* *
19456872 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
19456898 G
1 G
19456899 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:19456919 original size:185 final size:183
Alignment explanation
Indices: 19456502--19456927 Score: 600
Period size: 185 Copynumber: 2.3 Consensus size: 183
19456492 GTTGGCTTAG
* * *
19456502 GCATACAGAGTTCATCCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGAC-GAGGGTTGTAGCAGCAGGATCGACA
* * * * *
19456567 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTGGTCGGCTGAGCGC
64 GCACGCAGAGGGGGACCCAACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCAGCTGAGCCC
* * * * *
19456632 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
129 CCGCACGCTCATTCCATGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAA
* * * *
19456687 GCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGAACCAAGGGTTGTAGCTGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGA-CGAGGGTTGTAGCAGCAGGATCGACA
* * * *
19456752 GCACGGAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCAGCTGAGCCC
64 GCACGCAGAGGGGGACCCAACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCAGCTGAGCCC
19456817 CCGCACGCTCATTCCATGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAA
129 CCGCACGCTCATTCCATGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAA
*
19456872 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTAACAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGA-CGAGGGTTGTAGCAGCA
19456928 CATGCTGGGC
Statistics
Matches: 211, Mismatches: 27, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
184 1 0.00
185 208 0.99
186 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACGAGGGTTGTAGCAGCAGGATCGACAGC
ACGCAGAGGGGGACCCAACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCAGCTGAGCCCCC
GCACGCTCATTCCATGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAA
Found at i:19457453 original size:26 final size:26
Alignment explanation
Indices: 19457417--19457469 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19457407 GTTGACTTAG
19457417 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19457443 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19457469 G
1 G
19457470 ATCAGACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19459211 original size:26 final size:26
Alignment explanation
Indices: 19459181--19459233 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19459171 GTTGACTTAG
19459181 GCATATAG-AGTTCATTCCCAATCTAA
1 GCATA-AGAAGTTCATTCCCAATCTAA
* *
19459207 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAATCTAA
19459233 G
1 G
19459234 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAATCTAA
Found at i:19461424 original size:886 final size:887
Alignment explanation
Indices: 19460077--19471433 Score: 11208
Period size: 886 Copynumber: 12.8 Consensus size: 887
19460067 GTTGACTTAG
* * *
19460077 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAACGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
19460142 CTCAGGCATGGGCTGGTGCCGCATTTTTCTTCACCGAGACACGATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTT--TCG-G-C-C-A---CC-GAGCATCGCCGGAGA
* * * *
19460207 ACCTAACCGACGGCATTGGGGTTTCGATGATCGGGGGAGAC--GGTGGGTGTGCGCACATGATGT
121 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-G-CGGGGGGGGTGTGCGCACATGATGT
* *
19460270 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19460335 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19460399 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGATGAATTGTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* *
19460464 T-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAA
378 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCTTTCGAAA
* * * *
19460528 AAGTTTTAAAAAGTCTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
443 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
19460593 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGG
508 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19460658 CATTGGCATGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
573 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19460723 CGCAACCCGTCTCTCTGGCTAGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTC-CCGGTTGGCTT
638 CGCATCCCGTCTCTCTGGC-GGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTT
* * * * *
19460787 AAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAAGATCGG
702 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * **
19460852 CAGTACGCAGAGTGGGACCCGACCGATCCCCGGCTTGTGCGTCCCACCCTTCTGGCTAGCTGAGC
767 CAGCACGCAGAG-GGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGC
* * * * * * *
19460917 GCCTGCATGCTCGTTTCATGGGTTAATTTAGGGATATAGAGTTCATTCCCAGTCTAT
831 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** * * * ** **
19460974 GCATATAGAGTTCATTCCCAGTCTAGGATTGGACCGGACCAAGGGTTGTGGCAGTGCATGCCAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
19461039 CTTGGGCTTCTATTGGTGCCGCATTTTTC-TTC-G-C-CCGAGCATCGTCGGAGAACTTGACCGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCGGCCACCGAGCATCGCCGGAGAACCTGACCGA
* * * *
19461100 CGGCATTGCGGTTCCGGCGATCGGGCGGGCTGGGGGGGGAGTGCACACATGATGTGCGATGGGTG
131 CGGCATTGGGGTTCCGACGATCGGG-GGGC-GGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
19461165 CTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCCCACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
19461230 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
19461295 TTTTTCAAATGGTCACAAAATCTTGTACAGTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
19461360 ACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAAAC-CATTTCGAAAAAATTTTAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTC-TTTCGAAAAAATTTTAAA
* *
19461424 AAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
453 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * ** *
19461489 ACTTCATGTGAAGGCTTCAA-GGAACATTGTATGAATTTACAAGCCATAAAAATCTCTTTGGCAT
518 ACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * * * *
19461553 GCAAAAATATGAAGATTTGCCTAAACCCACCTAGCACCCTATTGGTCTACGGCTCGCGCATCCCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
19461618 TCTCTCTGGCCGGCGTAGT----GCCC-ACC-CAT--TCGTTTCGTCAGTTAGCTTAGGCATATG
647 TCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* ** * *
19461675 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGGTAGCACGCA
711 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
** * * * *
19461740 GAGGGGCACCCGGTCGATCCCCGGCTTGCACGTCCCGCCCCTCTGGCCGGCTGAGCTCCCGCACG
776 GAGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
19461805 CTCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCTAGTCTAA
840 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
19461853 GCATACGGAGTTCATTCCCAGTCTACGATCGGACCGGACCAAGGGTTGTGGCTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
19461918 TTCGGGCATGTGCGGGTGCCGCATTTTTC-TTC-G--TCGGAGCATCGTCGGAGAACCTGACTGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCGGCCACCGAGCATCGCCGGAGAACCTGACCGA
** * * *
19461979 CGGCATTGGGGTTCCGACGATCGGGGGG-GCCAGGGCGTGTGCGCACATGATGAGTGATGGGTGC
131 CGGCATTGGGGTTCCGACGATCGGGGGGCG-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
19462043 TGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
19462108 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGGAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
19462173 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
19462238 AAAAAATAAAAGGATCACGTATACCAAGTTTGGGGCC-AAAACTCCTTCTGAAAAAATTTTAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCTTTC-GAAAAAATTTTAAAA
* * * *
19462302 AATCTCGAATCGCAACAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
454 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
19462367 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGC
519 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
19462432 AGAAATAAGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCGCATCCCGTC
584 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
19462497 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGTTCATTTCGTCGATTGCCATAGGCATA
649 TCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCCTG--C--TCGTTTCGTCGGTTGGCTTAGGCATA
** * * *
19462562 CGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCTAGGGTTACGGTAGCAGGATCGGCAGCACG
709 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * * * ** *
19462627 CAGATGGGGACCCGGCCTATCACTGGCTTACACATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCA
774 CAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
* *
19462692 AGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
19462742 G-AT-C--AG---------A--C------CGGACC-G---AA-GGTTGCAGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19462781 CTCAGGCATATGTTGATGCCGCATTTTTCTTTGCCAGTGCACCAACGTCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTT--C-G-G--CC-AC--C-GAGCATCGCCGGAGA
* * *
19462846 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGG-GTCGAGGGGTGTGCGCACATGATGTG
121 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCG-GGGGGGGTGTGCGCACATGATGTG
* * * * * *
19462910 CAATGGGTGCGGGTACTTGGCCCTTCTATTGGACCCCTATCCCTCATCAAACCTCAAGAACTAAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19462975 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTTCTGCTAGTAGCAATTAAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
19463040 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19463104 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-GAAACTCCTTTTGAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACT-CTTTCGAAAA
*
19463168 AATTTT-AAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
444 AATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* ** * *
19463231 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGATGATTATATGAATTTACATGCCATAAAAATGG
508 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19463296 CATTGGTAGGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
573 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19463361 CGCATCCCGTCTCTCTGGCTGGTGTAGTGCCTGCTGGTCCACCCGTCTGCTCGTTTCGTCGGTTG
638 CGCATCCCGTCTCTCTGGC-GGCGTAGTGCC--C--GCCCGCCCGCCTGCTCGTTTCGTCGGTTG
* * ** * * * ** *
19463426 GCTTAGGCATACAGAGTTCATTCCCTGTCTAAGATTGGATCAGACTGAGGGTTATGGTAGCAGGA
698 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
** * * * * * *
19463491 TCGATAGGACGCAGAGGGGGCCCGACCGATCCTCGGCTTGTGCATCCC-GCCCTTTGGCCGGCTG
763 TCGGCAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* * * * *
19463555 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATCCGGAGTTCATTCCTAGTCTAA
828 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * ** * ** *
19463615 GCATATGGAGTTCATTCCCAATCTATGATCGGATCGGACGGAGGGTTACGGCAGCACATTTTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * *
19463680 CTCGGACATGTGCT-GTGCTGCATTTTTC-TTCATCGAGGCG-CCATCACCGGAGAACCTGACCG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCGGCCA-CCGAGCATCGCCGGAGAACCTGACCG
* * * *
19463742 ATGGCATTGGGGTTCCGACGATCGGGGGGC-CGAGGGGTGTGCGCACATGATGTGTGATGGGTGC
130 ACGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
19463806 TGGTAC-TGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
19463870 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
19463935 TTTTCAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** * *
19464000 TAAAAATACAAGGATCACATCTAAAAAGTTAGGGGCCAAAACACCCTCTGAGTTTTTAGCTAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-A--CTC------TTT--CGAAAA
** *
19464065 GTTTTTGTGCATGCCAACAAAAATACAAGGAACACGTCCACAAAGTTTGGGGCCAAAACTCCTTC
444 ---AAT-T---T-----------TA-AA--AA-A--TCC-C---G-----------AA--CCGT-
* *
19464130 CAAAAAAATTTTGAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
467 ---AAAAAGTTTCAAAAA--TC--A---T-----G-------AA-----A--AATAGAAAACGAG
* ** * *
19464195 TCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGATGATTATATGAATTTACATGCCATAAA
503 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
19464260 AATGGCATTGGTAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAG
568 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** * *
19464325 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCAACCCGCTCATTTCGTCGGTT
633 GCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTT
* ** * * ** *
19464390 GGCTTAGGCATACGGA--TC-TAT---AG-C--ACA-CAGAGGGGACCCAGTCGATCCCCGGCTT
697 GGCTTAGGCATACGGAGTTCAT-TCCCAGTCTAAGATCAGACCGGACCGAG--GGT-TGCGGC-A
* * * * * * * * * * * **** * *
19464445 GCA-CATC-CCACCCCTCTG-GCTGG--CTGAGCG---CCC-AC--ACGC-T-CGTTTCGT-GGG
757 GCAGGATCGGCAGCACGCAGAG-GGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGG
** * * ** ** **** * * * *
19464496 TTGACTTAG-G--CATACG-GAG-TTCAT-TCCCGTC-TAAGCATACGGAGTTCATTGCCAGTCT
821 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
19464554 AA
886 AA
* *
19464556 G-AT-C--AG---------A--C------CGGACC-G----AGGGATACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19464595 CTCGAGCATGTGCTGGTGCCACATTTCTCTTCGTCGGGGCACCATCGCCG-GACATCGTCGAAGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTT--TC--GG--CCA---CCGAG-CATCGCCGGAGA
* * ** *
19464659 ACCTGACCGACGGCATTTGGGTTCCGACGATCAGGGGGCCAGGGGGGTGTGCACACATGATGTGC
121 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGGTGTGCGCACATGATGTGC
*
19464724 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
186 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19464789 CCCCCTTAAATAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTG--AT
251 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAAT
* *
19464852 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCCGAATTTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * *
19464917 TGCATGCCAA-AAAAAGTATGAGGATCACATCTACCATGTTTGGGGCCAAAAAAC-C-TTCAAAA
380 TGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAAACTCTTTC-GAA
* *
19464979 AAAATTTTAAAAAATCCCAAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
442 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
19465044 CTTGCCATGAAACTTCACGTGACGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
507 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
19465109 GCATTGGCACGTAGAAATATGAAGATGTGCCCAAACCGACCTACCACCCTATCGATCCACGGCTT
572 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19465174 GCGCATCCCGTCTATCTGGCCGACGTAGT----GCCCG--C-CC-GCTCGTTTTGTCGGTTGGCT
637 GCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
* * ** * * *
19465231 TAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGTAGTAGGATCG
701 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
** * * * * ** * * **
19465296 ATAGTACGTAGAAGGGGACCTGGCTAATCCCCGACTTTCGCATCCTGCCCCTCTGGCCGGCTGAG
766 GCAGCACGCAG-AGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * *
19465361 CGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTTA
830 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * **
19465419 GCATACGGAGTTCATTCCCAGACTATGATCAGATCGGACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* *
19465484 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTT--TC-GG---CCA-C--C-GAGCATCGCCGGAGA
* * * * *
19465549 ACCTCACCGGCGACATTAGGGTTCCGACGATCGAGGGGGCCGGAGGGGGGTGTGCGCACAAGATG
121 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGG-CGG-GGGGGGTGTGCGCACATGATG
* *
19465614 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCAT-AAAGCCTCGAGAACT
