Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 111 of 195
Found at i:19490709 original size:902 final size:897
Alignment explanation
Indices: 19487990--19491333 Score: 4096
Period size: 895 Copynumber: 3.8 Consensus size: 897
19487980 GACTACCATG
* *
19487990 TTTGGGGCCAAAAATCC-TTCTGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAA
1 TTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* * *
19488054 TCAAGAAAAATAGAAAACGAGTCTTCTTGCCATGAAACTTCACGGGAAGGCTTAAG-GCACCATT
65 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAG-ACCATT
* * * *
19488118 GTATGAATTTACAAGCCATAGAAATTGTATTGGCACATAGAAATATGAAGATGTGCCT-AACCCA
129 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
* * *
19488182 CCTACCACCCTATCGATCCAC-GCTTGCGCATCTCGTCTCTCTGGCCGACGTAGGGCCCGCCTGT
194 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-
* * *
19488246 CCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAAGTTCATTCCTAGTCTAAGATCA
258 CCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAA-TTCATTCCCAGTCTAAGATCA
* * * ** * *
19488310 GACCAG-ACCGAGGGTTGCGGTAGCAGAATCGGCATTACACAGA-GGGGACTCGACCGATCCCCG
322 GACCAGCA-TGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
** * * * *
19488373 GATTACGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGG
386 GCCTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* *
19488438 CATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATTGGACCAGACC
451 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACC
* * * * *
19488503 GAGGGTTACGACAGCACACGCTGGGCTC-AGGCATGTGCTGGTGCCGCATTTCTCTTCATCGGGG
516 GAGGGTTGCGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGTCACATTTTTCTTCATCGGGG
* *
19488567 CACCATCGCCAAAGCATCGCCGGAGAGCCTGACTGACGGCA------TTCCGACGATCGGGGGGG
580 CACCATC-CC--AGCAT--CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * **
19488626 CCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGCCCCTAATATTGGCCAACT
640 CC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
19488691 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTGACAGGTTTGCT
703 ATCCCTCCTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
19488756 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACA
768 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
19488821 CTTCAAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAA
833 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGCATCACGTCTACCAAA
* * * * **
19488886 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAGCGCAAAACGTTTTGAAAAT
1 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* *
19488951 CATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAAGACCATTGT
66 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGT
* * ** * * **
19489016 ATGATTTTACAATCCATAAAAATGGCATTGGCATGCAGAAATATCATGATGTAACTAAACCCACC
131 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
19489081 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCCGCCAGCT
196 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCCGCCCGC-
* * * * *
19489146 CGCCCGCCTACTCGTTTCGTCGGCTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
259 CGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGA
* * * * * * * * * *
19489211 CCGGAATGAGGGTTACGGTAGCAGGATTGGTAGCACGTAAAAGGGGACCCGACCGATCCCCGGCT
324 CCAGCATGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCC
* * * * *
19489276 TGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCGCGTTTCGTGGGTGGACTTAGGCAT
389 TACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* * * *
19489341 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAATCTAAGATCGGATCGGACCAAG
454 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCGAG
* * * * * *
19489406 GGTTGCGCCAGCATATCCTGGGCTTGGGAATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACC
519 GGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACC
*
19489471 AT--C-G---CCGGAGAACCTGACCGACGGCATTGGGGTTGCGACGATCGGGGGGGCCGGGGGGC
584 ATCCCAGCATCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-
* *
19489530 TGCGGGCACATGATGTGCGATGGGTGCTGGTACTTGGGCCCTTATATTGGCCCCCTATCCCTCAC
648 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTC-C
* *
19489595 -CAAACCTCGAGAAATCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
711 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
19489659 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGT
776 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
19489724 TTTTAGCTGAATGTTTTTGTGCATACCAAAAAAAATACAACCATAATGTCTACCAAG
841 TTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGCATCACGTCTACCAAA
* *
19489781 TTTGGGACCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
1 TTTGGGGCCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* * *
19489845 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
65 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTG
* *
19489910 TATGAATTTACAAGCCAT-ACAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
130 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
* *
19489974 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTC
195 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-C
* * * * *
19490039 CACCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACAGAATTCATTCCTAGTCTAAGATTAGA
259 CGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGA
* * * * * * *
19490104 CTAGCCTGAGGGTTGCGGCAACAGCATCGACAGCATGCAGAGGGGGACCCAACCGATCCCCGGCC
324 CCAGCATGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCC
* * *
19490169 TACGCATCCCG-CCCTACTGGCCGGCTGAGCGCCCGCACGCTCATTTCCTAGGTTGACTTAGGCA
389 TACGCATCCCGCCCCT-CTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * * * * * *
19490233 TACGAAGTTCATTCCCAGTCTAAGTAAATGGAGTTCATTCCCAGTCTAATATCAGACCAGACCGA
453 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCGA
* * * ** *
19490298 GGGTTGCGATAGCACATGCTGGGCTCGAGCATTTACTGGTGTCACATTTTTCTTCGCCGGGTCAC
518 GGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCAC
* * * *
19490363 CATCACCGGAGCATCATCGAAGAACCTGACCGATGGCATTGGGGTTCCGACGGTCGGGGGGGCCA
583 CATC-CC--AGCATC--CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* ** **
19490428 GGGGGTGTGCACACATGATGTGCGATGCATGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCC
643 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
19490493 TCCTCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAG
708 TCCTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
19490558 TAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAATTGGTAACAAAATCTTGTACACTTTG
773 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
19490623 AGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGTATCACATCTACCAAT
838 AGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGCATCACGTCTACCAAA
** * *
19490683 TTTGGGGTTAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAAT
1 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* *
19490748 CATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGT
66 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGT
** * * * *
19490813 ATGAATTTATGAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATTTGCGTAAACCCACA
131 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* **
19490878 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGTG-CC-AAC-CCG
196 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCG
* * *
19490940 CCCGTCC-GCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
261 CCCG-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
19491004 C-GGATCGAGGGTTGTGGCAGCAGGATTGGCAGTACGTAGAGGGGGACCCGGCCAATCCCCGG-C
325 CAGCAT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCC
** * * * *
19491067 TTGGACATCTCGCCCTTCTGGCCGACAGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCA
389 TACG-CATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
19491132 TACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C-G----GACCGA
453 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCGA
* * * ** * *
19491171 GGGTTGTGACAGCACATGCTGGACT-TAGGCATGTGCTGGTGTCGTATTTTTCTACACCGGGGCA
518 GGGTTGCGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCA
* *
19491235 CCAT--C-G--T-CGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGG
582 CCATCCCAGCATCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
*
19491294 GTGTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCC
647 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
19491334 TGATCGTTTC
Statistics
Matches: 2112, Mismatches: 295, Indels: 116
0.84 0.12 0.05
Matches are distributed among these distances:
862 80 0.04
865 1 0.00
867 1 0.00
870 1 0.00
872 1 0.00
873 61 0.03
877 1 0.00
878 1 0.00
884 1 0.00
886 1 0.00
889 20 0.01
892 4 0.00
893 277 0.13
894 132 0.06
895 340 0.16
896 158 0.07
897 31 0.01
898 36 0.02
899 263 0.12
900 201 0.10
901 2 0.00
902 327 0.15
903 124 0.06
904 48 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCG
CCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACC
AGCATGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCCTA
CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCGAGGG
TTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCAT
CCCAGCATCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGCATCACGTCTACCAAA
Found at i:19491553 original size:26 final size:26
Alignment explanation
Indices: 19491517--19491569 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19491507 GTTGACTTAG
*
19491517 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19491543 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19491569 G
1 G
19491570 ATCGGACTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19491960 original size:26 final size:26
Alignment explanation
Indices: 19491930--19491982 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19491920 GTTGACTTTG
19491930 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
19491956 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
19491982 G
1 G
19491983 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:19493797 original size:862 final size:866
Alignment explanation
Indices: 19491956--19495358 Score: 4136
Period size: 862 Copynumber: 3.9 Consensus size: 866
19491946 CCCAGTCTAA
* * * ** *
19491956 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGTGGCAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
19492021 CTTGGGCATGTGCTAGTGCCGTATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA-CATCGGA-CA-CG--G-AGA
* *
19492086 ACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGAGGGGTGTGCACACATGATGTGC
125 ACTTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCC-GGGGGGTGTGCACACATGATGTGC
* * * *
19492151 GATGGGTGCTGGTACTTTGCCCTTATATTTGCCCCCTATCCCTCAGCAAACCTCGAGAACTCGCA
189 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19492216 CCCCGTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19492281 GGGACACTTTTTTCAAAAGGTCACAAAATCATGTACACTTCGAGTTTTTAGTTGAATTTTTTTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
19492346 GCATGCCAA-AAATATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
384 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
19492410 TTGTAAAAATTCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATATAAAACGAGTCATCTTG
449 TT-TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
19492475 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
513 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * * ** *
19492540 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTGCGACCCTATCGATCCACGACAAGTGC
578 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * * * *
19492605 AACCCGCCTTTCTGGCCGACGTAGTGCCTGCCTGCTCGTCCGCCTGCTCGTTTCGTCGGTTGGCT
643 ATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCACC-GCTCGTTTCGTCGGTTGGCT
** * ** * **
19492670 TAGGTGTACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGCAGCGGCAGCAGGATCG
707 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCAGGATCG
* * * * *
19492735 ATAGCACACAGAGGGGGAGCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGGTTGAG
771 GTAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GTCGGCTGAG
**
19492800 CGCTTGCACGC-CGTTTCGTGGGTTGACTTAG
835 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
19492831 GCATACGAATTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
19492896 CTCGGGCATGTGCTGGTGCCACATTTCTCTTCGTCGGGGCA-C-CATC-G-C-CGGAGAACTTGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCACATCGGACACGGAGAACTTGA
** * * *
19492956 CCGGTGGTATTGGGGTTTCGACGAT-AGGGGGCCGGGGGGTGTGCAGACATGATGTGCGATGGGT
131 CCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGT
* *
19493020 GCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
196 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
19493085 AAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACAC
261 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * **
19493150 TTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAATTTTTGGCTGAATTTTTTTGTGCACACC
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* **
19493215 CACAAAAATACAAGGATCATGTCTACCAAGTTTGGTACCAAAACTCCTTCCGAAAAAAGTTT-AA
391 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAA
* * * *
19493279 AAATCTCGAACCGCAAAAAGTTTCAAAAATAATGAAAAATAGAAAACAAGTCGTCTTGCCATGAC
455 AAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* *
19493344 ATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACA
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
19493409 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* ***
19493474 CTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCATCCGCTCGTTTCGTCGATTGGCTTAAAAAT
650 CTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCA-CCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * * * **
19493539 CCAGAGTTCATTGTCAGTCCAAGATCATACCAAATTGAGGGTTGCGCAGCAGGATCGGTAGCACA
714 ACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGCAGCAGGATCGGTAGCACA
* * * * * * *
19493604 TAGAGGGGGACCCGACTGATCCCCGGCTTGCGTATCCCGCCCTTTTGGTCGGCTGAGCGCCCACA
779 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GTCGGCTGAGCGCCCGCA
* *
19493669 TGCTCGTTTCGTGGGTTGACTTTG
843 CGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
19493693 GCATACGCAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTCACGGCAGCGCATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
19493758 CTCGGGCATGTTCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTAGAGCATCATCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA-C-ATCG-G-A-CA-CGGAGA
* **
19493823 ACCTGACCGACGGCATTGACGTTCCGACGATCAAGGGGGCCGGGGGGTGTGCACACATGATGTGC
125 ACTTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGTGTGCACACATGATGTGC
* *
19493888 GATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
189 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19493953 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19494018 GGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTATTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
19494083 GCGTGCCAACAAAAATGCAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAA
384 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
19494148 TTTAAAAAAATC-CTGAACCGCAAAAAGTTTCTAAAATCATGAAAAATAGAAAATGAGTCATCTT
449 TTT-AAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
*
19494212 GCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * * *
19494277 TTGGCATGCAAAAATATGAAGATGTGCCTAAACTCACCTAGCACCCTATCGATCCAC-GATTACG
577 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
19494341 AATCCCGTATCTCTGGCCGGCATAGTGCCCGCCTGCTCGCCCGCCCGCTTGTTTCGTCGGTTGGC
642 CATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC-ACCGCTCGTTTCGTCGGTTGGC
* * ** * * *
19494406 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGATAGTAAGATC
706 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG-CAGCAGGATC
* * ** * * * *
19494471 AGCAGCATGCAGAGGGGGACCTGGCCGATCCCTGGCTTGTGCATCCCGCCCCTCTGTCCGACTGA
770 GGTAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGT-CGGCTGA
* * * *
19494536 GTGCCCGCAGGCTCATTTCATGGGTTGACTTAG
834 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
19494569 GCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAGGATTGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G---A-----A--C-----------CGGAC
* * * * * * ***
19494634 CGAGGGTTGCAGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGGCTCATTTTTCTTTGCCGGGG
40 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
* * * * *
19494699 CACCATCATCGGAGCATCATCGGAGAATTTGATCGGCAGCATTGGGGTTCTGACGATCGAGGGGG
105 CACCA-CATC-G-G-A-CA-CGGAGAACTTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGG
** * * * * *
19494764 ACAAGGGGGTGTGCGCACATGATTTGCAATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTG
163 -CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
19494829 TCCCTCATCAAACCTCAAAAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
227 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
19494894 CCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACAC
292 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
19494959 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACT-TTTACCAAG
357 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-TGTCTACCAAG
* * **
19495023 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCAAACTACAAAAAGTTTCAAAAAT
421 TTTGGGGCCAAAACTCCTTCCGAAAAAATTT-AAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
* * * *
19495088 CATGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTACACATGAAGGCTTAAGGGACCATTGT
485 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * * * *
19495153 ATGAATTTACAAGCCATAAAAATGGCATTGGCCCATAGAAATATGGAGATGGGCTTAATCCCACC
550 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
19495218 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTACTGCCCACCCGCCC
615 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCC
* * *
19495283 GCCCA---CTCGTTTTGTCGGTTGGCTTCGGCATACAGAGTTCATTCCCAGTCTAAGATCATACC
680 GCCCACCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
*
19495345 AGATCGAGGGTTGC
745 AGACCGAGGGTTGC
19495359 ATTTTTCTTT
Statistics
Matches: 2160, Mismatches: 314, Indels: 83
0.84 0.12 0.03
Matches are distributed among these distances:
861 72 0.03
862 573 0.27
863 62 0.03
864 32 0.01
865 2 0.00
866 1 0.00
867 2 0.00
868 1 0.00
869 1 0.00
871 2 0.00
872 4 0.00
873 29 0.01
874 4 0.00
875 464 0.21
876 272 0.13
877 2 0.00
878 1 0.00
881 1 0.00
884 1 0.00
889 1 0.00
891 1 0.00
900 62 0.03
901 1 0.00
902 107 0.05
903 422 0.20
904 40 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (866 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCACATCGGACACGGAGAACTTGA
CCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAA
AATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCACCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGCAGCAGGATCGGTAGCACACA
GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGTCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAG
Found at i:19494603 original size:26 final size:26
Alignment explanation
Indices: 19494569--19494619 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19494559 GTTGACTTAG
19494569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19494595 GCATGCGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
19494620 GGATTGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19496177 original size:26 final size:26
Alignment explanation
Indices: 19496141--19496192 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19496131 TTGACTTAGA
19496141 CATACGAAGTTCATTCCCAGACTAAG
1 CATACGAAGTTCATTCCCAGACTAAG
* *
19496167 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGACTAAG
19496193 ATAGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGACTAAG
Found at i:19498863 original size:26 final size:26
Alignment explanation
Indices: 19498814--19498864 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19498804 TTGACTTAGG
*
19498814 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAATCTAAC
* * *
19498840 CATATGGAGTTCATTTCGAATCTAA
1 CATACGGAGTTCATTCCCAATCTAA
19498865 GATCGGATCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAC
Found at i:19499804 original size:26 final size:26
Alignment explanation
Indices: 19499768--19499820 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19499758 GTTGGCTTAG
19499768 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
19499794 GCATGCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19499820 G
1 G
19499821 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19500888 original size:185 final size:185
Alignment explanation
Indices: 19500563--19500901 Score: 491
Period size: 185 Copynumber: 1.8 Consensus size: 185
19500553 GGCAGCATGC
** *
19500563 AGAGAGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAACGCCCGAAC
1 AGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGAAC
* * * *
19500628 GCTCGTTTCATGGGATGACTTAGGCATATAGAGTTCATTCCCAATCTAAGCATATGGAGTTCATT
66 GCTCATTTCATGGGATGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCACACGGAGTTCATT
* ** *
19500693 GCTTGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCAGTAGCACGT
131 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCAGTAGCACGT
* * * *
19500748 AGAGGGGGACCCGACCGATCCCCGTG-TTGCGCATCCCGCCCCTCTGGCCTGCTGAGCGCCCGCA
1 AGAGAGGGACCCGACCGATCCCCG-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGAA
* * * *
19500812 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCACACGGAGTTCAT
65 CGCTCATTTCATGGGATGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCACACGGAGTTCAT
19500877 TCCCAGTCTAAGATCGGACCAGACC
130 TCCCAGTCTAAGATCGGACCAGACC
19500902 AAAGGTTGCG
Statistics
Matches: 134, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
185 133 0.99
186 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (185 bp):
AGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGAAC
GCTCATTTCATGGGATGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCACACGGAGTTCATT
CCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCAGTAGCACGT
Found at i:19502624 original size:26 final size:26
Alignment explanation
Indices: 19502585--19502638 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
19502575 TTGGTTGACT
* * *
19502585 TAGGCATACGGAGTTTATTCCCAGTC
1 TAGGAATACAGAGTTCATTCCCAGTC
*
19502611 TAGGAATACAGAGTTCATTCCTAGTC
1 TAGGAATACAGAGTTCATTCCCAGTC
19502637 TA
1 TA
19502639 AGATCAGATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
TAGGAATACAGAGTTCATTCCCAGTC
Found at i:19505277 original size:25 final size:26
Alignment explanation
Indices: 19505242--19505293 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19505232 GTCGACTTAG
*
19505242 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19505267 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19505293 G
1 G
19505294 TTTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19505614 original size:898 final size:889
Alignment explanation
Indices: 19501329--19506029 Score: 5476
Period size: 898 Copynumber: 5.3 Consensus size: 889
19501319 TTGCAAAAAT
* * * * * * *
19501329 CATGAAACTTCATGTAAAGGCTTAAGGGACCATTATATGAATTTACAAGCCCTAAAAATGGCTTT
1 CATGAAACTTCACGTGAAGCCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
19501394 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
66 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
* * * *
19501459 TCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCGCCTGCCCGCTCGTTTCGTCAGTTGG
131 TCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCACCCG-C-CC-GCCCGCTCGTTTCATCGGTTGG
* * * * * *
19501524 CTTAGGCATACAGAGTTTATTCCTAGTCTAAGATCAGACCAGACCAAAGGTTGCGATAGCAGGAT
189 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTT-TG-TAGCA-GAT
* * * * *
19501589 -TGGCAGCACACAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCACCTCTGGCCAGC
251 CT---AGCACGCAGAGGGGGACCCGACT-GATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGC
* * * *
19501652 TGAGCGCCCGAACGTTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCTAGT-TAAGCA
312 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGCA
** ** * * * **
19501716 TATGGAGTTCATTCCTGGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTC
376 TACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAGCACATGCTGGGCTC
* * * * ** *
19501781 GGGAATGTGTTGGTGTCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCGGATAACC
441 GGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA-CGTCGGAGCATCG-C-GAGAACC
* * * * ** * *
19501846 TGGCCGACGGCATTGGGGTTCCGGTGATCGGGGGGG-CGGAGGGGTGTGCGCACATGATTTGTGA
503 TGACCGGCGACATTAGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGA
* * *
19501910 TGGGTGCTAGG-ACTTGGCCGTTATATTGGCCCCCTATCCCTCA-CAAACCTCGAGAACTCTCA-
567 TGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* *
19501972 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
631 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
19502037 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTTGCTGAATTTTTTTGTG
696 GGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** * * * *
19502102 CATGCCAACAAAAATACAAGGATCACGCCTACCAACTTTGGGGCCAAAAATCCTTCCGAAAAAAT
761 CATGCCAACAAAAATACAAGGATCCCATCTACCAAGTTTAGGGCCAAAACTCCTTTCGAAAAAAT
* * * ** *
19502167 TTTAAAAAATCTCGAAC-CCTAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGAGTCGTCTTG
826 TTAAAAAAATC-CAAACTGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
19502231 C
889 C
* * * *
19502232 CATGAAACTTCACGTGAAGGCTTAAA-GGATCGTTGTGTGAATTTACAAGCCATAAAAATGGCAT
1 CATGAAACTTCACGTGAA-GCCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19502296 TGGCACACAAAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGACTTGCGC
65 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * *
19502361 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCAGCTCGTTTCGTCAGTTGGCT
130 ATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CAC--CCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * * * *
19502426 TAGGCATACAGAGTTCATTCTCAGTCTAAGATTAGACCGGCTTGAGGGTTGTGGTAGCAGGATCG
191 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTT-T-GTAGCA-GATC-
* * * * * * * *
19502491 ACAGCACGCAGAGGGAGACCCGACCGATCCCTAACTTGTGCATC-CTGGCCCTCTGGCCGACTGA
252 -TAGCACGCAGAGGGGGACCCGACTGATCCCCAGCTTGCGCATCTC-GCCCCTCTGGCCGGCTGA
* * * * * * * *
19502555 ACACCCGCACTCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAGGAATAC
315 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATAC
* * * * *
19502620 AGAGTTCATTCCTAGTCTAAGATCAGAT-AGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
379 AGAGTTCATTCCCAGTCTAAGATCGGATCA-GACTGAGGGTTACGGCAGCACATGCTGGGCTCGG
* *
19502684 GCATGTGCTGGTCCCGCATTTTTCTTCGTCGGGGCACCA--TC---G--T--C--G-----GA-C
443 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCACGTCGGAGCATCGCGAGAACCTGACC
* *
19502732 -G-G-CATTAGGGTTCCGACGATCGGGGGGG-CGGGAGGCTGTGCGCACATGATGTGCGGTGGGT
508 GGCGACATTAGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGT
*
19502793 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGATAACTCACACCCCCTT
572 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
* *
19502858 -AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTTTGAAATGGGGACAC
637 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * *
19502922 TTTTTTCAAATAGTCATAAAATCTTGTACACTTTGAGTTTTTAGCTGAGTTTTTTTGTGCATGCC
702 TTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
19502987 AATAAAAATACAAGGAT-CAACTCTACCAAGTTTAGGGCCAAAACTCC-TCCTGAAAAAATTTAA
767 AACAAAAATACAAGGATCCCA-TCTACCAAGTTTAGGGCCAAAACTCCTTTC-GAAAAAATTTAA
** *
19503050 AAAAATCTTGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
830 AAAAATC-CAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
19503111 CATGAAACTTCACGTGATGGCTTAAA-GGACCGTTGTATGAATTTACAAGCCATAAAAATGGCAT
1 CATGAAACTTCACGTGA-AGCCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * **
19503175 TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTTGACTTGCGC
65 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * ** * *
19503240 ATCCCGTATCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCAG--CGGATCAGACCGGCTGGCTTA
130 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTC--ATCGGTTGGCTTA
* * * *
19503303 GGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGCT-G-AGTGTTTCGGGAGCAGGATCTA
193 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAG-GTTT--GTAGCA-GATCT-
* * * ** * * *
19503366 CAGCACACAGAGGGGGACCTGGCCAATCCCCAGCTTGCGCATCTCACCCCTCTGGTCGACTGAGC
253 -AGCACGCAGAGGGGGACCCGACTGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGC
* * * *
19503431 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCCAAGCATACAG
317 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACAG
* * * * * *
19503496 AGTTCATTACCAGTTTAAGATCGGATCAGACCGAGAGTTGCAGCAGCACATGCTGGGCTCGGGCA
381 AGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * *
19503561 TGTGCTTGTGCCGGC-TTTTTCTTCGTCGGGGCACCA--TC--A-C--CG-GATAACCTGACCGG
446 TGTGCTGGTGCC-GCATTTTTCTTCATCGGGGCACCACGTCGGAGCATCGCGAGAACCTGACCGG
** * * * *
19503617 CGGTACTGGGGTTCCGATGATCGGGGGGGTCGGGTGGGGTGTGCGCACATGATGTGC-ATTGGGT
510 CGACATTAGGGTTCCGACGATCGGGGGGG-CCGG-GGGGTGTGCGCACATGATGTGCGA-TGGGT
* *
19503681 GCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAA-TCCACACCCCCT
572 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT-CACACCCCCT
* * *
19503745 TAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGAACA
636 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * **
19503810 TTTTTTTCAAATGGTCACAAAATCTTATACACATCGAGTTTTTAGCCAAATTTTTTTGTGCATGC
701 CTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
19503875 CAA-AAAAATACAAGGATCACATCTACCAAGTTTAGGTCCAAAACTCCTTTCGAAAAAATTTAAA
766 CAACAAAAATACAAGGATCCCATCTACCAAGTTTAGGGCCAAAACTCCTTTCGAAAAAATTTAAA
* * *
19503939 AAAATCCCAAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAGCGAGTCGTCTTGC
831 AAAAT-CCAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
19503999 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-T
1 CATGAAACTTCACGTGAAGCCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
19504063 GGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGA-TACTTGCGC
66 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGACTTGCGC
*
19504127 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCT
130 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCG----CTCGTTTCATCGGTTGGCT
* * ** * *
19504192 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGGCCAAGGGTTGT-G--G--C-AGC
191 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTTGTAGCAGATCTAGC
* * **
19504250 ATGCAGAGGGGGACCCGA-TCGATCCCCAGCTTGTGCATCTCGCCCCTCTGGCTAGCTGAGCGCC
256 ACGCAGAGGGGGACCCGACT-GATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
19504314 CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCACACGGAGT
320 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGCATACAGAGT
* * * ** *
19504379 TCATTCCCAGTCCAAGACCGGACCAGACTGAGGGTTACGGCAGCACATGCTCAGCTAGGGCATGT
384 TCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGT
* * * *
19504444 GCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGAC
449 GCTGGTGCCGCATTTTTCTTCATCGGGGCACCA-CGTCGGAGCATC-GC-GAGAACCTGACCGGC
* * * ** *
19504509 GCCATTGGGGTTTCGACGATCGATGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCT
511 GACATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
19504574 GGTACTTAGCCCTTATATTGGCCCCC-ATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAA
575 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
* * *
19504638 GAGCACTTGAGATTTTACAGGTTTGCTGCTAGTAACCATTAAAGTGTCTGAAATGGGGACACTTT
640 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
19504703 TTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACC
705 TTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
19504768 AAAAATTCAAGGATCCCATCTACCAAGATTAGGGCCAAAACT-CTTTCCGAAAAAAGTTT-TAAA
770 AAAAATACAAGGATCCCATCTACCAAGTTTAGGGCCAAAACTCCTTT-CGAAAAAA-TTTAAAAA
*
19504831 AATCTAGAA-TCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
833 AATCCA-AACT-GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * **
19504889 CATGAAACTTCACGTGAACCCTAAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATTTCATT
1 CATGAAACTTCACGTGAAGCCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
19504954 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
66 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
* * ** * * * * *
19505019 TCCTGTCTCTTTGGCCCACATAGTGCCCACTCGCCCACCCGCTCGTTTTATCAGTTGGCTTAGGC
131 TCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * *
19505084 ATACGAAGTTCATTCCCAGTCTAAGATCTGACCAGATCGAAGGTTATAATAGCAAGATCTGTAGC
196 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTT-T-GTAGC-AGATC--TAGC
* * *
19505149 ACGCAGAGGGGGACCCGACTGATTCCCCGGCTTGCGCATC-CTGCCCCTCTAGCCGGTTGAGCGC
256 ACGCAGAGGGGGACCCGACTGA-TCCCCAGCTTGCGCATCTC-GCCCCTCTGGCCGGCTGAGCGC
*
19505213 CCGCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACAGAGT
319 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACAGAGT
* * ** * *
19505278 TCATTCCCAGTCTAAGTTTGGATTGGACTGAGGGTTACGGCACCACATGCTGGGCTCGAGCATGT
384 TCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGT
* * *
19505343 GCTGGTGCCTCATTTTTCTTCATCGGGACACCACGTCGGAGCATCGCCAGAGAAACTGACCGGCG
449 GCTGGTGCCGCATTTTTCTTCATCGGGGCACCACGTCGGAGCATCG-C-GAGAACCTGACCGGCG
* *
19505408 ACATTAGGTTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
512 ACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
19505473 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
577 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
19505538 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
642 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
19505603 TCAAATGGTCACAAAATCTTATACACTTTC-ATTTTTTAGCTGAATTTTTTTGCGCATGCCAACA
707 TCAAATGGTCACAAAATCTTATACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
19505667 AAAATACAAAGA-CCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
771 AAAATACAAGGATCC-CATCTACCAAGTTTAGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAA
19505731 TCCAAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
835 TCC-AAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
19505787 CATGAAACTTCACGTGAAGGCCT-AAGGGACCATCGGATGAATTTGCAAGCCATAAAAATGGTAT
1 CATGAAACTTCACGTGAA-GCCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19505851 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCAC
65 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * * *
19505916 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGGCCGTCCGCCCACTCATTTCGTCGGTTGGCT
130 ATCCCGTCTCTCTGGCCGGCGTAGTGCCC-AC---CCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * *
19505981 TAGGCATACGGAG-TCATTCCGACTCTAAGATCGGACCAGACCGAGGGTT
191 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTT
19506030 GCAGCAGCAC
Statistics
Matches: 3272, Mismatches: 409, Indels: 236
0.84 0.10 0.06
Matches are distributed among these distances:
873 6 0.00
874 210 0.06
875 60 0.02
877 5 0.00
878 89 0.03
879 390 0.12
880 194 0.06
881 1 0.00
882 3 0.00
883 3 0.00
884 1 0.00
885 3 0.00
886 23 0.01
887 154 0.05
888 254 0.08
889 281 0.09
890 215 0.07
891 180 0.06
892 2 0.00
893 5 0.00
894 1 0.00
895 1 0.00
896 1 0.00
897 63 0.02
898 440 0.13
899 137 0.04
900 244 0.07
901 134 0.04
902 35 0.01
903 133 0.04
904 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
CATGAAACTTCACGTGAAGCCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTTGTAGCAGATCTAGCACGCA
GAGGGGGACCCGACTGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACAGAGTTCATTCC
CAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCATCGGGGCACCACGTCGGAGCATCGCGAGAACCTGACCGGCGACATTAGGG
TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCCCATCTACCAAGTTTAGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCCAAACTGCA
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
Found at i:19507783 original size:26 final size:26
Alignment explanation
Indices: 19507747--19507820 Score: 139
Period size: 26 Copynumber: 2.8 Consensus size: 26
19507737 GTTGACTTAG
19507747 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
*
19507773 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
19507799 GCATACGGAGTTCATTCCCAGT
1 GCATACGGAGTTCATTCCCAGT
19507821 CTAAAATCAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTTTAA
Found at i:19509210 original size:26 final size:26
Alignment explanation
Indices: 19509174--19509226 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19509164 GTTGACTTAG
*
19509174 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19509200 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19509226 G
1 G
19509227 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19511695 original size:26 final size:26
Alignment explanation
Indices: 19511665--19511717 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19511655 GTTTACTTAG
*
19511665 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19511691 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19511717 G
1 G
19511718 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19512619 original size:26 final size:26
Alignment explanation
Indices: 19512589--19512641 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19512579 GTTTACTTAG
* *
19512589 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19512615 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19512641 G
1 G
19512642 GTCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19512639 original size:924 final size:922
Alignment explanation
Indices: 19510855--19513379 Score: 4088
Period size: 924 Copynumber: 2.7 Consensus size: 922
19510845 CTGGGCTCGA
* * * **
19510855 GCATGTGCTGCTGTAGCATTTTTCTTCGCCAAGGCACCATCGCCGGAGCATCATCGGAGAACCTG
1 GCATGTGCTGCTGCAGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * * *
19510920 ACAGACGGCATTGGGGTTTCGACGATCGGGGGTGCCGAGGGGTGTGCGCACATGACGTGCGATGG
66 ACCGGCGGCATTAGGGTTTCGACGATCGAGGGTGCCGAGGGGTGTGCGCACATGATGTGCGATGG
* * ** *
19510985 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAGCTCACACCCCC
131 GTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* * *
19511050 TCAAATATCATTTGAGATTTTACAGGTTTGCTGCC-CTACCCATTAAAGTGCCTGAAATGGGGAC
196 TCAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGAC
* * *
19511114 ACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTAAATTTTTTTTTGCATG
261 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
19511179 CCAACAAAAATACAAGGATCACGT-CACCAAGTTTGGGGCC-AAAGTGCCTTCCAAAAAAATTTT
326 CCAA-AAAAATATAAGGATCACGTCCACCAAGTTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTT
* *
19511242 AAAAAATCCCAAATCGA-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
389 AAAAAATCCCAAA-CCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
19511306 TGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTATAAGCCATAAAAATTGCATTGG
453 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
19511371 CACGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGACTTGCGCATC
518 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
* *
19511436 CCGTCTCTCTGGCCGACATAATGCCTGCACGTCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTTG
583 CCGTCTCTCTGGCCGACATAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTTG
19511501 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGAT
648 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGAT
* * ** *
19511566 CGACAGTACGCACAGGGGGACCCGGCCGATCCCCAGCTTGTGTATCCCGCCCCTCTGGCCCACTG
713 CGACAGCACGCACAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCCGCCCCTCTGGCCCACTG
19511631 AGCGCCCACACGCTCGTTTCATGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
778 AGCGCCCACACGCTCGTTTCATGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
19511696 CGGAGTTCATTCCCAATCTAAGATCGGATCAGACCAAGAGTTGTGATAGTAGGATTGGCAGCACG
843 CGGAGTTCATTCCCAATCTAAGATCAGATCAGACCAAGAGTTGCGACAGTAGGATTGGCAGCACG
19511761 CAGAGGGGGACTCAG
908 CAGAGGGGGACTCAG
*
19511776 GCATGTGCTGCTGCAGCATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCGCCGGAGAACCTG
1 GCATGTGCTGCTGCAGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * *
19511841 ACCGGCGGCATTAGGGTTTCGACGATTGAGGGCGCCGGGGGGTGTGCGCACATGATGTGCGATGA
66 ACCGGCGGCATTAGGGTTTCGACGATCGAGGGTGCCGAGGGGTGTGCGCACATGATGTGCGATGG
*
19511906 GTGCTGCCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
131 GTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
19511971 TCAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGAC
196 TCAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGAC
*
19512036 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATG
261 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
19512101 CCAAAAAATATATAAGGATCACGTCCACCAAGTTTAGGGCCAAAAAATCCTTCCGAAAAAATTTT
326 CCAAAAAA-ATATAAGGATCACGTCCACCAAGTTTGGGGCC-AAAAATCCTTCCGAAAAAATTTT
** * * *
19512166 AAAAAATCCCAAACCACAAAAAGTTTTGAAAGTCGTGAAACATAGAAAATGAGTCGTCTTGCCAT
389 AAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
19512231 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
454 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
19512296 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCC
519 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
* *
19512361 CGTCTCTCTGGCTGACATAGTGCCTGCACGCCCGCCCGCCCGCTCATTTCATCAGTTGGCTTTGG
584 CGTCTCTCTGGCCGACATAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTTGG
*
19512426 CATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATC
649 CATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATC
** * *
19512491 GGTAGCATGCACAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGACTGA
714 GACAGCACGCACAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCCGCCCCTCTGGCCCACTGA
* *
19512556 GCGCCCGCACGCTCGTTTCATGGGTTTACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATAC
779 GCGCCCACACGCTCGTTTCATGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
19512621 GGAGTTCATTCCCAATCTAAGGTCAGATCAGACCAAGGGTTGCGACAGTAGGATTGGTAGCACGT
844 GGAGTTCATTCCCAATCTAAGATCAGATCAGACCAAGAGTTGCGACAGTAGGATTGGCAGCACGC
19512686 AGAGGGGGACTCAG
909 AGAGGGGGACTCAG
19512700 GCATGTGCTGCTGCAGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
1 GCATGTGCTGCTGCAGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* *
19512765 ACCGGCGGCATTAGGGTTCCGACGATCGAGGGTGCCGAGGGGTGTGCGCACATGATGTGTGATGG
66 ACCGGCGGCATTAGGGTTTCGACGATCGAGGGTGCCGAGGGGTGTGCGCACATGATGTGCGATGG
*
19512830 GTGCTGGCATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCC
131 GTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
19512894 TCAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGAC
196 TCAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGAC
*
19512959 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATG
261 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
19513024 CCAAAAAAAATATAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTCA
326 CC-AAAAAAATATAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
** *
19513089 AAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
390 AAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
19513154 AAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCAGAAAAATGGCATTGGCA
455 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
19513219 CGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
520 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* * * * ** * * * * **
19513284 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTTCCGACCGTTCGTTTCGTCGGTTGGCTTACGC
585 GTCTCTCTGGCCGACATAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTTGGC
* *
19513349 ATACAGAGTTCATTCCCAATCTAAGATCAGA
650 ATACAGAGTTCATTCCTAGTCTAAGATCAGA
19513380 CCGGACCGAG
Statistics
Matches: 1482, Mismatches: 115, Indels: 13
0.92 0.07 0.01
Matches are distributed among these distances:
921 212 0.14
922 388 0.26
923 180 0.12
924 698 0.47
925 4 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (922 bp):
GCATGTGCTGCTGCAGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
ACCGGCGGCATTAGGGTTTCGACGATCGAGGGTGCCGAGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
TCAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAATATAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
AAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
TCTCTCTGGCCGACATAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTTGGCA
TACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGA
CAGCACGCACAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCCGCCCCTCTGGCCCACTGAGC
GCCCACACGCTCGTTTCATGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAATCTAAGATCAGATCAGACCAAGAGTTGCGACAGTAGGATTGGCAGCACGCAG
AGGGGGACTCAG
Found at i:19514300 original size:709 final size:711
Alignment explanation
Indices: 19512699--19514817 Score: 3131
Period size: 709 Copynumber: 3.0 Consensus size: 711
19512689 GGGGGACTCA
* *
19512699 GGCATGTGCTGCTG-CAGCATTTTTCTTCGTC-AGGGCACCATCGCCGGAGCATCGCCGGAGAAC
1 GGCATGTGCTGATGCCA-CATTTTTCTTCGTCGA-GGAACCATCGCCGGAGCATCGCCGGAGAAC
* * * *
19512762 CTGACCGGCGGCATTAGGGTTCCGACGATCGAGGGTGCCGAGGGGTGTGCGCACATGATGTGTGA
64 CTGACCGGCGGCATTGGGGTTCCGACGATCGAGGG-GTCGGGGGGTGTGCGCACATGATGTGCGA
* *
19512827 TGGGTGCTGGCATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
128 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
19512892 CCTCAAAGAT-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGG
193 CCTTAAAG-TGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19512956 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGC
257 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
19513021 ATGCCAAAAAAAATATAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
322 ATGCCAAAAAAAATA-AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * *
19513086 TCAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
386 TTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19513151 ATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCAGAAAAATGGCATTG
451 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
19513216 GCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
516 GCACGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
**
19513281 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTTCCGACCGTTCGTTTCGTCGGTTGGCTTA
581 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--C-TT-GTTTCGTCGGTTGGCTTA
* * * * * *
19513346 CGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGACAGTACATGCTGG
642 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGG
19513411 GCTCG
707 GCTCG
* ** * * *
19513416 GGCATGTGCTGATGTCACATTTTTCTTCACCGA-GACACCATCACCGGATCATCGTCGGAGAACC
1 GGCATGTGCTGATGCCACATTTTTCTTCGTCGAGGA-ACCATCGCCGGAGCATCGCCGGAGAACC
* * * *
19513480 TAACCGACGACATTGGGGTTCCGACAATCG-GGGGACTCGGGGGGTGTGCGCACATGATGTGCGA
65 TGACCGGCGGCATTGGGGTTCCGACGATCGAGGGG--TCGGGGGGTGTGCGCACATGATGTGCGA
* * *
19513544 TGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACC
128 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
19513609 CCTTAAAGTGCATTTGAGATTTTACTGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
193 CCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
19513674 ACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTCTGCA
258 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
19513739 TGCCAAAAAAAATAAGACGATCACGTCTACC-AGTTT-GGGCCAAAAATCCTTCCAAAAAAATTT
323 TGCCAAAAAAAATAA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * *
19513802 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCA
387 TAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
19513867 TGAAACTTCACGT-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
452 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
19513931 CACGTAGAAATATGAAGATGTGCCT-AGCCCACCTACCACCCTATTGATCCACGGCTTGCGCATC
517 CACGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
19513995 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTCGCTTAGGCAT
582 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCAT
19514060 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCG
647 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCG
* ** * * * * * *
19514125 GGCATGTGCTGGTGCCATGTTTTTCTTCGTCGAGGAACCGTTGCCGAAGCATCACCGAAGAATCT
1 GGCATGTGCTGATGCCACATTTTTCTTCGTCGAGGAACCATCGCCGGAGCATCGCCGGAGAACCT
19514190 GACCGGCGGCATTGGGGTTCCGACGATCGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATG
66 GACCGGCGGCATTGGGGTTCCGACGATCGAGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATG
19514255 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCC
* ** * *
19514320 CTTAAAGAGCATTTGAGATTTTACAGGTTTAATGCCAGTAGCCATTAAAGTGTTTGAAATTGGGA
194 CTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
19514385 CAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
259 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
19514449 GCCAACAAAAATAAAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAATTT
324 GCCAAAAAAAAT-AAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAAATTT
*
19514514 TAAAAAATCCCGAACAGCGAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
387 TAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* ** *
19514579 TGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATTTCATTGC
452 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
19514644 CATGTAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTAGCGCATC
517 CACGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * **
19514709 CCGTTTCTCTGGCCGGCGTAGT--------GCCCGCCCGCTCGTTTCGTCACTTGGCTTAGGCAT
582 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
19514766 AAGGAGTTCATTCCCAGTCTAAGAGCGGACCAGACTGAGGGTTGTAGCAGCA
647 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCA
19514818 GGATTGGCAG
Statistics
Matches: 1268, Mismatches: 117, Indels: 45
0.89 0.08 0.03
Matches are distributed among these distances:
706 77 0.06
708 2 0.00
709 321 0.25
710 79 0.06
711 13 0.01
712 87 0.07
713 143 0.11
714 126 0.10
715 99 0.08
716 11 0.01
717 307 0.24
718 3 0.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (711 bp):
GGCATGTGCTGATGCCACATTTTTCTTCGTCGAGGAACCATCGCCGGAGCATCGCCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGACGATCGAGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCT
TAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAAATAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
AAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
TAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCG
Found at i:19516341 original size:716 final size:718
Alignment explanation
Indices: 19514954--19516436 Score: 2103
Period size: 716 Copynumber: 2.1 Consensus size: 718
19514944 TAAGCGTACA
* * *
19514954 GAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGC
* ** * * * *
19515019 ATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGCCTGAGAACCTAAC
66 ATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCTGAGAACCTAAC
* * * * * *
19515084 CGGCGGCATTAGGGTTCCGACAATCGGAGTGGCCGGGGGGGTGTGCGCTCATGATGTGCGATGGG
131 CGACAGCATTAGGGTTCCGACAATCGGAGGGGCCAGGGGGGTGTACGCACATGATGTGCGATGGG
* * * *
19515149 TGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTTAAGAACTCCCACCCCCT
196 TGATGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
*
19515214 TAAAGAGCATTTGAGATTTTACAAGCTTACTGCCAGTAGCCACTAAAGTATCTGAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTACAAGCTTACAGCCAGTAGCCACTAAAGTATCTGAAATGGGGACA
*
19515279 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGC
** * * * *
19515344 CAAAAAAATACGAGGATCATGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
391 CAAAAAAATAAAAGGATCATGACCACCAAGCTTGGGGCCAAAAATCCCTCCAAAAAAATTTTAAA
* * * **
19515409 AAATCTCAAACCGCGAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
456 AAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
19515474 ACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATG
521 ACGTCACGCGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
19515539 CAGAAATATGAAGATGAGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCTCGT
586 CAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGT
* *
19515604 CTCTCTGGCCGACGCAGTGCCCGCCCG-CCGCCCGCCCACTCATTTCGTCGAATGGCTTACGCAT
651 CTCTATGGCCGACACAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCGAATGGCTTACGCAT
19515668 ACG
716 ACG
* * * * *
19515671 GAGTCCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGC
* * *
19515736 ATGTTCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCTGAGAATCTGAC
66 ATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCTGAGAACCTAAC
* * *
19515801 CGACAGCATTGGGGTTCCGACGATCGG-GGGGCCAGGGGGGTGTACGCACATGATGTGCGGTGGG
131 CGACAGCATTAGGGTTCCGACAATCGGAGGGGCCAGGGGGGTGTACGCACATGATGTGCGATGGG
* *
19515865 TGTTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
196 TGATGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* * * * *
19515930 TAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTACAAGCTTACAGCCAGTAGCCACTAAAGTATCTGAAATGGGGACA
* *
19515995 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTTTTTGTGGATGC
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGC
* * **
19516060 CAACAAAATAAAAGGATCA-GAACCACCAAGTTTGGGGCCAAAAATCCCTCTGAAAAAATTTTAA
391 CAAAAAAATAAAAGGATCATG-ACCACCAAGCTTGGGGCCAAAAATCCCTCCAAAAAAATTTTAA
* ** *
19516124 GAAATCCCAAACAGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTGTTGCCATGA
455 AAAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * *
19516189 AACGTCATGCGAAGGCTTAAGGGGCCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCAC
520 AACGTCACGCGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
19516254 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATC-CT
585 GCAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTC-
* * ** ** * * * *
19516318 GTCTCTATGGCCGGCATAGTGCCCGCTTGCCCGCCCGCCCGTTCGTTTCGTCTATTGGCTTAGGC
649 GTCTCTATGGCCGACACAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCGAATGGCTTACGC
*
19516383 ATATG
714 ATACG
* * * *
19516388 GAGTTCATTCCCAGTCTAGGATCGAACCATG-TCGAGGGTTGCGGCAGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGTGGCAGCA
19516437 GGATCAGCAG
Statistics
Matches: 669, Mismatches: 93, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
715 2 0.00
716 459 0.69
717 207 0.31
718 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (718 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGC
ATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCTGAGAACCTAAC
CGACAGCATTAGGGTTCCGACAATCGGAGGGGCCAGGGGGGTGTACGCACATGATGTGCGATGGG
TGATGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAAGCTTACAGCCAGTAGCCACTAAAGTATCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGC
CAAAAAAATAAAAGGATCATGACCACCAAGCTTGGGGCCAAAAATCCCTCCAAAAAAATTTTAAA
AAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACGTCACGCGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGT
CTCTATGGCCGACACAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCGAATGGCTTACGCAT
ACG
Found at i:19518040 original size:889 final size:882
Alignment explanation
Indices: 19515676--19522514 Score: 7947
Period size: 889 Copynumber: 7.8 Consensus size: 882
19515666 ATACGGAGTC
* * * * *
19515676 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTT
1 CATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * *
19515741 CTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCTGAGAATCTGACCGACA
65 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG-A--A-C-------CTGACC-ACG
* * * *
19515806 GCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTACGCACATGATGTGCGGTGGGTGTTG
118 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
19515870 GTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
183 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
19515935 AGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
248 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
** * *
19516000 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTTTTTGTGGATGCCAAC-
313 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * * * *
19516064 AAAATAAAAGGATCA-GAACCACCAAGTTTGGGGCCAAAAATCCCTCTGAAAAAATTTTAAGAAA
378 AAAATACAAGGATCACG-TCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAA
* ** ** * * *
19516128 TCCCAAACAGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACG
441 TCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* * * *
19516193 TCATGCGAAGGCTTAAGGGGCCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
506 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
19516258 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCTGTCTC
571 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * ** *
19516323 TATGGCCGGCATAGTGCCCGCTTGCCCGCCCGCCCGTTCGTTTCGTCTATTGGCTTAGGCATATG
636 TCTGGCCGGCGTAGTG-CC-C--GCCC-CCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACG
* * * ** * *
19516388 GAGTTCATTCCCAGTCTAGGATCGAACC-ATGTCGAGGGTTGCGGCAGCAGGATCAGCAGCACGT
696 GAGTTCATTCCCAGTCTAAGATTGGACCGAACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * ** * * *
19516452 AGAGGAGGACCC-AGCCGATCCCCAGCTTGCACATCCCAACCCTCTGGCTGGCTGAGCGCCCGTA
760 AGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
** * ** * *
19516516 CATTCGTTTCGTCGGTTGACTTAGGCATATAGAGTTCACTCCCAGTCTAAGCGTACGAAGTT
824 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-AATC-TA-GAAGTT
* ** * * * **
19516578 CATTCCCAGTCTAAGATCAGACC-GAACCGAGCATTGCGACAGCATATGATGGGCTCAAGCATGT
1 CATT-CCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* *
19516642 GCTGGTGCCGCAGTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGC
64 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G-----CCGGAGAACCTGACC-AC
* * * *
19516707 GGCATTGGGGTTCCGATGATCGGCGGGG-C-TGGGGGTGTGCACACATGATGTGCGATGGGTGCT
117 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
19516770 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCTTTAAA
182 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
19516835 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTCAAATGGGGACACTTT
247 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TT
* *
19516900 TTTTCGAATGGTCAAAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCTCA
311 TTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGC-CA
* * * * *
19516965 AGAAAAATACAAGGATCACGTCTACCAAG-TTGGGGTCAAAAATCTTTCCAAAAAAATTTAAAAA
375 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAA
* * ** * *
19517029 AATCCC-AAACTGCATAAAGTTTCAAAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
439 AATCCCGAACCT-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* * *
19517093 ACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAGAAATGGCATTGGCATG
503 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * *
19517158 TAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCTACGACTTGCGTATCCCGT
568 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * ** * *
19517223 CACTCTGGCCGGGGTAGTGCCCGCCCACCCACCTGCTCATTTTTTCGGTTGGCTTAGGCGTACAG
633 CTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * * *
19517288 AGTTGATTCCCAGTCTAACATTGGACCGAACTGAGAGTTGTGGCAGCAAGATTGACAGCAAGCAG
697 AGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * * *
19517353 TGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGATTGAGCGCCCGCACGC
762 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGC
* *
19517418 TCGTTTCATGGGTTGACTTAGGCATACGGAGATCATTCCCAGTCAAATCATAGAAAGTT
827 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-AATC-TAG-AAGTT
* * *
19517477 CATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGC
1 CATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * *
19517542 TAGTGTTC-CATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCATCGGCATTGGGGTT
66 TGGTG-CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCA-CGGCATTGGGGTT
* *
19517606 CCGACGATCGGGGGGGCCGGGGGGTGTGTGTGCACATGAAGTGCGATGGGTGCTGGTACTTGGCC
129 CCGACGATCGGGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
19517671 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAG
193 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
19517736 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATAGT
258 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
19517801 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAG
323 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * *
19517866 GATCATGTCTACCAAGTTTGGGCCCAAAACTCCTTCCAAAAAATTTTTAAAAAATCTCGAACCTC
388 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-TTTTAAAAAATCCCGAACCTC
** * * * *
19517931 AAAAAGTTTTGAAAATCTTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGG
452 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
*
19517996 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGA
517 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
19518061 TGTGCCTAAACCCACCTTCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
582 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * **
19518126 TGGTGCCCGCCCACCCGCCTGCTCATTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAAC
647 TAGTGCCCGCCC-CCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * **
19518191 CTAAGGTTGAACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCTTGCAGAGGGGGACCCGACC
711 CTAAGATTGGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
** *
19518256 GATCCCCGGCTTGCGCATCTGGCCCGTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
776 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
19518321 GACTTAGGCATACTGAGTTCATTCCCAG----TCT--AAG--
841 GACTTAGGCATACGGAGTTCATTCCCAGTCAATCTAGAAGTT
*
19518355 -A-T-C-G----A-AT-TG----GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
1 CATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * *
19518406 TGGTGCCGCATTTTTCTTCGCCTGGGCACCATCGCCGGAGAACCTGACCGATGGCATTGGGGCTC
66 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACC-ACGGCATTGGGGTTC
* * *
19518471 CGACGATC-GGGGGGCC-GGAGGGTGTGTGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
130 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
19518534 TATATTGGCCCCCTATCTCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
195 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
19518599 TTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT-CGGACACCTTTTTCAAATGGTCA
260 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
19518663 CAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGTATGCCAAGAAAAATACAAGGA
325 CAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
19518728 TCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAA
390 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCTCAA
** *
19518793 AAAGTTTTGAAAATCAT-AAAGAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGGGAAGGC
454 AAAGTTTCAAAAATCATGAAA-AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGC
* **
19518857 TTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACATAGAAATATGAAGAT
518 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * *
19518922 GTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGCGCACCCCGTGTCTCTGGCCGGCGT
583 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* *
19518987 AGTGCCCG-----C-CC-ACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
648 AGTGCCCGCCCCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** ** * * * * * *
19519045 AAGATCAGATTGGA-TCGAGGGTTCCGGTAGCAGGATCGGCAGCACGTAGAAGGGGGACCCAACA
713 AAGATTGGACCGAACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG-AGGGGGACCCGACC
* * * * * *
19519109 GATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGATTGAGTGCCCGGACGCTCATTTCGTGGGTT
776 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
19519174 GACTTAGGCATATGGAGTTCATTCCCAG----TCT--AAG--
841 GACTTAGGCATACGGAGTTCATTCCCAGTCAATCTAGAAGTT
* *
19519208 ------A-TC--AGATC-G---A-ACCGAGGGTTGTGGCAGCATATGCTGGGCTCGGGCATGTGC
1 CATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * *
19519259 TGGTGCCACATTTTTCTTCATCGGGGCACCATTGTC---G-----G---A--GCATTGGGGTTCC
66 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCACGGCATTGGGGTTCC
*
19519311 GACGATCGGGGGGGCC-GGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
131 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * * * *
19519375 ATATTAGCTCCCTCTCCCTCATCAAACCTCGAGAACCCACACCCTCTTAAAGAGCATTTGATATT
196 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* **
19519440 TTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCAC
261 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
19519505 AAAATCTTGTACACTTCAACTTTTTAGCTG-ATGTTTTTTGTCCATGCCAACAAAAA-AGCAAGG
326 AAAATCTTGTACACTTCAAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATA-CAAGG
* * * * *
19519568 ATCACGTCTACCTAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAATCGT-
389 ATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAA-CCTC
* * *
19519632 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCATGCCATTAAACTTCACGTGAAGG
452 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
* * *
19519697 CTTAAGGGACCACTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
517 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * ** *
19519762 TGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCTATCTCTCTGGCCGACG
582 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * *
19519827 TAGTGCCCG---CTCGCCTGCCCGTTTCGTCGGTTGGCTTAGGGATACGGAGTTCATTCCTAGTC
647 TAGTGCCCGCCCCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * * * * * * *
19519889 TAAGATTGGATTGGA-TCGAGAGTTGCAGCAGCAGGGTTGGCAGCACGCAGAGCGGGACCCGGCC
712 TAAGATTGGACCGAACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
* * * *
19519953 GATCCCCGGCTTGAGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTT
776 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
19520018 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAACCATACGGAGTT
841 GACTTAGGCATACGGAGTTCATTCCCAGTC-AATC-TA-GAAGTT
** * *
19520063 CATTCCCAGTCTAAGATCCCACCAGACCGAGGGTTGCGGTAGCACATTCTGGGCTCGGGCATGTG
1 CATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
19520128 CTGGT-TCGCATTTTTCTTC-ACTGGGGCACCATCGCC-GAGAACCTAATCGATGGCATTGGGGT
65 CTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGAACCTGA-CCACGGCATTGGGGT
* *** *
19520190 TTCGGTAATC-----GG--GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
128 TCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
19520248 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCGTTAAAGAGCATTTGAG
193 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
19520313 ATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGT
258 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
19520378 CACAAAATCTTGTACACTTCAAGTTTTAAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAG
323 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
*
19520443 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAAACGT-
388 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCG-AACCTC
*
19520507 AAAAAGTTTCAAAAATCATGAGAAAA-AGAAAACGAGTCATCGTGCCATGAAACTTCACGTGAAG
452 AAAAAGTTTCAAAAATCATGA-AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
* * *
19520571 GCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAGG
516 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
** * * * * *
19520636 ATGCACCTAAACCGACCTACCACCCTATCGATCCACAGCTTGCACATCCCATCTCTCTGGCCGAC
581 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
19520701 GTAGTGCCTGCCCTCCCGCCTGCCCACTCGTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATTC
646 GTAGTGCCCGCCC-CCCGCCTG----CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** ** *
19520766 CCAGTCTAAGATTGGACC-AGACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAGAGGGGGAC
706 CCAGTCTAAGATTGGACCGA-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * * *
19520830 CCGACCGATCCCCGGGTTACGCATCCCGCCCCTCTTGCCTG-TTGAGCGCCTGCACGATCGTTTC
770 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GACTGAGCGCCCGCACGCTCGTTTC
19520894 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG----TCT--AAG--
834 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAATCTAGAAGTT
* * * *
19520935 -A-T-C-G-----GACCGGA-C--A--GAGGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGC
1 CATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
*
19520986 TGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGG
66 TGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G---C--CGGAGAACCTGACC-ACGG
* ** * *
19521051 TATTGGGGTTTTGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGG
119 CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * *
19521116 TACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCAAGAGCTAACACCCCCTTAAAGA
184 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * **
19521181 GCATTTGAGATTTTAGAAGTTTGCTATCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
249 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
19521246 TCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
314 TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* **
19521311 AAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAAGCCTTCCAAAAAAATTTTAAAAAATC
379 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATC
* * ** * * *
19521376 CCAAAGCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCATCTAGCCATGAAACTT
443 CCGAA-CCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* * *
19521440 CACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACGTAGA
507 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * *
19521505 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATTCCGTATCT
572 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * ** * *
19521570 CTGGCCGGCATAGTGCTCGCCCGTCGCCCGCCTGCCCGCTTGTTTCATCGGTTGACTTAGGCATA
637 CTGGCCGGCGTA--G-T-GCCCG-C-CCC-CC-GCCTGCTCATTTCGTCGGTTGGCTTAGGCATA
* ** * *
19521635 CGGAGTTCATTCCCAATCTAAGATTGGACC-AGACCAAGGGTTGCGACAGCAGGATCGGTAGCAC
694 CGGAGTTCATTCCCAGTCTAAGATTGGACCGA-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * * *
19521699 GCAGAGGGGGACCCGACTGATCCCCTGCTTGTGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCGA
758 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
** * * * * *
19521764 ACTATCATTTCATGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGGAGTT
823 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-AATC-TA-GAAGTT
* * * *
19521827 CATTCCTAGTCTAAGATCGGACGAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATATA
1 CATTCC-AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * *
19521892 CTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGCCGAAGCATCGCCGAATAA
65 CTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C----CATCGCCG--G-A-----G-A-AC
* * * *
19521957 CTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGG-CTGGGGGGTGTGCGCACATGATGTGTG
109 CTGACC-ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
19522021 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
173 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
**
19522086 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCATTAAAGTGTCTGAAATGG
238 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19522151 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
303 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
* * **
19522216 CATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCACAACTCCTTATGAAAAAAT
368 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCAAAAAAT
** * ** *
19522281 TTTAAAAAATCCAAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAACGAGTCGTCTTG
432 TTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGTCATCTTG
* * *
19522346 GCATGAAACTTCACGGGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
496 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19522411 TGGCACGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
561 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
19522476 ATCCTGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGC
626 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGC
19522515 AGAGGGGGAC
Statistics
Matches: 5153, Mismatches: 589, Indels: 382
0.84 0.10 0.06
Matches are distributed among these distances:
839 19 0.00
840 150 0.03
841 305 0.06
842 7 0.00
843 1 0.00
844 92 0.02
845 84 0.02
849 1 0.00
850 2 0.00
851 1 0.00
852 79 0.02
853 176 0.03
854 1 0.00
857 37 0.01
858 22 0.00
859 5 0.00
860 320 0.06
861 149 0.03
862 9 0.00
863 11 0.00
864 103 0.02
865 6 0.00
867 2 0.00
868 3 0.00
869 29 0.01
870 70 0.01
871 2 0.00
874 3 0.00
875 210 0.04
876 256 0.05
877 272 0.05
878 193 0.04
879 7 0.00
880 6 0.00
881 180 0.03
882 20 0.00
883 173 0.03
884 7 0.00
885 4 0.00
886 1 0.00
887 43 0.01
888 36 0.01
889 460 0.09
890 154 0.03
892 1 0.00
893 1 0.00
894 1 0.00
895 2 0.00
897 1 0.00
898 79 0.02
899 183 0.04
900 3 0.00
901 152 0.03
902 177 0.03
903 223 0.04
904 21 0.00
905 3 0.00
907 59 0.01
908 1 0.00
909 3 0.00
910 6 0.00
911 4 0.00
912 4 0.00
913 10 0.00
914 2 0.00
915 4 0.00
916 312 0.06
917 187 0.04
918 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (882 bp):
CATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCACGGCATTGGGGTTCC
GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCTCAAAA
AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
GCCCGCCCCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATTGGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCAATCTAGAAGTT
Found at i:19520062 original size:26 final size:26
Alignment explanation
Indices: 19520026--19520076 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19520016 TTGGCTTAGG
19520026 CATACGAAGTTCATTCCCAGTCTAAC
1 CATACGAAGTTCATTCCCAGTCTAAC
*
19520052 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
19520077 GATCCCACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAC
Found at i:19521824 original size:26 final size:26
Alignment explanation
Indices: 19521790--19521840 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19521780 TTGATTTAGG
19521790 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
* *
19521816 CATATGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
19521841 GATCGGACGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:19525724 original size:712 final size:711
Alignment explanation
Indices: 19524344--19525812 Score: 2252
Period size: 712 Copynumber: 2.1 Consensus size: 711
19524334 AATGTAAGCG
* * * *
19524344 TACGGAGTTCATTCCCAGTTTAAGATCGGATCGGATCGAGGGTTATGGAAGCACATCCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGAAGCACATCCTGGGCTC
* * * *
19524409 GGGCATGTGCTGGTGCTACTTTTTTCTTCATCGGGGCACCATCCCCGAAGCATCGTCGGAGAACC
66 GGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCCCCGAAGCATCCTCGGAGAACC
** * ** * * *
19524474 TGATCGGTGGCATTGGGGTTCCGGCAATCGGGGGGGCCGAGGGGGGGTGTGCGCACATGATGTGT
131 TGATCGACGGCATTGGGGATCCAACAATCGGGGGGGCC--GGGGGGGTGCGCGCAAATGATGTGC
19524539 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
19524604 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
19524669 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTCGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTCGT
* * *
19524734 GCATGCCAAAAACAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
389 GCATGCCAAAAACAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAA
* * * *
19524799 TTTTAAAAAATCTCGAACCGCAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
19524864 CCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19524929 TGGCACATAGAAATACGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
584 TGCCACACAGAAATACGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
19524994 ATCCCGTCTTTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCTTCGGTTGGCTTAGG
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGG
19525059 CA
710 CA
* * * *
19525061 TACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGAAGCACATCCTGGGCTC
* * *
19525126 GGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCACT-GGAGAAC
66 GGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCCCCGAAGCATC-CTCGGAGAAC
* **
19525190 CTGATTGACGGCATT-GGGATCCAATGATCGGGGGGGCC-GGGGGGTGCGCGCAAATGATGTGCG
130 CTGATCGACGGCATTGGGGATCCAACAATCGGGGGGGCCGGGGGGGTGCGCGCAAATGATGTGCG
*
19525253 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
195 ATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
19525318 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-G
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19525382 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTCGTG
* *
19525447 CATGCCAACAGA-AATACAAGGATAATGTCTACCAAGTTTGGGG-CACAAACTCATTCCAAAAAA
390 CATGCCAA-AAACAATACAAGGATAACGTCTACCAAGTTTGGGGCCA-AAACTCATTCCAAAAAA
* * *
19525510 TTTTTTAAAAATC-CTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCT
453 ATTTTAAAAAATCTC-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCT
* * *
19525574 TGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTTTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19525639 ATTTCCACACA-AAATTATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 ATTGCCACACAGAAA-TACGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
19525703 TGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
19525768 A
711 A
* * * * *
19525769 TACGGAGTTCATTTCTAGTCTTAGATTGGACCAGACCGAGGGTT
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
19525813 GCGGCAGTAG
Statistics
Matches: 686, Mismatches: 61, Indels: 19
0.90 0.08 0.02
Matches are distributed among these distances:
708 62 0.09
709 2 0.00
710 1 0.00
711 6 0.01
712 321 0.47
713 151 0.22
716 18 0.03
717 124 0.18
718 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (711 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGAAGCACATCCTGGGCTC
GGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCCCCGAAGCATCCTCGGAGAACC
TGATCGACGGCATTGGGGATCCAACAATCGGGGGGGCCGGGGGGGTGCGCGCAAATGATGTGCGA
TGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTCGTGC
ATGCCAAAAACAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAATT
TTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCC
ATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
CCACACAGAAATACGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
Found at i:19525955 original size:26 final size:26
Alignment explanation
Indices: 19525925--19525977 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19525915 GTTGACTTAG
19525925 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19525951 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19525977 G
1 G
19525978 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19526512 original size:883 final size:889
Alignment explanation
Indices: 19525058--19526715 Score: 2392
Period size: 883 Copynumber: 1.9 Consensus size: 889
19525048 GTTGGCTTAG
* *
19525058 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCACATGCTAGG
19525123 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCAT-------GCAT-ACTGGAGA
* * *
19525188 ACCTGATTGACGGCATTGGGATCCAATGATCGGGGGGGCCGGGGGGTGCGCGCAAATGATGTGCG
123 ACCTGATCGACGGCATTGGGATCCAACGATCGGGGGGGCCGGGGGGTGCACGCAAATGATGTGCG
* * **
19525253 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
188 ATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACAC
*
19525318 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
253 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGG
19525383 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
318 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
19525448 ATGCCAACAGAAATACAAGGATAATGTCTACCAAGTTTGGGGCACAAACTCATTCCAAAAAATTT
383 ATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCACAAACTCATTCCAAAAAATTT
* ** *
19525513 TTTAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCC
448 TTAAAAAATCCTAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCC
* * * *
19525578 ATGAAACTTCACGTGAAGGCTTAAGGGATCATTTTATGAATTTACAAGCCATAAAAATGGCATTT
513 ATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
19525643 CCACACA-AAATTATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
578 CCACACAGAAA-TATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
19525707 TCCCGTCTCTCTGGCCGG-T-GT-AG-TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
642 TCCCGTCTCTCTGGACGGCTAGTCAGCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * *
19525768 ATACGGAGTTCATTTCTAGTCTTAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGTCGG
707 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGATCGGTCGG
19525833 ACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
772 ACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
19525898 GCACGCTGGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCACGCTGGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19525951 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTCCGATAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCACATGCTAGG
* * *
19526016 CTCGAGG-ATGTGCTGGTGCCGCATTTTTCTTC-GCTGGGGCACCAT-CAT-C-GGAGAACCTTA
66 CTCG-GGCATGTGCTGGTGCCGCATTTTTCTTCATC-GAGGCACCATGCATACTGGAGAACCTGA
** * * * ** * * *
19526076 TCGGTGGCATTGGGGTTCCGACGAT-TGGGGGGTTGGGGGGTGTACGCACATGATGTGTGATGGG
129 TCGACGGCATT-GGGATCCAACGATCGGGGGGGCCGGGGGGTGCACGCAAATGATGTGCGATGGG
* *
19526140 TGTTGGCACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCTCT
193 TGCTGGCACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCT
19526205 TAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACA
* *
19526270 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCTTGC
322 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
19526335 CAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGC-CAAAACTCCTTCCGAAAAAA-TTTT
387 CAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCAC-AAACTCATTCC-AAAAAATTTTT
* * ** * ** *
19526398 AAAAAAT-CTCGAACCACAAAAGGTTTTGAAAATCGTGAAAAATAAAAAACGTGTCGTCTTGCCT
450 AAAAAATCCT-AAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCA
19526462 TGAAACTTCACG-GAAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
514 TGAAACTTCACGTG-AAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* ** *
19526526 GCATGCAGAAATATGAAGATGTGCCTAAACCAACGTACCACCCTATCGATCCACGGCTTGCGCAT
578 CCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
19526591 CGCGTCTCTCTGGACGGCTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
643 CCCGTCTCTCTGGACGGCTAGT--CAG-CCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
*
19526656 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGTAGGAT
705 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGAT
19526716 TGGTAGCACG
Statistics
Matches: 678, Mismatches: 71, Indels: 35
0.86 0.09 0.04
Matches are distributed among these distances:
882 170 0.25
883 305 0.45
884 10 0.01
885 5 0.01
888 1 0.00
890 88 0.13
892 1 0.00
893 96 0.14
894 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATGCATACTGGAGAACCTGATC
GACGGCATTGGGATCCAACGATCGGGGGGGCCGGGGGGTGCACGCAAATGATGTGCGATGGGTGC
TGGCACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATAACGTCTACCAAGTTTGGGGCACAAACTCATTCCAAAAAATTTTTAAAAAA
TCCTAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACACAG
AAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGACGGCTAGTCAGCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGATCGGTCGGACGTAGAGG
GGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTGG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19527597 original size:26 final size:26
Alignment explanation
Indices: 19527567--19527619 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19527557 GTTGACTTAG
*
19527567 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19527593 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19527619 G
1 G
19527620 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19528438 original size:26 final size:26
Alignment explanation
Indices: 19528402--19528454 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19528392 ATTGACTTAG
*
19528402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19528428 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19528454 G
1 G
19528455 ATTGGATCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19529000 original size:835 final size:834
Alignment explanation
Indices: 19527389--19529032 Score: 2489
Period size: 835 Copynumber: 2.0 Consensus size: 834
19527379 CCGCCTGCTT
* *
19527389 GTTTCATCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCTATGATAGGACCTAACCGAGGGT
1 GTTTCATCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGAACCGAGGGT
* * *
19527454 TACGGCAGCAGGATCGGCAACACGCAGAGGGGGACCCGACTGATCCTCGACTTGCGCATCCCGCC
66 TACGGCAGCAGGATCGACAACACGCAGAGGGGGACCCGACTGACCCCCGACTTGCGCATCCCGCC
* * * * * *
19527519 CCTCTGGCCAGTTGAGCGCCTGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
131 CCTCTGGCCAGCTGAGCACCCGCACGCTCATTTCATCGATTGACTTAGGCATACGGAGTTCATTC
* *
19527584 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCA
196 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGCACCAAGGGTTGCAGCAGCA
* * * ** * * *
19527649 CATGCTGGGCTTAGGCATGTGCTGGTGCCAGATTTTTCTTCGTCGGGGCACCATTATCGGAGCAT
