Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 112 of 195
Found at i:19649902 original size:26 final size:26
Alignment explanation
Indices: 19649864--19649919 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19649854 TGGGTTGACA
* *
19649864 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTACCAATC
*
19649890 TAAGCATATGGAGTTCATTACCAATC
1 TAAGCATACGGAGTTCATTACCAATC
19649916 TAAG
1 TAAG
19649920 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTACCAATC
Found at i:19650904 original size:902 final size:902
Alignment explanation
Indices: 19648985--19653096 Score: 5866
Period size: 903 Copynumber: 4.6 Consensus size: 902
19648975 GTTGACTTAG
* *
19648985 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCT-GCACATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGG-TAGCACATGCTGG
* * * * ** **
19649049 GCTAGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAG
* *
19649114 AACCTGACCGGCAGCATTGGGGTTCCGACAATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
19649178 CAATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19649243 ACCCCGTTAAAGAGCATTTGAGATTTTACAAGATTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * * * * *
19649308 GACGACACTTTTTTCAAATGGTCACATAATCTTGTACACTTCGAGTTTGTAGTTGAAGTTTTTTG
325 GGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19649373 AGCATGCCAAAAAAAATAGAAGGGTCATGTCTACCAAGTTTGGGGCTAAAAATCCTTCCAAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
19649438 A-TTTAAAAAATCTCGAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTAGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTT
19649502 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
19649567 TTGGCACGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 TTGGCAC-ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19649631 GCATCCCGTCTCTCTAGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCCGGCCCGCTCGTTTCA
649 GCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCG--C-CC-GCCCGCTCGTTTCG
* * *
19649696 TCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGAT
706 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAT
* * * *
19649761 AGCAAGATCAGCAGCATGCAGAGGGGGACCAACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGG
771 AGCAAGATCGGCAGCACGCAGAGGGGGACCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
19649826 CTGGCTGAGCGCCTGCACGCTCATTTTGTGGGTTGACATAAGCATACGGAGTTCATTCCCAGTCT
836 CCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
19649891 AA
901 AA
* * ** *
19649893 GCATATGGAGTTCATTACCAATCTAAGATCGGACCGGACCGAGCATTGCGGTAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
19649958 CTCGGGCATGTGCTAGAGTCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
19650023 ACCTAACCAGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGTGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
19650088 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
19650153 CCCCTTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGTAGCTATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * * *
19650218 GCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGTTGAATTTTTTTGA
326 GGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19650283 GCATGCCAAAAAAAATAGAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCCTTCGAAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * *
19650348 TTTTAAAAAATCTCGTACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTAGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTG
*
19650413 CCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
19650478 TGGAACATAGAAATATGAAGATGTACCTAAACCCACCGACCACCCTATCGATCCATGGCTTGCGC
586 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
19650543 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCAG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGC
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
19650607 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTACGATAGCAAGATC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAAGATC
* *
19650672 GGCAGCACGCAGAGGGGGACCAGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
780 GGCAGCACGCAGAGGGGGACCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
19650737 TGCCCGCAAGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
845 CGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19650795 GCATACAGAGTTCATTCCCAATCTAAGATCGGGCCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * ** *
19650860 CTCGAGCATGTGCTGGTGTCACATTTTTCTTCATCGATGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
19650925 ACCTGACCGGCGGCATTGGTGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
19650990 CAATGGGTGCTGGTAATTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19651055 ACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19651120 GGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTTG
325 GGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
19651185 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCCAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** ** *
19651250 ATTTTAAAAAATCCCGAACTACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTAGTCTA
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTT
* * *
19651315 GCCATGAAACTTCACGTGAAGGCTGAACGGACCATTGAATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
19651380 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTGCG
585 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * *
19651445 CATCCCGTCTCTCTCACCGACGTAGT----GCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * * *
19651506 TTGGGCATACGGAGTTCATTCCCTGTCTGAGATCAGGCCAGACTGAGGGTTGTGGTAGTAAGATC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAAGATC
* ** * * *
19651571 GGCAGCACACAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGACCCTCTGGCCGACTGA
780 GGCAGCACGCAGAGGGGGA-CCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
19651636 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAA
844 GCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** *
19651695 GCATACGGAGGTCAATCCTAGTCTAAGATCAGATTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * *
19651760 CTCTGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCACCGCCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* **
19651825 ACCTGACCGGTGGCATTGGGGTTCC-A--A-C--A---ATCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
19651881 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19651946 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
19652011 GGGACACTTTATTCAAATGGACACAAAATCTTATACACTTCAAGTTTTTCGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
19652076 GCAAGCCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACACCTT-CGAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * *
19652140 TTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATGGAAAATGAGTCA-TCTT
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT-AGTCTT
* * * * *
19652204 GCCATGTAACTTCATGTGAAGGTTTAAGGGACCATTGTATGAACTAACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
19652269 TTGGCACACAAAAATATGAATATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
19652334 CATCCCGTCTCTCTGGTCGGCGTAATGCCTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
19652399 TTAGGCTTACGGAGTTCATTCCCGGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAAGATC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAAGATC
* * * * * * *
19652464 GACAGCATGCAGATGGGGACTAACTGATTCCCGGCTTGCGCATCCGGCCCCTCTGGCCGGCTGAG
780 GGCAGCACGCAGAGGGGGACCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
19652529 CGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 CGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19652587 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGC-ATAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
*
19652651 CTCGGGCATGTGCTGCTGTCGCATTTTTCTTCATCGGGGCACCAT---C---G--T---CGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
19652705 ACCTGA-CGACGGCATTGGGGTTCCGACGATCAGGA-GGG-CTGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGAGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
19652767 TGATTGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
19652832 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19652897 GGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTTG
325 GGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19652962 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-CAAAA
390 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
19653026 ATTTTAAAAAATCCCGAACTGTAAAAAGTTTTAAAAATCGTGAAGAATAGAAAACGAGTAGTCTA
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTT
19653091 GCCATG
520 GCCATG
19653097 CTCGTTTCGT
Statistics
Matches: 2867, Mismatches: 313, Indels: 69
0.88 0.10 0.02
Matches are distributed among these distances:
879 16 0.01
880 12 0.00
882 1 0.00
883 2 0.00
885 1 0.00
886 2 0.00
887 324 0.11
888 2 0.00
889 195 0.07
890 258 0.09
891 53 0.02
892 134 0.05
893 103 0.04
896 1 0.00
897 1 0.00
898 1 0.00
899 104 0.04
900 224 0.08
902 341 0.12
903 462 0.16
904 1 0.00
906 11 0.00
907 2 0.00
908 140 0.05
909 270 0.09
910 206 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAAGATCG
GCAGCACGCAGAGGGGGACCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19651719 original size:26 final size:26
Alignment explanation
Indices: 19651669--19651721 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19651659 GTTGACTTAG
* * *
19651669 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGGTCAATCCCAGTCTAA
*
19651695 GCATACGGAGGTCAATCCTAGTCTAA
1 GCATACGGAGGTCAATCCCAGTCTAA
19651721 G
1 G
19651722 ATCAGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCAATCCCAGTCTAA
Found at i:19652597 original size:26 final size:26
Alignment explanation
Indices: 19652561--19652613 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19652551 GTTGACTTAG
*
19652561 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19652587 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19652613 G
1 G
19652614 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19653942 original size:721 final size:711
Alignment explanation
Indices: 19652495--19654025 Score: 1750
Period size: 721 Copynumber: 2.1 Consensus size: 711
19652485 AACTGATTCC
* * * *
19652495 CGGCTTGCGCATCCGGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* * *
19652560 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGA
66 GGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAATCTAAGATCGGACCAGA
* * * * *
19652625 CCGAGGGTTGCATAGCACATCCTGGGCTCGGGCATGTGCTGCTGTCGCATTTTTCTTCATCGGGG
131 CCGAGGGTTGCACAGCACATCCTAGGCTCGGGCATGTGCTGCTGCCGCATTTTTCTTCACCGGGA
*
19652690 CACCATCGTCGGAGAACCTGACGACGGCATTGGGGTTCCGACGATCAGGAGGGCTGGGGGTGTGC
196 CACCATCGTCGGAGAACCTGACGACGGCATTGGGGTTCCGA-GA-CA-GAGGGC-GGGGGTGCGC
** *
19652755 GCACATGATGTGTGATTGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
257 GCACATGATGTGCAATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
19652820 TCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
322 CCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAA
19652885 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGC
387 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGC
*
19652950 TGAATTTTCTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
452 TGAATTTTCTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACT
** * * * * *
19653015 CCTTCCCAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTTAAAAATCGTGAAGAATAGAAAA
517 CCTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * ** * ** * ** * **
19653080 CGAGTAGTCTAGCCATGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCTATCTGA
582 CAAGTAGTCTAGCCACGAACGTTACGTA-GAAGGCTTAGGCATACGAAGTTCAAGCCATAAATGA
* *** * * ** * ***
19653145 GATCAGGCCCGACTGAGGGTTGTGACAGTTGGATCGACAGCACGCAAAGGGGGACCCGACCGATC
646 GATCAGGCACGAC-GAGAAATATGACAGATGGATCGACAAAACGCAAACGACCACCCGACCGATC
*
19653210 CC
710 CA
* * * * *
19653212 CGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTGTCGTGGGTTGACCTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* * * * * *
19653277 GGCATATGGAGTTGATTCGCATTCTAAGCATACGGAGCTCATTCCTAGTCTAAGATC-GATCAGA
66 GGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAATCTAAGATCGGACCAGA
* * * * *
19653341 CCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGG
131 CCGAGGGTTGC-ACAGCACATCCTAGGCTCGGGCATGTGCTGCTGCCGCATTTTTCTTCACCGGG
* **
19653406 ACACCACTGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-G-CA-ATTG-G
195 ACACCA-T--C---G--T---CGGAGAACCTGA-CGACGGCATTGGGGTTCCGAGACAGAGGGCG
* *
19653467 GGGGTGCGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
248 GGGGTGCGCGCACATGATGTGCAATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCT
**
19653532 CATCAAACCCCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTCGTAGGTTTGCTGCCAGT
313 CATCAAACCCCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGT
*
19653597 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
378 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGA
*
19653662 GTTTTTAGCTGAAATTTT-TTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
443 GTTTTTAGCTG-AATTTTCTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
19653726 GACCAAAACTCCTTCGAAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
507 GACCAAAACTCCTTC-AAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
* * * *
19653790 AAAATAGAAAATAAGTCGTCTTGCCACGAAAC-TTCACGT-GAAGGCTTAAGGGACCATTGTATG
571 AAAATAGAAAACAAGTAGTCTAGCCACG-AACGTT-ACGTAGAAGGCTT-A-GG--CA---TACG
* * *
19653853 AATTTACAAGCCATAAAAATG-GCAT-TGGCAC-AC-AGAAATATGA-AGAT-G-T-GCCAAAAC
627 AAGTT-CAAGCCAT--AAATGAG-ATCAGGCACGACGAGAAATATGACAGATGGATCGACAAAAC
* * * * *
19653910 -CCACCTACCACCCTATCGATCCA
688 GCAAACGACCACCCGACCGATCCA
* * * * * *
19653933 CGGCTTGCGCATCCCGTCTCTCTGGCCGAC-GTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTT
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGACTG-AGCGCCCGCACGCTCGTTTCATGGGTTGACTT
19653997 AGGCATATGGAGTTCATTCCCAGTCTAAG
65 AGGCATATGGAGTTCATTCCCAGTCTAAG
19654026 ATCGGACCAG
Statistics
Matches: 682, Mismatches: 103, Indels: 54
0.81 0.12 0.06
Matches are distributed among these distances:
716 16 0.02
717 156 0.23
718 1 0.00
720 8 0.01
721 402 0.59
722 26 0.04
723 4 0.01
724 3 0.00
725 6 0.01
726 6 0.01
727 7 0.01
728 19 0.03
729 23 0.03
730 5 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (711 bp):
CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
GGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAATCTAAGATCGGACCAGA
CCGAGGGTTGCACAGCACATCCTAGGCTCGGGCATGTGCTGCTGCCGCATTTTTCTTCACCGGGA
CACCATCGTCGGAGAACCTGACGACGGCATTGGGGTTCCGAGACAGAGGGCGGGGGTGCGCGCAC
ATGATGTGCAATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTCTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTT
CAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAG
TAGTCTAGCCACGAACGTTACGTAGAAGGCTTAGGCATACGAAGTTCAAGCCATAAATGAGATCA
GGCACGACGAGAAATATGACAGATGGATCGACAAAACGCAAACGACCACCCGACCGATCCA
Found at i:19654193 original size:26 final size:26
Alignment explanation
Indices: 19654157--19654209 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19654147 GTTGACTTAG
* *
19654157 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19654183 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19654209 G
1 G
19654210 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19655102 original size:26 final size:27
Alignment explanation
Indices: 19655049--19655102 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
19655039 GTTGAGTTAG
19655049 GCATACGAAGTTCATTCTCCAGTCTAA
1 GCATACGAAGTTCATTCTCCAGTCTAA
*
19655076 GCATACGGAGTTTCA-T-TCCAGTCTAA
1 GCATACGAAG-TTCATTCTCCAGTCTAA
19655102 G
1 G
19655103 ATCGACAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 11 0.44
27 10 0.40
28 4 0.16
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (27 bp):
GCATACGAAGTTCATTCTCCAGTCTAA
Found at i:19655984 original size:26 final size:26
Alignment explanation
Indices: 19655948--19656000 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19655938 GTTGACTTAG
19655948 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
19655974 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
19656000 G
1 G
19656001 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:19656516 original size:904 final size:900
Alignment explanation
Indices: 19653096--19660618 Score: 8989
Period size: 864 Copynumber: 8.5 Consensus size: 900
19653086 GTCTAGCCAT
* * * *
19653096 GCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTGAGATCAGG-CCCGACT
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATC-GGACCGGACC
* * ** * * * * *
19653159 GAGGGTTGTGACAGTTGGATCGACAGCACGCAAAGGGGGACCCGACCGATCCCCGACTTGCGCAT
64 AAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * * * *
19653224 CCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTGTCGTGGGTTGACCTAGGCATATGGAGT
129 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * * * * *
19653289 TGATTCGCATTCTAAGCATACGGAGCTCATTCCTAGTCTAAGATCGATCAGACCGAGGGTTGCGG
194 TCATTCCCAGTCTAAGCATACGGAGTTCATTCC-AGTCTAAGATCGAACGGACTGAGGGTTGCCG
* * * ** *
19653354 CAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGACACCA-CTGCCG
258 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GCCG
* * * *
19653418 GAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCAATTGGGGGGTGC--------G
322 GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-GCGGGGGGGTG
*
19653475 T--GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
386 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* ***
19653538 ACCCCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTCGTAGGTTTGCTGCCAGTAGCCAT
451 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
19653603 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
516 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
19653668 AGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGACCAA
581 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACT-TCTACCAAGTTTGGGGCCAA
* *
19653732 AACTCCTT-CGAAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
645 AACTCCTTCCG-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
** *
19653795 AGAAAATAAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
709 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
19653860 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTA
774 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
19653925 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G----T-GCCCG--C--CC
839 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGTCACTCGCCCGCCCGTCC
* * * * *
19653976 GCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
* * * * * *
19654041 GGGTTGTGGCAGCAGGATTGACAGCACGTAAAGGGGGACCAGCT-GATCCACGGCTTGCGCATCC
66 GGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * *
19654105 CGCTCCTCTAGCCAGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
131 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * *
19654170 ATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGACCGAGGGTTG-CGT
196 ATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGA-TCGAACGGACTGAGGGTTGCCGC
* * * * *
19654234 AGCACATCCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCACCGGA
259 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* * * * *
19654299 GCATCATCGGAGAACCTAACCGATGGCATTGGGGTTCTGACGATCGGGGGGGCCGAGGGGGTGTG
324 GCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTG
* * * * * *
19654364 CGCCCATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCTTGTCCCTCATGAAAC
388 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * * *
19654429 CTCAAGAGCTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGGCATTA
453 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
19654494 AAATGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
518 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
19654559 CTGAATTTTTTT-TCCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
583 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAAC
* * * *
19654623 TGCTTTCTCCAAAAAATTTTAAAAAATCAT-GAACCGTAAAAAGTTTCAAAAATTATGAAAAACA
648 T-CCTTC-CGAAAAAATTTTAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* * *
19654687 GAAAATGAGTCATCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
710 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
19654752 AGCCATAAAAATGGCACTGGCATGCAAAAATATGAAGATGTTGCTTAAACCCACCTACCACCCTA
775 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTA
* * *
19654817 TCGATCCAAAGGCTTGCGCTTCTCCGTCTCTCTGGCCGGCGTA-----A-T-----G--CG-CC
839 TCGATCC-ACGGCTTGCGCATC-CCGTCTCTCTGGCCGACGTAGTGTCACTCGCCCGCCCGTCC
* * * * * * * * *
19654867 GCTCGTTTCGTCAGTTAGCTGACGGTAT-TGTATAGTTCATTTCCAGTATACAGAATTGG-CCGG
1 GCTCGTTTCGTCGGTTGGCTTA-GGCATACG--GAGTTCATTCCCAGTCTA-AG-ATCGGACCGG
* * * * * * ** * * * *
19654930 A-C-AGGGTTGTAGTAGCATGATCGGTAGCATGCAGA-GGGGACAGGCT-GAT-CTC-GTTTTCG
61 ACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * ** * * *
19654989 CATCTTCGCCCGTCTGATCGGCTG-GCGCGACGCATGCCTCGTTTTCGTGGGTTGAGTTAGGCAT
126 CATC-CCGCCCCTCTGGCCGGCTGAGCGC-CCGCACG-CTCG-TTTCGTGGGTTGACTTAGGCAT
*
19655053 ACGAAGTTCATTCTCCAGTCTAAGCATACGGAGTTTCATTCCAGTCTAAGATCG-ACAGGAC-GA
187 ACGGAGTTCATTC-CCAGTCTAAGCATACGGAG-TTCATTCCAGTCTAAGATCGAAC-GGACTGA
*** * * ** **
19655116 GGGTTGCAAAAGCACATGCTGGGGCTCGAGCATGTGCTGGTG-CACATTTTTCTT-GTCGCTGTG
249 GGGTTGCCGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * * * * * *
19655179 CCATCGTCGGTGTATCGCTGGAGAACCTGACCGATGGCATTGGGGGTCCGGCGATCGGGGGGGCC
313 CCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCG
*
19655244 GGGGGGTGTGCGCACATGATGTGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTTATC
378 GGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
19655307 CCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
442 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
19655372 AGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTT
507 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
19655437 CGAGTTTTTAGCTGAATTTTTTTATGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTT
572 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTT
** * *
19655502 GGGTTCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACC-TCAAAAAGTTTCAAAAATCT
637 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCA
* * * *
19655566 TGAAAAATAGAAAACGAGTCATCTTACCTTGAAACTTAACGTGAAGGCTTAAGGGACCATTGTAT
701 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
19655631 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAA
766 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * * * * * *
19655696 CAACCCTATCTACCCACGACGTGCGCATCGCATCTCTTTGGCAGGCGAAGTGTTCACTCGCCCGC
831 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-TCACTCGCCCGC
*
19655761 CCGCCC
895 CCGTCC
* * *
19655767 GTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGGACCGGACCAA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
* * *
19655831 GGGTTGTGGCAGCAGGATCGGTAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCTCATCC
66 GGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * * *
19655896 TGCCCCTCTGGCCGGCTGAACGTCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTC
131 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
19655961 ATCCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGAACTGGACTAAGGGTTGCCGC
196 ATTCCCAGTCTAAGCATACGGAGTTCATTC-CAGTCTAAGATCGAAC-GGACTGAGGGTTGCCGC
* * * * * *
19656026 AGCACATACTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTTGTCGGGGCACCAACGTCGGA
259 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* * *
19656091 GCATCGCCGGAGAACCTGATCGACGGCATTGGGGTTCC-AGCAATCGGGGGGGCTGAGGGGGGGT
324 GCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGC---GGGGGGGT
* *
19656155 GTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCA
385 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
19656220 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
450 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
19656285 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTTGAGTTTT
515 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
19656350 TAGCTGAA-TTTTTTGTGCATGCCAACAAAAATA-AATGGATCACTTCTACCAAGTTTGGGACCA
580 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCACTTCTACCAAGTTTGGGGCCA
** * * *
19656413 AAACTCCTTTTGAAAAACTTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAAT
644 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
*
19656478 AGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
709 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
19656543 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
774 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * ** *
19656608 TCGATCCACGGCTTGCACATCCTGTCTCTCTGGCCGACGTAGTGCCTGTCCGCCCGCTCGTCC
839 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGTCACT-CGCCCGCCCGTCC
* * ** *
19656671 GCTCGTTTCGTCGGTTGGCTTAGCCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGAACCGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-A
* * * *
19656736 A-GGTTGTGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCC-AGCCGATCCCCGGCTTGCGCAT
65 AGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCAT
* *
19656799 CCTGCCCCTCTGGACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
129 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * *
19656864 TCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACTGGACTGAGGGTTACG
194 TCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGAAC-GGACTGAGGGTTGCC
* * * * * * * *
19656929 GTAGCACATGCTGGGTTTGGGCATGTGCTGGTGCCGTAATTTTCTTCGCCGAGGCACCATGGCCG
257 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
*
19656994 GAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGAT
322 GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGG-T
* *
19657059 GTGCGCACATGATGTGCGATGGGTGCTGG-ACTTGGCCCTTAATATTGG-CCCTTGTCCCTTCAT
385 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT-ATATTGGCCCCCTATCCC-TCAT
* * * *
19657122 TAAACC-CGAGAACTCCATACCCTCTT--AGAGCATTTGAGAATTTTATAGGTTTGCTGCCAGTA
448 CAAACCTCGAGAACT-CACACCCCCTTAAAGAGCATTTGAG-ATTTTACAGGTTTGCTGCCAGTA
* * *
19657184 GCCATTAAAGTGTCTGAAATTGCGGACA--TTTTTCAAAAGGTCACAAAATCTTGTACACTTCAA
511 GCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
19657247 GTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAGTACAAGGATCACGTCTGCCAAGTTTGGG
575 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGG
* * * *
19657312 GCCAAAACGCATTCCAAAAAAATTTTAAAAAATC-CTGAACCTTAAAAAGTTTCAAAAATCATGA
640 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGA
* *
19657376 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAA
704 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
19657441 TTTACAAGCCATAAAATTGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACTCACCTACCA
769 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * *
19657506 CCCTACCGATTCATGGCTTGCACATCCTGTCCCTCTGGCCGACGTAGTG-C-C-CGCCCGCCCGC
834 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGTCACTCGCCCGCCCGT
19657568 CC
899 CC
* * *
19657570 GCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCTGACCGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
* ** ** **
19657635 GGG-T-T---------A-CGGCAGCACGCAGAGGGGGACATGGCCGATCCCTAGCTTGCGCATCC
66 GGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * ** * *
19657688 CGCACCTCTGGCCGGCTGAGTGCCTGCACGCTCGTTTTATGGGTTAACTTAGGCATACGAAGTTC
131 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
19657753 ATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATCAGACCGGACCGAGGGTTG-TGA
196 ATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATC-GAACGGACTGAGGGTTGCCG-
* * * * *
19657817 CAGCACATGCTGGGCCCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGTACCATCGTCGG
258 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* *
19657882 AGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCAGA-GATC-GGGGGCCGGGGGGGGTG
323 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGGC-GGGGGGGTG
** *
19657945 TGCGCACATGATGTGCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCGA
386 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
19658010 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
451 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
19658075 TAAAGTGTTTGAAATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
516 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* **
19658139 AGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCA-TGTCTAAAAAGTTTGGGGCCAA
581 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACT-TCTACCAAGTTTGGGGCCAA
* * * *
19658203 AACTCCTTCC-AAAAAACCTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
645 AACTCCTTCCGAAAAAA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* * *
19658267 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGTAGGCTTAAGGGAACATTGTATGAATTTAC
709 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
19658332 AAGCCATAAAAATGTCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACACTA
774 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
19658397 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGT-TCCCGTCCGCCCGCCCGTCC
839 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGTCAC-T-CGCCCGCCCGTCC
* ** ** **
19658460 GCTTGTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTAGACCAA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
* * *
19658525 GGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CTGATCACCGGCTTGCACATC
66 GGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATC
* * * * * *
19658589 CCGGCCCTCTGG-CAGCTGAGTGTCCACACGCTAC-TTTCATGGGTTGACTTAGGCATACGGAGT
130 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
19658652 TCA----CAG-C--AG--T-C-----T-A----AGATC--AGAT----CGGACTAAGGGTTGCGG
194 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCAG-TCTAAGATCGAACGGACTGAGGGTTGCCG
* * **
19658691 CAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTTAGGGCACCAT---C--
258 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * *
19658751 -G--T---CGGAGAACTTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGT
323 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGT
* *
19658810 GCGCACAT-ATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAA
387 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
19658874 TCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
452 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
19658939 AAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAATTCTTGTACACTTCGAGTTTTTA
517 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * **
19659004 GCTAAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAA
582 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAA
* * *
19659069 CTCCTTCCGAAAAACTTTTAAAAAATCTCGAACC-TCAAAAAGTTTAAAAAATCATGAAAAATAA
647 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAG
* * *
19659133 AAAATGAGTCCTCTTGCCATGAAACTTCACGTGTAGGCTTAAGGGACCATTGTATGAATTTACAA
711 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* ** *
19659198 ACCATAAAAATGGCATTGGCTTGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
776 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
19659263 GATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTTTCCGCCCGTCCGCCCGTCC
841 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGT-CACTCGCCCGCCCGTCC
* * * *
19659324 GCTCGTTTCGTTGATTGGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGATCGGATCGGACCAA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
* * * * *
19659389 CGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC-AGTTGATCCCCAGCTTGCACATC
66 GGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATC
* ** * * *
19659453 CCACCCCTCTGGCCGGCTGAGCTTCCACACGCTCCTTTCGTGGGTTGACTTAGGCATACGAAGTT
130 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
19659518 CATTCTCAG--T---C-TA---AG--------A-TC--AGAT----CGGACTGAGGGTTGCAGCA
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAACGGACTGAGGGTTGCCGCA
* * *
19659559 GCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCAGAG
260 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
* *
19659624 CATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
325 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGC
* *
19659689 GCACAT-ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATC
389 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
19659753 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAA
454 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
19659818 AGTGTTTGAAAT-GGGACACTTTTTTCAAATGGTCATAAAATCTTATACACTTCGAGTTTTTAGC
519 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
19659882 TGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGTCCAAAAC
584 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAAC
* * *
19659946 TCCTTCCAAAAAAATTTAAAAAAATC-CTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGA
648 TCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
*
19660010 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAG
712 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
**
19660075 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCG
777 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
** * * * * *
19660139 ATCCACGGCTTGCGCATCCCGTCTCTCTGGGTGGCATAGTGCCCGCCCGCCCGCCCGTCC
842 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-TCACTCGCCCGCCCGTCC
* * * **
19660199 GCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
* * * * * * **
19660264 GGGTTGCGGCAGCAGGACCGACAGCACGTAGAAGGGGACCCGATCGATCCTC-GATTAATGCATC
66 GGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTT-GCGCATC
* * * *
19660328 CCGCCTCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTT
130 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
** * * *
19660393 CATTCCCAGTCTAAGCATACTTAGTTCATTCCCAGTCTAAGATCGGACCGGTCTGAGGGTT-ACG
195 CATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATC-GAACGGACTGAGGGTTGCCG
* * * * * ** * *
19660457 ACAGCACATACTGGGCTCAGGCATGTGCTAGTGTCGTATTTTTCTTCACCAGGGCACCATCGCCA
258 -CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
** * * * * * *
19660522 GAGCATCGTCGGAGAACCTGACAGGCGGCATTAGGGTTCCGACGATCGGGTGGCCAGGGGGGTGT
322 GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGT
*
19660587 GTGCACATGATGTGCGATGGGTGCTGGTACTT
387 GCGCACATGATGTGCGATGGGTGCTGGTACTT
19660619 TTTAGATGAA
Statistics
Matches: 5773, Mismatches: 668, Indels: 383
0.85 0.10 0.06
Matches are distributed among these distances:
862 2 0.00
863 163 0.03
864 473 0.08
865 54 0.01
866 81 0.01
868 3 0.00
869 4 0.00
871 1 0.00
872 1 0.00
874 67 0.01
875 238 0.04
876 262 0.05
877 192 0.03
878 1 0.00
879 212 0.04
880 112 0.02
881 4 0.00
884 4 0.00
885 81 0.01
886 387 0.07
887 283 0.05
888 198 0.03
889 359 0.06
890 202 0.03
891 241 0.04
892 119 0.02
893 77 0.01
894 36 0.01
895 9 0.00
896 12 0.00
897 20 0.00
898 71 0.01
899 142 0.02
900 72 0.01
901 264 0.05
902 115 0.02
903 343 0.06
904 420 0.07
905 443 0.08
906 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
GGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAACGGACTGAGGGTTGCCGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
ATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCC
TTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGTCACTCGCCCGCCCGTCC
Found at i:19656890 original size:26 final size:26
Alignment explanation
Indices: 19656853--19656905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19656843 GTTGACTTAG
* *
19656853 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
19656879 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
19656905 G
1 G
19656906 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:19657777 original size:26 final size:26
Alignment explanation
Indices: 19657740--19657792 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19657730 GTTAACTTAG
19657740 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19657766 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19657792 G
1 G
19657793 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19660410 original size:26 final size:26
Alignment explanation
Indices: 19660381--19660433 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19660371 GTTGACTTAG
*
19660381 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
19660407 GCATACTTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19660433 G
1 G
19660434 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19662026 original size:26 final size:26
Alignment explanation
Indices: 19661990--19662042 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19661980 GTTGACTTAG
19661990 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19662016 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19662042 G
1 G
19662043 GTCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19664044 original size:685 final size:693
Alignment explanation
Indices: 19662016--19664076 Score: 2501
Period size: 685 Copynumber: 2.9 Consensus size: 693
19662006 CCCAGTCTAA
* * * *
19662016 GCATATGGAGTTCATTCCCAGTCTAAGGTCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
19662081 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTTGCCTGGGAACCATCGCCAGAGCATCGTCGGACA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGC-TC-ACGGAGA
* * * *
19662146 ACCTGACCGATGGCATTGGGGTTCAGGCGATCGGGGGGGGCGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCTTTGGGGTTC---CG---GGGGGGCG-GGGGGGTGTGTGCACATGATGTGC
* * *
19662211 AATGGGTACTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * **
19662276 CCCCTTAAAGAGCACTTAAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
252 CCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAATGG
* * * * *
19662341 GAACACTTTTTTCGAATGGTCACAACATCTTGTACCACTTCGAGTTTTTTACCTTGATTTTTTTT
317 GGACACTTTTTTCAAATGGTCACAAAATCTTGTA-CACTTCGAG-TTTTTA-GTTGAATTTTTTT
* * * *
19662406 GTGCATGCCAAAAAGTACAAGGATGCATGTCTACCATGATTTGGGGCCAAAACTCCTTCC-AAAA
379 GTGCATGCAAAAAAATACAAGGAT-CACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
19662470 AATTTT-AAAAATCCCGAAACCGCAAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCCA
442 AATTTTAAAAAATCCC-AAACCTC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT-CG
*
19662534 TCTTGCCATAGATAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAA
504 TCTTGCCAT-GA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
19662599 AAGGCATTGGCATGCCCAAAAATATAAGAAAATGTGCTTAAA-CCACCTATCGCACCTCTATCTT
567 ATGGCATTGGCATG--CAGAAATAT--GAAGATGTGCCTAAACCCACCTA-C-CACC-CTATC-G
19662663 ATCCACGGGCTGGGCTACATCCCATCTCTCTGGCCAGCGTAGTGCTCGCCCGCCTGCCCCGATCG
624 ATCCAC-GGCT----TACAT--CATCTCTC-GG-C-GCGTAGTGCT----CG-C-G-CCCGATCG
* *
19662728 CTCGTTTCGTCGGTTGGCTTAC
672 CTCATTTCGTCAGTTGGCTTAC
* * * *
19662750 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATTATACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
19662815 CTCGGGCATGTGCTGGTGTCGCA-TTTTCTTCGTAGGGGCACCATCGCCGGAGCACGACGAAGAA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCTC-ACGGAGAA
*
19662879 CCTGACCGACGG-TATTGGGGTTCCGGCAATAGGGGGCCGGGGGGTGTGCT-CACATGATGTGCG
130 CCTGACCGACGGCT-TTGGGGTTCCGG-----GGGGGCGGGGGGGTGTG-TGCACATGATGTGCG
* * * *
19662942 ATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCATAC
188 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
** * * *
19663007 CCCTTAAAGAGCATTCCAGATTTTACAGGTATGCTCCCAGTAGCCATTAAAATGTC-TGAAATGG
253 CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTG-AATGG
* *
19663071 GGATACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTG-ATTTTTTTGTG
317 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTG
*
19663135 CATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
382 CATG-CAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
19663200 TTTAAAAAATCTCGAATCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
445 TTTAAAAAATC-CCAAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
19663264 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
509 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19663329 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGT
574 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACAT
* *
19663394 -ATC-C-C-G-TC-T-GT-CT-G-G-CCG-TCGCTCATTTCGTCAGTTGGCTTAG
639 CATCTCTCGGCGCGTAGTGCTCGCGCCCGATCGCTCATTTCGTCAGTTGGCTTAC
*
19663437 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19663502 CTCGGGCATGTGCCGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCTTCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGC-TCA-CGGAGA
* * * * * *
19663567 ACCTGACCGGCGGCTTTGGAGTT-CGGGGGGTCGGGGGGGTGAGTGCACTTGATGCGCGATGGGT
129 ACCTGACCGACGGCTTTGGGGTTCCGGGGGGGCGGGGGGGTGTGTGCACATGATGTGCGATGGGT
* * * * *
19663631 GCTGGCACTTGACCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACGGCCCCTC
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCTT
* * *
19663696 GAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAATGGGGACGC
258 AAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAATGGGGACAC
* * * *
19663761 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGGTGAATTTCTTTGTGCATGTG
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATG-C
* *
19663826 AAAAGAAATACACGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAA
387 AAAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
19663891 AAATCCCAAACCTCAAAAAGTTTCAAAAATTATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAA
451 AAATCCCAAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
19663956 ACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATG
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
19664021 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
581 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
19664077 GCATCCTGTC
Statistics
Matches: 1175, Mismatches: 128, Indels: 97
0.84 0.09 0.07
Matches are distributed among these distances:
682 1 0.00
683 81 0.07
684 110 0.09
685 247 0.21
687 101 0.09
688 35 0.03
689 25 0.02
690 2 0.00
693 1 0.00
698 2 0.00
699 2 0.00
700 1 0.00
701 1 0.00
704 1 0.00
706 1 0.00
707 1 0.00
708 3 0.00
711 3 0.00
715 4 0.00
716 6 0.01
717 5 0.00
718 4 0.00
719 14 0.01
720 7 0.01
721 8 0.01
723 64 0.05
724 2 0.00
725 10 0.01
726 70 0.06
727 25 0.02
728 29 0.02
729 12 0.01
730 164 0.14
731 5 0.00
732 27 0.02
733 24 0.02
734 77 0.07
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (693 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCTCACGGAGAAC
CTGACCGACGGCTTTGGGGTTCCGGGGGGGCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAA
GAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCAAAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCAAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACATCATCTCTCGGCG
CGTAGTGCTCGCGCCCGATCGCTCATTTCGTCAGTTGGCTTAC
Found at i:19665607 original size:679 final size:679
Alignment explanation
Indices: 19664421--19665715 Score: 1896
Period size: 679 Copynumber: 1.9 Consensus size: 679
19664411 CGGACGACAC
* * * *
19664421 TGGGTTCCTACGATCTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
1 TGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCT
* *
19664486 GGCCATTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
66 AGCCATTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* *
19664551 TGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGGGTCTGAAATGGGGACACTTTTTTCAAA
131 TGAGATTTTACAAGTTTGCTACCAGTAGCCAATAAAGGGTCTGAAATGGGGACACTTTTTTCAAA
* * *
19664616 TTGTCACAAAATCTTGTACCCTTCGTGTTTTTAGCTGAATTTTTAGTACAATGCCAAGAAAAATA
196 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTAGTACAATGCCAAGAAAAATA
* *
19664681 CAAGGATCACGTCTACGCACGTTTGGGGCCCAAAACCTTCTTCCAAAAAAATTTTATAAAAATCC
261 CAAGGATCACGTCTACGCACGTTTGGGGCCCAAAACCTCCATCCAAAAAAATTTTATAAAAATCC
* * * * *
19664746 GAACCGTCAAAAGTTTCGAGAATCGTGAAAAATAGAAAAATGAGTAATCTTGCCATGAAACTTCA
326 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAACGAGTAATCTTGCCATGAAACTTCA
* * *
19664811 CGTAAAGGCTTAGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGTGCACAGAAAT
391 CGTAAAGGCTTAAGGACCATTATATGAATTTACAAGCCATAAAAAATGGCATTGAGCACAGAAAT
* *
19664876 ATGTAGATGTCCTACCCACCTACCACCCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-
456 ATGAAGATGTCCTACCCACCTACCACCCATATCGATCCACGACTTGCGCATCCCGTCTCTCTGGC
* * * * *
19664940 CTGACGTA-TGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTACCTTAGACATACGGAGTTCTTT
521 CAG-CGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTACCTTAGACATACGAAGTTCATT
* *
19665004 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGCCGG
585 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGCCGG
19665069 ACCATTGCCGAAGAACCTGACCGACGGTAT
650 ACCATTGCCGAAGAACCTGACCGACGGTAT
19665099 TGGGTTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACC
1 TGGG-TTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACC
* *
19665164 TAGCCCTTATATTGG-CCCCTTATCCCTCATCAAAACCTCAAGAACTCACCACCCTCTTAAAGAG
65 TAGCCATTATATTGGTCCCC-TATCCCTCATC-AAACCTCAAGAACTCA-CACCCCCTTAAAGAG
* * *
19665228 CATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTATAGTGTCTGAAATGGGGACACTTTTTT
127 CATTTGAGATTTTACAAGTTTGCTACCAGTAGCCAATAAAGGGTCTGAAATGGGGACACTTTTTT
* * * **
19665293 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGC-ATGTGAA-AA
192 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTAGTACAATGCCAAGAA
*
19665356 AAATACAAGGATCACGTCTAC-CATGTTTGGGG-CCAAAA-CTCCATCCAAAAAAATTTTA-AAA
256 AAATACAAGGATCACGTCTACGCACGTTTGGGGCCCAAAACCTCCATCCAAAAAAATTTTATAAA
**
19665417 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGTCGTCTTGCCATGAA
321 AAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAACGAGTAATCTTGCCATGAA
*
19665481 ACTTCACGTGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCAT-AAAAATGGCATT-AGCA
385 ACTTCACGTAAAGGCTT-AAGGACCATTATATGAATTTACAAGCCATAAAAAATGGCATTGAGCA
* *
19665544 TGCAGAAATATGAAGATGTGCCTAAACCCACCTATCAGCC-TATCGATCCACGACTTGCGCATCC
449 --CAGAAATATGAAGATGT-CCT--ACCCACCTACCACCCATATCGATCCACGACTTGCGCATCC
** ** *
19665608 CGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATA
509 CGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTACCTTAGACATA
* * *
19665673 TGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGATGGTTG
574 CGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
19665716 TGGTAGTAGG
Statistics
Matches: 549, Mismatches: 54, Indels: 26
0.87 0.09 0.04
Matches are distributed among these distances:
675 3 0.01
676 54 0.10
677 94 0.17
678 17 0.03
679 128 0.23
680 127 0.23
681 120 0.22
682 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (679 bp):
TGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCT
AGCCATTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAAGTTTGCTACCAGTAGCCAATAAAGGGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTAGTACAATGCCAAGAAAAATA
CAAGGATCACGTCTACGCACGTTTGGGGCCCAAAACCTCCATCCAAAAAAATTTTATAAAAATCC
GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAACGAGTAATCTTGCCATGAAACTTCA
CGTAAAGGCTTAAGGACCATTATATGAATTTACAAGCCATAAAAAATGGCATTGAGCACAGAAAT
ATGAAGATGTCCTACCCACCTACCACCCATATCGATCCACGACTTGCGCATCCCGTCTCTCTGGC
CAGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTACCTTAGACATACGAAGTTCATTC
CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGCCGGA
CCATTGCCGAAGAACCTGACCGACGGTAT
Found at i:19665856 original size:25 final size:26
Alignment explanation
Indices: 19665828--19665877 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
19665818 TTGACTTAGG
* *
19665828 CATACGGAGTTCATT-CTAGTCTAAA
1 CATACGAAGTTCATTCCCAGTCTAAA
19665853 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
19665878 GATCAGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:19666024 original size:183 final size:183
Alignment explanation
Indices: 19665669--19666026 Score: 456
Period size: 183 Copynumber: 2.0 Consensus size: 183
19665659 TTGGCTTAGG
* * * * * * *
19665669 CATATGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGATGGTTGTGGTAGTAGGATCGACAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAG
* * * * * *
19665734 CATGCAGAGGGGGAACCGACCGATCCTCGGCTTACGCATCCCGCCACTCTGGCTGGCTGGGCATC
66 CATACAGAGGGGGAACCGACCAATCCTCGACTTACGCATCCCGCCACTCTAGCCGACT-GGCATC
19665799 CGCACACTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTAGTCTAAA
130 CGCACACTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTAGTCTAAA
*
19665853 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAG
* * *