183 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CCTCGAGAACT
*
19465678 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-
247 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19465742 GATGGGGACAC---TTT----T--T-------TC----A-A-----A---TTTAGCTTAATTTTT
312 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * **
19465778 TTGTGCATGCCAAAAAAAATGCAAGGATCATGTCTACCAAGTTTACGGCC-AAAACTCCTTTCGA
377 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACT-CTTTCGA
* * * * * *
19465842 AAAAATTTTAAAAAATCTCGATCC-AAAAAAGGTTTCGAAAATCCTGAAAAATAGAAAATGAGTC
441 AAAAATTTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
19465906 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAA
505 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
19465971 TGGCATTGGCATGTAGAAATTTAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGT
570 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * ** * * *
19466036 TTACGTATCCTGTCTCTCTGACCGATGTAGTGCCCGCCCGTCCGCCCGCACGCCCGCTCATTTTG
635 TTGCGCATCCCGTCTCTCTG-GCGGCGTAGTGCCCG--C--CCG--C-C-CGCCTGCTCGTTTCG
* * * ** * * *
19466101 TCGGTAGGCTTAGGCATACGAAGTTCATTCCCAGTCTAATATTGGACTGGACCGATGGTTGCGAC
691 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGC
* ***
19466166 AGTAGGATCGGCAGCACGCAGAGGGG----GA-CG-----CGGC-T--G-ATCCC-CAAGT-T--
756 AGCAGGATCGGCAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGG
* *
19466213 ---G-T----------ACGTTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCT
821 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
19466264 AA
886 AA
* * * * *
19466266 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19466331 CTCGAGCATGTGCTGGTGTCGCGTTTTTCTTCATCGGGGCACCATTACCAGTGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTT--TC--GG--CC---ACC-GAGCATCGCCGGAGA
* * *
19466396 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGG-GCCGGGGGGTGTGCGCACATGATGTG
121 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCG-GGGGGGGTGTGCGCACATGATGTG
* * * * * *** * *
19466460 TGATGGGTACCGCTTCTTGGTAGTTATATTGGCCCTCTATCTCTCATCAAACCTCGAGAACTCAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19466525 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19466590 GGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19466655 TGCATGCCAA-AAAAATACAAGGATCAAGTCTACCAAGTTTGAGGCC-AAAACTCCTTTCGAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACT-CTTTCGAAAA
* *
19466718 AATTTT-AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
444 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19466782 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCAGTGTATGAATTTACAAGCCATAAAAATGGC
509 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19466847 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
574 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
19466912 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCC-CTCCGCCCGCCCGTCCGCTGGTTTCATCGGTTG
639 GCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGC-CCGCCCG-CC-T--GCTCGTTTCGTCGGTTG
* * * * * ** * * * *
19466976 GCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGATCAGATTGAGGGTTGCTGTAGTAGGG
698 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * **
19467041 TCAGCAGCACGTAGAGGGGAACCCGGCCGAT-CCCGAACTTGCGCATCCCACCCCTCTGGCCAAC
763 TCGGCAGCACGCAGAGGGG-ACCCGACCGATCCCCG-GCTTGCGCATCCCACCCCTCTGGCCGGC
* * * * *
19467105 TGAGCAG-CTGCACGCTCGTTTCGTGGGTTGACTTACGCATACATAGTTCATTTCCAGTCTAA
826 TGAGC-GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * **
19467167 GCATACGGAGTTCATTCCCAGTCTGAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
** * *
19467232 CTCGGGCATGTGCTGGTTTCACATTTTTCTTCGCCGGGGCACCAACGCCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTT--TC--GG--CC-A--CCG-AGCATCGCCGGAGA
* **
19467297 ACCTGACCGATGGCATTGGGGTTCCGACGA-C------C-GGGGGGGTGTATGCACATGATGTGC
121 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGGTGTGCGCACATGATGTGC
*
19467354 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
186 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
19467419 CCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATA
251 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19467484 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
316 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** *
19467549 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTTTGGCC-AAAACTCCTTCTGAAAAA
381 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCTTTC-GAAAAA
* * *
19467613 ATTTTAAAAAATCCCCAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
445 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19467678 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAATATGGCA
510 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
19467743 TTGGCAGGCAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATACACAGCTTGCG
575 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
19467808 CATCCTGTCTCTCTGGCCGACGTCGTGCCCGCCCGCCCGCCCGCCGCCCGCACGCTCGTTTCATC
640 CATCCCGTCTCTCTGG-CGGCGTAGT----GCCCGCCCG--C-CCG--C-C-TGCTCGTTTCGTC
* * * * * * ** **
19467873 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTATAAGATCGGATCGAACCGACGGTTTTGATAG
693 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* * * ** * * *
19467938 CAGGATCAGCAGCACGTAGAGGGTGACCTGGTCGATCCCCGGCTTGCACATCCC-GCCCTCTGGT
758 CAGGATCGGCAGCACGCAGAGGG-GACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGC
* * *
19468002 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTA
822 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
19468067 A
887 A
* * *
19468068 G----C--A--T-A---CCAGT-TAAGATCGGACC-AATCCGAGGGTTGCGGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCAAGGGTTGCGGCAGCACATGCTGG
* * *
19468119 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCTGACCATCGCTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTT--TC--GG---C--CACC-GAGCATCGCCGGAG
* ** * * * * *
19468184 AACCTGACTGGTGGTATTGGGGTTCCCACGATCGGGGGGGCCGGGGGGGTATGCGCACAT-AGGT
120 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCGGGGGGGGTGTGCGCACATGATGT
* * *
19468248 GCGATGGGTTCTGGTAATTGGACCC-TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
184 GCGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
19468312 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19468377 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTT
313 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
19468442 TTTGCATGCCAACAAAAATACCAGGATCATGTCTACCAAGTTTGGGGAC-AAAACTCCATCCAAA
378 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACT-CTTTCGAA
* * *
19468506 AAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
442 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
19468571 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATCGTATGAATTTAGAAGCCATAAAAATG
507 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
19468636 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTT
572 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
19468701 GCGCATCCCATCTCTCTGGCCGACGTAGT----GCCTGCCCGCCTGCTCGTCTCGTCGGTTGGCT
637 GCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
* * * * * * * * *
19468762 TAGGCATACAGAGTACATTTCCAGTCTAAGATTAGACTGGACCAAGGGTTGCAGCAACAGGATTG
701 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * * *
19468827 GCAGCACACAGAGGGGGACCCCACCGATCCCCGGCTTGCACATCACGCCCATCTGGCTGGCTGAG
766 GCAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
19468892 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CC---C-AA
830 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
19468945 -TATA---AG---ATT----G-----GATC--A---GACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
** * * *
19468989 CTCGGGCATGTGCTGGTGCCATATTGTGTTTTGTTGGGGCACCATTGCCGGAGC-TCAACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATT-T-TTCT-TT-CGG--CCA---CC-GAGCATC-GCCGGAG
* * * *
19469053 AACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGGTGTGCGCACACGATGT
120 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCGGGGGGGGTGTGCGCACATGATGT
* * **
19469118 GTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCATTCCTCGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19469183 CAACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA--G--TGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19469244 T-GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAATTTTTAGCTGAATTTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19469307 GTGCATGCGAA-AAAAAGTACAAGGATCATGTCTACCAAGTTTGGTGCCAAAAA-TGC-TTCGAA
379 GTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACT-CTTTCG-A
* *
19469369 AAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTCGAAAATCATGAAAAATAGAAAACGAGTCG
441 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
19469434 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATT-TATGAATTTACAAGCCATAAAAA
506 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-ATTGTATGAATTTACAAGCCATAAAAA
*** *
19469498 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGC
570 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
19469563 TTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGTCTGCCCCCTCGTTTCGTCGG
635 TTGCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCCTG----CTCGTTTCGTCGG
* *
19469628 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTCAGATCAGACCGGACCGA-GGTT---------
695 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
* * * * * *
19469683 TG-T-GGCAGCACGCAGGGGGGACCCGACCGATCCCTGGCTTGCGCATCTCATCCCTCTGGCCGA
760 GGATCGGCAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGG
* * ** * *
19469746 CTAAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAA
825 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
19469809 G-AT-C-G-G--------C-G-C----A---GACC-G----AGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* *
19469848 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACTTGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTT--TC--GG--CCA-C-C--GAGCATCGCCGGAGA
* * * * * * * *
19469913 ACCTGACCGACAGTATTGGGGTTTCGGCGATCGGGGGG-GTCGGAGGCGTATGCGCACAT-AGGT
121 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCG--GGGGGGGTGTGCGCACATGATGT
** * * * * *
19469976 GCGATGGGTTTTGGTACTTAGCCCCTATATTGGCCCCTTGTCCCTCATCAAACCTTGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19470041 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCGAGTAGCAATTAAAGTGTCTGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19470106 TGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
19470171 GTGCATGCCAACAAAAATACAAGGATCACATC-ACCAAGTTTGGGGCC-AAAACTCCTACCGAAA
379 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACT-CTTTCGAAA
* * * *
19470234 AACTTTTAAAAAATCTCTAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTGGTC
443 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19470299 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGG
508 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
19470364 CATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACTACCCTATCGATCCACGGCTAG
573 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19470429 CGCATCCCGTCCCTTTGGTCGGCATAGTGCCCGCCCGCCCGTCC-GCTCGTTTCGTCGGTTGGCT
638 CGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCG-CCTGCTCGTTTCGTCGGTTGGCT
* * * * *
19470493 TAGTCATACGGAGTCCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGCAGCAAGATCG
701 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* ** * * *
19470558 GTAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCCCACCCCTCTGGCCGGTTGAG
766 GCAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * *
19470623 CGCCCGTACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
830 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
19470681 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* *** * ** *
19470745 CTCGGGCATGTGCTGGTGCCGCATTTCTC-TTC-GCCGGGGCACCATCGTTGAAGAACCTGACCG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCGGCCACCG-AGCATCGCCGGAGAACCTGACCG
* * ** *
19470808 ACGACATTGGGGTTCCGACAATCGGGGTGGCCAGGGGGGTGTGCGCACATGATTTGCGATGGGTG
130 ACGGCATTGGGGTTCCGACGATCGGGG-GGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*** * *
19470873 CTGGTACTCAACCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTG
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * *
19470938 AAGAGCATTCGAGATTTTATAAGTTTGCTGCCAGTAGCCA-AAAAGTGTCTGAAATGGGGACACA
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * **
19471002 TTTTTCAAAAGGTCACGAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGAACATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * *
19471067 ACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCC-AGAATTCCTTCCGAAAAACTTTTAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACT-CTTTCGAAAAAATTTTAAA
* * *
19471131 AAA-CCCTGAACCGCATAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
453 AAATCCC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
19471195 AACTTCATGTGAAGGCTTAAGGGACCGTGGTATGAATTTACAAGCCATAAAAATGCCATTGGCAC
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
19471260 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTACGTATGCCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
19471325 TCTCTCTGGCCGACGTAGTGCCCACCCACCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCG
647 TCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCG-CC-T--GCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
19471390 TACGGAGTTCATTCCTAGTCTAAGATCAAACCGGATCGAGGGTT
707 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
19471434 ACAACAGCAC
Statistics
Matches: 8807, Mismatches: 1151, Indels: 1010
0.80 0.10 0.09
Matches are distributed among these distances:
837 29 0.00
838 2 0.00
839 3 0.00
840 1 0.00
841 5 0.00
842 4 0.00
843 6 0.00
844 139 0.02
845 178 0.02
846 14 0.00
847 185 0.02
848 6 0.00
849 1 0.00
850 4 0.00
851 2 0.00
852 3 0.00
853 3 0.00
854 2 0.00
855 3 0.00
856 8 0.00
857 6 0.00
858 117 0.01
859 253 0.03
860 19 0.00
861 9 0.00
862 23 0.00
863 326 0.04
864 637 0.07
865 35 0.00
866 12 0.00
867 5 0.00
868 106 0.01
869 124 0.01
870 115 0.01
871 30 0.00
872 348 0.04
873 133 0.02
874 61 0.01
875 283 0.03
876 129 0.01
877 660 0.07
878 19 0.00
879 313 0.04
880 80 0.01
881 106 0.01
882 71 0.01
883 51 0.01
884 12 0.00
885 210 0.02
886 666 0.08
887 394 0.04
888 122 0.01
889 244 0.03
890 51 0.01
891 72 0.01
892 11 0.00
893 361 0.04
894 60 0.01
895 210 0.02
896 445 0.05
897 133 0.02
898 35 0.00
899 34 0.00
900 5 0.00
901 250 0.03
902 109 0.01
903 7 0.00
904 2 0.00
909 1 0.00
912 1 0.00
913 1 0.00
915 34 0.00
916 15 0.00
917 5 0.00
919 5 0.00
920 6 0.00
922 3 0.00
923 3 0.00
924 1 0.00
925 4 0.00
926 51 0.01
927 134 0.02
928 107 0.01
929 2 0.00
937 4 0.00
939 2 0.00
940 3 0.00
941 26 0.00
942 2 0.00
943 17 0.00
944 1 0.00
945 7 0.00
947 1 0.00
948 8 0.00
949 3 0.00
950 3 0.00
952 1 0.00
953 2 0.00
955 1 0.00
956 12 0.00
957 3 0.00
958 8 0.00
959 6 0.00
960 4 0.00
962 3 0.00
963 3 0.00
965 36 0.00
967 2 0.00
969 173 0.02
970 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCGGCCACCGAGCATCGCCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCTTTCGAAAAAATTTTAAAAAA
TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
GACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:19464110 original size:82 final size:82
Alignment explanation