261 CATGCTGGGCTGAGGCATGTGCTGGGGCCACATTTTTCTTCACCGAGGCACCATCATCAGAGCAT
19527714 CACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGTGCCGGGGGGGTGTGCGCA
326 CACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGT-CCGGGGGGGTGTGCGCA
* *
19527779 CATGATGTGCGATGGGTGCTGGTACTGGGCCCTTATGTTGGCCCCGTATCCCTCATCAAACCTTG
390 CATGATGTGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCG
* * * **
19527844 AGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
455 AGAACTCACACCCCTTAAAAAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAACCATTAAAACG
* * *
19527909 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTAAA
520 TATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTAAA
* *
19527974 TTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCT
585 TTGTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCT
*
19528039 TCCGAAAAAATTTTAAAAAATCTCGAACAGGAAAAAGTTTCAAAAATCCTAAAAAATAGAAAACG
650 TCCAAAAAAATTTTAAAAAATCTCGAACAGGAAAAAGTTTCAAAAATCCTAAAAAATAGAAAACG
*
19528104 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTCACAAGCCATA
715 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTAAAGGGACCATCGTATGAATTCACAAGCCATA
19528169 AAAATGGCATTGGCACATAGAAATATGAATTCACAAGCCACCCGCCCGCCCGTTC
780 AAAATGGCATTGGCACATAGAAATATGAATTCACAAGCCACCCGCCCGCCCGTTC
* * * *
19528224 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA-GACCGGACTGAGGG
1 GTTTCATCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGAACCGAGGG
* * * * *
19528288 TTACGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGA-TCGACCCCCGGCTTGCGTATCCCG
65 TTACGGCAGCAGGATCGACAACACGCAGAGGGGGACCCGACT-GACCCCCGACTTGCGCATCCCG
*
19528352 CCCCTCTGGCC-GACTGAGCACCCGCACGCTCATTTCGTCGATTGACTTAGGCATACGGAGTTCA
129 CCCCTCTGGCCAG-CTGAGCACCCGCACGCTCATTTCATCGATTGACTTAGGCATACGGAGTTCA
* * * *
19528416 TTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGCTCTAAGGGTTG-TGAC
193 TTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGCACCAAGGGTTGCAG-C
*
19528480 AGCACATGCTGGGCTCGA-GCATGTGCTGGGGCCACATTTTTCTTCACCGAGGCACCATCGTCAG
257 AGCACATGCTGGGCT-GAGGCATGTGCTGGGGCCACATTTTTCTTCACCGAGGCACCATCATCAG
* * *
19528544 AGCATCACCGGAGAACCTGACCGGCT-GCTTTTGGGTTCCGGTGATCGAGGGGT-CGAGGGGGGT
321 AGCATCACCGGAGAACCTGACCGG-TGGCATTGGGGTTCCGATGATCG-GGGGTCCG-GGGGGGT
* * *
19528607 GTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGG-CCCTTATCCCTCATCA
383 GTGCGCACATGATGTGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCGTATCCCTCATCA
19528671 AACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAACCA
448 AACCTCGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAACCA
19528736 TTAAAACGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTT
512 TTAAAACGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTT
* * * *
19528801 TAGCTGAATTGTTTTGTGCATGCC-AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
577 TAGCTAAATTGTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCA
* * * * *
19528865 AAAATCCTTCCAAAAAAATTTTAAAAAAATC-CTGAACCGTAAAAGGTTTCAAAAATCGTGAAAA
642 AAAATCCTTCCAAAAAAATTTT-AAAAAATCTC-GAACAGGAAAAAGTTTCAAAAATCCTAAAAA
* * * *
19528929 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTAAAGGGACCATTGTTTGAATTT
705 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTAAAGGGACCATCGTATGAATTC
19528994 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
770 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
19529033 GATGTGCCTA
Statistics
Matches: 729, Mismatches: 69, Indels: 22
0.89 0.08 0.03
Matches are distributed among these distances:
834 94 0.13
835 627 0.86
836 8 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.25
Consensus pattern (834 bp):
GTTTCATCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGAACCGAGGGT
TACGGCAGCAGGATCGACAACACGCAGAGGGGGACCCGACTGACCCCCGACTTGCGCATCCCGCC
CCTCTGGCCAGCTGAGCACCCGCACGCTCATTTCATCGATTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGCACCAAGGGTTGCAGCAGCA
CATGCTGGGCTGAGGCATGTGCTGGGGCCACATTTTTCTTCACCGAGGCACCATCATCAGAGCAT
CACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGTCCGGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGA
GAACTCACACCCCTTAAAAAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAACCATTAAAACGT
ATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTAAAT
TGTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTT
CCAAAAAAATTTTAAAAAATCTCGAACAGGAAAAAGTTTCAAAAATCCTAAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTAAAGGGACCATCGTATGAATTCACAAGCCATAA
AAATGGCATTGGCACATAGAAATATGAATTCACAAGCCACCCGCCCGCCCGTTC
Found at i:19531115 original size:26 final size:26
Alignment explanation
Indices: 19531079--19531131 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19531069 GTTGACTTAG
*
19531079 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
19531105 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
19531131 G
1 G
19531132 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:19532263 original size:75 final size:75
Alignment explanation
Indices: 19532136--19532288 Score: 270
Period size: 75 Copynumber: 2.0 Consensus size: 75
19532126 GGGGTGTGCG
* *
19532136 CACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCACCAAACCT
1 CACATGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCT
19532201 CGAGAACTCA
66 CGAGAACTCA
* *
19532211 CACATGATGTGAGATGGGTACTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCT
1 CACATGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCT
19532276 CGAGAACTCA
66 CGAGAACTCA
19532286 CAC
1 CAC
19532289 CCCCTTAAAG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (75 bp):
CACATGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCT
CGAGAACTCA
Found at i:19535214 original size:875 final size:869
Alignment explanation
Indices: 19532902--19537478 Score: 5537
Period size: 877 Copynumber: 5.2 Consensus size: 869
19532892 CGTTTTGTCG
** * * **
19532902 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCAAATTGAGGGTTGCGGCAGC
1 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * ** * * *
19532967 AGGATCGGCGGCACGCAGAGGAGGACTAGGTCGATCCCCGGCTTGCACATCCCGCCCCTTTAGCC
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
** * * *
19533032 GATTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGTCATACGAAGTTCATTCCCAGTCTAA
131 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19533097 GATCGGTCCAGACGGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTT
196 GATCGGTCAAGACGGAAGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTT
* * * * *
19533162 TTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACTGGCGGTATTGGGGTCCCG
261 TTCTTTGTCGGGGCACCATCG-CCGAGCATC-ACGGAGAACCTGACCGGCGGTATTGGGGTTCCG
* * * * * *
19533227 ATGATCGGGGGACCAGGGGGTGTGCACACAAGATGTGCGATGGGTGATGGTACTTGGCAATTATA
324 ACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATA
19533292 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
389 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
19533357 CAGGTTTGCTACCAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
454 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
19533422 ATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCAAGCCAACAAAAATACAAGGATCAC
519 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** * *
19533487 ATCTACCAAGTTTGACGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CCAAACCGCAAAAAG
584 GTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAG
* *
19533551 TTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAG
649 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
** * * *
19533616 CTACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCAAGCAAAAATATGAAGATGTGCC
714 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * * *
19533681 AAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTTTCTCTGGCCGACGTAATGC
779 TAAACCCACCTACCACCCTATC-ATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGC
* * * *
19533746 CCGCCCGCCCATCAGCTCATTTCATCA
843 CCGCCCGCCCACCCGCTCATTTCGTTA
* * * * *
19533773 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGGACCGAGGGTTACGGCAAC
1 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * * * * ** * * *
19533838 AGGATCGACAGGACGCAAAGGGGTACCTGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCA
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
** * * * *
19533903 GGCTGAATGCCCGTACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAATCTAA
131 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19533968 GATTGAACTGAA-AC--AAGGGTTGCGGCAGCACATGCTAGGCTC-GAGCATGTGCTGGTGCCAC
196 GATCG--GTCAAGACGGAA-GGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGC
* ** * *
19534029 ATTTTTGTTCATCGAGGCTCCAT---C---C--C-CGGAGAACCTGACCGGCGGTATTGGGGTTC
257 ATTTTTCTTTGTCGGGGCACCATCGCCGAGCATCACGGAGAACCTGACCGGCGGTATTGGGGTTC
* ** ** ** *
19534085 CGATGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTATGATGGGTGCTCCTACTTGGCCCTT
322 CGACGATCGGGGGG-CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTT
** * * * *
19534150 ATATTGGCCCAATATCCCTCATCAAACCTCAAGAACTCACACTCCCTGAAAGAACATTTGAGATT
386 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
19534215 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCAC
451 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
19534280 AAAATCTAGTACACTTCGAGTTTTTAGC-GAAATTATTTTGTGCAAGCCAACAAAAATACAAGGA
516 AAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
19534344 TCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCAGAAAAAATTTTAAAAAATCCCGAACCGTAA
580 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCCCAAACCGTAA
* * *
19534409 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
645 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
19534474 TAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATG
710 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
** *
19534539 TGCCTAAACCCACCTACCACCCTATCATCCATAGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAG
775 TGCCTAAACCCACCTACCACCCTATCATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAG
19534604 TGCTCGCCTGCCCGCCCACCCGCTCATTTCGTTA
840 TG--C-CC-GCCCGCCCACCCGCTCATTTCGTTA
* ** * *
19534638 GTTGGCTTAGGCATACGAAGTTCATTCGCAGTCTAAGATTGGATCAGACTGAGGGTTGCGGCAGC
1 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* *** * **
19534703 AGGATTGGCAGCACGCAGAAAAGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTACCC
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
19534768 GGCTGAGCGCTCGCACACTTGTTTCGTGGGTTGACTTAGTCATACGAAGTTCATTCCCAGTCAAA
131 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
19534833 GATCGGTCAAGACGGAAGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTT
196 GATCGGTCAAGACGGAAGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTT
* *
19534898 TTCTTTGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACTGGTGGTATTGGGGTTCCG
261 TTCTTTGTCGGGGCACCATCGCC-GAGCATCA-CGGAGAACCTGACCGGCGGTATTGGGGTTCCG
19534963 ACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCAAC-TAT
324 ACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC-ACTTAT
** *
19535027 ATTCACCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTT
388 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * ** * * *
19535092 ACAGTTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATTAGAACACTTTTTTCAAATGATCACGA
453 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
19535157 AATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCA
518 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *** * *
19535222 CATCTACCAAGTTTGACTCCAAAACTCCTTCCA-AAAAAATTTTAAAAAATCCCAAACTGCAAAA
583 CGTCTACCAAGTTTGGGGCCAAAACTCCTT-CAGAAAAAATTTTAAAAAATCCCAAACCGTAAAA
* * *
19535286 AGTTTCCAAAATCGTGAAAAATAGAAAACAAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTA
647 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
19535351 AGGGACCATTGTATGTATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTG
712 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* * * ** * * *
19535416 CCTAAATCCAACC-ACCACCCTATTGATCCACGGCTTACGCAAGCCATCTCTCTTGCCGGCGTAG
777 CCTAAA-CCCACCTACCACCCTA-TCATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAG
* * **
19535480 TGCCCTCCCGCCCACCCGCCCATTCGTTTCGTCG
840 TGCCCGCCCGCCCACCCG--C--TCATTTCGTTA
* * * * * *
19535514 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCTGGCCAGATCGAGGGTTGTGGCAGC
1 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * * * *
19535579 AAGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGAG-TTGCGCATTCCACCCCTCTGGC
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCG-GCTTGCGCATCCCGCCCCTCTGGC
*
19535643 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
130 CGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * * *
19535708 AGATTGGATC-GGACCGAGGGTTGCAGCAGCACATTCTGGGATCAAGCATGTGCTGGTGCCGTAT
195 AGATCGG-TCAAGACGGAAGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCAT
* *
19535772 TTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACTGGAGAACCTGACCGACGGTATTGGGGTTC
259 TTTTCTTTGTCGGGGCACCATCGCC-GAGCATCAC-GGAGAACCTGACCGGCGGTATTGGGGTTC
* * *
19535837 C-AGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
322 CGA-CGATC-GGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACT
* ** *
19535901 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCGTACCCCCTTAAAGATCATTTGAGAT
385 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
19535966 TTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTCA
450 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* **
19536031 CAAAATCTTGTACACTTCGAGTTTTTAGCTGCATTTTTTTGTTTATGCCAACAAAAATACAAGGA
515 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * * *
19536096 TCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTAAAAAAATTCCGAATCGTAA
580 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCCCAAACCGTAA
* ** * * *
19536161 AAACTTTTGAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAACGCT
645 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
** * * * *
19536226 TAAGGGACCATTGTATGAATTTACAAGAGATAAAAATTGCATTGGCATGTAGAAATATGAAGATT
710 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* * *
19536291 TTCCTGAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
775 TGCCTAAACCCACCTACCACCCTATC-ATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTA
*
19536356 GTGCCCGCCCG----CCCGCTCATTTCG-TC
839 GTGCCCGCCCGCCCACCCGCTCATTTCGTTA
* * * * *
19536382 GATTGG-TTAGGCATACGGATTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAG
1 G-TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* *
19536446 CAGGATCGACAGCACGCAGAGGGGGACCCAGGT-GATCCCCGGCTTGTGCATCCCGCCCCTCTGG
65 CAGGATCGGCAGCACGCAGAGGGGGACCC-GGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
19536510 CCGGCTGAGTGCCCGCACGCTTGTTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCT
129 CCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
19536575 AAGCATACGGAGTTCATTCCCAGTCTAGGATCAGATCGGACTGATAGTTTCGGCAACAAATGCTG
194 AAG-AT-C-G-G-TCA-----AGAC--GG---A-A--GG--T--T-G---CGGCAGCACATGCTG
* * * * *
19536640 GGCTC-GAGCATGTGGCTGGTGCC-CAATTTTTCATTGTC-GAG-AGCGTCACC--G----A-GG
233 GGCTCAG-GCATGT-GCTGGTGCCGC-ATTTTTCTTTGTCGGGGCACCATCGCCGAGCATCACGG
* * * *
19536694 AGAACCTGACCGACCGGCATTAGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGCACTATGA
295 AGAACCTGACCG-GCGGTATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGTGTGCGCAC-ATGA
*
19536759 TTGTGGCGATGGGTTGCTGGTACTTGGCGCTTATATTGGCCCCCTATTCCCTCATCAAACCTCGA
357 -TGT-GCGATGGG-TGCTGGTACTTGGCACTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGA
* *
19536824 GAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTATAGTG
418 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
19536889 TCTAAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAC
483 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
19536954 TTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAACGCTTT
548 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
19537019 CAGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGG
613 CAGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
19537084 GTCATCTTGCCAT-AGCACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
678 GTCGTCTTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
19537148 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCATCCAC
742 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCATCCAC
* * * * * * *
19537213 GGCTTACGTATCCCGTCTCTCTAGCCGACGTAGTGGCCGCCCACCCGCCCGCTCGTTTCGTTG
807 GGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTTA
* * * *
19537276 GTTGGCTTAGGCATACAAAGTTCATTCCCAATCTAAGATCAGACTAGACCGAGGGTTGTGGCAGC
1 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * * * * * *
19537341 AAGATCAGCAGCACGCAGAGGTGGACCCGGTCGATCCCCGACTTGCACATCTCGCCCGTCGTAGT
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC-T-G-
* * ** ** * * * *
19537406 GCCTGCCCGCTCGCCCGTC-CGCTCATTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAG
128 GCC-GGCTGAGCGCCCG-CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
19537470 TCTAAGATC
191 TCTAAGATC
19537479 AGATCAGATT
Statistics
Matches: 3155, Mismatches: 455, Indels: 167
0.84 0.12 0.04
Matches are distributed among these distances:
860 41 0.01
861 299 0.09
862 153 0.05
863 4 0.00
864 5 0.00
865 240 0.08
866 3 0.00
867 1 0.00
868 169 0.05
869 15 0.00
870 2 0.00
871 221 0.07
872 18 0.01
873 8 0.00
874 3 0.00
875 401 0.13
876 380 0.12
877 452 0.14
878 2 0.00
880 1 0.00
883 1 0.00
884 14 0.00
885 39 0.01
886 8 0.00
887 3 0.00
888 9 0.00
889 76 0.02
890 357 0.11
891 1 0.00
893 25 0.01
894 124 0.04
895 21 0.01
896 2 0.00
897 5 0.00
898 51 0.02
899 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCGGTCAAGACGGAAGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTT
TTCTTTGTCGGGGCACCATCGCCGAGCATCACGGAGAACCTGACCGGCGGTATTGGGGTTCCGAC
GATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCG
CCCGCCCACCCGCTCATTTCGTTA
Found at i:19536581 original size:26 final size:26
Alignment explanation
Indices: 19536551--19536601 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19536541 GCTGACTTAG
19536551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19536577 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
19536602 GGATCAGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19537545 original size:163 final size:163
Alignment explanation
Indices: 19537256--19537559 Score: 423
Period size: 163 Copynumber: 1.9 Consensus size: 163
19537246 TGGCCGCCCA
* *
19537256 CCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACAAAGTTCATTCCCAATCTAAGATCAGACT
1 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAATCTAAGATCAGACT
* *
19537321 AGACCGAGGGTTGTGGCAGCAAGATCAGCAGCACGCAGAGGTGGACCCGGTCGATCCCCGACTTG
66 AGACCGAGGGTTGCGGCAGCAAGATCAGCAGCACGCAGAGGAGGACCCGGTCGATCCCCGACTTG
*
19537386 CACATCTCGCCCGTCGTAGTGCCTGCCCGCTCG
131 CACATCCCGCCCGTCGTAGTGCCTGCCCGCTCG
* * *** *
19537419 CCCGTCCGCTCATTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-T
1 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAATCTAAGATCAGACT
** * * *
19537483 CAGATTGAGGGTTGCGGCAGTAGGATC-GACAGCACGCAGAGGAGGACTCGGTCGATCCCCGACT
66 -AGACCGAGGGTTGCGGCAGCAAGATCAG-CAGCACGCAGAGGAGGACCCGGTCGATCCCCGACT
*
19537547 TGCGCATCCCGCC
129 TGCACATCCCGCC
19537560 TCTCTGGCCA
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
162 2 0.02
163 120 0.98
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (163 bp):
CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAATCTAAGATCAGACT
AGACCGAGGGTTGCGGCAGCAAGATCAGCAGCACGCAGAGGAGGACCCGGTCGATCCCCGACTTG
CACATCCCGCCCGTCGTAGTGCCTGCCCGCTCG
Found at i:19537652 original size:159 final size:162
Alignment explanation
Indices: 19537256--19537663 Score: 416
Period size: 163 Copynumber: 2.5 Consensus size: 162
19537246 TGGCCGCCCA
* ** * * * *
19537256 CCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACAAAGTTCATTCCCAATCTAAGATCAGACT
1 CCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCGGTCC
* * *
19537321 AGACCGAGGGTTGTGGCAGCAAGATCAGCAGCACGCAGAGGTGGACCCGGTCGATCCCCGACTTG
65 AGACAGAGGGTTGCGGCAGCAAGATCAGCAGCACGCAGAGGAGGACCCGGTCGATCCCCGACTTG
* * **
19537386 CACATCTCGCCCGTCGTAGTGCCTGCCCGCTCG
130 CACATCCCGCCCGTCGTAGTGCCAGCCCGAGCG
* * * *
19537419 CCCGTCCGCTCATTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGAT-
1 CCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATC-GGTC
** * * *
19537483 CAGATTGAGGGTTGCGGCAGTAGGATC-GACAGCACGCAGAGGAGGACTCGGTCGATCCCCGACT
64 CAGACAGAGGGTTGCGGCAGCAAGATCAG-CAGCACGCAGAGGAGGACCCGGTCGATCCCCGACT
* **
19537547 TGCGCATCCCGCCTC-TC-T-G-GCCAG-TTGAGCG
128 TGCACATCCCGCC-CGTCGTAGTGCCAGCCCGAGCG
* * * * *
19537578 CCCGCACGCTTGTTTCGTGGGTTGACTTAGTCATATGAAGTTTATTCCCAGTCTAAGATCGGTCC
1 CCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCGGTCC
* *
19537643 GGACAGAGGGTTACGGCAGCA
65 AGACAGAGGGTTGCGGCAGCA
19537664 CATGCTGGGC
Statistics
Matches: 200, Mismatches: 40, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
158 3 0.01
159 70 0.35
160 4 0.02
161 1 0.00
162 2 0.01
163 119 0.60
164 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (162 bp):
CCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCGGTCCA
GACAGAGGGTTGCGGCAGCAAGATCAGCAGCACGCAGAGGAGGACCCGGTCGATCCCCGACTTGC
ACATCCCGCCCGTCGTAGTGCCAGCCCGAGCG
Found at i:19539366 original size:26 final size:26
Alignment explanation
Indices: 19539330--19539382 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19539320 GTTGACTTAG
19539330 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19539356 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19539382 G
1 G
19539383 ATTAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19539652 original size:75 final size:75
Alignment explanation
Indices: 19539525--19539677 Score: 261
Period size: 75 Copynumber: 2.0 Consensus size: 75
19539515 GGGGTGTGCG
* *
19539525 CACATGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
1 CACATGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCT
*
19539590 CGAGAACTCA
66 CAAGAACTCA
*
19539600 CACATGATGTGAGATGGGTACTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCACCAAACCT
1 CACATGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCT
*
19539665 CAAGAACTGA
66 CAAGAACTCA
19539675 CAC
1 CAC
19539678 CCCCTTAAAG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (75 bp):
CACATGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCT
CAAGAACTCA
Found at i:19539803 original size:107 final size:107
Alignment explanation
Indices: 19539617--19539830 Score: 374
Period size: 107 Copynumber: 2.0 Consensus size: 107
19539607 TGTGAGATGG
* *
19539617 GTACTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCACCAAACCTCAAGAACTGACACCCCC
1 GTACTGGTACTTGGCTCTTATATTGGCACCCTATCCCTCACCAAACCTCAAGAACTCACACCCCC
*
19539682 TTAAAGAGCGTTTGAGATTTTACAGGTTTGCTTCCAGTAGCC
66 TTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19539724 GTACTGGTACTTGGCTCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
1 GTACTGGTACTTGGCTCTTATATTGGCACCCTATCCCTCACCAAACCTCAAGAACTCACACCCCC
*
19539789 TTAAAGAGTGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
66 TTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
19539831 ATTAAAGTGT
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
107 101 1.00
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (107 bp):
GTACTGGTACTTGGCTCTTATATTGGCACCCTATCCCTCACCAAACCTCAAGAACTCACACCCCC
TTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
Found at i:19540433 original size:26 final size:26
Alignment explanation
Indices: 19540397--19540449 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19540387 GTTGACTTAG
*
19540397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19540423 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19540449 G
1 G
19540450 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19541323 original size:26 final size:26
Alignment explanation
Indices: 19541293--19541374 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
19541283 TGGATTGACA
*
19541293 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
19541319 TAAGCACACCGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19541345 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19541371 TAAG
1 TAAG
19541375 ATCAGACCGA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19541562 original size:899 final size:896
Alignment explanation
Indices: 19539727--19542056 Score: 3010
Period size: 899 Copynumber: 2.6 Consensus size: 896
19539717 AGTAGCCGTA
19539727 CTGGTACTT-GGCTCTTATATT-GGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
1 CTGGTACTTGGGC-CTTATATTGGGC-CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
** *
19539790 TAAAGAGTGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
64 TAAAGAGCATTTGAGATTTTACAGGTTTGCT-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
19539855 CTTTTCTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTCGCTGACTTTTTTTGTGCATGC
128 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
19539920 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACTCTCAGAAAAAATTTTAA
193 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCG-AAAAATTTTAA
* **
19539985 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-AGGTCGTCTTGCCATG
257 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGA-GTCGTCTTGCCATG
* *
19540049 ACACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGC
321 AGACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCA-AAGCCATAAAAATGGCATTGGC
* * * *
19540113 ACGTAGAAATATGAAGATGTGCCTAAACCCACCCACCACACTATCGATACACGGCTTGCGCATCC
385 ATGTAGACATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
19540178 CGTCTCTCTGGCCAGCGTAGCGCCCGCCCGCCCGCCCGCTTGTTTCATT-GGTTGGCTAAGGCAT
450 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTTGTTTC-TTCGGTTGGCTTAGGCAT
* * * * * *
19540242 ACGGAGTTCATTCCAAGTCTAACATTAGACCGAACAGAGGGTTGAGGTAGTAGTATCGGCAGCAT
514 ACGGAGTTCATTCCAAGTCTAACATCAGACCAAACAGAGGGTTGAGGCAGCAGGATCGGCAGCAC
* * ** * * *
19540307 GCAGAGGGCATCTCGGTCGATCCTCAGCTTGCGCATCCCTCCCTTCTGACCGGCTGAGCGCCCGC
579 ACAGAGGGCATCCCGACCGATCCTCAGCTTGCCCATCCCGCCCCTCTGACCGGCTGAGCGCCCGC
* * * * *
19540372 ACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
644 ACGCTCGTTTCATGAGTTGACATAAGCATACGGAGTTCATTCCCAATCTAAGCACACAGAGTTCA
* * * * ** *
19540437 TTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGTT
709 TTCCCAGTCTAAGATCGGACCAGACCCA-GGTTGCAACAGCACATGCCGAACTC-GGCACGTGTT
* * * ** * *
19540502 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCCGCGAC
772 CGTACAGCATCATGCTGCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCCGCGAC
*
19540567 ATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTTTGCACACATGATGTGCGATGGGTG
837 ATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGGTG
* *
19540627 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
1 CTGGTACTTGGGCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
19540692 AAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
66 AAGAGCATTTGAGATTTTACAGGTTTGCT-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
19540757 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCA
130 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
19540822 TCAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCTAAAACTCTTTCCGAAAGAATTTT-AAA
195 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA-AATTTTAAAA
* *
19540886 AATCCCGAACCGTAAAAACTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAGA
259 AATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAGA
* * *
19540951 CTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTCAAAGCCATAAAAATGACATTGACATGT
324 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCAAAGCCATAAAAATGGCATTGGCATGT
* * *
19541016 AGACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGTC
389 AGACATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
19541081 TCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCATACGGA
454 TCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTTGTTTCTTCGGTTGGCTTAGGCATACGGA
* *
19541146 GTTCATTCCCAGTCTAAGATCAGACCAAATC-GAGGGTT-ACGGCAGCAGGATCGGCAGCACACA
519 GTTCATTCCAAGTCTAACATCAGACCAAA-CAGAGGGTTGA-GGCAGCAGGATCGGCAGCACACA
* * *
19541209 GAGTGGGA-CCCGACCGAT-CTCCGGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
582 GAG-GGCATCCCGACCGATCCT-CAGCTTGCCCATCCCGCCCCTCTGACCGGCTGAGCGCCCGCA
*
19541272 CGCTCGTTTCATG-GATTGACATAAGCATACGGAGTTCATTCCCAATCTAAGCACACCGAGTTCA
645 CGCTCGTTTCATGAG-TTGACATAAGCATACGGAGTTCATTCCCAATCTAAGCACACAGAGTTCA
* ** *
19541336 TTCCCAGTCTAAGCATACGGAGTTCATTCCCA-G-T-CTA-AG-ATCA-GACCGAAC-C-G-ACG
709 TTCCCAGTCTAAG-AT-CGGA--CCAGACCCAGGTTGCAACAGCA-CATG-CCGAACTCGGCACG
* * * **
19541392 -GTTACG-ACAGCA-CATGCTGGGCTC-GGGCATGTGC-TGGTGCCGGAGCATCGTCGGAGAACC
768 TGTT-CGTACAGCATCATGCTGCG-TCGGGGCA---CCATCGT--CGGAGCATCACCGGAGAACC
* *
19541452 TGATCGGCCG-CATTGGGGTTCCGACGATC-GGGGGGTCCGGGGGGGTGTGCACACATGATGTGC
826 TGACCCG-CGACATTGGGGTTCCGACGATCGGGGGGGT-CGGGGGGGTGTGCACACATGATGTGC
19541515 GATGGGTGG
889 GATGGGT-G
* **
19541524 CTGGTACTTGGGCCTTATAATTGGGCCCCTATTCCCTCAATCAAACCTCAAGAACTCACACCCGA
1 CTGGTACTTGGGCCTTAT-ATTGGGCCCCTA-TCCCTC-ATCAAACCTCGAGAACTCACACCCCC
*
19541589 TTAAAGAGCATTTGAGATTGTTACAGGTTGTTGC-CCAGTAGCCGTTAAAGTGGTCTGAAATGGG
63 TTAAAGAGCATTTGAGATT-TTACAGG-T-TTGCTCCAGTAGCCATTAAAGT-GTCTGAAATGGG
19541653 GACAACTTTTTTCAAATGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
124 GAC-ACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19541718 GCATGCCAACAAAAGTGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTT-CGCAAAA
187 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCG-AAAA
* * *
19541782 GTTTTAAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
250 ATTTT-AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19541847 TGCCATGAGACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTCAAAGCCATAAAAATGGC
314 TGCCATGAGACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCAAAGCCATAAAAATGGC
* * * * *
19541912 ATTGGCATGCAGACATATGAATATGTGCCTAAGCCCACCGACCACCCTATTGATCCACGGCTTGC
379 ATTGGCATGTAGACATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGC
* * *
19541977 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCACCCACCCG-TTGATTTCATCGGTTG
444 GCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCACCCGCCCGCTTG-TTTCTTCGGTTG
*
19542041 GCTTAGGCATATGGAG
504 GCTTAGGCATACGGAG
19542057 GGGGACCCGA
Statistics
Matches: 1257, Mismatches: 128, Indels: 80
0.86 0.09 0.05
Matches are distributed among these distances:
892 9 0.01
893 9 0.01
894 6 0.00
895 9 0.01
896 74 0.06
897 23 0.02
898 24 0.02
899 411 0.33
900 277 0.22
901 30 0.02
902 16 0.01
903 21 0.02
904 98 0.08
905 7 0.01
906 199 0.16
909 2 0.00
910 42 0.03
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (896 bp):
CTGGTACTTGGGCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAATTTTAAAAAA
TCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAGACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCAAAGCCATAAAAATGGCATTGGCATGTAG
ACATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTTGTTTCTTCGGTTGGCTTAGGCATACGGAGT
TCATTCCAAGTCTAACATCAGACCAAACAGAGGGTTGAGGCAGCAGGATCGGCAGCACACAGAGG
GCATCCCGACCGATCCTCAGCTTGCCCATCCCGCCCCTCTGACCGGCTGAGCGCCCGCACGCTCG
TTTCATGAGTTGACATAAGCATACGGAGTTCATTCCCAATCTAAGCACACAGAGTTCATTCCCAG
TCTAAGATCGGACCAGACCCAGGTTGCAACAGCACATGCCGAACTCGGCACGTGTTCGTACAGCA
TCATGCTGCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCCGCGACATTGGGGTT
CCGACGATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGGTG
Found at i:19543450 original size:26 final size:26
Alignment explanation
Indices: 19543416--19543466 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19543406 TGACTTAGTT
*
19543416 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
19543442 ATACAGAGTTCATTCTCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19543467 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:19545041 original size:26 final size:26
Alignment explanation
Indices: 19545007--19545056 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19544997 GTCTTAGGCG
*
19545007 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
19545033 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
19545057 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:19545945 original size:26 final size:26
Alignment explanation
Indices: 19545911--19545961 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19545901 TGACTTAGTT
*
19545911 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
19545937 ATACAGAGTTCATTCTCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19545962 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:19547693 original size:26 final size:26
Alignment explanation
Indices: 19547657--19547709 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19547647 CTTCATTTAG
19547657 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19547683 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19547709 G
1 G
19547710 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19549530 original size:544 final size:546
Alignment explanation
Indices: 19548493--19549558 Score: 1588
Period size: 544 Copynumber: 1.9 Consensus size: 546
19548483 ATGCCGCCCC
* *
19548493 TCTGGCCGGCTGACCGCCCACACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCTC
1 TCTGGCCGGCTGACCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
19548558 AGTCTAAGATTGGACCGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
66 AGTCTAAGATCGGACCGGACTGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTAC
* * *
19548623 CGTATTTTTCTTCGTCGGGGCACTATCACCTGAGCATCGTCGAAGAACCTGACCGACGGCATTAG
131 CGCATTTTTCTTCGTCAGAGCAC--TCA-CT--GCATCG-CGAAGAACCTGACCGACGGCATTAG
* *
19548688 GGTTCTGATGATCGGGGGGGCCGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
190 GGTTCTGACGATCGAGGGGGCCGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
19548753 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
255 CCCTAAAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
19548818 AGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTTCAAATG
320 AAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAACGGGGACACTTTTTTCAAATG
**
19548883 GTCACAAAATCTTGTACACTTCGAGTTTTTATTTGATTTTTTTATGCATGCCAAAAAAAAATACA
385 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTATGCATGCCAAAAAAAAATACA
* *
19548948 AGGATCACGTCTTCCAAGTTTGGGGCCAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCCAAACC
450 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACC
19549013 GCCTACCACCCTATCAATCCACCTACCACCCT
515 GCCTACCACCCTATCAATCCACCTACCACCCT
* * * * *
19549045 TCTGGCCGGCTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCC
1 TCTGGCCGGCTGACCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* *
19549110 AGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTAC
66 AGTCTAAGATCGGACCGGACTGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTAC
* * * *
19549175 CGCATTTTTCTTTGTCAGAGCAC-CA-T-CA-C-CGGAGAACCTGACCGGCGGCATTGGGGTT-T
131 CGCATTTTTCTTCGTCAGAGCACTCACTGCATCGCGAAGAACCTGACCGACGGCATTAGGGTTCT
* **
19549234 CGACGATCGAGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGGTC
196 -GACGATCGAGGGGGCC--GGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
** *
19549299 TAAAAATTGTTCCCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCCTTAAAGAGCATTTGAA
258 T-AAAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAA
* *
19549364 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAATTGGT
322 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAACGGGGACACTTTTTTCAAATGGT
* *
19549429 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAACAAATACAA
387 CACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTATGCATGCCAAAAAAAAATACAA
* * *
19549493 GGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
451 GGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCG
19549558 C
516 C
19549559 AAAAAGTTTG
Statistics
Matches: 465, Mismatches: 44, Indels: 18
0.88 0.08 0.03
Matches are distributed among these distances:
540 1 0.00
541 40 0.09
543 45 0.10
544 223 0.48
545 16 0.03
547 1 0.00
549 2 0.00
552 137 0.29
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (546 bp):
TCTGGCCGGCTGACCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACCGGACTGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTAC
CGCATTTTTCTTCGTCAGAGCACTCACTGCATCGCGAAGAACCTGACCGACGGCATTAGGGTTCT
GACGATCGAGGGGGCCGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTAA
AATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAACGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTATGCATGCCAAAAAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCCTAC
CACCCTATCAATCCACCTACCACCCT
Found at i:19549948 original size:26 final size:26
Alignment explanation
Indices: 19549910--19549962 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19549900 GTTGAATTAG
19549910 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19549936 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19549962 G
1 G
19549963 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19551147 original size:92 final size:92
Alignment explanation
Indices: 19550990--19551184 Score: 381
Period size: 92 Copynumber: 2.1 Consensus size: 92
19550980 GATCGGACTG
19550990 AGGGTTCCGACAGCAATTGCTGGGCTCGAGAATGTGCTGGTGGCACATTTTTCTTCGTCGGAGCA
1 AGGGTTCCGACAGCAATTGCTGGGCTCGAGAATGTGCTGGTGGCACATTTTTCTTCGTCGGAGCA
19551055 TCATCGGAGAACCTGACCGGTGGCATT
66 TCATCGGAGAACCTGACCGGTGGCATT
19551082 AGGGTTCCGACAGCAATTGCTGGGCTCGAGAATGTGCTGGTGGCACATTTTTCTTCGTCGGAGCA
1 AGGGTTCCGACAGCAATTGCTGGGCTCGAGAATGTGCTGGTGGCACATTTTTCTTCGTCGGAGCA
*
19551147 TCATCGGAGAACCTGACCTGTGGCATT
66 TCATCGGAGAACCTGACCGGTGGCATT
19551174 AGGGTTCCGAC
1 AGGGTTCCGAC
19551185 GATCGGGGGG
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 102 1.00
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.26
Consensus pattern (92 bp):
AGGGTTCCGACAGCAATTGCTGGGCTCGAGAATGTGCTGGTGGCACATTTTTCTTCGTCGGAGCA
TCATCGGAGAACCTGACCGGTGGCATT
Found at i:19552501 original size:904 final size:898
Alignment explanation
Indices: 19551140--19553598 Score: 3567
Period size: 896 Copynumber: 2.7 Consensus size: 898
19551130 TTTTCTTCGT
** * * *
19551140 CGGAGCATCATCGGAGAACCTGACCTG-TGGCATTAGGGTTCCGACGA-TCGGGGGGCCGGG-GG
1 CGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGTGG
* * *
19551202 GTGTGCGCTCATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCTCTATCCCTCAT
65 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
19551267 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
130 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
19551332 CATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTT
195 CATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
19551397 TTTAGCTGAATTGTTTTGTGCATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
260 TTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
19551462 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCTTGAAAAA
324 AAAACTCCTT-CGAAAAAATTTT-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAA
* * *
19551527 TAGAGAACGAGTTGTCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTA
387 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
19551592 CAAGCCATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
452 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
19551657 ATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCGGTCCGCCCGCCCGCCCG
517 ATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCC-G-CCGCCCGCCCGCACG
* * *
19551722 TTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAG
580 -TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAG
* * * * *
19551787 GGTTGTGGTAGTAGGATCGGCAGCACACAGAGGGGGACCCTG-TCGATCCCCAGCTTGCGCATCC
644 GGTTGTGGCAGCAAGATCGGCAGCACACAGAGGGGGACCC-GACCGATCCCCAGCTTACGCATCC
* * * *
19551851 CGCCCCTCTGGCCAGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTC
708 CGCCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTC
* *** * * *
19551916 ATT-CTCAGTCTAAGCATATGGAGTTCATTCGTGGTCTAAGATCATACCGGACCGAGGGTTGCGG
773 ATTCCT-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG
* * **
19551980 CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
837 CAGCACATACTGGGCTCGGACATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGC
* *
19552042 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCAATTGGGGGGGCCGGGTCGG
1 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGT-GG
* *
19552107 GTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCAT
65 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
19552172 -GAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGC
130 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
19552236 CATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTT
195 CATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
19552301 TTTAGCTGCAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
260 TTTAGCTG-AATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* ** *
19552366 AAAACTCCTTCTGAAAAAATTTTGAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAA
324 AAAACTCCTTC-GAAAAAATTTT-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAA
*
19552431 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTA
387 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * * *
19552496 CAAGCCATTAAAATGGCATCGGCACGTAGAAATATTAAAATGTGCCTAAACCCAACTACCACCCT
452 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
19552561 ATCGATCCACAGTTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C-CCACCCG-CC-CAC-TC
517 ATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCGCCCGCCCGCACGTC
* * * * *
19552621 ATTTCGTCGGTTGGCTTAGGCATACGGAGTCCATTTCCAGTCTAAGAATGGATCGGACTGAGGGT
582 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGT
* * ** **
19552686 TTTGGCAGCAAGATCGGCAGCACCCAGAGGGGGATGCGACCGATCCCCAGCTTACGCATCTTGCC
647 TGTGGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCC
*
19552751 CCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTC
712 CCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTC
*
19552816 CTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCA
777 CTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* * *
19552881 CATACTGGGCTCGGACATGTGTTGGTGTCGTATTTTTTTTCACCGGGGCACCATCGC
842 CATACTGGGCTCGGACATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGC
* *
19552938 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGCGGGCCGGGGTGG
1 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCC-GGGTGG
* *
19553003 GTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCAT
65 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * * *
19553068 CAAACCTTGAGAACTCATACCCCCTTAAAAAGCATTTGAGATTTTATAAGTTTGCTGCCAGTAGC
130 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
19553133 AATTAAAGTGTTTGAAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
195 CATTAAAGTGTTTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
19553198 TTTTAGCTGATTTTTTTGTGCATACCAACAAAAATACAACGATCACATCTACCAAGTTTGGGGCC
259 TTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
19553263 AAAAATTCTTACGAAAAAATTTTAAAAATATCGAACCATAAAAAGTTTCAAAAATCTTGAAAAAT
324 AAAACTCCTT-CGAAAAAATTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAAT
* * * *
19553328 AGAAATCGAGTCGTCTCGGCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
388 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** * * * *
19553393 AAGCCATAAAAATGGCATTGGCTTGCAAAAATATGAAGATGTGCCTAAACTCACCTACCAGCTTA
453 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
19553458 TCGATCCACGGCTTGTGCATCCCGTCTCCCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCACGC
518 TCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCC-GCCCGCCCGCACG-
* * ** *
19553523 TCGTTTCGTCAGTTGGCTTCGGCATA-TTAGGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
580 TCGTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATTGGATCGGACCGAG
*
19553587 TGTTGT-GCAGCA
644 GGTTGTGGCAGCA
19553599 CATGCTGGGC
Statistics
Matches: 1386, Mismatches: 150, Indels: 41
0.88 0.10 0.03
Matches are distributed among these distances:
895 1 0.00
896 580 0.42
897 146 0.11
898 60 0.04
899 4 0.00
900 10 0.01
901 3 0.00
902 42 0.03
903 21 0.02
904 453 0.33
905 66 0.05
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGTGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCGAAAAAATTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCGCCCGCCCGCACGTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTG
GCAGCAAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTC
TAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATA
CTGGGCTCGGACATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGC
Found at i:19552829 original size:26 final size:26
Alignment explanation
Indices: 19552799--19552851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19552789 GTTGACTTAG
* *
19552799 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19552825 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19552851 G
1 G
19552852 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19554275 original size:716 final size:718
Alignment explanation
Indices: 19552825--19554361 Score: 2136
Period size: 716 Copynumber: 2.1 Consensus size: 718
19552815 CCTAGTCTAA
* * * *
19552825 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG-AGCAGCACATGCTGGG
* * * ** * ** * *
19552890 CTCGGACATGTGTTGGTGTCGTATTTTTTTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGATGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGCAGA
* *
19552955 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGCGGGCCGGGGTGGGTGTGCGCACATGATGT
130 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGCGGGCCGGGGTGGGTGTGCGCACATGATAT
* * *
19553020 GCGGTGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
19553085 TACCCCCTTAAAAAGCATTTGAGATTTTATAAGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAA
260 CACCACCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAA
* * *
19553150 ATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTT
325 ATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTGTTT
* *
19553215 GTGCATACCAACAAAAATACAACGATCACATCTACCAAGTTTGGGGCCAAAAATTCTTACGAAAA
390 GTGCATACCAACAAAAATACAACGATCACATCTACCAAGTTTGGGACCAAAAATCCTTACGAAAA
* * *
19553280 AATTTTAAAAATATCGAACCATAAAAAGTTTCAAAAATCTTGAAAAATAGAAATCGAGTCGTCTC
455 AATTTTAAAAAAATCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTC
* *
19553345 GGCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * * * *
19553410 TTGGCTTGCAAAAATATGAAGATGTGCCTAAACTCACCTACCAGCTTATCGATCCACGGCTTGTG
585 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACAACCTTATCGATCCACGGCTTGCG
* * * *
19553475 CATCCCGTCTCCCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCACGCTCGTTTCGTCAGTTGGC
650 CATCCCGTCTCCCTGGACGACGTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCAGTTAGC
*
19553540 TTCG
715 TTAG
** * * *
19553544 GCATA-TTAGGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGTGTTGTGCAGCACATGCTGGG
1 GCATACGGA-GTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGAGCAGCACATGCTGGG
* **
19553608 CTCGGGCATGTGATGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTTGCAGA
65 CTCGGGCATGTGATGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGCAGA
** * * *
19553673 ACCTGACCGACGACATTGGGGTTCCGGTGATTGGG-GTTGCCGGGG-GGGT-T-TGCACATGATA
130 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGCG-GGCCGGGGTGGGTGTGCGCACATGATA
19553734 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
19553799 ACACCACCTTAAAATGCATTTGGGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG-A
259 ACACCACCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCAATTAAAGTGTCTGAA
**
19553863 AATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTGT
324 AATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTGT
* * * * * *
19553928 TTGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAA
388 TTGTGCATACCAACAAAAATACAACGATCACATCTACCAAGTTTGGGACCAAAAATCCTTACGAA
19553993 AAAA-TTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
453 AAAATTTTAAAAAAAT--CGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
19554057 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAAT
516 TCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
19554122 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACAACCTTATCGATCCACGGCT
581 GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACAACCTTATCGATCCACGGCT
** ** * * *
19554187 TGCGCATCCCGTCTTTCTGGACGACGTAGTGCCCGCCCGCCCTTCCGCCCGCTTGTTTCGT-TGA
646 TGCGCATCCCGTCTCCCTGGACGACGTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCAG-
19554251 TTAGCTTAG
710 TTAGCTTAG
* ** * *
19554260 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACAATAGCACATGTTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT-GAGCAGCACATGCTGGG
* * * *
19554325 CTCGGGCATGTGCTGGTTCCACAATTTTCTTTGTCGG
65 CTCGGGCATGTGATGGTGCCACATTTTTCTTCGTCGG
19554362 CTGAGCGTCC
Statistics
Matches: 715, Mismatches: 95, Indels: 18
0.86 0.11 0.02
Matches are distributed among these distances:
714 65 0.09
715 192 0.27
716 264 0.37
717 50 0.07
718 105 0.15
719 39 0.05
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGAGCAGCACATGCTGGGC
TCGGGCATGTGATGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGCAGAA
CCTGACCGACGACATTGGGGTTCCGACGATCGGGCGGGCCGGGGTGGGTGTGCGCACATGATATG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCACCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAAA
TGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTGTTTG
TGCATACCAACAAAAATACAACGATCACATCTACCAAGTTTGGGACCAAAAATCCTTACGAAAAA
ATTTTAAAAAAATCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACAACCTTATCGATCCACGGCTTGCGC
ATCCCGTCTCCCTGGACGACGTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCAGTTAGCT
TAG
Found at i:19554426 original size:26 final size:26
Alignment explanation
Indices: 19554396--19554449 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
19554386 TGGGTTGACT
*
19554396 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
19554422 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
19554448 TA
1 TA
19554450 AGATCAGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:19555341 original size:26 final size:26
Alignment explanation
Indices: 19555305--19555357 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19555295 GTTGACTTAG
*
19555305 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19555331 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19555357 G
1 G
19555358 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19555828 original size:889 final size:867
Alignment explanation
Indices: 19553553--19556902 Score: 3316
Period size: 882 Copynumber: 3.9 Consensus size: 867
19553543 GGCATATTAG
* *
19553553 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGTGTTGTGCAGCACATGCTGGGCTCGGGCATG
1 GTTCATTCCCAGTCTAAGATCGGATCGGA-CTAG-GTTGGGCAGCACATGCTGGGCTCGGGCATG
* ** * *
19553618 TGATGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTTGCAGAACCTGACCG
64 TGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * ** * *
19553682 ACGACATTGGGGTTCCGGTGATTGGGGTTGCCGGGGGGGT-T-TGCACATGATATGCGATGGGTG
128 ACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTG
*
19553745 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTA
192 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
19553810 AA-ATGCATTTGGGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAA
257 AAGA-GCATTTGAGATTTTACAGGTTTG---CCA-TAGCC-----A----CTGAAATGGGGACAC
** *
19553874 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTGTTTGTGCATGCC
308 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
19553939 AACAAAAATT-CAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTAAA
373 AAC-AAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* **
19554003 AAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
437 AAAAT-CCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
19554068 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCAC
501 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
19554133 ACAGAAATATGAAGATGTGCCTAAACCCACCTACAACCTTATCGATCCACGGCTTGCGCATCCCG
566 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * ** * * * *
19554198 TCTTTCTGGACGACGTAGTGCCCGCCCGCC-CTTCCGCCCGCTTGTTTCGTTGATTAGCTTAGGC
631 TCTCTCTGGACGGCGTAGTGCCCGCCCGCCTCCGCCCCCCGCTCGTTTCGTCGATTGGCTTAGGC
* * * * ** *
19554262 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACAATAGCACATGTTAGGCT
696 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAATAGCACAAGAGAGGCC
** * ** * ** *
19554327 CGGGCATGTGCTGGTTCCACAATTTTCTTTGTCGGCTGAGCGTCCGCACGCTTGTTTCATGGGTT
761 CGACCATGTGCTGGATCCACAACCTTCTTGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT
* * *
19554392 GACTTAGGCATATGGAGTTCATTCCCAGTCTAGGCATACGGA
826 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
* * * * *
19554434 GTTCATTCCCAGTCTAAGATCAGATCGGACTGATGGTTGTGGTAGGACATGCTGGGCTTGGACAT
1 GTTCATTCCCAGTCTAAGATCGGATCGGACT-A-GGTTG-GGCAGCACATGCTGGGCTCGGGCAT
*
19554499 GTGCTGGTGC-GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACTTGACCG
63 GTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * *
19554563 ACGGCATTGGGGTTCCGACGATCGGGCGGGTC-GGGGGGTGTGCGCCCATGATGTGCGATGGTTG
128 ACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG-TG
* * *
19554627 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCCAGAACTCATACCCCCTTA
192 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
19554692 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
257 AAGAGCATTTGAGATTTTACAGG-TT--TGCCA-TAGCC-----A----CTGAAATGGGGACACT
*
19554757 TTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
309 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* **
19554822 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAAAAAACTCCTTCCGAAAAAATTTTAAAC
374 ACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA-
* *
19554887 AATTCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAA
438 AAATCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * *
19554952 CTTCATGTGAAGCCGTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
503 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * *
19555017 AAAAATATGAAGCTGTGTCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
568 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
19555082 TCTCTAGTCGGCGTAGTGCCCGCCCGCCTGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGG
633 TCTCTGGACGGCGTAGTGCCCGCCCGCCT--CCGCCC-CCCGCTCGTTTCGTCGATTGGCTTAGG
* * * **
19555147 CATACAGAGTTCATTCTCAGTCTAAGATTGGACCAGATTGAGGGTTGCGGTAGCAGGATCAGCAG
695 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG-T----TA-CA--AT-AGCA-
** *
19555212 CAAGAAGAAGAGGACCCGACCGATCCCCG-GCTTGCGCATCC-CGCCCTT-TTGGTCGGTTGAGC
750 C---AAG-AGAGG-CCCGACC-AT----GTGC-TG-G-ATCCACAACCTTCTTGGTCGGCTGAGC
* *
19555274 ACCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
802 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
19555339 A
867 A
* *
19555340 GTTCATTCCTAGTCTAAGATCGGATCGGACATAGCGTTGCGGCAGCAAATGCTGGGCTCGGGCAT
1 GTTCATTCCCAGTCTAAGATCGGATCGGAC-TAG-GTTG-GGCAGCACATGCTGGGCTCGGGCAT
* ** *
19555405 GTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCACCGGAGAACCTAACC-
63 GTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
19555469 AGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGCGT
128 A-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG-GT
* *
19555534 GCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAGCCTCGAGAACTCACACCCCCTT
191 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
19555599 AAAGAGCATTCGAGATTTTACAGGTTTG-C-T-G-C-C-GAAATGGGGATACTTTTTTCAAATGG
256 AAAGAGCATTTGAGATTTTACAGGTTTGCCATAGCCACTGAAATGGGGACACTTTTTTCAAATGG
19555658 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAA
321 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAA
* * *
19555723 GGATCACGTCTACCAAGTTTGGGGCCAAAATTCTTTTCGAAAAAATTTTAAAAAATCCTGAACCG
386 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-GAACCG
* * * *
19555788 TAAAAAGTTTTGTAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTACACGTGAAG
450 TAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
19555853 GTTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
515 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* *
19555918 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGC
580 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGC
* * * * *
19555983 ATAATGCCCTCCCG-CT-CGCCCACCTGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
645 GTAGTGCCCGCCCGCCTCCGCCC-CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
* * * * **
19556046 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTAC----G-GC-AG-TAGGATCGA-CA---GC--
709 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAATAGCACAAGAGAGGCCCGACCATGTGCTG
* * *** * * * * * * * * *
19556098 -ATGCAGAGGGTTACCT--TAGGC--A-TA--TGGA-GTTCATTCCCA---G-T--C-TAAGCAT
774 GATCCACAACCTT-CTTGGTCGGCTGAGCACCCGCACGCTCGTT-TCATGGGTTGACTTAGGCAT
*
19556147 ACGGAGTTCATTCCCAGTCTAAG-ATA-GGA
837 ACGGAGTTCATTCCCAGTCTAAGCATACAGA
**** **** *** * ** *
19556176 CCGGATTGAGGGTGGCAGCAGCACAT--G-CTGGGCTTGGGCATG----TGCTGGTGC-C--GCA
1 GTTCATTCCCAGTCTAAG-ATCGGATCGGACTAGG-TTGGGCA-GCACATGCTGG-GCTCGGGCA
* * * * * ** * ** * * * *
19556231 TTTTTCTTCGT-CGGGGA---ACCATCG-C-CAG-AGCATCGTCGGAGAACCTGATC-G-G----
62 -TGTGC-TGGTGC-AGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-G-TCGGAGAACC
*
19556283 -------CGGCATTGGGGTTCCAGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
122 TGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
*
19556340 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCACACC
187 T-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
19556405 CCCTTAAAGACCATCTGAGATTTTACAGGTTTGCTGTTAGTAGCCCTTAAAGTGTCTGAAATGGG
251 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC---CA-TAG-CC----A----CTGAAATGGG
* * *
19556470 GACGCTTTTTCCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGC
303 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
19556535 ATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGTG-CAACACTCCTTCCGAAAAAAT
368 ATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGG-GCCAAAACTCCTTCCGAAAAAAT
* * *
19556599 GTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTT-C
432 TTTAAAAAATC-CGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
19556663 CATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCAAAAAAATGGCAGT
496 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-T
* * * *
19556728 T-GCATGCAAAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
560 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * * *
19556792 ATCCCGTCTTTCTGGCCAGTGTAGTGCCCGCCC-AC-CCG---TCCGCTCATTTTGTCGGTTGGC
625 ATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCCGCCTCCGCCCCCCGCTCGTTTCGTCGATTGGC
* * *
19556852 TTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTT
690 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
19556903 GCGACCGCAC
Statistics
Matches: 2118, Mismatches: 266, Indels: 226
0.81 0.10 0.09
Matches are distributed among these distances:
811 116 0.05
812 31 0.01
817 1 0.00
818 1 0.00
820 1 0.00
823 13 0.01
824 2 0.00
825 66 0.03
826 4 0.00
827 3 0.00
828 4 0.00
829 159 0.08
830 185 0.09
831 2 0.00
832 5 0.00
833 6 0.00
834 1 0.00
835 1 0.00
836 9 0.00
837 7 0.00
838 29 0.01
839 1 0.00
841 1 0.00
842 1 0.00
844 5 0.00
845 2 0.00
847 1 0.00
848 1 0.00
849 3 0.00
850 5 0.00
852 1 0.00
855 2 0.00
861 1 0.00
862 1 0.00
863 3 0.00
864 3 0.00
866 2 0.00
870 1 0.00
872 1 0.00
879 1 0.00
880 10 0.00
881 114 0.05
882 473 0.22
883 6 0.00
884 1 0.00
885 71 0.03
886 59 0.03
887 1 0.00
888 7 0.00
889 327 0.15
890 1 0.00
891 2 0.00
892 2 0.00
894 2 0.00
895 4 0.00
896 1 0.00
899 2 0.00
900 4 0.00
901 5 0.00
902 3 0.00
904 1 0.00
905 5 0.00
906 137 0.06
907 83 0.04
908 114 0.05
909 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (867 bp):
GTTCATTCCCAGTCTAAGATCGGATCGGACTAGGTTGGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACG
GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCCATAGCCACTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGAACCGTAAAAA
GTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTG
CCCGCCCGCCTCCGCCCCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCGGACCAGACCGAGGGTTACAATAGCACAAGAGAGGCCCGACCATGTGCTGGATCCAC
AACCTTCTTGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACAGA
Found at i:19556153 original size:26 final size:26
Alignment explanation
Indices: 19556117--19556169 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19556107 GTTACCTTAG
*
19556117 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19556143 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19556169 G
1 G
19556170 ATAGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19560421 original size:26 final size:26
Alignment explanation
Indices: 19560366--19560421 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19560356 TGGGTTGACT
* *
19560366 TAAGCATACGGAGTTCATTCCCAGTG
1 TAAGCATACGGAGTTCATTCCCAATC
*
19560392 TAAGCATACGGAGTTCTTTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
19560418 TAAG
1 TAAG
19560422 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:19561232 original size:886 final size:884
Alignment explanation
Indices: 19556856--19562042 Score: 6465
Period size: 899 Copynumber: 5.9 Consensus size: 884
19556846 GTTGGCTTAG
* * * * *
19556856 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACCGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19556921 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCA---CC--G--T--CGAAGAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCCGAGCATCGCGGAGAAC
* * * * *
19556977 CTGA-CGACGGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGTGTACATGATGTGAGA
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGA
*
19557041 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19557106 CCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGTCAGTAG-CACTTAAAGTGTCTGAAATGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATGG
*
19557170 GGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * **
19557235 CATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGTGGTTAAAACTCCTTCCGAAAAAAT
390 CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
19557299 TTTAACAAATCCTGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
19557363 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
19557428 TGGCACT-CAGAAATACGAAGACGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCG
584 TGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
19557492 CATCCCGTCTCTCTGGCCGGCATAGT----GCCCGCCCGCCCGCTCGTTTCATCGGTTTGCTTAG
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** ** *
19557553 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATTAGACTGAGGGTTGCGGCCGCAGGTTTGACA
713 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTT------GCA-----G-CA
* * * * * *
19557618 GAACACAGAGGGGGACCTGGTTGAT-CCCTAGCTTGCGCGTCCCGCCCCTCTGGCCGGCTGAGCG
765 GCACGCAGAGGGGGACCCGGTCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
19557682 CCCGCAAGCTCGTTTTATGGGTTCACTTGGGCATACGGAGTTCATTCCCAGTCTAA
829 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * * * * * *
19557738 GCATACGGAGTTTATTCCCAGTCGAAGATCGGACTGGACCTAGGGTTGCGGCAGCACATGCTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19557803 CTCGGGCTTGTGCTGGTGCCGCATTTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGTCGGGGCACCATCTCC-GAGCATC-GCGGAG
* * * *
19557868 AACCTGACCGACGGCATTAGGGTTCCGGCAATCGGGGCGGCCGGGGGGTGTGCGCACATGATGTG
128 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
19557933 TGATAGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * ** *
19557998 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAATAGTTATTAAAGTGTTTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
19558063 GGCGATACTTTTTTCCAATGGTCACAAAATCTTGTGCACTTCAAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
19558128 TGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGCGACCAAAATTCCTTGCAAAAAA
388 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
19558193 ATTTTAAAAAATCTCGAACCGCTAAAAAGTTTCGTAAATCATGAAAAATGGAAAACGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19558258 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19558323 ATTGGCATGCT-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 ATTGGCATG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19558387 CGCATCCCGTCTCTCTGGCCAACGTAGTGCCCACCCGCCCGCCCGCCCGTTCGTTTCGTCGATTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * *** * *
19558452 GCTTAAGCATATGGAGTTCATT-AAGATC--AGACCCGATCGAGGGTTGCAGGAAGTAGGATCGG
707 GCTTAGGCATACGGAGTTCATTCCAG-TCTAAGATCAGA-CCA-GACCG-AGG--GT-TG--CAG
* * * *
19558514 CAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGATGAGA
763 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
19558579 GCACCAACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA--GT--
828 GC-CC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
*
19558634 -C-TA---AG---A-T--C-G-----GAT-----CGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
19558677 CTCGACCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCTTCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCC-GAGCATCG-CGGAGA
** * * * * *
19558742 AGTTGACAG-CAGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGTGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
* * *
19558806 GATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTAATCAAACCTCCAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** *
19558871 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTATTGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19558936 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAAATTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19559001 GCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAA
389 GCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** * *
19559066 TTTTAAAAGATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
**
19559131 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
19559196 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
19559261 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTAGTCGGTTGGCTTAGG
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
*
19559326 CATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGATCGGTAG
714 CATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCAGC---A-G--C-----
* * * *
19559391 AACGCAGAGGGAGACTCGGCCGATCCCCGACTTGCGCATCCCGCCCGTCTGGCCGGCTGAGCGCC
767 -ACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * **
19559456 TGCACGCTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCCAA
831 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * * * *
19559510 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGA-CGAAGGGTTGCAGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG-AGGGTTGCGGCAGCACATGCTGG
* * *
19559574 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCCGAGCATCG-CGGAG
* * * * * ** * *
19559639 AATCTGACCGACGGCATCGGGGTTTCGATGATC-GGAGGGATGGAGGGGTCTGTGCACATGATGT
128 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGT
* * * *
19559703 GTGGTGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATGCCTCATCAAACCTCCAGAACTCA
192 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19559768 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19559833 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGAATTATTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * **
19559898 GTGAAAGCCCACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCTAAA
387 GTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
19559963 AATTTTAAAAAATCTCGAACCGTAAAAAGGTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
19560028 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19560093 ATTGGCACGTAGAAATATGAAGATGTG-CTAAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 ATTGGCATGTAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19560157 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCCCGCCCGTCCGCACGTTTCATCGGTTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTG
** ** * * * *
19560222 GCTTAGGCATACGGAGTTCAAACCAAACTAAGGGTTGCAG--CAG--C-AGGATCG-A-AAG-AC
707 GCTTAGGCATACGGAGTTCATTCCAGTCTAA--GAT-CAGACCAGACCGAGGGTTGCAGCAGCAC
* * *
19560279 ACAGAGGGGGACCCGATCGATCCCCTG-CTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCG
769 GCAGAGGGGGACCCGGTCGATCCCC-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
19560343 CACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTGTAA
833 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* * * *
19560395 GCATACGGAGTTCTTTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCTGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
19560460 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCC-GAGCATCG-CGGAGA
* * * * *
19560525 ACCTGACCGACGGTATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGGTATGCGCACGTGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
19560590 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGACAACTCAC
193 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19560655 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTCAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19560720 GGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCAATTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19560785 TGCACGCCAA-AAAAATAAAAAGATCACGTCTACCAAGTTTGGGG-CAAAACTGCTTCCGAAAAA
388 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
19560848 ATTTTAAAAAATCCCGAACCGTGAAAGGTTTCAACAATCGTGAAAAATAGAAAACGACTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
19560913 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19560978 TTAGCATGTAGAAATATGAAGATTTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
19561043 CATCCTGTCTCTCTGGCTGGCGTACTGCCCGCCCGTCCGCCCACTCGTTTCGTAC-ATTGGCTTA
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT-CGGTTGGCTTA
*
19561107 GGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACGTAGAGG
712 GGCATACGGAGTTCATTC-CAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACGCAGAGG
* * * * *
19561172 GTGACTCGGCCGATCACCGACTTGCGCATCCC-CCCCTCTGGCCGGCTTGAGCGGCCGCACGCTC
776 GGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC-TGAGCGCCCGCACGCTC
* * * *
19561236 ATTTTATGGGTTGACCTAGGCATACGGAGTTCATTCCTAGTGTAA
840 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
* *
19561281 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19561346 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACTAT-T----G--T--CGGAGAAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCCGAGCATCGCGGAGAAC
* * *
19561402 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGA
* * *
19561467 TGGGTGCTAGTACTTGGCCCTTATATTGGCCACCTATCCTTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19561532 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCCTTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
** * *
19561597 GACACTTTTTTCAAATGAACACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTATTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
19561662 ATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
391 ATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
19561727 TTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATTGTAAAAAATAGAAAATGAGTCGTCTTGCC
456 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
19561792 ATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * ** **
19561857 GCATGCAGAATTATGAAGATATGTGTAAACCCACCTACCACTTTATCGATCCACGGCTTGCGCAT
586 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
19561922 CCCGTCTCTCTAGCTGGCGTAGTGCCCGCCTGCCCGCCAGCCCGTCCGCCCGCTCGTTTCGTCGG
651 CCCGTCTCTCTGGCCGACGTAGTG--C-CC-G--C-CC-G--C--CCGCCCGCTCGTTTCGTCGG
* * * *
19561987 TTGGCTTAGGCATATGGAGTTCATTCCCACTCTAAGATCAGACCGGAACGAGGGTT
704 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTT
19562043 ACGGTAGCAC
Statistics
Matches: 3732, Mismatches: 444, Indels: 252
0.84 0.10 0.06
Matches are distributed among these distances:
862 3 0.00
864 1 0.00
865 3 0.00
866 1 0.00
867 51 0.01
868 5 0.00
869 4 0.00
870 7 0.00
871 188 0.05
872 335 0.09
873 45 0.01
874 310 0.08
875 74 0.02
876 217 0.06
877 1 0.00
878 7 0.00
879 7 0.00
880 46 0.01
881 9 0.00
882 75 0.02
883 27 0.01
884 229 0.06
885 292 0.08
886 403 0.11
887 4 0.00
888 68 0.02
889 2 0.00
891 3 0.00
893 3 0.00
894 13 0.00
895 239 0.06
896 65 0.02
897 184 0.05
898 148 0.04
899 494 0.13
900 46 0.01
901 1 0.00
902 11 0.00
903 51 0.01
904 8 0.00
905 50 0.01
907 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCCGAGCATCGCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACGCAGAGGGGGAC
CCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCA
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
Found at i:19561291 original size:26 final size:26
Alignment explanation
Indices: 19561255--19561307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19561245 GTTGACCTAG
* *
19561255 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19561281 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19561307 G
1 G
19561308 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19562920 original size:25 final size:26
Alignment explanation
Indices: 19562871--19562922 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19562861 GTTGACTTAG
*
19562871 GCATATGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTTCCAATCTAA
*
19562897 GCATACGGAGTTCA-TTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAATCTAA
19562922 G
1 G
19562923 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAATCTAA
Found at i:19563806 original size:26 final size:26
Alignment explanation
Indices: 19563769--19563818 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
19563759 GTTGACTTAG
*
19563769 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19563795 GCATAC-GAAGTTCATTCCCAGTCT
1 GCATACAG-AGTTCATTCCCAGTCT
19563819 TAGATCGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19565696 original size:894 final size:894
Alignment explanation
Indices: 19563962--19565817 Score: 2794
Period size: 894 Copynumber: 2.1 Consensus size: 894
19563952 GTTGACTTAG
* * * *
19563962 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCAAGTGTTACGGCAGCACATGCTAGG
1 GCATA-GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
19564027 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGCACGATCATCGGAGCATCGTCGGAGAA
65 CTCAGGCATGTGCTGGTACCACATTTTTCTTCGTCGGGCACAATCATCGGAGCATCGTCGGAGAA
* *
19564092 CCTGACCGATGGTATTGGGGTTCCGACGAACGGGGGGACCGGGGGGGTTGTGCGCACTAGATGTG
130 CCTGACCGACGGCATTGGGGTTCCGACGAACGGGGGGACCGGGGGGGTTGTGCGCACTAGATGTG
* *
19564157 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACAAAC
195 CGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACAAAC
* *
19564222 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTCCTGCTAGTAGCCATTAAAGTGTCTGAAAT
* * *
19564287 GGGGACACTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 CGGGACACTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
19564352 GCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTGGCGCCAAAAATCCATCCGTAAAAAA
390 GCATGCCAAAAAAATACAAGGAGCACATCTACCAAGTTTGGCGCCAAAAATCCATCCGAAAAAAA
* * *
19564417 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTCTCG
455 TTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCCACTCG
* * *
19564482 CCATGAAATTTCCCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACATGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCAT
19564547 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCGC
* * ** *
19564612 ATCCCATCTCTCTGGCCGGCGTAGTGCTCGCTTGCCCGCTCGTTTCGTCGGTTGGCCTAGGCATA
650 ATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCCTAGGCATA
* *
19564677 CGGAGTTCATTCCCAACCTAAGATCAAACTGGACCAAGGGTTGCGGCCGCAGGATTGGCAACACG
715 CGGAGTTCATTCCCAACCTAAGATCAAACTGGACCAAGGGTTGCAGCAGCAGGATTGGCAACACG
* * * *
19564742 CAGAGGGGGACCCGATCGATCCCTGGCATGCGCATCCCGCCCCTCTGGGCTGCTGAGCGCCCGCA
780 CAGAGGGGGACACGACCGATCCCTGGCATGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
19564807 CGCTT-GTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAA
845 CG-TTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
19564856 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTAGG
1 GCATA-GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
19564921 CTCAGGCTTGTGTTGGTACCACATTTTTCTTCGTCGGGGCACAATCGTCGGAGCATCG-CTGGAG
65 CTCAGGCATGTGCTGGTACCACATTTTTCTTCGTC-GGGCACAATCATCGGAGCATCGTC-GGAG
* * * * *
19564985 AACCTGACCGGCGGCATTGGGGTTCTGATGATCGGGGGGGCC-GGGGGGTGTGTGCGCAC-ATGA
128 AACCTGACCGACGGCATTGGGGTTCCGACGAACGGGGGGACCGGGGGGGT-TGTGCGCACTA-GA
*
19565048 TGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAAC
191 TGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
** * * *
19565113 TCACACCCCCTTAAGGCGAATTTGAGATTTTTCAGGTTTCCTG-TCAGTAGCCATTAAAGTGTCT
256 AAACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTCCTGCT-AGTAGCCATTAAAGTGTCT
*
19565177 GAAATCGGGATACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTT
320 GAAATCGGGACAC-TTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTT
* *
19565242 TTTTGTGCATGCCAAAAAAAATACAAGGAGCACATCTACCAAGTTTGG-GGCAAAAATCCTTCC-
384 TTTTGTGCATGCC-AAAAAAATACAAGGAGCACATCTACCAAGTTTGGCGCCAAAAATCCATCCG
*
19565305 AAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATAGTGAAAAGTAGAAAACGAGT
448 AAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGT
* * *
19565370 CGACTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAA-TTACAAGCCATAAAA
513 CCACTCGCCATGAAACTTCACATGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAA
* *
19565434 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAG
* *
19565499 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTT
643 CTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCCT
** *** *** *
19565564 AGGCATACGGAGTTCATTCCCAGTCTAAGATGGGACTGGATTGAGTGTTGCAGCAGCAGGATTGG
708 AGGCATACGGAGTTCATTCCCAACCTAAGATCAAACTGGACCAAGGGTTGCAGCAGCAGGATTGG
* * * *
19565629 CAGCACGCAGAGGGGGACACGACCGATCCCTGGCTTGCGCATCCTGGCCCTCTGGCCGGCTGAGC
773 CAACACGCAGAGGGGGACACGACCGATCCCTGGCATGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
19565694 GCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
838 GCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * * * *
19565751 GCATACGAGTTCATTCTCAGTCTAAGATCAGACCGGAGCGATGGTTGCGGCAGCACATACTGGGC
1 GCATAGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGGC
19565816 TC
66 TC
19565818 GGTCAAAATG
Statistics
Matches: 865, Mismatches: 88, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
893 2 0.00
894 432 0.50
895 323 0.37
896 75 0.09
897 33 0.04
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
GCATAGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGGC
TCAGGCATGTGCTGGTACCACATTTTTCTTCGTCGGGCACAATCATCGGAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGAACGGGGGGACCGGGGGGGTTGTGCGCACTAGATGTGC
GATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACAAACA
CCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTCCTGCTAGTAGCCATTAAAGTGTCTGAAATC
GGGACACTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAATACAAGGAGCACATCTACCAAGTTTGGCGCCAAAAATCCATCCGAAAAAAAT
TTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCCACTCGC
CATGAAACTTCACATGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCGCA
TCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCCTAGGCATAC
GGAGTTCATTCCCAACCTAAGATCAAACTGGACCAAGGGTTGCAGCAGCAGGATTGGCAACACGC
AGAGGGGGACACGACCGATCCCTGGCATGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GTTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:19565765 original size:25 final size:26
Alignment explanation
Indices: 19565725--19565776 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
19565715 GTTGACTTAG
19565725 GCATACGAAGTTCATTC-CTAGTCTAA
1 GCATACGAAGTTCATTCTC-AGTCTAA
19565751 GCATACG-AGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
19565776 G
1 G
19565777 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:19566816 original size:26 final size:26
Alignment explanation
Indices: 19566787--19566839 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19566777 GTTGACTTAG
* *
19566787 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
*
19566813 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
19566839 G
1 G
19566840 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAATCTAA
Found at i:19568183 original size:889 final size:888
Alignment explanation
Indices: 19565917--19569719 Score: 4659
Period size: 889 Copynumber: 4.3 Consensus size: 888
19565907 GTTGACTTAG
* * * * * *
19565917 GCATACGTAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCAAGTGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
** * * * * *
19565981 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACGATCACCGGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGCCGGAG
* ** * * *
19566046 AACCTGATCGGTGGCATTGGGGTTCCGACAATCGAGGGGGTCGGGGGGTGTCCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
19566111 CGATTGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19566176 ACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
19566241 GGAAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * * *
19566306 TGCATGCCAACAAAAAATACAAGGACCATGTCTACCAAGTTTATGGTCAAAAATCCTTTCAAAAA
389 TGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * *
19566371 AATTTAAAAAAATC-CTGAACCCCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
453 AATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
** **
19566435 TTGCTGTGAAACTTCATATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
19566500 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
19566565 CGCATCCCGTCTCTCTGGCCGTCGT-GCTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGG
647 CGCATCCCGTCTCTCTGGCAG-CGTAG-T----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** * *
19566629 TATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCGACAG
706 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC-GAGGGTTGCGATAGCAGGATCGGCAG
* * * *
19566694 CACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCC
770 CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* * *
19566759 CGCATGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAA
835 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19566813 GCATACAGAGTTCATTCCCAATCTAAGATCGGA-TAGGACCGAGGGTTGCGGTAGGACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
19566877 GCTCGTGCATGTGATGGTGCCACATTTTTCTTCGTCGGGGCACCATAG-CGAAAGTATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG-AAGCATCGCCGGA
* *** * **
19566941 GAACCTGACCGGCGGCATTAATGTTTCGGTGATCGGGGGGGCCGGCGTGGGTGTGCGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGG-G-GGGTGTGCGCACATGAT
* *
19567006 GTGTGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
19567071 CATA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19567135 AATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *** *
19567200 TTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCTAAAAAAACTTTTGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
** ** *
19567265 AAAATTTTAAAAAAT-TCCGAACCGCAAAAAGGATCCAAAATCGTGAAAAATAAAAAACGAGTCG
451 AAAATTTTAAAAAATCT-CGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
19567329 TCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTTTGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * * *
19567394 GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCGTATCGGTCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19567459 TGCGCATCCCGTCTCTATGGCTAGCGTAGTGCCCGCTCGCTCGTTTCGTCGGTTGGATTAGGCAT
645 TGCGCATCCCGTCTCTCTGGC-AGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * *
19567524 ACAGAGTTGATTCCCATTCTAAGGTCAGACCGAACTATGGGTTGTGACAGTAGGATCGGCAGCAC
709 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACGA-GGGTTGCGATAGCAGGATCGGCAGCAC
* *
19567589 ATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
773 GTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
* * * * *
19567654 ACGCTCATTTCGTGGGTTGACTTACGCATACAGAGTTCATTCCTAGTTTAA
838 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19567705 GCATATGGAGTTCATTCCCAGTCTAAGATC-GACTGGACCTAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19567769 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCCGAAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGCCGGAGA
* *
19567834 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
19567899 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
19567964 CCCCTTGAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19568029 GGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTCAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