19665918 CATATAGAGGGGG-ACCGACTAATCC-CTGACTTACGCATCCCGCC-CTTTTAGCCGACT-G-AT
66 CATACAGAGGGGGAACCGACCAATCCTC-GACTTACGCATCCCGCCAC-TCTAGCCGACTGGCA-
* *
19665978 TGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
128 T-CC-GCACACTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
19666027 CCAGTGTAAG
Statistics
Matches: 150, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
180 1 0.01
181 2 0.01
182 4 0.03
183 75 0.50
184 68 0.45
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (183 bp):
CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAG
CATACAGAGGGGGAACCGACCAATCCTCGACTTACGCATCCCGCCACTCTAGCCGACTGGCATCC
GCACACTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTAGTCTAAA
Found at i:19666908 original size:26 final size:26
Alignment explanation
Indices: 19666879--19666931 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19666869 GTTGACTTAG
19666879 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19666905 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19666931 G
1 G
19666932 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19669463 original size:878 final size:875
Alignment explanation
Indices: 19667243--19669650 Score: 2997
Period size: 896 Copynumber: 2.7 Consensus size: 875
19667233 ACCATCGTCG
* * *
19667243 GAGAACGTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGATGTGCACACATGA
1 GAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGAGGGGGCCGGGGGG-TGTGCGCACA--A
* * * *
19667308 TATGC-GATGGGTGCTGGTCCTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
62 GATGCTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
19667372 CTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTAT
127 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
19667437 GAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACAGTTCGACTTTTTAGCTGAATTT
192 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT
* * ** *
19667502 TTTTTTTGCATGCCAACAAAATTACAAGGATCACATCTAAGAAGTTTGGGGCCAAAACTCCTTCC
256 TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCT
* **
19667567 AAAAAAATTAAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
321 GAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
19667632 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTCCAAGCCATAAAA
386 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * * *
19667697 ATGGCATTGGCACACAGAAATATGAAGAAGTGCCTCAACCCATCTACCACCCTATCGATCCACGG
451 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
19667762 CTTGCGCATCCCGTCTCTCTGGCCTGCATAGAGCCTGCCCGCCCGCCCGTCCGCTCGTTTCGTCA
516 CTTGCGCATCCCGTCTCTCTGG-CTGCGTAG-GCCCGCCCGCCCG--CGCCCGCTCGTTTCGTCG
** * * * * *
19667827 GTTGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATTGGACAGGATCAAGGATTGTGGCAGT
577 GTTGGCTTAGGCATA-AGAGTTCA-TTCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGG
* * * * * * *
19667892 AGGATCGGCAGCACGTATAGGGGAACTCGATCGATCCTCGACTTGCGCATCTCGCCCCTCTGGCC
640 AGGATCGACAGCACGCAGAGGGGAACCCAACCAATCCTCGACTTGCGCATCTCGCCCCTCTGGCC
* *
19667957 TACTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCGAA
705 GACTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCACTCCAAGTC---
* * * *
19668022 AAATACGGTGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAGCACATGCTGGG
767 --ATA----G---A----CAATC-AAGACCGGA--AGA-CGAGGGTTGCAGCAGCACATGCTGGG
* * * * *
19668087 CTTGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACTATCATCGGAGCATCGTCG
815 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTAACCGGGGCACCATCATCGGAGCATCGCCA
* * * ** * *
19668148 GACAACCTGAACGACAGCATTGGGGTTCCG-G-T-GA-TCGG--GGGGGGTGCGCGCACATGATG
1 GAGAACCTGACCGACGGCATTGGGGTTCCGCGATCGAGGGGGCCGGGGGGTGTGCGCACAAGATG
* * * * *
19668207 -TGCGATAGGTGCTGGTTCTTGGCCCCTATACTGGCCCCCTGTCCCTCATCAAACCTCGAGAACT
66 CTG-G-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
19668271 CACACCCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
129 CACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
19668336 AAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTCAA-TTT
193 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
19668400 TTTGTGCATCCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
258 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
** * * *
19668465 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAAAAAATGAGTCG
323 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
19668530 TCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGATTTTACAAGCCATAAAAAT
388 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
19668595 GGCTTTGGCATGCAGAAATAAGAAGATGTGTCTAAACCCACCTACAACCCTATTGATCCACGGCT
453 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
19668660 TGCGCATCCTGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTTGCCCGCTCATTTCGTCGGT
518 TGCGCATCCCGTCTCTCTGGCTG-CGTAG-GCCCGCCCGCCCGC--GCCCGCTCGTTTCGTCGGT
* * *
19668725 TGGCTTACGCATAATGAGTTCATTCGCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGTAGGAG
579 TGGCTTAGGCATAA-GAGTTCATTC-CAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGGAG
*
19668790 GATCGACAGCACGCAGAGTGGG-ACCCAACCAATCCTCGACTTGTGCATCTCGCCCCTCTGGCCG
642 GATCGACAGCACGCAGAG-GGGAACCCAACCAATCCTCGACTTGCGCATCTCGCCCCTCTGGCCG
* * * * *
19668854 GCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTC-TA-
706 ACTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCACTCCAAGTCATAG
* *
19668917 A-AATC-AGACCGG-AG-CGAGGGTTGCAGCAGCACATGCTGTGCTCGGGCATGTGCTGGTGCCG
771 ACAATCAAGACCGGAAGACGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG
* * * *
19668978 TATTTTTCTTAACTGGGGCACCATCGTCGGAGCATTGCCA
836 CATTTTTCTTAACCGGGGCACCATCATCGGAGCATCGCCA
*
19669018 GAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACAAGA
1 GAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGAGGGGGCC-GGGGGGTGTGCGCACAAGA
19669083 TGCTTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
64 TGC-TGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
19669148 TCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTT
128 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
19669213 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTT
193 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *** * * *
19669278 TTTGTGCATGCGAACAAAAATACAGGGATCAGGCCTACCAAGTTTGGGACCGAAACTCGTTCTGA
258 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * * * *
19669343 AAAAATTTTGAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCG
323 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * **
19669408 TCTTGCCATGAAACTTAACGTGAAGGTTTAAGGGACTTTTGTATGAATTTACAAGCCATAAAAAT
388 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19669473 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGCTCCACGGCT
453 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
19669538 TGCGCAGCCCGTCTCTC-GGCCGGCGTA---ACGCCTG-CC-CGCCCGCTCGTTTCGTCGGTTGG
518 TGCGCATCCCGTCTCTCTGG-CTGCGTAGGCCCGCCCGCCCGCGCCCGCTCGTTTCGTCGGTTGG
* * * *
19669597 CTTAGGCTTACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGC
582 CTTAGGCATA-AGAGTTCATT-CCAGTCTAAGATCAGACCGGATCGAGGGTTGC
19669651 AATAGCACAT
Statistics
Matches: 1306, Mismatches: 173, Indels: 84
0.84 0.11 0.05
Matches are distributed among these distances:
869 66 0.05
870 101 0.08
871 1 0.00
872 5 0.00
873 6 0.00
874 2 0.00
875 8 0.01
877 121 0.09
878 323 0.25
879 1 0.00
880 2 0.00
882 1 0.00
890 2 0.00
894 1 0.00
895 11 0.01
896 440 0.34
897 68 0.05
898 116 0.09
900 2 0.00
901 1 0.00
902 1 0.00
903 1 0.00
904 1 0.00
905 25 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
GAGAACCTGACCGACGGCATTGGGGTTCCGCGATCGAGGGGGCCGGGGGGTGTGCGCACAAGATG
CTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCTGCGTAGGCCCGCCCGCCCGCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATAAGAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGGAGGATCGACAG
CACGCAGAGGGGAACCCAACCAATCCTCGACTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCC
CGCACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCACTCCAAGTCATAGACAATCAAGA
CCGGAAGACGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTT
AACCGGGGCACCATCATCGGAGCATCGCCA
Found at i:19670508 original size:26 final size:26
Alignment explanation
Indices: 19670472--19670524 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19670462 GTTGACTTAG
*
19670472 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
* *
19670498 GCATATGGAGTTCATTTCGAGTCTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
19670524 G
1 G
19670525 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCGAGTCTAA
Found at i:19671410 original size:26 final size:26
Alignment explanation
Indices: 19671372--19671424 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19671362 GTTGACTTAG
19671372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19671398 GCATA-GGAGGTTCATTCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
19671424 G
1 G
19671425 GTCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19671852 original size:898 final size:896
Alignment explanation
Indices: 19669605--19673054 Score: 4887
Period size: 894 Copynumber: 3.8 Consensus size: 896
19669595 GGCTTAGGCT
* * * ***
19669605 TACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCAATAGCACA---T--GCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * *
19669665 AGCCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCACCGGAGAACC
66 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * *
19669730 TAACCGACGGCATTGGGGTTCTGACGATCGAGGGGGCCGGGGGGTGTGCGCACGTGATGTGCGAT
131 TGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
19669795 GGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * * *
19669860 CTTTAAAGAGCATTTAAGATTTTACAGGTTTGCAGCCAGTAGCCGTTAAAGTGTTTGACATGGGG
261 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
19669925 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATATTTTT-ATGC
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGA-GC
* * * * * *
19669989 AAGCCAAAAAAAATACAAGGATCACG--TACCAAGTTTGGGGCCAAAAATCCTTCCGAAACAATT
390 ATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATT
* * * *
19670052 TTAAAAAATCTCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
455 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCC
*
19670117 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
19670182 GCACGCAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
585 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
19670247 CCCGTCTCTCTGGGCGGCGTAGTGCCCGCACGCTAGCCTACCCGCTCATTTCGTCAGTTGGCTTA
650 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC---CCT--CCGCTCGTTTCGTCGGTTGGCTTA
* * * *
19670312 GGCATACGGAGTTCATTGCCAGTCTAAGATTGGATCAGACCGAGGGATGCGGTAGTAGGATCGGC
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGATGCGGTAGTAGGATCGGC
* * * *
19670377 AGAAAGCAGAAGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAACG
775 AGCACGCAGAAGGGGACC-GGCCGATCCCCGACTTGCGCATCCTGCCCCTCTGAC-GGCTGAACG
* ** * * *
19670442 CCCGCACTTTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
838 CCAGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
19670501 TATGGAGTTCATTTCGAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTTGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * *** * *
19670566 GGG-ATGTGTTGGTGCCACATTTTTCTTTACCGGGGCACCATCGTTGGAGCATCGTCGGAGAACC
66 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* *
19670630 TGATCGACGGCATTGGGGTT-TCGACGATCGGGGGGGCCGCGGGGGGTGTGC-CTACATAATGTG
131 TGACCGACGGCATTGGGGTTCT-GACGATCGGGGGGG-C-CGGGGGGTGTGCGC-ACATGATGTG
*
19670693 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** *
19670758 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCACGAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19670823 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19670888 TGCATGCCAA-AAAACATACAGGGATCATGTTTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAA
387 AGCATGCCAATAAAA-ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAA
* *
19670952 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
* *
19671017 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCAAAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19671082 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19671147 GCATCCCGTCTCTCTAGCCGACGTAGTTCCCGCCCGCCCGTCTGCTCGTTTTGTCGGTTGGCTTA
646 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-TCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
19671212 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGCTGCAGTAGTAGGAGCAGC
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGATGCGGTAGTAGGATCGGC
* * ** *
19671277 AGCACGCAGAGGGGGACTCGGCCCATCCTTGGA-TTGCGCATCCTGCCCCTCTAGACGGCTGAGC
775 AGCACGCAGAAGGGGAC-CGGCCGATCC-CCGACTTGCGCATCCTGCCCCTCT-GACGGCTGAAC
*
19671341 GCCTGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
837 GCCAGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
*
19671401 TA-GGAGGTTCATTCCCAGTCTAAGGTCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 TACGGA-GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
19671465 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCGCCGGAGAAC
65 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
*
19671529 CTGACCGACGGCTTTGGGGTT-TCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
130 CTGACCGACGGCATTGGGGTTCT-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
19671593 AAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACGC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
19671658 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19671723 GAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGAG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAG
* * *
19671788 CATGCCAATAAAAATACAAGGATCATGTCTACCGAGTTTGGGGCCAAAACCCCATCCAAAAAAAT
389 CATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAAT
* * **
19671853 TTTAAAAAATTCCGAACCGCAAAAATTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGC
454 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGC
* * *
19671918 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGATGCCATAAAAATGGCTTT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
19671983 GGAATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
584 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
19672048 TCTCGTCTCTGTGGCCGACGTAGTGCCCACCCG--C-CCGCTAGTTTCGTCCGTTGGCTTAGGCA
649 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
19672110 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCGGCAGTAGGATCGGCAGCA
714 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGATGCGGTAGTAGGATCGGCAGCA
* * ** * * * *
19672175 CGTAGATGGGGACCCGGTTGATCCCCGACTTGCGCATCTTGCGCCTCTGGTCGGCTGAACGCCAA
779 CGCAGAAGGGGA-CCGGCCGATCCCCGACTTGCGCATCCTGCCCCTCT-GACGGCTGAACGCCAG
* * *
19672240 CACGCTCGTTTCT-TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTGTAAGCA
842 CACACTCGTTT-TGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
19672295 TACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCATCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
*
19672360 GGGCATGTGCTGGTGCCGCA-TTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGTCGGAGAAC
66 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAAC
* * * *
19672423 CTGACCTG-CAGCATTGGGGTTCTGGCGATCGGGGGGTCCGGGGGGGTGTGCGCACAAGATGTGC
130 CTGACC-GACGGCATTGGGGTTCTGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* *
19672487 GATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19672552 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19672616 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGG
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGA
* * ** *
19672681 GCATGCCAATAAAAATAAAAAGATCATGTCTAAAAAGTTTAGGGCCAAAACTCCATCCGAAAAAA
388 GCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAA
* *
19672746 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTG
453 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
19672811 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
19672876 TGGCACGCAGAAATATGAAGATGTGCCTAAACCTACCTAGCACTCTATCGATCCATGGCTTGCGA
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
19672941 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCATCCGTTCGTTTCATCGGTTGGTTTAGG
648 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-TCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
19673006 CATATGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
712 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGATGCG
19673055 ACAGCACATG
Statistics
Matches: 2280, Mismatches: 240, Indels: 66
0.88 0.09 0.03
Matches are distributed among these distances:
893 14 0.01
894 699 0.31
895 90 0.04
896 48 0.02
898 529 0.23
899 11 0.00
900 379 0.17
901 41 0.02
902 221 0.10
904 248 0.11
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
TGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCA
TGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGATGCGGTAGTAGGATCGGCAGCACG
CAGAAGGGGACCGGCCGATCCCCGACTTGCGCATCCTGCCCCTCTGACGGCTGAACGCCAGCACA
CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19672302 original size:26 final size:26
Alignment explanation
Indices: 19672266--19672318 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19672256 GTTGACTTAG
*
19672266 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19672292 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19672318 G
1 G
19672319 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19673904 original size:25 final size:26
Alignment explanation
Indices: 19673866--19673915 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
19673856 TTGACATAGG
19673866 CATACGGAGCTCATTCCCAGTCTAAC
1 CATACGGAGCTCATTCCCAGTCTAAC
*
19673892 CATA-GGAGTTCATTCCCAGTCTAA
1 CATACGGAGCTCATTCCCAGTCTAA
19673916 GAATGGAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (26 bp):
CATACGGAGCTCATTCCCAGTCTAAC
Found at i:19674791 original size:26 final size:26
Alignment explanation
Indices: 19674760--19674809 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19674750 GACTTAGGCG
19674760 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
19674786 TACGGAGTTCATTTCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19674810 ATCCATCCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19675421 original size:888 final size:889
Alignment explanation
Indices: 19673013--19677231 Score: 5428
Period size: 888 Copynumber: 4.8 Consensus size: 889
19673003 AGGCATATGA
** * * * *
19673013 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGACTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
** *
19673078 TGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCAT---C---G-----CCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACC
* * *
19673132 GACGGCATT-GGCGTTCCGGTGATCGGGGGGGTCGAGGGGGGGTTTGCGCACATGATGTGTGATT
131 GGCGGCATTAGG-GTTCCGGTGATCGGGGGGG-C--GGGGGGGTGTGCGCACATGATGTGTGATG
* ** *
19673196 GGTGCTGGTACTTGGCCCCTATATTATCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
19673261 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
* *
19673326 CACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCAT
* * *
19673391 ACCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
386 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
19673456 AAAAAATCCTGAACCTCAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAAGGAGTCATCTTGCCA
451 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCATCTTGCCA
* *
19673520 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
19673585 CACACA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATC
580 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
19673649 CCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGG
645 CCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATACGG
* ** * * * * *
19673714 AGTTCATTCCGAGTCTAAGATTGGACCGGATCGAGGGTTACGATAGCAGGACCGACAGCATGCAA
706 AGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
** * * * * **
19673779 AGGGGGACCCGGTCGATCCCCAGCATGCGCATGCCGCCCCTCTGGCCGGCTGAGCGCCCATACGC
771 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CTGCTGAGCGCCCGCACGC
* *
19673844 TCGTTTCGTGGGTTGACATAGGCATACGGAGCTCATTCCCAGTCTAACCATA-GG
835 TCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ** * **
19673898 AGTTCATTCCCAGTCTAAGAAT-GGAACA-AATAGAGGGTTGTGGTGGCACATGCTGGGCTCGGG
1 AGTTCATTCCCAGTCTAAG-ATCGGACCAGACCA-AGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * ** * *
19673961 CATGTGCTGGTGCCCCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
64 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAGAACCTGA
* ** * *
19674026 CCGGCGGCATTAGTGTTCCGACGATC-GGGGGGCGATGGGGCGGTGTACGCACATGATGTGCGAT
129 CCGGCGGCATTAGGGTTCCGGTGATCGGGGGGGCG--GGGG-GGTGTGCGCACATGATGTGTGAT
*
19674090 GGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCC
191 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
19674155 CCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAACTGTTTGAAACGGGG
256 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
*
19674220 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTATTTTGTGCA
321 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCA
*
19674285 TGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
385 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
*
19674350 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
450 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
* * * *
19674415 TGAAACTTCATGTGAAGGCTTAAGGGACTATTGTATGAATTTAGAAGCCATAAAAATGGCTTTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
19674480 CATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGTGCATC
580 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
19674545 CCGTCTCTCTGGCCGGCTTAATGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTT
645 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * *
19674610 TATTCCTAGTCTAAGATCAGACCAGATTGAGGGTTAC-AGTAGCAGGATCGACAGCACGTAGATG
710 CATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTACGA-CAGCAGGATCGACAGCACGCAGAGG
* * *
19674674 GGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCTGACTGGGCGCCCGTACGCTCG
774 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTG-CTGAGCGCCCGCACGCTCG
*** * *
19674739 TTTTACGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGG
838 TTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * *
19674791 AGTTCATTTCCAGTCTAAGATC-CATCCAGACCAAGGGTTGTGGTAGCAGATGCTGAGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGA-CCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * * * *
19674855 ATGTGGTGGTGCTGCATTTTTCTTTGTCGGGGCACAATCACCGGAGAATCATCGGAGAACATGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAGAACCTGAC
* * * * * * *
19674920 TGGCGGCATTAGGGTTTCGGTGATTGGGGGGGCCGGGTGGTGTGCACACATGGTGTGTGATGGGT
130 CGGCGGCATTAGGGTTCCGGTGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGTGATGGGT
* * *
19674985 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCG-CAACTCACACCCCTTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
19675049 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCGGTAGCCATTAAAGTGTCTAAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
* *
19675114 TTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTCCATGCCA
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCA
* *
19675179 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAGAA
390 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* *
19675244 AAT-CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
455 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
*
19675308 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAATGGCATTGGCACAC
520 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * *
19675373 AGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGTGCTTCCCGTC
585 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
19675438 TCTCTGGTCGGCGTAGTGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
650 TCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** * * * **
19675503 CCAGTCTAAGATCAGACCGGATTGAGGGTTGTGGCAGTAGGATC-AGCAACACATAGAGGGGGAC
715 CTAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGATCGA-CAGCACGCAGAGGGGGAC
* * * * *
19675567 CTGGCCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCTGCTGAGCGCCTGCACGCTCGTTTCG
779 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CTGCTGAGCGCCCGCACGCTCGTTTCG
19675632 TGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
843 TGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
19675679 AGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAAATGTTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * * * *
19675744 TGTGCTGGTGCCACATATTTCTTC-ACTGGGGCACCATCGCCAGAGTACCGCCGGAGAACCTGAT
66 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCACCAGAGCATCACCGGAGAACCTGAC
* * *** * * *
19675808 CGACGACATT-GGGTTCCGACAATCGAGGGGGTCGGGGTGGGTGTGCACACATGATATGTGATGG
130 CGGCGGCATTAGGGTTCCGGTGATCG-GGGGGGCGGGG-GGGTGTGCGCACATGATGTGTGATGG
* * * *
19675872 GTTCTTGAACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
19675937 TTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
*
19676002 ACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATG
* * * *
19676067 CCAAGAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTG
387 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
**
19676132 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATG
452 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
* * *
19676197 AAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGTA
517 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * *
19676262 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATGGCTTGCGCATTCC
582 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
19676327 GTCTTTCTGGCCGGCGTAGTGCCCACCCACCTGCTCGTTTCGTCGGTTGGCCTAGGCATACGGAG
647 GTCTCTCTGGCCGGCGTAGTG-CC-CGC-CC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
* * * * * * *
19676392 TTCATT-CTCAGTCTAAGATTAGACCAAACCGAGGGTTGCGACAGTAGGCTTGACAGCA-GCAGA
708 TTCATTCCT-AGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGATCGACAGCACGCAGA
* * *
19676455 GTGGGA----ACCGA---------T-CG-AT-----CCC-C-GGCT--TGAGTGCCCGCACGCTT
772 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGCTGAGCGCCCGCACGCTC
* ** * *
19676496 GTTTCGTGGGTTGACTTAGGGGTATGGAGTTCATTCCCAGTTTAAGCATACGG
837 GTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
19676549 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGTTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * ** *
19676614 TGTGTTGATCCCGTATTTTTGGTCGTCGGGGCACCATCACCAGAGCATCACCGGAGAACCTAACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACC
* * * *
19676679 GGCGGCATTAGGGTTCCGGCT-ATCGGAGGGGCCGGGGAGGGGGGTGTGCGTACATGCTGTGCGA
131 GGCGGCATTAGGGTTCCGG-TGATC-G-GGGG--GGCG-GGGGGGTGTGCGCACATGATGTGTGA
* *
19676743 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCAAGAACTCACACC
190 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19676808 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGGG
255 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
* *
19676873 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGATTTTTTTTTGTG
320 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA--ATTTTTTGTG
* * * * *
19676938 CATGCCAACAAAAATAAAAGGATCATGTCCACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAGT
383 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** ** * *
19677003 TTTAAAAAATCCGGAATTGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCATCTTGC
448 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
* * * *
19677068 CATCAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCAAT
513 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
19677133 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTGCCACACTATCGATCCACGACTTGCGCA
578 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
19677198 TCCCATCTCTCTGACAGGCGTAGTGCCCGCCCGC
643 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
19677232 CCGCCCTCTC
Statistics
Matches: 2931, Mismatches: 351, Indels: 118
0.86 0.10 0.03
Matches are distributed among these distances:
870 178 0.06
871 14 0.00
872 10 0.00
873 4 0.00
874 194 0.07
875 266 0.09
880 2 0.00
881 2 0.00
882 1 0.00
884 1 0.00
885 82 0.03
886 2 0.00
887 12 0.00
888 502 0.17
889 150 0.05
890 242 0.08
891 155 0.05
892 379 0.13
893 125 0.04
894 18 0.01
895 401 0.14
896 189 0.06
897 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACC
GGCGGCATTAGGGTTCCGGTGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGTGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
TAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGGACCC
GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
Found at i:19675681 original size:26 final size:26
Alignment explanation
Indices: 19675645--19675697 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19675635 GTTGACATAG
19675645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19675671 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19675697 G
1 G
19675698 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19679002 original size:26 final size:26
Alignment explanation
Indices: 19678972--19679024 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19678962 GTTGACTTAG
*
19678972 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19678998 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19679024 G
1 G
19679025 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19681614 original size:26 final size:26
Alignment explanation
Indices: 19681584--19681636 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19681574 GTTGACATAG
19681584 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19681610 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19681636 G
1 G
19681637 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19682517 original size:26 final size:26
Alignment explanation
Indices: 19682478--19682530 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19682468 GTTGACTTAG
19682478 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19682504 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19682530 G
1 G
19682531 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19684273 original size:26 final size:26
Alignment explanation
Indices: 19684234--19684313 Score: 115
Period size: 26 Copynumber: 3.1 Consensus size: 26
19684224 TGGGTTGACT
* * *
19684234 TAGGCATACGGAGTTCATTCTCAGTG
1 TAGGCATACAGAGTTCATTCCCAGTC
* *
19684260 TAGGCATACTGAGTTCATTCCCAATC
1 TAGGCATACAGAGTTCATTCCCAGTC
19684286 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
19684312 TA
1 TA
19684314 AGATCAGACC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:19685207 original size:26 final size:26
Alignment explanation
Indices: 19685177--19685229 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19685167 GTTGACTTAG
*
19685177 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
* *
19685203 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
19685229 G
1 G
19685230 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:19685528 original size:901 final size:902
Alignment explanation
Indices: 19683835--19691250 Score: 9206
Period size: 901 Copynumber: 8.3 Consensus size: 902
19683825 ACTTCTTCCG
* * * *
19683835 AAAAAATTTTAAAAATCATGAAAAATAGAGAACGAGTCGTATTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
19683900 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAATGTGAAG
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AAATATGAAG
* * * * *
19683965 ATGTGCCTAAACCCACCTACCACTCTATCGATCCACAGCTTGTGCATCTCGTCTCTTTGGCCGAC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * * * * *
19684030 GTCGTGCCCACTCGCCCACCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCGTACGGAGTTCATTC
195 GTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
19684095 CCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGAAGCACGCAGAGGGGGACC
260 CCAATCTAAGATCAGACCGGACCGAGGGTTCTGGCAACAGGATCGGCAGCACGTAGAGGGGGACC
*** * * * *
19684160 CAACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTGCACGCTCGTTTCGT
325 CGGTCGAT-CTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
19684225 GGGTTGACTTAGGCATACGGAGTTCATTCTCAGTGTAGGCATACTGAGTTCATTCCCAATCTAGG
389 GGGTTGACTTAGGCATACGGAGTTCA-T-TC--------C---C--AG-TC--T----A---A-G
* * *
19684290 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGATGTGC
428 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
19684355 TTGGGCCTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTACCGGAGCA
493 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-----C---ACCGGAGCA
* * * *
19684420 TTATCGGAGAACCTGATCGATGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
547 TCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGC
* * * *
19684485 ACATGATGTGCAATGGGTGCTGGTAGTTGGCTCTTATATTGGCCCCTTATCCCTCATCAAACCTC
611 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
19684550 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
676 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
19684615 TGTCTAAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTG
741 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
** * *
19684680 AATTTTTTTACGCATGCCAACAAAAATACAATGATCATGT-TCACCAAGTTTGGGGCCAAAA-TC
806 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTC
** * * **
19684743 CTTTTGAAAAAATTTTAAAAAATCCTAAAACTT
870 CTTCCGAAAAAATTTTAAAAAATCCTGAACCGC
** * * *
19684776 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGCGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
19684841 CTTAAGGGACCATTGTATGAATTTACAAG-CATTAAAAATGGCATTGGAATGCAGAAATATGAAG
66 CTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCATTGGCATGCAGAAATATGAAG
** * *
19684905 ATGTGCCTAAAGGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTATCTGGTCGAC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* *
19684970 GTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATC
195 GTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * ** * * *
19685035 CTAGTCTAAGATC-GTACCGGATGGAGGGTTCTGGTAACAGGATTGGCAGCACGCAGAGGGGGAC
260 CCAATCTAAGATCAG-ACCGGACCGAGGGTTCTGGCAACAGGATCGGCAGCACGTAGAGGGGGAC
* * * *
19685099 CCGGTCGGTCTACGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCA
324 CCGGTCGATCT-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
19685164 TGGGTTGACTTAGGCATACGGAGTTCATTCCTACTCTAAGCATACGTAGTTCATTCCCAGTCTAA
388 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *
19685229 GATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTT
453 GATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* *
19685294 TTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
518 TTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * *
19685359 ACGATCGGGGGGGC-GGGGGGTGTGTGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTAT
583 ACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
19685423 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTT
648 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
19685488 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGATCACAA
713 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* ** *
19685553 AATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGCACATGCCAACAAAAATACAAGGACCA
778 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * *
19685618 CATCTAAGC-AGCATTT--GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCAC
843 CGTCT-ACCAAG--TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGC
* *
19685678 AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
19685743 CTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGTAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * *
19685808 TGTACCTAAACCCACCTACCACCCTACCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCCG-C
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGAC
* * * * * * *
19685872 GTAGTGCCCGCTCGCTCGCCCGCCTGCTTGTTTCATCTG-TGGCTTAGGCATACGGAGTTCATTC
195 GTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * ** ** * **
19685936 CCAATATAAGAGT-GGATTGGAGTGAGGG-T-T-GCAACAGTAGGATCGGCAACACACAGAGGGG
260 CCAATCTAAGA-TCAGACCGGACCGAGGGTTCTGGCAAC---AGGATCGGCAGCACGTAGAGGGG
* * * *
19685997 GACCTGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGGTCG-T
321 GACCCGGTCGAT-CTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
19686061 TCTGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
385 TC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
19686126 CTAAGATCAGACCGGCCCGAGGGTTGCGGCAGAACATGCTAGGCTCGGACATGTGCTGGTGACC-
449 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCG
* * * * *
19686190 AATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCGGAAAACCTG-CCGACGGTATTGGGG
513 CATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGG
* *
19686254 TTCCGACAATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGAC
578 TTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
19686318 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
642 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
19686383 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
707 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
19686448 TCATAAAATGTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
772 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* *** *
19686513 GGATCACGACTACCAAGTTTTTTGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATGCC-GAACC
837 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCTGAACC
*
19686577 AC
901 GC
* *
19686579 AAAATGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
19686644 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
19686709 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * * *
19686774 TAGT----TCCCGCCCG----CCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTCCATTCC
196 TAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** *
19686831 CAATCTAAGATCAGACCGGATTGAGGGTTGC-GGCAGA-AGGATCGGCAGCATGTAGAGGGGGAC
261 CAATCTAAGATCAGACCGGACCGAGGGTT-CTGGCA-ACAGGATCGGCAGCACGTAGAGGGGGAC
* * * * * *
19686894 CCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCTCGCACTCTTGTTTCG
324 CCGGTCGAT-CTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* *
19686959 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAA
388 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19687024 GATCAGACAAGACCAAGGGTTGCAGCAGCACATGCTGGGCTCCGGCATATGCTGGTACTGCATTT
453 GATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
** * * **
19687089 TTCTTCACCGGGGCACCATCATCGGAGCGTCATCGGAGAACCTGACCGACAACATT-GGGTTCCG
518 TTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * *
19687153 ATGATCGAGGGGCC-GGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
583 ACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* ** *
19687217 ATTGG-CCCCTATCCCTCATCAAACCTCAAGAACAAACACCCCCTCAAAGAGCATTTGAGATTTT
648 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
19687281 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGATACGTTTTTCAAATGGTCACAA
713 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
19687346 AATCTTATACACTTCGAGTTTTAAGCTGAATTTTTTTGTGCATGCCAA-TAAAATACAAGGATCA
778 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* ** * *
19687410 CGTCTACCAAGTTTGGGGCCAAAACTACTTTTGAAAAAATTTTAAAAAATCTTGAACTGC
843 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGC
*
19687470 AAAAAGTTTCAAAAATCATCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
***
19687535 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
19687600 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * * * * * * ** *
19687665 TAGTGCCCACCCGCCC-CTCGCCTGTTCATTTTGTCGGTTGGCTTAGTAATACGAAGTTCATTCC
196 TAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * * * * *
19687729 CAATCTAAGATCAGACCAAACCGAGGGTTATGGTAGCAAGATCGACAGCATGTAGAGGGGGACCT
261 CAATCTAAGATCAGACCGGACCGAGGGTTCTGGCAACAGGATCGGCAGCACGTAGAGGGGGACCC
* * * *
19687794 GGTCGATCCTCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTA
326 GGTCGAT-CTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * *
19687859 GGTTGACTTTGGCATATGGAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCCCAGTCTAAGA
390 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** **
19687924 TGGGACC-GAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGCACCGC-TTTT
455 TCAGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * *
19687987 ATCGTC-ACAAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTT-C
519 -TCTTCGTC-GGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * * * *
19688050 GGCGATCAGGGGGGTCGGGGGGCGGGTGTACGTACATGATCTGTGATGGGTGCTGGTACTTGGCC
582 GACGATC-GGGGGG-C-CGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
19688115 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
643 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
19688180 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGAGACACTTTTTTCAAATGGT
708 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
19688245 CAGAAAAT-TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAG
773 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * *
19688309 GATCACGTCTACCAAGTTTAGGGCCAAAACACCTTTCAAAAAAATTTAAAAAAAT-CTCGAACCG
838 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCG
*
19688373 T
902 C
* * *
19688374 AAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * * * *
19688439 CTTAAAGGACCATTGTATGAATTTACAAGCAAAAAAAATGGCATTGGCACGTAAAAATGTGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * *
19688504 TGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* ** *
19688569 TAGTGCCCGCCCG---G-CCACCCGTTCGTTTCG-CTGGTTACCTTAGGCATATGGAGTTCATTC
196 TAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTC-GGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** **
19688629 CCAGTCTAAGAAT-AGACTGGACCGAGGGTTGC-GACAATCA-GATCGATAGCACACAGAGGGGG
260 CCAATCTAAG-ATCAGACCGGACCGAGGGTT-CTGGCAA-CAGGATCGGCAGCACGTAGAGGGGG
* * * * * *
19688691 AACCGGCCGATCCCCGGCTTGCGCATCACGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTT
322 ACCCGGTCGAT-CTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
19688756 TGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCT
386 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
19688821 AAGATCGGA-TAGGACCAAGGGTTGCGGCAACACATGCTGGGCTCGAGCATGTGCTGGT-CCTGC
451 AAGATCAGACCA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GC
* * ** * *
19688884 ATTTTTCTTCATCGGGGCACCTTCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
514 ATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGT
* * *
19688949 TCCGATGAT-GGGGGGCCCGGGGGGGCGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
579 TCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* ** *
19689013 CTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACAAACACCCCCTTAAAGAGCATTTGGG
643 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
19689078 ATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
708 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
19689143 CACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAACACAAG
773 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * *
19689208 GACCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAAT-CTCGAACCG
838 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCG
19689272 C
902 C
* *
19689273 AAAAAG-TTCTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAG
1 AAAAAGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*** *
19689337 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATGTGAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* *
19689402 ATGTGCCTAAACCCATCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGAC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
*
19689467 GTAGTGCCCGCCCGGCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
195 GTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
19689532 CCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACAAGATCGGTAGCACGTAGAGGGGGACC
260 CCAATCTAAGATCAGACCGGACCGAGGGTTCTGGCAACAGGATCGGCAGCACGTAGAGGGGGACC
* * * * * * * *
19689597 CGATCGATCCTCGGCTTGTGTATCCCGCCCCTTTAGCCGGCTAAGCGCCCTCATGCTCGTTTCGT
325 CGGTCGAT-CTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
*
19689662 GGGTTGACTTAGGCATAC---G---A-----AG--T-----T-C--A--T--TT-CGAGTCTAAG
389 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
** * * ** * *
19689701 ATCAGACTGGACTGAGGGTTACAACAGCACATGCTGGGCTCGGGCATGTGCTGGTTCCGTATTTT
454 ATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* *** * *
19689766 TCTTCATCGGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACTCG-CGGTATTGGGGTTCCG
519 TCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGAC-CGACGGCATTGGGGTTCCG
* *
19689830 GCGATCGGGGGGACCGGGGGTGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
583 ACGATCGGGGGG-CCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
19689895 ATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACGCCACCTTAAAGAGCATTTGAGATT
646 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
19689960 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTCAAATGGGGACACTTTTTTCAAATGGTCGA
711 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC-A
*
19690025 -AAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
775 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * **
19690089 TCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCTAAAAAATTTTAAAAAATCATGAACCAA
840 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGC
** * * * *
19690152 AAAAAGTTTTGAAAAGCGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* ** *
19690217 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACACAGAAATATGAAAA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * *
19690282 TGTGCGTAAACCCACCTACCACCCAATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* *** *
19690347 TAATGCCCGCCCGCCCG-CCA---G-TC----CAAGGGTTGGCTTAGGCATACGGAGTTTATTCC
196 TAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * ** * *
19690403 CAATCTAAGATCAGACTAGACCAAGGGTTGC-GGTAGTAGGATCGGTAGCACGTAGAAGGGGACC
261 CAATCTAAGATCAGACCGGACCGAGGGTT-CTGGCAACAGGATCGGCAGCACGTAGAGGGGGACC
*
19690467 C-GTCCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
325 CGGT-CGAT-CTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
*
19690530 TGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C--A
388 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19690579 GAT----------CGAGGGTTGCGGCAGTAAATGCTGGGCTTGAGCATGTGCTAGTGTCGCATTT
453 GATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
** ** * *** * *
19690634 TTCTTCGTCGGGTAACCATCGTCGAAGCATTGCCGGAGAACCTGACCGGCGGCATTGGAGTTCCG
518 TTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCG
** *
19690699 GTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTAT
583 ACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
19690764 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTT
648 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
19690829 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
713 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
19690894 AATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTCGTGCATG-CAAAAAAAATACAAGGATCA
778 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * *
19690958 CGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGT
843 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGC
* * *
19691018 AAAAAGTTTCAAAAATCATGAAAAATAAAAAACGTGTCGTCTTGCCATGAAACTTCCCGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
19691083 CTTCAA-GGACCATTGTATGAATTTAAAAGCCACAAAAATGGCATTGGCATGCAGAAATATAAAG
66 CTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
19691147 ATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGTTTGCGCATCTCGTCTATCTGGCCAAC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* *
19691212 GTAGTGCCCACCCGCCCGGCCACCCGCTCGTTTCGTCGG
195 GTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGG
19691251 CCCCTGGTGA
Statistics
Matches: 5703, Mismatches: 653, Indels: 304
0.86 0.10 0.05
Matches are distributed among these distances:
866 255 0.04
867 209 0.04
868 9 0.00
869 154 0.03
870 105 0.02
871 2 0.00
872 1 0.00
874 2 0.00
875 5 0.00
877 118 0.02
878 23 0.00
879 465 0.08
880 7 0.00
881 1 0.00
882 2 0.00
884 1 0.00
885 1 0.00
886 2 0.00
890 2 0.00
891 256 0.04
892 161 0.03
893 73 0.01
894 279 0.05
895 19 0.00
897 16 0.00
898 478 0.08
899 318 0.06
900 45 0.01
901 1263 0.22
902 274 0.05
903 302 0.05
904 376 0.07
906 1 0.00
911 1 0.00
914 101 0.02
915 1 0.00
918 1 0.00
922 1 0.00
924 2 0.00
925 1 0.00