Indices: 19463968--19464123 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 82
19463958 GTACAATTCA
* ** * * *
19463968 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTAAAAAGTTAGG
1 AGTTTTTAGCTAAAAGTTTTTGTGCATGCCAACAAAAATACAAGGAACACATCCAAAAAGTTAGG
19464033 GGCCAAAACACCCTCTG
66 GGCCAAAACACCCTCTG
* * *
19464050 AGTTTTTAGCTAAAAGTTTTTGTGCATGCCAACAAAAATACAAGGAACACGTCCACAAAGTTTGG
1 AGTTTTTAGCTAAAAGTTTTTGTGCATGCCAACAAAAATACAAGGAACACATCCAAAAAGTTAGG
19464115 GGCCAAAAC
66 GGCCAAAAC
19464124 TCCTTCCAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
82 65 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (82 bp):
AGTTTTTAGCTAAAAGTTTTTGTGCATGCCAACAAAAATACAAGGAACACATCCAAAAAGTTAGG
GGCCAAAACACCCTCTG
Found at i:19464539 original size:25 final size:26
Alignment explanation
Indices: 19464505--19464556 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19464495 GTTGACTTAG
*
19464505 GCATACGGAGTTCATT-CCCGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
19464530 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
19464556 G
1 G
19464557 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:19465428 original size:26 final size:27
Alignment explanation
Indices: 19465388--19465439 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 27
19465378 CATGGGTTGA
19465388 CTTAGGCATACGGAGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATTCCCAGT
19465415 CTTA-GCATACGGAGTTCATTCCCAG
1 CTTAGGCATACGGAGTTCATTCCCAG
19465440 ACTATGATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATTCCCAGT
Found at i:19466270 original size:26 final size:26
Alignment explanation
Indices: 19466240--19466292 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19466230 GTTGACTTAG
*
19466240 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19466266 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19466292 G
1 G
19466293 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19468473 original size:896 final size:886
Alignment explanation
Indices: 19457247--19471433 Score: 13863
Period size: 877 Copynumber: 16.1 Consensus size: 886
19457237 TCCTTTCGTG
* * ** **
19457247 GGTTGACTTAGGCATACGGAGTACATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTT-TTGTAG
* * * ** **
19457312 CAGGATC-GACAACACGCAGCGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGTTCCTCTGG
64 CAGGATCAG-CAGCACGTAG-AGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGG
* * * *
19457376 CCAGCTGAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
126 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
* * * * * *
19457441 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAAACCGAGGGTTGTGGTAGCACATGCTA
191 AAG----C--A--T-A---CCAGT-TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTG
** * * * * * *
19457506 GGCTCAAGCATGTGCTGGTGCCGCACTTTTCTTCG-C--CG-A--GTTA-C---CATCGCCAGAG
243 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAGCATCGCCGGAG
* * * * * *
19457561 AACCTGACCGACAGCGTTGGGGTTCCGGCGATC-GGGAGGCCAGGTGGGGTGTGCGCACATGATG
308 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTATGCGCACATGATG
* * *
19457625 TGTGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACT
372 TGCGATGGGTGCTGGTACTTGGACCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
19457689 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
436 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
19457754 AATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTAAATTTTT
501 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
19457819 TTATGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAAATCCTTCCGAA
566 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * ** ** *
19457884 AAAATTTAAAAAAATCTCGATCCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
631 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
** *
19457949 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTTATAAAAATC
696 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
19458014 TCATTGGTATGCAGAAATATGAAGATGTGCTTAAACCCACCTACCGCCCTATCGATCCAAC-GCT
761 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGCT
* * * * * *
19458078 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGTCCGCCCGCCCACCCGCCCACTCGTTTCGTC
825 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* * * * ** *
19458140 GGTTGGCTTAGGCATACAGTGTTCATTCCCAGTCTAAGATCAGACCGCACCAAGGGTTGCGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTT-TTGTAG
* * * * *
19458205 CAGGATCGGCAGCACGCAGAAGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTCGC
64 CAGGATCAGCAGCACGTAG-AGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGC
* * * * * * *
19458270 CGGTTGAGCGTCGGTACGCTCGTTTCATGGGTTGACTTAGGCAAACGGAGTTCATT-CC---C--
127 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * * *
19458329 AG--T----G-TAAGAT-GGACCGGACCGAGGGTTACGGCAGCACATGCTGTGCTCGGGCATGTA
192 AGCATACCAGTTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * **
19458386 CTGGTGCCACATTTTTCTTCATCAGGGCACCATCGCTGGAGCATCATCGGAGAACCTGACCGACG
257 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAC-CGAGCATCGCCGGAGAACCTGACCGACG
* * * * * * *
19458451 GTAATGGGGTTACGGCGATC-GAGGGGCCGGGGGGGT-T-CACACATGATGTGCGATGGGTGCTA
321 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTG
*
19458513 GTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAA
386 GTACTTGGACCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
19458577 GAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
450 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
19458642 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAAC
515 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
19458707 AAAAATATAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTGAAAAA
580 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
19458772 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
645 TCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
19458837 TCACGTGAAGGCTTAAGGCACCATTGTATGAATATACAAGCCATAAAAATGGCATTGGCACACAA
710 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * * *
19458902 AAATATGAAGATGTCCCTAAACCCACCAACCACCCTATCAATCCACGGCTTCCGCATCTCGTCTC
775 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
19458967 TCTGGCCGACGTAGTGCCCGCCCGCCCG--C--CCGCTCGTTTCGTC
840 TCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* ** * * * ** *
19459010 GGTTGGCTTAGGCATACAGAGTTCATTCTTAGTCTAAGATCGGACCAGAATCGAGGGTTACGGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-C-GGACCGAGGGTT-TTGTA
* * * *
19459075 ACAGGATC-GCCAACACGCAGAGGGGGACCC-AGTCGATCCCCGGCTTGCGCATCCCACCCCTCT
63 GCAGGATCAG-CAGCACGTAGA-GGGGACCCGA-CCGATCCCCGGCTTGCGCATCCC-CCCCTCT
* * * * * *
19459138 GGCAGGCCGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAAT
124 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
** * *
19459203 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAAAGAGGGTTGCGGCAGCATATAC
189 CTAAG----C--A--T-A---CCAGT-TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGC
* ** * * * *
19459268 TGGGCTCGGGCATGTGCTGCTGCTGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCA
241 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-ACCGAGCATCGCCG
* * * * * *
19459333 GAGAACCTGATCGGCGGCATTGGGGTTCCGAAGATCGGAGGGGCCGGGGGGGTGTGCGCAAATGA
305 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGA
* * *
19459398 TGTGCAATGGGTGCTGGTACTTGAACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
370 TGTGCGATGGGTGCTGGTACTTGGACCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
19459463 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
435 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* ** **
19459528 AAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTTAAGTTTTTAGCTGAAAGTT
500 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
19459593 TTTGTGCATGCCAAAAAAAATATAAGGAACACGTCTACAAAGTTTGGGGCCAAAATTCCTTCC-A
565 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
19459657 AAAAATTTTTGAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
630 AAAAA-TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
19459722 GTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
694 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
19459787 TGGCATTGGTAGGCAGAAAGATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGC
759 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
19459852 TTGCGCATCCCGTCTCTCTGACCGGCGTAGT----GCCTG-CC-CAC--CCGCTCATTTCGTC
824 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* ** ** *
19459907 GGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATAAGACCGAGGGTTGTGATAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTTTG-TAG
* * * * ** * *
19459972 AAGGATC-GACAGCATGCAGAAAGGGACCCGGTCGATCCCCAGCTTGCGCATCTCGCCCCTCTGG
64 CAGGATCAG-CAGCACGTAG-AGGGGACCCGACCGATCCCCGGCTTGCGCATC-CCCCCCTCTGG
* * *
19460036 CCGGTTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC---C-
126 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
* * *
19460096 -AG--T--C---TAAGATCGGACCAGAACGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGG
191 AAGCATACCAGTTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* ** * * * * * *
19460153 GCTGGTGCCGCATTTTTCTTCACCGAGACACGATCGCCGGAGCATCACCGGAGAACCTAACCGAC
256 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACC-GAGCATCGCCGGAGAACCTGACCGAC
* * * * * * *
19460218 GGCATTGGGGTTTCGATGATCGGGGGAGAC-GGTGGGTGTGCGCACATGATGTGTGATGGGTGCT
320 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCT
*
19460282 GGTACTTGG-CCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACA-CCCCTTAA
385 GGTACTTGGACCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
19460345 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
449 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
19460410 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGATGAATTGTTTTT-TGCATGCCA
514 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCA
* * * *
19460474 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAAAAGTTTTAAAA
578 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * *
19460539 AGTCTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
643 AATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
19460604 CTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGC
708 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * *
19460669 AGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAACCCGTC
773 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
19460734 TCTCTGG-CTAGCGTAGTGCCCGCCCGCCCG-CC-T--GCTCGTTTC-CC
838 TCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* * * ** *
19460778 GGTTGGCTTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTT-TTGTAG
* * * * * * *
19460843 CAAGATCGGCAGTACGCAGAGTGGGACCCGACCGATCCCCGGCTTGTGCGTCCCACCCTTCTGGC
64 CAGGATCAGCAGCACGTAGAG-GGGACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGC
** * * * * * * *
19460908 TAGCTGAGCGCCTGCATGCTCGTTTCATGGGTTAATTTAGGGATATAGAGTTCATTCCCAGTCTA
127 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG----
* * * * * * ** **
19460973 TGCATATAGAGTTCATTCCCAGTCTAGGATTGGACCGGACCAAGGGTTGTGGCAGTGCATGCCAG
188 T-C---TA-AG--CA-TACCAGT-TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** * *
19461038 GCTTGGGCTTCTATTGGTGCCGCATTTTTC-T--TC---G------C-CCGAGCATCGTCGGAGA
244 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAGCATCGCCGGAGA
* * * * * * *
19461090 ACTTGACCGACGGCATTGCGGTTCCGGCGATCGGGCGGGCTGGGGGGGGAGTGCACACATGATGT
309 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTA-TGCGCACATGATGT
*
19461155 GCGATGGGTGCTGGTACTTGG-CCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
373 GCGATGGGTGCTGGTACTTGGACCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19461219 CCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
437 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19461284 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGATTTTTTAGCTGAATTTTTT
502 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19461349 TGTGCATGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAAAC-CATTTCGAA
567 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAA
19461413 AAAATTTTAAAAAAT-CCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
631 AAAATTTTAAAAAATCCCA-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
19461477 TCTTGCCATGAAACTTCATGTGAAGGCTTCAA-GGAACATTGTATGAATTTACAAGCCATAAAAA
695 TCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * * * * * * *
19461541 TCTCTTTGGCATGCAAAAATATGAAGATTTGCCTAAACCCACCTAGCACCCTATTGGTCTACGGC
759 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
19461606 TCGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCACCCAT----TCGTTTCGTC
824 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* * * * * *
19461657 AGTTAGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTT-TTGTAG
* * * * ** * *
19461722 CAAGATCGGTAGCACGCAGAGGGGCACCCGGTCGATCCCCGGCTTGCACGTCCCGCCCCTCTGGC
64 CAGGATCAGCAGCACGTAGAGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGC
* * * *
19461787 CGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCTAGTCTA
127 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * * * *
19461852 AGCATACGGAGTTCATTCCCAGTCTACGATCGGACCGGACCAAGGGTTGTGGCTGCACATGCTGG
192 AG----C--A--T-A---CCAGT-TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
19461917 GTTCGGGCATGTGCGGGTGCCGCATTTTTCTTCGTC---G----------GAGCATCGTCGGAGA
244 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAGCATCGCCGGAGA
* * * * * *
19461969 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGCGTGTGCGCACATGATGAG
309 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTG
* *
19462033 TGATGGGTGCTGGAACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
374 CGATGGGTGCTGGTACTTGGACCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19462097 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGGAA
438 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19462162 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
503 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
19462227 GTACATGCCAAAAAAAATAAAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
568 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
19462292 AATTTTAAAAAATCTCGAATCGCAACAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
633 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19462357 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGC
698 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
19462422 ATTGGCATGCAGAAATAAGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGC
763 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
19462487 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGTTCATTTCGTC
828 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* * * ** * **
19462546 GATTGCCATAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCTAGGGTTACGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTT-TTGTAG
* * * * * * * * *
19462611 CAGGATCGGCAGCACGCAGATGGGGACCCGGCCTATCACTGGCTTACACATCCTGCCCCTCTGGC
64 CAGGATCAGCAGCACGTAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCC-CCCCCTCTGGC
* * * *
19462676 CGGCTGAGTGCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
127 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * * * *
19462741 AG-AT--C-----AGACCGGACC-GA---A-GGTTGCAGCAACACATGCTGGGCTCAGGCATATG