19568094 CATGCCAACAAAAATACAAGGATCACATCTACGAAGTTTCGGGCCAAAACTCCTTTCGAAAGAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* ** * * * *
19568159 TTTAAAAAATCTTGAACCGCAAAAAGGATCAAAAATTGTGAAAAATAAAAAACGAATCGTCTTGC
456 TTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
19568224 CATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
19568289 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACTTATCGATCCATGGCTTGCGCA
586 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
19568354 TCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAG
651 TCCCGTCTCTCTGG-CAGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * * ** * *
19568419 TTCATTCCTAGTCTAATATCGGACAGGATCAAGGGTTGGGACAGCAGGATCAACAGCATGCAGAG
715 TTCATTCCCAGTCTAAGATCAGAC-CGAACGAGGGTTGCGATAGCAGGATCGGCAGCACGTAGAG
* * * * **
19568484 GGGGACCTGATCGATCCCCGGCTTGCACATCCCGCCCCTCTAGCCGGTTGAGCGCCCGCACGCTC
779 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* * *
19568549 GTTTCGTGGGTTGACTTACGCATACGAAGTTCATTCCTAGTCTAA
844 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19568594 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACTGGACCAAAGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * * *
19568659 ATCGAGCATTTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCATCACCGGAGAATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGCCGGAGA
** *
19568724 ACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGG-CGGGGGGATGTGCGCATATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGC
* * *
19568788 GATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCATA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19568853 CCCCCTTAAAGAGAATTT-AGGATTTTACAGGTTTGCTGCC---AGCCATTAAAGTGTCTGAAAT
260 CCCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
19568914 GGGGACACTTTATTCAAATGGTCCCAAAATCTTGTACACTTAGAGTTTTTTGCTAAATTTTTTT-
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19568978 TGTATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCC-TTCTGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAA
* * * * * * *
19569042 AATTGTAAAAAATCTCGAATCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCATCT
453 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
19569107 TGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCGTTTTATGAATTTAGAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19569172 ATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCACATACCACTCTATCGATCAACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
19569237 GCATCCCATCTCTCTGGCCGATGCAGTGCCCGCCCGCCCGCCCGCTAGTTTCATCGGTTGGCTTA
648 GCATCCCGTCTCTCTGG-C-A-GC-GT---AG--TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * * * * * * *
19569302 GGCATACAGAGTTCATTCCCAGTTTAAGATTGGACCAGACCGATGGTTGTGACAACAAGATCGGT
704 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACGAGGGTTGCGATAGCAGGATCGGC
** ** ** * * * *
19569367 AGCACCCAGAGATGGACCCGATTGATCCCCGGCTTACGTATCCTGCCCCTTTGGCCGACTGAGCG
768 AGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * * ** * *
19569432 CCTGCACGCTTGTTTCGTGTGTTGACTTACACATACGAAGTTCATTCTCAGTCTAA
833 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
19569488 GCAAACGGAGTTCTTTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19569553 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCC-AGAGAATCGCTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGA-AGCATCGCCGGAG
** * * ** * * ** * **
19569617 AACCTGGGCGATGGTATTGGGGTTTGGGCGATCGAGAAGCCAGGGGGGTGTACAAACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
19569682 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
19569720 CTAGCCCACT
Statistics
Matches: 2530, Mismatches: 346, Indels: 63
0.86 0.12 0.02
Matches are distributed among these distances:
885 3 0.00
886 240 0.09
887 77 0.03
888 85 0.03
889 591 0.23
890 248 0.10
891 106 0.04
892 218 0.09
894 314 0.12
895 53 0.02
896 382 0.15
897 134 0.05
898 79 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCAGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGAACGAGGGTTGCGATAGCAGGATCGGCAGCACGTAGAGGG
GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19568605 original size:26 final size:26
Alignment explanation
Indices: 19568568--19568620 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19568558 GTTGACTTAC
19568568 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
19568594 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCTAGTCTAA
19568620 G
1 G
19568621 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:19570665 original size:26 final size:26
Alignment explanation
Indices: 19570629--19570681 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19570619 CTTCACATTG
19570629 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19570655 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19570681 G
1 G
19570682 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19571572 original size:26 final size:26
Alignment explanation
Indices: 19571532--19571582 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19571522 TCACTTAGGA
*
19571532 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTAATTCCCAGTCTAAGC
*
19571558 ATACGGAGTTAATTCCCAGTTTAAG
1 ATACGGAGTTAATTCCCAGTCTAAG
19571583 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTAATTCCCAGTCTAAGC
Found at i:19572033 original size:26 final size:26
Alignment explanation
Indices: 19571989--19572040 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19571979 AAAAATCCTT
* *
19571989 CCAAAAAAATTTTAAAAAATCTTGAA
1 CCAAAAAAAGTTTAAAAAATCGTGAA
**
19572015 CCAAAAAAAGTTTCCAAAATCGTGAA
1 CCAAAAAAAGTTTAAAAAATCGTGAA
19572041 AAATAGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (26 bp):
CCAAAAAAAGTTTAAAAAATCGTGAA
Found at i:19573347 original size:26 final size:26
Alignment explanation
Indices: 19573317--19573369 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19573307 GTGGACTTAG
*
19573317 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
**
19573343 GCATAGGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
19573369 G
1 G
19573370 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:19575096 original size:26 final size:26
Alignment explanation
Indices: 19575060--19575112 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19575050 GTTGACTTAG
*
19575060 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19575086 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19575112 G
1 G
19575113 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19577661 original size:26 final size:26
Alignment explanation
Indices: 19577632--19577684 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19577622 GTTGACTTAG
*
19577632 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19577658 GCATAGGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19577684 G
1 G
19577685 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19582144 original size:26 final size:26
Alignment explanation
Indices: 19582108--19582160 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19582098 GTTAACTTAG
19582108 GCATACGGAGTTCATTCACAGTATAA
1 GCATACGGAGTTCATTCACAGTATAA
* *
19582134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTATAA
19582160 G
1 G
19582161 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTATAA
Found at i:19583044 original size:26 final size:26
Alignment explanation
Indices: 19583014--19583066 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19583004 GTTAACTTAC
19583014 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19583040 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19583066 G
1 G
19583067 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19583672 original size:905 final size:901
Alignment explanation
Indices: 19577273--19587174 Score: 11816
Period size: 903 Copynumber: 11.1 Consensus size: 901
19577263 CCGAACAGCA
* *
19577273 GTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** ** *
19577338 TGATGTTGGCACGTAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGC
66 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
19577403 TTGCGCATCTCGTCTCTCTGGCCGGC--A-TG-GTGCCCGCCCGCCTGCTCGCTCGTTTCATCGG
131 TTGCGCATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCGCC-GCCCGCTCATTTCGTCGG
* * * * * *
19577464 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTG-TGATAGT
195 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-TAGT
* * * * * * * *
19577528 AGGATTGACAGCACATAGAGGGGGACCCGGTTCATCCCCGGGTTGCGCATCCCACCCCTATGGCT
259 AGGATTGGCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
* * * * *
19577593 GGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
324 GACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * * *
19577658 GCATAGGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATATTGGG
389 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGTTGGG
* * * * ** * * * **
19577723 CTCGAGCATGTGCTAGTGCCGCCTGTTTCTTCGCTGGGGCACCATCACCAGAGCTTCGCTTGAGA
454 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGC-CGGGCACCATCGTCGGAGCATCACCGGAGA
* * *** ** ** * *
19577788 ACCTGACAGATGGCATTGGGGTTCCGACGATCGGGGTTTCGATGGGGTGTGCAAACATGATCTGT
518 ACCTGACCGATGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
**
19577853 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAATTCGAGAACTCACA
583 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
19577918 CCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCGTTAAAGTGTCTGAAGTG
648 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
19577983 AGGATACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTATGT
713 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** *
19578047 GCATGCCGGAAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCC-AAACTCCTTCCGAAAAAA
778 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
19578111 -TTTAAAAAATCCC-TACCAGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTC
843 TTTTAAAAAATCCCGAACC-GCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
*
19578169 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
19578234 TGGCATTGGCACACAGAAATATGAAGATGTCCCTAAACCCACCTAACACCCTATCGATCCATGGC
66 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** * * *
19578299 TTACGCATCTCGTCTCTCTGACCGATGTAGTACCCGCCCGCCCGCCCGCCCGGTCATTTCGTCGG
131 TTGCGCATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCG-CCGCCCGCTCATTTCGTCGG
* * * *
19578364 TTGGCTTAGGCATATGGAGTTAATT-CC---C--AGATCAGACCAGACCTAGGGTTGCAGTAGCA
195 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGTA
* ** * * * * * *
19578423 GGATCGGCAACACACAGATGGGGACCTGACTGATCCCCGGCTTACGCATCCCGCCCCTCTGGTCG
260 GGATTGGCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
** * * *
19578488 GTTGA-ACGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTC
325 ACTGAGA-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTA
* ** * * *
19578551 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGA-TAGAGGGTTACGGTAGCACATGCTA
388 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGTAGCACATGTTG
* * * * * * *
19578615 GGCTCGAGCAAGT-TTCGATGCCGCATTTTTCTTCACCGGAGCAGCATCGTCAGAGCATCACCGA
452 GGCTCGAGCATGTGCT-GGTGCCGCATTTTTCTTCGCCGG-GCACCATCGTCGGAGCATCACCGG
* * * * * * * * *
19578679 AGAACCTAATCGACGGCATTGGGGTTTTGTCGATCGGGGGGGTCGGGAAGGGTCTGCACACATGA
515 AGAACCTGACCGATGGCATTGGGGTTTCGACGATC-GGGGGGCCGGG-GGGGTGTGCGCACATGA
* * *
19578744 TGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTTGAGAAC
578 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
19578809 TCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTG
643 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * * *
19578874 TAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGT
708 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
19578939 TTTGTGCATGCCAACAAAACTACAAGGATCATGTCTGCGAAGTTTGGGGGCAAAACTCCTTCCGA
773 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
19579004 AAAAATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTC
838 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* *
19579068 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGTCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
19579133 TGTCATTGGCACACAAAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
66 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * * * *
19579198 TGGCGTATCCCGTCTCTTTGGCTGGCATAGTGCC-CCCCGCCCGCTCGCCCGTTCGTTTCATCGG
131 TTGCGCATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCGC-CGCCCGCTCATTTCGTCGG
* *
19579262 TTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAGATCAAACCAGACCGA-GG--GC--TA-T-
195 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGTA
** * * * ** *
19579320 -GA----CAACACCCAGAGGGGCACCCGACCGATCCCCGGCTTGCGCATCCCGTCCCTCTCGCCG
260 GGATTGGCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
* * * * ** * * *
19579380 GCTGAGCGCCTGCACACTCGTTTAATGGGTTGACATAGGCATGCAAAGTTCATTCCCAGTCTAAG
325 ACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
* * * ** * *
19579445 CATATGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCACATGTTGGGC
390 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGTTGGGC
* * * * * ** * * *
19579510 TCGGGCAT-TTCTTGGTGCCACATTTTTCTTCGTCGGGGTACCATCACCGGAGTATCATCGAAGA
455 TCGAGCATGTGC-TGGTGCCGCATTTTTCTTCG-CCGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
19579574 ACCTGACCGATGGCATTAGGGTTCCGATGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTG
518 ACCTGACCGATGGCATTGGGGTTTCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
19579639 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAATCCCTCACCAAACCTCGAGAACTCA
582 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCA
19579704 CA-CCCCTTAAAGAGCATTTGA-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
646 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19579767 TGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
711 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19579832 GTGCATGCCAACAAAACTACAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAA
776 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
19579897 AATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTG
841 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
19579958 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-TAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAA
* *
19580022 ATGGCATTGGCACACAGAAATATGAAGATGTCCCTAAACCCACCTAACACCCTATCGATCCACGG
65 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
19580087 CTTGCGCATCTCGTCTCTCTGGCAGGCGTAGTACCTGCCCGCCCGCCTGCCCGATCATTTCGTCG
130 CTTGCGCATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCGCC-GCCCGCTCATTTCGTCG
* * * * * *
19580152 GTTGGCTTAGGCATACTGAGTTAATTCCCAGTCTAAGATCTGGCCAGACCTAGGGTTGCAGTAGC
194 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGT
* * * ** * * * * * **
19580217 AGGATCGGTAGCACACAAATGGGGACCCAGCCGATCCCCGGTTTGCGCATCCTGCCCCTCTGGCC
259 AGGATTGGCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
* * * * *
19580282 TACTGA-ACGCCCACACCCTCGTTTTGTGGGTTAACTTAGGCATAC-AGAGTTCATTCCCAGTCT
324 GACTGAGA-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCT
* ** * *
19580345 AAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGA-TAGAGGGTTACGGTAGCACATGCT
387 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGTAGCACATGTT
* * * ** *
19580409 AGGCTCGGGCATGT-TTCGGTGCCGCATTTTTCTTCATCGGAGCAGCATCGTCGGAGCATCACCG
451 GGGCTCGAGCATGTGCT-GGTGCCGCATTTTTCTTCGCCGG-GCACCATCGTCGGAGCATCACCG
* * * * * * * *
19580473 AAGAACCTAACCAACGGCATTGGGGTTCCGCCGATCGAGGGGGCCGGGGAGGGTCTGCGCACATC
514 GAGAACCTGACCGATGGCATTGGGGTTTCGACGATCG-GGGGGCCGGGG-GGGTGTGCGCACATG
* * *
19580538 ATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTTGAGAA
577 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
19580603 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTCGCTG-CA-TAGCCATT-AAGTGTCT
642 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
19580665 -ATAGTGGGGACATTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATT
707 GA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * * *
19580729 TTTTTATGCCTCCCAAAAAAAATACAAGGATCATGTCCA-AAAGTTTGGGGCCAAAAAATCCTTC
771 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTC
* ** * *
19580793 C-AAAAAATTTAAAAAAATTCCAAAACCGTAAAAAGTTTT-GAAATCGTG-AAAATAGAAAACGA
835 CGAAAAAATTTTAAAAAA-TCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
19580855 GTC
899 GTC
*
19580858 GTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** *
19580923 TGGCAATT-GCATGCAAAAATATGAAGATGTG-CTGAAACCCACCTACCACCCTATCGATCCACG
66 TGGC-ATTGGCACACAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACG
* * * * *
19580986 GCTTGCGCATCTCGTCTCTCTGGCTGGC--A-TG-GTGCCCG--C-CTGCTCGCTCGTTTCGTCG
129 GCTTGCGCATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCGCCGCCCGCTCATTTCGTCG
* * *
19581044 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAAGGTTGC-GATAG
194 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-TAG
* * * * * * *
19581108 TAGGATTGACAGCACGTAGAGGGGGACCTGACTGATCCTCGACTTACGCATCCCACCCCTCTGGC
258 TAGGATTGGCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGC
* * * * * * * * *
19581173 CGGCTGAGCGCTCGCACGATCGTTTCATTGGTTGACTTAGGCAGAGGGAGTTCATTCCCAGTCTA
323 CGACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
* ** * * * *
19581238 AGCATAGGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCACATATTGG
388 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGTTGG
* ** * *
19581303 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTTGGGCACCATCACCGGAGCATCGCTGGAG
453 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGC-CGGGCACCATCGTCGGAGCATCACCGGAG
* *** * * *
19581368 AACCTGACCGGTGGCATTGGGGTTTCGACGATCGAGGTTTCGGGGGGGGTGTGCGCACATAATCT
517 AACCTGACCGATGGCATTGGGGTTTCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGT
* ** *
19581433 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAAATTTGAGAACTCA
581 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19581498 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
646 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19581563 TGGTGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTAT
711 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19581628 GTGCATGCCGAAAAAAATACAAGCATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAA
776 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
19581693 AATTTTAAAAAATCCTGAACTGCGAAAAGTTTTAAAAATCGTGAAAAATAGAAAAGGAGTC
841 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
19581754 GTCTTGCCATGAAACTTCACGTGATGG-TTAAGGGACCATTGTATGAAATTACAAGTCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19581818 TGGCATTGGCACACA-AAATATGAAGATGTGCCTAAAACCCACCTACC-CCTTATCGATCCACGG
66 TGGCATTGGCACACAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGG
*
19581881 CTTGCGCATCTCG--TCTCTGGC-CGCGTAGTGCCTGCCCG--C-CCGCCCGCTCATTTCGTC-G
130 CTTGCGCATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCGCCGCCCGCTCATTTCGTCGG
** * *
19581939 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTGACCAGACCGAGGGTTGCGGTAAGC
195 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGT-AGT
* * * *
19582004 AGGATTGGCAACACGTAAAGAGGGACCTGGCCGATCCCCCGGCTTGCGCAT-CCACCCCTCTGGC
259 AGGATTGGCAACACGTAGAGGGGGACCCGGCTGAT-CCCCGGCTTGCGCATCCCACCCCTCTGGC
* * * *
19582068 CGACTGAGAGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCACAGTATA
323 CGACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
19582133 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGTT-G
388 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGTTGG
* * * *
19582197 GCTCCGAACATGTACTGGTGCTGCATTTTTCTTCGCCAGGGCACCATCGTCGAAGCATCAACCGG
453 GCT-CGAGCATGTGCTGGTGCCGCATTTTTCTTCGCC-GGGCACCATCGTCGGAGCATC-ACCGG
* * *
19582262 AGAACCTGACCG-TGGCATTGGCGTTTCTGATGATCGGGGGGGCCAGTGGGGGTGTGCGCACATG
515 AGAACCTGACCGATGGCATTGGGGTTTC-GACGATC-GGGGGGCC-GGGGGGGTGTGCGCACATG
* * * *
19582326 ATGTGCAATGGGTACTAGTACTTAGG-CCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGA
577 ATGTGCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
19582390 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTC
641 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
19582455 TGAAATGGGGATAGTTTTTCCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATT
706 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * * *
19582520 TTTTTATGCCTGCCAAAAAAAATAGAAGGATCATGTCTACCAAGTTTGGGGCTAAAACGCCTTCT
771 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
19582585 GAAAAAGTTTTAAAAAATCCTGAACCGCAGAAAGTTTTGAAAA-CAGTGAAAAATAGAAAACGAG
836 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATC-GTGAAAAATAGAAAACGAG
19582649 TC
900 TC
* *
19582651 GTTTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
19582716 TGGCATTGGCATGCAGAAATATGAGGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGC
66 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
19582781 TTGCACATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGG
131 TTGCGCATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCG-CCGCCCGCTCATTTCGTCGG
** *
19582846 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTGACC-GAACCGAAGGTTGCAGTAGT
195 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGTAGT
* * * * *
19582910 AGGATCGGCAACACGTTGAGGGGGACCTGGCTGATCCCTGGCTTGCGTATCCCACCCCTCTGGCC
259 AGGATTGGCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
* * *
19582975 GACTGAGAGCCCGCACGCTCGTTTCATGGGTTAACTTACGCATACGAAGTTCATTCCCAGTCTAA
324 GACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
19583040 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTGCAGTAGCACATGTTGGG
389 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGTTGGG
* * * * * *
19583105 CTCGGGCATGTACTGGTGCTGCATTTTTCTTTGCCAGGGCACCATCGTCGAAGCATCGCCGGAGA
454 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCC-GGGCACCATCGTCGGAGCATCACCGGAGA
* * * * *
19583170 ACCTGGCCGACGACATTGGCGTTTCGACGATCGGTGGGGCCAGTGGGGGTGTGCGCACATGATGT
518 ACCTGACCGATGGCATTGGGGTTTCGACGATCGG-GGGGCC-GGGGGGGTGTGCGCACATGATGT
* *
19583235 GCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
581 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19583300 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
646 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19583365 TGGGAACAATTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTT
711 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** *
19583430 GTGCATGCCAGCAAAAATACAAGGATCACGTCTACCAAGCTTGAGGG-CAAAACTCCTTCCGAAA
776 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGCCAAAACTCCTTCCGAAA
* *
19583494 AAATTTTAAAAAATCCCGAACAGCATAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
840 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* * **
19583556 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAATTCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
19583621 TGGCATTGGCATGCAGACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGC
66 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* **
19583686 TTGCGCATC-CTGTCTCTCTGGCCA-GCGTA--G-C-GACCGCCCGCCCGCCCATTCATTTCGTC
131 TTGCGCATCTC-GTCTCTCTGG-CAGGCGTAGTGCCTGCCCGCCCG-CCGCCCGCTCATTTCGTC
* * * * * *
19583745 AGTTCGCTTAGGCATACAGG-GTTCATTCCTAGTGTAAGATCAGACCAGATCGAGGGTTGCGGTA
193 GGTTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTA
* ** *
19583809 GCAGGATTGATAACACGCAGAGGGGGA--C--CTGA---------T-CG-AT-----CCC-C-GG
257 GTAGGATTGGCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGG
19583852 --GA-T--------GCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTC
322 CCGACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTC
** *
19583905 TAAG-AT-C--AG---A----C---C---G----GA-C---C-GAGGGTTGCGACAGCACATGCT
386 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGTT
* ** * * *
19583944 GGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCAACATCGTCGGAGCATCGCCGG
451 GGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG-CCGGGCACCATCGTCGGAGCATCACCGG
* ** ** * * *
19584009 GGAACCTGACCGACAGCATTGGGGTTTCGGTGATCGGGGGGGCC-AGGGGGTGTGCACACAAGAT
515 AGAACCTGACCGATGGCATTGGGGTTTCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGAT
19584073 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
579 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* ** * * *
19584138 CACAACCCCTTAAAGATTATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCCGT
644 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
19584203 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
709 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * * *
19584268 TTATGCATGCCAACAAAAATATAACGATCACATCTGA-CAAGTTTGGGGCCAAAACTCCCTCTGA
774 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * * *
19584332 AAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATGGTGAAAAATAGAAAATGAATC
838 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
19584396 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-TAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAA
* *
19584460 ATGGCATTGGCACACAGAAATATGAAGATGTCCCTAAACCCACCTAACACCCTATCGATCCACGG
65 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
19584525 CTTGCGCATCTCGTCTCTCTGGCAGGCGTAGTACCTGCCCGCCCGCCTGCCCGATCATTTCGTCG
130 CTTGCGCATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCGCC-GCCCGCTCATTTCGTCG
* * * * * *
19584590 GTTGGCTTAGGCATACGGAGTTAATTCCCAGTCGAAGATCTGGCCAGACCTAGGGTTGCAGTAGC
194 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGT
* * * ** * * ** * * **
19584655 AGGATCGGTAGCACACAAATGGGGACCCATCCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCC
259 AGGATTGGCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
* * * *
19584720 GACTGA-ACGCCCACACCCTCGTTTTGTGGGTTAACTTAGGCATAC-AGAGTTCATTCCCAGTCT
324 GACTGAGA-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCT
* * ** * *
19584783 AAGTATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGA-TAGAGGGTTACGGTAGCACATGCT
387 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGTAGCACATGTT
* * * ** *
19584847 AGGCTCGGGCATGT-TTCGGTGCCGCATTTTTCTTCATCGGAGCAGCATCGTCGGAGCATCACCG
451 GGGCTCGAGCATGTGCT-GGTGCCGCATTTTTCTTCGCCGG-GCACCATCGTCGGAGCATCACCG
* * * * * * * * * *
19584911 AAGAACCTAACCAACGGCATTAGGGTTTCGTCGATCGAGGGGGCCGGGGAGGGTCTACGGACATC
514 GAGAACCTGACCGATGGCATTGGGGTTTCGACGATCG-GGGGGCCGGGG-GGGTGTGCGCACATG
* ** *
19584976 ATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTGAACCTTGAGAA
577 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
19585041 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTCGCTGCCAATAGCCATTAAAGTGTCT
642 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
19585106 -ATAGTGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATT
707 GA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * *
19585170 TTTTTATGCCTCCCAAAAAAAATACAAGGATCACGTCCA-AAAGGTTTGGGGCCAAAAATCCTTC
771 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTC
* * * * * *
19585234 CAAAAAAATTTAAAAAAATTCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
835 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
19585299 TC
900 TC
*
19585301 GTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** *
19585366 TGGCATTGGCATGCAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGC
66 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
19585431 TTGCGCATCTCGTCTCTCTGGCTGGCATGGTGCCCGCCCGCCCGCCTGCTCGCTCGTTTCGTCGG
131 TTGCGCATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCGCC-GCCCGCTCATTTCGTCGG
* * * * * * *
19585496 TTGGCTTAGACCTACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAAGGTTGC-GATAAT
195 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-TAGT
* * * * *
19585560 AGGATTGACAGCACGTAGA-GGGGACCCGACTGATCCTCGACTTGCGCATCCCACCCCTCTGGCC
259 AGGATTGGCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
* * * * * * *
19585624 GGCTGAGCGCTCGCACGATCGTTTCGTTGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
324 GACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* ** * * * * *
19585689 GCATAGGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCAGCAGCACATATTGGG
389 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGTTGGG
* * ** * *
19585754 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGCTTGGGCACCATCACCGGAGCATCGCTGGAGA
454 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGC-CGGGCACCATCGTCGGAGCATCACCGGAGA
* *** * * *
19585819 ACCTGACCGGTGGCATTGGGGTTTCGACGATCGAGGTTTCCGGGGGGGTGTGCGCACATAATCTA
518 ACCTGACCGATGGCATTGGGGTTTCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * **
19585884 CTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAAATTCGAGAACTCAC
582 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19585949 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
647 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
19586014 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAATTTTTAGCTGAATTTTTATG
712 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19586079 TGCATGCCGAAAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
777 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * * *
19586144 ATTTTAAAAAATCTTGAACTGCGAAAAGTTTTAAAAATCGTGAAAAATAGAAAAGGAGTC
842 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* *
19586204 GTCTTGCCATGAAACTTCACGTGATGG-TTAAGGGACCATTGTATGAATTTACAAGTCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19586268 TGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACC-CCCTTATCGATCCACGG
66 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-TATCGATCCACGG
* * * *
19586332 CTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCTGCCCGCCCGCCCGCTTATTTCATCG
130 CTTGCGCATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCG-CCGCCCGCTCATTTCGTCG
* ** *
19586397 GTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTGACCAGACCGAGGGTTGCGGTAGT
194 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGT
* * * *
19586462 AGGATTGGCAACACGTAAAGAGGGACCTGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
259 AGGATTGGCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
* * *
19586527 GACTGAGAGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTATAA
324 GACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
19586592 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCACATGTTGGG
389 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGTTGGG
* * * *
19586657 CTCGAACATGTACTGGTGCTGCATTTTT-TTCGCCAGGGCACCATCGTCGAAGCATCACCGGAGA
454 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCC-GGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
19586721 ACCTGACCGGTGGCATTGGCG-TTCTGATGATCGGGGGGGCCAGTGGGGGTGTGCGCACATGATG
518 ACCTGACCGATGGCATTGGGGTTTC-GACGATC-GGGGGGCC-GGGGGGGTGTGCGCACATGATG
* * * *
19586785 TGCGATGGGTGCTAGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACTC
580 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
19586850 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAA
645 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** * * *
19586915 ATGGGGATGCTTTTTCCAAATGGTCAGAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
710 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
19586980 TGTGCATGCCAAAAAAAATAGAAGGATCATGTCTACCAAGTTTGGGACTAAAACTCCTTCTGAAA
775 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
19587045 AAGTTTTAAAAAAT-CCGAACCGCAGAAAGTTTTGAAAA-CAGTGAAAAATAGAATACGAGTC
840 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATC-GTGAAAAATAGAAAACGAGTC
* * *
19587106 AT-TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA-AGTATGAA--TACAAG-CATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
19587166 TGGCATTGG
66 TGGCATTGG
19587175 ATGTAAAATT
Statistics
Matches: 7737, Mismatches: 1053, Indels: 430
0.84 0.11 0.05
Matches are distributed among these distances:
839 6 0.00
840 447 0.06
841 2 0.00
842 107 0.01
843 9 0.00
844 93 0.01
846 2 0.00
847 2 0.00
848 3 0.00
851 1 0.00
854 1 0.00
857 2 0.00
858 2 0.00
859 2 0.00
861 1 0.00
864 5 0.00
865 1 0.00
866 3 0.00
867 3 0.00
868 51 0.01
869 1 0.00
876 1 0.00
877 52 0.01
878 2 0.00
879 2 0.00
880 1 0.00
881 5 0.00
884 1 0.00
886 2 0.00
887 2 0.00
888 2 0.00
889 1 0.00
890 366 0.05
891 261 0.03
892 572 0.07
893 21 0.00
894 479 0.06
895 340 0.04
896 384 0.05
897 408 0.05
898 147 0.02
899 251 0.03
900 204 0.03
901 184 0.02
902 476 0.06
903 1138 0.15
904 330 0.04
905 1043 0.13
906 256 0.03
907 62 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCTCGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCGCCGCCCGCTCATTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGTAG
GATTGGCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGA
CTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGTTGGGCT
CGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGCACCATCGTCGGAGCATCACCGGAGAACC
TGACCGATGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
Found at i:19585699 original size:26 final size:26
Alignment explanation
Indices: 19585663--19585715 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19585653 GTTGACTTAG
19585663 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
19585689 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
19585715 G
1 G
19585716 ATTGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:19586602 original size:26 final size:26
Alignment explanation
Indices: 19586566--19586618 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19586556 GTTAACTTAG
19586566 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
19586592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
19586618 G
1 G
19586619 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:19589054 original size:26 final size:26
Alignment explanation
Indices: 19589025--19589076 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19589015 GTTGACATAG
19589025 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19589051 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19589077 AATCAGATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19589193 original size:185 final size:185
Alignment explanation
Indices: 19588872--19589291 Score: 509
Period size: 185 Copynumber: 2.3 Consensus size: 185
19588862 TTAGGGATAT
* ** * * * * *
19588872 GGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGCAGGATCGGCAGCATGT
1 GGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAAGATCGACAGCACGT
* ** * * * * ** * *
19588937 AGAGGGGGACCTGGTTGATCCCCGGCTTGCGCACCCTGCCCCTCTGGCCGGCTGAGCGCTTGTAC
66 AAAGGGGGACCCAGTCGATCCCCGACTTGCGCACCCTACCCCTCTGGCCGACTGAGCGCCGGCAA
* *
19589002 GCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
131 GCTCGTTTCATGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
* * * *
19589057 GGAGTTCATTCCCAGTCTAAAATCAGATCGGACCGAGGGTTGCGGCAGTAAGATTGACAGCACGT
1 GGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAAGATCGACAGCACGT
* * *
19589122 AAAGGGGGACCCAGTCGATCCTCGACTTGCGCATTCC-ACCCCTCTGGCCGATTGAGCGCCGGCA
66 AAAGGGGGACCCAGTCGATCCCCGACTTGCGCA-CCCTACCCCTCTGGCCGACTGAGCGCCGGCA
*
19589186 AGCTCGTTTCATGGGTTGACATAGGCATACAGAGTTCATTCGCAGTCTAAGCATAC
130 AGCTCGTTTCATGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
19589242 GGAGTTCACTCTTAGTATAAGATCGGACCAGACCGAGGGTTGCGCCAGTA
1 GGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTA
19589292 CATGCTAGGC
Statistics
Matches: 196, Mismatches: 38, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
185 194 0.99
186 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (185 bp):
GGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAAGATCGACAGCACGT
AAAGGGGGACCCAGTCGATCCCCGACTTGCGCACCCTACCCCTCTGGCCGACTGAGCGCCGGCAA
GCTCGTTTCATGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
Found at i:19589262 original size:26 final size:26
Alignment explanation
Indices: 19589210--19589262 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
19589200 GTTGACATAG
* *
19589210 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCACTCGCAGTATAA
* **
19589236 GCATACGGAGTTCACTCTTAGTATAA
1 GCATACAGAGTTCACTCGCAGTATAA
19589262 G
1 G
19589263 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCACTCGCAGTATAA
Found at i:19595645 original size:26 final size:26
Alignment explanation
Indices: 19595611--19595663 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19595601 GTTGGCTTTG
*
19595611 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19595637 GCATGCGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19595663 G
1 G
19595664 ATCCGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19596469 original size:26 final size:26
Alignment explanation
Indices: 19596439--19596491 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19596429 GTTGACTTAT
19596439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
19596465 GCATATGGAGTTTATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19596491 G
1 G
19596492 ATCAGTCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19597290 original size:25 final size:26
Alignment explanation
Indices: 19597241--19597291 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
19597231 TGACTTAGGC
*
19597241 ATACAGAGTTCATTCCCAGTGTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
19597267 ATACAGAGTT-ATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
19597292 TCCAATCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:19601663 original size:26 final size:26
Alignment explanation
Indices: 19601627--19601676 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19601617 CACTTAGGCA
19601627 TACGGAGTTCATTCCCAATCTAAGCC
1 TACGGAGTTCATTCCCAATCTAAGCC
* *
19601653 TACGGGGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
19601677 ATCGGACCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCC
Found at i:19602553 original size:26 final size:26
Alignment explanation
Indices: 19602524--19602576 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19602514 GTTGACTTAG
* *
19602524 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19602550 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19602576 G
1 G
19602577 ATCTGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19604510 original size:872 final size:869
Alignment explanation
Indices: 19600718--19606927 Score: 7505
Period size: 900 Copynumber: 7.1 Consensus size: 869
19600708 AGTGCCTGCC
* * * *
19600718 CGCCCGTC-CGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGG
1 CGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
19600782 ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTC
65 ACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * *
19600847 -ACTGGGGCACCATCGCCCGAGCATCGTCGGAGAACCTGATCGGTGGCATTGGGGTTCCAACGAT
130 GTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GCGAT
* * *
19600911 CGGGGGGCTCGGGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGTTTCTTGGCCTTTATA
193 CGGGGGGC-C--G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * * *
19600976 TTGTCCCCCTATACCTCATCAAACCTCGAGAACTCAAACCCGCTTAAAGAGCATGTGAGATTTTA
254 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
19601041 TAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAA
319 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * * *
19601106 ATCTTGTACATTTCGAGTTTTTAGTTGAATTTTTTTGTGAATGCCAAAAAAAAATACAAGAATGA
384 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCA
* *
19601171 CGTCTACCAAGTTTGGGGGCAAAACTCCTTCCAAAAAAATTTTAAAAAATCAC-AAACCGTAAAA
448 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CTGAACCGTAAAA
* *
19601235 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG-AACCTCACGTGAAGGCTTA
512 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
19601299 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTG
577 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTG
* * * * *
19601364 CCTAAACCCACCTACCACTCTATCAATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGACATAGT
642 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * * * * *
19601429 GCCTGCCCG--CTCGCTCGTTTCATCGGTTGGTTTCGGCATACGGAGCTCATTCCTAGTCTAAGA
707 GCCCGCCCGCCCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** * * * * * * * *
19601492 TCGGACCGAATTGATGGTTGTGACAGTAGCATGGGCAGCACGTACAGGGGGACCCGACCAATCCC
772 TCAGACCGGACCGAGGGTTGCGACAGCAGGAT-GGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * *
19601557 CGGCTTACGCATCCCGCCCCTCTTGCCGGCTGAA
836 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
19601591 CGCCCCGCACGCTCATTTTGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAATCTAAGCCTAC
1 CG-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC---G----------------G---A-
* *
19601656 GGGGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGGCAGCACATGCTGGGCTCGGG
42 ---GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
* * *
19601721 CATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACTATCACCGGAGCATCGCCGGAGAACCTGA
104 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
* * *
19601786 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATTG
169 CCGGCGGCATTGGGGTTCCG-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
19601851 GTGCGGGAACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAGACCCCC
232 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * * * *
19601916 TTAAAGAGCATTTGAAATTTTACAAGTTTGCTACCAGTAGCAATTAAAGTGTCCGGAATGAGGAC
297 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
19601981 ACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTTGTACAT
362 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAT
* * * * *
19602046 GCCAATAAAAATACTAGGATCATGTCTACCAAGATTGGGGCCAAAACTCATTCCAAAAAAATTTT
426 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * * *
19602111 AAAAAATCTTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCGAT
491 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
19602176 TAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGC
556 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * **
19602241 ATGCACAAATATGAGGATGTGCC-AAACTCACCTACAACTATATCGATCCACGGCTTGCGCATCC
621 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
19602305 TGTCTCTCTGGCCGGCGTAGAGCCCGCCCGGCCACCTGCTCGTTTCATCGGTTGGCTTAGGCATA
686 CGTCTCTCTGGCCGACGTAGTGCCCGCCC-GCC-CCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * * * * * *
19602370 CGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGATGGTTGTGGCAGCAGGATTGGCAGCACA
749 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGA-TGGCAGCACG
* * *