930 1 0.00
938 2 0.00
939 3 0.00
940 256 0.04
941 108 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
TAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAATCTAAGATCAGACCGGACCGAGGGTTCTGGCAACAGGATCGGCAGCACGTAGAGGGGGACCC
GGTCGATCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
TTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGC
Found at i:19686107 original size:26 final size:26
Alignment explanation
Indices: 19686078--19686130 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19686068 GTTGACTTAG
*
19686078 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19686104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19686130 G
1 G
19686131 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19687008 original size:26 final size:26
Alignment explanation
Indices: 19686972--19687024 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19686962 GTTGACTTAG
*
19686972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19686998 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19687024 G
1 G
19687025 ATCAGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19688800 original size:26 final size:26
Alignment explanation
Indices: 19688771--19688823 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19688761 GTTGACTTAG
*
19688771 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19688797 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19688823 G
1 G
19688824 ATCGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19691716 original size:476 final size:475
Alignment explanation
Indices: 19690785--19691726 Score: 1348
Period size: 476 Copynumber: 2.0 Consensus size: 475
19690775 ATCCCTCATC
* * * **
19690785 AAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
1 AAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAAAGCC
* *
19690850 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTT
* * ** *
19690915 TTTGCTGAATTTTTTCGTGCATGCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAA
131 TTAGCTAAATTTTTTCGTGCATGCAAAAAAAATACAAGGATCACGTCAACCAAGTTTAGGGCCAA
**
19690980 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
196 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATA
*
19691045 AAAAACGTGTCGTCTTGCCATGAAACTTCCCGTGAAGGCTTCAAGGACCATTGTATGAATTTAAA
261 AAAAACGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAAGGACCATTGTATGAATTTAAA
** *
19691110 AGCCACAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTAT
326 AGCCACAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTAACACCCTAT
* * * * * * *
19691175 CGATCCAAGGTTTGCGCATCTCGTCTATCTGGCCAACGTAGTGCCCACCCGCCCGGCCACCCGCT
391 CCATCCAAGGCTTGCGCATCCCGTCTATCTGGCCAACATAGCGCCCACCCACCCGCCCACCCGCT
*
19691240 CGTTTCGTCGGCCCCTGGTG
456 CGTTTCATCGGCCCCTGGTG
*
19691260 AAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAAAGCC
1 AAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAAAGCC
*
19691325 ATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGACTTT
66 ATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTT
* *
19691390 TTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTAGGGCCA
131 TTAGCTAAATTTTTTCGTGCATG-CAAAAAAAATACAAGGATCACGTCAACCAAGTTTAGGGCCA
* *** ** * * *
19691455 AAACTCTTTTTGAAAAAATTTTAAAAAATCTTGAAGCACAAATAGTTTCAAAAATCTTGAAAAAT
195 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAAT
* *
19691520 AGAAAATGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAA-TTA
260 AAAAAACGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAA-GGACCATTGTATGAATTTA
* * * *
19691583 ACAAGCTATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAACACCC
324 A-AAGCCACAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTAACACCC
* * * *** * * * *
19691648 TATCCATCCACGGCTTGGGCATCCCGTCTCTCTGGCTGGCATGGCGCCCGCCCACCTGCCCGCCC
388 TATCCATCCAAGGCTTGCGCATCCCGTCTATCTGGCCAACATAGCGCCCACCCACCCGCCCACCC
19691713 GCTCGTTTCATCGG
453 GCTCGTTTCATCGG
19691727 TTGGCTTAGG
Statistics
Matches: 409, Mismatches: 55, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
475 147 0.36
476 262 0.64
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (475 bp):
AAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAAAGCC
ATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTT
TTAGCTAAATTTTTTCGTGCATGCAAAAAAAATACAAGGATCACGTCAACCAAGTTTAGGGCCAA
AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATA
AAAAACGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAAGGACCATTGTATGAATTTAAA
AGCCACAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTAACACCCTAT
CCATCCAAGGCTTGCGCATCCCGTCTATCTGGCCAACATAGCGCCCACCCACCCGCCCACCCGCT
CGTTTCATCGGCCCCTGGTG
Found at i:19691925 original size:26 final size:26
Alignment explanation
Indices: 19691895--19691947 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19691885 GTTGACTTAG
*
19691895 GCATACAGAGTTCA-TTCCTAGTCTAA
1 GCATACAGAGCTCATTTCC-AGTCTAA
19691921 GCATACAGAGCTCATTTCCAGTCTAA
1 GCATACAGAGCTCATTTCCAGTCTAA
19691947 G
1 G
19691948 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTCATTTCCAGTCTAA
Found at i:19692825 original size:26 final size:26
Alignment explanation
Indices: 19692796--19692848 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19692786 GTTGACTTAG
*
19692796 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCACAGTCTAA
*
19692822 GCATACAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
19692848 G
1 G
19692849 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:19694617 original size:26 final size:26
Alignment explanation
Indices: 19694581--19694630 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19694571 GTTGACTTAG
19694581 GCATACAGAGTTAATTCCCAGTCTGA
1 GCATACAGAGTTAATTCCCAGTCTGA
* *
19694607 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTAATTCCCAGTCT
19694631 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTGA
Found at i:19694712 original size:898 final size:899
Alignment explanation
Indices: 19691260--19715519 Score: 15109
Period size: 900 Copynumber: 26.7 Consensus size: 899
19691250 GCCCCTGGTG
* **
19691260 AAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAAAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
19691325 ATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGACTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
19691390 TTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTAGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** ** * * * *
19691455 AAACTCTTTTTGAAAAAATTTTAAAAAATCTTGAAGCACAAATAGTTTCAAAAATCTTGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
19691520 AGAAAATGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* ** *
19691585 AAGCTATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * *
19691650 TCCATCCACGGCTTGGGCATCCCGTCTCTCTGGCTGGCATGGCGCCCGCCCACCTGCCCGCCCGC
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCA----CCCGCCCGC
* * * **
19691715 TCGTTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCCAGG
452 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
* * * * * * * * *
19691780 TTTACAGCAACAGGATTGGCAGCACGTAGAGGGAGACCCGGTCGATCCCCGGCTTGCGCAACCCG
517 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * * * * *
19691845 CCCCTTTGGCCGGTTGAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
582 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * *
19691910 TCCTAGTCTAAGCATACAGAGCTCATTTCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAG
647 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
* * *
19691975 CACAGGCTGGGCTCGGGCATGTGCTGGTGCCAG-ATTTTTCTTCGCCGGGGCACCATCATCGGAG
712 CACATGCTGGGCTC-GGCATGTGCTGGTGCC-GTATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * *
19692039 CATCACTGGAGAACCTGATCGACGGCATTCGGGTTCCGACGATCGGGGGTGCCG-GGGGGTGTGC
775 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGC
* * * *
19692103 GCACATAATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGG-CCCGTATCCTTCATC
840 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19692162 AAACCTCGAAAACTCACACCCTCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
19692227 ATTAAAGCGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGATT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
19692292 TTAGCTTAATTTTTTTGTGCCTGCAAAAAAAAAAAATACAAGAATCATGTCTACCAAGTTTGGGG
131 TTAGCTGAATTTTTTTGTGCATGC---CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * * * *
19692357 CCGAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCCAAAATCATGCAA
193 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* *
19692422 AATAGAAAACTAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
258 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
19692487 TACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACC
323 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * ** * *
19692552 CTATCGATCCACGGCTTGCACTTCCCGTTTCTCTGGCC-AGCGTAGTGCCTGCCCGTCCGTCAGC
388 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCACCCGCCCGC
* *
19692616 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGG
452 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
* * * * * *
19692681 GTTACGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCTG-GCTGATCCCCGGCCTACGCATCCC
517 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCC
* * * * *
19692745 ACCACTCTGGCCGGCTGAGCGCCCGCATGCTAGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA
581 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* ** * *
19692810 TTCCCAGTCTAAGCATACAGAGTTCATTCATAGTCTAAGATCGGACCGAACCGAGGGTTACGGCA
646 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* *
19692875 GCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATC--C----
711 GCACATGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * *
19692934 C--CA---AAGAACCTGACCGA-GACATTGGGGTTCCGGCGATC-GGGGGGCCGGGGAGGGTGTG
775 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGG-GGGTGTG
19692992 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
839 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19693053 AAACCTTGAGAACTCAAACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * *
19693118 ATTAAAGTGTCTAAAATTGGGACACTTTTTTCAATTGGTTACAAAATCTTATACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
19693183 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
19693248 AAACTCCTTCCAAAAAAATTTCAAAAAATCCCGAACCCCAAAAAGCTTT-GAAAATCATGAAAAA
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAA
* * * *
19693312 TGGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAATGCTTAAGGGACCATTGTATTAATTTA
260 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
19693377 CAAGCCATAAAAATGGCATTGGCACGTAGAAAGATGAAGATGTGCCTAAACCCACCTATCACCCT
325 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** **
19693442 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGAAGGTGTAGTGCCCGCCCACCCGCCCGCTCG
390 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCG
* * * *
19693507 TTTCGTCGGTTTGCTTAGGCATACAGAGTTTATTCCCAGTCTAAGATCAGATCAGACTGAGGGTT
455 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* * * * ** * *
19693572 GCGGTAGCAAGATTGGCAGCATGCAGAGGGGGACCCGCCCGATCCCTGGCTTGCGCATCCCTCCC
520 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * *
19693637 CTCTGGTCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
585 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
19693702 CATTC-AAGCAAACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAC
650 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * * * *
19693766 ATGCTGGTCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATTGTCGGAGCATC
715 ATGCTGGGCTCG-GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* * * *
19693831 ACTGGAGAACCTGACCGACGGCATTAGGGTTCAGGCGATCGGGGGGGCC-ACGGGGTGTGCGCAC
779 ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCAC
* * * *
19693895 ATGATGTGCGATGGGTGTTGGTACTCGGCCCTTATATTGGCCCTCC-ATTCCTGATC
844 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CCTATCCCTCATC
* * *
19693951 AAACCTAGAGAACTCACACCTCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19694016 ATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
19694081 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
19694146 AATCTCC-TCCGAAAAAAATTTAAAAAATCCCGAACTGCAAAGAGTTTCAAAAATCGTGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* *
19694210 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
19694275 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
19694340 TCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCATCTGCCCGCTCGT
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGT
* **
19694405 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATTGGACCAGACTGAGGGTTG
456 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* *** * * * *
19694470 TGGCAGCAGGATCAATAGCACGCAGAGAGGGACCCGATCGATCCCCAGCTTCCACATCCCGCCCC
521 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * * * *
19694535 TCTGGTCGACTGAGCGCTCGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTAATTCCC
586 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * **
19694600 AGTCTGAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGCATTGCGGCAGCACA
651 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
* * * **
19694665 TGCTTGGCTCAGGCATGTGCTCGTGCCATATTTTTCTTCACCGGGGCACCATCG-CAGGAGCATC
716 TGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATC
* * * * *
19694729 ACAGGAGAACCTAACCGGCGGCATTGGGGTTCCGGTGATC-GGGGGGCCG-GGGGGTATGCGCAC
779 ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCAC
* *
19694792 TTGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCC-CATC
844 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATC
*
19694848 AAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
19694913 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
19694978 TTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
19695043 AATCTCC-TCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAGAGTTTCAAAAATCGTGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
*
19695107 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCA---T-TG----T--
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
19695162 -----AT-AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* **
19695221 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCTGCCCGCCCGCTCGT
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGT
* * * * * *
19695286 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTACGATCGGACCAGACTGAAGGTTA
456 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* ** * * ** *
19695351 CAGCAGCAGGATCGATAGCACGTAGAGAGGGACCCGATCGATCCCCAACTTGCACATCCCGCCCC
521 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * * *
19695416 TTTGGCCGACTGAGCACTCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTAATTCCC
586 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* ** * * * * *
19695481 AGTCTGAGCATATAGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCA-A
651 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
* * * * ** * ***** ** *** * * *
19695545 -GATTGG--CAGCACGTAGAGGGGGACCCG-CCCGATCCCCAG-CTTACGCATCCCTCCCCTCTG
716 TGCTGGGCTCGGCATGT-GCTGGTG--CCGTATTTTTCTTC-GTC-GGGGCA-CCAT--CGTCGG
* * * * * * * * **
19695605 -G--TCAACTGAGCACCCG--C-ACGCTCGTTTCGTGGGTTGACTTAGGC-ATAC--GGAGTTC-
773 AGCATCACCGGAGAACCTGACCGACG-GC-ATT-G-GGGTT--C--CGGCGAT-CGGGGGGGCCG
***** * * * * ** * * * **
19695660 ATTCCCAT-T-CAAGCAAACGAAGTTC-ATTCCCAGT-CTAAG-A-TCGGACCGGATCGAGGGTT
829 A-GGGGGTGTGC--GCACATGATGTGCGA-T--GGGTGCT-GGTACTTGGCCCTTAT--A---TT
* * **
19695719 GCGGCAGCAC-ATGCTGGTC-TC
882 --GGC-CCCCTAT-C-CCTCATC
* * * * * *** * **** ** * * * ***
19695740 GAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATTGTCGGAGCA--TCACCGGAGAA
1 AAACCT-CG-AGAACTCACA-CCCCCTT-A---AAG-AGCATT-T--GAG-ATTTTACAGG-TTT
* * ** * ** ** *** * *
19695803 CCTGACC-G-ACGGCATTAGGGT-TCAGGCGATCGGGGGGAC------CAGGGGGTGTGCGC-AC
53 GCTG-CCAGTA-GCCATTAAAGTGTC-TGAAAT-GGGGACACTTTTTTCA-AATG-GT-CACAAA
** * ** * ** ** * * * * **
19695858 ATGATGTGCGA-TGGGTGTTGGTA-CTTGGCCCTTATATTG-GCCCT-CC-------ATTC-CTG
111 ATCTTGTAC-ACTTCGAGTTTTTAGC-T-G-AATTTTTTTGTG-CATGCCAAAAAAAATACAAGG
* * * ** * * ** * ****
19695911 ATCA----AACCTAG---AGAACTCACACCTCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCT
171 ATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTT-CCGA--AA---AAATTTTA-AAAAAT-C-
* * * ** * * *** **** * *
19695969 GCCAGTAGC-CATTAAAGTGTT-TGAAATGGGGACATTTTTTTCAA--A-TGGTC---ACA--AA
226 -CC-GAACCGCA-AAAAGT-TTCAAAAATCGTGA-AAAATAGAAAACGAGTCGTCTTGCCATGAA
* ** * * * * * * *
19696024 ATCTTGTACACTTCG-AGTTTTTAGCTGA--ATT-T-T--TTTGTGCATGCCAAAAAAAAT-ACA
286 A-C-T-T-CACGT-GAAGGCTTAAG-GGACCATTGTATGAATT-TACAAGCC-ATAAAAATGGCA
* * * ** ** * * * * ** *** ***
19696081 -AGG-A-TCACATCTACCAAGTTTGGGGCC-AAATCTCCTCCGAAAAAAATTTAAAAAATCTCGA
343 TTGGCACGCAGAAATATGAAG-AT-GTGCCTAAA-C-CCACC--TACCACCCT-ATCGATC-C--
* ** * ** ***** * ** ** ** ** * ** ** * **
19696142 ACTGCAAAGAGTTTCAAAAATC-AT-G-AAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TTC
398 ACGGC-TTGCGCATCCCGTCTCTCTGGCCGACGTAG--TGCCCGCCCACCCGCC-CG-CTCGTT-
* ** * * ** * * * *
19696203 ACGTC--AAGGCTTAAGGGACCAT-TGTA-TGAATTTACAAGCCATAAAAATGGCATTGGCACAC
457 TCGTCGGTTGGCTT-A-GG--CATACGGAGTTCA-TTCCCAGTC-T-AAGAT--CA---G-AC-C
* * * *** * ** ** * * *
19696264 AGAAATATGAAGATGTGCCTAAAC-CCATCTACCACCCTATCGATCCACG-GCTTGTGCATCCCG
508 AG--A-CTGAGGGT-TGCGGCAGCAGGATC-GGCA-GC-A-CG---CA-GAG---GGGGA-CCCG
* * ** * * * * * ** * * *** * *
19696327 -TC--TCTCTGGCCGGCGTAGTGCCCACCCATC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
557 ATCGATCCCCGGCTTGCGCA-T-CCCGCCCCTCTGGCCGGCT-G-AGCGCCCGCACGC-T-CG-T
* * * * ** * * ** ** *
19696388 TACG-GAGTTCA-TTCCCA-GCCTA-GGA--TCA-GACCAGACTGAGGGTTGTGGCAG--CAGGA
615 TTCGTGGGTTGACTT---AGGCATACGGAGTTCATTCCCAGTCT-AAGCATACGG-AGTTCA--T
** * * * ** * * * ** *
19696444 TCGATAGCACGTAGAGA-GGGACCCGATCGATCCCCA-ACTTGC-ACATCCCACCCCTCTGG-TC
673 TC-CCAG-TC-TA-AGATCGGA-CCG---GA--CCGAGGGTTGCGGCAGCACA-TGCT-GGGCTC
* * * * **
19696505 GGC-TGAGC-GCTCGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTA--ATTCCCAGT
726 GGCATGTGCTGGT-GC-CG-T-ATT---T---TT--CTT---CGT-C-GGGGCACCA-T--C-GT
* * * * * ** **
19696566 CTGAGCAT-A-CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGCATT---GCGATC-GG
770 CGGAGCATCACCGGAG---A--ACCTGAC--CGA-CGG--C--ATTG-GGGTTCCGGCGATCGGG
*
19696625 GGGGCCGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
822 GGGGCCGAGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
19696690 CCCTATCCCTCATC
886 CCCTATCCCTCATC
* *
19696704 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* **
19696769 ATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
19696834 TTTGCTGAATTTTTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
19696899 AAACTCCTTCC-AAAAAATTTTTAAAAATTCTCAAACCGCAAAAAGATT-AATAAATCCTGAAAA
196 AAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA-AAATCGTGAAAA
*
19696962 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTT
259 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** * * * *
19697027 ACAAGCCATAAAAATGAAATTGGCATGCAGAAATATAAAGATGTTCCTAAACCCACCTACCACCT
324 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * *
19697092 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCTTCCGCCCACCCCGCT
389 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCC-GCCCGCT
** ** **
19697157 CACTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTAGACCAAGGG
453 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
** * * * * * *
19697222 TTATGGTAGTAGTATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTT--GCA------
518 TTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* *
19697279 --------CC--C--A-------CACACTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATT
583 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
19697325 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTGATATCGGACATCGGACTGGACTGAGGGTTA
648 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-A-A---G--ATCGGACCGGACCGAGGGTTG
* * * *
19697390 CGACAACACATGCTGGGCTCGAGCACGTCCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGT
706 CGGCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGT
** ** *
19697455 CGGAGCATCGTCGGAGAACCTGACCGGTGACATTGGGGTT-CGGCGATCGGGGGGGCCGA-GGGG
770 CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGG
19697518 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
835 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * *
19697583 AAACCTCAAGAGCTCACACCCTCTTACAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19697648 GTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
19697713 TTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
** * * * * ** *
19697778 AAAAGCTTTCCGAAAAAATTTAAAAAAATTCGGAACCGCAAAAAGTTTTGAAGATCGTGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
*
19697843 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * * *
19697908 AGGCCATCAAAATAGCATTGGCATGCAGAAATATGATGATGTGCCTAAACCCACTTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* ** **
19697973 CCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCTTGCCAGCCCACCCGTTCGC
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC---CC-GCCCACCCGCCCGC
* * * **
19698038 TCGTTTCATCGGTTGGCTTAGGGATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGG
452 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
* * * * * ** * ** ** * *
19698103 GTTACAGTAGCAGAATTGGCAGCACATAGAGGGGGTCTTGGCCAATCCCCGGCTTGCGCATCCCA
517 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * * *
19698168 CCCCTCTGGCCGGCTGATCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTCCAT
582 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
19698233 TCCCAGTCTAAGCATATGGAGTTCATTCTCAGCCTAAGATCAGACCGGACCGAGGGTTGTGGCAG
647 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
* * *
19698298 CACATGCTGGGCTTGGGATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC-ACTGGAGC
712 CACATGCTGGGCTCGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTC-GGAGC
* * * * * *
19698362 ATCGCCGGAGAACCTGACTGGCGGGATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGGTGTGCG
776 ATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCG
* *
19698427 CACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATC
841 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
19698486 AAACCCCGAGAACTCACACCCCCTTCACGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
19698551 ATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGCTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
**
19698616 TTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAAA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * **
19698680 AAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATTATGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* *
19698745 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTATATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
19698810 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
19698875 TCGATCCACGGCTTGCGCATCCTGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCCCGCCCACTC
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-CACCCGCCCGCTC
* * ** * *
19698940 ATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGT
454 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
*** * * * ** * * *
19699005 TGCAATAGCAAGATTGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCACATCCCACC
519 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
** ** *
19699070 CCTCTGGTTGGCTGAATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
584 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * *
19699135 CCTGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCA
649 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * * *
19699200 CATACTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTCTTCGCCGGGGCACCATCATCGGAGCAT
714 CATGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
** * * *
19699264 CGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGCC-AGGGGGTTTGCGCA
778 CACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCA
19699327 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
843 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
19699384 AAACCTCTAGAACTCACCCCCCCTTGAAGAGCATTTGAGATTTGACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
19699449 ATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTTAGAAAATCTTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
19699514 TTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * ** *
19699579 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* ** * **
19699644 AGAAAATGAGTCGTCTCACCATGAAACTTCACATGAAGGCTTAAGGGATTATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** *
19699709 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
19699774 TCGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGAC---G-G---G--CA------TGCTCGT
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGT
* * *
19699824 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAATCTAAGATCTGACCAGACTGAGGGTTG
456 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* * * * * * * * **
19699889 TGACAACAGGATCGGTAGCACGCAGAGAGGGACCCGACCGATCCCTGGCTTGTGCATCTAGCCCC
521 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * * *
19699954 TCTGGCCGGCTGAGCGCTCACACGTTCGTTTCGTGGGTTGACTTAGGCTTATGGAGTTCATTCCT
586 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
19700019 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGACAGCAC
651 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG-CAGCAC
* ** *
19700084 ATGCTGGGCTCGGGCATTTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGATCATC
715 ATGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* * ** * * *
19700149 ACCGGAGAACCTGACCGACGACATTAGGGTTCTAGTGATCGGAGGGGCCG-GGGGGTGTGCACAC
779 ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCAC
* * *
19700213 ATGATGTGGGATGGGTGCTGGTATTTGGGCCTTATATTGGCCCCCTATCCCTCATC
844 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
19700269 AAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTACCAGTAGGC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
19700334 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTG
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
19700399 TT-GCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
19700463 AAACTCCATCCGAAGAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * * *
19700528 GGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTAA
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
19700593 AAGCCATAAAAATGGCATTGGCACAG-AGAAATATGAAGATGTTCCTAAACCCACCTGCCACCTT
326 AAGCCATAAAAATGGCATTGGCAC-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * ** ** *
19700657 ATCGATCCACGACTTGCGCATCCCATCTCTTTGACCGGTGTAGT----GCCCACCTACCCGCTTG
390 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCG
* * * ** **
19700718 TTTTGTCGGTTGGCTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATTTGACCAGACCAAGGGTT
455 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* * * * * *
19700783 GTGGCAACAGGATCGGTAGCATGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCC
520 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * *
19700848 CTCTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
585 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * *
19700913 CAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGGTTACGGTAGCAC
650 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * * ** *
19700978 ATGCTAGGCTCAAGCATGTGCTGGTGCCATATTTTTCTTCACCGAGGCACCA---TC---G--T-
715 ATGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
** * * ** *
19701034 --CGGAGAACCTGACCGGTGGAATTGGGATTCCGAAGATCGGGGGGGCCG-GGGGAGTGTGCACA
779 ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGG-GTGTGCGCA
* * * ** *
19701096 CATGATGTGCGATGGGTTCTGGTACTTGGCCTTTATA-AGAACCCATATCCCTCATC
843 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
19701152 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19701217 ATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
** ** * ** * *
19701282 TTAATTGAA-TTTTTTGTGCACACCAACAAAAATACAAGGATCACGTCTATGAACTTTGGAGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
19701346 AAACTCCTTTCGAAAAAATTTTAAAAAA-CCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAC
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
19701410 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
260 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
19701475 CAAGCCATAAAAATGGCATTAGCATGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCT
325 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
19701540 ATCGATCCACGGCTTGCGCATACCGTTTCTTTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCG
390 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCG
** * **
19701605 TTTCGTCGGTTGGCTTAGGTGTACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTT
455 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* ** * ** * * * *
19701670 CCGGCAGCAGGATCAACAACATACAGAGGGGGACCCGACCGATCCCCAGCTTGCCCATCCTGCCC
520 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* *
19701735 CTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCC
585 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
** *
19701800 CAGTCTAAGCATACGGAGTTCATTTTCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAC
650 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
**
19701865 ATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATC
715 ATGCTGGGCTCG-GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* * *
19701930 GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGAGGGGGTGTGCGC
779 ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GAGGGGGTGTGCGC
* * *
19701995 ACATGATGTGCGATGGGTGCTGGTACCTAGCCATTATATTGGCCCCCTATCCCTCATC
842 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
19702053 GAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTTCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
19702118 ATTAAAGTTTCTAAAATGGGGACACTTTTTTCAAAAGGTCACAAAATGTTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
19702183 TTAGCTGAATTTTTTTGTGCATTCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
19702248 AAACTCCTTCCGAAAGAATTTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCGAGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
*
19702313 AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
19702378 AAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
** *
19702443 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCG----CCCGCCTGCTCGT
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGT
*** *
19702504 TTTACCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
456 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* * * * ** * *
19702569 CAGCAGCAAGATTGGCAGTACGCAGAGAAGGACCCGATCGATCCCCGACTTGCGCATCTCGCCCC
521 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* *
19702634 TCTGGCCGGCTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
586 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
19702699 AGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACA
651 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
19702764 TGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTT-TT--TC---G------C--CGGAGCATCA
716 TGCTGGGCTCG-GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
* * *
19702815 CCGGAGAACCTAACCGGCGGCATTGGGGATT-CGGCGATCGGGGGAGCCGAGGGGGGTGTGCGCA
780 CCGGAGAACCTGACCGACGGCATTGGGG-TTCCGGCGATCGGGGGGGCCGA-GGGGGTGTGCGCA
*
19702879 CATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATC
843 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19702936 AAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTTCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * *
19703000 ATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATGTTGTACATTTCGAGATT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * ** * *
19703065 TTAGCTGAATTTTTTTGTCCACGCCAACCAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * ** * * * *
19703130 AAATTACTTTTGAATAAATTTTAAAAAATCCCGAACCGTAAAAAGGTTT-GAAAATTGTGAAAAA
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-GTTTCAAAAATCGTGAAAAA
* * * * *
19703194 TAGAGAACGAGTCATCTTGCCATGAAACTTCACGTGAACGCCTAAGGGGCCATTGTATGAATTTA
260 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * *
19703259 CAGGCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACTTACCACCCC
325 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * **
19703324 ATCGACCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCTACCCGCTCG
390 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCG
* * *
19703389 TTTCGTCGGTTGGCTCAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTT
455 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* * * * **
19703454 ACAGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
520 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
19703519 CTCTGGCTGGCTGAGCGCTCGCACGCTTGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCC
585 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * *
19703584 CAGTCTAAGCATACGGAGTTCATTCCCAGTATAGGATCAGACCGGACCGAGGCTTGCAGTAGCAC
650 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * * ** * *
19703649 ATGCTGGCCTCGAGCATGTGCTGGTGCCGCATCTTTCTTCGTTTGGGAACCATCGTCGAAGCATC
715 ATGCTGGGCTCG-GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* ** * * *
19703714 GCCGGAGAACCTGACCGGTGGCATTGGCGTTCCGGTGATC-GGGGGGCCGGGGGGGGTGTGCGCA
779 ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GAGGGGGTGTGCGCA
* *
19703778 CATGATGTGCGATGGGTGCTAGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATC
843 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
** *
19703835 AAACCTCGAGAACTCACACTGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
19703900 ACTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGATTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * *
19703965 TTTGGTGAATTTTTTTGTGCATG-CAAACAAAAATATAGGGATCCCGTCTACTAAGTTTGGGGCC
131 TTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* **
19704029 AAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAA
195 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * * * *
19704094 TAAAAAACAAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTTTGAATTTA
260 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * ** *
19704159 CTAGACATAAAAATGGCATTGGCACATAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCT
325 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
19704224 ATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCTCTCA
390 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCG
* * *** *
19704289 TTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCTCAGTCTAAGATCAG-GTTGAACCGAGGGT
455 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGT
* * * * *
19704353 TGCGGCAGTAAGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCACGCC
519 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
* * ** * * *
19704418 CCTCTGGCCGACTGAGCGACCGCACTTTCGTTTTGTGGGCTGACTTAGGCATACGGAATTCATTC
584 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * ** * *
19704483 CCAGTCTAACCATATGGAGTTCATTCCCTGTCTAAGATCGGATGGGATCGAGGGTTG-TGCAGCA
649 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * ** **
19704547 CATGCTTGGCTCGGGCATGTACTGGTGCCGTATTTTTTCTTCACCGGGGCACCATCG-CAAAAAG
714 CATGCTGGGCTC-GGCATGTGCTGGTGCCGTA-TTTTTCTTCGTCGGGGCACCATCGTC--GGAG
* ** ** * * * * *
19704611 -TTCACCTGCCTGCCCGCTCGTTTCGTCGTTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
775 CATCACC-G-GAGAAC-CT-G--AC--C----GAC---GGCAT-TGG-G---GTT-CC-GGC---
*** ** * * * * * ** *
19704675 GATCGGATCGAACTAAGGGTTGTG-GCAGCAGGATCGATAGCACACAGA-GGGGGACCCG-AC-C
815 GATCGGGGGGGCCGAGGGGGTGTGCGCA-CATGAT-G-T-G----C-GATGGGTG-CTGGTACTT
* ** * * *
19704736 GATCCCCGA-CTTGCGCATCCC--GCCC-CA-C
870 G-GCCCTTATATTG-GC-CCCCTATCCCTCATC
*** ** * * * * ** * ** * * * *** *
19704764 -TGGCTGGCTGAGCGCCCACATGCTCGTT-TCGTG-GGTTGA-CTTAGGCATACGAAGTTCATTC
1 AAACCT--C-GAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATT----TTAC-AGGTTTGCTG
* ** * *** *** * * *
19704825 CCAGTCTAAG-CA-TACAGAAT-TCATTCCCAGTCTAAGATCAGACTGGATTGAGGGATGTGGCA
57 CCAG--T-AGCCATTA-A-AGTGTC--T-GAAAT-GGGGA-C--ACTTTTTTCA--AATG-GTCA
* * * * * * ** * ** * * **
19704887 GC-ACATGCTGGGCT-CGGGCAT-GTGCTGGT-GCCT-CATTTTTCTTCGT-CGGGCGAGAATCA
107 -CAAAAT-CT-TG-TAC--ACTTCGAGTTTTTAG-CTGAATTTTT-TT-GTGCATGCCAAAAAAA
* ** * * * *** ** * *** * *
19704946 CT-GGA-GAAC-CTGACTGA-C-GGTATTGGGGTTCCGGTGA-TCGGGGGGT-CG-GAGGGTGTG
163 ATACAAGGATCAC-GTCT-ACCAAGT-TTGGGG--CC-AAAACTC----CTTCCGAAAAAATTTT
*** * *** * *** * ** ** * * * * * **** * * *
19705003 CGCACAT---GATGTGCGATGGGTGTTGGTACTTAGCCCT-TATATTGGCCCCCTA-TCCCTCAT
218 AAAAAATCCCGAACCGCAAAAAGT-TT--CA-AAAATCGTGAAAAATAGAAAACGAGT-CGTCTT
* *** * * * *
19705063 -CAAACCTCGAGAAC-TCAC---ACCCCCTTAA-AGAGCATT-TGA-GATTTTAC-AG--GT---
278 GC---CAT-GA-AACTTCACGTGA-AGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAA
* * * ** * *** ***** ** *
19705114 --TTGC--TGCCA-GTAGCCAT-T-AA-A-GTGTCTGAAATGGGGACACTTTTTTCAAAT-GGTC
336 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCT-AAA--CCCAC-CTACCACCCTATCGATC
*** * * *** * * * ** ** ** * ******* ** *
19705169 ACAAATTCTTGTACACTTTGAGT-T-TTTAGCTGAATTTTTTTGTACGCCAACAAAAATACAAGG
397 -C-ACGGCTTG--CGCATCCCGTCTCTCTGGCCG-A-CGTAGTGCCCGCCCACCCGCCCGCTCGT
* ***** * * * *** **** * * * *
19705232 ATCAAGTCTACCAAGTTTGGGGCCAAAAC-TCCTTC-TGAAAAAATTTTAAAAAATCTCGAACC-
456 TTC--GTC-GGTTGGCTT-AGG-C-ATACGGAGTTCAT--TCCCAGTCT--AAGATC-AG-ACCA
** *** * * * ** *** * ** * *
19705294 -ACAAAAATTTTC-G-A--A-AATCGTGAAAAATAAAAAACGAGTCGTCTTGCC-AT-GAAACTT
509 GACTGAGGGTTGCGGCAGCAGGATCG-GCAGCA-CGCAGA-G-GGGGAC---CCGATCG--A-TC
* ** * *** * * *** ** * * *** *** * * **
19705351 CACGTG-AAG-GCTTAAGGGACCAT-TGTATGAATTTAGAAGCCATAAAAATGGTAT--TGGCAT
564 CCCG-GCTTGCGCAT-CCCGCCCCTCTGGCCG-GCTGAG-CGCCCGCACGCTCGTTTCGTGGGTT
** * * ** * * * *
19705411 G-C--AGAAATATGAAGAGGTGCCTAAACCCA--CCAACCACCCTATC-GA-TCCACGGCTTGCG
625 GACTTAGGCATACG--GA-GT-TC-ATTCCCAGTCTAAGCA---TA-CGGAGTTCA----TT-CC
*** ** * * * * ** * *
19705469 CA-TCCT--G-TCTTTCTTG-CCGA-CGTAATGCCCGCCCGCCCGCCCGCT-CGCTCGTTTCATC
676 CAGT-CTAAGATCGGACCGGACCGAGGGT--TG--CGGCAG--CACATGCTGGGCTCG--GCAT-
* * * * *
19705527 AGTTGGCTTAGGCAT-ACGAACTTCATTC-CCAGTCTAAGATTGGACCGGACCGAGT-GTTACAG
731 -G-T-GC-T-GG--TGCCGTA-TT-TTTCTTC-GTC---G---GG---GCACC-A-TCG-T-C-G
* ** * * * ** ** * ******
19705589 CAGCAGGATCGGTAGTACGCAGAGGATGACCCGGCCAAACCTT-GACTTGC-GC-ATC-CCACCC
772 GAGCATCACCGG-AGAAC-CTGA--CCGA--CGG-C--A--TTGGGGTTCCGGCGATCGGGGGGG
** * * * * * **** *
19705650 CTCTG-GCCAGTTGATCGCCCGCACGCTCGTTTCGTGGGT--T-G-ACTTAGG--C--ATA-CGG
826 C-C-GAG-GGGGTG-T-GCGCACATGAT-GTGCGATGGGTGCTGGTACTT-GGCCCTTATATTGG
**** *
19705705 AGTTC-ATTCCC-AATC
884 CCCCCTA-TCCCTCATC
* * ** ** ** * *** * *
19705720 TAAGCATACG-GAGTTCATTCCCAGTCT-AAGATCGGA-TTG-GA-CCGA-AGGATGTGGCAGCA
1 -AAACCT-CGAGAACTCACACCCCCT-TAAAGA--GCATTTGAGATTTTACAGG-T-TTGCTGC-
* * *** * * * * * * * * *
19705779 CA-T-G-C-TT--GGCTCGGGCATGTGCTGGTGCCTCATTTTTC--TTCGTCGGGCGAGAATCAC
58 CAGTAGCCATTAAAG-T--GTC-TGAAATGGGGACACTTTTTTCAAATGGTC--AC-AAAATC-T
* * * * *** * *** **** * ** *
19705836 TGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCAGGGGGCCGAGGGGGGTGTGCGCGCAT
115 TGTA-CA-CT--TCG--AG-TTTTTAG--CTGAATTTTTTTGTG-C-A--------TGC-CAAAA
* ** * * * ** ** ** * * *** * ** ** **
19705901 GATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTA-TCCCT-C-ATCAAACCTCG
160 AAAATAC-AAGGAT-CACGT-C-TACCAAGT-T-TGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * *** * ** * * *** * *
19705963 AGAACTCAC--ACCCCCTTAAG----GAGCAT-TTG--AGATTTTACA-G-GT-TTGC-TGCCA-
219 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT-CTTGCCAT
* * * * * * * * ** **
19706014 GTAGC--CA-TTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAAATGGAC-A--CA-AAATCTTG
283 GAAACTTCACGTGAAG-G-CT-TAA--GGGACCA-TTGTAT-GAATTTACAAGCCATAAA-AATG
* *** * * * *** * *** * * ** * * * *
19706071 TACACTTCGAGTTTTTGGCTGAATTTTTTTG-TGCATGCCAAAAAAAATACAAGGATCATGTCTA
340 -GCA-TT-G-G---CACGCAGAAATATGAAGATG--TGCCTAAACCCA-CCTACCACCCTATCGA
* * * **** * * *** * ******** * *
19706135 -CCA-AGTTTGGGGCCA-AAAAT-ACT-T--CCAAAAAAATTTTAAAAAATCTCGGACCG-TAAA
395 TCCACGGCTT-GCG-CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCA-C-CCGCCCGCT---
* ***** *** *
19706192 AAGTTTCAAAAATCATGAAAAATAGAG-A-AC-GAGTCGTC-TTGCCATGAAACTTCACGTGAAG
453 -CGTTTCGTCGGT--TG--GCTTAG-GCATACGGAGT--TCATTCCCA-G-----T--C-T-AA-
* * *** * ** * *
19706253 GCCTAAGGGACCATTGTA-T-AAATTTACAGGCCATAAAAATGGTATTGGCATGCCTAAACCCA-
499 G-ATCA--GACCA--G-ACTGAGGGTTGC-GG-C---AGCA-GG-ATCGGCA-G-C---ACGCAG
****** * * * * * * *
19706315 CTTACCACCCCATCGA-CCCACGGCTTGCGCATCCCGTCTCTCTGGCTGAC-GTAGTGCCCGCCC
546 AGGGGGACCCGATCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG-AGCGCCCGCAC
* ** * * * * *** * * *
19706378 GCTCG---C--CGG--CCCGTACGC-T-C-G-TTTGA-TCGGTTGGCTTAGGCATATGGAGTTCA
609 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CCAGTC-TAAGCATACGGAGTTCA
* * * * * * * * * *
19706431 TTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGATCGAT-AGCAC-GCAGAGGG
672 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA-CAT-GCTGGGCTCGGC--ATGT
* *** ** * * *
19706494 GACTCG-GCCG-ATCCTCGGCTTACGCATC-CCGC-CCCTCTGGCCGACTGAGCACCTGTACGCT
733 G-CTGGTGCCGTAT--TTTTCTT-CG--TCGGGGCACCATC--GTCG---GAGCA----T-CAC-
* *** * * * * * *** * * * *
19706555 CGTTTCGTG-GTTTGACTGA-GGCATACGGAGTTCATTC-CCAATC---TAAGCATGTGGAGTTC
781 CG----GAGAACCTGACCGACGGCAT-TGGGGTTC---CGGCGATCGGGGGGGC-CGAGGGGGT-
* * * * * *
19706614 ATTCCCAGTCTAAGATCGAAT-CGGACTGAGGGTTGC-GGTATCACATGCTGGGCTTGGTCATGT
836 GTGCGCA--C-ATGAT-G--TGC-GA-T--GGG-TGCTGG--T-AC-T--TGGCCCT--T-A--T
* ** * **
19706677 ACTGGTGCCGTAT---TTTTC
879 ATTGGCCCCCTATCCCTCATC
**** ** * ** *
19706695 TTTGCT-G-G----GGCA--CCATTATCGGAGCATCGTTGGAGA----AC-------CTGACCGG
1 AAACCTCGAGAACTCACACCCCCTTA-AAGAGCAT--TT-GAGATTTTACAGGTTTGCTG-CCAG
*** * * * ***** *** ** *
19706741 TAG-CATTGGGGT-TCCGACGATCGGGGGGGC-CGGGGGGT-GTGTGCG-CACATGATGTATG-A
61 TAGCCATTAAAGTGTCTGA-AAT---GGGGACAC-TTTTTTCAAATG-GTCACAAAATCT-TGTA
*** * ** * * **** * ** ** *
19706800 TGGGTGCTG-GTACTTGGC--ACTTAGACTG-GCCCCCTATCCCTCATCAAACCT-CAAGAACTC
119 -CACTTC-GAGTTTTTAGCTGAATTTTTTTGTG----C-AT-GC-CAAAAAAAATACAAGGA-T-
* * ** **** * * * * * * ***
19706860 ACACCCCTTTAAAAAGCATTTGAGATTTTATAAGT-TTGTCGCCAGTAGCCATTAAAGTGTCTGA
173 -CA--CGTCTACCAAG--TTTG-G-GGCCAAAACTCCT-T--CC-G-A---A-AAAATTTTAAAA
*** ****** ** * * * *****
19706924 AATGGGGACACTTTTTTCGAAGGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
222 AATCCCGA-AC--CGCAAAAAGTTTCA-AAAATCGTG-A-A----AA----ATAG--AAAACGAG
* * * * * * * * *
19706989 TCGTGCATGCCAAGAAAAATACAACGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAA
271 TCGT-CTTGCCATG-AAACTTC-ACG-TGAAGGCT--TAA----GGGACC---A----TT--GTA
** * * ** *** ** **
19707054 AAAATTTTTAAAAAATCCTGAACCGTAAAAA--GTTTTAAAAATCATGAAAAATAAAAAACGAGT
317 TGAA--TTT--ACAA----G--CCATAAAAATGGCATTGGCACGCA-G--AAAT-ATGAA-GA-T
* * * * * *
19707117 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTAT-GAATTTACAAGCCATAAA
366 -G---TGCC-T-AAAC--C-C----A--CCT-A-CCACC---CTATCG-A--TCCACGGC-T---
* * * * * *
19707181 AATGGCATTGACATGCAGAAATATGTAGATGTGCCTAAGCCCACCTAGCACCCTATCGATCCACG
404 --T-GC---G-CATCCCG---TCTCT--CTG-GCC---G---ACGTAG-------T-G--CC-C-
* * * * * * * * * *
19707246 GCTTTCGCATCCCGTCTCTCTGGCTGGCGTAGT-GCCCGTCCGCCCGCTTGCCTTCCCGCTCGTT
438 GC---C-CA-CCCG-C-C-C--GCT--CGT-TTCGTCGGT-TG-GC-TTAGGCATAC--------
* ** * *
19707310 TCATCGGTTACCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAAGGGTTG
479 ----------------------GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT-TG
** *** ** **
19707375 TAGCAGCAGGATCTATAGCACGCAGAGGGGGACCCGCCCGATCCTTGGCTTGCGCATCCCGCCCC
521 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* * ** * *
19707440 TCTGGTCGGCTGAGCGCCTGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCACTCCC
586 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* **
19707505 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAACAGCACA
651 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
* * * *
19707570 TGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCG
716 TGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
* * * * * * *
19707635 TCGAAGAACCTGACCGGCGACATTGGGCTTCCGGTGATCGGGGGGGCC-AGGGGGTGTGTGCACA
780 CCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACA
* * *
19707699 TGATGTGGGAAGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATC
845 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
** *
19707754 AAACCTTTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19707819 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
19707884 TTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTCGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * **
19707949 AAACTCCTTCCGAAAAAATTTTAACAAATCTCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* *
19708014 AGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAA
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
19708079 AAGCCGTAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCGAAACCCACCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
19708144 TCGATCCACGGCTTGCGCATACCATCTCTCTGGCC-AGCGTAGTGCCCGTCTGCCCTCCCGCCTG
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTG-CC--C-GCCCACCCGCCCG
* * *
19708208 CTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
451 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
* * * * * * *
19708273 GGTTGTGGCAGTAGGGTCGGCGGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCTC
516 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC
*
19708338 GCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
581 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *** *
19708403 TTCCCAGTCTAAGCATACGGAGTTGATTCTCA-TCTAAGATCCGAATAGACCGAGGGTTGCAGCA
646 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* * ** * * **
19708467 GCAAATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAAAG
711 GCACATGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAG
** * ** * *
19708532 CATCACCGGAGAACCTGACCGGTGGCACTGGGGTTCCGATGATCGGGGTGGCCGGGGGGGTGTGC
775 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGC
* *
19708597 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTTATCCCTCATC
840 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
19708657 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCA
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19708722 ATTAAAGTGTCT-AGAATGAGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
66 ATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
19708785 TTTGGCTGAATTTTTTTGTGC-TAGCGAATAAAAATACAAGGATCACGTCTACCAAGTTT-GGGC
130 TTTAGCTGAATTTTTTTGTGCAT-GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * **
19708848 CAAAGCTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAA
194 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * * *
19708913 ATAGAAAACGAGTAGTCTTGCCACGAAACTTCACGTGAAAGCTTAAGGGGCCATTGTATGAATTT
259 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** *
19708978 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTTACCACCC
324 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
19709043 TATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCATCC
389 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCG------C
* * * * * *
19709108 ATCCACTCATTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGATCGGG
448 --CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * ** * * *
19709172 CCGAGGGTTAG-GGCAGTAGGATCGGTAGCACCCAGAGCAGGACCCGGTCGATCCCCGGCTTACA
511 CTGAGGGTT-GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* ** * *
19709236 CATCCCACCCCTCTGAACGGCTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACAG
575 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----T--AG
*
19709301 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAG
632 -G--------CA---T-A-C----GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
19709366 TCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGTTGGGCCCGGGCATGTGCTGGTGCCA
679 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCG
* * ** * * * *
19709431 CATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGATCGGCGGCACTGGGT
743 TATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGG
* * *
19709496 TTACGGCGATCGGGGGGGCCGGCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTG
808 TTCCGGCGATCGGGGGGGCC-G-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
19709561 GCCCTTATATTGGCCCCCTATCCCTAATC
871 GCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19709590 AAACCTCGAGAACTCACACCCCATTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
19709655 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
19709720 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC-CGTATACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
19709784 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
*
19709849 AGAAAACTAGTCGTCTTGCCATGAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTT
261 AGAAAACGAGTCGTCTTGCCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTT
* * * *
19709914 AAAAGCCATAACAATGGCATTGGCAATGCAGAAAATGTGAAGATGTAGGCCTAAAACCCACCTAC
324 ACAAGCCATAAAAATGGCATTGGC-ACGCAG-AAATATGAAGATGT--GCCT-AAACCCACCTAC
* * * * * * *
19709979 CACCCTATCGATCCACGGCATACGTATGCTGTCTCTCTGGCTGGCGTAGT----G----CCCGCC
384 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCC
* * * * * * **
19710036 CGCTCGTGTCGTAGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCA
449 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
** * * * ** * *
19710101 AGGGTTGACGATAGTAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCCACTTACGTAT
514 AGGGTTG-CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
*
19710166 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
578 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
** *
19710231 TCATTCCCAGTCTAAGCATACGGAGTT-A-GACCAGTCT-AGAGTCGG-CCGGACCAATGGGTT-
643 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCGGACCGA-GGGTTG
* **
19710291 ---CAGCACAT-CGTGGGCTCGGGCATGTGCTGGGAGCACACA-TTTTCTTCGTCGGGGCACCAT
706 CGGCAGCACATGC-TGGGCTC-GGCATGTGCT-GGTGC-CGTATTTTTCTTCGTCGGGGCACCAT
* ** *
19710351 CGCCGGAGCATCAACCGGAGAACCTGACCGAC-GCA-T-GGGTT-CAACGATC---GGGGTCG-G
767 CGTCGGAGCATC-ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAG
* * *
19710408 GGGTTGTGCTCACATGATGGTGCGAT-GGTGCTGGTACTTGGCCCCTATATT-------TATCCC
831 GGGGTGTGCGCACATGAT-GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
19710465 TCATC
895 TCATC
* *
19710470 AAA-CTCGAGAACTCA-A-ACCCTT-AAGAG-ATTTGAGATTTAACA-GTTTGCTGCCAGT-GCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19710528 ATT-AAGTGTCTGAAATGGGGACACTTATTTTCAAATGGTCAGCAAAATGTTGTACACTTTGAGT
66 ATTAAAGTGTCTGAAATGGGGACACTT-TTTTCAAATGGTCA-CAAAATCTTGTACACTTCGAGT
* * * * * ***
19710592 TTTCAGCTGAATTTTTTTATGCATGCCAACAAAAATACTAGGATCATGTCTACCAAGTTTGTTTC
129 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
** ** * * * *
19710657 TGAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAGGTTTCGAAGATCATGAAAA
194 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* *
19710722 ATAGAAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTT
259 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
19710787 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAGCCCACCTACCATCC
324 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
19710852 TATCGATCCACGGCTTGCGGATCCCGTCTCTTTGGCCGTCGTAGT----G----CCCGCCCGCTC
389 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTC
* * * *
19710909 GTTTCGTCGATAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACTGAGGGT
454 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
* * * * * * * *
19710974 TGTGGTAGCAGGATCGGTAGGACACAAAGGGGGACCC-AGTTGATCCCCGGCTTGCGCATCCCAC
519 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGC
* * *
19711038 CCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
583 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
19711103 CCCAG--T---C-TA---AG---A-T--C-G----A-AT-----CGGACCGAGGGTTACGGCAGC
648 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
* *
19711142 ACATGCTGGGCTCAGGTAT-TGGCTGGTGCCGTATTTTTCTTCATCGGGG---CA----C----C
713 ACATGCTGGGCTC-GGCATGT-GCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
* * * *
19711195 ATCACCGGAGAACCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCG
776 ATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCG
** * * *
19711260 CACATGATGTATGTTGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCTTC
841 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19711319 AAACCTTGAGAACTCACACCCCCTTGAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
19711384 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * *
19711449 TTGGCTGAATATTTTTGTGCATGCCAACAATAATACGAGGATCACGTTTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * ** *
19711514 AAACTCCTTTCAAAAAAATTTTAAAAATTCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAA
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* *
19711579 AGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
**
19711644 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
19711709 TCGGTCCACGGCTTGCGCATCCCGTCACTCTGGTCGGA-GTAGTGCACGCCCGCCTGCCCGCCCG
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGACGTAGT----G--C-CC-GCCCACCCG
* * * *
19711773 TCCGCTCGTTTCGTCGGTTGGGTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACC-GAA
447 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A
* * * * * *
19711837 CTGAGGGTTGCGGCAGCAAGATCGACAGCACACAGAGGGGGACCCAACCGATCCCCGGCTTGTGC
511 CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * *
19711902 ATCTCGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
576 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
19711967 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTG
641 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * *
19712032 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGT
706 CGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGT
** * * * * * ** *
19712097 CGGAGCATCGTCGGAGAACTTGGCCGGCGGCATTGGGGTTCCGACCATCGGGGGGTTCGGGTGGG
770 CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAG-GGG
* * *
19712162 GTGTGCGCACATGATGTCCGATGGGTGCTGGTAGTTGGCCCTTATATTGG-CCCCTATCGCTCAT
834 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
19712226 C
899 C
19712227 AAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19712291 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
19712356 TTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
19712421 AAAGTCCTT-GGAAAGATTTTTAAAAATTCCCGCACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
19712485 AAAAAACGAATCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
19712550 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
19712615 TCGATCCACGACTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCACTCGT
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGT
* * * * * *
19712680 TTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGTGGGTTG
456 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* ** * * ** * * *
19712745 TGATAGCAGGATCGGCAGCACACGGAGGGGGACCCGGCCAATCCTCGGCTTGCGCATCCTGCCCC
521 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
**
19712810 TCTGGCCTACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCC
586 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * *
19712874 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCTCA
651 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
* * * * ** * *
19712939 TGCTGGGCCCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGAACCATCACCGGGGCATCT
716 TGCTGGGCTCG-GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
* * * ** * * * * *
19713004 CCGGAGAACCTAACCGAC-ACTATTAGTTTTACGACGATCGAGGTGGCCG-GGAGGTGTGCGCAC
780 CCGGAGAACCTGACCGACGGC-ATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCAC
19713067 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
844 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19713123 AAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG-TGCCAGTAGCT
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19713187 ATTAAAGTGTTTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * *
19713252 CTAG-TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTGGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
*
19713316 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
19713381 AGAAAATGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
19713446 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
19713511 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGC
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCG----CCCGC
* * ** * *
19713576 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTCCTAGTCTAAGATTGGATCAGACCGAGG
452 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
** * * * *
19713641 GTCACAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGG-TTTCTGCATCCC
517 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC-GCATCCC
* * * *
19713705 ACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA
581 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
19713770 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGTTTACGGCA
646 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* *
19713835 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA---TC---G
711 GCACATGCTGGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * *
19713894 ---CA--GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGGTGTGC
775 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGC
* * *
19713954 ACACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATC
840 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19714014 AATCCTTGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19714079 ATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
19714144 TTAGCTGAATTTTTTTGTGCATGCCAACAAGAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * **
19714209 CAACACCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCATAAATAATGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* *
19714274 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
19714339 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACAACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
19714404 TTGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCGACATAGTGCCCG----CCCGCCCGCTTGT
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGT
* * ** * *
19714465 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAAGATTGGACCGGACCGAGGGTTG
456 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* * * * * * * * **
19714530 TGGTAGCAAGAT---CAGCAC-C------CGA-CCGATC---CCCAGGCATGCTCGTTTCG----
521 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* ** * * * * * * *** * *
19714577 T-GGGTTGACTTAG-GCATACGGA-GTTC-ATTC-CCAG-T--C-TAAGCATACGAAGTTCATT-
586 TCTGGCCGGCTGAGCGC--CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
19714632 CC---C--AG--T------------------CTAAGATCGGACCGGACCGAGGGTTGCGGTAGCA
649 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* **
19714672 CATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCAT
714 CATGCTGGGCTCG-GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* * ** * * *
19714737 CACCGGAGAACTTGACCGATC-GCATTGGGGTTCTGATGATCGAGGGGGCCGGGGGGGTTTGCGC
778 CACCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGC
* * * *
19714801 AAATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATACCTCATC
842 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
19714859 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
19714924 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
19714989 TTGGCTGAATATTTTTGTGCATGCCAACAATAATACAAGGATCACGTTTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * ** * ** *
19715054 AAACTCCTTTCGAAAAAATTTTAAAAATTCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAA
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
*
19715119 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
19715184 AAGCCATAAAAATGGCATTGGTATGCAGAAATATAAAGATGTGCCTAAACCTACCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
19715249 TCGATCCACGGCTTACGGATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCCTGC
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-C-CGCCCACCCGCCCGC
* * * *
19715314 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA-TCTAAGATCAGATCGGATTGAGG
452 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
** * * * ** * * * *
19715378 GTTGCTACAGCAGGATCGACAGCGCACAGAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCAG
517 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * * *
19715443 CCCCTCTGGCCAGCTGAACGCCCACACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCAT
582 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
19715508 TCCCAATCTAAG
647 TCCCAGTCTAAG
19715520 ATTGGGCTGG
Statistics
Matches: 18238, Mismatches: 3679, Indels: 2901
0.73 0.15 0.12
Matches are distributed among these distances:
833 1 0.00
834 98 0.01
835 6 0.00
836 1 0.00
837 6 0.00
838 7 0.00
839 1 0.00
840 1 0.00
841 10 0.00
842 40 0.00
843 9 0.00
844 7 0.00
845 498 0.03
846 20 0.00
847 23 0.00
848 3 0.00
849 16 0.00
850 12 0.00
851 1 0.00
852 34 0.00
853 53 0.00
854 16 0.00
855 304 0.02
856 25 0.00
857 23 0.00
858 2 0.00
859 2 0.00
860 16 0.00
861 3 0.00
862 3 0.00
863 5 0.00
864 1 0.00
865 6 0.00
866 21 0.00
867 116 0.01
868 121 0.01
869 4 0.00
870 3 0.00
871 210 0.01
872 35 0.00
873 47 0.00
874 116 0.01
875 109 0.01
876 13 0.00
877 29 0.00
878 12 0.00
879 485 0.03
880 38 0.00
881 357 0.02
882 705 0.04
883 575 0.03
884 446 0.02
885 267 0.01
886 284 0.02
887 435 0.02
888 446 0.02
889 52 0.00
890 106 0.01
891 284 0.02
892 94 0.01
893 305 0.02
894 72 0.00
895 384 0.02
896 391 0.02
897 1041 0.06
898 1112 0.06
899 463 0.03
900 1201 0.07
901 893 0.05
902 964 0.05
903 501 0.03
904 205 0.01
905 290 0.02
906 231 0.01
907 196 0.01
908 94 0.01
909 125 0.01
910 9 0.00
911 4 0.00
912 10 0.00
913 2 0.00
914 17 0.00
915 15 0.00
916 10 0.00
917 8 0.00
918 6 0.00
919 5 0.00
920 4 0.00
921 6 0.00
922 1 0.00
924 5 0.00
925 30 0.00
926 61 0.00
927 89 0.00
928 4 0.00
929 12 0.00
930 49 0.00
931 147 0.01
932 17 0.00
933 178 0.01
934 179 0.01
935 51 0.00
936 39 0.00
937 33 0.00
938 31 0.00
939 39 0.00
940 35 0.00
941 67 0.00
942 38 0.00
943 20 0.00
944 23 0.00
945 37 0.00
946 23 0.00
947 31 0.00
948 49 0.00
949 45 0.00
950 59 0.00
951 47 0.00
952 54 0.00
953 51 0.00
954 50 0.00
955 37 0.00
956 37 0.00
957 33 0.00
958 54 0.00
959 44 0.00
960 35 0.00
961 49 0.00
962 33 0.00
963 50 0.00
964 45 0.00
965 52 0.00
966 31 0.00
967 41 0.00
968 29 0.00
969 34 0.00
970 28 0.00
971 19 0.00
972 26 0.00
973 9 0.00
974 14 0.00
975 5 0.00
976 9 0.00
977 11 0.00
978 9 0.00
979 4 0.00
980 7 0.00
981 17 0.00
982 16 0.00
983 13 0.00
984 2 0.00
985 8 0.00
986 9 0.00
987 7 0.00
988 1 0.00
989 3 0.00
990 1 0.00
991 1 0.00
992 3 0.00
993 3 0.00
994 4 0.00
995 5 0.00
996 5 0.00
998 4 0.00
999 1 0.00
1001 1 0.00
1002 4 0.00
1003 5 0.00
1004 3 0.00
1005 5 0.00
1006 9 0.00
1007 2 0.00
1008 9 0.00
1010 3 0.00
1012 7 0.00
1014 4 0.00
1015 1 0.00
1016 10 0.00
1017 3 0.00
1018 5 0.00
1022 1 0.00
1024 373 0.02
1025 546 0.03
1026 567 0.03
1027 638 0.03
1028 479 0.03
1029 650 0.04
1030 537 0.03
1031 489 0.03
1032 548 0.03
1033 478 0.03
1034 349 0.02
1035 423 0.02
1036 496 0.03
1037 452 0.02
1038 351 0.02
1039 414 0.02
1040 420 0.02
1041 312 0.02
1042 412 0.02
1043 346 0.02
1044 303 0.02
1045 351 0.02
1046 326 0.02
1047 293 0.02
1048 538 0.03
1049 194 0.01
1050 370 0.02
1051 325 0.02
1052 386 0.02
1053 183 0.01
1054 253 0.01
1055 536 0.03
1056 285 0.02
1057 240 0.01
1058 238 0.01
1059 313 0.02
1060 387 0.02
1061 274 0.02
1062 195 0.01
1063 247 0.01
1064 152 0.01
1065 241 0.01
1066 261 0.01
1067 206 0.01
1068 272 0.01
1069 172 0.01
1070 121 0.01
1071 229 0.01
1072 358 0.02
1073 119 0.01
1074 104 0.01
1075 118 0.01
1076 110 0.01
1077 292 0.02
1078 126 0.01
1079 149 0.01
1080 163 0.01
1081 202 0.01
1082 112 0.01
1083 286 0.02
1084 60 0.00
1085 141 0.01
1086 39 0.00
1087 128 0.01
1088 98 0.01
1089 56 0.00
1090 50 0.00
1091 63 0.00
1092 61 0.00
1093 48 0.00
1094 54 0.00
1095 170 0.01
1096 85 0.00
1097 40 0.00
1098 48 0.00
1099 29 0.00
1100 14 0.00
1101 28 0.00
1102 38 0.00
1103 34 0.00
1104 42 0.00
1105 19 0.00
1106 23 0.00
1107 21 0.00
1108 18 0.00
1109 24 0.00
1110 31 0.00
1111 14 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGT
TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
TGCTGGGCTCGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
Found at i:19695625 original size:185 final size:182
Alignment explanation
Indices: 19695310--19695727 Score: 516
Period size: 185 Copynumber: 2.3 Consensus size: 182
19695300 TAGGCATACG
* * * * * *
19695310 GAGTTCATTCCTAGTCTACGATCGGACCAGACTGAAGGTTACAGCAGCAGGATCGATAGCACGTA
1 GAGTTCATTCC-AGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAAGATCGACAGCACGTA
* * * * *
19695375 GAGAGGGACCCGATCGATCCCCAACTTGCACATCCCGCCCCTTTGGCCGACTGAGCACTCGCACG
65 GAGAGGGACCCGACCGATCCCCAACTTACACATCCCGCCCCTCTGGCCAACTGAGCACCCGCACG
*
19695440 CTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTGAGCATATA-
130 CTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTC-AAGCA-A-AC
* * * *
19695495 GAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAAGATTGGCAGCACGTA
1 GAGTTCATTC-CAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAAGATCGACAGCACGTA
* * * * * *
19695560 GAGGGGGACCCGCCCGATCCCCAGCTTACGCATCCCTCCCCTCTGGTCAACTGAGCACCCGCACG
65 GAGAGGGACCCGACCGATCCCCAACTTACACATCCCGCCCCTCTGGCCAACTGAGCACCCGCACG
* * *
19695625 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCAAGCAAAC
130 CTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCAAGCAAAC
*
19695678 GAAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGCGGCAGCA
1 G-AGTTCATT-CCAGTCTAAGATCGGACCGGACT-GAGGGTTGCAGCAGCA
19695728 CATGCTGGTC
Statistics
Matches: 200, Mismatches: 28, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
182 1 0.00
183 3 0.01
184 45 0.22
185 150 0.75
186 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (182 bp):
GAGTTCATTCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAAGATCGACAGCACGTAG
AGAGGGACCCGACCGATCCCCAACTTACACATCCCGCCCCTCTGGCCAACTGAGCACCCGCACGC
TCGTTCCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCAAGCAAAC
Found at i:19696580 original size:26 final size:26
Alignment explanation
Indices: 19696544--19696593 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19696534 GTTGACTTAG
19696544 GCATACAGAGTTAATTCCCAGTCTGA
1 GCATACAGAGTTAATTCCCAGTCTGA
* *
19696570 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTAATTCCCAGTCT
19696594 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTGA
Found at i:19698254 original size:26 final size:26
Alignment explanation
Indices: 19698218--19698270 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19698208 GTTGACTTAG
*
19698218 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGCCTAA
* * *
19698244 GCATATGGAGTTCATTCTCAGCCTAA
1 GCATACGGAGTCCATTCCCAGCCTAA
19698270 G
1 G
19698271 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGCCTAA
Found at i:19699148 original size:26 final size:26
Alignment explanation
Indices: 19699118--19699170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19699108 GTTGACTTAG
*
19699118 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19699144 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19699170 G
1 G
19699171 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19700932 original size:26 final size:26
Alignment explanation
Indices: 19700895--19700947 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19700885 GTTGACTTAG
*
19700895 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19700921 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19700947 G
1 G
19700948 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19701459 original size:883 final size:885
Alignment explanation
Indices: 19691260--19695534 Score: 5133
Period size: 897 Copynumber: 4.8 Consensus size: 885
19691250 GCCCCTGGTG
* **
19691260 AAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAAAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
19691325 ATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGACTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
19691390 TTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTAGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** ** * * * * *
19691455 AAACTCTTTTTGAAAAAATTTTAAAAAATCTTGAAGCACAAATAGTTTCAAAAATCTTGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAAT
* * *
19691520 AGAAAATGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
19691585 AAGCTATAAAAATGGCATTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCT
326 AAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * ** * *
19691649 ATCCATCCACGGCTTGGGCATCCCGTCTCTCTGGCTGGCATGGCGCCCGCCCACCTGCCCGCCCG
391 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC--GTAG--TGCCCA----CCCACCCG
* * * **
19691714 CTCGTTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCCAG
448 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
* * * * * * ** *
19691779 GTTTACAGCAACAGGATTGGCAGCACGTAGAGGGAGACCCGGTCGATCCCCGGCTTGCGCAACCC
513 GGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * * * *
19691844 GCCCCTTTGGCCGGTTGAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
578 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * * * *
19691909 TTCCTAGTCTAAGCATACAGAGCTCATTTCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCA
643 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCA
* *
19691974 GCACAGGCTGGGCTCGGGCATGTGCTGGTGCCAG-ATTTTTCTTCGCCGGGGCACCATCATCGGA
708 GCACATGCTGGGCTCGAGCATGTGCTGGTGCC-GTATTTTTCTTCGCCGGGGCA-C--CATC---
* * * *
19692038 GCATCACTGGAGAACCTGATCGACGGCATTCGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGC
766 G--T--C-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGC
* * * *
19692103 GCACATAATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGG-CCCGTATCCTTCATC
826 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19692162 AAACCTCGAAAACTCACACCCTCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
19692227 ATTAAAGCGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGATT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
19692292 TTAGCTTAATTTTTTTGTGCCTGCAAAAAAAAAAAATACAAGAATCATGTCTACCAAGTTTGGGG
131 TTAGCTGAATTTTTTTGTGCATGC---CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * ** *
19692357 CCGAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCCAAAATCATGCAA
193 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAA
* *
19692422 AATAGAAAACTAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
258 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
19692487 TACAAGCCATAAAAATGGTATTGGCA-TGCAGAAATATGAAGATGTGCCAAAACCCACCTACCAC
323 TACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * ** *
19692551 CCTATCGATCCACGGCTTGCACTTCCCGTTTCTCTGGCCAGCGTAGTGCCTGCCCGTCCGTCAGC
388 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCC-ACC--C-GC
* *
19692616 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGG
449 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
* * * * * * * * *
19692681 GTTACGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCTGGCTGATCCCCGGCCTACGCATCCCA
514 GTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * *
19692746 CCACTCTGGCCGGCTGAGCGCCCGCATGCTAGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
579 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* ** *
19692811 TCCCAGTCTAAGCATACAGAGTTCATTCATAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAG
644 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAG
* * * ** **
19692876 CACATGCTGGGCTC-AGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCCCCAAAG
709 CACATGCTGGGCTCGA-GCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAG
* * *
19692940 AACCTGACC-GAGACATTGGGGTTCCGGCGATC-GGGGGGCCGGGGAGGGTGTGCGCACATGATG
773 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATG
19693003 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
836 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19693053 AAACCTTGAGAACTCAAACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * *
19693118 ATTAAAGTGTCTAAAATTGGGACACTTTTTTCAATTGGTTACAAAATCTTATACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
19693183 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
19693248 AAACTCCTTCCAAAAAAATTTCAAAAAATCCCGAACCCCAAAAAGCTTTGAAAATCATGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAAT
* * * *
19693313 GGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAATGCTTAAGGGACCATTGTATTAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
19693378 AAGCCATAAAAATGGCATTGGCAC-GTAGAAAGATGAAGATGTGCCTAAACCCACCTATCACCCT
326 AAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** * *
19693442 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGAAGGTGTAGTGCCCGCCCACCCGCCCGCTCG
391 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCACCCACCCGCTCG
* * * *
19693507 TTTCGTCGGTTTGCTTAGGCATACAGAGTTTATTCCCAGTCTAAGATCAGATCAGACTGAGGGTT
452 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* * * * * * * *
19693572 GCGGTAGCAAGATTGGCAGCATGCAGAGGGGGACCCGCCCGATCCCTGGCTTGCGCATCCCTCCC
517 GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * *
19693637 CTCTGGTCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
582 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
19693702 CATTC-AAGCAAACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAC
647 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAC
* * * **
19693766 ATGCTGGTCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATTGTCGGAGCATC
712 ATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCA---TC---G--T-
* * * * **
19693831 ACTGGAGAACCTGACCGACGGCATTAGGGTTCAGGCGATCGGGGGGGCCACGGGGTGTGCGCACA
768 -C-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACA
* * * *
19693896 TGATGTGCGATGGGTGTTGGTACTCGGCCCTTATATTGGCCCTCC-ATTCCTGATC
831 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CCTATCCCTCATC
* * *
19693951 AAACCTAGAGAACTCACACCTCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
19694016 ATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
19694081 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
19694146 AATCTCC-TCCGAAAAAAATTTAAAAAATCCCGAACTGCAAAGAGTTTCAAAAATCGTGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAAT
* *
19694210 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
19694275 AAGCCATAAAAATGGCATTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCT
326 AAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
19694339 ATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCATCTGCCCGCTCG
391 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCA----CCCGCTCG
* **
19694404 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATTGGACCAGACTGAGGGTT
452 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
** *** * * * * *
19694469 GTGGCAGCAGGATCAATAGCACGCAGAGAGGGACCCGATCGATCCCCAGCTTCCACATCCCGCCC
517 GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * * * * *
19694534 CTCTGGTCGACTGAGCGCTCGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTAATTCC
582 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * ** *
19694599 CAGTCTGAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGCATTGCGGCAGCAC
647 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAC
* * * *
19694664 ATGCTTGGCTC-AGGCATGTGCTCGTGCCATATTTTTCTTCACCGGGGCACCATCGCAGGAGCAT
712 ATGCTGGGCTCGA-GCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCAT--C----G--T
* ** *
19694728 CACAGGAGAACCTAACCGGCGGCATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGGTATGCGCAC
768 --C-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
* *
19694792 TTGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCC-CATC
830 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATC
*
19694848 AAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
19694913 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
19694978 TTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
19695043 AATCTCC-TCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAGAGTTTCAAAAATCGTGAAAAAT
196 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAAT
*
19695107 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCA---T-TG----T--
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
19695162 -----AT-AAAATGGCATTGGCAC-GCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCT
326 AAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
19695220 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCTGCCCGCCCGCTCG
391 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-ACCCACCCGCTCG
* * * * *
19695285 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTACGATCGGACCAGACTGAAGGTT
452 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* ** * * * ** *
19695350 ACAGCAGCAGGATCGATAGCACGTAGAGAGGGACCCGATCGATCCCCAACTTGCACATCCCGCCC
517 GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * * * *
19695415 CTTTGGCCGACTGAGCACTCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTAATTCC
582 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* ** * * *
19695480 CAGTCTGAGCATATAGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTT
647 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
19695535 GCAGTAGCAA
Statistics
Matches: 2961, Mismatches: 362, Indels: 121
0.86 0.11 0.04
Matches are distributed among these distances:
881 329 0.11
882 2 0.00
883 1 0.00
884 2 0.00
885 4 0.00
887 97 0.03
888 430 0.15
889 23 0.01
890 62 0.02
891 154 0.05
892 6 0.00
893 9 0.00
894 1 0.00
895 1 0.00
896 2 0.00
897 751 0.25
898 405 0.14
899 21 0.01
900 11 0.00
901 271 0.09
902 140 0.05
903 2 0.00
905 237 0.08
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (885 bp):
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCACCCGCTCGTTTC
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAG
CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGC
TGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
Found at i:19701818 original size:26 final size:26
Alignment explanation
Indices: 19701782--19701834 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19701772 GTTAACTTAG
19701782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
19701808 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19701834 G
1 G
19701835 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19702709 original size:26 final size:26
Alignment explanation
Indices: 19702680--19702732 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19702670 GTTGACTTAG
19702680 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19702706 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19702732 G
1 G
19702733 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19704505 original size:26 final size:26
Alignment explanation
Indices: 19704467--19704517 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19704457 CTGACTTAGG
19704467 CATACGGAATTCATTCCCAGTCTAAC
1 CATACGGAATTCATTCCCAGTCTAAC
* * *
19704493 CATATGGAGTTCATTCCCTGTCTAA
1 CATACGGAATTCATTCCCAGTCTAA
19704518 GATCGGATGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGAATTCATTCCCAGTCTAAC
Found at i:19704847 original size:26 final size:26
Alignment explanation
Indices: 19704808--19704860 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19704798 GTTGACTTAG
19704808 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19704834 GCATACAGAA-TTCATTCCCAGTCTAA
1 GCATAC-GAAGTTCATTCCCAGTCTAA
19704860 G
1 G
19704861 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19704928 original size:342 final size:342
Alignment explanation
Indices: 19704280--19704930 Score: 877
Period size: 342 Copynumber: 1.9 Consensus size: 342
19704270 CCGCCCTCCC
* * * *
19704280 GCCCTCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCTCAGTCTAAGATCAGGTTGAA
1 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGTCGAA
* * * * * *
19704345 CCGAGGGTTGCGGCAGTAAGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGC
66 CCAAGGGTTGCGGCAGCAAGATCAGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGC
* * *
19704410 ATCACGCCCCTCTGGCCGACTGAGCGACCGCACTTTCGTTTTGTGGGCTGACTTAGGCATACGGA
131 ATCACGCCCCACTGGCCGACTGAGCGACCGCACTCTCGTTTCGTGGGCTGACTTAGGCATACGGA
** * * * *
19704475 ATTCATTCCCAGTCTAACCATATGGAGTTCATTCCCTGTCTAAGATCGGATGGGATCGAGGGTTG
196 ATTCATTCCCAGTCTAACCATACAGAATTCATTCCCAGTCTAAGATCAGATGGGATCGAGGGATG
*
19704540 TGCAGCACATGCTTGGCTCGGGCATGTACTGGTGCCGTATTTTTTCTTCACCGGGGCACCATCGC
261 TGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTTCTTCACCGGGGCACCATCGC
19704605 AAAAAGTTCACCTGCCT
326 AAAAAGTTCACCTGCCT
* *
19704622 GCCCGCTCGTTTCGTCGTTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGATCGA
1 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGG-TCGA
* * * *
19704686 ACTAAGGGTTGTGGCAGCAGGATC-GATAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGC
65 ACCAAGGGTTGCGGCAGCAAGATCAG-CAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGC
* * * *
19704750 GCATCCCGCCCCACTGGCTGGCTGAGCG-CC-CACATGCTCGTTTCGTGGGTTGACTTAGGCATA
129 GCATCACGCCCCACTGGCCGACTGAGCGACCGCAC-T-CTCGTTTCGTGGGCTGACTTAGGCATA
* *
19704813 C-GAAGTTCATTCCCAGTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCAGACT-GGATTGA
192 CGGAA-TTCATTCCCAGTCTAACCATACAGAATTCATTCCCAGTCTAAGATCAGA-TGGGATCGA
*
19704876 GGGATGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TCA-TTTTTCTTC
255 GGGATGT-GCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGT-ATTTTTTCTTC
19704931 GTCGGGCGAG
Statistics
Matches: 268, Mismatches: 33, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
340 3 0.01
341 9 0.03
342 221 0.82
343 35 0.13
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.26
Consensus pattern (342 bp):
GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGTCGAA
CCAAGGGTTGCGGCAGCAAGATCAGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGC
ATCACGCCCCACTGGCCGACTGAGCGACCGCACTCTCGTTTCGTGGGCTGACTTAGGCATACGGA
ATTCATTCCCAGTCTAACCATACAGAATTCATTCCCAGTCTAAGATCAGATGGGATCGAGGGATG
TGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTTCTTCACCGGGGCACCATCGC
AAAAAGTTCACCTGCCT
Found at i:19705733 original size:26 final size:26
Alignment explanation
Indices: 19705697--19705749 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19705687 GTTGACTTAG
19705697 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19705723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19705749 G
1 G
19705750 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19706604 original size:26 final size:26
Alignment explanation
Indices: 19706575--19706627 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19706565 TTTGACTGAG
19706575 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
** *
19706601 GCATGTGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19706627 G
1 G
19706628 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19707515 original size:26 final size:26
Alignment explanation
Indices: 19707486--19707538 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19707476 GTTGACTTAG
19707486 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
19707512 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
19707538 G
1 G
19707539 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:19708418 original size:26 final size:25
Alignment explanation
Indices: 19708389--19708440 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19708379 GTTGACTTAG
19708389 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCA-TCTAA
* *
19708415 GCATACGGAGTTGATTCTCATCTAA
1 GCATACGGAGTTCATTCCCATCTAA
19708440 G
1 G
19708441 ATCCGAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCATCTAA
Found at i:19709329 original size:26 final size:26
Alignment explanation
Indices: 19709300--19709371 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
19709290 TAGGCATACA
19709300 GAGTTCATTCCCAGTCTAAGCATATG
1 GAGTTCATTCCCAGTCTAAGCATATG
19709326 GAGTTCATTCCCAGTCTAAGCATATG
1 GAGTTCATTCCCAGTCTAAGCATATG
19709352 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATTCCCAGTCTAAG
19709372 ATTGGACCAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCATATG
Found at i:19711988 original size:26 final size:26
Alignment explanation
Indices: 19711958--19712010 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19711948 GTTGACTTAG
*
19711958 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19711984 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19712010 G
1 G
19712011 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19712894 original size:26 final size:25
Alignment explanation
Indices: 19712856--19712907 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
19712846 GTTGACTTAG
19712856 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
19712881 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
19712907 G
1 G
19712908 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:19713792 original size:26 final size:26
Alignment explanation
Indices: 19713756--19713808 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19713746 GTTGACTTAG
19713756 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19713782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19713808 G
1 G
19713809 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19714330 original size:893 final size:891
Alignment explanation
Indices: 19704623--19715519 Score: 12015
Period size: 845 Copynumber: 12.2 Consensus size: 891
19704613 CACCTGCCTG
* * *
19704623 CCCGCTCGTTTCGTCGTTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
** ** ** * *
19704688 TAAGGGTTGTGGCAGCAGGATCGATAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGC-GC
66 CGAGGG-TGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCG-GTTTCTGC
* * * * * *
19704752 ATCCCGCCCCACTGGCTGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
129 ATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-A
* * * * ** *
19704817 GTTCATTCCCAGTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGATG
193 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * **
19704882 TGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTC-GGGCGAGAAT--
258 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC-ACCATCG
* * ** * *
19704944 -CACTGGAGAACCTGACTGACGGTATTGGGGTTCCGGTGATCGGGGGGTC-GGAGGGTGTGCGCA
322 GCAC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCA
* *
19705007 CATGATGTGCGATGGGTGTTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
386 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
19705072 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
451 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
19705137 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTTGAGTTTTTAGCTGA
516 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
* * *
19705202 ATTTTTTTGT--ACGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCT
581 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCT
* * * * * *
19705265 TCTGAAAAAATTTTAAAAAATCTCGAACCACAAAAATTTTCGAAAATCGTGAAAAATAAAAAACG
646 TCCGAAAAAATTTTAAAAATTCCCGAACCGCAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACG
* *
19705330 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATA
710 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
19705395 AAAATGGTATTGGCATGCAGAAATATGAAGAGGTGCCTAAACCCACCAACCACCCTATCGATCCA
775 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
19705460 CGGCTTGCGCATCCTGTCTTTCTTGCCGACGTAATGCCCGCCCGCCCGCCCG
840 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA
* * * * * *
19705512 CTCGCTCGTTTCATCAGTTGGCTTAGGCATACGAACTTCATTCCCAGTCTAAGATTGGACCGGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * ** * * * ** * *
19705577 CGAGTGTTACAGCAGCAGGATCGGTAGTACGCAGAGGATGACCCGGCCAAACCTTGACTTGC-GC
66 CGAG-GGTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCG-GTTTCTGC
* * * *
19705641 ATCCCACCCCTCTGGCCAGTTGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
129 ATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GA
* ** * *
19705706 GTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAAGGATG
193 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * **
19705771 TGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTC-GGGCGAGAAT--
258 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC-ACCATCG
* *
19705833 -CACTGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCAGGGGGCCGAGGGGGGTGTGCGC
322 GCAC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGGTGTGCGC
* *
19705897 GCATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTC
385 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
19705962 GAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
450 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
19706027 TGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTGGCTG
515 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
* * * *
19706092 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATAC
580 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCC
* * * * * * *
19706157 TTCCAAAAAAATTTTAAAAAATCTCGGACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAGAAC
645 TTCCGAAAAAATTTTAAAAATTCCCGAACCGCAAAAAGTTTC-AAAATCGTGAAAAATAGAAAAC
* * * *
19706222 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATAAATTTACAGGCCAT
709 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
19706287 AAAAATGGTATT-G---GC------------A--TGCCTAAACCCACTTACCACCCCATCGACCC
774 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
19706334 ACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCTCGCCGGC-
839 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC--CA
* *
19706388 CCGTACGCTCGTTT-GATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACC
1 CC---CGCTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** * ** * * * * *
19706452 AGACCGAGGGTTGTGGTAGCAGGATCGATAGCACGCAGA-GGGGACTCGGCCGATCCTCGGCTTA
62 GGACCGAGGG-TGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGG-TTT
* * * * * * * *
19706516 C-GCATCCCGCCCCTCTGGCCGACTGAGCACCTGTACGCTCGTTTCGTGGTTTGACTGAGGCATA
125 CTGCATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* ** * * *
19706580 CGGAGTTCATTCCCAATCTAAGCATGTGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGG
190 C-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * * * *
19706645 GTTGCGGTATCACATGCTGGGCTTGGTCATGTACTGGTGCCGTATTTTTCTTTG-CTGGGGCACC
254 GTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACC
***
19706709 ATTATCGGAGCATCGTTGGAGAACCTGACCGGTAGCATTGGGGTTCCGACGATCGGGGGGGCCGG
318 ---ATC-G-GCA-C---GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGG
** * * *
19706774 GGGGTGTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCACTTAGACTGGCCCCCTATCC
373 GGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * * *
19706839 CTCATCAAACCTCAAGAACTCACACCCCTTTAAAAAGCATTTGAGATTTTATAAGTTTG-TCGCC
437 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCC
* *
19706903 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAAGGGTCACAAAATCTTGTACACTT
501 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
** * * * *
19706968 CAAGTTTTTAGCTGAATTTTTTCGTGCATGCCAAGAAAAATACAACGATCATGTCTACCAAGTTT
566 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTT
* * * * * *
19707033 GGGACCAAAACTCCTTCCGAAAAAATTTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCA
631 GGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAATTCCCGAACCGCAAAAAG-TTTCAAAATCG
* * *
19707098 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTAT
694 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
19707163 GAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGTAGATGTGCCTAAGCCCACCTA
759 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
19707228 GCACCCTATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGTCCGCCCGC
824 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
*
19707293 TTGCCTT
889 ---CC-A
* ** ** *
19707300 CCCGCTCGTTTCATCGGTTACCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * *** * * ** *
19707365 CAAAGGGTTGTAGCAGCAGGATCTATAGCACGCAGAGGGGGACCCGCCCGATCCTTGGCTTGC-G
66 C-GAGGG-TGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGG-TTTCTG
* * * * ** *
19707429 CATCCCGCCCCTCTGGTCGGCTGAGCGCCTGCACGCTTATTTCATGGGTTGACTTAGGCATACGG
128 CATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G
* *
19707494 AGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
192 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
*** ** *
19707559 GCAACAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
257 GCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---
* * * ** *
19707624 TCGGAGCATCGTCGAAGAACCTGACCGGCGACATTGGGCTTCCGGTGATCGGGGGGGCC-AGGGG
319 TC-G-GCA-CG--G-AGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG
* * * *
19707688 GTGTGTGCACATGATGTGGGAAGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCAT
377 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
** *
19707753 CAAACCTTTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGC
442 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
19707818 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTT
507 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
* * * * *
19707883 TTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTCGGGCC
572 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCC
* * *
19707948 AAAACTCCTTCCGAAAAAATTTTAACAAA-TCTCAAACCGCAAAAAGTTTTGAAAATCGTGAAAA
637 AAAACTCCTTCCGAAAAAATTTTAA-AAATTCCCGAACCGCAAAAAG-TTTCAAAATCGTGAAAA
* *
19708012 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
700 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * ** * *
19708077 AAAAGCCGTAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCGAAACCCACCTACCACCC
765 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * *
19708142 TATCGATCCACGGCTTGCGCATACCATCTCTCTGGCC-AGCGTAGTGCCCGTCTGCCCTCCCG
830 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCA
* * *
19708204 CCTGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
** * * * * * *
19708269 CGAGGGTTGTGGCAGTAGGGTCGGCGGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGC-GC
66 CGAGGG-TGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGG-TTTCTGC
* * * *
19708333 ATCTCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
129 ATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GA
* * * ***
19708398 GTTCATTCCCAGTCTAAGCATACGGAGTTGATTCTCA-TCTAAGATCCGAATAGACCGAGGGTTG
193 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * * *
19708462 CAGCAGCAAATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGC
258 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-
** * *
19708527 CAAAGCATCACCGGAGAACCTGACCGGTGGCACTGGGGTTCCGATGATCGGGGTGGCCGGGGGGG
322 ----G---CA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGG
* *
19708592 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTTATCCCTCATC
378 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
19708657 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCA
443 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* **
19708722 ATTAAAGTGTCT-AGAATGAGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
508 ATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
* * * * *
19708785 TTTGGCTGAATTTTTTTGTGC-TAGCGAATAAAAATACAAGGATCACGTCTACCAAGTTT-GGGC
572 TTTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGC
* * * * *
19708848 CAAAGCTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAA
636 CAAAACTCCTTCCGAAAAAATTTTAAAAATTCCCGAACCGCAAAAAG-TTTCAAAATCGTGAAAA
* * *
19708913 ATAGAAAACGAGT-AGTCTTGCCACGAAACTTCACGTGAAAGCTTAAGGGGCCATTGTATGAATT
700 ATAGAAAACGAGTCA-TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*** *
19708977 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTTACCACC
764 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
19709042 CTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCA
829 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA
* * * * *
19709105 TCCATCCACTCATTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGATC
1 --C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * ** **
19709169 GGGCCGAGGGTTAG-GGCAGTAGGATCGGTAGCACCCAGAGCAGGACCCGGTCGATCCCCGGCTT
62 GGACCGAGGG-T-GCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGG-TT
* * ** * * *
19709233 AC-ACATCCCACCCCTCTGAACGGCTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCAT
124 TCTGCATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