192 AGCATACCAGTTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * * * * * * * *
19462793 TTGATGCCGCATTTTTCTTTGCCAGTGCACCAACGTCGGAGCATCGCTGGAGAACCTGACCGACG
257 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-ACCGAGCATCGCCGGAGAACCTGACCGACG
* * * * * *
19462858 GCATTGGGGTTCCGATGATCGGGGGGGTC-GAGGGGTGTGCGCACATGATGTGCAATGGGTGCGG
321 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTG
* * * *
19462922 GTACTTGG-CCCTTCTATTGGACCCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAA
386 GTACTTGGACCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
19462986 GAGCATTTGAGATTTTACAAGTTTTCTGCTAGTAGCAATTAAAGTGTCTGAAATGGGGACAC-TT
450 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
19463050 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
515 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * **
19463115 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTTTGAAAAAATTTT-AAAAA
580 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
19463179 TCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
645 TCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* ** * * * *
19463244 TCATGTGAAGGCTTAAGGGATGATTATATGAATTTACATGCCATAAAAATGGCATTGGTAGGCAG
710 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
19463309 AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
775 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* ** * ** * * * *
19463374 TCTGGCTGGTGTAGTGCCTGCTGGTCCACCCGTCTGCTCGTTTCGTC
840 TCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* * ** * * *
19463421 GGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCTAAGATTGGATCAGACTGAGGGTTATGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTT-TTGTAG
* * * * * * * *
19463486 CAGGATC-GATAGGACGCAGAGGGGGCCCGACCGATCCTCGGCTTGTGCATCCCGCCCTTTGGCC
64 CAGGATCAG-CAGCACGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCC
* * * *
19463550 GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATCCGGAGTTCATTCCTAGTCTAA
128 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * ** *
19463615 GCATATGGAGTTCATTCCCAATCTATGATCGGATCGGACGGAGGGTTACGGCAGCACATTTTAGG
193 GC------A--T-A---CCAGT-TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
19463680 CTCGGACATGTGCT-GTGCTGCATTTTTCTTCATCGAGGCGCCAT-------CA---CCGGAGAA
245 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAGCATCGCCGGAGAA
* * * *
19463734 CCTGACCGATGGCATTGGGGTTCCGACGATC-GGGGGGCC-GAGGGGTGTGCGCACATGATGTGT
310 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTGC
* *
19463797 GATGGGTGCTGGTAC-TGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
375 GATGGGTGCTGGTACTTGGACCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19463861 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
440 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19463926 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTAGCTGAATTTTTTTGT
505 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** ** * * * *
19463991 GCATGCCAATAAAAATACAAGGATCACATCTAAAAAGTTAGGGGCCAAAACACCCTCTGAGTTTT
570 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-----
* *
19464056 TAGCTAAAAGTTTTTGTGCATGCCAACAAAAATACAAGGAACACGTCCACAAAGTTTGGGGCCAA
630 -A---AAAA----TT-T---T----A-AAAAATCCCA--AAC-CG----C--A----------AA
*
19464121 AACTCCTTCCAAAAAAATTTTGAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATA
659 AAGT--TT-C------------AAAAA--TC--A---T-----G-------AA-----A--AATA
* ** *
19464186 GAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGATGATTATATGAATTTACA
683 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
19464251 TGCCATAAAAATGGCATTGGTAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
748 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * **
19464316 CGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACCCGCCCG-CC-AAC--CCGCT
813 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCT
* *
19464377 CATTTCGTC
878 CGTTTCATC
* * * * *
19464386 GGTTGGCTTAGGCATACGGA--TC-TAT---AG-C--ACA-CAGAGGGGACCCA--G--TCGATC
1 GGTTGGCTTAGGCATACGGAGTTCAT-TCCCAGTCTAAGATCAGA-CGGACCGAGGGTTTTG-TA
* * * * * * *
19464437 CCCGGCT-TGCA-CA--T--------CCC-ACC---CCTCTGGCTGGCTG-AGCGCCCACACGCT
63 GCAGGATCAGCAGCACGTAGAGGGGACCCGACCGATCC-CCGGCTTGC-GCATC-CCC-C-C-CT
* ** * **** ** * **** * * *
19464485 CGTTTCGTGGGTTGA-CTTAGGCATACG-GAG-TTCAT-TCCCGTC-TAAGCATACGGAGTTCAT
122 C---TGGCCGGCTGAGCGCCCGC--ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
* * * *
19464545 TGCCAGTCTAAG-AT--C-------A---GACCGGACCGAGGGATACGGCAGCACATGCTGGGCT
182 TCCCAGTCTAAGCATACCAGTTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
19464597 CGAGCATGTGCTGGTGCCACATTTCTCTTCGTCGGGGCACCATCGCCG-GACATCGTCGAAGGAC
247 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAG-CATCGCCGGAGAAC
* * * * *
19464661 CTGACCGACGGCATTTGGGTTCCGACGATC-AGGGGGCCAGGGGGGTGTGCACACATGATGTGCG
311 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCG
*
19464725 ATGGGTGCTAGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
376 ATGGGTGCTGGTACTTGGACCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
19464789 CCCCCTTAAATAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTG--AT
440 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAAT
* *
19464852 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCCGAATTTTTTTG
504 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** ** * ** **
19464917 TGCATGCCAA-AAAAAGTATGAGGATCACATCTACCATGTTTGGGGCCAAAAAACCTTCAAAAAA
569 TGCATGCCAACAAAAA-TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
**
19464981 AATTTTAAAAAATCCCAAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
633 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19465046 TGCCATGAAACTTCACGTGACGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
698 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19465111 ATTGGCACGTAGAAATATGAAGATGTGCCCAAACCGACCTACCACCCTATCGATCCACGGCTTGC
763 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
19465176 GCATCCCGTCTATCTGGCCGACGTAGT----GCCCGCCCG--C-T-CG-T--TTT-GTC
828 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* * ** *
19465223 GGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTT-TTGTAG
* * * * * ** * * *
19465288 TAGGATC-GATAGTACGTAGAAGGGGACCTGGCTAATCCCCGACTTTCGCATCCTGCCCCTCTGG
64 CAGGATCAG-CAGCACGTAG-AGGGGACCCGACCGATCCCCGGCTTGCGCATCC-CCCCCTCTGG
* * * *
19465352 CCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
126 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
* * * * * **
19465417 TAGCATACGGAGTTCATTCCCAGACTATGATCAGATCGGACCGAGGGTTGCAACAGCACATGCTG
191 AAGCATAC-CAG----TT-----A--A-GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTG
* * * *
19465482 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGTCGGA
243 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-ACCGAGCATCGCCGGA
* * * * * * *
19465547 GAACCTCACCGGCGACATTAGGGTTCCGACGATCGAGGGGGCCGGAGGGGGGTGTGCGCACAAGA
307 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGGGTATGCGCACATGA
* *
19465612 TGTGTGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCAATCCCTCAT-AAAGCCTCGAGA
370 TGTGCGATGGGTGCTGGTACTTGGACCC-TATATTGGCCCCCTATCCCTCATCAAA-CCTCGAGA
*
19465675 ACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
433 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
19465740 TG-GATGGGGACAC---TTT----T--T-------TC----A-A-----A---TTTAGCTTAATT
498 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * ** *
19465775 TTTTTGTGCATGCCAAAAAAAATGCAAGGATCATGTCTACCAAGTTTACGGCCAAAACTCCTTTC
563 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * * *
19465840 GAAAAAATTTTAAAAAATCTCGATCC-AAAAAAGGTTTCGAAAATCCTGAAAAATAGAAAATGAG
628 GAAAAAATTTTAAAAAATCCCAAACCGCAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAG
*
19465904 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAA
692 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
19465969 AATGGCATTGGCATGTAGAAATTTAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
757 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * * * *
19466034 GTTTACGTATCCTGTCTCTCTGACCGATGTAGTGCCCGCCCGTCCGCCCGCACGCCCGCTCATTT
822 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C--CCGCCCGCCCGTCCGCTCGTTT
**
19466099 TGTC
883 CATC
* * * ** * ** *
19466103 GGTAGGCTTAGGCATACGAAGTTCATTCCCAGTCTAATATTGGACTGGACCGATGGTTGCGACAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTTTG-TAG
* * * ***
19466168 TAGGATCGGCAGCACGCAGAGGGG----GA-CG-----CGGC-T--G-ATCCCCAAGT-T-----
64 CAGGATCAGCAGCACGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCCG
* * *
19466213 G-T----------ACGTTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAG
129 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * *
19466267 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCACATGCTGGGC
194 ----C--A--T-A---CCAGT-TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * * *
19466332 TCGAGCATGTGCTGGTGTCGCGTTTTTCTTCATCGGGGCACCATTACCAGTGCATCACCGGAGAA
246 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACC-GAGCATCGCCGGAGAA
* * * *
19466397 CCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGT
310 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTGC
* * * * ** * *
19466461 GATGGGTACCGCTTCTTGGTA-GTTATATTGGCCCTCTATCTCTCATCAAACCTCGAGAACTCAC
375 GATGGGTGCTGGTACTTGG-ACCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19466525 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
439 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19466590 GGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTG
504 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19466655 TGCATGCCAA-AAAAATACAAGGATCAAGTCTACCAAGTTTGAGGCCAAAACTCCTTTCGAAAAA
569 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
19466719 ATTTT-AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
634 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
19466783 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCAGTGTATGAATTTACAAGCCATAAAAATGGCA
699 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19466848 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
764 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
19466913 CATCCCGTCTCTCTGGTCGGCGTAGTGCCC-CTCCGCCCGCCCGTCCGCTGGTTTCATC
829 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-CCGCCCGCCCGTCCGCTCGTTTCATC
* * * * ** *
19466971 GGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGATCAGATTGAGGGTTGCTGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTT-TTGTAG
* * * *
19467036 TAGGGTCAGCAGCACGTAGAGGGGAACCCGGCCGAT-CCCGAACTTGCGCATCCCACCCCTCTGG
64 CAGGATCAGCAGCACGTAGAGGGG-ACCCGACCGATCCCCG-GCTTGCGCATCCC-CCCCTCTGG
** * * * *
19467100 CCAACTGAGCAG-CTGCACGCTCGTTTCGTGGGTTGACTTACGCATACATAGTTCATTTCCAGTC
126 CCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
* *
19467164 TAAGCATACGGAGTTCATTCCCAG-TCTGAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGC
190 TAAGCATAC-CAGTT-A-----AGATC-G-GA-C---C-AGACCGAGGGTTGCGGCAGCACATGC
** * * *
19467228 TGGGCTCGGGCATGTGCTGGTTTCACATTTTTCTTCGCCGGGGCACCAACGCCGAAGCATCGCCG
241 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCG-AGCATCGCCG
* * *
19467293 GAGAACCTGACCGATGGCATTGGGGTTCCGACGA-C----CGG--GGGGGTGTAT--GCACATGA
305 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGA
*
19467349 TGTGCGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
370 TGTGCGATGGGTGCTGGTACTTGGACCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
19467413 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCAATTAAAGTGTCT
434 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
19467478 AAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTT
499 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* ** *
19467543 TTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTTTGGCCAAAACTCCTTCTG
564 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
19467608 AAAAAATTTTAAAAAATCCCCAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
629 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
19467673 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAATA
694 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
19467738 TGGCATTGGCAGGCAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATACACAGC
759 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
19467803 TTGCGCATCCTGTCTCTCTGGCCGACGTCGTGCCCGCCCGCCCGCCCGCCGCCCGCACGCTCGTT
824 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C-CCG---TC-CGCTCGTT
19467868 TCATC
882 TCATC
* * * * *
19467873 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTATAAGATCGGATCGAACCGACGGTTTTGATAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTTTG-TAG
* ** * * *
19467938 CAGGATCAGCAGCACGTAGAGGGTGACCTGGTCGATCCCCGGCTTGCACATCCCGCCCTCTGGTC
64 CAGGATCAGCAGCACGTAGAGGG-GACCCGACCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCC
* *
19468003 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
128 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
19468068 GCATACCAGTTAAGATCGGACCA-ATCCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTG
193 GCATACCAGTTAAGATCGGACCAGA-CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * **
19468132 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCTGACCATCGCTGGAGAACCTGACTGGTG
257 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACC-GAGCATCGCCGGAGAACCTGACCGACG
* * * *
19468197 GTATTGGGGTTCCCACGATCGGGGGGGCCGGGGGGGTATGCGCACAT-AGGTGCGATGGGTTCTG
321 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTG
* *
19468261 GTAATTGGACCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
386 GTACTTGGACCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
19468326 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
451 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
19468391 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTTTGCATGCCAACA
516 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
19468456 AAAATACCAGGATCATGTCTACCAAGTTTGGGGACAAAACTCCATCCAAAAAAATTTAAAAAAAT
581 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
19468521 CCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
646 CCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
19468586 CATGTGAAGGCTTAAGGGACCATCGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGA
711 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
19468651 AATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCATCTCT
776 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
19468716 CTGGCCGACGTAGT----GCCTGCCCG-CC-T--GCTCGTCTCGTC
841 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* * * * * ** * *
19468754 GGTTGGCTTAGGCATACAGAGTACATTTCCAGTCTAAGATTAGACTGGACCAAGGGTTGCAGCAA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTT-TTGTAG
** ** * * * *
19468819 CAGGATTGGCAGCACACAGAGGGGGACCCCACCGATCCCCGGCTTGCACATCACGCCCATCTGGC
64 CAGGATCAGCAGCACGTAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATC-CCCCCCTCTGGC
* *
19468884 TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CC---C--
127 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* *
19468943 A--AT---A--TAAGATTGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
192 AGCATACCAGTTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * ** * *
19469001 CTGGTGCCATATTGTGTT-TT-GTTGGGGCACCATTGCCGGAGC-TCAACCGGAGAACCTAACCG