19602435 CAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAG
813 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
19602492 CGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG---ATC
* * * *
19602557 GAGTTCATTCCCAATCTAAGATCTGATCAGACTGAGGATTACAGCAGCACATGCTAGGCTTGGGC
63 G-G---A----C---C---G----GA-C---C-GAGGGTTACGGCAGCACATGCTGGGCTCGGGC
* * * * * *
19602622 ATGTGCTGGTGCCACATTTTTTTTCGTCGGGGCACCATTGCCAGAGGATCGCCAGAGAACCTGAC
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
* * *
19602687 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGGACATGATGTGCG-TGGG
170 CGGCGGCATTGGGGTTCC-GCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
19602751 TGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
233 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
19602816 TAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGATA
298 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
19602881 CTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
363 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * ** * *
19602946 CAACAAAAATACAAGGATCACGTCTAGCAAGTTTAGGGTGAAAAATCTTTCCAAAAAAATTTTAA
428 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
** ** *
19603011 AAAATCCTGAACCGTAAAAA-TTTTGAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGCCATGA
493 AAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
19603075 AACTTCACGTGAAGGCTTAAGGGACCGTTATATGAATTTACAAGCCATAAAAATGGCATTGGCAC
558 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
19603140 ACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCG
623 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
19603205 TCTCTCTGGCCGACGTAGTGCCCGCCCG--CCTGCTCATTTCATCGGTTGGCTTAGGCATACGGA
688 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * * *
19603268 GTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTG-TAGCAGCACGATTGGCAGCATGCAG
753 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCAGGA-TGGCAGCACGCAG
* ** * **
19603332 AGGGGGACCC-AGTTGATCCCCGGCTTATGCATCCCGCCTCTCTGGCTAGCTGAG
816 AGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * * * *
19603386 TACCCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGATTGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * *
19603451 CCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTT-G
66 CCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * * *
19603515 ATCGGGGGACCATCGTCGGAGCAGCGCCAGAGAACCTGACCTGCGACATTGGGGTTCCGACGATC
131 -TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-CGATC
* **
19603580 AGGGGGGCCGGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TCA
194 -GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
19603644 CACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGGGATTTTACAG
258 C-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
19603709 GTTTGCTGCAAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
322 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
19603774 TTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
387 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
19603839 TACC-AGTTTGGGGCCAAAACACCTTCCAAACAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
452 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
19603903 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
517 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
19603968 CCATTGTATGAATTTACAAGCCAT-AAAATGGCTTTGGCACGTAAAAATATGAAGATGTGCCTAA
582 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAA
* **
19604032 ACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCACCTCTCTGGCCGACGTAGTGCCCG
647 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
19604097 CCCGCACACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
712 CCCGC-C-CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * *
19604162 AACCGGACCGAGGGTTGCGACAGCATGATGAGCAGCACGCAGAGGGGGACCCGATCGATCCCTGG
775 GACCGGACCGAGGGTTGCGACAGCAGGATG-GCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
*
19604227 CTTGCACATCCCGCCCCTCTGGCCGGCTGAG
839 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
19604258 CGCCCTCACGCTCGTTTCGTGGGTTGACTTCGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * *
19604323 CCGGACCGAGGGTTGCGGCAGCACATGCGGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-
66 CCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * *
19604387 ACTGGGGCACCATCGCCGGAGCTTCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCAGCGATC
131 TC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GCGATC
* *
19604452 GCGGGGGCCGGGGGGGTGTGCGCACATGATGTGCCAAGGGTGCTGGTACTTGGCCCTTATATTGG
194 G-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * * *
19604517 CCCCCTACCCCTCATCATACCTCAAGAACTCACTCCCCCTTAAAGAGGATTTGAGATTTTACAGG
258 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
19604582 TTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
323 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
19604647 TGTACACTTCGAGTTTTTAGTTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
388 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
**
19604712 ACCAAGTTTACGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
453 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
* *
19604777 AAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
518 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * * *
19604842 CAGTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAAAAATATAAAGCTATGCCTAAA
583 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAA
* * * * * *
19604907 CCCACCTACCACCCTATCGATACACAGCTTGCGCATCCTGTCTCTCTAGCCGGCGTTGTGCCCGC
648 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-C
* * * ** *
19604972 CTGCCCGCCCGCACGCTCATTTCGTCGGTTGGCTTAAGCATATAGAGTTCATTCCTAGTCTAAGA
710 C-GCCCGCCC-C-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** * * * * *
19605037 TCGGACCAGACCGAGGGTTACGGTAGTAGGATCAGTAGCACACAGAGGGGGACCCGATCGATACC
772 TCAGACCGGACCGAGGGTTGCGACAGCAGGAT-GGCAGCACGCAGAGGGGGACCCGATCGATCCC
* *
19605102 TGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAG
836 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
19605136 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGACTTCATTACCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
* * *
19605201 GAGTTCATTCCCAGTTAAGATCGGACTGAACCGAGGGTTGCGGCAACAGATGCTGGGCTCGGGCA
63 G-G---A----C---------C-G---G-ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * * * ** *
19605266 TGTGCTGGTGCCGCATTTCTCTTCGTCAGGGCACTATCACCGGAGCATCGTTGGAGAACCTGATC
106 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* *
19605331 GACGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGCGCGCACATGATGTGCGATGGGTG
171 GGCGGCATTGGGGTTCC-GCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
19605395 TTGGTTCTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
235 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
19605459 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTATCTGAAATGGGCACACT
300 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
19605524 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCA
365 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
19605589 AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAACAATTTTAAAA
430 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* * *
19605654 AATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGGCTTGCCATGAAA
495 AATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
19605719 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCATGCCATAAAAATGACATTGCCATGC
560 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * *
19605784 AGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTACGCATCCCATC
625 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * * *
19605849 TCTCTAGCCGACGTAGTGCCCGCCCG--CCCGTTCATTTCGTTGGTTCGCTAAGGCATACAGAGT
690 TCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* ** *
19605912 ACATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGC-AGCAACAGGAT--CA--A--C--A--
755 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCAGGATGGCAGCACGCAGAGG
* * * *
19605966 -GCACGC-A--GA-----GG---G-GGATCCCGCCCCTCTGGCCGACTGAG
819 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
19606004 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * *
19606069 TCGGATCGAGAGTTACGGCAGCACATGCTGGCCTCGGGCATGTGCTGGTGCCGCATTGTTT-TTC
66 CCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT-TTTCTTC
* * * * *
19606133 GTCAGGGCACCATTGTCGGAGCATCGCCAGAGAACCTGACCGGCAGCATTGGGGTT-C-CGAT--
130 GTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGCGATCG
* ** *
19606194 ---GGTCGGATGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGC
195 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * * *
19606256 CCCTATCCCTCATCATACCTCAAGAACTCACTCCCCCTTAAAGGGCATTTGAGATTTGACAGGTT
260 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
19606321 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-TTC
325 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-
*
19606385 GTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAA-AAAAAGTACAAGGATCACGTCT
389 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCT
* * * * * *
19606449 ACCAAGTTTAGTGCCAAAACTCCTACCAAGAAAATTTTAAAAAATCTTGAACCGTAGAAAGTTTC
453 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
* *
19606514 AAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
518 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
19606579 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGACATATGAAGATGTGCCTAAA
583 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAA
*
19606644 CCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGC
648 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-T-GC
* * *
19606709 CCGCCCACCCGTCCGTTCGCCCGCTCGTTTCATCGATTGGCTTAAGCATACGGAGTTCATTCCTA
709 CCG----CCCG--C---C-CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
**
19606774 GTCTAAGATCAGACCGGACCGAGGGTT----------G-TGGCAGCACGCAGAGGGGGACCCGGC
764 GTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATGGCAGCACGCAGAGGGGGACCCGAT
* *
19606828 CGATCCCTGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAG
829 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* **
19606869 CGCCCGCAAGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19606928 CATACGGAGT
Statistics
Matches: 4618, Mismatches: 553, Indels: 340
0.84 0.10 0.06
Matches are distributed among these distances:
835 3 0.00
836 57 0.01
837 400 0.09
839 1 0.00
840 5 0.00
841 5 0.00
842 2 0.00
843 97 0.02
844 5 0.00
845 4 0.00
846 1 0.00
847 1 0.00
848 2 0.00
850 1 0.00
853 64 0.01
856 2 0.00
861 3 0.00
864 2 0.00
865 77 0.02
866 1 0.00
867 4 0.00
868 359 0.08
869 297 0.06
871 4 0.00
872 540 0.12
873 151 0.03
874 130 0.03
876 2 0.00
877 10 0.00
878 191 0.04
879 3 0.00
880 6 0.00
881 3 0.00
882 1 0.00
883 2 0.00
885 3 0.00
887 2 0.00
888 1 0.00
889 2 0.00
890 1 0.00
891 4 0.00
892 68 0.01
893 2 0.00
894 181 0.04
895 1 0.00
896 7 0.00
897 475 0.10
898 249 0.05
899 167 0.04
900 714 0.15
901 187 0.04
902 9 0.00
903 108 0.02
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGCGATCGG
GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAA
AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
CCCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
ACCGAGGGTTGCGACAGCAGGATGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAG
Found at i:19605207 original size:26 final size:25
Alignment explanation
Indices: 19605168--19605219 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
19605158 GTTGACTTAG
19605168 GCATACAGACTTCATTACCAGTCTAA
1 GCATACAGACTTCATTACCAGT-TAA
* * *
19605194 GCATACGGAGTTCATTCCCAGTTAA
1 GCATACAGACTTCATTACCAGTTAA
19605219 G
1 G
19605220 ATCGGACTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACAGACTTCATTACCAGTTAA
Found at i:19606937 original size:26 final size:26
Alignment explanation
Indices: 19606901--19606953 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19606891 GTTGACTTAG
* **
19606901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCAAAGTCTAA
19606927 GCATACGGAGTACATTCAAAGTCTAA
1 GCATACGGAGTACATTCAAAGTCTAA
19606953 G
1 G
19606954 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCAAAGTCTAA
Found at i:19609111 original size:26 final size:26
Alignment explanation
Indices: 19609082--19609134 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19609072 CTCGGCTTAG
*
19609082 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19609108 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19609134 G
1 G
19609135 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19609765 original size:26 final size:26
Alignment explanation
Indices: 19609729--19609781 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19609719 GTTGACTTAG
*
19609729 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
*
19609755 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
19609781 G
1 G
19609782 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCAAGTCTAA
Found at i:19610665 original size:26 final size:26
Alignment explanation
Indices: 19610628--19610680 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19610618 GTTGAATTAG
*
19610628 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19610654 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
19610680 G
1 G
19610681 ATCCAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19611561 original size:26 final size:26
Alignment explanation
Indices: 19611525--19611577 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19611515 GTTGACTTAG
*
19611525 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19611551 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19611577 G
1 G
19611578 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19612454 original size:26 final size:26
Alignment explanation
Indices: 19612425--19612477 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19612415 ATTGACTTAG
19612425 GCATATGGAGTTCATTCCCTA-TCTAA
1 GCATATGGAGTTCATTCCC-AGTCTAA
19612451 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
19612477 G
1 G
19612478 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:19613196 original size:901 final size:900
Alignment explanation
Indices: 19609611--19613897 Score: 5448
Period size: 900 Copynumber: 4.8 Consensus size: 900
19609601 CATACAGAGT
* * * * * * * * *
19609611 GAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGGGAGACCTGGTCGATCCTCGGCTTACGCAT
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * * * *
19609676 CTCACCCCTCTGGTAGACTGAGCG-TCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
66 CCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
19609740 TAATTCCTAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCG
131 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACG
* * * ** *
19609805 GCAGCACATGTTGGGCTCAGGCATGTGCTGGTGGTGCATTTTTCTTCGTCGGGGCACCA---T--
196 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCG
* *
19609865 --GC-T----GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
261 GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTG
* *
19609923 TGCGCACATGATGTGCGATGGGAGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
326 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
19609988 ACCTTGAGAACTAACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
391 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
19610052 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTCT
456 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT
* * * * * * * *
19610116 AGCTGAATTTTTTTGTGCATGCCAATAAAAATACTAGGATCATGTCTACCAATTTTTGAGCGAGA
521 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* ** * * **
19610181 ACTCGTTCCAAAAAAATTTTAAAAAATCCCAAACCATAAAATGTTTCCAAAATTGTGAAAAATAA
586 ACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAA
19610246 AAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCA
651 AAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-CA
* * * * *
19610311 AGCCATAAAAATGGAATTGCCATGCACAAATATGAAGATGTGCCTGAACCCACCTACCACCCTAT
715 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
19610376 CGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGTCCGCCCACC
780 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCG------
* * * *
19610441 CGCCGATTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAG
835 C-CC-ATTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCAG
19610506 ACC
898 ACC
* * * *
19610509 GAGGGTTGCGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGTCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * * * * *
19610574 CTCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACAGAGT
66 CCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* ** * *
19610639 TCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCCAACCAGACCCAGGGTTGCG
131 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACG
* * * * *
19610704 ATAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGTATTTTTATTCACCGGGGCACCATCGTCG
196 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCG
* * * **
19610769 GAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-AGGGGG-CCAGGGGGTG
261 GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTG
* *
19610832 TGCGCACATGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
326 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * * *
19610897 ACCTCAAGAACTCACACCCCCTTAAAGAGCGTTTGAGGTTTTACAAGTTTGCGGCCAGTAGCCAT
391 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
19610962 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGTTTTT
456 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT
19611027 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
521 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
19611092 ACGT--TTCCTGAAAAAA-TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
586 AC-TCCTTCC-AAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * *
19611154 AGAAAACGGGTTGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
649 AAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * *
19611219 AAGCCATAAAAATGGCATTGGCACGCAAAAATATGGAGATGTACCTAAACTCACCTACCACACTA
714 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * ** *
19611284 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATACTGCCCGCCCGCCTGCCCGCTCGT
779 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCATTCAT
* * * **
19611349 TTCGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACC-GAATT
844 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGA-ACCAG-ACC
* ** * *
19611406 GAGGGTTACGGCAGCAATATTGGCAGCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * * *
19611471 CCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGT
66 CCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* * ***
19611536 TCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGG-TAGC
131 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTA-C
* * * *
19611600 AACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTC
195 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC
* *
19611665 GGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGAGGAGGTCCGGGGGGG
260 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGT-C-GGGGGG
* * *
19611730 GTTTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCAT
323 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
19611795 CAAACCTCGAGAACT--CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
388 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
19611858 CATTAAAGTGTCTGGAATGGGTACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTT
453 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
* * *
19611923 TTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGCGG-C
518 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
19611987 ATAAACTCCTTCCAAAAAAATTTTAACAAATCTCGAACTGCAAAAAGTTTCGAAAATCATGAAAA
583 A-AAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * * *
19612052 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCGTTGTATGAATTT
647 ATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** *
19612117 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTATCACCC
712 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * **
19612182 TATCGATCCACGACTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGGTC
777 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCATTC
* * * *
19612247 ATTTCATCTGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGAACCAGACC
842 ATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCAGACC
* * * * * * * * * * *
19612306 AAGGGTTGCAGTAGCAGGATCGACAACACACAGAAGAGGACCCGACCGATCGCCGGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * ** *
19612371 CCTGCCCCTCTGGTCGGCTGAGCGCCTGCACGCTCATTTCGTGCATTGACTTAGGCATATGGAGT
66 CCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* * **
19612436 TCATTCCCTA-TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTAC
131 TCATT-CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAC
* *
19612500 GACAGCACATGCTGTGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC
195 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC
** * * * * *
19612565 GGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTTCGGCGATCGTGGGGGTCGGTGGGGG
260 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTCGG-GGGGG
* *
19612630 TGTGCGCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATC
324 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * *
19612695 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTCTACAGGTTTCCTTCCCGTAGCC
389 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
19612760 ATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGCCACAAAATCTTGTACACCTCGAGTTT
454 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* * * * *
19612825 TTAGCTGAATTTTTTTATGCATGCCAATAAAAATACAGGGATCACGTCTTCCAAATTTGGGGCCA
519 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
19612890 AAACTCCTTCCAAAAAAATTTAAAAAAATCCCAATCCGCAAAAAGTTTTTAAAAATCGTAAAAAA
584 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG-TTTCAAAAATCATGAAAAA
* *
19612955 TAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
648 TAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * * *
19613020 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGCGCCTAAACTCACCTATCGCCCA
713 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
** *
19613085 ATCGATCCATTGCTTGCGCATCCCGTCTC-CTGACCGGCGTAGTGCCCGCCCGCCCGCCCATTCA
778 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCATTCA
* * *
19613149 TTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACC
843 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCAGACC
** * *
19613207 GAGGGTTGCGGCAGCAGGATTGGCAGCACGTGGAGGGGGACCCGGTCGATCCCCGGCTTGCGCGT
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
** * * *
19613272 CCCAACCCTTTGGTCGACTGAGCGCCAGCACGCTCATTT--T--G-TG-----GG--T-C-GA--
66 CCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
** *
19613321 -C--T--TAG-----GCATACGGAGTTCATTCATAGTCTAAGATCGGACCAAACCGAGGGTTACG
131 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACG
* * * * *
19613376 GCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT-GACCGGGGCACGATCGCC
196 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CCGGGGCACCATCGTC
* * * *
19613440 GGAGCAACACCGGAGAACCTAACTGACAGCATTGGGGTT-C--CGAT-GA-----TC-GGGGGGT
260 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGT
* *
19613495 ATGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
325 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
** *
19613560 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATCGGTAGCCA
390 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
19613625 TTAAAGTGTCTGAAATGGGGATACTTTTATCAAATTGTCCCAAAATCTTGTACACTTTGAGTTTT
455 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
* * * *
19613690 TAGTTGAATTTTTTTGTGCATTCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
520 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** * ** * *
19613755 AACTCC-TCTGAAAAAATTTTAAAAAATCCCGAACTACGAAGAGTTTCAAAAATCATGAAAAATA
585 AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * *
19613819 AAAAACGAGTTGTCTTGCCATGAAACTTAACGTGATGGCTTAAGGGACCATTGTATGAATTTATA
650 AAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
19613884 AGCCATAAAAATGG
715 AGCCATAAAAATGG
19613898 TGTGCATATA
Statistics
Matches: 2973, Mismatches: 377, Indels: 114
0.86 0.11 0.03
Matches are distributed among these distances:
862 92 0.03
863 28 0.01
864 246 0.08
865 1 0.00
866 2 0.00
871 1 0.00
872 4 0.00
874 2 0.00
875 131 0.04
879 2 0.00
882 1 0.00
884 1 0.00
887 2 0.00
889 1 0.00
891 2 0.00
896 4 0.00
897 319 0.11
898 87 0.03
899 400 0.13
900 527 0.18
901 447 0.15
902 162 0.05
905 2 0.00
906 2 0.00
907 2 0.00
909 187 0.06
910 213 0.07
911 104 0.03
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
CCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACG
ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCG
GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAA
AAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCATTCATTT
CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCAGACC
Found at i:19614617 original size:26 final size:26
Alignment explanation
Indices: 19614588--19614666 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
19614578 GTTGACTTAG
*
19614588 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19614614 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
19614640 GCATGTGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19614666 G
1 G
19614667 ATCAGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19615550 original size:26 final size:26
Alignment explanation
Indices: 19615514--19615566 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19615504 GTTGACTTAG
*
19615514 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19615540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19615566 G
1 G
19615567 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19617281 original size:26 final size:26
Alignment explanation
Indices: 19617252--19617304 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19617242 GTTGACTTAG
19617252 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
19617278 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19617304 G
1 G
19617305 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19618185 original size:26 final size:26
Alignment explanation
Indices: 19618155--19618207 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19618145 GTTGACTTAG
19618155 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19618181 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19618207 G
1 G
19618208 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19619085 original size:26 final size:26
Alignment explanation
Indices: 19619055--19619107 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19619045 GTTGACTTAG
19619055 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19619081 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19619107 G
1 G
19619108 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19619976 original size:26 final size:26
Alignment explanation
Indices: 19619946--19619998 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19619936 GTTGACTTAG
19619946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19619972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19619998 G
1 G
19619999 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19620866 original size:26 final size:26
Alignment explanation
Indices: 19620828--19620883 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19620818 TTGGTTGACT
19620828 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
19620854 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19620880 TAAG
1 TAAG
19620884 ATCGGATTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19620971 original size:885 final size:885
Alignment explanation
Indices: 19613907--19624379 Score: 11807
Period size: 885 Copynumber: 11.8 Consensus size: 885
19613897 GTGTGCATAT
*
19613907 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
19613972 GAACT--CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTA
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * * *
19614035 TCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTTCGGC-TCCAGTTTTTAACTGA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAGTTTTTAGCTGA
* * * * * *
19614099 CTGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAACCACCT
195 ATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* ** * *
19614164 TCCGAAGAAATTTTAAAAAATCTTGAACCGT-AAAAAGTTTTGAAAATTGTGAAAAATA-AGAAA
260 TCCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTTAAAAATCGTGAAAAATAGA-AAA
19614227 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
323 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
19614292 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATC
388 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * ** * *
19614357 CACGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCTACCAGCTCGTTTCGTCGGTT
453 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGGTCGTTTCGTCGGTT
* ** * *
19614422 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CGAACTGGACTGAGGGTTGTGGCGGCAG
518 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATATG-ACCAGACCGAGGGTTGTGGCAGCAG
* * ** * * * *
19614486 GAT-TAGTAGCACATAGAGTGGGACCC-AGTCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCC
582 GATCGA-CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
19614549 GACAGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGATCATTCCCAGTCTAA
645 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
19614614 GCATACGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
710 GCATACGGAGTTCATTCCCAGTCTAAG-A--TCG-G---------A--CT--G----GA-C----
* *
19614679 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTAGGG
749 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC------G
* * * * *
19614744 CATCGTCGTCGGAGCTTCGTCGGAGAACCTGACCGGTGGCATTGGGGATCCGACGATCGGGGGGG
808 C-TCG-CG--GCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
*
19614809 CCGGGGGGTGTGCACAC
869 CCGGGGGGTGTGCGCAC
*
19614826 ATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTTC-
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCG
* *
19614890 AGAACTGACA-CCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
65 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
19614954 GTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
130 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * ** *
19615019 ATTTTTTTGTGCATGCCAA-AAAATATGA-AAGGATCATGTGTACCAAGTTCAGGGCCAAAAATC
195 ATTTTTTTTTGCATGCCAACAAAA-AT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * *
19615082 CTTCCGAAAAAA-TTTAAAAAAT-CCTAAACTGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAA
258 CTTCCGAAAAAATTTTAAAAAATCCCGAACCT-CAAAAAGTTTTAAAAATCGTGAAAAATAGAAA
* *
19615145 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCC
322 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
19615210 ATAAAAATGGCATTGGCATGGAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCAAT
387 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
19615275 CCATGG-TTACGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCTGCCCGCTCATT
452 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-G---G-TCGTT
* * **
19615339 TCATCGGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACCAGACTAAGGGTTG
509 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAT-GACCAGACCGAGGGTTG
** * * * ** * ** * *
19615403 CAGTAACAGGATTGACAGCACATAGAGGGGGACTCGGTCGATCCTCGGCTTGCGCATCCCGCGCC
573 TGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
** * * ** ** * *
19615468 TCTGGTTGACTGAGCGCCAGCACGCTTATTTTGTGAGTTGACTTAGGCATAGGGAGTTCATTCCC
638 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
*** *
19615533 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAGCACA
703 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACA
* * *
19615598 TGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGGCATGATCGTCGGAGCATC
768 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTC---GC--G---G-C--ACCATC
* * * * *
19615662 ATCGGAGAACCTGACTGACGGCATTGGGGTTTCGACGAT---------C-GGGGATGTGCGCAC
822 GTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
* * **
19615716 ATGATGTGCGATGGGTGCTGGTACTTGCCCCTTATATTGACTTCCTATCCCTCATCAAACCTCGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
19615781 GAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
19615846 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
19615911 TTTTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTT
196 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
19615975 CCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGA
261 CCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* *
19616040 GTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAA
326 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * *
19616105 AAATGGCATTGGCACACAAAAATGTGAGGATGTGCCTAAACCCACCCACCACCCTATCGATCCAC
391 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
19616170 GGCTTG-GCATCCTGTCTTTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCCCACCCGCCCGCT
456 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C--CCG----CCCG---G-T
** * *
19616234 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGG
505 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGACCAGACCGAGGG
* * * *
19616299 TTGCGGCATGCAGGATCGACAGCACGTAGAGTGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
570 TTGTGGCA-GCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * * *
19616364 CCCCTCTCGCCGGTTAAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
634 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
*
19616429 TCCCAGTCTAAG-AT-C-G-G---------A--C------C-GA----ACCGAGGGTTGCGGTAG
699 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAG
* * *
19616468 CACATGCTGGGCT----C-T-TCGCTGG-G--GCA----CCATCG-T--CGG-AGCATCGTCGGA
764 CACATGCTGGGCTCGGGCATGT-GCTGGTGCCGCATTTTTCTTCGCTCGCGGCACCATCGTCGGA
* * * *
19616516 GAACCTAACCGGCGGCATTGGGGTTCCGACGATC-GGGGTGCCGGGAGGTATGCGCAC
828 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
* *
19616573 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTTGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
19616638 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
19616703 CCT-AACATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGA
131 TCTGAA-ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * **
19616767 ATTTTTTTTTGCATGCAAACAAAAATACAAGGATCACGTCTGCCATGTTTGGGGTGAAAACTCCT
195 ATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * *
19616832 TCCGAAGAAATTTTAAAAAATCTCGAACCGT-AAAAAGTTTTAAAAATCATGAAAAATAGAAAAC
260 TCCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAC
19616896 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
324 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
19616961 AAGAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCC
389 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * *
19617026 ACGGCTTGCGCATCCCGTCTCTTTGGCTGGCATAGTGCCTGCCCG--C--TCGGTTCATCAGTTG
454 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGGTCGTTTCGTCGGTTG
* * * * * * ***
19617087 GCTTAAGCATACAGAATTCATTCCCAGTCTAAGAT-TGGATCAGACCCAGTGTTACAGCAGCAGG
519 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAT-GACCAGACCGAGGGTTGTGGCAGCAGG
* * * * **
19617151 ATCGATAGCTCGTAGAGGGGGACCCAACCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGC
583 ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
19617216 TGAGCTCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCA
648 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* ** * * *
19617281 TACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCACATGCTGCGCTC
713 TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * * *
19617346 GGGCTTGTGCTGGTGCCGAATTTTTCTTCAC-CGAGGCACCATCGTCGGAGATCCTGACTGGCAG
778 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGCGGCACCATCGTCGGAGAACCTGACCGGCGG
* * ** *
19617410 CATTAGGGATCCGGTGATTGGGGGGGCCGGGGGGGGCGTGTGCGCAC
843 CATTGGGGTTCCGACGATCGGGGGGGCC---GGGGG-GTGTGCGCAC
* * * * *
19617457 ATGTTGTGTGATGGGTTCTGGCACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
19617522 GAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
19617587 TCTAAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
19617652 --TTATTTTGCTTATGCCAACAAAAATACAAGGATCATGTCTACCGAGTTTGGGGCCAAAACTCC
196 TTTTTTTTTGC--ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
*
19617715 TTCCG-AAAAA-TTTAAAAAACTCCCGAACCGT-AAAAAGTTTTAAAAATCATGAAAAATAGAAA
259 TTCCGAAAAAATTTTAAAAAA-TCCCGAACC-TCAAAAAGTTTTAAAAATCGTGAAAAATAGAAA
* ** *
19617777 ACGAGTCGTCTTACCATGAAACTTCACGTGTCGGCTTAAGGGACCATTGTATGAATTTAAAAGCC
322 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
19617842 ATAAAAATGGCATCGGCATGCAGAAATATGAAGATGTACCTAAACCCGCCTACCACCCTATCGAT
387 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
19617907 CCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCCACCCGCCTGCCCGCCCCCCCGCC
452 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG---T----A---G--TGCCCG----CCCGCC
* * * * * **
19617972 CGCTCGTTTTGTCGGTTGGCTTAGGGATACGGAGTTCATTCCAAGTATAAGAT-TGGACCAGATT
501 CGGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAT-GACCAGACC
* * * * *
19618036 GAGGGTTGTGGCGGCAGGATCGGCAGCACACGGAGGGGGACCCGACCAATCCCCGGCTTGCGCAT
565 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* *
19618101 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
630 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * *
19618166 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTACG
695 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
* * * * *
19618231 ACAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCGTATTTTTCTTCG-TCGGGGCACCATCACC
760 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGCGGCACCAT---C
* * * * * *
19618295 GGAGCATCCCCTGAAAACTTGACCAGCGGCATTGGGGTTCCGATGATC-GGGCGGCCGAGGGGGC
822 ---G--T---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGG-
*
19618359 TCTGCGCAC
877 TGTGCGCAC
* *
19618368 ATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGT
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
19618433 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
19618498 TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTGACTTTTTAGCTGAA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * *
19618563 TGTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTTGGGCCAAAACTCCTT
196 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* ** * * * * *
19618628 CCGAAGAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAAGATAGAAAATGA
261 CCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
*
19618693 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
326 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
19618758 AAATGGCCTTGGCATGCAGAAATATGAAGATGTACCTAAACCCGCCTACCACCCTATCGATCCAC
391 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ** * * * *
19618823 GGCTTGCGCATCCCTTCTCTCTGGCCGATGTACTGCCCGCCCGCCTGCCCGCTTGTTTTGTCGGT
456 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGGTCGTTTCGTCGGT
* * * * **
19618888 TGGCTTAGGGATACAGAGTTCATTCCAAGTCTAAGAT-TGGACCGGATTGAGGGTTGTGGC-GAC
517 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAT-GACCAGACCGAGGGTTGTGGCAG-C
* * * * *
19618951 AGGATCGACAGCACGCGGAGGGGGACTCGGCCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCC
580 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
19619016 GGCTGAGCGCCCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
645 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
19619081 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGATTGCGGCAGCACATGCTGGG
710 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
19619146 CTCGAGCATGTGCTGGTGCCATATTTTTCTTC-CCCGGGGCACCATCGTCAGAGAACCTGACCGG
775 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGCGGCACCATCGTCGGAGAACCTGACCGG
*
19619210 CGGCATTGCGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
840 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
* *
19619256 ATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
19619321 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
**
19619386 TCTGAAATGGGGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * **
19619451 TTTTTTTTT-CATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAGCTT
196 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
19619515 -CGAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATAAAAAATAGAAAAAG
261 CCG-AAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACG
*
19619579 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATA
325 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
19619644 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCA
390 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
19619709 TGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCTCTCCCGCCCGCCCGCCCGCTCGTTTCG
455 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCG---G-TCGTTTCG
* * *
19619774 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGACCGGATCAAGGGTTGTGGC
512 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGACCAGACCGAGGGTTGTGGC
* * *
19619839 AGCAGGAAT-GACAGCATGTAGAGGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCT
577 AGCAGG-ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* *
19619903 GGCCTGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
641 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
19619968 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGATCGATGGTTGCGGCAGCCCTTG
706 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATG
* * *
19620032 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-TCGGGGCACTATCGTCGGAGAACCTG
770 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGCGGCACCATCGTCGGAGAACCTG
* * * *
19620096 ACGGGCGGCATCGGGGTTTCGACGATCGGGGGGGCCCGGGGGATGTGCGCAC
835 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCAC
* * *
19620148 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATTAAACCTCGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * *
19620213 GAACTCACACCCCCTTTAAGAGAATTTAAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
19620278 TCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