19709297 ACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
189 AC-GAGTTCATTCCCAG--T---C-TA---AG--------CA---T-A-C----GGAGTTCATTC
* * * * *
19709362 CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGTTGGGCCCGGGCATGTGCTGGT
227 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
19709427 GCCACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGATCGGCGGCACT
292 GCCGCATTTTTCTTCGTCGGGGCACCA---TCG--GCA----CGGAGAACCTGACCGACGGCATT
* * * *
19709492 GGGTTTACGGCGATCGGGGGGGCCGGCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTA
348 GGGGTTCCGACGATC-GGGGGGCC-G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
19709557 CTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCATTAAAAAGC
410 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
19709622 ATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
475 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
19709687 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
540 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
19709752 ATACAAGGATC-CGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
605 ATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATTCCC
* * * *
19709816 GAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACTAGTCGTCTTGCCATGAAAACTTCA
670 GAACCGCAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG-AAACTTCA
* *
19709881 CGTGAAGGCTTAAGGGACCATTGTATGAACTTTAAAAGCCATAACAATGGCATTGGCAATGCAGA
733 CGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGC-ATGCAG-
* * * * * *
19709946 AAATGTGAAGATGTAGGCCTAAAACCCACCTACCACCCTATCGATCCACGGCATACGTATGCTGT
795 AAATATGAAGATGT--GCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
19710011 CTCTCTGGCTGGCGTAGT--------GCCCG----
857 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA
* * * * *
19710034 CCCGCTCGTGTCGTAGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCCGATCGGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * ** * ** *
19710099 CAAGGGTTG-ACGATAGTAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCCACTTAC-
66 CGAGGG-TGCA-G-CAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGAT-CCCCGGTTTCT
* * * *
19710162 GTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
127 GCATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-
** *
19710227 GAGTTCATTCCCAGTCTAAGCATACGGAGTT-A-GACCAGTCT-AGAGTCGG-CCGGACCAATGG
191 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCGGACCGA-GG
* *
19710288 GTT-C---AGCACAT-CGTGGGCTCGGGCATGTGCTGGGAGCACACA-TTTTCTTCGTCGGGGCA
254 GTTGCGGTAGCACATGC-TGGGCTCGGGCATGTGCT-GGTGC-CGCATTTTTCTTCGTCGGGGCA
* *
19710347 CCATCGCCGGAGCATCAACCGGAGAACCTGACCGAC-GCA-T-GGGTT-CAACGATC--GGGGTC
316 CCAT---C-G-G---C-A-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC
* * *
19710406 -GGGGGTTGTGCTCACATGATGGTGCGAT-GGTGCTGGTACTTGGCCCCTATATT-------TAT
371 GGGGGGGTGTGCGCACATGAT-GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
19710462 CCCTCATCAAA-CTCGAGAACTCA-A-ACCCTT-AAGAG-ATTTGAGATTTAACA-GTTTGCTGC
435 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
19710521 CAGT-GCCATT-AAGTGTCTGAAATGGGGACACTTATTTTCAAATGGTCAGCAAAATGTTGTACA
500 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT-TTTTCAAATGGTCA-CAAAATCTTGTACA
* * * *
19710584 CTTTGAGTTTTCAGCTGAATTTTTTTATGCATGCCAACAAAAATACTAGGATCATGTCTACCAAG
563 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAG
*** ** * ** * *
19710649 TTTGTTTCTGAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAGGTTTCGAAGAT
628 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATTCCCGAACCGCAAAAAGTTTC-AAAAT
* ** *
19710714 CATGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGT
692 CGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** *
19710779 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAGCCCACC
757 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
19710844 TACCATCCTATCGATCCACGGCTTGCGGATCCCGTCTCTTTGGCCGTCGTAGT--------GCCC
822 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
19710901 G----
887 GCCCA
* * * * **
19710902 CCCGCTCGTTTCGTCGATAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** * * * * ** *
19710967 TGAGGGTTGTGGTAGCAGGATCGGTAGGACACAAAGGGGGACCC-AGTTGATCCCCGGCTTGC-G
66 CGAGGG-TGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGA-CCGATCCCCGG-TTTCTG
* * *
19711030 CATCCCACCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
128 CATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G
19711095 AGTTCATTCCCAG--T---C-TA---AG---A-T--C-G----A-AT-----CGGACCGAGGGTT
192 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * * * *
19711134 ACGGCAGCACATGCTGGGCTCAGGTAT-TGGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATC
257 GCGGTAGCACATGCTGGGCTCGGGCATGT-GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * *
19711198 -AC-CGGAGAACCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
321 GGCACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGC
** * * * *
19711261 ACATGATGTATGTTGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTT
385 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
19711326 GAGAACTCACACCCCCTTGAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
450 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
19711391 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTG
515 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
* * * *
19711456 AATATTTTTGTGCATGCCAACAATAATACGAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCC
580 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCC
* * * * * *
19711521 TTTCAAAAAAATTTTAAAAATTCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAAAGAAAAT
645 TTCCGAAAAAATTTTAAAAATTCCCGAACCGCAAAAAG-TTTCAAAATCGTGAAAAATAGAAAAC
19711586 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
709 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*** *
19711651 AAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCC
774 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
19711716 ACGGCTTGCGCATCCCGTCACTCTGGTCGGA-GTAGTGCACGCCCGCCTGCCCGCCCG
839 ACGGCTTGCGCATCCCGTCTCTCTGG-CCGACGTAGT----GCCCGCCCGCCCGCCCA
* * * *
19711773 TCCGCTCGTTTCGTCGGTTGGGTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * *
19711838 TGAGGGTTGCGGCAGCAAGATCGACAGCACACAGAGGGGGACCCAACCGATCCCCGGCTTGTGCA
66 CGAGGG-TGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGTTTCTGCA
* * * * * *
19711903 TCTCGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
130 TCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAG
* *
19711968 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGC
194 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* *
19712033 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTC
259 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC
* * * * *
19712098 GGAGCATCGTCGGAGAACTTGGCCGGCGGCATTGGGGTTCCGACCATCGGGGGGTTCGGGTGGGG
321 -G-GCA----CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGG-GGGG
* * *
19712163 TGTGCGCACATGATGTCCGATGGGTGCTGGTAGTTGGCCCTTATATTGG-CCCCTATCGCTCATC
378 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
19712227 AAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
443 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
19712291 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
508 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* * *
19712356 TTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCA
573 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCA
* * * * *
19712421 AAAGTCCTT-GGAAAGATTTTTAAAAATTCCCGCACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
638 AAACTCCTTCCGAAAAAATTTTAAAAATTCCCGAACCGCAAAAAGTTTC-AAAATCGTGAAAAAT
* *
19712485 AAAAAACGAATCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
702 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
19712550 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
767 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
19712615 TCGATCCACGACTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCA
832 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA
* *
19712675 ----CTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * * *
19712736 CGTGGGTTG-TGATAGCAGGATCGGCAGCACACGGAGGGGGACCCGGCCAATCCTCGGCTTGC-G
66 CGAGGG-TGCAG-CAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGG-TTTCTG
** ** *
19712799 CATCCTGCCCCTCTGGCCTACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
128 CATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
* *
19712864 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG
193 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * *
19712929 CGGTAGCTCATGCTGGGCCCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGAACCATCAC
258 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---
* * * ** * * *
19712994 CGGGGCATCTCCGGAGAACCTAACCGAC-ACTATTAGTTTTACGACGATCGAGGTGGCC-GGGAG
320 C--GGCA----CGGAGAACCTGACCGACGGC-ATTGGGGTTCCGACGATCG-GGGGGCCGGGGGG
19713057 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
377 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
19713122 CAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG-TGCCAGTAGC
442 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
19713186 TATTAAAGTGTTTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
507 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
* * *
19713251 TCTAG-TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTGGGGGCC
572 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCC
* *
19713315 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
637 AAAACTCCTTCCGAAAAAATTTTAAAAATTCCCGAACCGCAAAAAGTTTC-AAAATCGTGAAAAA
* * * *
19713380 TAGAAAATGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTA
701 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** *
19713445 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCT
766 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
19713510 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA
831 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA
* * * * *
19713571 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTCCTAGTCTAAGATTGGATCAGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * *
19713636 CGAGGGTCACAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGTTTCTGCA
66 CGAGGGT-GCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGTTTCTGCA
*
19713701 TCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAG
130 TCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAG
* * * *
19713766 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGTTTAC
194 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* *
19713831 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-GC
259 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGC
* *
19713895 A-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGGTGTGCACACA
324 ACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGGTGTGCGCACA
* * * *
19713959 TGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTTGAG
388 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
19714024 AACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
453 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
19714089 CCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAAT
518 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
* * * *
19714154 TTTTTTGTGCATGCCAACAAGAATACAAGGATCATGTCTACCAAGTTTGGGGCCACAACACCTTC
583 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTC
* * **
19714219 CGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCATAAATAATGAAAAATAGAAAACGAG
648 CGAAAAAATTTTAAAAATTCCCGAACCGCAAAAAGTTTCA-AAATCGTGAAAAATAGAAAACGAG
* * *
19714284 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAA
712 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
19714349 AATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACAACCCTATTGATCCATG
777 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
19714414 GCTTGCGCATCTCGTCTCTCTGGCCGACATAGT----GCCCGCCCG----
842 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA
* * * *
19714456 CCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAAGATTGGACCGGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
** * *
19714521 CGAGGGTTGTGGTAGCAAGAT---CAG----C--------ACCCGACCGATCCCCAGG---CATG
66 CGAGGG-TGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCC-GGTTTC-TG
**** * * ** * * * * * * *** *
19714568 C-T-CGTTTCGT-GGGTTGACTTAG-GCATACGGA-GTTC-ATTC-CCAG-T--C-TAAGCATAC
128 CATCCCACCCCTCTGGCCGGCTAAGCGC--CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
19714622 GAAGTTCATTCCCAG--T---C-T--------------------AAGATCGGACCGGACCGAGGG
191 G-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
*
19714661 TTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
255 TTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * *
19714726 CACCGGAGCATCACCGGAGAACTTGACCGATC-GCATTGGGGTTCTGATGATCGAGGGGGCCGGG
320 ---C-G-G---CA-CGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCG-GGGGGCCGGG
* * * * *
19714790 GGGGTTTGCGCAAATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATACCT
374 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
19714855 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
439 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
19714920 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
504 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
* * * *
19714985 GTTTTTGGCTGAATATTTTTGTGCATGCCAACAATAATACAAGGATCACGTTTACCAAGTTTGGG
569 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGG
* ** * *
19715050 GCCAAAACTCCTTTCGAAAAAATTTTAAAAATTCTTGAACCGTAAAAAGTTTTGAAAATCGTGAA
634 GCCAAAACTCCTTCCGAAAAAATTTTAAAAATTCCCGAACCGCAAAAAG-TTTCAAAATCGTGAA
*
19715115 AAAAAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
698 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
19715180 TTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATAAAGATGTGCCTAAACCTACCTACCAC
763 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
19715245 CCTATCGATCCACGGCTTACGGATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCG
828 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA
* * * * *
19715309 CCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA-TCTAAGATCAGATCGGAT
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * *
19715373 TGAGGGTTGCTA-CAGCAGGATCGACAGCGCACAGAGGGGGACCCGGCCAATCCCCAGCTTAC-G
66 CGAGGG-TGC-AGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCC-GGTTTCTG
* * *
19715436 CAT-CCAGCCCCTCTGGCCAGCTGAA-CGCCCACACGCTCGTTTCGTGGGTTGACATAGGCATAC
128 CATCCCA-CCCCTCTGGCCGGCT-AAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
19715499 GGAGTTCATTCCCAATCTAAG
191 -GAGTTCATTCCCAGTCTAAG
19715520 ATTGGGCTGG
Statistics
Matches: 8644, Mismatches: 1021, Indels: 693
0.83 0.10 0.07
Matches are distributed among these distances:
834 96 0.01
835 2 0.00
836 1 0.00
837 7 0.00
838 7 0.00
840 1 0.00
841 9 0.00
842 41 0.00
843 8 0.00
844 8 0.00
845 492 0.06
846 33 0.00
847 21 0.00
848 2 0.00
849 22 0.00
850 12 0.00
851 1 0.00
852 33 0.00
853 49 0.01
854 15 0.00
855 299 0.03
856 26 0.00
857 23 0.00
858 3 0.00
859 2 0.00
860 21 0.00
861 3 0.00
862 1 0.00
863 1 0.00
864 1 0.00
865 6 0.00
866 15 0.00
867 131 0.02
868 126 0.01
869 9 0.00
870 21 0.00
871 196 0.02
872 34 0.00
873 47 0.01
874 111 0.01
875 179 0.02
876 7 0.00
877 29 0.00
878 177 0.02
879 99 0.01
880 15 0.00
881 2 0.00
882 2 0.00
883 1 0.00
884 1 0.00
885 72 0.01
886 4 0.00
887 43 0.00
888 6 0.00
889 372 0.04
890 302 0.03
891 442 0.05
892 81 0.01
893 458 0.05
894 5 0.00
895 144 0.02
896 366 0.04
897 268 0.03
898 177 0.02
899 23 0.00
900 162 0.02
901 359 0.04
902 215 0.02
903 294 0.03
904 224 0.03
905 25 0.00
906 204 0.02
907 181 0.02
908 271 0.03
909 430 0.05
910 41 0.00
911 234 0.03
912 4 0.00
913 2 0.00
918 2 0.00
921 4 0.00
922 1 0.00
924 1 0.00
925 13 0.00
926 54 0.01
927 106 0.01
928 6 0.00
930 12 0.00
931 117 0.01
932 5 0.00
933 170 0.02
934 161 0.02
935 36 0.00
936 25 0.00
937 3 0.00
938 13 0.00
940 4 0.00
941 54 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
CGAGGGTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGTTTCTGCAT
CCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
TAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGCAC
GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTTAAAAATTCCCGAACCGCAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCAT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA
Found at i:19714627 original size:26 final size:26
Alignment explanation
Indices: 19714590--19714642 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19714580 GTTGACTTAG
*
19714590 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19714616 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19714642 G
1 G
19714643 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19715592 original size:159 final size:154
Alignment explanation
Indices: 19715312--19715673 Score: 422
Period size: 159 Copynumber: 2.3 Consensus size: 154
19715302 CCGCCCGCCT
* * ***
19715312 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC-ATCTAAGATCAGATCGGATTGA
1 GCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAA
*
19715376 GGGTTGCTACAGCAGGATCGACAGCGCACAGAGGGGGACCCGGCCAATCCCCAGCTTACGCATCC
65 GGGTTGCTACAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCAATCCCCAGCTTACGCATCC
19715441 AGCCCCTCTGGCCAGCTGAACGCCCACAC
130 AGCCCCT-TGG---GCTGAACGCCCACAC
* * **
19715470 GCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAATCTAAGAT-TGGGCTGGACCA
1 GCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATC-GGACCA
** * * * * * * *
19715534 AGGGTTGCTGTAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGTCGATCCTCGGCTTACGCATC
64 AGGGTTGCTACAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCAATCCCCAGCTTACGCATC
* * * * *
19715599 CCGCCCCTTTGGTTGAGCGCCCGCAC
129 CAGCCCCTTGGGCTGAACGCCCACAC
*
19715625 GCTCGTTTCGTGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAG
1 GCTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
19715674 CATACGGAGT
Statistics
Matches: 175, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
154 36 0.21
155 23 0.13
158 42 0.24
159 74 0.42
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (154 bp):
GCTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAG
GGTTGCTACAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCA
GCCCCTTGGGCTGAACGCCCACAC
Found at i:19715683 original size:26 final size:26
Alignment explanation
Indices: 19715647--19715699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19715637 GTTGACTTAG
19715647 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
19715673 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19715699 G
1 G
19715700 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19717773 original size:26 final size:26
Alignment explanation
Indices: 19717737--19717789 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19717727 GTTGACTTAG
19717737 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19717763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19717789 G
1 G
19717790 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19718237 original size:895 final size:872
Alignment explanation
Indices: 19716977--19719684 Score: 3583
Period size: 883 Copynumber: 3.1 Consensus size: 872
19716967 ATCGTCGGAG
* * * * * * *
19716977 CATCGTCGAAGAACTTGACCGACGGCATTGGGGTTTCGAGGATCACGGGGGCCGAGGGGTTGTGC
1 CATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGC
* * *
19717042 ACTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
19717107 TCAAGAA-TCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
130 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
19717171 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
19717236 TGAATTATTTTATGCATGCCAACAAAAATACAACGATCCCGTCTACCAAGTTTGCGGCCAAAAAT
260 TGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACA-
* *
19717301 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATTAAAAATAGAAA
324 CCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * * *
19717366 ACGAGTCGTCTTGCCATTAAAACGTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGC
389 ACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGC
* * *
19717431 CAAAAAAAGGGCATTGGCTCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
453 CATAAAAATGGCATTGGCTCACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGA
* * * *
19717496 TCCATGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGT
518 TCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGT----GCCCGCCCG----CCCGCTTGT
* * *
19717561 TTCGTCGGTTGGCTTAGGCAGACGGAGCTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTCA
575 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATTGGA-CAGACCGAGGGT--
* * *
19717626 CAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTT-CTGCATCCCACCC
637 --G-A-CAGGATCGGTAGCACG-AGA---GGACCCGGTCGATCCCCGACTTGC-GCATCCCACCC
* * *
19717690 CTCTGGCCGGCTAAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
693 CTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
* *
19717755 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGTTTGCGGCAGCAC
758 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAC
* *
19717820 ATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGAGGCAC
823 ATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
* * *
19717870 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGTGGCTGGGGGGGGTGTG
1 CATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGC-CGGGGGGGTGTG
*
19717935 CGCACATGATGT-CTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAT
64 CGCACATGATGTGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
** * *
19717999 CCTTGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATT
128 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
19718064 AAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
193 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
19718129 GCTGAA-TATTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCACA
258 GCTGAATTA-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-A
* *
19718193 ACACCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATAATGAAAAATAG
321 ACACCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* *
19718258 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTAAAA
386 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAA
** * *
19718323 GCCATAAAAATGGCATTGGCAT-GTAGAAATATGAAGACGTACCTAAACCCACCTACCAGCCTAT
451 GCCATAAAAATGGCATTGGC-TCACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTAT
* *
19718387 CGATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCCGCTTGTTTCGT
515 CGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGTTTCGT
* * * *
19718452 CGGTTGGCTTAGCCATACGGAGTTCATTCCCAATTTAAGATTGGACTGGACCGAGGGT----TG-
580 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATTGGAC-AGACCGAGGGTGACAGGA
* * * * **
19718512 T-GGTAGCAAGATCAGCACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTAACCGGCTGAG
644 TCGGTAGCACGA-GAGGACCCGGTCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * * *
19718576 CGCCCGCATGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATGCG
708 CGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
* * * * * *
19718641 AAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGC
773 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGC
*
19718706 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
838 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
* * * * *
19718741 CATCACCGGAGCATCACCGGAGAACCTGACTGATTGCATTGCGGGTTCTGATGATCGAGGGGGCC
1 CATCGCCGAAG-A--ACC--TG-ACC-GAC-G---GCATTG-GGGTTCCGACGATCG-GGGGGCC
* * *
19718806 GGGGGGGTGTGCGCAAATGATGTGCCATGGGGGCTGGTACTTGGCCCTTATATTGGCCCCCCTAT
53 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTAT
* * *
19718871 ACCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGC
117 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
19718936 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCATATGGTCACAAAATCTTGTACACT
182 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
19719001 TCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
247 TCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
19719066 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAGACCGCAAAAGGTTTCCAAAATCG
312 TGGGGCC-AAACACCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCA
*
19719131 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTAT
376 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTAT
19719196 GAATTTACAAGCCATAAAAATGGCATT-GC-CATGCAGAAATATGAAGATGTACCTAAACCCACC
441 GAATTTACAAGCCATAAAAATGGCATTGGCTCA--CAGAAATATGAAGATGTACCTAAACCCACC
* * * *
19719259 TATCACCCTATCGATCCACGGCTTGCGTAGCTCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCC
504 TACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * * * *
19719324 GTTTATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTTTAAGATTGGACTGCACTGA
569 GCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATTGGACAG-ACCGA
* * *
19719389 GGGTTGTGGTACAGAATCGGCAGCACGTAGAGGACCCGGCCGATCCCCGACTTGCGCATCCCACC
633 -GG--GT-G-ACAGGATCGGTAGCACG-AGAGGACCCGGTCGATCCCCGACTTGCGCATCCCACC
* * * * ** *
19719454 CCTCTGGCAGGCTGAGCGCCCAAACGTTCGTTTCGTGGGTTCACTTAGGCATGTAGGGTTCATTC
692 CCTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
* * ** * *
19719519 CCAGTCCAAGCATACGGAGTTCATTCCCAGTATAAGATCGGACTGGACCGAGGGTTATGACAGTA
757 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCA
* * *
19719584 CATGC-AGCGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTTGAT-GGGGCAC
822 CATGCTAG-GCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCATCGGGGCAC
*
19719635 CATCGCTGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
1 CATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
19719685 GCCGAGGGAG
Statistics
Matches: 1591, Mismatches: 179, Indels: 102
0.85 0.10 0.05
Matches are distributed among these distances:
871 198 0.12
872 2 0.00
873 1 0.00
874 12 0.01
875 1 0.00
876 2 0.00
877 3 0.00
878 2 0.00
879 1 0.00
881 5 0.00
882 73 0.05
883 498 0.31
884 7 0.00
885 1 0.00
886 66 0.04
887 3 0.00
888 3 0.00
889 1 0.00
890 9 0.01
891 3 0.00
892 3 0.00
893 45 0.03
894 400 0.25
895 249 0.16
896 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
CATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACACC
TTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCTCACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATTGGACAGACCGAGGGTGACAGGATCGGTAG
CACGAGAGGACCCGGTCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGAA
CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTG
GTGCCGCATTTTTCTTCATCGGGGCAC
Found at i:19719881 original size:26 final size:26
Alignment explanation
Indices: 19719844--19719896 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19719834 GTTGACATAG
*
19719844 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19719870 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19719896 G
1 G
19719897 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19721677 original size:904 final size:902
Alignment explanation
Indices: 19719691--19725939 Score: 7575
Period size: 904 Copynumber: 7.0 Consensus size: 902
19719681 GGGGGCCGAG
* * * ** * *
19719691 GGAGTTTATTTCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGGACGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGTATCGACAGCACGT
* *** * *
19719756 AGAGGGAGACCCGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAACGCCCGCAC
66 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
19719821 GCTCGTTTTGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
131 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
** * * *
19719886 CCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCTTGTGCTGG
196 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * *
19719951 TGTCATATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCCGACCGGTGGCAT
261 TGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCAT
* * *** * *
19720016 TGGGGTTCCGGCGATCAGGGGGGTTGGGGGGGTGTGCACGCATGATGTGCGATGGGTGCTGGTAC
326 TAGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * * *
19720081 TTGGCCCTTATATT-TCCCCCTATCCCTTATCAAGCCTTGAGAACTCACACCTCCTTAAAGAGCA
390 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
19720145 TTTGATATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
455 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
19720210 AATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAA
520 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAA
* *
19720275 TACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATTCTCG
584 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
** * * * *
19720340 AA-CTGAAAAAGTTTTCAAAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCAAGAAACTTCGC
649 AACCACAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * * *
19720404 GTGAAGGCTTGAGGGACCGTTGTATGAATTTACAAGCCATAAAATTGACATTGGCATGCAGAAAT
713 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
* * * *
19720469 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCGTCCCATCTCTTTG
778 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * ** * * * *
19720534 GCCGGCGTAGTTCCCATCTGTCCGCCCGCCCGCTAGTTTCGTCAGTTGGCTTAGGCATAC
843 GCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * ** ** ** * *
19720594 AGAGTTCATTCCTAGTCTAAGAT-TGAACCGAACCAAGGCCTATGGTAGCAGTATCGGCAGCATG
1 GGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTGCGGTAGCAGTATCGACAGCACG
* * * * * * * ** * *
19720658 CAGATGGGGACCCGACGGATCCTCAGCTTGCGCATCCCACCCATCTGGATGGGTGAGCGCCCACA
65 TAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
19720723 TGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGAAGTTCAT
130 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* *** * **
19720788 TCCCAGTCTAGGATCAGATTGGACCGAGAGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTG
195 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * *
19720853 GTGCTGTATTTTTCTTTGTCGGGGCACCATCGCCGAAGCATCACCGAAGACCCTGACCGGCGGCA
260 GTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCA
* * * * * * * * *
19720918 TTGGGGTTTCGGCGATCGGAGGAGTCGGGGGGGGTGTGCGCACGTCATGTGCAATGGGTGCTGGT
325 TTAGGGTTCCGACGATCGG-GGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
19720983 ACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAATAG
388 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
19721048 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC-TTTTT
453 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
19721112 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTCTTTGTGCAAGCCAAAAAA
518 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* **
19721177 ATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTGGAAAAAATTTTAAAAAATCTC
583 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
* * * *
19721242 GAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATTAATCTTCAC
648 GAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
19721307 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAAT
713 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
19721372 ATGAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
778 ATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * *
19721437 GGCCGGCTTAGTGTCCGCCCGCGCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCGTAT
842 GGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
19721498 GGAGTTCATTCCCAGCCTAAGATCAGACCGGATTGAGGGTTGTGATAGCAGTATCGATAGCATGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGTATCGACAGCACGT
* * * * *
19721563 AGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCTGACTGAGTGCCCACAC
66 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
19721628 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCAT
131 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCAT
* * * * * *
19721692 TTCCAGTCTAAGATCAGACCAGACCGAGGGCTACAGCAGTACATGCTGGGCTCGGGCATTTGCTG
195 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * *** * *
19721757 GTGCCGCATTTTTGTTCGTTAAGTCACCATCGTCGGAGCATCGCC-AGAGAACCTGACCGGAGGC
260 GTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGA-AGAACCTGACCGGCGGC
* *
19721821 ATTAGGGTTCCGACGATC--AGGGGCCGGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTA
324 ATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
19721884 CTTGGCCCTTATGTTGGCCCCCTATCCGTCATCAATCCTCAAGAACTCACACCCCCTTAAAGAGC
389 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
19721949 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTC
454 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
19722014 AAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCATAAAAA
519 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-AAAAA
* *
19722079 ATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC-C
583 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
* * * *
19722143 TGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
648 -GAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *** *
19722208 CGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAA
712 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
* *
19722273 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCATCTCTCT
777 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * * *
19722338 GGCCGGTGTAGTGCCTGCCCGCCCGCCCACCCGCTCGTTTCGTCGTTTGGCTTAGGCATGC
842 GGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * * ** *
19722399 AGAGTTCATTCCCAGTGTAAGATTAGACCAGACTAAGTGTTGTGGCAGCAGGT-TCGGTAGCACA
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCA-GTATCGACAGCACG
** * * *
19722463 TAGACAGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCA
65 TAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
19722528 CGCTCATTTCGTGGGTTGACTTAGGCGTACGAAGTTCATTCCCAGTCTAAGCAGACGGAGTTCAT
130 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* * ** * *
19722593 TCCCAATCTAAGATCGGATTAGACCGAGGGTTGCGGCTGCACATGCTGGGCTCGAGCATGTGCTG
195 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * ** * * *
19722658 GTACCGCACTTATCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCA
260 GTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCA
* *
19722723 TTAGGGTTTCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGT
325 TTAGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
19722788 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAG
388 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * * *
19722853 CACTTGAGGTTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGAGGACACTTTTTT
453 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
19722918 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAACTGAATTTTTTTGTGCATGCCAACAAA
518 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAA
* * *
19722983 AATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
582 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* ** * *
19723048 CAAACCACAAAAAAGTTTTAAAAATTATGAAAAATAGAAAATGAATCGTCTTGCCATGAAACTTC
647 CGAACCAC-AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * *
19723113 TCGTGAAGGCTTAAGGGACCGTTGTATGAATTTACATGCTATAAAAATGGCATTGGCACGTAGAA
711 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
* *
19723178 ATATGAAGATGTGCCT------A---A--ACCC-AT-G----A---CTTGCACATCCCATCTCTC
776 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
19723223 TGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
841 TGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *
19723285 AGAGTTCATTCCCTGTCTACGATCGGACCGGACCGAGGGTGGCGGCAGCAAG-ATC-AGCAGCAC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGC-AGTATCGA-CAGCAC
* * ** * * *
19723348 GTAGAGGGGGACCCGACCAATCCACGGCTTGCGCATTTCACCCCTCTGGCTGGCTGAGCACCCGC
64 GTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
19723413 ACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT-T----A-A-G-A----A
129 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* ** * **
19723466 -T----G-----GAT-----CAGACTGAGGGTTATGGCAGCACATGCTCGGCTTAGGCATAG-GC
194 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT-GTGC
* * * ** ** * *
19723515 TGATGCTGTATTTTTCTT-GTCGGGGCGCCATCACCGGAGCATCATCGGAGAACCTGACCGGCTG
258 TGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGG
* * *
19723579 CATTGGGGTTCCGATGATCGGGGGGTCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
323 CATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
19723644 TACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACACCCCCTTAAAGA
387 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
** * * * *
19723709 GTGTTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAATGTATAAAATGGGGACACTTTTT
452 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
19723774 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
517 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAA
* *
19723839 AAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCGAAAAAATTTTAAAAAATC
581 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-
* *
19723904 CTC-AACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
645 CTCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
19723968 GACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
710 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
* * *
19724033 AATATGAGGATGTCCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCT
775 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
19724098 TTGGTCGGCGTAGTGCCCGCTCGCCCGCCCGCCCACTC-TCTTCGTCGGTTGGCTTAGGCATAC
840 CTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGT-TTCGTCGGTTGGCTTAGGCATAC
* * * * * *
19724161 GGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGCAGGATCGACAACACGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGTATCGACAGCACGT
** * *
19724226 AGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGACCGCAC
66 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
19724291 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T---C--A--AAG---A-T
131 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
* *
19724343 --C-G-----GATC-G----GACAGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
196 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* ** * * **
19724395 TGCCGTATTTTTCTCCACCGGGGCACCATCGTCGGAGCATCGTC-AGAGAACCTGACCGACGATA
261 TGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGA-AGAACCTGACCGGCGGCA
* * * ** * *
19724459 TTAGGGTTTCGACAATCGGGGGGGCCGAGGATTGTGTGCACATGATGTGCGGTGGGTGCTGGTAC
325 TTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * * *
19724524 TTGGCCCTTATATTTGCCCCCTATCCCTCATCAATCCTCAAGAACTCAAACCCCATTAAAGAGCA
390 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
19724589 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
455 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
19724654 AATGGTTACAAAATCTTGTACACTTCGAGTTTCTAGTTGAATTTTTTTATGCATGCCAAAAAAAA
520 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAA
* *
19724719 TACAAGGATCACGTCTACCAAGTTTGGAGCTAAAACTCCTTCCGAAAAAATTTT-AAAAATC-CA
584 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-
** *
19724782 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCAC
648 GAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
19724846 GTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
713 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
* * * * *
19724911 ATGAAGATGTGCGTAAACCCACCGACCACCCTATCAATCCACGACTTGCGCATCTCGTCTCTCTG
778 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
19724976 GCCGG---AGT-----ACTGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATAC
843 GCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
19725028 AGAGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTACGGTAGCAAG-ATTGGCAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGC-AGTATCGACAGCACG
* * ** * *
19725092 TAGAGGGGGACCCGGCCTATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAACTAAGCGCCAGCA
65 TAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
19725157 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTGTAAGCATACGGAGTTCAT
130 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* * * * * * *
19725222 TCCCAATCTATGATCGGACCAGACCGAGGGTTGCGCCAGCACATTCTGGGCTCGGGTATGTGCTT
195 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
19725287 GTGCCGCATTTTTCTTCGTCGGGGAACCA---TC---G--TCG--G-AGAACCTGACCGACGACA
260 GTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCA
** * * *
19725341 TTTTGGTTCCGACGATCGGAGGGGCCAGGGGGTGTGCG-ACATGATGTACGATGGGTGCTGGTAC
325 TTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
19725405 TTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCA
390 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
** * *
19725469 TTTGAGATTTTACAGGTTTGCTGTTAGTAGCCATTAAAGTGTCTGAAATTGGGACATTTTTTTCA
455 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
19725534 AATGGTC-CAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAA
520 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAA
* * * ** * *
19725598 TATAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCCTTAAAAATATTAAAAAATCTTG
584 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
* * *
19725663 AACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTCACG
649 AACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * ** *
19725728 TGAAGGCTTATGGGACCATTGTATGAATTTACAAACCATAAAAATATCATT-GCATGCAGAAATA
714 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* * * *
19725792 TGAAGATGTACCTAAACGCACATACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGG
779 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * * *
19725857 CCGGCATAGTGCCCGTTCGCCCGTCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATAC
844 CCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
19725916 GGAGTTCATTCCCAGTCTAAGATC
1 GGAGTTCATTCCCAGTCTAAGATC
19725940 GGATCAGACC
Statistics
Matches: 4625, Mismatches: 619, Indels: 219
0.85 0.11 0.04
Matches are distributed among these distances:
856 126 0.03
857 275 0.06
858 66 0.01
859 45 0.01
860 1 0.00
862 1 0.00
864 3 0.00
865 1 0.00
867 193 0.04
868 5 0.00
869 1 0.00
872 4 0.00
873 2 0.00
874 3 0.00
875 159 0.03
876 258 0.06
877 317 0.07
878 58 0.01
879 101 0.02
880 221 0.05
881 114 0.02
882 46 0.01
883 3 0.00
885 4 0.00
886 214 0.05
887 2 0.00
888 63 0.01
889 2 0.00
890 2 0.00
893 63 0.01
894 2 0.00
895 4 0.00
897 1 0.00
900 147 0.03
901 455 0.10
902 193 0.04
903 462 0.10
904 504 0.11
905 379 0.08
906 125 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGTATCGACAGCACGT
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCAT
TAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA
CCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
Found at i:19721687 original size:26 final size:26
Alignment explanation
Indices: 19721651--19721703 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19721641 GTTGACTTAG
*
19721651 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19721677 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19721703 G
1 G
19721704 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19726489 original size:717 final size:706
Alignment explanation
Indices: 19725207--19726688 Score: 1977
Period size: 718 Copynumber: 2.1 Consensus size: 706
19725197 CCCAGTGTAA
* * *
19725207 GCATACGGAGTTCATTCCCAATCTATGATCGGACCAGACCGAGGGTTGC-GCCAGCACATTCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAG-CAGCACATGCTGG
*
19725271 GCTCGGGTATGTGCTTGTGCCGCATTTTTCTTCGTCGGGGAACCATCGTCGGAGAACCTGACCGA
65 GCTCGGGTATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGAACCATCGTCGGAGAACCTGACCGA
**
19725336 CGACATTTTGGTTCCGACGATCGGAGGGGCCAGGGGGTGTGCGACATGATGTACGATGGGTGCTG
130 CGACATTGGGGTTCCGACGATCGGAGGGGCCAGGGGGTGTGCGACATGATGTACGATGGGTGCTG
* *
19725401 GTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGA
195 GTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
** * * * *
19725466 GCATTTGAGATTTTACAGGTTTGCTGTTAGTAGCCATTAAAGTGTCTGAAATTGGGACATTTTTT
260 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTT
* *
19725531 TCAAATGGTCCAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAA
325 TCAAATGGTCCAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAAAAA
*
19725596 AATATAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCCTTAAAAATATTAAAAAATCT
390 AATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTT-CTTAAAAATATTAAAAAATCT
* ** * *
19725661 TGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTCA
454 TGAACCACAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTAA
* * *
19725726 CGTGAAGGCTTATGGGACCATTGTATGAATTTACAAACCATAAAAATATCATT-GCATGCAGAAA
519 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATAGCATTGGCAAGCAGAAA
*
19725790 TATGAAGATGTACCTAAACGCACATACCACCCTATCGATCCACGGCTTGCGCATC-CTGTCTCTC
584 TATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCTC-GTCTCTC
** **
19725854 TGGCCGGCATAGTGCCCGTTCGCCCG-T-CCG-CCCGCTCATTTCATCGGTTGGCTTAG
648 TGGCCGAAATAGTGCCCGCCCGCCCGCTCCCGCCCCGCTCATTTCATCGGTTGGCTTAG
* *
19725910 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* ** * *
19725975 CTTGGGCT-TGTGCTGGTGCTTCATTTTTCTTCGTTGGGGCACCATCG-CTGGAGAATCACCGGT
66 CTCGGG-TATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGAACCATCGTC-GGAG-A--ACC--T
* * ** *
19726038 GAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCTTACATGATGT
124 G-ACC-G---A-CGACATTGGGGTTCCGACGATCGGAGGGGCCAGGGGGTGTGC-GACATGATGT
* *
19726103 GCGATGGGTGCTGGTAGC-TGGCCCTTATATTGGCCCCCTATCCC-GATTCAAACCTCGAGAACT
182 ACGATGGGTGCTGGTA-CTTGGCCCTTATATTGG-CCCCTATCCCTCA-TCAAACCTCGAGAACT
*
19726166 CACACCCCCTTAAAGAGCAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTTAAGTGTCTA
244 CACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTA
*
19726231 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-ATACACTTCTAGTTTTTAGCTGAATTA
308 AAATGGGGACACTTTTTTCAAATGGTC-CAAAATCTTGA-ACACTTCGAGTTTTTAGCTGAATTA
** *
19726295 TTTTGTGCATGCCAACAAAAAA-ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-T
371 TTTTGTGCATGCCAA-AAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCT
* **
19726358 TGAAAAAATTTTAAAAAAT-TTAGAACCGTAAAAACTTTCAAAAATCATGAAAAATAGAAAACGA
435 T--AAAAATATTAAAAAATCTT-GAACCACAAAAACTTTCAAAAATCATGAAAAATAGAAAACGA
* * * *
19726422 GTCGTCTTGCCATGAAAC-TAACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAA
497 GTCATCTTGCCAAGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAA
* * * *
19726486 AAATGGCATTGGCAAGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
562 AAATAGCATTGGCAAGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCAC
*
19726551 GGCTTGCGCATCTCGTCTCTCTGGCCGAAATTGTGCCCGCCCGCCCGCTCGCCCGCCCCCCCGCT
627 GGCTTGCGCATCTCGTCTCTCTGGCCGAAATAGTGCCCGCCCGCCCGCT--CCCG---CCCCGCT
* *
19726616 CGTTTCGTCGGTTGGCTTAG
687 CATTTCATCGGTTGGCTTAG
* * *
19726636 GCATACGGAGTTCATTCCTAGTCTAAAATCGGACCGGACCGAGGGTTGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCA
19726689 ACAAGATCAG
Statistics
Matches: 676, Mismatches: 68, Indels: 47
0.85 0.09 0.06
Matches are distributed among these distances:
702 1 0.00
703 101 0.15
704 3 0.00
706 3 0.00
708 2 0.00
709 3 0.00
710 1 0.00
713 1 0.00
714 36 0.05
715 40 0.06
716 45 0.07
717 119 0.18
718 238 0.35
719 8 0.01
722 3 0.00
726 72 0.11
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (706 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGTATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGAACCATCGTCGGAGAACCTGACCGAC
GACATTGGGGTTCCGACGATCGGAGGGGCCAGGGGGTGTGCGACATGATGTACGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTT
CAAATGGTCCAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAAAAAA
ATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCTTAAAAATATTAAAAAATCTTG
AACCACAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTAACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATAGCATTGGCAAGCAGAAATA
TGAAGATGTACCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGG
CCGAAATAGTGCCCGCCCGCCCGCTCCCGCCCCGCTCATTTCATCGGTTGGCTTAG
Found at i:19726606 original size:16 final size:16
Alignment explanation
Indices: 19726585--19726617 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
19726575 CCGAAATTGT
*
19726585 GCCCGCCCGCCCGCTC
1 GCCCGCCCCCCCGCTC
19726601 GCCCGCCCCCCCGCTC
1 GCCCGCCCCCCCGCTC
19726617 G
1 G
19726618 TTTCGTCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.70, G:0.24, T:0.06
Consensus pattern (16 bp):
GCCCGCCCCCCCGCTC
Found at i:19726824 original size:26 final size:26
Alignment explanation