257 CTGGTGCCACATT-T-TTCTTCGTCGGGGCACCATCACC-GAGCATC-GCCGGAGAACCTGACCG
* * * *
19469063 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGGTGTGCGCACACGATGTGTGATGGGTG
318 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTG
* ** *
19469128 CTGGTACTTGG-CCCTTATATTGACCCCCTATCCCTCATCATTCCTCGAGAACTCACAACCCCTT
383 CTGGTACTTGGACCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
19469192 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA--G--TGAAAT-GGGACAC
447 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
19469252 -TTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAATTTTTAGCTGAATTTTTTTGTGCATGCG
512 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
19469316 AA-AAAAAGTACAAGGATCATGTCTACCAAGTTTGGTGCCAAAAATGCTT-CGAAAAAAATTTTA
577 AACAAAAA-TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTA
* * * *
19469379 AAAAATCCCGAACCGTAAAAATTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
640 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
19469444 AAACTTCACGTGAAGGCTTAAGGGACCAATT-TATGAATTTACAAGCCATAAAAATGGCATTGGC
705 AAACTTCACGTGAAGGCTTAAGGGACC-ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
19469508 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCC
769 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
19469573 CGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGTCTGCCCCCTCGTTTCGTC
834 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* * *
19469626 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTCAGATCAGACCGGACCGA-GG-TTTGTGGC
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTTTGTAGC
* **
19469689 A-G--CA-C-GCA-G--G-GGGGACCCGACCGATCCCTGGCTTGCGCATCTCATCCCTCTGGCCG
65 AGGATCAGCAGCACGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCATC-CCCCCCTCTGGCCG
* * * * * *
19469745 ACTAAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAG
129 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
*
19469810 -AT--C-G----G--C-G--CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCT
194 CATACCAGTTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * *
19469862 GGTGCCACATTTTTCTTCGTCGGGGCACCATCACTTGAGCATCGCCGGAGAACCTGACCGACAGT
259 GGTGCCACATTTTTCTTCGTCGGGGCACCATCAC-CGAGCATCGCCGGAGAACCTGACCGACGGC
* * * * * * **
19469927 ATTGGGGTTTCGGCGATCGGGGGGGTCGGAGGCGTATGCGCACAT-AGGTGCGATGGGTTTTGGT
323 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
19469991 ACTTAGCCCCTATATTGGCCCCTTGTCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
388 ACTTGGACCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
19470056 CATTTGAGATTTTACAGGTTTGTTGCGAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTT
453 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
19470121 CAAATGGTCTCAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
518 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
** * * *
19470186 AATACAAGGATCACATC-ACCAAGTTTGGGGCCAAAACTCCTACCGAAAAACTTTTAAAAAATCT
583 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
19470250 CTAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTGGTCTTGCCATGAAACTTCA
648 CAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
19470315 CGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
713 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * * * *
19470380 TATGAAGATATGCCTAAACCCACCTACTACCCTATCGATCCACGGCTAGCGCATCCCGTCCCTTT
778 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
19470445 GGTCGGCATAGT----GCCCGCCCGCCCGTCCGCTCGTTTCGTC
843 GGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* * * ** *
19470485 GGTTGGCTTAGTCATACGGAGTCCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTT-TTGTAG
* * * * * *
19470550 CAAGATCGGTAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCCCACCCCTCTGGC
64 CAGGATCAGCAGCACGTAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGC
* * * *
19470615 CGGTTGAGCGCCCGTACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
127 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * * *
19470680 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCACATGCT-G
192 AG----C--A--T-A---CCAGT-TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
19470744 GCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGCCGGGGCACCAT---C--G--T---TGAAGA
244 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAGCATCGCCGGAGA
* * * * * *
19470799 ACCTGACCGACGACATTGGGGTTCCGACAATCGGGGTGGCCAGGGGGGTGTGCGCACATGATTTG
309 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTG
** *
19470864 CGATGGGTGCTGGTAC-TCAACCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
374 CGATGGGTGCTGGTACTTGGACC-CTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
19470928 CACCCCCTTGAAGAGCATTCGAGATTTTATAAGTTTGCTGCCAGTAGCCA-AAAAGTGTCTGAAA
438 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19470992 TGGGGACACATTTTTCAAAAGGTCACGAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
503 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * *
19471057 GAACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAGAATTCCTTCCGAAAA
568 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
19471122 ACTTTTAAAAAA-CCCTGAACCGCATAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
633 AATTTTAAAAAATCCC-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
19471186 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCGTGGTATGAATTTACAAGCCATAAAAATGC
697 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19471251 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTA
762 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19471316 CGTATGCCGTCTCTCTGGCCGACGTAGTGCCCACCCACCCGCCCGTCCGCTCGTTTCATC
827 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
* * * *
19471376 GGTTGGCTTAGGCGTACGGAGTTCATTCCTAGTCTAAGATCAAACCGGATCGAGGGTT
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTT
19471434 ACAACAGCAC
Statistics
Matches: 11203, Mismatches: 1476, Indels: 1232
0.81 0.11 0.09
Matches are distributed among these distances:
837 22 0.00
838 3 0.00
839 3 0.00
840 2 0.00
841 8 0.00
842 4 0.00
843 1 0.00
844 132 0.01
845 176 0.02
846 8 0.00
847 170 0.02
848 5 0.00
850 6 0.00
851 4 0.00
852 4 0.00
853 1 0.00
854 3 0.00
855 2 0.00
856 1 0.00
857 3 0.00
858 111 0.01
859 290 0.03
860 13 0.00
861 13 0.00
862 15 0.00
863 325 0.03
864 645 0.06
865 30 0.00
866 72 0.01
867 17 0.00
868 482 0.04
869 241 0.02
870 300 0.03
871 275 0.02
872 369 0.03
873 137 0.01
874 517 0.05
875 295 0.03
876 137 0.01
877 690 0.06
878 22 0.00
879 287 0.03
880 73 0.01
881 101 0.01
882 70 0.01
883 50 0.00
884 12 0.00
885 200 0.02
886 682 0.06
887 370 0.03
888 112 0.01
889 250 0.02
890 55 0.00
891 86 0.01
892 20 0.00
893 507 0.05
894 68 0.01
895 245 0.02
896 566 0.05
897 174 0.02
898 154 0.01
899 46 0.00
900 16 0.00
901 670 0.06
902 110 0.01
903 9 0.00
905 8 0.00
906 1 0.00
909 7 0.00
910 1 0.00
911 3 0.00
912 1 0.00
913 1 0.00
914 2 0.00
915 40 0.00
916 25 0.00
918 6 0.00
921 1 0.00
923 2 0.00
926 47 0.00
927 145 0.01
928 104 0.01
929 2 0.00
930 2 0.00
931 1 0.00
932 1 0.00
934 1 0.00
936 2 0.00
937 7 0.00
938 3 0.00
939 4 0.00
940 4 0.00
941 28 0.00
942 2 0.00
943 11 0.00
944 8 0.00
945 5 0.00
950 2 0.00
951 3 0.00
952 6 0.00
954 1 0.00
955 1 0.00
956 6 0.00
957 2 0.00
959 1 0.00
960 1 0.00
962 3 0.00
963 3 0.00
965 31 0.00
967 2 0.00
968 2 0.00
969 177 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTTTGTAGCA
GGATCAGCAGCACGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCCGGC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
TACCAGTTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCACATTTTTCTTCGTCGGGGCACCATCACCGAGCATCGCCGGAGAACCTGACCGACGGCATT
GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGACCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAA
ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATC
Found at i:19470684 original size:26 final size:26
Alignment explanation
Indices: 19470655--19470707 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19470645 GTTGACTTAG
19470655 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
19470681 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19470707 G
1 G
19470708 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19473190 original size:26 final size:26
Alignment explanation
Indices: 19473154--19473206 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19473144 GTTGATTTAG
19473154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19473180 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19473206 G
1 G
19473207 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19473702 original size:901 final size:900
Alignment explanation
Indices: 19471390--19473877 Score: 3539
Period size: 903 Copynumber: 2.8 Consensus size: 900
19471380 GGCTTAGGCG
* * * *
19471390 TACGGAGTTCATT-CCTAGTCTAAGATCAAACCGGATCGAGGGTTACAACAGCACATGCTGGGCT
1 TACGGAGTTCATTCCCT-GTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCT
*
19471454 CGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-AGGCACCA----T----CA--G-CGGAGAAC
65 C-GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCGCCGGAGAAC
* * * *
19471507 CTGACCGATGGCATTGGGGTTTCGGCGATTGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGAT
129 CTGACCGATGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
19471572 GGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
19471637 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCGAGTAGCAATTAAAGTGTCTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
19471702 ACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
19471767 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTT
389 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
** * *
19471832 TAAAAAATCT-GAAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
454 TAAAAAATCTCG-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
* * *
19471896 ATGAAACTTAACGTGAAGGCTGT-AGGGACCATTGTATGAATTTAAAAACCATAAAAATGGCATT
518 ATGAAACTTCACGTGAAGGCT-TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
19471960 GACACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
582 GGCACGTAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * **
19472025 TCCCGCCCCTCTGGCCGGCGTAGTGCCCACCC-CCTTGCCCGCCCGCTCATTTCGTCAGTTGGCT
647 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-CGCCCGCCCGCT-ATTTCATCAGTAAGCT
* *
19472089 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGTAGCAAGATCA
710 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAAGATCA
** *
19472154 GTAGCACGTAGAGGGTGACCCGACCAATCCCCAGCTTGCGCATCCCACCCCTCTAGACAGCTGAG
775 GTAGCACACAGAGGGGGACCCGACCAATCCCCAGCTTGCGCATCCCACCCCTCTAGACAGCTGAG
** *
19472219 CGCCCGCACTCTCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCA
840 CGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
19472280 TGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
* * * * *
19472345 GACCATGTGCTGGTGCCGCATTTATCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACC
66 G-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCGCCGGAGAACC
* * * * *
19472410 TGACCGGTGGTATTTGGGTTCTGGCGATCAGGGGGGTCGGGGGTGTGTGCGCACATGATGTGCGA
130 TGACCGATGGCATTAGGGTTCCGGCGATC-GGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGA
*
19472475 TGGGTGTTGGTACTT-GCACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
193 TGGGTGCTGGTACTTGGC-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
19472539 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
19472604 GGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGATTTTTTAGCTAAATTTTTTTGAG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
19472669 CATGCCAACAAAAATACAGGGATCATGTGTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
387 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * * *
19472734 TTTAAAAAATCTCAAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGT-AGTGTTG
452 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA-TCTTG
*
19472798 CCATGAAACTTCA-GTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19472862 TGGCACGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
581 TGGCACGTAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
19472927 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCT-TGTTCATCGGTAAGCT
646 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTAT-TTCATCAGTAAGCT
* * * * **
19472991 TAGGCATATTGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGTAGCACGATTG
710 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAAGATCA
** * * * *
19473056 GTAGCACACAGAGGGGGACCC-AGCTGATCCCCGGTTTGCGCATCCCACCCCTCT-GGCTGGCTG
775 GTAGCACACAGAGGGGGACCCGA-CCAATCCCCAGCTTGCGCATCCCACCCCTCTAGAC-AGCTG
* * * * *
19473119 GGCGCCCGTAAGCTCATTTTCGTGTGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
838 AGCGCCCGCAAGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
19473183 TATGGAGTTCATTCCCTGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
*
19473248 AGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTTGGAGCATCGCCGGAGAACC
66 -GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCGCCGGAGAACC
* ** * *
19473313 TTACCGACAGCATTAAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
130 TGACCGATGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
19473378 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
19473443 CGTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
19473508 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATGTTTTTGTGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** * *
19473573 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTAAGGGCCAAAACCCCTTCCGAAAAAATTTT
390 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
*
19473638 AAAAAATCTCGAACCGCAAAACA-TTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
455 AAAAAATCTCGAACCGCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
19473702 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
519 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
19473767 CATGCAGAAAATATGAAAATGTGCCTAAACCCACCTACCACCGTATCGATCCATGACTTGCGCAT
584 CACGTAG-AAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
19473832 ACCATCTCTCTAGCC-AGCATAGTGCCCGCCCGCCCGCCCGCCCGCT
648 CCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGCT
19473878 CGTTTCGTCA
Statistics
Matches: 1419, Mismatches: 147, Indels: 51
0.88 0.09 0.03
Matches are distributed among these distances:
889 1 0.00
890 81 0.06
891 9 0.01
899 2 0.00
901 331 0.23
902 235 0.17
903 427 0.30
904 333 0.23
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (900 bp):
TACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCGCCGGAGAACCT
GACCGATGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGTAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTATTTCATCAGTAAGCTTAGGCA
TATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAAGATCAGTAGCA
CACAGAGGGGGACCCGACCAATCCCCAGCTTGCGCATCCCACCCCTCTAGACAGCTGAGCGCCCG
CAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19475583 original size:26 final size:28
Alignment explanation
Indices: 19475535--19475586 Score: 81
Period size: 26 Copynumber: 1.9 Consensus size: 28
19475525 TGACTTAGGC
*
19475535 ATACGGAGTTTCCATTCCTAGTCTAACG
1 ATACGGAGTTTCCATTCCCAGTCTAACG
19475563 ATACGGAG-TT-CATTCCCAGTCTAA
1 ATACGGAGTTTCCATTCCCAGTCTAA
19475587 GATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 13 0.57
27 2 0.09
28 8 0.35