19620343 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
196 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
19620408 CCAAAAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAA
261 CCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* *
19620473 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAG
326 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * *
19620538 AAATGGCATTGGCACATAGAAATATGAAAATGTGCCTAAACCCACCTACCACTCTATCGATCCAC
391 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * ** * *
19620603 GGCTTGCACAACCCGTCTTTCTGGCTGGCGTAGTACCCACCCGTTCGGTCATTTCGTCAGTTGGC
456 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGC
* * * * *
19620668 TTAGGCGTACGGAGTTCATTCCCAATCTAAGATATGATCGGATCGAGGGTTGTGGCAGCAGGATC
521 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGACCAGACCGAGGGTTGTGGCAGCAGGATC
* * * * ** * * *
19620733 GGCAGCACACAAAGGGGGACCCGACCGATCCACGGCTTGCGCATCTTGCCCCTCTGGTCAGTTGA
586 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
19620798 GCGCCCGCACGCTCGTTTCCTTGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATAT
651 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
19620863 GGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGGTAGCACATGCTGGGCTTGGG
716 GGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * *
19620928 CATGTGCTGGTGCCACATTTTTCTTCGCTAG-GGCACCATCGTCGGAGAACCTGACGGGCGACAT
781 CATGTGCTGGTGCCGCATTTTTCTTCGCTCGCGGCACCATCGTCGGAGAACCTGACCGGCGGCAT
* *
19620992 TGGGCTTCCGACGATCGGGGGGGCCGACGGGGTGTGCGCAC
846 TGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCAC
* * * *
19621033 ATGATGTGCGATGGGTGCGGGTACTTAGCCCTTATATTGGCCCTCTATCACTCATCAAACCTCGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
19621098 GAACTCACATCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
19621163 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGATGAA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * **
19621228 TTTTTTTTTACATGCCAAAAAAAATACCAGGATCACGTCTTCCAAGTTTGCTGCCAAAACTCCTT
196 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* ** * *
19621293 CCGAAAAAATTTTCAAAAATCTGGAA-CTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATG
261 CCGAAAAAATTTTAAAAAATCCCGAACCT-CAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACG
19621357 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
325 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* ** * *
19621422 AAAAAGGCATTGGCACATAGAAATATAAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCA
390 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
19621487 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCTGCCCGCCCGCTCGTTTCGTTGG
455 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGGTCGTTTCGTCGG
* * *
19621552 TTGGCTTAGGCAAACAGAGTTCATTCCCAGTCAAAGATCA-GACCAGACCGAGGGTTGTGGCAGC
516 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-ATGACCAGACCGAGGGTTGTGGCAGC
* * ** * * *
19621616 AAGATCGACAGCACGCAGAGGGGGACCCGGCTAATCCCCGGGTTACGCATCCCGCCCCTCTAGCC
580 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * **
19621681 GACTGAGCACCCGTACGCTCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAATCCCA
645 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
19621746 GCATACACAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGATTACGGCAGCACAAGCTGGG
710 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
19621811 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACTATCGTCGG-AGCATCGTCGGAG
775 CTCGGGCATGTGCTGGTGCCGCATTTTTC--T-TC---G--C--TCG-CGGCACCATCGTCGGAG
* * * * * * * *
19621875 AATCTGACCGACGGCATCGGGGTTCC-AGTGATC-GGAGGGCTGGAGGGGTCTGTGCAC
829 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGG-GGGGTGTGCGCAC
* * * * *
19621932 ATGATGTGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCAGCAAACCTCCA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
19621997 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCAATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
19622062 TCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * * * ** *
19622127 -TTTTATGTGCATGCCAAAAAAAATACAAGGATCACATTTAACAAGTTTGGGGTGAAAA-TGTCT
196 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCT
* * *
19622190 TCCGAAAAAATTTTAAAAAGTCCCAAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
260 TCCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAC
* *
19622254 GAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCAT
324 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
19622319 AAAAATGGCATTAGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCC
389 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * * *
19622384 ATGGCTTGTGCATCCCGTCTCTCTGGCCAGCGTCGTGCCCGCCTGCTCGCTCGTTTTGTCGGTTG
454 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGGTCGTTTCGTCGGTTG
* * * ** * * *
19622449 GCTTAGGCATACAGAGTTAATTGCCAGTCTAAGA-ATGGACTGGACTGAGGGTTGCGGGTAGCAG
519 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAT-GACCAGACCGAGGGTTG-TGGCAGCAG
* * * *
19622513 GATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTCGCTGG
582 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* **
19622578 CTGGGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T----
647 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
19622638 -TA---AG---A-T---AG-----GA-CGGA-T----CGAGGGTTGCAGCAACACATGCTGGGCT
712 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
19622681 CGGGCATGTGCTGGTGTCGCATTTTTTTTCG-TCGAGGCACCATTGTCGGAGAACCTGATCGGTG
777 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGCGGCACCATCGTCGGAGAACCTGACCGGCG
* * *
19622745 GCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGTGCAC
842 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
* * *
19622789 ATGATGT-CTGATGGGTGCTGGTACTTGGCCCTTACAGTGGCCCCCTATCCCTCATCAAACCTTG
1 ATGATGTGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
19622853 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGT
65 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
19622918 GTTTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACA---C---TTTTTAGCTGA
130 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
19622977 ATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTATT-GGGCCAAAACCCC
195 ATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCCAAAACTCC
* * * *
19623041 TTCCGAAAAATTTTTAAAAAGTCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
259 TTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAC
*
19623106 GAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
324 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
19623171 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACTCTATCGATCC
389 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
** **
19623236 ACGGCTTATGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCACCTGCCCACTCGTTTC
454 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCG--C-CC-GCCCGGTCGTTTC
* * * ** * * * *
19623301 GTCGGCTGGCTTAGGCATACGGACTTCATTCCCATTCTAAGATCGGACCAAACCTAGGGTTGCGA
511 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGACCAGACCGAGGGTTGTGG
* ** * * ** * ** *
19623366 CAGCAGGATTGGTAGCACGCAGA-GGGGACCCGGCAGATCCCCGGCTTATGTATCCCTTCCCTTT
576 CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
19623430 GACCAGCTGAGCGCCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATA-TGAGTT--TCCCCAAT
641 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *** * * ** *
19623492 CTAAGGTC-TGATCGGACCTTTACGGGCCAG-CTTCA-AT--G-CT-GA-CTAGCATGTGC-TCG
706 CTAA-G-CAT-A-CGGA-GTTCA-TTCCCAGTC-TAAGATCGGACTGGACCGAGGGT-TGCGGC-
* ** **** ** * * *** *
19623548 TGCACATTTTATATTC-ACCGA-G-GC---T--C-CA-TCTGCGGAGCATCGCCGG-A-GATCGT
762 AGCACATGCTGGGCTCGGGC-ATGTGCTGGTGCCGCATTTTTCTTCGC-TCG-CGGCACCATCGT
* ** * * * *
19623601 CGGAGAACCTAACCGATGGCA-TGGAGTTCCTG-CG--CGTGGGGACCGGGGGGTGTGTGCAC
824 CGGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGTGTGCGCAC
* *
19623660 ATGATGTCTGCAAT--GTGCT-GTACTATGGCCC-TATAAT-----CC-ATCCCTCA--AAA--T
1 ATGATG--TGCGATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
19623711 -GAGAACTCACAGCCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGGTGCTAGTAGCTATTAA
63 CGAGAACTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
19623775 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
127 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * **
19623840 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGGTCACGTCTAACAAGTTTGGTTCCAAAACT
192 TGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
19623905 CCTTTCAAAAAAATTTTAAAAAATCCCAAACATCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
257 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTTAAAAATCGTGAAAAATAGAAA
* * * *
19623970 ACGAGTCATCTTGCCATGTAACTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCC
322 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * **
19624035 ATAAAAATAGCATTGGCATGCAGAAATATGAAGATACGCCTAAACCCACCTACCACCCTATCGAT
387 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
19624100 CCATGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGACCGCCCGCTCGTTTCAT
452 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGGTCGTTTCGT
* * ** * *
19624165 CGCTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTACGATCGGACCACACCGAGGGTTGCGGCA
513 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGACCAGACCGAGGGTTGTGGCA
* ** * * *
19624230 GCAGGATCGGCAGCACATAGAGGGGGACCCGACTGATCCCCAGCTTGCACATCCCGCCCCTCTGG
578 GCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
19624295 CCGGCTGAGTGCCCGCAGGCACGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
643 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
19624360 AAGCATACGGAGTTCATTCC
708 AAGCATACGGAGTTCATTCC
19624380 GGCAATCGGG
Statistics
Matches: 8276, Mismatches: 1000, Indels: 614
0.84 0.10 0.06
Matches are distributed among these distances:
838 121 0.01
839 62 0.01
840 1 0.00
841 1 0.00
842 1 0.00
845 1 0.00
848 40 0.00
851 16 0.00
852 266 0.03
853 4 0.00
854 1 0.00
855 11 0.00
856 10 0.00
857 461 0.06
858 271 0.03
859 69 0.01
860 142 0.02
861 1 0.00
862 107 0.01
863 82 0.01
864 41 0.00
865 8 0.00
866 285 0.03
867 1 0.00
868 51 0.01
869 12 0.00
870 12 0.00
871 40 0.00
872 3 0.00
873 19 0.00
874 55 0.01
875 5 0.00
876 7 0.00
877 1 0.00
878 4 0.00
879 41 0.00
880 10 0.00
881 7 0.00
882 30 0.00
883 200 0.02
884 244 0.03
885 777 0.09
886 9 0.00
887 262 0.03
888 204 0.02
889 310 0.04
890 102 0.01
891 672 0.08
892 230 0.03
893 260 0.03
894 69 0.01
895 127 0.02
896 3 0.00
897 8 0.00
898 258 0.03
899 280 0.03
900 545 0.07
901 5 0.00
903 264 0.03
904 1 0.00
905 2 0.00
906 1 0.00
909 2 0.00
910 2 0.00
911 246 0.03
912 193 0.02
913 24 0.00
914 27 0.00
917 1 0.00
918 37 0.00
919 235 0.03
920 168 0.02
921 4 0.00
922 2 0.00
923 2 0.00
925 1 0.00
926 197 0.02
927 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (885 bp):
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
CCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGACCAGACCGAGGGTTGTGGCAGCAGGATC
GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGCTCGCGGCACCATCGTCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
Found at i:19626040 original size:26 final size:26
Alignment explanation
Indices: 19626011--19626063 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19626001 GTTGACTTAG
19626011 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19626037 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19626063 G
1 G
19626064 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19626953 original size:26 final size:26
Alignment explanation
Indices: 19626903--19626955 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19626893 GTTGACTTAG
*
19626903 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCAATCCCAATCTAA
* * *
19626929 GCATATGGAGTTGAATCTCAGTCTAA
1 GCATATGGAGTTCAATCCCAATCTAA
19626955 G
1 G
19626956 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCAATCCCAATCTAA
Found at i:19627404 original size:900 final size:893
Alignment explanation
Indices: 19624390--19627712 Score: 4651
Period size: 893 Copynumber: 3.7 Consensus size: 893
19624380 GGCAATCGGG
* * *
19624390 GGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTTCTTGGCCCTTATATTGGCCCC
1 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
19624455 CTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
66 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
19624520 CTGCCAGTAGCAATTAAACTGTCTAAAATGGGGACACTTTTTTCAAATGTCACAAAATCTTGTAC
131 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGTCACAAAATCTTGTAC
* * * * * * *
19624585 GCTTTGAG-TTTTAGCTGAATTTTTTTGTACATGCCAACAAGAATACAGGGATAACGTCCACCAA
196 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
19624649 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CGAACCGTAAGAAGTTTCAAAAA
261 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
* *
19624713 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTG
326 TCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
19624778 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCAC
391 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
19624843 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGA-GTAGTTCCCGCCTGC
456 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAG----CG-C--C
* * * * **
19624907 TCGCCTGCCCGCCCGTCCGCTCGTTTCGTC-GCTTGGCCTAGGCATACGGAGTTCATTCTTAGTC
513 -CGCCCGCCCGCCCGCCCGCTCGTTTCGTCTG-TTGGCTTAGGCATACAGAGTTCATTCCCAGTC
* *
19624971 TAAGATCAGACCGAACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGAGGGGGACCCAGCCT
576 TAAGATCAGACC-AACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCG
* * * *
19625036 ATCCCCGGCTTG-AGCATCCCGCCCCTCTGGCCAGTTGAGCGCCCGCACGCTCATTTGGTGGGTT
640 ATCCCCGGCTTGCA-CATCCCGCCCCTCTGGCCGGATGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
19625100 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGG
704 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * * * *
19625165 ATCGAACCAAGGGTTACGGTC-GCAAATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
769 ACCG-ACCGAGGGTTGCGG-CAGCAAATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTT
* * * * *
19625229 CGTCGGGGCACCATCATCGGAGCATCGCCAAAGAACCTGACCGACGGCATTGGGGTTCTGAG-GA
832 C-ACCGGG---CATCA-CGGAGCATCACCGAAGAACCTGA-CGACGGCATTGGGGTTC-CAGCGA
19625293 TCGA
890 TCGA
*
19625297 GGGGCCGAAGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGCCG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
19625362 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGGGATTTTACAGGTT
64 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
19625427 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTG
129 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT-GTCACAAAATCTTG
* * * * * *
19625492 TACACTTTGAGTTTTTGGCAGAATTTTTTTGTGCACTCCAAAAAAAATACAAGGATCACATCTTC
193 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTAC
* * **
19625557 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGA
258 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAA
*
19625622 AAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
323 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * * *
19625687 ATGTTTGAATTTACAAGTCATAAAAATGGCATTGGCACACAGAAATATGAAGATATGCCTAAACC
388 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * * *
19625752 CACCTACCACCCTATCGATTCACAGCTTGCGCATCCCGTCTCTCTGGTCGACTTAGCGCTCGCCC
453 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCC
*
19625817 GCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
518 GCCCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
** * ** * * *
19625882 AGATCGGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCAGCTGATCCCCG
583 AGA-CCAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCG
* * * * * *
19625947 GCTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCACCCGCACGGTCGTTTTGTGGGTTGACTTAGG
647 GCTTGCACATCCCGCCCCTCTGGCCGGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
19626012 CATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGGCT
712 CATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GACC
* * * * *
19626077 GAGGGTTGCGGTAGCATATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGG-G
776 GAGGGTTGCGGCAGCAAATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCA
** * * *
19626141 T-AC----CATCACCGGGGAACCTGACCAGCGGCATTGGGGTTCCAACGATCGGG
841 TCACGGAGCATCACCGAAGAACCTGACGA-CGGCATTGGGGTTCCAGCGATC-GA
* *
19626191 GGGGTCGGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCC
1 GGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * * *
19626256 CCTATCCCACATGAAACCTCAAGAACTCACACCCCGTTAAAGAGTATTTGAGATTTTACAGGTTT
65 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
** * * *
19626321 GCTGCCAGCGGCCATTACAGTGTTTGAAATTGGGACACTTTTTTCAAATGTTCACAAAATCTTGT
130 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG-TCACAAAATCTTGT
* * *
19626386 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCACGTCTACC
194 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
19626451 AACTTTCGGGCCAAAAATCCTTCCGAAAAAATTTTACAAAATCCCGAACCGTAAAAAGTTTCAAA
259 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
*
19626516 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCAT
324 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
19626581 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTCCCTAAACCC
389 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* *
19626646 ACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGCGCCCACCCG
454 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCG
* * *
19626711 CCCGGCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCA
519 CCCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
19626776 GACCAACCGAGGGTTGTGCCAGTAGGATCGACAGCACACATAGGGGGACTCAGCCGATCCCCGGC
584 GACCAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGGC
* * * *
19626841 TTGCACATCTCACCCCTCTGGTCGGATAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
649 TTGCACATCCCGCCCCTCTGGCCGGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * *
19626906 TATGGAGTTCATTCCCAATCTAAGCATATGGAGTTGAATCTCAGTCTAAGATCGGACCAGACCGA
714 TACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGA
* *
19626971 GGGTTGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTTCTTCACCGTGGCA
778 GGGTTGCGGCAGCAAATGCTGGGCTCGAGCATGTGCTGGTGCCGCA-TTTTTCTTCACCG-GGCA
* * * *
19627036 TCACCGGAGCATCACTGAAGAACCTGATCGATGGAATTCGGGTTCCAGCGATCGA
841 TCA-CGGAGCATCACCGAAGAACCTGA-CGACGGCATTGGGGTTCCAGCGATCGA
19627091 GTGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 G-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
19627156 CCTATCCCCCATCAAACCTCGGGAACTCACACCCTCTTAAAGGGCATTTGAGATTTTACAGGTTT
65 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
19627221 GCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGAACACAAAATCTTGT
130 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG-TCACAAAATCTTGT
* *
19627286 ACACTTTGAGTTTTTAGCTGGATTTTTTTGTGCACACCAACAAAAATACAAGGATCACGTCTACC
194 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACC
** ** *
19627351 CGGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAGAAATCTCGAACCGTAAAAAGTTTCAAA
259 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
**
19627416 AAT-ATTGAAAAATAGAAAATAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
324 AATCA-TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
19627480 TTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGCATAAATATGAAGATGTGCCTAAACC
388 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * *
19627545 CACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGTCCGACGTAGTGCCCGCCC
453 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCC
* * *
19627610 GCCCGCCCGCCCGTTCGTTTCAT-TGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGAT
518 GCCCGCCCGCCCGCTCGTTTCGTCT-GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
* *
19627674 CACACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCA
582 CAGACCA-ACCGAGGGTTGCGACAGCAGGATCGACAGCA
19627713 TGCCGAGGTG
Statistics
Matches: 2138, Mismatches: 248, Indels: 66
0.87 0.10 0.03
Matches are distributed among these distances:
892 210 0.10
893 567 0.27
894 9 0.00
895 1 0.00
896 1 0.00
897 2 0.00
898 1 0.00
899 3 0.00
900 526 0.25
901 68 0.03
902 2 0.00
903 4 0.00
904 277 0.13
905 3 0.00
907 7 0.00
908 2 0.00
909 161 0.08
910 24 0.01
911 86 0.04
912 184 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGTCACAAAATCTTGTAC
ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCC
CGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
CCAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTT
GCACATCCCGCCCCTCTGGCCGGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGG
TTGCGGCAGCAAATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCATCACG
GAGCATCACCGAAGAACCTGACGACGGCATTGGGGTTCCAGCGATCGA
Found at i:19629518 original size:26 final size:26
Alignment explanation
Indices: 19629488--19629540 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19629478 GTTGACTTAG
*
19629488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19629514 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19629540 G
1 G
19629541 ATAGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:19630430 original size:26 final size:26
Alignment explanation
Indices: 19630391--19630443 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19630381 GTTGACTTAG
19630391 GCATATGGAATTCATTCCCAGTCTAA
1 GCATATGGAATTCATTCCCAGTCTAA
*
19630417 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAATTCATTCCCAGTCTAA
19630443 G
1 G
19630444 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAATTCATTCCCAGTCTAA
Found at i:19631335 original size:900 final size:899
Alignment explanation
Indices: 19628626--19637369 Score: 10947
Period size: 900 Copynumber: 9.7 Consensus size: 899
19628616 TGGATTGACT
* * * *
19628626 TAAGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCT
* * * * *
19628691 GGGCTTGGGCATGTGTTGGTGCCGCATTTTTCATCGTTGGGG---CA----C----CATCGTCAG
65 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * *
19628745 AGAACCTGATCGCCCGCATTGGGGTTCCGATGATCGGGGGGGCCGGGTGTGGTGTGCACACATGA
130 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-G-GGTGTGCGCACATGA
* * * **
19628810 TGTGTGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTACCCCTCCCCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
19628875 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCGTTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
19628940 AAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * ** * **
19629005 TTTGTGCATGCAAACAAAAGTGGAAGGATCACGTCTACTAAGTTTGGGGCCAAAAGCCCTTCCGA
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
*
19629070 AAAAATTTT-AAAAATCTGAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
453 AAAAATTTTAAAAAATCCG-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
19629134 TCTTGCCATGAGACTTCACGTGAAGGCTCAAGGGACTATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
19629199 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19629264 TGCGCATCCCGTCTCTCTGGCCGGCATAGTA----CCCGCCCG-C-CCGCTCGTTTCGTCGTTTG
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTG
* * * * * * ** * *
19629323 GCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATC-GAACTGAATCAAGGGTTACGGTAGCATG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGACAGTAGG
* * * ** * *
19629387 ATCGGCAACACGCAAAGGGGGACCCGATCGATCCTTGACTTGCGCATCCCGCCCCTCTGGCCGGT
776 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
19629452 TGAGCGTCCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
19629511 TAAGCATACGGAGTTCATTCCAAGTCTAAGATAGGATCGGACCGAGGGTTGCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCT
* * * **
19629576 GGGCTCGGGCATGTGCTGGTGCCACCTTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGG
65 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* * * *
19629641 A-AACCTGACCGACGGAATTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGTGTGCACACATGAT
130 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGAT
* *
19629705 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTTGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
19629770 CACA-CCACTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAGTAGCCATTAATGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
19629834 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTC
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * * *
19629899 TTGTGCATTACAAAAAAAAAAAATAAAAGGATCACTTTTACCAAGTTTAGGG-CAAAAACTCCTT
389 TTGTGCA-TGC---CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTT
* * *
19629963 CCGAAAAAATTTTTAAAAATCCTGAA-CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGA
449 CCGAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
19630027 GTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGACATAA
513 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
19630092 AAATGGTAGTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCA--CTATCGATCCAC
578 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
19630155 GGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCACCTGCCCACCCGCCCCTTCGTTTCAT
643 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCC-GCCGCCGC-TCGTTTCGT
* ** *
19630220 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTAAGGGTTGTGACA
706 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACA
* ** * ** * *
19630285 GTAGGATTGGTGGCACACAGAGGGGGACCCGGTCGATCCCCATCTTGCACGTCCCGCCCCTCTGG
771 GTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * ** * *
19630350 CCGGCTGGGTGCCCACACGCTCGTTTTATGGGTTGACTTAGGCATATGGAATTCATTCCCAGTC
836 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
19630414 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAGCACATTCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCT
* * * * * * * **
19630479 AGGTTCAGGCATGTGCTGGAGTCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATTATCGG
65 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* * *
19630544 AGAACCTGACTGGCGACATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGTGTGCGCACATGATG
130 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
19630608 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTTGATAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19630673 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19630738 ATGGGGACACTTTTTTGAAATGGTCACGAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19630802 TGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAA
390 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* ** **
19630867 AAATTTTAAAAAATCCAAACCGCAAAAAGTTTTGAAAATGGTGAAAAATAGAAAACGAGTCGTCT
455 AAATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
19630932 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-ATAAAATGG
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGG
** * * *
19630996 CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGACTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19631061 CGCATCCCATCTCTCTGGCCGACGTACTATCCGCCCGCCCGTCCGCCGGCTCATTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCG-CCGCC-GCTCGTTTCGTCGGTTG
* * *
19631126 GCTTAGGCATACAGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTGCGACAGTAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGTAGGA
* * * * *
19631191 TCAGCAGCATGCAGAGGGGAACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGACT
777 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * **
19631256 GAGCGCTCGCACGCTGGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTC
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
19631314 TAACCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCT
* * *
19631379 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATTGTCGG
65 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* ** * * * *
19631444 AGAACCTGACCGGCGGCTTTGGGGTTCCGGTGATCGGAGGGGTCGGGGGGTGTCCGCAGATGATG
130 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
19631509 TGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19631574 ACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19631639 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATGTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19631704 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-T--AAAA
390 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
*
19631766 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
455 AAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * ** *
19631831 CTACCATGAAACTTCACGTGAACACTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
19631896 CATTGCCATGGAGAAATATGAAGATGTGCCTAAAGCCACCTACAACCCTATTGATCCATGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * *
19631961 CGCATCCCGTCTCTCTGATCGACGTAGTGCCCGCCCACCCGACCGTCCGCTCGTTTCGTCAGTTA
649 CGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCG-CCG-CCGCTCGTTTCGTCGGTTG
* * *
19632026 GCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGACTGAGGGTT-C--CAGTAGCA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGTAG--
* * * * * * *
19632088 AGATCGGTAGCACGCAGAGGGGGACTCGGTCTATCCCTGGCTTGCACATCTCGCCCCTCTAGCCG
775 -GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
19632153 GCTGAACGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTC
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
19632214 TAAG-AT-C-G-G---------A--C-----T-----AGACCGAGGGTTACGGCAGCACATGCTG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATGCTG
* * * *
19632254 GGCTTGGCCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGA
66 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* * *
19632319 GAACCTGACTGGCGGTATTGGGGTTACTG-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
131 GAACCTGACCGGCGGCATTGGGGTT-CCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGAT
* * * * *
19632383 GTGCGATGGGTGCTGGTATTTGGCCCTTAGATTGGCCCCGTATCCCTCATTAAACCTTGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
19632448 CACACCCCCTTAAAGAGCATTTGAAATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
19632513 AATGGGGACACTTTTTTCAATTGGTCTCAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
19632578 TTGGGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCCTTCCAA
389 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGA
* * * *
19632643 AAAAATTTTAAAAAATCCCGAACCACAAAAGGTTTCAAAAATCATGAAAAATAGAAAATGAGTCA
453 AAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
19632708 TCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
19632773 GGCATTCACATGCAGAAATACGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * * *
19632838 TGCGCATCCCGTCTTTCTGGCTGGCATAATGCCCGCCCGTCTGCCAAGCAGCTCGTTTCGTCGGT
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCC--GCCGCTCGTTTCGTCGGT
* * * * * ** * ** ** * *
19632903 TAGCTTGGGCATACGGAGTTCATTTCCAGTCTCAGATCAGACTGGACAGAGGGTTATGGTAGCAA
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGTAG
* ** * * * ** *
19632968 CATTAGCAGCACGCAGAGGGGGACCCGGCCGATTCTCGGCTTATGCATCCCACCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
19633033 CT-AGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
19633090 T---C-TA---AG---ATT----G-----GA-C---CAGACCAAGGGTTGCGACAGCACATCCTG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATGCTG
* * * ** * * *
19633132 GGCTTGGGCATGTGATGGTGCCACATTTTTCTTCACCAGGGCACCATCACTGGAGCATCGTCGGA
66 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* ** *
19633197 GAACCTGACCGGCAGCATTGGGGTTCCGGTGATC--GGGGGCCTGGGGGGTGTGCACACATGATG
131 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
19633260 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
19633325 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAGGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
19633390 ATGGGGACCCTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAAATGTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * * * * ** *
19633455 TGTGCATGCCAGTAAAAATACAAGGATCACATATGCAAAGCTTGGGGTTAAAACA-CCTTCCGAG
390 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAA
* * ** *
19633519 AAAATTTTAAAAAATCTCGAACCGTAAAAGGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGT
454 AAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
19633584 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
19633649 GCATTGGCATGCAGAAATATGAAGGTGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
19633714 GCGCATCCCGTCCCTCTAGCTGGCGTAGTGCCGGCCCGCCCG-C-CCGCTCGTTTCATCGGTTGG
648 GCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGG
* * * * ** *
19633777 CGTAGGTATACGGTGTTCATTCCCAGTCTAAGATCGAACCAGATTGAGGGTTTC-AGCAGTAGGA
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGTAGGA
*** * *
19633841 TCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCCGGCCGACT
777 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
19633906 GAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
19633964 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTACGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCT
* * * * **
19634029 GGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGG
65 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* * * *
19634094 AGAACTTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGGTG
130 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
19634159 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCGTCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19634224 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19634289 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19634354 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTT-CGAAA
390 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * *
19634418 AAATTATAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATC
455 AAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
19634483 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
19634548 CATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACAGCTTA
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19634613 CGCATCCCGTCTCTCTGACCGGCGTAGTACCCGCCTGCCCGTCTGCTCGCCCGCTCGTTTCGTCG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCG-CC--C-GC-CG-CCGCTCGTTTCGTCG
* * * *
19634678 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCAAGGGTTGTGGA-AG
708 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-CGACAG
* * * * *
19634742 CAGGATCGGCAGCACACAGAAGGGGACCC-GACTGATCCCCTGCTTGCGCATCCTAC-CCCCTCT
772 TAGGATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCC--CGCCCCTCT
* * * **
19634805 GGCCGGTTGAGCGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGT
834 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
19634870 C
899 C
* * * *
19634871 TAAGCACACGAAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCT
* **
19634936 GGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGAT-GGGGCACCATCGCCAAAGCATCGTCG
65 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGCCGGAGCATCGTCG
* * *
19635000 GAGAACCTGACCGGCGGCATTGGGGTTCCCATGATCGGGCGGGGCCGGGGGGTGTGCGCACAAGA
129 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGGCCGGGGGGTGTGCGCACATGA
19635065 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
19635130 TCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
19635195 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTGTTAGCTGAAATTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
19635260 TTTATGCATGCCAA-AAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTACATGCG
388 TTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
** * *
19635324 AAAAAATTTT-AAAAATCCCGAACCGCTGTATGAATTTTAAAAAATCCCTAACTGCATTTTAAAA
452 AAAAAATTTTAAAAAAT-CCGAACCGC---AAAAAGTTTCAAAAAT--C--A-TG-A----AAAA
* * * * *
19635388 AATTACAAGGA-TCATGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
503 TA-GAAAACGAGTC--GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
19635452 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
565 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
19635517 CCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGTCGACGTA-TGACCCACCC-CTCCGCCC
630 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-ACCCGCCCGC-CCG-CC
* * * *
19635580 ATCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCCTTCCCCAGTCTAAGATCGGACCGG
692 -GCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCAG
* * * * * ** * * * *
19635645 ACTGAGGGTTACGGCAGTAGGATCGACAGCACACAGAAAGGGATCCGGTTGATCACCGACTTGCG
755 ACCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* * *
19635710 CATCCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGG
820 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
19635775 AGTTCATTCCCAGTT
885 AGTTCATTCCCAGTC
* * * * * * *
19635790 TAAGCATACGAAGTTCATTCCCAGTCTACGATCAGATCGGACCAAGGGTTACGGCAGCACATACT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCT
* * ** *
19635855 GGGCTCGGGCATTTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATAATCAG
65 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * * * * * *
19635920 AGAACCTAACCGACGACAATAGGTTTTCGATGATCGGGGGGGCCGGGGGGCGGGGTGTGCGCATA
130 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC----GG-GGGGTGTGCGCACA
*
19635985 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
190 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
19636050 AACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGT
255 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
**
19636115 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACC
320 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * * *
19636180 TTTTTTGTGCATGCCAACAAAATTACAAGTATCACTTTTACCAAGTTTGGGGCCAAAACTCTTTT
385 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
* ** * ** *
19636245 TGAAAAAATTTTCCAAAATCTCGATCCGCAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAG
450 CGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * * *
19636310 TCGTCTTGACACGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAA
514 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
19636375 AATGGCATTGGCAAGTAGAAGTATGAAGATGTGCCTAAACCCACCT-CCAACCCTATCGATCCAC
579 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCCTATCGATCCAC
* * * * * * * *
19636439 GGCTTGCACATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCAGCTTGCTCATTTTGT
643 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCC-GC-CGCTCGTTTCGT
* *
19636504 CGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCGAGGGTTGC-AG
706 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGA-
* * * * * *
19636567 CAGGAGGA-CTGGCAGCATGCAGAGGGGGTCCCAGCCGATCCCCGACTTGCGCATCCCGCCCCTC
769 CAGTAGGATC-GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * * * *
19636631 TGGCCGGCTGAGCGTCCGTACGCTCGTTTCATCGATTGACTTAGGCATACAGATTTCATTCCCAG
833 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
19636696 TC
898 TC
* * * *
19636698 TAAGCATGCGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGACAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGACCGAGGGTTGCGGCAGCACATGCT
* * * * ** *
19636763 AGGCTCAGGCATTTGCTGCTGCTACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGG
65 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
19636828 AGAACCTGACCGGCGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
130 AGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
*
19636892 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
19636957 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCTGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
19637022 AATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGTGTTTTTAGCTGAATTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTT
* * *
19637085 TTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTCTGA
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * ** *
19637150 AAAAATTTTAAAAAATCTCGAATCGCAAAAAATTTTGAAAATCATGAAAAATAGAAAATGAGTCG
453 AAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
19637215 TCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19637280 GGCATTGGCAGGTAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
19637345 TGGGCATCCCGTTTCTCTGGCCGAC
647 TGCGCATCCCGTCTCTCTGGCCGAC
19637370 CGAGCGCCCG
Statistics
Matches: 6823, Mismatches: 872, Indels: 311
0.85 0.11 0.04
Matches are distributed among these distances:
871 115 0.02
872 52 0.01
873 2 0.00
874 120 0.02
875 471 0.07
876 252 0.04
877 5 0.00
878 163 0.02
879 325 0.05
880 2 0.00
881 2 0.00
882 3 0.00
884 3 0.00
885 94 0.01
887 1 0.00
888 3 0.00
892 1 0.00
893 124 0.02
894 82 0.01
895 80 0.01
896 15 0.00
897 200 0.03
898 523 0.08
899 286 0.04
900 749 0.11
901 191 0.03
902 485 0.07
903 531 0.08
904 42 0.01
905 1 0.00
906 109 0.02
907 216 0.03
908 561 0.08
909 196 0.03
910 7 0.00
911 19 0.00
913 1 0.00
915 2 0.00
916 4 0.00
917 1 0.00
918 7 0.00
919 248 0.04
920 72 0.01
921 20 0.00
922 8 0.00
923 413 0.06
924 16 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
AATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGTAGGATCGG
CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
Found at i:19633978 original size:26 final size:26
Alignment explanation
Indices: 19633941--19633993 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19633931 GTTGACTTAG
19633941 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19633967 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
19633993 G
1 G
19633994 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19635270 original size:908 final size:903
Alignment explanation
Indices: 19633069--19637367 Score: 5720
Period size: 908 Copynumber: 4.7 Consensus size: 903
19633059 GTTGACTTAG
* * * * *
19633069 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGACAGCACATCCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
19633134 CTTGGGCATGTGATGGTGCCACATTTTTCTTC-ACCAGGGCACCATCACTGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGATCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
19633198 AACCTGACCGGCAGCATTGGGGTTCCGGTGATC--GGGGGCCTGGGGGGTGTGCACACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
19633261 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19633326 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAGGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19633391 TGGGGACCCTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAAATGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