Indices: 19726795--19726847 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19726785 GTTGACTTAG
19726795 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19726821 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19726847 G
1 G
19726848 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19728596 original size:25 final size:25
Alignment explanation
Indices: 19728562--19728609 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
19728552 GTTGACTTAG
19728562 GCATACAGAGTTCATTCCCAGTCAA
1 GCATACAGAGTTCATTCCCAGTCAA
19728587 GCATACAGAGTTCATTCCCAGTC
1 GCATACAGAGTTCATTCCCAGTC
19728610 TAAGATCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCCAGTCAA
Found at i:19729498 original size:26 final size:26
Alignment explanation
Indices: 19729468--19729520 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19729458 GTTGACTTAG
19729468 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
19729494 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
19729520 G
1 G
19729521 ATCAGATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:19730825 original size:893 final size:896
Alignment explanation
Indices: 19725910--19736672 Score: 13071
Period size: 891 Copynumber: 12.0 Consensus size: 896
19725900 GTTGGCTTAG
* * *
19725910 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTAC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGA-CAGCACATGCTGG
* * ** * * * *
19725974 GCTTGGGCTTGTGCTGGTGCTTCATTTTTCTTCGTTGGGGCACCATCGCTGGAGAATCAC-CGGT
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCTCGGA
* * **
19726038 GAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGG-CTGGGGGGTGTGCTTACATGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
19726102 TGCGATGGGTGCTGGTAGC-TGGCCCTTATATTGGCCCCCTATCCC-GATTCAAACCTCGAGAAC
195 TGCGATGGGTGCTGGTA-CTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAAC
* *
19726165 TCACACCCCCTTAAAGAGCAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTTAAGTGTCT
258 TCACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
19726230 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCTAGTTTTTAGCTGAATTA
322 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * **
19726295 TTTTGTGCATGCCAACAAAAAA-ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTT
387 TTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* *
19726359 GAAAAAATTTTAAAAAAT-TTAGAACCGTAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAG
451 GAAAAAATTTTAAAAAATCTCA-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
19726423 TCGTCTTGCCATGAAAC-TAACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAA
515 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
19726487 AATGGCATTGGCAAGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
580 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** *
19726552 GCTTGCGCATCTCGTCTCTCTGGCCGAAATTGTGCCCGCCCGCCCGCTCGCCCGCCCCCCCGCTC
645 GCTTGCGCATCCCGTCTCTCTGGCC--------G---G--CG-TAGCT-G-CC-CCGCCCCGCTC
* * * *
19726617 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAAATCGGACCGGACCGAGGGT
693 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * * * * *
19726682 TGCAGCAACAAGATCAGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACC
758 TGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATCCCGCC
* * *
19726747 CCTCTGCCCGGTTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTC
823 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
19726812 CCAGTCTAA
888 CCAGTCTAA
* * * **
19726821 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCACAAGCTGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * *
19726886 ATCGGGCAAGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGCCGGAGCATC-ATCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCTGGAGCATCGCTCGGA
* * *
19726949 GAACCTGACCAGCGGCATTGGGTTTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
19727013 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
19727078 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCACTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19727143 ATGGGGACACTTTTTTCAAATGGTCAAAAAATGTTGTACACATCGAGTTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19727208 TGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* ** * *
19727272 ATAATTTTAAAAAATCTCGAACCGTAAAATTTTTGAAAAATCATGAAAAATAGAAAACGAGTTGT
455 A-AATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
19727337 CTTGCCACGAAACTTGACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
19727402 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
584 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
19727467 GCGCATCCCGGCTCTCTGGCTGACGTAGTGCCTGCCCGCTCGGCCCACCCGCTCGTTTTGTTGGT
649 GCGCATCCCGTCTCTCTGGCCGGCGTA--G-CTG-CC-C-C-G--C-CCCGCTCGTTTCGTCGGT
* * * * * * * *
19727532 TGACTTAGGCATACAGATTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCATCAA
704 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
* * * * * **
19727597 GATCGATAGCACGTAGAGTGGGACCCGGTCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGG
769 GATCGGTAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
19727662 CTGAGCGCCCGCACGCTCGTTTCTTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAA
834 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19727725 G-AT-C--AG---A----C--TC---GAT-----C--A---AGGGTTGCGGCAGCACA---T--G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
** *
19727759 -T---GC---T--T-GTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCTCGGAG
* * * * * * *
19727813 AACCTGACCGGCGGTATTGGGTTTTCGGCAATC-GGGGGGCCGGGGGGGTGTGCACACATCATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
19727877 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19727942 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19728007 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** * * * * *
19728072 TTGTAAGGGAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGACCAAAACTCCTTCCGAAAA
391 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * ** *
19728137 AATTTTAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCT
456 AATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * * ***
19728202 TGCCATGAAACTTCACATGAAAGCTTAAGAGATCATTGTTTGAATTTACAAAAAATAAAAATGGC
521 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * **
19728267 ATTGGCACGTAGAGATATGAAGACGTGCCTAAACCCACCTACCACCCTATCAATCCACGTTTTGC
586 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19728332 GCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCCACCCGCCGCCCCGCTCGTTTCGTCGGTTG
651 GCATCCCGTCTCTCTGGCCGGCGTA--G-CTG------CC-CCGCCCCGCTCGTTTCGTCGGTTG
** *
19728397 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTGGCGGCAGCAGGA
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* ** * * * *
19728462 TCGGTAACACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACT
771 TCGGTAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
19728527 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC-AA
836 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
19728587 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * * *
19728652 CTCGGGCATGTGCTGCTGTCACATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCG-TCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCTCGGAG
* * * * *
19728716 AACCTGACTGACGGCATTGGGGTTCCGACGATCAGGGGGG-CTGGGGGGTGTGTGCACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
19728780 GCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19728845 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
* *
19728909 ATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19728974 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* ** * ** * *
19729039 AAATTTTAATAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTC
455 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* **
19729104 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGG
520 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
19729169 CATTGGCACATAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCAATCCACGACTTA
585 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19729234 CGCATCCCATCTCTTTGGCCGACGTAG-TGCCCGCCCGTCCGTCCGCCCACTCATTTTGTCGGTT
650 CGCATCCCGTCTCTCTGGCCGGCGTAGCTG--C-CCCG-CC--CCG----CTCGTTTCGTCGGTT
* *
19729298 GGCTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGG
705 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * * *
19729363 ATCGGCAGCACGCAGAGAGGGACACGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
770 ATCGGTAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
19729428 TGAACGCCCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
835 TG-A-G--CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
19729493 A
896 A
* * ** *
19729494 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGA-CAGCACATGCTGG
*
19729558 GCTCGGGCATGTGATGGTGCCGCATTTTTC-T--TC---G--CCA------GAGCATCG-TCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCTCGGA
* ** ** *
19729608 GAACCTGACCGGCGGCATTAGGGTTCCGGTGATC-GGGGGGCC-AAGGGGTGTGCGTACATGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
19729671 TGCGATGGGTGCTGGTACTT-GCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * * *
19729735 AAACCCCCTTAAAAAGCATTTGAAATTTTACAGGTTTCCTGCCAGTAGCAATTAAAGTGTCTAAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19729800 ATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTCTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19729865 TGTGCATGCCAATAAAAATAGAAGGATCACGTCTACCAGGTTTGGGGCCAAAAATCCTTCCGAAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * *
19729930 AAATTTTAAAAAATCTCAAACCTTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGTC
455 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
19729995 TTGCCATGAAACTTCACGTGAAGGCCTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGG
520 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
19730060 CAATGGCACGTAGAAATAT-AAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
585 CATTGGCACGTAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
19730124 GTGCATCCCATCTCTCTGGCCGGCGTAG-TG-CCCG-CCCGCTCGTTTCGTCGGTTGGCTTAGGC
649 GCGCATCCCGTCTCTCTGGCCGGCGTAGCTGCCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *** * *
19730186 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAATAGCAGGATCAGCAGC
714 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGC
* * * * * *
19730251 ACACAGAGGGGGACACGATCGATTCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGGGCGCCT
779 ACGCAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
19730316 GCACGCTCGTTTTGTGGGTTGACTTAGTCATATGAAGTTCATTCCCAGTCTAA
844 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19730369 CCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* *
19730434 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGCT-GGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCTCGGAG
* * *
19730498 AACCTGACCGGCGGCATTGAGGTTCCGACGACCGGGGGGGCCGGGGGGGGTGTGCACACATGATG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
* *
19730563 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19730628 ACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** *
19730693 ATGGGGACACTTTTTTCAAATGGTCGTAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** **
19730758 TGTGCATGCCAAAAAAAATACGAGGATCACGTGTACCAAGTTTGGGGCCAAAAATTTTTTTGAAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* **
19730823 AAATTTTAAAAAATCCCAAACAC--AAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAG-CTG
455 AAATTTTAAAAAATCTCAAAC-CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC-G
* *
19730885 TCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAAT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19730950 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGCCT
583 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
19731015 TGCGCATCCCGTCTCTTTGGCCGGCATAGTTCCCGCCCGCCCGCCCTCCCGTTCGTTTAGTCAGT
648 TGCGCATCCCGTCTCTCTGGCCGGCGTAG---CTG--C-CCCG--C-CCCGCTCGTTTCGTCGGT
* ** * * *
19731080 TGGCTTAGGCATACGGAGCTCATTCGTAGTCTAAGATCAGACCAGACCGAGGGTTGTGCCAGTAG
704 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
** * *
19731145 GATCGACAGTACGCAGAGGGGGA-CC---CG------GGCTTGCGCATCCCGCCCCTCTGGCCGA
769 GATCGGTAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
19731200 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTTGGC-TACGAAGTTCATTCCCAGTCTAA
834 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
19731262 GCGTACGGAGTTCATTCCCAGCCTAAGATCAGACTGGACCGAGGGTTATGGCAGTAGATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * * * *
19731327 CTCGGGCATGTTCTGGTGCTGTATTTTTCTTCGCCAGGGCACCATCGCCGGAGAATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCTCGGAG
* * * * * * *
19731391 AACCTGACCGGTGACATTGGGATTCCGATGATCGGTGGGGCCGGGCGGGTGTGCGCACGTGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
19731456 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATGAAACCTCGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19731521 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
*
19731584 ATGGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
19731648 TATGCATACCAAAAAAAATACAAGGATCACGTCTACAAAGTTTCGGGCCAAAACTCTTTCCGAAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
**
19731713 AAATTTTAAAAAATCT-AGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
455 AAATTTTAAAAAATCTCA-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
19731777 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
19731842 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCTTATAGATCCACGGCTT
584 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
19731907 GCGCATCCCGTCACTCTGGCCAGCGTAGTGTCTGCCCGCCCACCCGCCCACTCATTTCGTCGATC
649 GCGCATCCCGTCTCTCTGGCCGGCGTA--G-CTGCCC-CGC-CCCG----CTCGTTTCGTCGGTT
* * * * *
19731972 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACCTGAGGGTTGCAGCAGCAA
705 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-GAGGGTTGCGGCAGCAG
* * * * * *
19732037 GATCGGTAGCATGTAGAGGGGGATCCGATTGATTGCCGGCTTGCGCATCTCGCCCCTCTGGCCGG
769 GATCGGTAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* ** ** *
19732102 CTGAGCGCTCGCACATTCAATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
834 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
19732165 GCATACGGAGTTCATTCCCAGTCCAACATCCGACCGGACTAAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
** * * *
19732230 CTCGGGCATGTGCTGGTGTTGCATTTTTCTTCGTCAGGGCACCTTCG-TCGGAGCGTCGC-CGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGCTCGGA
* * *
19732293 GAACCTGATCGACGGCATTGGGGTTCCGCCGATCGGGGGGGCCGGGGGAGGGTGTGCGCACATGA
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGGTGTGCGCACATGA
*
19732358 TGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
19732422 TCACA-CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGTCAATAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
19732486 AAATGGGGACACTTTTTTCAAATGGACCCAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* ** * * * * *
19732550 TTTTTGCATGCCAAAAAAAATATTAGGATCCCGTCTACAAAGTTTCGGGCCAAAAATCTTTTCGA
388 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* ** * *
19732615 AAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCG
453 AAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
19732680 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19732745 GGCATTGACATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCT
583 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * * *
19732810 TGCGCATCTAGTCTCTCTGGCCGGCATAG-TGCCCACCCGCCCGCTCGTTTCGTCAGTTGGCTTA
648 TGCGCATCCCGTCTCTCTGGCCGGCGTAGCTGCCC-CGC-CCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * * *
19732874 GGCATATGAAGTTCATTCCCAGT-TGAAGATTGGATC-GAATCGAGGGTTGTGGCAGCAGGATCG
711 GGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
19732937 GTAGCACGAAGAGGGGGACCCGA-CCAATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGACTGA
774 GTAGCACGCAGAGGGGGACCCGATCGATTCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
19733001 GCGCCCGCACGTTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** * * *
19733060 GCATACGGAATTCATTCCCAGTCTAAGATTGGATTGGACCAAGGGTTGCGACAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * *
19733125 CTCAGG-ATGTGCTGGTACCGCATTTTTCTTCGTCGGGGCACTATCG-TCGGAGCATCG-TCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGCTCGGA
* * * *
19733187 GAACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGTACAAGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
19733251 TGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** *
19733316 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCATTTAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19733381 TTGGGGACACTTTTTCCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19733446 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCATTTTC-AA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC-CTTCCGAA
19733510 AAAATTTTAAAAAATCTCGAACACC--AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
454 AAAATTTTAAAAAATCTC-AA-ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
19733573 ATTTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
517 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
19733638 TGGCATTGGCACATAGAAATAGGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGC
582 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
19733703 TTGCGCATCCCGTCTCTCTGGCCGACGCAGTGGTCACCCGCCCGTCTACCTGCCCGCCTGCCTGC
647 TTGCGCATCCCGTCTCTCTGGCCG--GC----GT-A-------G-----CTG-CC-CC-G-C--C
* *
19733768 CCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACC
687 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * ** *
19733833 AAAGGTTGCGGTAGCAGGATCGGTAGCATACAGAGGGAGACCCGATCGATCCTCCC--CTTGCGC
752 GAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGAT--TCCCGGCTTGCGC
* * * *
19733896 ATCTCGCCCCTCTGGCCGACTGAGCGCCCGAACGCTCGTTTTGTGGGTTGACTTAGGCATACGGA
815 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
19733961 GTTCATTCCCAG--T--
880 GTTCATTCCCAGTCTAA
*
19733974 -C-TA---AG---------A-T-T--G----GACCGGACCGAGGGTT-CGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * ** * *
19734016 TTGGGGTATGTGCTGGTGCCGCATTTGTCTTCACCGGGGCACCAACG-TCAGAGCATCGCT-GGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGCTCGGA
* * * ** *
19734079 GAACCTGACCGGCGACATTGGGGTTTC-AGCAATCGGGGGGGCCGGCTAGGGTGTGCGCACACGA
130 GAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGA
*
19734143 TGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
19734208 TCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTA
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
19734272 AAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
19734337 TTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCTGA
388 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * * * * * * * *
19734402 AAAAATTTTGAAAAATCCCGAA-CGCAAAAATTTTCGAAAATCATGAAAAATAGAACATGAGTCA
453 AAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
19734466 TCTTGCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
518 TCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
19734531 TGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATGCACGGC
582 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
19734596 TTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCTCGCACGCCCACCCACCCACTCGTTTCATCGG
647 TTGCGCATCCCGTCTCTCTGGCCGGCGTA--GCT-----GCCC-CGC-CCCGCTCGTTTCGTCGG
* * * * * * *
19734661 TTGGCTTAGGAAAACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGGTAGCA
703 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * * * * *
19734726 AGATCAGTAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCCCATCCCGCCCCTCTGGTCG
768 GGATCGGTAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
19734791 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
833 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
19734855 GCATACGGAGTTCATT-CCAGTCAAAGATCGGATCAGATCGAGGGTTCCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* ** ** *
19734919 CTCGAGCATGTGCTGGTGCCAAATTTTTCTTCACCGGGGCACCA----T----CA----TCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCTCGGAG
* * * *
19734972 AACCTGACCGACGGTATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGGGTGTGCACACACGATG
131 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
19735036 TGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
19735101 ACACCCCCTTAAATAGCGTCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
19735166 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * *
19735231 TACGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * *
19735295 AAATTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
455 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
19735360 GTT-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
520 -TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
19735424 GCATTGGCACCCAGAAATATGAAGATGTACCTAAACCCAACTATCACCCTATCGATCCACGGCTT
584 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
19735489 ACGCGTCCCGTCTCTCTGGCCGGCGT-GATGCCCCCCCCGTCCGCTCGTTTCTTCGGTTGGCTTA
649 GCGCATCCCGTCTCTCTGGCCGGCGTAGCTG-CCCCGCC--CCGCTCGTTTCGTCGGTTGGCTTA
* ** * *
19735553 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCAAGGGTTTTGGCAGTAGGATCGA
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCAGGATCGG
* * * *
19735617 TAGCACACAAAGGGGGACCC-AGTCGA-TCCCTGACTTGCGCATCCTGCCCCTCTGGCCGGCTGA
775 TAGCACGCAGAGGGGGACCCGA-TCGATTCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
19735680 GCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
838 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
19735739 GCATATGCAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * **
19735804 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-CCTGGGGCACCACCGCCGGAGCATC-AACGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCTGGAGCATCGCTCGGA
* *
19735867 GAATCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
19735932 TGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACGTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19735997 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19736062 ATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19736127 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAAGCCTTCCGAAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* ** *
19736192 AAATTTTAAAAAATCCCAAACCG-AAAATTTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
455 AAATTTTAAAAAATCTCAAACCGTAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
19736256 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCAATAAAATTG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
19736321 GCATTGGCATGCAGAAATATGAAGATGTACCAAAATCCACCTACCACCCTATCGATCCACAGCTT
584 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19736386 GCACATCCCATCTCTCTGGTCGGCGTAGTGCCTGCCCGTCTGCCTGTCCGCTCGTTTCGTCGGTT
649 GCGCATCCCGTCTCTCTGGCCGGCGTA--G-CTGCCC--C-GCC---CCGCTCGTTTCGTCGGTT
* * * * * * * * *
19736451 GGATTAGGCATATGGAGTTCATTTCTAGTCTAAGATCAGACCAAACTGAGGGTTGTGGTAGCAAG
705 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * * ** *
19736516 ATCGGCAACACGCAGAGGGGGACCCGACCG-GTCCCGGCTTAAGTATCCCGCCCCTCTGGCCGGC
770 ATCGGTAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
19736580 TGAGCGCTCGGACGCTCGTTTCATGGGTTGACTTAGGCGTA-GAGAGTTCATTCCCAGTCTAA
835 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCCAGTCTAA
*
19736642 GCATACGGAGTTCATTCCCAGTCTAGGATCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA
19736673 AATCGGACTG
Statistics
Matches: 8624, Mismatches: 952, Indels: 560
0.85 0.09 0.06
Matches are distributed among these distances:
862 11 0.00
863 711 0.08
864 8 0.00
866 4 0.00
867 1 0.00
868 5 0.00
869 3 0.00
872 1 0.00
873 1 0.00
875 140 0.02
876 4 0.00
877 179 0.02
878 21 0.00
879 135 0.02
880 3 0.00
881 4 0.00
882 2 0.00
883 17 0.00
884 201 0.02
885 82 0.01
886 3 0.00
887 11 0.00
888 23 0.00
889 44 0.01
890 106 0.01
891 1053 0.12
892 834 0.10
893 872 0.10
894 492 0.06
895 195 0.02
896 365 0.04
897 196 0.02
898 7 0.00
899 12 0.00
900 31 0.00
901 5 0.00
902 210 0.02
903 853 0.10
904 783 0.09
905 67 0.01
906 51 0.01
907 83 0.01
908 1 0.00
909 10 0.00
910 220 0.03
911 371 0.04
912 5 0.00
913 1 0.00
914 2 0.00
915 3 0.00
916 2 0.00
917 1 0.00
918 171 0.02
919 4 0.00
921 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCTCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
AATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCGTAGCTGCCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
GCAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19731275 original size:26 final size:26
Alignment explanation
Indices: 19731239--19731288 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19731229 TGACTTTGGC
*
19731239 TACGAAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGCCTAAGCG
*
19731265 TACGGAGTTCATTCCCAGCCTAAG
1 TACGAAGTTCATTCCCAGCCTAAG
19731289 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGCCTAAGCG
Found at i:19733073 original size:26 final size:26
Alignment explanation
Indices: 19733034--19733086 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19733024 GTTAACTTAG
*
19733034 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19733060 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19733086 G
1 G
19733087 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:19735742 original size:26 final size:26
Alignment explanation
Indices: 19735713--19735765 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19735703 GTTGACTTAG
* *
19735713 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
*
19735739 GCATATGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
19735765 G
1 G
19735766 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:19737146 original size:26 final size:26
Alignment explanation
Indices: 19737117--19737166 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19737107 GTTGACTTAT
19737117 GCATATGGAGTTCATTCCCAGTCTGA
1 GCATATGGAGTTCATTCCCAGTCTGA
*
19737143 GCATATGGAGTTCATTCCTAGTCT
1 GCATATGGAGTTCATTCCCAGTCT
19737167 AAGATCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTGA
Found at i:19738195 original size:26 final size:26
Alignment explanation
Indices: 19738159--19738210 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19738149 TTGACTTAGT
19738159 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19738185 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
19738211 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:19738869 original size:8 final size:8
Alignment explanation
Indices: 19738856--19738887 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
19738846 CCAGCGTAGT
*
19738856 GCCCGCCC
1 GCCCGCTC
19738864 GCCCGCTC
1 GCCCGCTC
19738872 GCCCGCTC
1 GCCCGCTC
19738880 GCCCGCTC
1 GCCCGCTC
19738888 ATTTCATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.66, G:0.25, T:0.09
Consensus pattern (8 bp):
GCCCGCTC
Found at i:19739091 original size:26 final size:26
Alignment explanation
Indices: 19739054--19739106 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19739044 GTTGATTTAG
*
19739054 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
19739080 GCATAC-AGAGTTCAATCCCAGTCTAA
1 GCATACGA-AGTTCAATCCCAGTCTAA
19739106 G
1 G
19739107 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:19740381 original size:4 final size:4
Alignment explanation
Indices: 19740364--19740393 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
19740354 CCGGCGTAGT
*
19740364 GCCC GCCC GTCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
19740394 TTGTTTCGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.70, G:0.27, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:19741503 original size:26 final size:26
Alignment explanation
Indices: 19741467--19741517 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19741457 TGACTTAGGT
19741467 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
19741493 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19741518 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19741505 original size:891 final size:881
Alignment explanation
Indices: 19739350--19746497 Score: 4065
Period size: 901 Copynumber: 7.8 Consensus size: 881
19739340 ACGAGTCGTC
* * * * *
19739350 TTGTGATGAATTTACAAGCCATGAAAATGGCATTGGCACGTAGAAATATGAAGGTGTACCTAAAC
1 TTGT-ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * ** ** **
19739415 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTA-GTGCCCGC
65 CCACCTACCACCCTATCGATCCACGGCTTGCGTA-GT-G-C-C-C--GCCCACCCACCCGCCCGC
* * * * *
19739479 CCGCCCGCTCATTTCGTCGGTTAGCTTAGGCATAAGGAGTTCATTCCTAGTCTAAGATCAGACCG
123 CCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCA
* * * *
19739544 GACCAAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGC
188 GACCTAGGGTTGCGGCAGCAAGATCAGCAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTGC
* * * * *
19739609 ACATCTCGCCCCTCTGG-CAGCTGAACGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACA
252 ACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
* *
19739673 GAGTTCATTCCCAGTCTAAGAATACGCAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGT
317 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGT
* *
19739738 TGCGAGAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCCCCGGGGCACCATC
381 TGCG-GAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
* * * *
19739803 GTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTAGGGTTTCGACGATC-TGGGGGC-AGGGG
445 GTCGGAGCATCGCCGGAGAACCTGACAG-CGGCATT-GGGTTTCGGCGATCGGGGGGGCGAGGGG
19739866 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
508 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
19739931 CAAACCTCGAGAACCCACACCTCCTGAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGC
573 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
19739996 AATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTT
638 CATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTT
* *
19740061 TTTAGCTGAATTTTTTTGTGCATG-CTAAAAAAATACAAGGATCAAGTCTACCAAGATTGGGGCC
702 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAA-ATTTGGGCC
* ** * *
19740125 AAAACTCCTTCCAAAAAAATTTTAAAGAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
766 AAATCTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTC-AAAATCGTGAAAAA
* *
19740190 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGATCA
830 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
19740242 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
1 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
*
19740307 CACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCC
66 CACCTACCACCCTATCGATCCA-------CG------G---CT-T-----GCGTAGTGCCCGCCC
** * * * *
19740372 GTCCGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
109 ACCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
19740437 CTAAGAT-AAGACCAGA-CTGAGGGTTGCGGCAGCAGGGTCAGCAACACCCAGAGCGGGACCTGG
174 CTAAGATCAA-ACCAGACCT-AGGGTTGCGGCAGCAAGATCAGCAGCACGCAGAGGGGGACC-CG
* * *
19740500 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTAGG
236 CCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
19740565 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATC
301 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
19740630 GGATCGGACCGAGGGTCGCGGTAGCACGTGCTAGGC-CAAGGCATGTGCTGGTGCCGCATTTTTT
366 AGA-CGGACCGAGGGTTGCGG-AGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCGCATTTTTC
*** * * *
19740694 TTCGTTGGGGCACCATCGGCGAAGCATCGCCGGAGAACCTGACTAGCGACATTGGGTTTCAGGCG
428 TTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC-AGCGGCATTGGGTTTC-GGCG
*
19740759 ATCGGGGGGGGGCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATA
491 ATC--GGGGGGGCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
19740824 TTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTA
554 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
19740889 CAAGTTTGCTGCCAGCAGCCATTAAAGTGTC-GAAAATGGTGACACTTTTTTCAAATGGTCACAA
619 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGG-GACACTTTTTTCAAATGGTCACAA
* * *
19740953 AATTTTGTACACATCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAATGATCA
682 AATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * *
19741018 TGTCCACCAAATTTGATGCCAAATCTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGCAAAAA
747 AGTCTACCAAATTTG-GGCCAAATCTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGCAAAAA
* *
19741083 GTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAA
811 GTTTCAAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
19741148 GGGACCA
875 GGGACCA
* * * *
19741155 TTGTATGAATGTACGAGCCATAAAAATGGCATTGGCATGCAGAAATGTGAAGATATGCCTAAACC
1 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
19741220 CACATACCATCCTATCGATCCACGGCTTGCGTAGTGCCCGCCCACCCACCCGCCTGCCCGCCCGC
66 CACCTACCACCCTATCGATCCACGGCTTGCGTAGTGCCCGCCCACCCACCCGCCCGCCCGCCCGC
*
19741285 TCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAAACCAGACCTAGG
131 TCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCTAGG
* **
19741350 GTTGCAGCAGCAAGATCAGCAGCACGTGGAGGGGGACCCAGCCGATCCCCGGCTTGCACATCCCG
196 GTTGCGGCAGCAAGATCAGCAGCACGCAGAGGGGGACCC-GCCGATCCCCGGCTTGCACATCCCG
* * *
19741415 CACCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCAT
260 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
* *
19741480 TCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAG
325 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGG-AG
* * **
19741545 CATATGCTGGGCTC-GAGCATGTGCTGGCGCCATATTTTTCTTCACCGGGGCACCATCGTCGGAG
388 CACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAG
* * * * * ** * *
19741609 CGTCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGATGGGCCGAGGGGGGGTGCG
452 CATCGCCGGAGAACCTGA-CAGCGGCATT-GGGTTTCGGCGATCGGGGGGGCGA--GGGGGTGTG
19741674 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
513 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
19741739 CTCAAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAATA
578 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
19741804 AAGTGTCTGAAATGCGAACACTTTTTTCAAATGGTCA-AAAATTTTGTACACTTTGAGTTTTT-G
643 AAGTGTCTGAAATG-GGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAG
* * *
19741867 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAAT
707 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAATTT-GGGCC-AAAT
* * * *
19741932 -GCCTTCTGAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGA
770 CTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAG-TTTCAAAATCGTGAAAAATAGA
* *
19741996 AAATGAGTC-T-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCG
834 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* **
19742042 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAAAC
1 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAAC
* * ** ** *
19742107 CCACCTACCACCCTATCGATCCATGGCTTGTGCATCCTGTCTCTCTAGCCGGCGCAGTGCCCGCC
65 CCACCTACCACCCTATCGATCCACGGC-T-TGCGTAGTG-C-C-C--GCCCACCCA---CCCGCC
* * * * * * *
19742172 CGCCACCCGCTCGCTCGTTTTGTCAGTTGGCTTAGGCATAAGGAGTTCATTCCTACTCTAAGATC
120 CG---CCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * * * *
19742237 GAACCGGATCGAGGGTTACGGTAGCAGGATC-GACAGCACGTAGAGGGGGACCCGATCAATCCCT
182 AAACCAGACCTAGGGTTGCGGCAGCAAGATCAG-CAGCACGCAGAGGGGGACCCG-CCGATCCCC
** * * ** * * *
19742301 GGCTTGCGTATCCCACCCTTCTAGGCCTACCGATCCATGGCTTGCGCATC-C-CGTCTCTC-T-G
245 GGCTTGCACATCCCGCCCCTCT-GGCCGGCTGA-GC---GC--CCGCA-CGCTCGT-T-TCGTGG
** * ** * * * * ** * *
19742362 GCCGGCGCAGTGCCCACCCGTCACCCGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTT
300 GTTGACTTAG-G--CA----T-A-CAG--AGTTC--ATTCCCAG-T--C-TAAGCATACGGAGTT
* * * * * * *
19742427 CATTCCTACTCTAAGATC-GAACCGGATCGAGGGTTACGGTAGCAGGAT-C---G-ACA-GCACG
348 CATTCCCAGTCTAAGATCAG-A-CGGACCGAGGGTTGCGG-AGCA-CATGCTGGGCTCAGGCATG
** * ** * * * *
19742485 TGGAGGGGGACC-C---GGTCAATCCCCGGCTTGCGCATCCCACCCCTCTGGTCAGCTGAGT-GC
409 T-GCTGGTG-CCGCATTTTTC-TTCACCGG---G-GCA--CCA-TCGTC-GG--AGC--A-TCG-
* ** ** * * * ** * * ***** * *
19742545 CCGCACGCTCCTTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
457 CCGGA-GAACCTGAC-AGCG--GCATT-GGGTTTCGGCG---A-T--C-GGGGGGGC-GA-GGGG
* * * * * * * * * ***
19742610 TTCATTCCCAGTCTAAGATCG-GACAGGACCAAGGGTTACGGCAGCACATTCTAGGCTCGGGCAT
508 GT-GTGCGCA--C-ATGAT-GTG-C--G---ATGGG-TGCTG--GTAC--T-T-GGC-C-CTTAT
*** * *** * ** * * * ** * **
19742674 -TTGCTAGTGTCGTATTTTTCTTC--A--TCG-GGGCAC-CATCACC--GGAGCATCATCGGAGC
553 ATTG---GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-AGCATTTGAG-
** * **** * * ** * ** * * ** * *******
19742730 ATCAT-CGGGGAACCTGACTGGCGACATTAGGGT-TCCGGCAATTGGG---GGTGTCGGGGGGGT
613 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTG-AAATGGGACACTTTTTTCAAATG-
* ** * * ** * * * * *
19742790 GTGCAC-ACATGATGTGCGA-TGGGTGCTAGTACTTGGC--CATTATATTG-GCCCCCTATCCCT
675 GT-CACAAAATTTTGTAC-ACT---T-CGAGTTTTTAGCTGAATTTTTTTGTG----C-AT-GC-
** ** ** * ** * * * * *
19742850 CATCAAACCT-TGAGAACTCACAACCCCTTA-AAGAGCATTTGAG---ATTTTACAGGTTTGCTG
727 CAAAAAAAATACAAGGA-T--CAA-GTC-TACCA-A--ATTTGGGCCAAATCT-C---CTT-CTG
** **** *** ** * * ** * * *** *
19742910 CCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACATTTTTC-AAATGGTCACAAAATCTTATAC
779 --AAAAAATTTTAAAAAATCTTG-AA-CCGCA-AAAAGTTTCAAAATCGTGA-AAAATAGAAAAC
* * *** * * * * * * *
19742973 -ACTTCGAGTTTTTAGATG-AATTTTATTGTGCAAGCCAAAAAAAGTACAAGGATCA
838 GA-GTC--GTCTTGCCATGAAACTTCA-CGTG-AAGGC-------TTA-AGGGACCA
* * ** * * * * * *** ** *
19743028 CGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA-AG-TTTAAAAAAT-CCCAAA-CTGTA
1 -TTGTATGAA-TTT------ACAA-GCCAT---AAAAATGGCATT--GGCATGCAGAAATATG-A
* * * ** ** ** ** ** * * * * *
19743089 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGT
51 AGATG-TGCCTAAA-C---CCACCTACCACCCTA-TCG--AT-CCACG--GCTT-GCGT--A---
* * ** * * *
19743154 GTGCCCAAACCCACCTACCATCCTATCGATCCACGGCATGCGCATCCGATCTCTCTGGCCGGCGT
99 GTGCCC--GCCCACCCACCCGCC---CG--CC-C-GC--CCGC-T-CG-T-T-TC--GTCGG-TT
* * * ** * ** * * ** *
19743219 AGCGCCT-GCCCGCATGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTA
145 A--GCTTAG---GCATAC-GGAGT--TC-ATT--CCCAGTC-TA---AGATCA-AACCAGACCTA
* * * **
19743282 AGTTTAGACCAGGCTGAGGGTTGCAGTAGTAGGATCAGCAGCACGTAGAGGGGGACCCAATCGAT
194 GGGTT-G--C-GGC--A-G----C---A--A-GATCAGCAGCACGCAGAGGGGGACCC-GCCGAT
* * ** * * * *
19743347 CCCTGACTTGTGCATCCCGCCCCTCTGGCCTGCTGAGCGTCCGCATGCTCATTTCGTGGGTTGAC
241 CCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
*
19743412 -T-----T--AG-G--CA-T---A--C---G---A---AGTTCATTCCCAATCTAAGATCAGATC
306 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-C
* * ** * **
19743451 GGACTGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC
370 GGACCGAGGGTTGCGG-AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* * ** * * * * *
19743516 AGGGCACCAACACCGGAGCATCACCGAAGAACCTGATC-GACGGCATTGGGGTTCCGACGATTGG
434 GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA-CAG-CGGCATT-GGGTTTCGGCGATCGG
* * *
19743580 GAGGGCCGAGGGGGTGTGCGTACATGATGTGCGCACATGACGTGCGATGGGTGCGAGTACTTGGC
496 G-GGGGCGAGGGGGTGTGCGCACATGATGTGCG---AT---G-G-G-T-GCT--G-GTACTTGGC
*
19743645 CTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
547 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
19743710 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAGTGGGGACACTTTTTTCAAATGG
612 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGG
* * *
19743775 TCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
676 TCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * * * * ***
19743840 GGATCACGTCTACGAAGTTTGGGGCTAAAACTCCTTTTGAAAAAATTTTAAAATATCCCAAACCG
741 GGATCAAGTCTACCAAATTT-GGGCCAAATCTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCG
* * * * *
19743905 TAAAAGGTTTCGAAAGTCATGAAAAGTAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
805 CAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
19743970 GCTTAAGGGACCA
869 GCTTAAGGGACCA
*
19743983 TTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACC
1 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
19744048 CACCTACCACCCTATCGATCCACGACTTGCGGA-TCCCGTCTCTCTGGCTGGCGTAGTGCCCACA
66 CACCTACCACCCTATCGATCCACGGCTTGCGTAGT---G-C-C-C--GC---C-CA---CCCACC
* * ** * * *
19744112 CGCCCGCCTGCCCGCTCATTTCGTAAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGAT
116 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * * * * * * *
19744177 CAGACCAGACCGAAGGTTACGACAACAGGATCAGTAGCACACAGATGGGGACTCGATCGATACTC
181 CAAACCAGACCTAGGGTTGCGGCAGCAAGATCAGCAGCACGCAGAGGGGGACCCG-CCGATCCCC
* * ** * * * *
19744242 GGCTTGCGCATCCTGCCCCTCTGGCCTACTGAGCGCCCGCACACTCGTTTCATCGGTCGACTTAG
245 GGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
19744307 GCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCAAACCGGAC
310 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGAC
* * * * **
19744372 CGAAGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTA-TTTTCTTCGTCGGGG
374 CGAGGGTTGCGG-AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
** * ** * * * * *
19744436 CACCATCACCGTAGCATCATCGGAGAACCTGGCCGGCGGTATTGGGGTTCCGACGATCGGGGGGG
438 CACCATCGTCGGAGCATCGCCGGAGAACCT-GACAGCGGCATT-GGGTTTCGGCGATCGGGGGGG
* *
19744501 CCG-GGGGGTATGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
501 -CGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
19744565 TCCCTCATCAAACCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
565 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
19744630 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTATACAC
630 CCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATTTTGTACAC
* * * * * *
19744695 TTCGAGTTTTTAGATGAATTTTATTGTGCAAGCCAAAAAAAGTACAAGGATCACGTCTACCAAGT
694 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAAT
* * * * *** *
19744760 TTGGGGCCAAAACACCTTCCGAAAAAAGTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATC
759 TT-GGGCCAAATCTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTC-AAAATC
* * *
19744825 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAGGGCTTAATGGACCA
822 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * * * *
19744885 CTGTATGAATTTACAAGCCATAAAAAT-ACATTGGCACGTAGAAATATGAAGATGCGCCTAAACA
1 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* ** ** ** *
19744949 CACCTACCACCCTATCGATCCACGGCTTGCACATCCTGTCTCTTTGGTCGGCGTAGTGCCCGTCT
66 CACCTACCACCCTATCGATCCACGGCTTG--CGTAGTG-C-C------C-GCCCA---CCCACCC
** * * * *
19745014 GCCCGCCTACCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATT
117 GCCCGCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** * ** * * * * * * * *
19745079 GGACC-GAACCAAGGGTTGCGATAGTAGGATCGGTAGCACGCAGAAGGGGACCCGGTCGAACCTC
182 AAACCAG-ACCTAGGGTTGCGGCAGCAAGATCAGCAGCACGCAGAGGGGGACCC-GCCGATCCCC
* *** * * * * * *
19745143 GACTTATGCATCCCGCCCCTCTGGCCGGCTGGGTGCCTGCATGCTTGTTTCATGGGTTGACTTAG
245 GGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
19745208 GCATAC-G-GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGAACAGAC
310 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACGGAC
* * * * * * * **
19745271 CGAGGGTTACGACAGCACATGTTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTACGTCGGGG
374 CGAGGGTTGCG-GAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * *
19745336 CACCATCGCCGGAGCATCGTCGGAGAACCTGATC-GACGGCATTAGGGTTCCGACGATCAGGGGG
438 CACCATCGTCGGAGCATCGCCGGAGAACCTGA-CAG-CGGCATT-GGGTTTCGGCGATC-GGGGG
* * *
19745400 GTC-AGGGGGGTGTGCACACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
499 GGCGA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
19745464 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGC
563 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
19745529 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGCACACTTTTTTCAAATGGTCGCAAAATCTTGTAC
628 TGCCAGTAGCCATTAAAGTGTCTGAAATGGG-ACACTTTTTTCAAATGGTCACAAAATTTTGTAC
* * * * * * * *
19745594 ACTTCAAGTTTTAAGATAAATTTTTTTATGCATGCCAGAAAAAATACAAGGATCACGTCTACTAA
692 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAA
* * ** * *
19745659 ATTTGGGGCCAAAACTCCTT-TTAAAAAATTTTTAAAAAATCCCGAACCGTACAAAGTTTCAATA
757 ATTT-GGGCCAAATCTCCTTCTGAAAAAA-TTTTAAAAAATCTTGAACCGCAAAAAGTTTCAA-A
* * *
19745723 ATCGTGAAAAATAGAAAACGAGTCGTCTT-TCATGATACTTCATGTGAAGGCTTAAGGGACCA
819 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
19745785 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACC
1 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
19745850 CACCTACCACCCTATCGATCCACGGCTTGCGCA-TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
66 CACCTACCACCCTATCGATCCACGGCTTGCGTAGT---G-C-C-C--GCC--C--A---CCCACC
* * * **
19745914 CGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGAT
116 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
19745979 CAGACCGGA-TTGAGGGTTGCGGCAACAGGATC-GACAGCATGCAGAGGGGGACCCGGTCGATTC
181 CAAACCAGACCT-AGGGTTGCGGCAGCAAGATCAG-CAGCACGCAGAGGGGGACCC-GCCGATCC
* * * * *
19746042 TCGGCTTGCCCATACCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTT
243 CCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * *
19746107 AGGCATA-AGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCCTTCCCAGTCTATGATCGGACCA
308 AGGCATACA-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CG
* * * * * ** **
19746171 GACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCAAGTGCTGGCGGTGCATTTTTCTTCGTCG
371 GACCGAGGGTTGCG-GAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
* * * * *
19746236 GGGCACCATCGTCGAAGCATCGCCGGAGAACCTGATCGGTGGCATTGGGGTTCTGACGATCGGGG
435 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA-CAGCGGCATTGGGTTTC-GGCGATCGGGG
* * ** *
19746301 GGTCGGAGAGGGTGTGCGCACATGATGTGCTTTGGGTGCTGGTACCTGGCCCTTATATTGGCCCC
498 GGGC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
19746366 CTATCCCTCATCAAACCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
562 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* **
19746431 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAACCTTGTA
627 CTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATTTTGTA
19746496 CA
691 CA
19746498 NNNNNNNNNN
Statistics
Matches: 4820, Mismatches: 996, Indels: 869
0.72 0.15 0.13
Matches are distributed among these distances:
887 87 0.02
888 29 0.01
889 119 0.02
890 42 0.01
891 653 0.14
892 20 0.00
893 1 0.00
894 1 0.00
895 6 0.00
896 3 0.00
897 7 0.00
898 10 0.00
899 95 0.02
900 136 0.03
901 893 0.19
902 374 0.08
903 327 0.07
904 9 0.00
905 6 0.00
906 14 0.00
907 152 0.03
908 211 0.04
909 7 0.00
910 2 0.00
911 13 0.00
912 219 0.05
913 216 0.04
914 4 0.00
915 27 0.01
916 68 0.01
917 78 0.02
918 14 0.00
919 5 0.00
920 12 0.00
921 6 0.00
922 4 0.00
923 4 0.00
924 53 0.01
925 7 0.00
926 4 0.00
927 1 0.00
928 4 0.00
929 2 0.00
930 6 0.00
931 6 0.00
932 12 0.00
933 4 0.00
934 13 0.00
935 5 0.00
936 4 0.00
937 1 0.00
938 4 0.00
939 12 0.00
940 1 0.00
941 6 0.00
942 5 0.00
943 12 0.00
944 10 0.00
945 9 0.00
946 5 0.00
947 3 0.00
948 1 0.00
951 4 0.00
952 6 0.00
953 5 0.00
954 21 0.00
955 30 0.01
956 16 0.00
957 12 0.00
958 10 0.00
959 6 0.00
960 4 0.00
961 2 0.00
962 13 0.00
963 12 0.00
964 12 0.00
965 13 0.00
966 14 0.00
967 21 0.00
968 2 0.00
969 7 0.00
970 8 0.00
971 3 0.00
972 22 0.00
973 17 0.00
974 6 0.00
975 9 0.00
976 17 0.00
977 15 0.00
978 12 0.00
979 13 0.00
980 14 0.00
981 15 0.00
982 38 0.01
983 16 0.00
984 12 0.00
985 6 0.00
986 5 0.00
987 6 0.00
988 4 0.00
991 10 0.00
992 1 0.00
993 5 0.00
994 9 0.00
995 4 0.00
996 4 0.00
997 15 0.00
998 10 0.00
999 2 0.00
1000 4 0.00
1001 50 0.01
1002 4 0.00
1003 3 0.00
1004 6 0.00
1005 14 0.00
1006 8 0.00
1007 8 0.00
1008 11 0.00
1009 3 0.00
1010 1 0.00
1011 6 0.00
1012 1 0.00
1013 2 0.00
1014 1 0.00
1015 1 0.00
1016 1 0.00
1018 3 0.00
1019 2 0.00
1020 1 0.00
1021 3 0.00
1022 1 0.00
1023 4 0.00
1024 386 0.08
1025 552 0.11
1026 576 0.12
1027 659 0.14
1028 483 0.10
1029 658 0.14
1030 540 0.11
1031 497 0.10
1032 549 0.11
1033 495 0.10
1034 368 0.08
1035 434 0.09
1036 507 0.11
1037 467 0.10
1038 360 0.07
1039 437 0.09
1040 449 0.09
1041 342 0.07
1042 446 0.09
1043 389 0.08
1044 326 0.07
1045 362 0.08
1046 330 0.07
1047 296 0.06
1048 552 0.11
1049 221 0.05
1050 422 0.09
1051 330 0.07
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (881 bp):
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGTAGTGCCCGCCCACCCACCCGCCCGCCCGCCCGC
TCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCTAGG
GTTGCGGCAGCAAGATCAGCAGCACGCAGAGGGGGACCCGCCGATCCCCGGCTTGCACATCCCGC
CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCGGAGCAC
ATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC
GCCGGAGAACCTGACAGCGGCATTGGGTTTCGGCGATCGGGGGGGCGAGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAATTTGGGCCAAATCTCCTTCTGAA
AAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
Found at i:19742481 original size:208 final size:208
Alignment explanation
Indices: 19742118--19742526 Score: 710
Period size: 208 Copynumber: 2.0 Consensus size: 208
19742108 CACCTACCAC
* * * *
19742118 CCTATCGATCCATGGCTTGTGCATCCTGTCTCTCTAGCCGGCGCAGTGCCCGCCCGCCACCCGCT
1 CCTACCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGCAGTGCCCACCCGCCACCCGCT
19742183 CGCTCGTTTTGTCAGTTGGCTTAGGCATAAGGAGTTCATTCCTACTCTAAGATCGAACCGGATCG
66 CGCTCGTTTTGTCAGTTGGCTTAGGCATAAGGAGTTCATTCCTACTCTAAGATCGAACCGGATCG
* *
19742248 AGGGTTACGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCAATCCCTGGCTTGCGTATC
131 AGGGTTACGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCAATCCCCGGCTTGCGCATC
19742313 CCACCCTTCTAGG
196 CCACCCTTCTAGG
* *
19742326 CCTACCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCACCCGTCACCCGCT
1 CCTACCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGCAGTGCCCACCCGCCACCCGCT
* *
19742391 CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTACTCTAAGATCGAACCGGATCG
66 CGCTCGTTTTGTCAGTTGGCTTAGGCATAAGGAGTTCATTCCTACTCTAAGATCGAACCGGATCG
* *
19742456 AGGGTTACGGTAGCAGGATCGACAGCACGTGGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATC
131 AGGGTTACGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCAATCCCCGGCTTGCGCATC
19742521 CCACCC
196 CCACCC
19742527 CTCTGGTCAG
Statistics
Matches: 189, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
208 189 1.00
ACGTcount: A:0.17, C:0.33, G:0.27, T:0.23
Consensus pattern (208 bp):
CCTACCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGCAGTGCCCACCCGCCACCCGCT
CGCTCGTTTTGTCAGTTGGCTTAGGCATAAGGAGTTCATTCCTACTCTAAGATCGAACCGGATCG
AGGGTTACGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCAATCCCCGGCTTGCGCATC
CCACCCTTCTAGG
Found at i:19742610 original size:26 final size:26
Alignment explanation
Indices: 19742574--19742626 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19742564 GTTGAATTAG
19742574 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19742600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19742626 G
1 G
19742627 ATCGGACAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19742734 original size:11 final size:11
Alignment explanation
Indices: 19742707--19742737 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
19742697 ATCGGGGCAC
*
19742707 CATCACCGGAG
1 CATCATCGGAG
19742718 CATCATCGGAG
1 CATCATCGGAG
19742729 CATCATCGG
1 CATCATCGG
19742738 GGAACCTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.16
Consensus pattern (11 bp):
CATCATCGGAG
Found at i:19744337 original size:26 final size:26
Alignment explanation
Indices: 19744307--19744359 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19744297 GTCGACTTAG
*
19744307 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19744333 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19744359 G
1 G
19744360 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19745236 original size:24 final size:25
Alignment explanation
Indices: 19745208--19745258 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19745198 GTTGACTTAG
*
19745208 GCATACG-GTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAATCTAA
19745232 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACG-AGTTCATTCCCAATCTAA
19745258 G
1 G
19745259 ATCGGAACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAATCTAA
Found at i:19745538 original size:901 final size:898
Alignment explanation
Indices: 19743416--19746497 Score: 4161
Period size: 901 Copynumber: 3.4 Consensus size: 898
19743406 GTTGACTTAG
* * * * *
19743416 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGGAACAGACCGAGGGTTACGACAGCACATGCTGGG
* * * *
19743481 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCAACACCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
*
19743546 ACCTGATCGACGGCATTGGGGTTCCGACGATTGGGAGGG-CCGAGGGGGTGTGCGTACATGATGT
131 ACCTGATCGACGGCATTGGGGTTCCGACGATCGGG-GGGTCCG-GGGGGTGT--G--C---A---
* *
19743610 GCGCACATGACGTGCGATGGGTGC-GAGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAA
184 ---CACATGATGTGCGATGGGTGCTG-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
19743674 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
245 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
19743739 TAAAGTATCTGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTT
310 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
19743804 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCTAAA
375 AGATGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
19743869 ACTCCTTTTGAAAAAATTTTAAAATATCCCAAACCGTAAAAGGTTTCGAAAGTCATGAAAAGTAG
439 ACTCC-TTTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
19743934 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
503 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
19743999 GCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
568 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
19744064 GATCCACGACTTGCGGATCCCGTCTCTCTGGCTGGCGTAGTGCCC-ACACGCCCGCCTGCCCGCT
633 GATCCACGGCTTGCGCATCCCGTCTCTCTGGC-GGCGTAGTGCCCGAC-CGCCCGCCTGCCCGCT
* ** * *
19744128 CATTTCGTAAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATCAGACC-AGACCGAA-
696 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACC-AAG
* * * * * * *
19744191 GGTTACGACAACAGGATCAGTAGCACACAGATGGGGACTCGATCGATACTCGGCTTGCGCATCCT
759 GGTTGCGACAACAGGATCGGTAGCACGCAGAAGGGGACCCGGTCGA-ACTCGGCTTGCGCATCCC
* * * *
19744256 GCCCCTCTGGCCTACTGAGCGCCCGCACACTCGTTTCATCGGTCGACTTAGGCATACGGAGTTCA
823 GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCA
*
19744321 TTCCCAGTTTAA
887 TTCCCAGTCTAA
* * * * * * *
19744333 GCATACGGAGTTCTTTCCCAGTCTAAGATC-AAACCGGACCGAAGGTTACGGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGGAA-CAGACCGAGGGTTACGACAGCACATGCTGG
* *
19744397 GCTCGGGCATGTGCTGGTGCCGTA-TTTTCTTCGTCGGGGCACCATCACCGTAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAG
** * * * * *
19744461 AACCTGGCCGGCGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTG
130 AACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGTCCGGGGGGTGTGCACACATGATGTG
*
19744526 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19744591 ACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19744656 GGGGACACATTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGATGAATTTTATTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTG
* * *
19744721 TGCAAGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
390 TGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TGAAAAA
* * *
19744786 AGTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
19744851 GCCATGAAACTTCACGTGAGGGCTTAATGGACCACTGTATGAATTTACAAGCCATAAAAAT-ACA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
19744915 TTGGCACGTAGAAATATGAAGATGCGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCA
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
19744980 CATCCTGTCTCTTTGGTCGGCGTAGTGCCCGTCTGCCCGCCTACCCACTCGTTTCGTCGGTTGGC
648 CATCCCGTCTCTCTGG-CGGCGTAGTGCCCGACCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGC
* ** * **
19745045 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGAACCAAGGGTTGCGATAGTAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGACAACAGGATC
* ** * *
19745110 GGTAGCACGCAGAAGGGGACCCGGTCGAACCTCGACTTATGCATCCCGCCCCTCTGGCCGGCTGG
777 GGTAGCACGCAGAAGGGGACCCGGTCGAA-CTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* * * *
19745175 GTGCCTGCATGCTTGTTTCATGGGTTGACTTAGGCATACG-GTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAA
*
19745232 GCATACGAAGTTCATTCCCAATCTAAGATCGGAACAGACCGAGGGTTACGACAGCACATGTTGGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGGAACAGACCGAGGGTTACGACAGCACATGCTGGG
* * * **
19745297 CTCGGGCATGTGCTGGTGTCGTATTTTTCTACGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* * *
19745362 ACCTGATCGACGGCATTAGGGTTCCGACGATCAGGGGGGTCAGGGGGGTGTGCACACATGTTGTG
131 ACCTGATCGACGGCATTGGGGTTCCGACGATC-GGGGGGTCCGGGGGGTGTGCACACATGATGTG
19745427 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19745492 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
19745557 GGGCACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCAAGTTTTAAGATAAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTG
* * *
19745622 TGCATGCCAGAAAAAATACAAGGATCACGTCTACTAAATTTGGGGCCAAAACTCCTTTTAAAAAA
390 TGCATGCCA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTGAAAAAA
* * * *
19745687 TTTTTAAAAAATCCCGAACCGTACAAAGTTTCAATAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 -TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
19745752 -TCATGATACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19745816 TTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
19745881 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGC
648 CATCCCGTCTCTCTGG-CGGCGTAGTGCCCGACCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGC
** * *** *
19745946 TTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAACAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGACAACAGGATC
** * * * * *
19746011 GACAGCATGCAGAGGGGGACCCGGTCGATTCTCGGCTTGCCCATACCGCCCCTCTGGCCGACTGA
777 GGTAGCACGCAGAAGGGGACCCGGTCGA-ACTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* * *
19746076 GCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT-ACGAGTTCATTCCCAGTCTAA
* * * * * * * *
19746135 GCATATGGAGTTCCTTCCCAGTCTATGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGGAACAGACCGAGGGTTACGACAGCACATGCTGGG
* * ** * ** * *
19746200 CTCGGGCAAGTGCTGGCGGTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
** * *
19746265 ACCTGATCGGTGGCATTGGGGTTCTGACGATCGGGGGGT-CGGAGAGGGTGTGCGCACATGATGT
131 ACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGTCCGG-G-GGGTGTGCACACATGATGT
** *
19746329 GCTTTGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19746394 CACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19746459 TGGGGACACTTTTTTCAAATGGTCAAAAAACCTTGTACA
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
19746498 NNNNNNNNNN
Statistics
Matches: 1911, Mismatches: 233, Indels: 56
0.87 0.11 0.03
Matches are distributed among these distances:
899 92 0.05
900 130 0.07
901 816 0.43
902 379 0.20
903 334 0.17
911 1 0.00
913 1 0.00
915 10 0.01
916 70 0.04
917 78 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCGGAACAGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
ACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGTCCGGGGGGTGTGCACACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGT
GCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTGAAAAAATT
TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCGGCGTAGTGCCCGACCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGACAACAGGATCGGTA
GCACGCAGAAGGGGACCCGGTCGAACTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAA
Found at i:19746145 original size:26 final size:26
Alignment explanation
Indices: 19746109--19746159 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19746099 GTTGACTTAG
19746109 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
* *
19746135 GCATATGGAGTTCCTTCCCAGTCTA
1 GCATAAGGAGTTCATTCCCAGTCTA
19746160 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:19747689 original size:26 final size:26
Alignment explanation
Indices: 19747652--19747704 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19747642 GTTGACTTAG
19747652 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19747678 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
19747704 G
1 G
19747705 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19748158 original size:26 final size:26
Alignment explanation
Indices: 19748122--19748174 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19748112 GTTGACTTAG
19748122 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19748148 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19748174 G
1 G
19748175 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19748481 original size:470 final size:470
Alignment explanation
Indices: 19747601--19748508 Score: 1349
Period size: 470 Copynumber: 1.9 Consensus size: 470
19747591 TATGCATCTC
*
19747601 GCCCCTCTGGCCGGCTGAGCGCCCAGATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
1 GCCCCTCTGGCCGGCTGAGCGCCCAGACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
19747666 TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGTTGCAGCAG
66 TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGTTGCAGCAG
* * * *
19747731 CACATACTGGGCTTGGGCATATGCTGGCACCATATTTTTCTTTGTCGGGGCACCATCGTCGGAGC
131 CACATACTGGGCTCGAGCATATGCTGGCACCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
* * *
19747796 ATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGTCAGGGGGAGGTGTG
196 ATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGACAGGGGGAGCTGTG
* * * * *
19747861 CGCACATGATGTGCAATGGGTGCTGGTACTTGGCATTTCTATTGGCCCCTTATCCCTCATCAAAC
261 CGCACATAATGTGCAATGAGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAAC
* *
19747926 CTCAAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCAATTA
326 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTA
19747991 AAGTGTCTCAAATGGGGACACTTTTTTC-AAATGATCACAAAATCTTGTGCATGCCAACAAAAAT
391 AAGTGTCTCAAATGGGGACACTTTTTTCAAAATGATCAC-AAATCTTGTGCATGCCAACAAAAAT
19748055 ACAAGGATCACATCCT
455 ACAAGGATCACATCCT
*
19748071 GCCCCTCTGGCCGGCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 GCCCCTCTGGCCGGCTGAGCGCCCAG-ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
* * * *
19748135 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGC
65 ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-GGTTGCAGC
* * * * ** **
19748200 AGCACATGCTGGGCTCGATCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
129 AGCACATACTGGGCTCGAGCATATGCTGGCACCACATTTTTCTTCGTCGGGGCACCATCGTCGGA
* ** ** * *
19748265 GCATCAGTCGGAGAACCTGAGTGGCGGTATTGGGGTTTCGGCGATC-GGGGGGACCGGGGG-GCT
194 GCATCA-CCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGACAGGGGGAGCT
* * *
19748328 GTTCGCACATAATGTGCGATGAGTGCTGGTA-TGTGGCCCTTATATTGGCCCCCTATCCCTCATC
258 GTGCGCACATAATGTGCAATGAGTGCTGGTACT-TGGCACTTATATTGGCCCCCTATCCCTCATC
* * *
19748392 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCC
322 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCA
* *
19748457 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAATGGTCACAAATCTTGT
387 ATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAAATGATCACAAATCTTGT
19748509 ACACTTTCTG
Statistics
Matches: 390, Mismatches: 43, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
469 2 0.01
470 268 0.69
471 88 0.23
472 32 0.08
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (470 bp):
GCCCCTCTGGCCGGCTGAGCGCCCAGACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGTTGCAGCAG
CACATACTGGGCTCGAGCATATGCTGGCACCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
ATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGACAGGGGGAGCTGTG
CGCACATAATGTGCAATGAGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAAC
CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTA
AAGTGTCTCAAATGGGGACACTTTTTTCAAAATGATCACAAATCTTGTGCATGCCAACAAAAATA
CAAGGATCACATCCT
Found at i:19749079 original size:26 final size:26
Alignment explanation
Indices: 19749043--19749095 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19749033 GTTGAATTAG
19749043 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19749069 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19749095 G
1 G
19749096 ATTGGACTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19752143 original size:26 final size:26
Alignment explanation
Indices: 19752107--19752159 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19752097 GTTGACTTAG
19752107 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19752133 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19752159 G
1 G
19752160 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19752747 original size:895 final size:890
Alignment explanation
Indices: 19749521--19754253 Score: 5918
Period size: 896 Copynumber: 5.3 Consensus size: 890
19749511 ATCAAGTTCA
* * * * *
19749521 GGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGAACCTGACTGGCGACA
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCA
* * ** * **
19749586 TTGCGGTTTCGGTGATCGGGGGTGTCGGGGTGGTGTGCGCACATGATGTGCGATGGGTTATGGTA
66 TTGGGGTTCCGACGATCGGGGG-GCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
19749651 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
129 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* * *
19749716 ATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACATTTTTC
194 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
19749781 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
259 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
19749846 ATACAAGGATCA---C-A-TAAGTTTGGGACTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCC
324 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* **
19749906 GAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
389 GAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
19749971 GTGAAGGCTTAAGGGACCATTGTATTAACTTACAAGCCATAAAAATGGCATTGGCATATAGAAAT
454 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
*
19750036 ATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
519 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
19750101 GCCGGCGTAGTGCCTG-CCCGCCCGCCCTCCCACTT-GTTTCTTCAGTTGGCTTAGGCATACGGA
584 GCCGACGTAGTGCCTGCCCCACCCG-CC-CGCA-TTCGTTTCGTCAGTTGGCTTAGGCATACGAA
** ** * *
19750164 GTTCATTCAAAGTCTAAGATTGGACCGGACTAAGGGTTATGGCAGTAGGATCGGCAGCACA-CAG
646 GTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGCAGCAGGATCGGCAGCA-AGCAG
* * *
19750228 AGGGGGGCCCGACCGATCCCTGGCTTGCGCATCCCG-CTCCTCTGGCCGGCTCAGCGCCCGCACA
710 AGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGAC-CCTCTGGCCGGCTGAGCGCCCGCACG
* * * * * * * * *
19750292 TTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCAATCCCGGTCTAACCACAAGGAGTTCATTC
774 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
19750357 CCTGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCG
839 CCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
** * * * **
19750409 GGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGCCACCATCGCCGGAGAACCTTACCGACGAAA
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCA
** *
19750474 TTGGGGTT-ATAGCGATCAAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
66 TTGGGGTTCCGA-CGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
19750538 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAGGAG
128 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
* *
19750603 CATTTAAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
193 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
19750668 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGAGCATGCCAAAAAA
258 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
19750733 AATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTCAAAAATCC
323 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
19750798 CGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCA
388 CGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * **
19750863 CGTGAAGGTTTAAGGGATCGTTGTATGAATTTACAATCCATAAAAATGGCATTGGCACATAGAAA
453 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
* * * * *
19750928 TATGAATATGTGCCTAAACCCACCGACTACTCTATCGATCCACGGGTTGCGCATCCCGTCTCTCT
518 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
*
19750993 GGCCGACGTA--G--TG-CCCACCCGCCCG--TTCGTTTCGTCGGTTGGCTTAGGCATACTG-AG
583 GGCCGACGTAGTGCCTGCCCCACCCGCCCGCATTCGTTTCGTCAGTTGGCTTAGGCATAC-GAAG
* * * * *
19751050 TTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAG
647 TTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGCAGCAGGATCGGCAGCAAGCAGAG
* * * * * * *
19751115 GGGGACCTGACCGATCCCTGGCTTGCGCATCCCAACCCTATGGCCGGTTGAGGGCCCGCTCTCTC
712 GGGGACCCGACCGATCCCTGGCTTGCGCATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
19751180 ATTTCGTGGGTTGACTTAGGCTTACAGAGTTCATTCCCAGTCTAAAG-ATACGGAGTTCATTCCC
777 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT-AAGCATACGGAGTTCATTCCC
* ** * * *
19751244 AGTCTAAGAT-TAGACCAGATCGAGGGTTGCGACAGCACATGCTGGGCTCG
841 AGTCTAAGATCGA-ACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* *
19751294 GGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAATCATCGGAGAACCT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAA-C--C--TG-ACC-
* * *
19751359 GACCGATAGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGGGCACATGATGTACGATG
59 GA-CG---GCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
**
19751424 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTCAAACCTTGAGAACTCACACCC
119 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCAAGAACTCACACCC
* *
19751489 CCTTAAAAAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
183 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
19751554 ACACTTTCTTCAAATGGTGACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCA
248 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
19751619 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCCTTTCGAAAAAATTT
313 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
19751684 AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCA
378 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
19751749 TGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
443 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
19751814 CACGTAGAAATATGAAGATGTGCCT-AACTCCTCCTACCACCCTATCGATCCACGGCTTGCGCAT
508 CATGTAGAAATATGAAGATGTGCCTAAAC-CCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
19751878 TCTGTCTCTCTGGCCGACATAGTGCCTGCCCGCCCGCTCGCCCGCCCATTCGTTTCATCA-TGTG
572 CCCGTCTCTCTGGCCGACGTAGTGCCTGCCC-CAC-C-CGCCCG--CATTCGTTTCGTCAGT-TG
* * * * * **
19751942 GCTTAGGCTTACGAACTTTATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGATAGCAGGA
631 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGCAGCAGGA
* ** * * **
19752007 TCGGCAGCAAGCAGAGGGGGACCCGATCGATCGTTGGCTTACGCATCCCGACCTTCTGGATGGCT
696 TCGGCAGCAAGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGACCCTCTGGCCGGCT
* * *
19752072 GAGTGCCCGTACGCTCTTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
761 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
** * * *
19752137 ACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTAAGGCTTTCGGCAGCACATGCTGGCCTCG
826 ACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * *
19752202 GGCATGTGCTGGTGCCACAGTTTTCTTCGTCGGGGCACCATCGTCGAAGAACCTGACCGACGGCA
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCA
* * *
19752267 TT-GGGTTCCGACGATTGAGGGGGCCGGGTGGGAGTGTGCACATGATGTGCGATGGGTGCTGGTA
66 TTGGGGTTCCGACGATCG-GGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
19752331 CTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTGACACCCCCTTAAAGAGC
129 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* * * *
19752396 ATTTGAGATTTTACAGGTTTGTTACCAGTAGCCTTTAATGTGTCTGAAATGGGGACAC-TTTTTC
194 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
19752460 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAA
259 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
** * *
19752525 ATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATCTC
324 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
19752590 AAACCGTAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCAC
389 GAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* ** * *
19752655 GTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGTTATGGGCATGCAGAAAT
454 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
* *
19752720 ACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT-TA
519 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-
* * * * *
19752784 GGCC-AGTGTAGTGCCCGCCAACCTGCTCGCCCG-A-TCGTTTCGTCAGTTGGCATAGGCATACG
583 GGCCGA-CGTAGTGCCTGCC--CC-ACCCGCCCGCATTCGTTTCGTCAGTTGGCTTAGGCATACG
* * * * *
19752846 AAGTTCATTCCCAGTCTAAGATCAGATCAGAC-AAGGATTATGGTAGCAGGATCGGCAGCACA-C
644 AAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGCAGCAGGATCGGCAGCA-AGC
* * * * * * *
19752909 AGAAGGGGACCCGACTGATCCCTGGCCTACGCATCCCG-CACCTCTGGTCGACTGAGCGCCTGCA
708 AGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGAC-CCTCTGGCCGGCTGAGCGCCCGCA
* * * *
19752973 CGCTCTTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAATCTAAGCATACGGAGTTCTT
772 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
*
19753038 TCCCAATCTAAGATCGGAA-TGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
837 TCCCAGTCTAAGATC-GAACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* **
19753092 GGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--T---CGGAGAACCT
* * * *
19753157 GACCGACGGCATTAGGGTTCCGATGATCGGAGGGGCCGGGGGGTCTACGCACATGATGTGCGATG
55 GACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
19753222 GGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCCCATAAAACCTCAAGAACTCACACCCC
119 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* * * *
19753287 CTTAAAGATCATTTGAAATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGA
184 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
19753352 CACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
249 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
19753417 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCAAAAAAATTTT
314 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
19753482 AAAATATCCCAAACCGTAAAAAGATTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
379 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
19753547 GCAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
444 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
19753612 ATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
509 ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
19753677 CATCTCTCTGGCCGGCGTA--G--TG-CCCACCCGCCCGCA-T-GTTTCGTTAGTTTGCTTAGGC
574 CGTCTCTCTGGCCGACGTAGTGCCTGCCCCACCCGCCCGCATTCGTTTCGTCAGTTGGCTTAGGC
* * * * *
19753735 ATACGGAGTTCATTCTCAGTCTAAGATTAGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGC
639 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGCAGCAGGATCGGCAGC
* * * * * **
19753800 ATGCAGAGGGGGACCCGATCGAT-CCTCGGCTTGTGCAT-CCTACCCCTCTGGCCGACTGAGCAT
704 AAGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGA-CCCTCTGGCCGGCTGAGCGC
* * * * *
19753863 CTGCGCGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG
767 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
* *
19753924 ---------A--C------CGAACT-G---G-GGGTTAGGGTAGCACATGCTGGGCTC-
832 TTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* *
19753960 GGCTATGTGCTGGTGCCGTATTTTTCTTC-ACTGGGGCACCATCGCCGAAGCATCGTCGGAGAAC
1 GGC-ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGG---CA----C----CATCGTCGGAGAAC
** * *
19754024 CTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGG-TGGGGGGTGTACGCACATGATGTGCGAT
53 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * * *
19754087 GGGTGCTGGTGCTTGGCCCTTATAGTGGCCCCCTATCCTTCATCAAACCTCGAGAACCCACACCC
118 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
19754152 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
183 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
19754217 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
248 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
19754254 TTAGCAAGTT
Statistics
Matches: 3380, Mismatches: 373, Indels: 206
0.85 0.09 0.05
Matches are distributed among these distances:
866 180 0.05
867 4 0.00
868 5 0.00
869 87 0.03
870 1 0.00
872 3 0.00
873 4 0.00
874 3 0.00
876 1 0.00
877 1 0.00
880 4 0.00
882 1 0.00
884 2 0.00
885 272 0.08
886 5 0.00
887 1 0.00
888 303 0.09
889 18 0.01
890 215 0.06
891 62 0.02
892 5 0.00
893 230 0.07
894 67 0.02
895 504 0.15
896 523 0.15
897 71 0.02
898 3 0.00
900 5 0.00
901 167 0.05
902 338 0.10
903 3 0.00
904 6 0.00
905 1 0.00
907 6 0.00
908 278 0.08
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
ACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGACGTAGTGCCTGCCCCACCCGCCCGCATTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCA
TTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGTGGCAGCAGGATCGGCAGCAAGCAGAGGGGG
ACCCGACCGATCCCTGGCTTGCGCATCCCGACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGAACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
Found at i:19753033 original size:26 final size:26
Alignment explanation
Indices: 19752997--19753049 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19752987 GTTGACTTAG
19752997 GCATACAGAGTT-TATTCCCAATCTAA
1 GCATACAGAGTTCT-TTCCCAATCTAA
*
19753023 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACAGAGTTCTTTCCCAATCTAA
19753049 G
1 G
19753050 ATCGGAATGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCTTTCCCAATCTAA
Found at i:19755902 original size:26 final size:26
Alignment explanation
Indices: 19755865--19755917 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19755855 GTTGACTTAG
* *
19755865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
19755891 GCATACGAAGTTCATTCTCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
19755917 G
1 G
19755918 ATAGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:19756524 original size:892 final size:885
Alignment explanation
Indices: 19754377--19757684 Score: 3732
Period size: 863 Copynumber: 3.7 Consensus size: 885
19754367 TCGTGGGTTA
* *
19754377 AGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
1 AGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
19754442 GTCACAAAACCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAC
66 GTCACAAAATCTTGTACACTTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
**
19754506 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAA-TTAAAAAAATCCTGAAC
130 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAAC
* * * *
19754570 CGTAAAAAGTTTCAAAAGA-CGTGAAAAATAGAAAACGAGTCATCTTACCATGAAACTTCACGTG
195 CGCAAAAAGTTTCAAAA-ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* ** *
19754634 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGC-AGAATATG
259 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATG
* * *
19754698 AAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTAGCT
324 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCC
* * * * * * * *
19754763 GACGTAGTGCCTGCCCGTCCGCCCGCTCGTTTCATCGGTCGGCATAGGCATACGAAGTTCATTCC
389 GACGTA--G--TGCCCGCCCGCCCGTTCTTTTCAT-AGTTGGCTTAGGCATAAGGAGTTCATTCC
* * * * *
19754828 CAGTCTAAGATTGGACTGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCC
449 CAATCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGAAGGGGACCC
* ** * * * * *
19754893 GGCCGATCCCCGGCTTGTGCATCACGCCCCTCTGGCCGGCTGAGAGCTCGCACACTCGTTTTGTG
514 GACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * * *
19754958 GGTTGACTTAGGCATACGGAGTTCATTTCTAGTTTAAGCATACGGAGTTCATTCCCAGTATCAGA
579 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
* * *
19755023 TCGGATCGGACGAAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTAGTGCCGTATTTTT
644 TCGGAT-GGACG-AGGGTTGCGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * *
19755088 CTTCACCGGGGAACCATCG-TCGGAGCATCGCCGGAGAACATGACCTGCGGCATTGTGGTTCCGA
706 CTTCACC-GGGCACCATCGCT-GGAGCA--ACC--AGAAC-CGA-C--CGACATTGGGGTT-CGA
* * ** * *
19755152 CGATC-GG--GGGGGCCAGGGGGGTGTGCGGACATGATGCACAATGGGTGCTGGTAGTTGGCCTT
760 CGATCAGGTCGGGGGCGAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
* *
19755214 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTG
825 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTT
* * * *
19755275 AGATTTTATAGGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
1 AGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * *
19755340 GTCACAAAATCTTGTACACTTCCAGTTTTCAGTTGAATTGTTTTTGTGCATGCCAACAAAAATGC
66 GTCACAAAATCTTGTACACTTTCAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAAAAAAAATAC
*** * * *
19755405 AAGGATCACGTCTACTGTGTTTGGGACCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCTGAAC
130 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAAC
* * *
19755470 CGTAAAAAGTTTCAAAAAGCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
195 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
19755535 AGGCTTAAGGAACCATTGTATGAATTTACAACCCATAAAAATTGCATTGGCACACAGAAATATGA
260 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGA
* * *
19755600 AGATGCGCCTAAGCCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCTCGTCTCTCTAGCCG
325 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCG
* * * ** *
19755664 ACATAGTGCCCGCCCGCCCGTTCTTTTCATATTTTGGCTTAGGCATAAAGAGTTCATTCAAAATA
390 ACGTAGTGCCCGCCCGCCCGTTCTTTTCATA-GTTGGCTTAGGCATAAGGAGTTCATTCCCAATC
* ** * * *
19755729 TAAGGTCAAACCGGACTGAGGGTTGCGGCAGCAGGATTAACAGCACGCAGAGGGGGACCCGACTG
454 TAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGAAGGGGACCCGACCG
* ** * * *
19755794 ATCCCCGGCTTGCATATCCCGCCCCTTTGGCTGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTG
519 ATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * *
19755859 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCAATCTAAGATAGGA
584 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGA
* * * *
19755924 CTAGACCGAGGGTTGCGGCAGCACCTGCTAGATCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
649 -TGGA-CGAGGGTTGCGGCAGCACATGCTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
*
19755989 CGTGGCACCATCGCTGGAG-AACC-GAACCGA-CGACATTGGGGTTCTGATGATCGAGGGGGTCG
712 CG-GGCACCATCGCTGGAGCAACCAGAACCGACCGACATTGGGGTTC-GACGATC-A---GGTCG
*
19756051 GGGGTCGGGGGGCGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
771 GGGG-CGAGGGG-GGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
19756116 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTT
834 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTT
19756168 AGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
1 AGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
19756233 GTCACAAAATCTTGTACACTTTCAATTTTTAGCTGAGTTTTTTTGTGCATGCCAAAAAAAATACA
66 GTCACAAAATCTTGTACACTTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
*
19756298 AGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAAT-CTCGAAC
131 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCT-GAAC
* ** *
19756362 TGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGA
195 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
19756427 AGGCTTAAGGGACCATTTTATGAATTTAGAAGCCATAAAAATGGCATAGGCATACAAAAATATGA
260 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGA
* * * * *
19756492 AGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTCCGCATCCAGTTTTTCTAGCCG
325 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCG
*** * * * * *
19756557 ACGTAGTGCCCGCCCTTTCGTT-TTGTC-GA-TTGGGTTTGGCATACGGAGTTCATTCCCAATCT
390 ACGTAGTGCCCGCCCGCCCGTTCTTTTCATAGTTGGCTTAGGCATAAGGAGTTCATTCCCAATCT
* * * * * *** * * ** *
19756619 AAGATTGGGCGGGA-TCGAGGGTTGCAGCAGTAGGATCGGTATCATGCAGAAGGGGATGCGATCG
455 AAGATCGGACCGGACT-GAGGGTTGCGGCAGCAGGATCAACAGCACGCAGAAGGGGACCCGACCG
* * * * * * *
19756683 ATCCTCGGGTTACGCATCCCGCCCCTCTGACTGGCTGAGCGCCCGCACGCTCGTTCCGCGGGTTA
519 ATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
19756748 ACTTAGGCATACGGAGTTCGTTCCCAGTCTAAG-AT-C--AG---A----C---C---G---GG-
584 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGA
* * * * **
19756792 T---CGAGGGTTGCAGTAGCACATGCTGGCCTCGGGCTTGTGTTGGTGCCGCATTTTTCTTCGTC
649 TGGACGAGGGTTGCGGCAGCACATGCTGG-CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* * *
19756854 GGTGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGGCGACATTGGGGTTC--CGA-CA-AT
713 GG-GCACCATCGCTGGAGCAAC--C--AGAACC-GA-C--CGACATTGGGGTTCGACGATCAGGT
* * *
19756915 CGGGGG-GTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
769 CGGGGGCGAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
19756979 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC-TTTT
834 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTT
* *
19757030 GAGATTTTACAAGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACTCTTTTTTCAAAT
1 -AGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
19757095 GCTCACAAAATCTTGTATACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAATAATAC
65 GGTCACAAAATCTTGTACACTTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * ** *
19757160 AAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCATCTGAAAAAATTTTTAAAAATACC-GAG
130 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAAT-CCTGAA
* * * * * *
19757223 CCTCAAAAAGTTTCAAAAATCGTAAAAAATAGAAGACAAGTCGTCTTGCCATGAAACTTCATGTG
194 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * ** *
19757288 AAGGCTTAAAGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGTAGAAATATG
259 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATG
* * ** * *
19757353 AAGATGTGCCTCAACCCACCTACCACCCTATCAATCCACGGCAAGCGCATCCCGTCCCTCTGGCC
324 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCC
* * *
19757418 TG-CGTAGTGCCCGCCCGCCCGCTTGCCCGCTTGTTTCCTCGATTGGCTTAGGCATACGGAGTTC
389 -GACGTAGTGCCCGCCCGCCCG-TT-----C-T-TTTCATAG-TTGGCTTAGGCATAAGGAGTTC
* * * * * * * * *
19757482 ATTCCGAGTCTAAGATCGGATCGGACCGATGGTTGTGGTAGCAGGATCGACAGCATGCA-AAGGG
444 ATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGAAGGG
* * * * *
19757546 GACTCGACCGATCCCCGACTTACGCATCCCACCCCTCTGGCCGGCTAAGCACCCGCACGCTCGAT
509 GACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-T
* * * ** *
19757611 TT-GTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTATCAGCATGTGGAGTTCATTCCCGAT
573 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAAT
19757675 CTAAGATCGG
638 CTAAGATCGG
19757685 GCCGGACCGA
Statistics
Matches: 2045, Mismatches: 291, Indels: 153
0.82 0.12 0.06
Matches are distributed among these distances:
862 208 0.10
863 273 0.13
864 51 0.02
865 2 0.00
866 7 0.00
867 2 0.00
869 2 0.00
870 7 0.00
871 6 0.00
872 3 0.00
873 92 0.04
874 67 0.03
875 15 0.01
877 2 0.00
878 1 0.00
880 1 0.00
882 1 0.00
883 1 0.00
884 18 0.01
885 2 0.00
887 2 0.00
888 5 0.00
889 161 0.08
890 1 0.00
891 8 0.00
892 239 0.12
893 233 0.11
894 2 0.00
895 45 0.02
896 233 0.11
897 3 0.00
898 93 0.05
899 66 0.03
900 151 0.07
901 42 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
AGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACC
GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGA
CGTAGTGCCCGCCCGCCCGTTCTTTTCATAGTTGGCTTAGGCATAAGGAGTTCATTCCCAATCTA
AGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGAAGGGGACCCGACCGAT
CCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATG
GACGAGGGTTGCGGCAGCACATGCTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
CACCATCGCTGGAGCAACCAGAACCGACCGACATTGGGGTTCGACGATCAGGTCGGGGGCGAGGG
GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTT
Found at i:19759337 original size:26 final size:26
Alignment explanation
Indices: 19759300--19759352 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19759290 GTTGACTTAG
*
19759300 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19759326 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
19759352 G
1 G
19759353 ATAGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19760205 original size:889 final size:895
Alignment explanation
Indices: 19757803--19760311 Score: 3059
Period size: 889 Copynumber: 2.8 Consensus size: 895
19757793 GATTCGTGGG
* *
19757803 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAA
1 TTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAA
* * *
19757868 ATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAAT
65 ATGGTCACAAAATCTTGTACACTTC-AATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
*
19757933 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTAAAAAATCTCGAA
129 ACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTAAAAAATCTCGAA
* * *
19757998 CCGTAAAAAGTTTCAAAAGTCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTG
192 CCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
19758063 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAG-AATATG
257 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* *
19758127 AAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCC
322 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
19758192 GACGTAGTGCCTGCCCACCCGCCCGCTCGTTTCATCGGTTGGCATAGGCATAC-GAAGTTCATTC
387 GACGTAGTGCCCGCCCGCCC-CCCGCTCATTTCATCGGTTGGCTTAGGCATACAG-AGTTCATTC
* * * *
19758256 CCAGTCTAAGAT-TGGACTGGACTAAGGGTTACGGCAGCAGGATCAGCAGCACGCAGAGGGGGAC
450 CCAATCTAAGATCT-GACCGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGAC
* * * * *
19758320 CCGACCGATCCCCGGCTTGT-GCATCACGCCCCTCTGGCCGGCTGAGAGCCCGCACCCTCGTTTT
514 CCGACCGATCCCCGGCTT-TCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTC
* * *
19758384 GTGGGTTGACTTAGGCATACGGAGTTCATTTCTAGTCTAAGCATACGGAGTTCATTCCCAGTATC
578 GTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* ** * *
19758449 AGATCGGACCGGA-CGAAGGGTTGCGGCAGCACATGCTGGGCCTGGGCATGTGCTAGTGCCGTAT
643 AGATAGGACCGGACCG-AGGGTTGCGGCAGCACATGCTGGATC-GGGCATGTGCTGGTGCCGCAT
* * * *
19758513 TTTTCTTCATCGAGGAACCATCATCGGAGCAATCGTCGGGAACATGACCTGCGGCATTGTGGTTC
706 TTTTCTTCACCGAGGAACCATCATCGGAGCAATCG-C-GGAACACGA-C--CGACATTGGGGTTC
* * * *
19758578 CGATCGGCGGAGGCCGGGGGGGGTGTGCGGACAGAATGCAGCGATGGGTGGCTGGGTAGTGTGCG
766 CGATCGGCGGAGGCCGGGGGGAGTGTGCGCACAGAATGCAGCAATGGGTGGCTGGCTAGTGTGCG
* *
19758643 CTTTATAATCTGGCCCCCTGAATCCCTCATCGAAACCTCGCAGAAGTCACCCCCTTAAAGACCAT
831 CCTTATAATCTGGCCCCCT-AATCCCTCATCGAAACCTCGCAGAACTCACCCCCTTAAAGACCAT
19758708 C
895 C
* * *
19758709 TTGAGATTTAATAGGTTTGCTACCAATAGCCATTAAAGTGTCCTGAAATGGGGACACTTCTTTTT
1 TTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT-CTGAAATGGGGACA---CTTTTT
** * * *
19758774 C-AATGGTCCACAAAATCTTGTACACATTTGA-GTTTCGTTGAAATTATTTTTGTGCATGCCAAC
62 CAAATGGT-CACAAAATCTTGTACAC-TTCAATTTTTAGCTG-AATT-TTTTTGTGCATGCCAAC
* ** * **
19758837 AAAAAT-GAAGGATCACGTCTACTGTGTTTTGGGACCAAAACTCCTTCCG-AAAAATTT-TTAAA
123 AAAAATACAAGGATCACGTCTAC-AAG-TTTGGGGCCAAAACTCCTT-CGAAAAAATTTAAAAAA
** * * * *
19758899 TC-CTGAACCGTAAAAAGTTCCAAAAAGCATGAAAAA-ATAAAATGAGTCGTCTTG-CATGAAAC
185 TCTC-GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
* *
19758961 TTCACGTGAAGGCTTAAGGCAACCATTGT-T-AATTTACAAGCCATAAAAATGGCATTGGCACAC
249 TTCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
** *
19759024 AGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
313 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * ** *
19759089 TCTCTGGCCGACATAGTGCCCGCCCG---CCCGTTCTTTTCATCTTTTGGCTTAGGCATAAAGAG
378 TCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAG
** * ** *
19759151 TTCATTCAAAATCTAAGGTCAAACCGGACTGAGGGTTGCGGCAGTAGGATCAGCAGCACGCAGAG
443 TTCATTCCCAATCTAAGATCTGACCGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAG
* * * * *
19759216 GGGGACCCGACTGATCCCCGGCTTGCGTATCCCGCCCTTCTGGCCGGCTGAGCGCCCACACGCTT
508 GGGGACCCGACCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTC
* * *
19759281 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
573 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
* ** *
19759346 ATCTAAGATAGGACTAGACCGAGGGTTGCGGCAGCACCTGCTGGATCGGGCATGTGCTGGTGCCG
638 GTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGATCGGGCATGTGCTGGTGCCG
* * *
19759411 CATTTTTCTTCACCGGGGTACCATC-GCTGGAG-AA-C-C-GAAC-CGA-CGACATTGGGGTTCT
703 CATTTTTCTTCACCGAGGAACCATCATC-GGAGCAATCGCGGAACACGACCGACATTGGGGTTC-
* * * * *
19759469 GATGATCGG-GGGGGTCGGGGGGCAGTGTGCGCACATG-ATG-TGCAATGGGT-GCT-GCTACT-
766 --CGATCGGCGGAGGCCGGGGGG-AGTGTGCGCACA-GAATGCAGCAATGGGTGGCTGGCTAGTG
*
19759528 TG-GCCCTTA-CAT-TGGCCCCCT-ATCCCTCATC-AAACCTCG-AGAACTCACACCCCCTTAAA
827 TGCG-CCTTATAATCTGGCCCCCTAATCCCTCATCGAAACCTCGCAGAACT--CACCCCCTTAAA
*
19759587 GAGCAT-
889 GACCATC
* *
19759593 TTTAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAA
1 TTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAA
19759658 TGGTCAC-AAATCTTGTACACTTCAATTTTTAGCT-AAGTTTTTTTGTGCATGCCAA-AAAAATA
66 TGGTCACAAAATCTTGTACACTTCAATTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATA
* *
19759720 CAAGGATCACGTCCACAAGTTTGGGGCCAAACAAT-CTTCGAAAAAATTTAAAAAAATCTCGAAC
130 CAAGGATCACGTCTACAAGTTTGGGGCCAAA-ACTCCTTCGAAAAAATTT-AAAAAATCTCGAAC
* * * * * *
19759784 TGGCAAGAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
193 -CGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
19759849 AAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGAATTGGCACGCAGAAATATG
257 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
19759914 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
322 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
19759979 GGCGTAGTACCCGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTAA
387 GACGTAGT----GCCCGCCCGCCC-CCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCA
* * * * * * **
19760044 TTCCCAATCTAAGATCTGACCGGACCGAGGGTTGCGGTAGCAAGATCGGTAGCACACAGAGTTGG
447 TTCCCAATCTAAGATCTGACCGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGG
* * * * *
19760109 ACCCTACCGATCCCAGACTTTCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCACACGCTCATTT
512 ACCCGACCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTT
* *
19760174 CGTGGGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCT
577 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
19760239 AAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGCGCATGTGCTGGTGCCGCAT
642 AAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCT-GGATCGGGCATGTGCTGGTGCCGCAT
*
19760304 TTCTCTTC
706 TTTTCTTC
19760312 GTCGGGTCAC
Statistics
Matches: 1371, Mismatches: 182, Indels: 116
0.82 0.11 0.07
Matches are distributed among these distances:
874 2 0.00
875 22 0.02
876 9 0.01
877 41 0.03
878 26 0.02
879 42 0.03
880 37 0.03
881 113 0.08
883 19 0.01
884 44 0.03
885 36 0.03
887 9 0.01
888 3 0.00
889 238 0.17
890 47 0.03
891 3 0.00
892 19 0.01
893 19 0.01
894 3 0.00
895 4 0.00
897 1 0.00
899 1 0.00
900 3 0.00
901 42 0.03
902 232 0.17
903 3 0.00
905 32 0.02
906 144 0.11
907 38 0.03
908 46 0.03
909 51 0.04
910 42 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
TTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTAAAAAATCTCGAACCGT
AAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
TAGTGCCCGCCCGCCCCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATC
TAAGATCTGACCGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCG
ATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGA
CCGGACCGAGGGTTGCGGCAGCACATGCTGGATCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
CGAGGAACCATCATCGGAGCAATCGCGGAACACGACCGACATTGGGGTTCCGATCGGCGGAGGCC
GGGGGGAGTGTGCGCACAGAATGCAGCAATGGGTGGCTGGCTAGTGTGCGCCTTATAATCTGGCC
CCCTAATCCCTCATCGAAACCTCGCAGAACTCACCCCCTTAAAGACCATC
Found at i:19760225 original size:26 final size:26
Alignment explanation
Indices: 19760189--19760241 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19760179 GTTGACATAG
19760189 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19760215 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
19760241 G
1 G
19760242 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:19761668 original size:26 final size:26
Alignment explanation
Indices: 19761632--19761682 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19761622 TGACTTAGGC
*
19761632 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
19761658 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19761683 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:19763474 original size:26 final size:26
Alignment explanation
Indices: 19763438--19763490 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19763428 GTTGACATAG
*
19763438 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19763464 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19763490 G
1 G
19763491 ATCAAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19763628 original size:316 final size:316
Alignment explanation
Indices: 19763050--19763638 Score: 869
Period size: 316 Copynumber: 1.9 Consensus size: 316
19763040 GCACCTGGTT
* * * *
19763050 GATCCCCGGCTTATGCATCCCGCCCCTCTGGCTGGCTGAGTGCCTGCACGCTCATTTCGTGGGTT
1 GATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