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (28 bp):
ATACGGAGTTTCCATTCCCAGTCTAACG
Found at i:19477131 original size:26 final size:26
Alignment explanation
Indices: 19477102--19477153 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19477092 TTGGCTTAGA
*
19477102 CATACGGAGCTCATTCCTAGTCTAAG
1 CATACGGAGCTCATTCCCAGTCTAAG
* *
19477128 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGCTCATTCCCAGTCTAAG
19477154 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGCTCATTCCCAGTCTAAG
Found at i:19478932 original size:26 final size:26
Alignment explanation
Indices: 19478903--19478955 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19478893 GTTGACTTAG
*
19478903 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19478929 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19478955 G
1 G
19478956 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19479842 original size:26 final size:26
Alignment explanation
Indices: 19479806--19479858 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19479796 GCTGACTTAG
* *
19479806 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
19479832 GCATAAGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
19479858 G
1 G
19479859 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:19480197 original size:903 final size:900
Alignment explanation
Indices: 19476226--19481499 Score: 7211
Period size: 901 Copynumber: 5.9 Consensus size: 900
19476216 GTTGGTTTAG
* * *
19476226 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19476291 CTCGGGCATGTGCTGGTGCCACATTTTTATTCGTTGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
19476356 ACCTGACCGGCGGCATTGGGGTTCTGGCGATTCGGGGGGTCGGGGGGGGTGTGCACACAAGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCCGGGGGGGGTGTGCGCACATGATGT
*
19476421 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19476486 CACCCCCTTACAGAGCATTTGAAGATTTTACAGGTTTACTGGCCAGTAGCCATTAAA-TGTCTGA
260 CACCCCCTTAAAGAGCATTTG-AGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGA
*
19476550 AATGGGGAACACTTTTTTTCAAATGGTCA-TAAATCTTGTACACTTCGAG-TTTTAGCTGAATTT
323 AATGGGG-ACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
19476613 TTTTGTGGCATG-CTACAAAAATAC-AGGATAATGTCGACCAATGTTTGGGGC-AAAAATCCTTC
386 TTTTGT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCTAAAACTCCTTC
* ** * * *
19476675 CAGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCTAAAATCATGGAAAATAGAAAACGA
449 C-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
19476740 GTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAGGCCATAA
513 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * *
19476805 AAATACCATTGGCACT-TAG-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCA
578 AAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
19476868 CGGCTTGCGCATCCAGTCTCTCTGGCTGGAGTAGTGCCC-ACTCGTCCGCCCGCTTGTTTCATCG
642 CGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCT-GCCCGCCCGCTCGTTTCGTCG
** * * * ** *
19476932 GTTGGCTTAGGCATACGGAGTTCATTCGTAGTCTAAGATCGGACCGGACCAAGAGTTGTGGCCGC
706 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGC
* * * * * * * * *
19476997 AAGATTGGTAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGTGCATCTCGCCCCTCTTGCC
771 AGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * * * * *
19477062 GACTGAGCACCTGCACACTCATTTCATGGGTTGGCTTAGACATACGGAGCTCATTCCTAGTCTAA
836 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
19477127 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCTACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
** * * *
19477192 CTTAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
19477257 ACCTGACCGACGACATT-GGGTTCCGACGATCGAGGGTGCCGAGGGGGGGTGTGCGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATTG-GGGGGCCG-GGGGGGGTGTGCGCACATGATG
*
19477321 TGCGATGGGTGCTGGTACATGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
19477385 ACACCCCCTTAAAGATCGTTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19477450 ATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTC
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
19477515 TGTACATGCGAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAA
* * * * * *
19477580 AAATTTCAAAAAAATCCCAAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGGGTCGT
454 AAATTT-TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
19477645 CTTGCCATAAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
19477710 GCATTGGCATGCGGAAATATGGAGATGTGCCTAAGCCCACCTAGCACACTATCGATCCATGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * **
19477775 GCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCT
648 GCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
19477840 TAGGCATATGGAGTTTATTCCCAGTCTAAGATC-GAACCAAACTAAGGGTTGCAGCAGCAGTATC
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGCAGCAGCAGGATC
** * * * * *
19477904 AACAGCGCATAGAGGGGGACCCCG-CCGATCATCAGCTTACGCATCCCGCCCCTCTGGCCGGTTG
777 GGCAGCACGTAGAGGGGGA-CCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
19477968 AGCGCCCGTACACTCGGTTCTTGGGTTGACTTAGCCATACAGAGTTCATTCCCAGTCTAA
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
19478028 GCATACGGAGTTCATTCCCAGTCCAAAATTGGACCAAACTAAGGTTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
19478093 CTCAGGCATGTGCTGGTGCTGCATTTTCCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
19478158 ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGAGGGTGTGCGCACTTGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGGTGTGCGCACATGATGTG
* * * * *
19478223 CGATAGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCCTCATTAATCCTTGAGAACTCA
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAACCTCGAGAACTCA
* * *
19478288 CACCCCCTTAAAGAGCATTTGAGATTTTCCAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19478353 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
19478418 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAA
*
19478483 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19478548 TGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19478613 ATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * **
19478678 GCATCCCGTCTCTCTGGCCT-TCGTAGTGCCCACCTGCCCGTTCGCTCGTTTCGTCGGTTGGCTT
650 GCATCCCGTCTCTCTGG-CTGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
19478742 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTGTAGCAGCAGGATTGG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGG
* * * * * *
19478807 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCGCACCCCTCTGGCTGGCTGGGC
779 CAGCACGTAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
19478872 GCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
844 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19478929 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
** *
19478994 CAT-GGGCATGTGCTGGTG-CGCATTTTTCTTCG-CTGGGGCACCATCGTGGGAGCATCGTCGAA
66 C-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGA
* *
19479056 GAACCTGACCGACGACATTGGGGTTCCGACGGTTGAGGGGGCC-GGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATTG-GGGGGCCGGGGGGGGTGTGCGCACATGAT
* * * *
19479120 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAATCGTTGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
19479185 CACACCCCCTTAAAGAGCATTTGAGATTTTCCAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
19479250 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* **
19479315 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCTAAAACTAATTCCGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAA
**
19479380 AAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
19479445 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * ** *
19479510 GCATTGGCATGTAGAAATATGAAGTTGTGCCTAAACTCACCTACCACTATATCTATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19479575 GCGCATCCCGTCTCTCTGGCTGGCGTAGTGCTCGCTTGCCTGCCCGCCCGTTCGTTTCATCTGTT
648 GCGCATCCCGTCTCTCTGGCTGGCGTAGTGC-C-C--GCCTGCCCGCCCGCTCGTTTCGTCGGTT
* * *
19479640 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGTAGCAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGG
* * * * * * *
19479705 ATCGACAGCACGTAAAGGGGGACCCGGCCAATCCTCAACTTGCCCATCCCGCCCCTCTAGCCGGC
774 ATCGGCAGCACGTAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
19479770 TAAGCACCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19479832 GCATAAGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCATATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* *
19479897 GTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
19479962 ACCTGACCGATGGCATTGGGGTTCCCACGATTGGGGGCCCGGGGGGGGTGTGCGCGCATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGGTGTGCGCACATGATGTG
* * *
19480027 CGATGGGTGGTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATTAATCCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19480091 ACCCCCTTAAAGAGCATTTGCA-ATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
261 ACCCCCTTAAAGAGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19480155 TGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
19480220 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCTAAAACTAATTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAA
**
19480285 AATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
19480350 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19480415 ATTGGTAGGCAGAAATATGAAGATGTGCCGAAACACACCTACCACCCTATCGATTCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
19480480 GCATTCCGTCTCTCTGGCTGGTGTAGTGCCCGCCT----TCCCACTCGTTTTGCCGATTGGCTTA
650 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** *
19480541 GGCATACAGAGTTCATTCCCAGTCTAAGATCTGACTGGACCAAGGGTTGCAGTAGCAGGATCGGC
715 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGGC
* * * * * *
19480606 AGCTCGTAGAGGGGGACCCGATCGATCCTCAGCTTACGCATCCTGCCCCTCTGGCAGGCTGAGTG
780 AGCACGTAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
19480671 CCCACACGTTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
845 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * **
19480727 ACATACGAAGTTCATTCCCAGTCTAAGATCAGACCGTACCGAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
19480792 CTCGAGCATGTGCTGGGGCCATATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
19480857 ACCTGACCGGCGGCATTAGGGTTCC-AGCGATCGGAGGGGCC-GGGGGGGTGTGCGCACAT--TT
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATTGG-GGGGCCGGGGGGGGTGTGCGCACATGATG
* *
19480918 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
19480983 ACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTCCCAGCAGCCACTAAAGTGTCTGGA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
19481048 ATGGGGACACTTTCTTCAAATGGTTAGAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
19481113 TATGCATGCCAACAAAAATACCAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAT
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAA
* * * *
19481178 GAATTTTAACAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCTTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
19481243 TTGTCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAACGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19481308 CATTGGCATGCAGAAATATGAAGATATGCCTAAATCCACCTACCACCCTATTGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
19481373 CGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTTGGTTA
649 CGCATCCCGTCTCTCTGGCTGGCGTAGT----GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTG
* * *
19481438 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGTAGCA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCA
19481500 CATGCCAGGC
Statistics
Matches: 3881, Mismatches: 447, Indels: 89
0.88 0.10 0.02
Matches are distributed among these distances:
893 33 0.01
894 406 0.10
895 335 0.09
896 5 0.00
897 15 0.00
898 53 0.01
899 504 0.13
900 393 0.10
901 1016 0.26
902 301 0.08
903 695 0.18
904 124 0.03
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCA
GCACGTAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19482349 original size:26 final size:26
Alignment explanation
Indices: 19482311--19482363 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19482301 GTTGACTTAG
* * *
19482311 GCATACGGGGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19482337 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19482363 G
1 G
19482364 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19483260 original size:26 final size:25
Alignment explanation
Indices: 19483209--19483260 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
19483199 GGTGACTTAG
*
19483209 GCATAGGAGTTCATTCCCAGTATAA
1 GCATAGGAGTTCATTCCCAATATAA
* *
19483234 GCATACGGAGTTCATTCCTAATCTAA
1 GCATA-GGAGTTCATTCCCAATATAA
19483260 G
1 G
19483261 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCCAATATAA
Found at i:19483648 original size:897 final size:894
Alignment explanation
Indices: 19481444--19495358 Score: 13442
Period size: 903 Copynumber: 15.8 Consensus size: 894
19481434 GTTAGCTTAG
* * * * * * **
19481444 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGTAGCACATGCCAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
19481509 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGTGCCA---TCG-T--CGGAGAACCTG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGCTGCCGGAGAACCTG
* * * *
19481568 ACCGGCGGCATTGGGGTTCCGGCGAAC-GAGGGGCCGGGGGTGGTGTGCGCATATGATGTGCGAT
131 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGG-GGTGTGCGCACATGATGTGCGAT
* *
19481632 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCAAACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
19481697 CCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAACGTGTCTG-AATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
19481761 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * *
19481826 TGCCAACAAAAATAAAAGGATCACGGCTACCAAAATTTGGGGCCAAAAATCCTTCCAAAAAAATT
390 TGCCAAAAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
19481891 TTAAAAAATCCCGAACCTTAAAAAGTTT-AGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGC
454 TTAAAAAATCCTGAACCGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
19481955 CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAATTGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
19482020 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCA
583 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
19482085 TCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCCGCCCGCTTGCTCATTTCGTCGGTTGGCTT
648 TCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
19482150 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGCAGCAGCAGGATTGA
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * *
19482215 CAGCACGCAGAGAGGGACCTAGCCGATCCCTGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
773 CAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
19482280 ACCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGGGTTCATTTCTAGTCTAA
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
19482337 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** * * *
19482402 CTCGATCATGTCCTGGTACTGTATTTTTCTTCCCCGAGGCACGATCGTCGGAGCTTCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC---GC-T-GCCGGAGA
* * *
19482467 ACCTGACCGGCGGCCTTGGGGTTCCGGCGATTGGGGGGGCCA-GGGGGTGTGCACACATGATGTG
126 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* *