** * * * * * ** * *
19633456 GTGCATGCCAGTAAAAATACAAGGATCACATATGCAAAGCTTGGGGTTAAAACACCTTCCGAGAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAA
* * *
19633521 AATTTTAAAAAATCTCGAACCGTAAAAGGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19633586 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19633651 ATTGGCATGCAGAAATATGAAGGTGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19633716 GCATCCCGTCCCTCT-AGCTGGCGTAGT-GCCG--GCCCGCCCGCCCGCTCGTTTCATCGGTTGG
649 GCATCCCGTCTCTCTGAGCCGGCGTAGTACCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * ** *
19633777 CGTAGGTATACGGTGTTCATTCCCAGTCTAAGATCGAACCAGATTGAGGGTTTCAGCAGTAGGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAGTAGGAT
* * * * * *
19633842 CGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCCGGCCGACTG
779 CGGCAGCACACAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
19633907 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19633967 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTACGGCAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGG
* * * **
19634031 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTC-ATCGGGGCACCATCGTCGGAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGATCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * * *
19634095 GAACTTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGGTGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
19634160 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCGTCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19634225 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19634290 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
*
19634355 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCGAAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAA
* * ** * *
19634420 ATTATAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
19634485 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
19634550 TTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACAGCTTACG
585 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
19634615 CATCCCGTCTCTCTGA-CCGGCGTAGTACCCGCCTGCCCGTCTGCTCGCCCGCTCGTTTCGTCGG
650 CATCCCGTCTCTCTGAGCCGGCGTAGTACCCGCC-GCCCG-C--C-CGCCCGCTCGTTTCGTCGG
* * ** * *
19634679 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCAAGGGTTGTGGAAGCA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAGTA
*
19634744 GGATCGGCAGCACACAGAAGGGGACCCGACTGATCCCCTG-CTTGCGCATCCTAC-CCCCTCTGG
775 GGATCGGCAGCACACAGAAGGGGACCCGACCGATCCCC-GACTTGCGCATCC--CGCCCCTCTGG
* * * **
19634807 CCGGTTGAGCGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCT
837 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
19634872 AA
902 AA
* ** * *
19634874 GCACACGAAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* **
19634939 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGAT-GGGGCACCATCGCCAAAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGATCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
19635003 AACCTGACCGGCGGCATTGGGGTTCCCATGATCGGGCGGGGCCGGGGGGTGTGCGCACAAGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGG-GGGGCCGGGGGGTGTGCGCACATGATGT
19635068 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19635133 CTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19635198 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTGTTAGCTGAAATTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
* * * * *
19635263 ATGCATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTACATGCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCGAAAA
* ** * *
19635328 AATTTT-AAAAATCCCGAACCGCTGTATGAA-TTTTAAAAAATCCCTAACTGCATTTTAAAAAAT
454 AATTTTAAAAAATCTCGAACCGC---AAAAAGTTTT-GAAAAT--C--A-TG-A----AAAATA-
* * * *
19635391 TACAAGGA-TCATGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
504 GAAAACGAGTC--GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
19635455 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
567 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * **
19635520 ATCGATCCACGGCTTACGCATCCCGTCTCTCT-AGTCGACGTA-TGACCCACCCCTCCGCCCATC
632 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGAGCCGGCGTAGT-ACCCGCCGC-CCGCCCGCC
* * ** *
19635583 CACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCCTTCCCCAGTCTAAGATCGGACCGGACT
695 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCAAACC
* * * * * *** *
19635648 GAGGGTTACGGCAGTAGGATCGACAGCACACAGAAAGGGATCCGGTTGATCACCGACTTGCGCAT
759 GAGGGTTGCAGCAGTAGGATCGGCAGCACACAGAAGGGGACCCGACCGATCCCCGACTTGCGCAT
* * *
19635713 CCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGT
824 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
19635778 TCATTCCCAGTTTAA
889 TCATTCCCAGTCTAA
* * * * *
19635793 GCATACGAAGTTCATTCCCAGTCTACGATCAGATCGGACCAAGGGTTACGGCAGCACATACTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * ** *
19635858 CTCGGGCATTTGCTGGTGTCGCATTTTTCTTCG-TCGGGGCACCATCGCCGGAGCATAATCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGATCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * * * *
19635922 AACCTAACCGACGACAATAGGTTTTCGATGATCGGGGGGGCCGGGGGGCGGGGTGTGCGCATATG
131 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCC----GG-GGGGTGTGCGCACATG
*
19635987 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
191 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
19636052 CTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCT
256 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
**
19636117 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACCTT
321 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT
* * * * * * *
19636182 TTTTGTGCATGCCAACAAAATTACAAGTATCACTTTTACCAAGTTTGGGGCCAAAACTCTTTTTG
386 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCG
** * * *
19636247 AAAAAATTTTCCAAAATCTCGATCCGCAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTC
450 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
* * * *
19636312 GTCTTGACACGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
19636377 TGGCATTGGCAAGTAGAAGTATGAAGATGTGCCTAAACCCACCT-CCAACCCTATCGATCCACGG
580 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCCTATCGATCCACGG
* * * * * ** * *
19636441 CTTGCACATCCCATCTCTCTG-GCTGGCGTAGTGCCCGCCCGCCCGCCAGCTTGCTCATTTTGTC
644 CTTGCGCATCCCGTCTCTCTGAGCCGGCGTAGTACCCG-CCGCCCGCCCGCCCGCTCGTTTCGTC
* * *
19636505 GGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAG
708 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAG
* ** * *
19636570 GAGGA-CTGGCAGCATGCAGAGGGGGTCCC-AGCCGATCCCCGACTTGCGCATCCCGCCCCTCTG
773 TAGGATC-GGCAGCACACAGAAGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTG
* * * * * * *
19636633 GCCGGCTGAGCGTCCGTACGCTCGTTTCATCGATTGACTTAGGCATACAGATTTCATTCCCAGTC
836 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
19636698 TAA
901 TAA
* * * * * * *
19636701 GCATGCGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
19636766 CTCAGGCATTTGCTGCTGCTACATTTTTCTTCG-TCGGGGCACCATCGCCAGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGATCGGGGCACCATCGCCGGAGCATCGTCGGAG
*
19636830 AACCTGACCGGCGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGA-TGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
19636894 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19636959 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCTGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19637024 TGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGTGTTTTTAGCTGAATTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAAATTTTT
* * * *
19637087 TGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTCTGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAA
* * *
19637152 AAATTTTAAAAAATCTCGAATCGCAAAAAATTTTGAAAATCATGAAAAATAGAAAATGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
19637217 TTGCCATGAAACTTCACGGGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19637282 CATTGGCAGGTAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
19637347 GGCATCCCGTTTCTCTG-GCCG
648 CGCATCCCGTCTCTCTGAGCCG
19637368 ACCGAGCGCC
Statistics
Matches: 2978, Mismatches: 361, Indels: 120
0.86 0.10 0.03
Matches are distributed among these distances:
898 344 0.12
899 255 0.09
900 7 0.00
901 4 0.00
902 298 0.10
903 157 0.05
904 2 0.00
905 1 0.00
906 114 0.04
907 210 0.07
908 562 0.19
909 197 0.07
910 12 0.00
911 16 0.01
913 1 0.00
915 2 0.00
916 4 0.00
917 1 0.00
918 7 0.00
919 247 0.08
920 75 0.03
921 15 0.01
922 14 0.00
923 420 0.14
924 13 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGATCGGGGCACCATCGCCGGAGCATCGTCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAA
TTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGAGCCGGCGTAGTACCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAGTAGGATCG
GCAGCACACAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19637456 original size:26 final size:26
Alignment explanation
Indices: 19637406--19637458 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19637396 GTTGACTTAG
* *
19637406 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
*
19637432 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
19637458 G
1 G
19637459 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAATCTAA
Found at i:19638012 original size:724 final size:722
Alignment explanation
Indices: 19636602--19638155 Score: 2222
Period size: 724 Copynumber: 2.1 Consensus size: 722
19636592 GGGTCCCAGC
* * *** * * * * * *
19636602 CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGTACGCTCGTTTCATCGAT
1 CGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGACCGAGCGCCCGCACGCTCGTTTTATCGGT
* * * **
19636667 TGACTTAGGCATACAGATTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATTG
66 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCA
* * * *
19636732 GACTGGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGGCATTTGCTGCTGCTACATTTTTCTT
131 GACCGGACCAAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGCTGCTGCCACATTTTTCTT
*
19636797 CGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGAT
196 CATCGGGGCACCAT---C----CA-C-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGAT
*
19636862 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
252 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGA
19636927 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
317 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
19636992 TTTGCTGTCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTT
382 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTT
** * *
19637057 GTACACTCTGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTA
447 GTACACTCTGAATTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * **
19637122 CCAAGTTTGGGGCTAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAATCGCAAAAAATTTTG
512 CCAAGTTTGGGGCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAATTTCA
* *
19637187 AAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACA
577 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGGGAAGGCTTAAGGGACA
* *
19637252 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGTAGAAATATGAAGATGCGCCTAAAC
642 ATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACGTAGAAATATGAAGATGCGCCTAAAC
19637317 CCACCTACCACCCTAT
707 CCACCTACCACCCTAT
* *
19637333 CGATCCACGGCTTGGGCATCCCGTTTCTCTGGCCGACCGAGCGCCCGCACGCTCGTTTTATGGGT
1 CGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGACCGAGCGCCCGCACGCTCGTTTTATCGGT
* * *
19637398 TGACTTAGGCATACGGAGTTCATTTCCAATCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCA
66 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCA
* * * * * * *
19637463 GACCGGACCAAGGGTTGTGGCATCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
131 GACCGGACCAAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGCTGCTGCCACATTTTTCTT
* * *
19637528 CAT-GGGGCACCAT-CA-TCGGAGAACTTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCG
196 CATCGGGGCACCATCCACTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATC-GGGGG-G
**
19637590 AGGGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA-TGTGGCCCTTATATTGACCCC
259 -GCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT-TGGCCCTTATATTGACCCC
* * *
19637654 CTATCCCTCATCAAACCTCGAGAGCTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
321 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
19637719 CTGCCAGTAGCCATTAAAGTGTCT-AAATTGGGGACACTTTTTTCAAATGGTCACAAAATGTTGT
386 CTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGT
* * *
19637783 ACAGTCTGAATTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATGACGTCTACC
449 ACACTCTGAATTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* **
19637848 AAGTTTGGGG-AAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAGGTTTCAA
514 AAGTTTGGGGCAAAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAATTTCAA
* * *
19637912 AAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCA
578 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGGGAAGGCTTAAGGGACAA
* * *
19637977 TTGTATGAATTTACAAGCTATAAAAATATCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
643 TTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACGTAGAAATATGAAGATGCGCCTAAACC
19638042 CACCTACCACCCTAT
708 CACCTACCACCCTAT
* * *
19638057 CGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGA-CGTAGTGCCCGCCCGCTCATTTTATCGG
1 CGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGACCG-AGCGCCCGCACGCTCGTTTTATCGG
*
19638121 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
65 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
19638156 AGATCGGACT
Statistics
Matches: 734, Mismatches: 80, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
719 36 0.05
720 5 0.01
721 1 0.00
722 10 0.01
723 153 0.21
724 354 0.48
730 10 0.01
731 165 0.22
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (722 bp):
CGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGACCGAGCGCCCGCACGCTCGTTTTATCGGT
TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCA
GACCGGACCAAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGCTGCTGCCACATTTTTCTT
CATCGGGGCACCATCCACTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGC
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATC
CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTCT
GAATTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAATTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGGGAAGGCTTAAGGGACAATTGTATGA
ATTTACAAGCCATAAAAATAGCATTGGCACGTAGAAATATGAAGATGCGCCTAAACCCACCTACC
ACCCTAT
Found at i:19639207 original size:26 final size:26
Alignment explanation
Indices: 19639171--19639223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19639161 GTTGACTTAG
*
19639171 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
19639197 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19639223 G
1 G
19639224 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19641406 original size:903 final size:902
Alignment explanation
Indices: 19637333--19647118 Score: 11083
Period size: 903 Copynumber: 10.9 Consensus size: 902
19637323 ACCACCCTAT
* * *** * * * **
19637333 CGATCCACGGCTTGGGCATCCCGTTTCTCTGGCCGACCGAGCGCCCGCACGCTCGTTTTATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
19637398 TGACTTAGGCATACGGAGTTCATTTCCAATCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * *
19637463 GACCGGACCAAGGGTTGTGGCATCACATGCTTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
131 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * **
19637528 CAT-GGGG---CA----C----CATCATCGGAGAACTTGACCGGCGGCATTGGGGTTCCGGTGAT
196 CGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
**
19637581 CGGGGGGCGAGGGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA-TGTGGCCCTTAT
261 CGGGGGG-G-CCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT-TGGCCCTTAT
* * *
19637645 ATTGACCCCCTATCCCTCATCAAACCTCGAGAGCTCATACCCCCTTAAAGAGCATTTGAGATTTT
322 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
19637710 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATTGGGGACACTTTTTTCAAATGGTCACA
387 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACA
* * * * *
19637774 AAATGTTGTACA-GTCTGAATTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGAT
451 AAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* ** *
19637838 GACGTCTACCAAGTTTGGGGAAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
515 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAA
* * *
19637903 AGGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTT
580 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* ** **
19637968 AAGGGACCATTGTATGAATTTACAAGCTATAAAAATATCATTGGCACGTAGAAATATGAAGATGT
645 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* *
19638033 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGACGTAG
710 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* ** *
19638098 T-----------GCCCGCCCGCTCATTTTATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
775 TGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * ** * * *
19638152 CTAAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC
840 CT-AAGATCAGAC-AGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGC
** * *
19638217 CGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
19638282 TGACTTAGGCGTACAGAGTTCATTCCTAGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
19638347 GATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTC-T
131 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * **
19638411 --T-----CACCA------GATCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGAT
196 CGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
*
19638463 C-AGGGGGCCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
261 CGGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
19638527 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACA
325 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
19638592 GGTTT-CTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAAAA
390 GGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
19638656 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAA-AAAAATACAAGGATCATG
454 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * **
19638720 TCTAGCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTATAAAAAGT
519 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
*
19638785 TTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
584 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
19638850 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
649 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
* * * *
19638915 AAACCCACCTATCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGACGTAGT---
714 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* *
19638977 -G--C-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGT-TGA
779 CGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-A
* * * ** * * * * * * *
19639037 GGATCAGACCGGGCTGAGGGTTGTGGTAGTAGGATCGACAGAACGCAGAGACGAACCCGGC
843 AGATCAGA-CAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGC
* * * * *
19639098 CGATCCCCGGCTCGTGCATCCCGCCCCT-TTGGCCGGCTGAGCGCCTGCACGCTCGTTTTGTGTG
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTT-GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
19639162 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * **
19639227 GGACCGGACCGAGGCTTGCGGCAGCACAAGTTGGGCTCGGGCATATGCTGGTACCATATTTTTCT
130 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* ** * * **
19639292 TCGTCGGGGCACCATCGCCGGATCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGGTGA
195 TCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * * * *
19639357 TCGGGGGGGTCGGGGGGGGTGCGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCCTTTATAT
260 TCGGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
19639422 TGGCCCCCTAT-CC-CATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTAC
324 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
19639485 AGGTTTGTTGCCAGTAGCCTTTAAAGTGTCTGAAAATGGGGACACTTTTTTTGAAATGGTCGCAA
389 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACAC-TTTTTTCAAATGGTCACAA
* * *
19639550 AATCTTGTAGACTTTGAGATTTTAGCTGAATTTTTATT-TGCATGCCAACAAAAATACAAGGATC
452 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TTGTGCATGCCAACAAAAATACAAGGATC
* * * * * *
19639614 ACATCTATCATGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAA
516 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
19639679 AGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTA
581 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
** * *
19639744 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCATAAATATGATGATGTG
646 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
* *
19639809 CCTAAACCAACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
711 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * *
19639874 GCCCG--C-CTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTTGGCATATGGAGTTCATTCCCAGTC
776 GCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * ** * ** * * ** ** * *
19639936 -AAGGATCAGACCGGGCTGATGGTTGTTGTAGTAGGATCAACAGCACGCAGAGACAGACCTGAC
841 TAA-GATCAGA-CAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGC
* * * *
19639999 CGATCCTCGGCTCGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
19640064 TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATGCAGAGTTCACTCCTAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
19640129 GACCAGACCGAGGGTTGCGGCAACACATGCTGTTG-TCGGGCATGTGTTGGTGCAGCATTTTTCT
131 GACCGGACCGAGGGTTGCGGCAGCACATGCTG-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * *
19640193 TCGTCGGGGCACCAT---C---G-----TCGGAGAACCTGACCGACGGTATTGGGGTTCCAACGA
195 TCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * *
19640247 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCCATGGGTGCTAGAACTTGGCCCTTATATT
260 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
19640312 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGTGATTTTACA
325 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
19640377 GGTTTGCTGCCTGTAGCCATTAAAGTGTCCGAAATGGGGACACTCTTTTT-AAATGGTCACAAAA
390 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAATGGTCACAAAA
*
19640441 TCTT-TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACATGGATCACG
454 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
** * * ** * * *
19640505 TCTACCAAGTTTGGCACCAAAAATCATTCTGAAAAAATTGTAAAAAATCCCGAACAGCAAAAAGT
519 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
19640570 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
584 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
19640635 GACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATAAAGATGTGCCT
649 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
* *
19640700 AAACGCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
714 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * * * *
19640765 CGCCCACCAGTCTGCCCGTTCGTTTTGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
779 CGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * * * *
19640830 AGATTGGATCAGATCAAGGGTTGCAGCAGTAGGATCGGCAGCACGTAGAGGGGGACTCGGT
843 AGATCAGA-CAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGC
* * * *
19640891 CGATCCCCAGCTTGCGTATCCTGCCCCTCTTGCCGGCTGAGCCCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
19640956 TAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAGGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
19641021 GACCGGACCAAGGGTTACGGCAGCACATGCTAGGC-CTGAGCATGTGCTGGTGCCGCATTTCTCT
131 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
19641085 TAGTCGGGGCACCATCGCCCGAGCATCATCAGAGAACCTGACCGGTGGCATTGGGGTTCCGAGGA
195 TCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * *
19641150 TCGAGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATT
260 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
19641215 GGCCCCCTATCCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGGATTTGAAATTTTACA
325 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
19641280 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTCACAAAAT
390 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
19641345 CTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT-TGCGTGCCAACAAAAATAAAAGGATCACAT
455 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
19641409 CTACCAAGTTTGGGGCAAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
520 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-T
* * *
19641474 TTC-AAAATCGTGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
584 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
19641538 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAAGAAGATGTGCCT
649 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
* * *
19641603 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCTGGCATAGTGCC
714 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * * * *
19641668 CACTCGCCCGCCCACCCGTTCGTTTCATCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTA
779 CGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * ** * *
19641733 AGATCAGACCAGACTGATGGTTGCAGTAGCAGGATCAACAG-AGCGCAGACG-GGGATCTGGC
843 AGATCAGA-CAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCA-CGCAGA-GAGGGACCCGGC
* ** * * ** * *
19641794 CAATCCTTGACTTGCACATCCCGCCCCTC-TGTCTAGCTGAGCGCGCGTACGCTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTTG-CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
19641858 TTGACTTAGGCATACGGAGTTCTTTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * ** *
19641923 AGACCAGAATGAGGATAACGGCAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
130 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * *
19641988 TCATCGGGGCACCATCGCCGGAGCATCACCAGAGCATCGCCGGAGAACATGACCGACGGCATTGG
195 TCGTCGGGGCACCATCGCCGGAGCAT--------CAT---CGGAGAACCTGACCGGCGGCATTGG
* * * *
19642053 GGTTCCGACGATCGGGGTGGCC-GGGGGGTGTGCGCACATGATGTACGATGGGTTCGGGTACTTG
249 GGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
19642117 GCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
314 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
19642182 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAAT
379 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
19642247 GATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCGAA-AAAAATG
444 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATA
* * *
19642311 CAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAA
508 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
** *
19642376 CCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
573 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
** *
19642441 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAG
638 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * * *
19642506 AAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCACATCCCGTGTCTCTGGCC
703 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * ** * *
19642571 GGCGTAGTGCTCGCCCGCCCGCCCGTCCGCTCATTTTGTCATTTGGCTTAGGCATACAGAGTTTA
768 GGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
19642636 TTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC--AGAGGG
832 TTCCCAGTCTAAGATCAGAC-AGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGG
19642699 ----GG-
896 ACCCGGC
* *
19642701 -G---CCCGGC---CG-AT-------C-C---CCGG--GA-----TGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
19642740 TGACTTAGGCATACTGAGTTCATTCCTAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATTG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
** *
19642805 GACCGGACCGAGGGTTGCGAAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTAG-ATTTTTCT
131 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-CGCATTTTTCT
* * * *
19642869 TCG-C-CGG-AGCATCGCC---G-A--A----A-AACCTGACTGGGGGCATTGGGGTTCCGACGA
195 TCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* *
19642920 TC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGTTACTTGGCCCTTAT-TT
260 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
19642982 GGTCCCCTATCCCTCATCAAACCAT-GAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTAC
325 GGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
19643046 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
389 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
19643111 TCTTGTACACTTCGAGTTTTTGGTTGAATTTTTTTGTGCATACGAA-AAAAATTACAAGGATCAC
454 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCAC
* * * * * **
19643175 GTGTACCATGTTTGGGGTCAAAATTCCTTCC-AAAAAATTTTAAAAGATCCCGAATAGTAAAAAG
518 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * * *
19643239 TTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
583 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
** *
19643304 GGACCATTGTATGAATTTACAAGAGATAAAAATGGCATTGGCACCCAGAAATATGAAGATGTGCC
648 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
* * * * * *
19643369 TAAACCCACCTACCACTCTATCGATCCACGGGTTGCGCATTCTGTTTCTTTGGCCGGCGTAGTGC
713 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* *
19643434 CCGCCTAC-CCGCCCACCCGCTCGTTTCGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTC
778 CCGCC--CGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * **
19643498 TAAGATCAGACTGGACCAAGGGTTACGGCAACAGGATTGGCAGCACGCAGAGGGGGACCCGAT
841 TAAGATCAGAC-AGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGC
* * * * * * * ** *
19643561 CGATCCCCGACCTGCGCGTCTCGCCCCTCTAT-CCAGCTAAGCACCCGCACGCTTC-TTTTATGA
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCT-TGCCGGCTGAGCGCCCGCACGC-TCGTTTCGTGG
* * * *
19643624 ATTGACTTAGGCATACAGAGCTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
64 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
19643689 CGGATCGGATCGAGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
129 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
** ** * * *
19643754 TTCGTCGGGGCACCATCGTTGGAGCATCGCCGGAGAACCTGACCGGTGGTACTGGGGTTCCGACG
194 TTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* ** *
19643819 ATCGGGGGGGCCAGAGGGGGGTGTGTGCACATGATGTGAAATGGGTG-TGGGTACTAGGCCCTTA
259 ATCGGGGGGGCC-G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTA
*
19643883 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATCTGAGATTT
321 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
19643947 TACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCATA
386 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
19644012 AAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTATGCATGCCAACAAAAATACATGGATC
451 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
19644077 ACATCTACCAAGTTTGGGG-CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGCAAAA
516 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* ** * *
19644141 GGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG-CATGAAACTTCACGTAAAGGCTTA
581 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
***
19644205 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTGCAGAAATATGAAGATGTG
646 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
* * * *
19644270 CGTAAACCCACATACCACCCTATTGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGT
711 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * ** * * * ** **
19644335 GCCTGCCTGCCCGCCCGATCGATACCCGGCTTGCGCATCCCGCACCTCTGGCCGACTGAGCACCC
776 GCCCGCCCG-CCGCCCGCCCG---CTC-G-TTTCG--T--CG---GT-TGGCTTA--G-GCATAC
* * * **** ** * * * * ** *
19644400 GCACGCTCGTTTTGTGGGT-TGACTTAGGCATA-C--GGAGTT-CATTTCTAGTCTAAGCATAC-
824 GGA-GTTCATTCCCAGTCTAAGA-TCAGACAGACCAAGG-GTTGC--GGC-AG-C--AGGAT-CG
* * ** ** *
19644459 GAAGTTCATTCCCAGTCTAAGATCGAATCGAAC
879 GCAG--CA--CGCAG----AGAGGGACCCG-GC
** * ***** * * *
19644492 CGAGGGT-TACGG-TAGCAGGATCAGTAGCACACAGAGGGGGACTCGGTCAATCCTTGGATTACG
1 CGA---TCCCCGGCTTGC--G--CA-T--C-C-C---GCCCCTCTTG------CC--GGCTGA-G
* * ** * * * * * * **
19644555 CATCCCGC-CCCTC-TGGC-T-GGTTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCA-
42 C-GCCCGCACGCTCGTTTCGTGGGTTGA-----CTTA-G-GC-ATACG-GAGTTCA-TT-CCCAG
* *
19644615 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGACTGGACCGA
95 T-C--T---------------AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * * *
19644679 AGGTTGCGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTACCGCATTTTTCTTCGTCGTGGTAC
142 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * **
19644744 CATCACCGGAGCATCATCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC-
207 CATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* * **
19644808 GGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCC
272 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
19644873 CTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTACCA
337 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
19644938 GTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCAC--AATCTTCTACACATC
402 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
19645000 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTG
467 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * ** *
19645065 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAGATCATG
532 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
*
19645130 AAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
597 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** *
19645195 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCTTAAACCCACCTACC
662 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * * *
19645260 ACCCTATCGGTCAATGGCTTGCGCATCCCGTCTCTCTGGTCGGTGAAGTTCCCGCCCGACCGCCT
727 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCC
* * * * *
19645325 GCCTGCTCGTTTCATCGGTTAGCTTAGGCATACTGAGTTCATTCCTAGTCTAAGATCAGACCAGA
791 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGA
* * * ** *
19645390 CCAAGGGTTGCGGCAACAGCATCGGTAGCACGCAGAGAAAGACCCAGC
855 CCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGC
* * * * * *
19645438 TGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGTTCGTTTCAG-GGG
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTC-GTGGG
* *
19645502 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA-GAGAGTTCATTCCGAGTCTAAGAT
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-GAGTTCATTCCCAGTCTAAGAT
* * * * * ** * *
19645566 TGGATCAGACTGAAGGTTGCGGCAGCACATGCTGGGCTCGATCATGTGCTGGTGTCACATTTTTC
129 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * **
19645631 TTCATCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGGATTGGGGTTTTGACG
194 TTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * * *
19645696 ATCGAGGGGGCCGGGGGGGTGTGCGCCCATGATGTGTGAAGGGTGCTGGTACTTGGCCCTTATAT
259 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
19645761 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
324 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
19645826 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
389 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
19645891 TCATATACACTTCGAGTTTTTACCTG-ATTGTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
454 TCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCAC
19645955 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
518 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
** *
19646020 TTTTGAAAATCATGAAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
583 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* ***
19646085 GGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCC
648 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
* * * * *
19646150 TAAACCCACCTACCACCCTATCGATCCACGGATTGTGCGTCCCATCTCTCTGGCCGACGTAGTGC
713 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * *
19646215 CCG-TCGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
778 CCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * * * ** *
19646279 AAGATCGGACCAGACCAAGGATTGCGGCAACAACATCGGTAGCATGCAGAAAATGACCCAGC
842 AAGATCAGA-CAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGC
* * * * *
19646341 TGATCCCTGGCTTGTGCATCCCGCCCCT-TTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTT-GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
19646405 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GAGAGTTCATTCCGAATCTAAGAC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-GAGTTCATTCCCAGTCTAAGAT
* * ** * * *
19646469 CAGATCGGACCGAACGTTGCGGTAGCACATGCAGGGCTCGGTCATGTGCTGGTGTCC-CATTTTT
129 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCGCATTTTT
* * * * ***
19646533 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGGATTGGGATTTTAAC
193 CTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * * * * *
19646598 GATCGAGGGGGCC-GGGGGGTGTGCGCCCACGATGTGTGAAGGGTGCAGGTACTTGGCCCTTATA
258 GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
19646662 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
323 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
19646727 CAGTTTTACTGGCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
388 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * * *
19646792 ATCATATACACTTTGAGTTTTTACCTGATTTTTTTTGTGCATGCCAACAAAAAAACAAGGATCAC
453 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** *
19646857 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCTAAAAAATTTTAAAAAAATCTTGAA-CGCAAAAA
518 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAAATCCCGAACCGTAAAAA
* *
19646921 CTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
582 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
19646986 GGGACCATTGTATGGATTTACAAGGCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGC
647 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
* * * * **
19647051 CTAAACCAACCTACCACCCTATCGATCCATGG-TTGCACATCCCATCTCTCTGGCCGATGTAGTG
712 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
19647115 CCCG
777 CCCG
19647119 GCTAGCTCGT
Statistics
Matches: 7650, Mismatches: 973, Indels: 541
0.83 0.11 0.06
Matches are distributed among these distances:
853 304 0.04
854 202 0.03
855 58 0.01
856 29 0.00
857 1 0.00
859 1 0.00
861 1 0.00
864 6 0.00
867 2 0.00
868 1 0.00
874 1 0.00
875 2 0.00
876 1 0.00
878 264 0.03
879 212 0.03
880 11 0.00
881 354 0.05
882 92 0.01
883 1 0.00
884 168 0.02
885 1 0.00
886 131 0.02
887 5 0.00
888 295 0.04
889 87 0.01
890 60 0.01
891 79 0.01
892 264 0.03
893 3 0.00
894 77 0.01
895 59 0.01
896 117 0.02
897 262 0.03
898 3 0.00
899 19 0.00
900 161 0.02
901 479 0.06
902 456 0.06
903 1274 0.17
904 596 0.08
905 39 0.01
906 2 0.00
907 1 0.00
908 6 0.00
910 1 0.00
911 4 0.00
912 6 0.00
913 208 0.03
914 387 0.05
915 4 0.00
916 10 0.00
917 6 0.00
918 7 0.00
919 13 0.00
920 13 0.00
921 1 0.00
922 10 0.00
923 5 0.00
924 7 0.00
925 5 0.00
926 4 0.00
927 8 0.00
930 6 0.00
931 4 0.00
932 2 0.00
933 5 0.00
934 2 0.00
936 2 0.00
937 2 0.00
938 1 0.00
939 1 0.00
940 1 0.00
941 3 0.00
943 2 0.00
944 5 0.00
945 3 0.00
946 3 0.00
947 6 0.00
950 6 0.00
951 5 0.00
952 6 0.00
953 6 0.00
954 6 0.00
955 11 0.00
956 1 0.00
957 12 0.00
958 13 0.00
959 7 0.00
960 6 0.00
961 10 0.00
962 1 0.00
965 2 0.00
967 1 0.00
969 3 0.00
970 1 0.00
971 2 0.00
972 77 0.01
973 78 0.01
974 248 0.03
975 66 0.01
977 131 0.02
978 17 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
CGATCCCCGGCTTGCGCATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
CCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGC
Found at i:19641896 original size:26 final size:26
Alignment explanation
Indices: 19641867--19641919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19641857 GTTGACTTAG
* *
19641867 GCATACGGAGTTCTTTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19641893 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19641919 G
1 G
19641920 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19642784 original size:26 final size:26
Alignment explanation
Indices: 19642750--19642800 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19642740 TGACTTAGGC
* *
19642750 ATACTGAGTTCATTCCTAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
19642776 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19642801 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:19643674 original size:26 final size:26
Alignment explanation
Indices: 19643634--19643686 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19643624 ATTGACTTAG
19643634 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
*
19643660 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
19643686 G
1 G
19643687 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:19644464 original size:26 final size:26
Alignment explanation
Indices: 19644427--19644479 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19644417 GTTGACTTAG
* * *
19644427 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19644453 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19644479 G
1 G
19644480 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19644663 original size:25 final size:26
Alignment explanation
Indices: 19644612--19644663 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19644602 GTTGACTTAG
19644612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19644638 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19644663 G
1 G
19644664 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19645540 original size:26 final size:26
Alignment explanation
Indices: 19645511--19645563 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19645501 GTTGACTTAG
19645511 GCATACGA-AGTTCATTCCCAGTCTAA
1 GCATA-GAGAGTTCATTCCCAGTCTAA
*
19645537 GCATAGAGAGTTCATTCCGAGTCTAA
1 GCATAGAGAGTTCATTCCCAGTCTAA
19645563 G
1 G
19645564 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAGAGAGTTCATTCCCAGTCTAA
Found at i:19648128 original size:26 final size:26
Alignment explanation
Indices: 19648099--19648151 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19648089 CTTAGGATAC
19648099 GGAGTTCATTCCCAGTCGAAGCATAT
1 GGAGTTCATTCCCAGTCGAAGCATAT
19648125 GGAGTTCATTCCCAGTCGAAGCATAT
1 GGAGTTCATTCCCAGTCGAAGCATAT
19648151 G
1 G
19648152 ATCGAACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GGAGTTCATTCCCAGTCGAAGCATAT
Found at i:19649667 original size:4 final size:4
Alignment explanation
Indices: 19649658--19649687 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
19649648 CTGGCGTAGT
*
19649658 GCCC GCCC GCCC GCCC GCCC GCCG GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
19649688 TCGTTTCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.70, G:0.30, T:0.00
Consensus pattern (4 bp):
GCCC
Done.