19482531 CGATGGGTGCTGGTACTTGG-CATTCATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCA
191 CGATGGGTGCTGGTACTTGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19482595 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCTAGTAGCCATTAAAAG-GTCCGAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTGAA
* * *
19482659 ATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * *
19482724 TGTGTGTGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
384 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
19482789 AAAGTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATC
449 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
19482854 TTGCCATGAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTTCAAGTCGT-AAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19482918 CATTGGCACGTAGATATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
579 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19482983 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGTTT
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTT
* ** * *
19483048 AGGCATACGGTGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAACAGGATCGG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * *
19483113 CAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGTATCCTGCCCCTTTGGCCAGTTGAGC
773 CAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
19483178 CCCCGCACGCTCGTTTCGTTGGG-TGACTTAGGCATA-GGAGTTCATTCCCAGTATAA
838 GCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19483234 GCATACGGAGTTCATTCCTAATCTAAGATCGGACTAGACCGACGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
19483299 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC---GC--TGCCGGAGA
* * * * *
19483364 ACCTGACCGGCGGCATTGGGGTTCTGACGATTGGGGGGGCCATGGGGGTGTGCACACATGATGTG
126 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
** * * *
19483429 CGATGGGTGCTGGTACTTGGCATTTATATTAGCCCCCTATCCCTCATCAAACCCCTAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19483494 ACCCCCTGAAAGAGCATTTGAGA-TTTAAAGGTTTGCTGTCAGTAGCCATTAAAGGGTCTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19483558 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTT-GAGTTTTTAGCTCAATTTTTTT
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19483622 GTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAA
385 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
19483687 AATTTTAAAAAAT-CTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTC
450 AATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19483751 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19483816 CATTGACACACAGAAATATAAAGATGTGCCTAAACCCACCTACCTCCCTATCGATCCACGGCTTG
579 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19483881 CCCATCCCGTCTCTCTGGCCGGCATAGTGCTCG-CC-CAC-CCGCTTGTTTCGTCGGTTGGCTTA
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTA
* * * * ** *
19483943 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGTTGCAGGATCGAC
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * ** *
19484008 AGCACGCAGAGGGGGACCCGGTCGATCCATCGGCTTGCTCATCCCGCCCCTCCGACTAGTTGAGC
774 AGCACGCAGAGGGGGACCCAGCCGATCC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
19484073 ACCCGCACGTTCGTTTCATGGGTTGAC-T-----TA--G-G--------C---CT-A
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19484109 -C--A--GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * **
19484169 CTCGGGCATGTGTTGGTGCTGTATTTTTCTTCGCCAGGGAACCATCGTCGGAGCATCACCAAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC---GC-T-GCCGGAGA
* * * * * * * * *
19484234 ACCTGATCGACGGGATTGGGGTCCCGGCAATCAGGGGGG-CTGTGGGGGGGTGCACACATGATGT
126 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAG-GGGGGTGTGCGCACATGATGT
*
19484298 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19484363 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19484427 TGTGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
19484492 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAA
385 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
19484557 AATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
19484622 TGCCATGAAAATTTACGTGGAGGCTTAA--G----TTGTATGAATTTACAAACCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
19484681 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGC
580 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
19484746 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG--C-CCGCTCGTTTCGTCGGTTGGCTTAG
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * * * * *
19484808 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATC-GAATCGAGGGTTGCGACAGCTGGATTGGT
710 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
19484872 AGCA-GACAGAGGGGGACCC-GACTGATCCCCGGCTTACGCATCCCACCCCTTTGGCCGGCTGAG
774 AGCACG-CAGAGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
19484935 GGCCC-C-CG--CG-TTCCT--TTTG---T-GG-GT--GGA---C-TT---AG-----
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19484967 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19485032 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCA---TCG-T--CGGAGAACCCG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGCTGCCGGAGAACCTG
* * * *
19485091 ACCGACGGCATTGGGGTTCCGACGATCGGTGGGGCC-GGGGGGTGTGCGCACATGATGTACGATG
131 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATG
* *
19485155 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTAACACCCC
196 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
19485220 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
261 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
19485285 CACTTTTTTCAAATGATCACAAAATCTTGTACAGTTCAAGTTTTTAGCTGAATTTTTTTTTGCGT
326 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
19485350 GCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCGGAAAAAATTTT
391 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
19485415 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTTCCAT
456 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
19485480 GAAACTTCACGTGAAGGCCTACGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGA
521 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
**** *
19485545 AAATGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
586 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
19485610 CGTCTCTCTAGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGGTTAGG
651 CGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGG
* * * ** *
19485675 CATACGAAGTTCATTCCCAGTTTTAGATCAGACTGGACGGAGGGTTGCGGCAGCAGGATCGGCAG
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * * * * *
19485740 CACGCAGAAGGGGAACCTA-TCGATTCTCGGTTTACGCATCCCACCCCTCTGGCCGGCTGAGTGC
776 CACGCAG-AGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
19485804 CCGCA-GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19485858 G-AT-C-G-G---------A--C------CGGACC--A---AGGGTTGCGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19485897 CTCGGGAATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---T--C-GCCGGAGAACCTG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGCTGCCGGAGAACCTG
*
19485956 ACCGGTGGCATTGGGGTTTCCGGCGAT---------C-GGGGGGTGTGCGCACATGATGTGCGAT
131 ACCGGCGGCATTGGGG-TTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
19486011 GGGTGCTGATACTTAGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGATAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
19486076 CCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
19486141 ACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
19486206 TACCAACAAAAATACAAGGATCACATCAACCATGTTT-GGGCCAAAACTCCTTCCGAAAAAATTT
390 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * ** * * *
19486270 T-AAAAATCCCGAACCTTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAATCGTCTTGCCA
455 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
19486334 TGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATCG-ATTTACAAGCCATAAAAATGGCATTG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCATAAAAATGGCATTG
* * *
19486398 GCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCAT
584 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * ** * * * *
19486463 CCCGTCACTCTGGCCGGTGTAGTGCCCGCTTG--C-CCGCTTGTTTCATCGGTTAGATTAGGCAT
649 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * ** * * * * *
19486525 AAGGAGTTCATTCCCAATTTAAGATCAAACCAGATGGAGGGCTACGGTAGTAGGATCAGCAGCAC
714 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* ** * * * * * *
19486590 ACA-AATGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGGCTAAAAACGCCC
779 GCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT--GAGCGCCC
*
19486654 GCACGCTCG-TTCAGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAA
842 GCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
19486707 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGCAACACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19486772 CTCGAGAATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCA---TCG-T--CAGAGAACCTG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGCTGCCGGAGAACCTG
* * * * *
19486831 ACCAGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATTTGCGATG
131 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATG
*
19486896 GCTGCTGGTAGC-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
196 GGTGCTGGTA-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19486960 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGT
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
19487025 ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
19487090 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAAAAATTT
390 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
19487155 TAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
455 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
19487220 GGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAATGGCATT-G
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
19487284 CATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATTCATGGCTTGCGCATG
585 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
19487349 CCGTCTCTCTGTCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTGTCGTCGGTTGGCTTAGGCAT
650 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
19487414 ACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGCAGGATTGGCAGCGC
714 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * * *
19487479 GTAGAGGGGGCCCCAGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGATCGCCCGT
779 GCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
** * * *
19487544 ACGCTCGTTTTATGGGTTGACTTAGGCATTCAGAGTTCATTCCTAGTCTAA
844 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19487595 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTC-GCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-CGGCAGCACATGCTGG
* * * *
19487659 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCA---TCGCT---AGAGAACCT
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGCTGCCGGAGAACCT
* *
19487718 GACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCCAGGAGGGGTTGTGCGCACATGACGTGCG
130 GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGG-GGGG-TGTGCGCACATGATGTGCG
* *
19487782 GTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
19487847 CGCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19487912 GGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTT-TG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
19487975 --TG-C---------AC---G---A---CTACCATGTTTGGGGCCAAAAATCCTTCTGAAAAAAT
388 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
19488019 TTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGTCTTCTTGC
453 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * * *
19488084 CATGAAACTTCACGGGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAGAAATTGTATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
**
19488149 GGCACATAGAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCAC-GCTTGCGCA
583 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
19488212 TCTCGTCTCTCTGGCCGACGTAGGGCCCGCCTGTCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTT
648 TCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C---CCGCCCG-CCGCTCGTTTCGTCGGTTGGCTT
* * * *
19488277 AGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGAATCGG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
** * * * * *
19488342 CATTACACAGA-GGGGACTC-GACCGATCCCCGGATTACGCATCCCGCCCCTTTGGCCGGCTGAG
773 CAGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
19488405 CGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTCTAA
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19488463 GCATACGGAGTTCATTCTCAGTCTAAGATTGGACCAGACCGAGGGTTACGACAGCACACGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19488528 CTC-AGGCATGTGCTGGTGCCGCATTTCTCTTCATCGGGGCACCATCGCCAAAGCATCGCCGGAG
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC---GC-T-GCCGGAG
* * * * *
19488592 AGCCTGACTGACGGCA------TTCCGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATG
125 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-AGGGGGGTGTGCGCACATGATG
* * ** *
19488651 TGCGATGGGTGCTGGTACTTGCCCCTAATATTGGCCAACTATCCCTCATCAAACCTTGAGAACTC
189 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19488716 ACACCCCCTTAAAGAGCATTTGAGATTTGACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19488781 ATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGCTGAATTTTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19488846 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAATTTGGGGCCAAAACTCCTTCCGAAA
384 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * ** *
19488911 AAATTTTAAAAAAT-CTCGAAGCGCAAAACGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGT
449 AAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
** * *
19488975 CTTGCCATGAAACTTCACGTGAAGGCTTAAAAGACCATTGTATGATTTTACAATCCATAAAAATG
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * **
19489040 GCATTGGCATGCAGAAATATCATGATGTAACTAAACCCACCTACCACCCTATCGATCCACGGCTT
578 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
19489105 GCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCCGCCAGCTCGCCCGCCTACTCGTTTCGTCGGC
643 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCCG-C--C-CGCCCGCC-GCTCGTTTCGTCGGT
* * * ** * *
19489170 TGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAATGAGGGTTACGGTAGCAG
702 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
* * * * * *
19489235 GATTGGTAGCACGTAAAAGGGGACCC-GACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
767 GATCGGCAGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
19489299 ACTGAGCGCCCGCACGCGCGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
19489363 GCATACGGAGTTCATTCTCAATCTAAGATCGGATCGGACCAAGGGTTGCGCCAGCATATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19489428 CTTGGGAATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCA---T--C-GCCGGAGAACCTG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGCTGCCGGAGAACCTG
* * * * *
19489487 ACCGACGGCATTGGGGTTGCGACGATCGGGGGGGCC-GGGGGGCTGCGGGCACATGATGTGCGAT
131 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGG-TGTGCGCACATGATGTGCGAT
* * *
19489551 GGGTGCTGGTACTTGGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAAATCAAACC
195 GGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
19489616 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
19489681 GACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** * * * *
19489746 ATACCAAAAAAAATACAACCATAATGTCTACCAAGTTTGGGACCAAAACTCTTTCCGAAAAAATT
389 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
19489811 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
454 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19489876 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-ACAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
19489940 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
584 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
19490005 CCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTCCACCCGCCTGCTCATTTCGTCGGTTGGCTTA
649 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCC-GCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
19490070 GGCATACAGAATTCATTCCTAGTCTAAGATTAGACTAG-CCTGAGGGTTGCGGCAACAGCATCGA
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-GAGGGTTGCGGCAGCAGGATCGG
* * * *
19490134 CAGCATGCAGAGGGGGACCCAACCGATCCCCGGCCTACGCATCCCG-CCCTACTGGCCGGCTGAG
773 CAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAG
* * * *
19490198 CGCCCGCACGCTCATTTCCTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
19490256 GTAAATGGAGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * ** *
19490321 CTCGAGCATTTACTGGTGTCACATTTTTCTTCGCCGGGTCACCATCACCGGAGCAT-CATCGAAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---CGTCGC-TGC--CGGAG
** * * *
19490385 AACCTGACCGATGGCATTGGGGTTCCGACGGTCGGGGGGGCCA-GGGGGTGTGCACACATGATGT
125 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
** ** *
19490449 GCGATGCATGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAACCTCGAGAACTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19490514 CACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19490579 TGAGGACACTTTTTTCAATTGGTAACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * ** *
19490644 GTGCATCCCAACAAAAATACAAGTATCACATCTACCAATTTTGGGGTTAAAACTCCTTTCGAAAA
385 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
19490709 AATTTTAAAAAAT-CTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTC
450 AATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* **
19490773 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTATGAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
19490838 CATTGGCACATAGAAATATGAAGATTTGCGTAAACCCACATACCACCCTATCGATCCACGGCTTG
579 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * **
19490903 CGCATCCCGTCTCTCTGGCCGACGCAGTGCCAACCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTT
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
19490968 AGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATTGG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * * * *
19491033 CAGTACGTAGAGGGGGACCCGGCCAATCCCCGGCTTG-GACATCTCGCCCTTCTGGCCGACAGAG
773 CAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCCGGCTGAG
* *
19491097 CGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19491155 G-AT-C-G-G---------A--C------C-G----GACCGAGGGTTGTGACAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
19491194 CT-TAGGCATGTGCTGGTGTCGTATTTTTCTACACCGGGGCACCA---TCG-T--CGGAGAACCT
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGCTGCCGGAGAACCT
** *
19491252 GACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCC-GGGGGGTGTGCGCGCATGATGTGCGAT
130 GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGAT
* * * * ** ** ** * ** **
19491316 GGGTGCTGGTACTTGG-CCTGATCGTT-TCGTCGGT-TGGCT--T-AGGCATACG-GAGTTCATT
195 GGGTGCTGGTACTTGGCCCTTAT-ATTGGC-CCCCTATCCCTCATCAAACCT-CGAGAACTCACA
** * *** ** * ** ** *
19491374 CCCAGTCT-AAGATCTAACCG-GA--CCA-AGGGTTGC-G---GTAG-CAGGATCG-GTAGCACG
257 CCCCCT-TAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT--C-TG
** *** *** * *** * ** **
19491428 CAGAA-GGGGACCCGACCGATCCCCGGCTTGCG-CATCCCACCCCTT-TGGC-CGGCTGAG-TGC
317 -A-AATGGGGA--C-A-CTTTTTTC-AAATG-GTCA--CAAAATCTTGT-ACACTTC-GAGTTTT
** * * ** * ** * ** *** * * **
19491488 CCGCACG-CTCGTTTCGTGGGTTGAC-TTAGGCATAC--GGAGTTCA--T-T-CCCAGTCT-AAG
370 TAGC-TGAATTTTTTTGT-GCATGCCAAAAAAAATACAAGGA--TCACGTCTACCAAGTTTGGGG
** * * * * * ** * * * * *
19491544 -CATATGGAGTTCATTCC----CAA-TCT--AAGATCGGACTGTACCG---AGGGATGC-GACAG
431 CCA-A---AACTCCTTCCGAAAAAATTTTAAAAAATC---CTGAACCGTAAAAAGTTTCAAAAAT
* *** **** * * *** **** ** *
19491597 CACG--TGCT-GGGCTC-AGGCATGTGCTGTGCCGT-ATTTTTTTTTTTG-AGTTTTTA--G--C
489 CATGAAAAATAGAAAACGAGTC--GT-CT-TGCCATGA-AACTTCACGTGAAGGCTTAAGGGACC
*** * * * * * * ** ** * *
19491652 -TTAGT-TTTTTTGTGCATGCCAACAAAAAT-ACA--AGCA-TCACG-TCTACCAAGTTTGGGGC
549 ATT-GTATGAATT-TACAAGCC-ATAAAAATGGCATTGGCACGCA-GAAATATGAAG-AT-GTGC
* * * * * **** * ** **** * * * ** *
19491710 CAAAACTC-CTTTCAAAAAAAT--TTTAAAAAATTCCGCCCA-CTCGTTTCATC-GGTTGGCTTA
608 CTAAACCCACCTACCACCCTATCGATCCACGGCTT--GCGCATCCCGTCTC-TCTGGCCGGCGTA
** * * * * * * *
19491770 G-GCATAG---G---G-AGTTCATTACCAGTC--TAT-G-ATAGGACCGA-ACCGAGGGTT--GT
670 GTGC-CCGCCCGCCCGCCGCTCGTT-TC-GTCGGT-TGGCTTAGG--C-ATA-CG-GAGTTCATT
** * * * * * * *
19491820 GGCAG-C-ATGATC-GGCGGCATG-CAGA-GG--GC-G-ACCCGG-TC-G-ATC-C-CTG-GCTT
726 CCCAGTCTAAGATCAGAC--CA-GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG---
* * * ** ** * * * ** * * ****
19491870 GCGCATCCCACCCCTTTGGCCGGC-TGAGC-GCCCGCGCACTCGTTTCATGGGTTGA-CTTTGGC
785 GGGGA-CCCA-GCCGATCCCCGGCTTGCGCATCCCGC-CCCTC-TGGC--CGGCTGAGCGCCCGC
** ** * ***** * *
19491932 ATACAAAG-TTCATTCCCAGTC-TAAGCATACGGAGTTCATTCCCAGTCTAA
844 ACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19491982 G-AT-C-G-G---------A--C------C-G---A-ACTGAGGGTTGTGGCAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
19492021 CTTGGGCATGTGCTAGTGCCGTATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC---GC-T-GCCGGAGA
* * * * *
19492086 ACTTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCAGAGGGGTGTGCACACATGATGTG
126 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* * * *
19492150 CGATGGGTGCTGGTACTTTGCCCTTATATTTGCCCCCTATCCCTCAGCAAACCTCGAGAACTCGC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19492215 ACCCCGTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19492280 GGGGACACTTTTTTCAAAAGGTCACAAAATCATGTACACTTCGAGTTTTTAGTTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19492345 TGCATGCC-AAAAATATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
386 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
19492409 ATTGT-AAAAATTCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATATAAAACGAGTCATCT
451 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
19492473 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * ** *
19492538 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTGCGACCCTATCGATCCACGACAAGT
580 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
19492603 GCAACCCGCCTTTCTGGCCGACGTAGTGCCTGCCTGCTCGTCCGCCTGCTCGTTTCGTCGGTTGG
645 GCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CC-GCCCGCCCGCC-GCTCGTTTCGTCGGTTGG
** ** * **
19492668 CTTAGGTGTACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGCAGCGGCAGCAGGAT
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
** * * * * * *
19492733 CGATAGCACACAGAGGGGGAGCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGGTTG
770 CGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
**
19492798 AGCGCTTGCACGC-CGTTTCGTGGGTTGACTTAGG----C--A--T-A----C-G----A
835 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19492839 --AT------TTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19492896 CTCGGGCATGTGCTGGTGCCACATTTCTCTTCGTCGGGGCACCA---T--C-GCCGGAGAACTTG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGCTGCCGGAGAACCTG
* * * * *
19492955 ACCGGTGGTATTGGGGTTTCGACGAT--AGGGGGCC-GGGGGGTGTGCAG-ACATGATGTGCGAT
131 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGC-GCACATGATGTGCGAT
* *
19493016 GGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19493081 CCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
19493146 ACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAATTTTTGGCTGAATTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * * * ** *
19493211 CACCCACAAAAATACAAGGATCATGTCTACCAAGTTTGGTACCAAAACTCCTTCCGAAAAAAGTT
390 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
19493276 T-AAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATAATGAAAAATAGAAAACAAGTCGTCTTGCC
455 TAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
19493339 ATGACATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
19493404 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
584 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
19493469 CCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCATCCGCTCGTTTCGTCGATTGGCTTA
649 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-----CCGCTCGTTTCGTCGGTTGGCTTA
*** * * ** * * * ** *
19493534 AAAATCCAGAGTTCATTGTCAGTCCAAGATCATACCAAATTGAGGGTTGC-GCAGCAGGATCGGT
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
** * * * * *
19493598 AGCACATAGAGGGGGACCC-GACTGATCCCCGGCTTGCGTATCCCGCCCTTTTGGTCGGCTGAGC
774 AGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
19493662 GCCCACATGCTCGTTTCGTGGGTTGACTTTGGCATACGCAGTTCATTCCCAG--T--
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
19493715 G--TA---AG---A-T--C-G----A-A-CTG----GACCGAGGGTCACGGCAGCGCATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19493758 CTCGGGCATGTTCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTAGAGCAT-CATCGAAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-T--CGC-TGC--CGGAG
* ** * ** *
19493822 AACCTGACCGACGGCATTGACGTTCCGACGATCAAGGGGGCC-GGGGGGTGTGCACACATGATGT
125 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
* *
19493886 GCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19493951 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19494016 TGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTATT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19494081 GTGCGTGCCAACAAAAATGCAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAA
385 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
19494146 AATTTAAAAAAATCCTGAACCGCAAAAAGTTTCTAAAATCATGAAAAATAGAAAATGAGTCATCT
450 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19494211 TGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
19494276 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACTCACCTAGCACCCTATCGATCCAC-GATTAC
580 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19494340 GAATCCCGTATCTCTGGCCGGCATAGTGCCCGCCTGCTCGCCCGCCCGCTTGTTTCGTCGGTTGG
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C--C-CGCCCG-CCGCTCGTTTCGTCGGTTGG
* ** ** * *
19494405 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGATAGTAAGAT
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * ** * * * *
19494470 CAGCAGCATGCAGAGGGGGACCTGGCCGATCCCTGGCTTGTGCATCCCGCCCCTCTGTCCGACTG
770 CGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
19494535 AGTGCCCGCAGGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19494595 GCATGCGGAGTTCATTCCCAGTCTAGGATTGGATCGGACCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
19494660 CTTGGGCATGTGCTGGTGGCTCATTTTTCTTTGCCGGGGCACCATCATCGGAGCAT-CATCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC---GC-TGC--CGGAG
** * * * * * * * *
19494724 AATTTGATCGGCAGCATTGGGGTTCTGACGATCGAGGGGGACAAGGGGGTGTGCGCACATGATTT
125 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
* * * * * *
19494789 GCAATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCAAAAACTCG
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19494854 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19494919 TAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19494984 GTGCATGCCAACAAAAATACAAGGATCACTTTTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
385 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** *** *
19495049 AATTTAAAAAAATCCCAAACTACAAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCT
450 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19495114 TGCCATGAAACTACACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * * * *
19495179 ATTGGCCCATAGAAATATGGAGATGGGCTTAATCCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
19495244 GCATCCCGTCTCTCTGGTCGGCGTACTGCCCACCCGCCCGCCCACTCGTTTTGTCGGTTGGCTTC
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTA
* * *
19495309 GGCATACAGAGTTCATTCCCAGTCTAAGATCATACCAGATCGAGGGTTGC
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
19495359 ATTTTTCTTT
Statistics
Matches: 10759, Mismatches: 1721, Indels: 1077
0.79 0.13 0.08
Matches are distributed among these distances:
822 1 0.00
823 1 0.00
824 1 0.00
825 8 0.00
826 10 0.00
827 111 0.01
828 16 0.00
829 4 0.00
830 3 0.00
831 2 0.00
832 11 0.00
833 12 0.00
834 9 0.00
835 7 0.00
836 4 0.00
837 8 0.00
838 78 0.01
839 9 0.00
840 26 0.00
841 36 0.00
842 50 0.00
843 16 0.00
844 17 0.00
845 28 0.00
846 45 0.00
847 90 0.01
848 24 0.00
849 70 0.01
850 32 0.00
851 143 0.01
852 267 0.02
853 17 0.00
854 19 0.00
855 216 0.02
856 49 0.00
857 271 0.03
858 163 0.02
859 35 0.00
860 18 0.00
861 86 0.01
862 626 0.06
863 191 0.02
864 251 0.02
865 124 0.01
866 307 0.03
867 45 0.00
868 195 0.02
869 111 0.01
870 491 0.05
871 30 0.00
872 11 0.00
873 290 0.03
874 44 0.00
875 531 0.05
876 286 0.03
877 17 0.00
878 14 0.00
879 27 0.00
880 3 0.00
881 1 0.00
882 2 0.00
883 3 0.00
884 238 0.02
885 118 0.01
886 115 0.01
887 17 0.00
888 196 0.02
889 294 0.03
890 48 0.00
891 2 0.00
892 7 0.00
893 361 0.03
894 234 0.02
895 391 0.04
896 174 0.02
897 448 0.04
898 404 0.04
899 271 0.03
900 270 0.03
901 5 0.00
902 525 0.05
903 808 0.08
904 213 0.02
905 7 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGCTGCCGGAGAACCTG
ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19486711 original size:26 final size:26
Alignment explanation
Indices: 19486681--19486733 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19486671 GTTGACTTAG
*
19486681 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19486707 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19486733 G
1 G
19486734 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19487605 original size:26 final size:26
Alignment explanation
Indices: 19487569--19487621 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19487559 GTTGACTTAG
* *
19487569 GCATTCAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19487595 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19487621 G
1 G
19487622 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19488473 original size:26 final size:26
Alignment explanation
Indices: 19488437--19488489 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19488427 GTTAACTTAG
*
19488437 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19488463 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19488489 G
1 G
19488490 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19489373 original size:26 final size:26
Alignment explanation
Indices: 19489337--19489389 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19489327 GTGGACTTAG
*
19489337 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19489363 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19489389 G
1 G
19489390 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Done.