* * **
19763115 GACTTACGCAAACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGC
66 GACATACGCAAACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAA
*
19763180 ACTAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCACATTTCTTC
131 ACTAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCACATTTCTTC
* * * * * *
19763245 CCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACTTGACCAGCGGTATTGGGGTTCCGACGATC
196 CCCAGGGCACCATCACCGGAGAATCGTCGGAGAACCTAACCAGCAGCATTGGGGTTCCGACGATC
19763310 GGGGGGGCCGGGGGTTATGGTAGTAAGATCAGCAGCACACAGAGGGGGACCCGGCC
261 GGGGGGGCCGGGGGTTATGGTAGTAAGATCAGCAGCACACAGAGGGGGACCCGGCC
* *
19763366 GATCCCCGGCTT-TCGCATCCTGCCCCTCTGGCCGATTGAGCGCCCGCACGCTCATTTCGTGGGT
1 GATCCCCGGCTTAT-GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGT
* * *
19763430 TGACATAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
65 TGACATACGCAAACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * **
19763495 AACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGT-CGTGCATTTTTCT
130 AACTAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGC-CGCACATTTCT
** * *
19763559 TCGTCAGGGCACCATCACCGGAGAATCGTTGGAGAACCTAACC-GACAGCATTGGGGTTCCGATG
194 TCCCCAGGGCACCATCACCGGAGAATCGTCGGAGAACCTAACCAG-CAGCATTGGGGTTCCGACG
*
19763623 ATCGGGGGGGTCGGGG
258 ATCGGGGGGGCCGGGG
19763639 TGTGTGCGCA
Statistics
Matches: 241, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
315 3 0.01
316 238 0.99
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (316 bp):
GATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
GACATACGCAAACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAA
ACTAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCACATTTCTTC
CCCAGGGCACCATCACCGGAGAATCGTCGGAGAACCTAACCAGCAGCATTGGGGTTCCGACGATC
GGGGGGGCCGGGGGTTATGGTAGTAAGATCAGCAGCACACAGAGGGGGACCCGGCC
Found at i:19764377 original size:26 final size:26
Alignment explanation
Indices: 19764341--19764393 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19764331 GTTGACTTAC
*
19764341 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19764367 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19764393 G
1 G
19764394 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19767733 original size:877 final size:876
Alignment explanation
Indices: 19763464--19770280 Score: 7965
Period size: 877 Copynumber: 7.8 Consensus size: 876
19763454 CCTAGTCTAA
** * * *
19763464 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
** ** * ** * *
19763529 CTC-AGGCATGTGCTGGT-CGTGCATTTTTCTTCGTCAGGGCACCATCACCGGAGAATCGTTGGA
66 CTCGA-GCATGTGCTGGTGC-CACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * * *
19763592 GAACCTAACCGACAGCATTGGGGTTCCGATGATCGGGGGGGTC-G-GGGTGTGTGCGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGAGGGGGTGTGCGCACATGAT
*
19763655 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
19763720 CACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
19763785 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
19763850 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCCGA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC-AAAACTCCTTCC-A
** * *
19763914 AAAAATTGAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
* * *
19763979 TCTTGCCATGAAACTTCACGTGAAAGCTTAAGCGACCATTGTATGAATTTACAAGGCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
19764044 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * * * * **
19764109 TGCGCATCCCGTCTCTCTGGTCAACGTAGTGCCCACCCGCCCGCTCGCACGCTCGTTTTGTCTCT
646 TGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCCCG-CCGCCCGCCCACTCGTTTCGTCGAT
*
19764174 TGGCTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCGGACCAGA-TCGAGGGTTGCAGCAGCA
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCAGCAGCA
* * * * *
19764238 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCTCCCCTCTGGCTG
774 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
19764303 GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAC
839 GCTGAGCGCCCGCACGCTCGTTTCGAGGGTTCACTTAG
19764341 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAATCTAAGATCGAACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C----A--G-ACC-GA-
* * *
19764406 CGAGGGT-TGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGG
43 -G-GGTTGTGC--CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGG
* ** * * * * *
19764470 GCACCATCGTCGGAGCATCATCAAAGAACCTGACCGGCGGCATTAGGGTTCCGGCAATCAGGGGG
104 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * **
19764535 CCGGGGGGGGAGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCTGT
169 CCGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
19764600 ATCCCTCATCAAACCTCAAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
234 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
19764665 GCCAGTAGCCATTAAAGTGTCCGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCGTGTACT
299 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * ** *
19764730 CTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAATAGAAATACAAGGATCATGTCTACCAAT
364 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAG
* * *
19764795 TTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAAT
429 TTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * *
19764860 CATGAAATATAGAAAATGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
493 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
19764925 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTGCCTAAACCCAC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCAT-ACAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
19764989 CAACTACCCTATCGATGCACGGCTTGCACATCCCGTCTCTCTGG-CTGACGTA--G--TG--C-C
622 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTGCCTGCCCGC
** * ** *
19765046 CGCCCGCCCGTTCGTTTCATC-AGTCAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA
686 CGCCCGCCCACTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * * *
19765110 ATCAGACTGAGGGTTGCAACAGCAAGAAT-GGTAGCATGCAGAGAGGGACTCGACCGATCCCCGG
750 ACCAGACTGAGGGTTGCAGCAGC-AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * * * *
19765174 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAGGGT-TTTTCGTGGGTTGACTTAG
814 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGAGGGTTCACTTAG
* * * * * *
19765236 GCATGCGGAGTTCATTACCAGTCTAAGCATATCGAGTTCATTCCCAG-TCTAAGATTGGATCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAG---ATCG-G---A---CCAGACCGAGGGTT-G-T--G-
**** * * * ** *
19765300 CCGAGGGTTTTGCACATCGGCT-G-TCAATGTGCTGGTGTCGTATTTTTTTTCACCGGGGCACCA
51 CC-A-GCACATG--C-TGGGCTCGAGC-ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA
** * * * *
19765363 ---TC---G---C--CGGAGAACCTGACCGGTGGCATTAGGGTT-CTAGTGATCGGGGGGATCGG
110 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGG-CCGG
* * * * *
19765416 -GGGGCTGTGCACACATGATGTGTGATGGGTGCTGGTACATGGCCCTTATATTGGCCCTCTATCC
173 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
19765480 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCAA
238 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
19765545 GTAGCCATTAAAGTGTCTGACATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTT
303 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
19765609 GAGTTTTTAGCTGAATTTTTTTGTCCATACCAAAAAAAATACAAGGATCACATTTAACAAGTTTG
368 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTG
* * * * * *
19765674 GGGCCAAAACTCCTTTCGAAAACATTTTAAAAAATCTCGAACTGT-AAAAGTTTTAAAAATCGTG
433 GGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
19765738 -AAAATAG-AAACGAGTCATCTTG-CAAG-AACTT-ATGTGAAGGCTTAAGGGACCATTGTATGA
497 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
19765798 CATTTACAAGCC-TAAAAATGGCATTGGC-T----AAA-CT----A----CCTAAACCCACCTAC
562 -ATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
19765848 CACACTATCGATCC-CAGGCTTGCGCAT-CCGTCTCTCAGGCC-GACGT-G-G--TG--AG-CGC
626 CACCCTATCGATCCAC-GGCTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTGCCTGCCCGCCGC
* * * * * ** *
19765903 CCACACGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTCCATTCCCAGAGTAAGATCGGACTA
689 CCGCCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * **
19765968 GA-TCGAGGGTTGCAGCAACAGGATCGACAG--C-CA-A-GGGGA---GGTCGATCCCATG-TT-
754 GACT-GAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
* * * * *
19766022 -GCATCTCGCCCCTATGGCCGGCTAAGCACCCGCACGCTTGTTTCGAGGGTTCACTTAG
818 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGAGGGTTCACTTAG
* * *
19766080 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTATGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
* * * *
19766145 CTCGAGCATATGCTGGTGCCGCATTTTTCTTCACCGGGGCACCACCGTCGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
19766210 ACCTGATCGACGGCATTGGGGTTCCGACGGTCAGGGGGCCCGGAGGGGGTGTACGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGAGGGGGTGTGCGCACATGATGT
*
19766275 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
19766339 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19766403 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAATTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
19766468 GTGCATGCCAAGAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAA
** * ** **
19766533 AATTTTAAAAAATTACAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCATCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* *
19766598 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGACATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19766663 ATTGGAATGCAGAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
19766728 GCATCCTGTCTCTCTGG-CTGACGTAGTGCCTACCCGCCGGCCCGCCCACTCATTTCGTCGTTTG
649 GCATCCCGTCTCTCTGGCCAG-CGTAGTGCCTGCCCGCC-GCCCGCCCACTCGTTTCGTCGATTG
* * * * *** *
19766792 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTATGGTAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGGA
* * * * * * * * *
19766857 TCGGCAGCACGTAAAGGGGGACCTGGTCGATCCCCGACTTGTGCATCCCACCCCTATGGCAGGCT
777 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
19766922 GAGCACCCGCACTCTCGTTTCGAGGGTTCACTTAG
842 GAGCGCCCGCACGCTCGTTTCGAGGGTTCACTTAG
* *
19766957 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
* * * * *
19767022 CTCAAGCATATGCTGGTGCCATATTTTTCTTCACCGGGGCACCACCGTCGGAGCAT-GACCGGAG
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG-TCGGAG
*
19767086 AACCTGACCGACGGCATTGGGGTTCCGACGGTCGGGGGGCCCGGAGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGAGGGGGTGTGCGCACATGATG
* *
19767151 TGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19767216 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
19767281 ATGGGGACACTTTTTTCGAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
19767346 TATGCATGCTAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
19767411 AAGTCTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* *
19767476 TGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * ** * * * *
19767541 ATTGGCACATAGAAATATGAAGATGTGCCTAAAGGCACCTGCCACCCTATCAATACACAGCTTGC
584 ATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
19767606 GCATCCCGTCTCT-AGGCCAGCGTAGTGCCTGCCCGCTCGCCCGCCCACTTGTTTCGTCGATTGG
649 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCCCGC-CGCCCGCCCACTCGTTTCGTCGATTGG
* * * * *
19767670 CTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGGAT
* * * ** *
19767735 CCGCAGCATGCAGAGGGGGACCCGATCGATCCTCAACTTGCGCATCCCGCCCCTCTGGCCGGTTG
778 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
19767800 AGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
843 AGCGCCCGCACGCTCGTTTCGAGGGTTCACTTAG
* * * ****
19767834 GCATACGGAGTTCATTCCCAGTGTAAGATAGGACCGGACCGAGGGTTGCAATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
*
19767899 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * * * *
19767964 ACCTAACCGACGACATTGGGTTTCTGATGATCGGGGGGACC--AGGGGGTATGCGCTCATAATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGAGGGGGTGTGCGCACATGATGT
* *
19768027 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTAGCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19768092 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19768157 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGATTTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * * *
19768222 GTGCATGCCAAAAAAAATGCAAGGATCACATCTATAAATTTTGGGGCGAAAACACCTTCTGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAA
* * ** *
19768287 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTTGTTT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
19768352 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19768417 ATTGGCATGCAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *** * * *
19768482 GCATCCGGTCTCTCTAGATGGCGTAGTGCC--CAC-CCGCCCGCCCGCTCGTTTCGTCGGTTGGC
649 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCCCGCCGCCCGCCCACTCGTTTCGTCGATTGGC
* * * * * * * * * *
19768544 TTAAGCATACGTAGTTCATTCCTAGTTTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGGATC
* * * * *
19768609 GGCAGCACACAGAGGGGGACCCGGTCGATCCTCGGCTTGCCCATCCCGCCCCTTTGGCCGGCTGA
779 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
19768674 GCGCCCATACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
844 GCGCCC--GCAC--G-CTCGT---TT--C----G---A-GG-GTTCA----C--T-TAG
* * * **
19768733 GCATACGGAGTTCATTCACAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
*** * *
19768798 CTC-AGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCAGCGCCGGAGCATCGTCGGAG
66 CTCGA-GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
19768862 AACCTGACCGACGACATTGGGGTTGC-AGCAATCGGGGGGGCCGG-GGAGGTGTGCGCACATGAT
130 AACCTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGAGGGGGTGTGCGCACATGAT
*
19768925 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * * *
19768990 CACACCCCCTTAAAGAGGATTTGAGATTTTACAAGTTTGCTGGCAGTAGCAATAAAAGTTTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* ** *
19769055 AATTGGGATGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
19769120 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACTAATTTTGGGACCAAAACTCCTTCCGAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC-AA
* * ** *
19769185 AAAATTTTAAAAAATCCCGAACCGCAAAACA--TTCAAAAATCTTGAAAAATAGAAAATAAGTCG
452 AAAATTTTAAAAAATCCCGAACCGTAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
*
19769248 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
19769313 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CC---C--T--ACGGCT
581 GGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
19769370 TGCGTATCCCGTCTCTCTGGCCAGGGTAATG-CT------CGCCCGCTCGCTCATTTCATCGGTT
646 TGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCCCGCCGCCCGCCCACTCGTTTCGTCGATT
* * * * *
19769428 GGCTAAGGCATACGAAGTACATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGG
** * * * * * * *
19769493 ATCGATAGCACACAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCTCTCCCCTTTGGCCGAC
776 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
19769558 TGAGCGCCCGCACGCTCGTTTCGTGGGCTGACTTAG
841 TGAGCGCCCGCACGCTCGTTTCGAGGGTTCACTTAG
* * *
19769594 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
* * ** * *
19769659 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTAGCGCACCATCGTCGGAGCATCG-CCGACG
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGA-G
*
19769723 AACCTGACCGACGGCATTAGGGTTCC-AGCGATCGAGGGGGCCGGAGGGGGTGTGCGCACATGAT
130 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCG-GGGGGCCGGAGGGGGTGTGCGCACATGAT
* * *
19769787 GTGCGATGGGTGCTGGTACTTGGCCCCTATTTTGGCCCCCTATCCCTCACCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
19769852 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19769917 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGCATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
19769982 TT-TAGAATACCAGAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCTTTCCAA
388 TTGT-GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* *
19770046 AAAATTTTTAGAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
452 AAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
19770111 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
19770176 GGCATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
581 GGCATTGGCATA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
19770240 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
645 TTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCCCGC
19770281 TCGTTCCGTC
Statistics
Matches: 5110, Mismatches: 638, Indels: 383
0.83 0.10 0.06
Matches are distributed among these distances:
825 5 0.00
826 35 0.01
827 1 0.00
828 3 0.00
829 3 0.00
830 2 0.00
831 1 0.00
832 1 0.00
833 1 0.00
834 4 0.00
835 6 0.00
836 33 0.01
837 204 0.04
838 91 0.02
839 7 0.00
840 14 0.00
841 7 0.00
842 14 0.00
843 75 0.01
844 41 0.01
845 2 0.00
846 9 0.00
848 3 0.00
849 5 0.00
850 1 0.00
851 2 0.00
853 6 0.00
854 93 0.02
855 37 0.01
857 39 0.01
858 16 0.00
859 2 0.00
860 5 0.00
861 157 0.03
862 270 0.05
863 138 0.03
864 7 0.00
865 1 0.00
866 75 0.01
867 2 0.00
868 5 0.00
869 48 0.01
870 17 0.00
871 41 0.01
872 14 0.00
873 150 0.03
874 29 0.01
875 383 0.07
876 378 0.07
877 650 0.13
878 247 0.05
879 142 0.03
881 3 0.00
882 6 0.00
883 3 0.00
884 5 0.00
885 8 0.00
886 1 0.00
887 178 0.03
888 6 0.00
890 1 0.00
891 32 0.01
892 4 0.00
893 1 0.00
894 4 0.00
895 51 0.01
896 142 0.03
897 8 0.00
898 8 0.00
899 282 0.06
900 282 0.06
901 3 0.00
902 10 0.00
903 94 0.02
904 456 0.09
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGCCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGAGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCCCGCCGCCCGCCCACTCGTTTCGTCGATTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGAGGGTTCACTTAG
Found at i:19768737 original size:26 final size:26
Alignment explanation
Indices: 19768707--19768759 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19768697 GTTGACTTAG
* *
19768707 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19768733 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19768759 G
1 G
19768760 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19770942 original size:706 final size:709
Alignment explanation
Indices: 19769562--19771050 Score: 2208
Period size: 706 Copynumber: 2.1 Consensus size: 709
19769552 GCCGACTGAG
* * * * *
19769562 CGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
19769627 CCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
66 CCAGACCGAGGGTTGCGACAGCACATACTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCG
* **
19769692 CTAGCGCACCATCGTCGGAGCATCGCCGACGAACCTGACCGACGGCATTAGGGTTCCAGCGATCG
131 CTAGCGCACAATCCCCGGAGCATCGCCGACGAACCTGACCGACGGCATTAGGGTTCCAGCGATCG
* *
19769757 AGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATTTTGG
196 AGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCCTATATTGG
* * *
19769822 CCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGG
261 CCCCCTATCCCTCACCAAACCTCAAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
**
19769887 TTTGCTACCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
326 TTTGCTACCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
19769952 TGTACACTTCGATTTTTTAGCTGCATTTTTTTTAGAATACCAGAAAAAATAAAAGGATCACATCT
391 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTTAGAATACCAGAAAAAATAAAAGGATCACACCT
* *
19770017 ACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAATTTTTAGAAAATCCCAAACCGTAAAAAGTTTC
456 ACCAAGTTTGGGACCAAAACTCTTTCCAAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTC
*
19770082 AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
521 AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGAC
* *
19770147 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAA
586 CATTGTATGAATTTACAAGCCAAAAAAATGGCATTCGCAAGCAGAAATATGAAGATGTGCCTAAA
19770212 CCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
651 CCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* *
19770271 -GCCCGCCCGCTCGTTCCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTTTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGA
*** * ** * *
19770335 GTGGAGCGAGGGTTGCGGTAGCACATACTGGGCTCGAGCATGTGCTGGTGCCATAATTTTCTTTG
66 CCAGACCGAGGGTTGCGACAGCACATACTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCG
* * * * *
19770400 -TCGGGGCACAATCCCCGGAGCATCGCCGGA-GAACCTGACTGGCGGCATTGGGGTTCC-GACGA
131 CT-AGCGCACAATCCCCGGAGCATCGCC-GACGAACCTGACCGACGGCATTAGGGTTCCAG-CGA
* * *
19770462 TCGAGGGGGCCGGGGGGGGTGTGTGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATAT
193 TCGAGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCCTATAT
*
19770527 TGG-CCCCTATCCCTCATCAAACCTCAAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTAC
258 TGGCCCCCTATCCCTCACCAAACCTCAAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
19770591 AGG-TTGACTGCCAGTAGCCAATAAAGTGTTTGAAATGGGGACAGTTTTTTCAAATGGTCACAAA
323 AGGTTTG-CTACCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
19770655 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT-GCATGCCA-AAAAAATACAAGGATCA
387 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TAGAATACCAGAAAAAATAAAAGGATCA
* * * *
19770718 CACCTACCAAGTTTGGGACCAAAACTCTTTCCGAAGAAA-TTTTAAAAAATCTCTAACTGTAAAA
451 CACCTACCAAGTTTGGGACCAAAACTCTTTCC-AAAAAATTTTTAAAAAATCCCAAACCGTAAAA
* * *
19770782 AGTTTCCAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTA
515 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTCCACGTGAAGGCTTA
19770847 AGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTCGCACA-CAGAAATATGAAGATGT
580 AGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTCGCA-AGCAGAAATATGAAGATGT
* * * *
19770911 GCCTAAACCCACCTACCACCCTATCGATCCACGGTTTTCGCATCCCGTCTCTCTGGCCGGTGTAG
644 GCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
19770976 T
709 T
** *
19770977 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCATACAAAGTTCATT-CCAGACTAAGATC
1 ---CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATC
* *
19771041 AAACCGGACC
63 AGACCAGACC
19771051 AATGGTTGTG
Statistics
Matches: 698, Mismatches: 71, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
706 253 0.36
707 160 0.23
708 222 0.32
709 19 0.03
710 44 0.06
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (709 bp):
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCAGACCGAGGGTTGCGACAGCACATACTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCG
CTAGCGCACAATCCCCGGAGCATCGCCGACGAACCTGACCGACGGCATTAGGGTTCCAGCGATCG
AGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCCTATATTGG
CCCCCTATCCCTCACCAAACCTCAAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTACCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTTAGAATACCAGAAAAAATAAAAGGATCACACCT
ACCAAGTTTGGGACCAAAACTCTTTCCAAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTC
AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCAAAAAAATGGCATTCGCAAGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
Found at i:19772492 original size:864 final size:861
Alignment explanation
Indices: 19770222--19779994 Score: 4442
Period size: 903 Copynumber: 10.9 Consensus size: 861
19770212 CCCACCTACC
* * * * * *
19770222 ACCCTATCGATC-CACAGCTTGCGCATCCCGTCTCTCTGGCCGGC-GTAGTGCCCGCCCGCTCGT
1 ACCCGATCGATCTC-CAGCTTGCGCATCTCGCCCCTCTGGCCGGCTG-AGCGCCCGCACGCTCGT
* * * * * * *** *
19770285 TCCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTTTAAGATCAGAGTGGAGCGAGGGTTG
64 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * ** * *** * **
19770350 CGGTAGCACATACTGGGCTCGAGCATGTGCTGGTGCCATAATTTTCTTTGTCGGGGCACAATCCC
129 CGGCAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGT
** * * * * *
19770415 CGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGG
194 TAGATCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCC--GGGGG
* * *
19770480 GTGTGTGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCAT
256 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCAT
* *
19770544 CAAACCTCAAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTGACTGCCAGTAG
321 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-CTGCCAGTAG
* * * *
19770608 CCAATAAAGTGTTTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
385 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
* ** *
19770673 TTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACACCTACCAAGTTTGGGAC
450 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGC
* * * * *** * *
19770737 CAAAACTCTTTCCGAAGAAATTTTAAAAAATCTCTAACTGTAAAAAGTTTCCAAAATCCTGAAAA
515 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATG-AAA
** *
19770802 ATAGAAAACGAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
579 ATAGAAAACGAGTCGTCTTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * ***
19770867 ACAAGCCAAAAAAATGGCATTCGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
644 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
19770932 TATCGATCCACGGTTTTCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTT
709 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCTCGTTT
* * ** * ** ** ** * *
19770997 CGTCGGTTGGCTTAGCCATACAAAGTTCATTCCAGACTAAGATCAAACCGGACCAATGGTTGTGG
770 CGTCGGTTGCCTTAGGCATACGGAGTTCATTCCAGTCTAAGATTGAATTGGACTGAGGGTTGCGG
* *
19771062 CAGTAGGATCGACAGGACGCAGAGGGGG
835 CAGCAGGATCG-CAGCACGCAGAGGGGG
* * * * *
19771090 ACCTCGACCGATCCCCTGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
1 ACC-CGATCGATCTCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
19771155 TTGTGGGTTGACTGAGGCGTACAGAGTTCATTCCCAGTCTAAGCTTACGAAGTTAATTCCCAGTC
65 TCGTGGGTTGACT------T--AG-G--CA-T---A--C---G-----G-AGTTCATTCCCAGTC
* * *
19771220 TAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTC-GTGCAGC
104 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC-CGGTGCCGC
* * * * ** *
19771284 ATTTTTCTTCACCGGGGCACCATCGCTGGAGCCTCGTCAAAGAACCTGACCGACGGCATTAGGGT
168 ATTTTTCTTCACCGGGGCACCATCGTTAGATCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
* * * *
19771349 TTCGGTGATCGAGGGGCCGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCT
233 TCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
19771414 TGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
298 TGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
19771479 TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCA
363 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
19771544 CAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAGAATAATACAAGTA
428 CAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGTA
*
19771609 TCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAA
493 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAA
19771674 AAAGTTTCGAAAATCATGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAATGTGAAGGCTT
558 AAAGTTTCGAAAATCATGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAATGTGAAGGCTT
* * *
19771739 AAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCGTTGGCACGTAGAAATATGAAGATGT
623 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT
* * * * **
19771804 GCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCGTCTTTTTGGCCGATGTAG
688 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
*
19771869 TGCCCGCCCGCTCGTTTCGTCGGTTGCCTTAGACATACGGAGTTCATTGCCAGTCTAAGATTGAA
753 TGCCCGCCCGCTCGTTTCGTCGGTTGCCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGAA
* * *
19771934 TTGGACTGGGGGTTGTGGCAGCAGGATCAGCAGCACACAGAGGGGG
817 TTGGACTGAGGGTTGCGGCAGCAGGATC-GCAGCACGCAGAGGGGG
* * *
19771980 ACCCGGTCGATCTCCAGCTTGCGCATCTCGGCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTT
1 ACCCGATCGATCTCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* **
19772045 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGCGTTTTG
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * *
19772110 GCAGCACATGTTGGGCTCGGGCATGTGCCGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTTA
131 GCAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTTA
* * * *
19772175 GATTATTGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTG
196 GATCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGTG
* *
19772240 TGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-CATCAA
259 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAA
* * * *
19772304 ACCTTGAGAACTGACAACCTCTTAAAGAGCATTTGAGATTTTA-AGGGTTTGCTGCCAGTAGCCA
324 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAGTAGCCA
*
19772368 TTAAAGTGTCTGAACTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
388 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
* * *
19772433 TAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAA
453 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAA
* * *
19772498 AACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGA-AAAATGTTTCAAAAATCATGAAAAAT
518 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-ACAAAAAGTTTCGAAAATCATG-AAAAT
* *
19772562 AGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTAC
581 AGAAAACGAGTCGTCTTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
19772627 AAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTA
646 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
19772692 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCATGCCGCTTGTTTCGT
711 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC---CCGCTCGTTTCGT
* * * * * * *
19772757 CGGTCGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTA
773 CGGTTGCCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATTGAATTGGACTGAGGGTTGCGGCA
* *
19772822 GCAGGATCGACAGCACGTAAAGGGGG
837 GCAGGATCG-CAGCACGCAGAGGGGG
* * * * * *
19772848 ACCCGATCGATCCCCGGCTTGCACATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTT
1 ACCCGATCGATCTCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
19772913 CGTGGGTTCACTTCGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
66 CGTGGG------T-----T---GA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCT
* * * * * *
19772978 AAGATCAGATCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAT
105 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCGCAT
* *
19773043 TTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGCATCATCGGAGAACCTGACCGACGG
170 TTTTCTTCACCGGGGCACCATCGT--TAG-AT--------CATCGTCGGAGAACCTGACCGACGG
*
19773108 CATTGGGGTTCCGGCGATCGAGGGGGTC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
224 CATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
19773172 ACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAG
288 ACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
19773237 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTT
353 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
19773302 CAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACTAA
418 CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
19773367 AATACAAGTATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTGTAAAAAATCC
483 AATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * * ** * * * * *
19773432 TGAATCGCAAAAAGTTTTGAAAATTGTAAAAATATAAAACGAGTCATCTTGCCATGAAACTTGAC
548 CGAACCACAAAAAGTTTCGAAAATCATGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAAT
* *
19773497 GTGAAGGCTTAAGGGACCATTCTATGAATTTATAAGCCATAAAAATGGCATTGGCATGTAGAAAT
613 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
* * *
19773562 ATGAAGATGTGCCTAAACCCACCTACCACCCAATCAATCCACAGCTTGCGCATCCCGTCTCTCTG
678 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
19773627 GCCGGCGTATTGCCCGCCCGCCCGTCCGCTCATTTCGTCGATTGGCCTTAGGCGTACGGAGTTCA
743 GCCGGCGTAGTGCCCGCCCG--C-T-CG----TTTCGTCGGTT-GCCTTAGGCATACGGAGTTCA
* * *
19773692 TTCCCAGTCTAAGA-TCAGATTGGACTGAGGGCTACGGCAGCAGGATCGGCAGCACGCAGAGGGG
799 TT-CCAGTCTAAGATTGA-ATTGGACTGAGGGTTGCGGCAGCAGGATC-GCAGCACGCAGAGGGG
19773756 G
861 G
* * * ** *
19773757 AACCGATCGATCCTCGA-TTTATGCATCTCGCCCCTCTGGCCGGCTTAGCGCCCGCACGCTCGTT
1 ACCCGATCGAT-CTCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
** *
19773821 TCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCA--G
65 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGA-C-CAGACCGAGGG
** ** * ** ** * ** * ** * *
19773883 -T-C-TAAG-ATCAAACT-GGATCGAGGGTTGCACCCGCACGCTCATTTCGTGGGTTGACTTAGG
126 TTGCGGCAGCA-CATGCTGGGCTCG-GGCATGTGCCGGTGC-CGCATTT--T-TCTTCAC--CGG
* * * * *** * * * * *****
19773943 CGTATCGATCCA-CGGTTTG-CCTATC--CCG-TCTCTCTGGCCGGC-GTAGTGCCCACCCGCCC
183 -G--GC-A-CCATC-GTTAGATC-ATCGTCGGAGAAC-CTGACCGACGGCATTGGGGTTCCG---
* ***** * * * * * *
19774002 GTACGCTCATTTCGTCGGTTGGCT-TAG-GCATACTGA-GTTC-ATTGCCAGT-CTAAAATTGG-
237 G--CGATCGGGGGGCCGG-GGGGTGT-GCGCACA-TGATGTGCGA-TG--GGTGC------TGGT
* ** ** ** *** *** * ** * * *
19774061 AC-TGGACCGAGGGTTACGGTAGCAGGAT-TGGCAGCACGCATAGGGGGAAC-CGACCGATCCTC
288 ACTTGGCCCTTGTATT--GG-CCCCCTATCCCTCATCAAACCT--CGAGAACTC-A-C-A-CC-C
* * * * * * * * * * *
19774123 GGCTTAAGCGTCCCGCCTTCTG-G----T-C-GGTTAGC-GCCCGTACACTCGTTTCATGGGT-T
343 -CCTTAA-AG---AGCATT-TGAGATTTTACAGGTTTGCTGCCAGTA-GC-C-ATTAAAGTGTCT
** * * * * * ** ** * * * **
19774179 GACTTAGGGATACGGATTTCATTCCCAAT-CT-A-AGCATACGGAGTTCA-TTCCCAGTCTAAAG
399 GAAATGGGGACAC---TTT--TTTCAAATGGTCACAAAAT-C-TTGTACACTT-CAAGTTTTTAG
* ***** ** ** * ** ** * * *
19774240 ATAGACGGACTAAG-GGTTGCCAGC-AATCTGGCGACACGAGCGGTGCGGCTTCGTGGGCACCAC
456 CT-GAATTTTTTTGTGCATGCCAACAAAAAT----ACA--AG-TAT-C-ACGTC-T----ACCAA
** * * ** *** * *** ** *** * *
19774303 G-CCGGAG--AAGACT--GACCG-AACCGTGTTTCGATAGGGTGGCGGGGGGGGTGTGCGCATAT
506 GTTTGGGGCCAAAACTCCTTCCGAAAAAAT-TTT--AAAAAAT--C-----CCG-AACCACA-AA
* * *** ** * * ****** * * * * * ** *
19774362 ATGTTTGGATGGTGGC-TGGTACTTGCCCTTTATTGGTC--CCTCATCAAACCTCCGAGAACTCA
559 AAGTTTCGAAAAT--CATGAAAATAGAAAACGAGTCGTCTTGC-CATGAAA-CT--TA-ATGTGA
** * * * * * *** ** * **
19774424 ACCCATGCAA--AAGCATT-TGA-GATTTTACAGGTTTGTTTGCCAGA-GGCCATT-AAAGTGTC
617 AGGC-T-TAAGGGACCATTGT-ATGAATTTACAAG---CCAT-AAAAATGG-CATTGGCA-TGT-
* * * * *** ** * * ** ** * *
19774483 TGAAAT-TGGACACTTTTTTTAAA-TGAGTCAAAAAATCT-T-G-TCACTTCGAGTTTTTAGCTG
672 AGAAATATGAAGA-TGTGCCTAAACCCA-CCTACCACCCTATCGATC-C-ACG-G--CTT-GC-G
* *** * * ** ** * * ** * * * ***
19774543 AAT-TTTTTTACGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACT
728 CATCCCGTCT-CTC-TGGCCGGC-GTAGTGC-CCG--CCCG-CT--C--GTTT-CGTC---GGTT
** * *** * * * * * * *
19774606 -CCTTCTCAAAAACTTTTAAAAAATCTTGAATCCTAAAAAGTTTCAAAAATCGTGAAAAATAGA-
778 GCC-T-T---AGGC--AT-ACGGA-GTTCATTCC-----AG--TCTAAGAT--TG--AATTGGAC
** * * * *** * * * * ** *
19774669 AAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTA-AGGG
823 TGA-GGGTTG-C--GGCA-GCAGGATCGC-AGCACGCAGAGGGGG
* * ** *** ** * ** * ***** * *
19774713 ACCATTGTAT-GAAT-T-TA-CAAGC-CATAAAAGTGGCAT-TGGCAAGCAGA-AATATG-AAGA
1 ACC--CG-ATCG-ATCTCCAGCTTGCGCAT-CTCG-CCCCTCTGGCCGGCTGAGCGCCCGCACGC
****** * * * *
19774770 T-GTTTC-TAAACCCACCTA-CCACCCTATC-GA-TCCACGGCTTGCGCATCCAGTCT---CTCT
60 TCGTTTCGTGGGTTGACTTAGGCA---TA-CGGAGTTCA----TT---C--CCAGTCTAAGATC-
* ** * * * ** *** * * *
19774827 GG-CC-GA-CGTAGTG-CCCGCCCGCCCATCCGC-CCGCTCGTTTTATCGGTTGGC-TTAGGCAT
111 GGACCAGACCG-AGGGTTGCGGCAGCACAT--GCTGGGCTCG-GGCAT--G-TGCCGGT--GC-C
* *** * * ** ** * ** * *
19774886 ACAGAGTTCATTC-CC-AGTCTAAGATCGGACCAGAATGAGGGTTGCGGCAGCACATGCTGGGCT
166 GCATTTTTC-TTCACCGGGGC-ACCATC-G-TTAG-ATCATCG-T-CGG-AG-A-A-CCT-GAC-
* * **** * * * *
19774949 C-A-GGCATATGGTGGTGCC-GC-ATTTTTCTTCGTCGGGGCAC-CATCGTCG-GAGAACCTGAC
218 CGACGGCAT-TGG-GGTTCCGGCGA-------TCG-GGGGGC-CGGGGGGT-GTGCGCACATGAT
** * * **** *** * * * * * **
19775008 CAGCAGCATTGGG-GTTTCGGCGA-TTGGGGGGCAGGGGGGGTGTGCGCACATGATGCGTGATGG
271 GTGC-G-A-TGGGTG-CT-GG-TACTT----GGCCCTTGTATTG-GC-CCCCT-ATCCCTCATCA
** * *** * ** *** **** * **** *
19775071 ATGCT-G-GTACT--TGGCCCTTTGATTG-GCCCCCT-ATCCCTCATCAAACCT-CAAGAACTCA
323 AACCTCGAGAACTCACACCCCCTT-AAAGAG-CATTTGAGATTTTA-CAGGTTTGC-TG--C-CA
** * * * * * *** * * * * * * * * * *
19775129 CAACCCCTTAAAGAGCATTTGAGAT-TTTATAGGTTTTCTGCCAATAGCCATTAAAGTGTGTGGA
381 GTAGCCATTAAAGTG--TCTGAAATGGGGACA-CTTTT-TTCAAATGGTCA-CAAAATCT-TGTA
** * *
19775193 -A-TGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
440 CACT--TCA-A-GTTTTT---A--G---------C-TG-A-A-TT----TTTTT-G-TGCA----
* * * * * * *
19775256 TTTGTGCAAGCCCAAAAAAATACAAGGATCATGTCTACTAAGTTTGCGGCCAAAAATCCTTCTGA
473 --TG-CCAA---C--AAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* ** * *
19775321 AAAAATTTTAAAAAATCACGAACCGTAAAAAGTTTCGAAAATCCTGAAAATA-AAAACGAGTTGT
530 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAATAGAAAACGAGTCGT
* * * * * *
19775385 CCTACCTTGAAACTTCACGTG-AGGCTTAAGGCG-CCATTGTAGGAATTTACAAGCCATAAAAAT
595 CTTGCCATGAAACTTAATGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19775448 GGCATTGGCACGTAGAAATATGAAGATGTGCATAAACCCTCCTACCACCCTATCGATCCATGGCT
659 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19775513 TGCTCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCTGCTCGCTCGTTCCGTCAGT
724 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG-CC--C-GCTCG-T--TT-CGTCGGT
* * * * * * *
19775578 TGGCTTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGAA-TCGAATCGAGGGTTGTGACAGCA
777 TGCCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGAATTGGACT-GAGGGTTGCGGCAGCA
** * *
19775642 ATATCGACAGCATGCAGAGGGAG
840 GGATCG-CAGCACGCAGAGGGGG
* * * * * *
19775665 ACCC-AGTCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGGACGCTCGTT
1 ACCCGA-TCGATCTCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
19775729 TCGTGGGTTGACTTAGACATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCATCT
65 TCGTGGGTTGACTTAGGCATACGGAGTTCATT-C----C----C------AG----------TCT
* * * *
19775794 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGATCCGGCATGTGCTGGTGCCACAT
105 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCGCAT
** ** * * * * ** * *
19775859 TTCACTTCGTCGGGGCTCCATCGCTGGAGCATCACCAGAGAACCTGACCGACAGCATTGGGGTTC
170 TTTTCTTCACCGGGGCACCATCGTTAGATCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC
* * *
19775924 CGACGATCGGGGGGTCGGGGGGGCTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCT
235 CGGCGATCGGGGGG-CCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * * *
19775989 TATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGAT
298 TGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
19776054 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTGAAATGGTCA
363 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * * *
19776119 CAAAATCTTATACCCTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
428 CAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGTA
* ** * * * **
19776184 TCGCGTCTACCAAGTTTGATGACAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACTGCAA
493 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAA
* * * * * *
19776249 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTAAAGGCT
558 AAAGTTTCGAAAATCATG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAATGTGAAGGCT
* *
19776314 TAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATG
622 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATG
* *
19776379 TGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGTATCTCTGGCCGGCGTA
687 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * *
19776444 GTGCCCACCCGCCCGCCTGCCCGTTTCATCAGTTGGCTTAGGCATACGGAGATCATTCTCAGTCT
752 GTG----CCCGCCCG-CT---CGTTTCGTCGGTTGCCTTAGGCATACGGAGTTCATTC-CAGTCT
* * ** * ** * * *
19776509 AAGATCGGACCGAACCAATGGTTGCAGCAGCAGGATCGATAGCACGCAGAGGGGG
808 AAGATTGAATTGGACTGAGGGTTGCGGCAGCAGGATCG-CAGCACGCAGAGGGGG
* * * * * *
19776564 ACCCGACCGATAC-CC-GACTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGTTCAT
1 ACCCGATCGAT-CTCCAG-CTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
19776627 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATAAGGAATTCATTCACAGT
64 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGG---------AC---
* * * **
19776692 CTAAGATTGGACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATATGCTGGTGCCTA
115 C---------A--G-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCGC
* * * ** * * * *
19776757 ATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCATCGAAGAACCTGACCGACGGTATTGGGGT
168 ATTTTTCTTCACCGGGGCACCATCGTTAGATCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
* *
19776822 TCCGGCGATCGAGGGGACCGAGCGGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
233 TCCGGCGATCG-GGGGGCCG-G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
19776887 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
295 CCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
19776952 GATTTTACAGGTTTGCTGCCAGCAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
360 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * *
19777017 TCATAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTGTTTATGCATGCGAAGAAAAATACAA
425 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * * ** * *
19777082 GGATCATGTGTACCAAGTTTGGGGGCAAAACTCCCCCCGAGAAAATTTTAAAAAAATCCCGAATC
490 GTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACC
** * * * * * *
19777147 ACCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTCGCCATGAAGCTTCACGTGA
554 A-CAAAAAGTTTCGAAAATCATG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAATGTGA
* * *
19777212 AGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGA
617 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
* * *
19777277 ATATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGCCG
682 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
19777342 GCATAGTGCCCGCCCGCTTGCCCGCTTGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCC
747 GCGTAGTGCCCGCCCGC-T-----C--GTTTCGTCGGTTGCCTTAGGCATACGGAGTTCATT-CC
* ** * * * *
19777407 AGTCTAAGATTGGACCGGAC-GAAGGGTTGCGGCAGCAGGATTGGTATCACACAGAGGGGG
803 AGTCTAAGATTGAATTGGACTG-AGGGTTGCGGCAGCAGGA-TCGCAGCACGCAGAGGGGG
* * * * * * *
19777467 ACCAGGTCGATCCCCAGCTTGTGCATC-CATCCCCTCTGGTCGGCTGAGCGCCCGCACGTTCGTT
1 ACCCGATCGATCTCCAGCTTGCGCATCTC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * *
19777531 TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCCAAGATCGGACCAGACCGGGGGTTGC
65 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * * * * * *
19777596 AGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGTC
130 GGCAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTT
* * * * * * *
19777661 GGAGCATCGCCAGAGAA-CTCGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGGCGGGGGGT
195 AGATCATCGTCGGAGAACCT-GACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGT
** *
19777725 GTGCGCACATGATGTGTAATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCA
258 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCA
* *
19777789 AACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCA
323 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
19777854 TTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTAGTACACTTTAAGTTTT
388 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
** * * * *** *
19777919 TAGCCAAATTTTTTTATGCATGCCAACAAACATACAAGTATCGCCAATACCAGGTTTGGGGCCAA
453 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAA
* * * *** *
19777984 AACTCCTTCCGAGAAAATTTTAAAAAATCTCAAATTGCAAAAAGTTTCAAAAATCATGAAAAATA
518 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATG-AAAATA
* * *
19778049 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAA
582 GAAAACGAGTCGTCTTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
19778114 ATG-AATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTA
647 A-GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
19778178 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGGCGTAATGCCAGCCCGCCCGCTCGTTTCG
711 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-A-G--TGCCCGCCCGCTCGTTTCG
* * * ** *
19778243 TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTGCGG
772 TCGGTTGCCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGA-ATTGGACTGAGGGTTGCGG
19778307 CAGC---A---C-GCA---A-AGGGGG
835 CAGCAGGATCGCAGCACGCAGAGGGGG
* * * ** * * * *
19778323 ACGCGACCAATCTCTGGCTTGCGCATC-CTACCCCTATGGCCGGCTGAGCGCCCGTATGCTCGTT
1 ACCCGATCGATCTCCAGCTTGCGCATCTC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * ** ** *
19778387 TCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCA--G
65 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--GGACCAGACCGAGGG
** * ** * ** * ***
19778450 TCTAAGATCAG-ACCA-GACT--G--AAGG--T-TG-C-G-GCAGCA-CATGCTGGGCTC-GGG-
126 T-TGCG-GCAGCA-CATG-CTGGGCTCGGGCATGTGCCGGTGCCGCATTTTTCTTCAC-CGGGGC
* ** * * *** *** * *
19778500 --CAT-G-TA-CTGGT-GCCGTA-ATTTTCTTCAACGGTATTGGGGTTCCGGCGATCGGGGGGGC
186 ACCATCGTTAGATCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGC
* * *
19778558 CAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
250 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATC
* * *
19778623 CCTCATCAAACCTTGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCC
315 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
19778688 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAACTCTTGTACACTT
380 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * ** * * *
19778753 CGAGTTTTTAGCTGAATTTTTTTGTGGATACCAACAAAAATGGAAGGATCACGTCTACGAATTTT
445 CAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTT
* * * * *
19778818 GGGGCCAAAACTCATTCCAAAAAAATTTTAAAAAATTCCGAACCATAAAAAGTTTCAAAAATCAT
510 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCAT
* * * * *
19778883 GAAAAATAAAAAATGAGTCGTCTTGCCATGGAACTTCACGTGAAGG-TTAAGGGACCATTGTATG
575 G-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATG
* * * *
19778947 AATTTACAAGCCATGAAAATGGCATTGGAACGTAGAAATATGAAGATGTGACTAAACCCACCTAC
639 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
19779012 CACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCCGCC
704 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--T----GCCCGCC
* * * ***
19779077 CGGTTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA-TCAGACCA
761 C----GCTCGTTTCGTCGGTTGCCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGA-ATTG
* * * * *
19779141 GACTGAGGGTTGTGGCAGTAGGATTGGTAGCACACAGAGGGGG
820 GACTGAGGGTTGCGGCAGCAGGA-TCGCAGCACGCAGAGGGGG
** * * * * * * * *
19779184 ACCCTTTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGCGTCTGCACGCTCGTTG
1 ACCCGATCGATCTCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
19779249 CGTGGGTTGACTGAGGCATACGGAGTTCATTCCCTA-TCTAAGCATACGGAGTTCATTCCCAGCC
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAG-AT-C-G-G---------A--C
* ** ** *
19779313 CAAAATCGGACCCGACCGGGTGTTGCGGTAGCACATGCTGGGCTCGCCCATGTGATGGTGCTGCA
115 C---A---GA-CCGA---GG-GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCGCA
* * * *
19779378 TTTTTCTTCGCTGGGG---CA-C-------CATCGTCGGAGAACCTAACCGGCGGCATTGGGGTT
169 TTTTTCTTCACCGGGGCACCATCGTTAGATCATCGTCGGAGAACCTGACCGACGGCATTGGGGTT
** * * * *
19779432 CCGATGGTCGGGGGGGCCGGGGGCTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTT
234 CCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
19779497 TATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGAT
298 TGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
19779562 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
363 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
19779627 CAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATACCAGA-AAAAATACAAGG
428 CAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGT
* *
19779691 ATCACG--T--C-----T---------A------CCGAAAAAATTTTTAAAAATCCTGAACCGA-
492 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-AC
** * * *
19779731 AAAAAGTTTTAAAAATCGTGAAAAAGTAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAG
556 AAAAAGTTTCGAAAATCATG-AAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTAATGTGAAG
* * *
19779796 GCTTATGGGACCATTGTATGAATTTACACGCCATAAAAATGGCATTGGCATGGAGAAATATGAAG
619 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
** * * * *
19779861 ATGTGCCTAAACCCACCTACCACCCTATCGATCCTTGGCTTGCTCATACCATCTCTCTGGCCAGC
684 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * ** * *
19779926 GTAGTGCCCGCCCGCCCACTCATTTCATCAATTGGCTTAGGCATACGAAGTTCATTCCTAGTCTA
749 GTAGTGCCCGCCCG----CTCGTTTCGTCGGTTGCCTTAGGCATACGGAGTTCATTCC-AGTCTA
19779991 AGAT
809 AGAT
19779995 CGGATCGAAC
Statistics
Matches: 6740, Mismatches: 1494, Indels: 1348
0.70 0.16 0.14
Matches are distributed among these distances:
840 2 0.00
841 201 0.03
842 279 0.04
843 1 0.00
845 9 0.00
846 3 0.00
849 77 0.01
850 5 0.00
851 1 0.00
852 1 0.00
853 2 0.00
854 1 0.00
856 94 0.01
857 7 0.00
858 4 0.00
859 3 0.00
860 17 0.00
861 146 0.02
862 3 0.00
863 130 0.02
864 245 0.04
865 236 0.04
867 52 0.01
868 250 0.04
869 175 0.03
870 3 0.00
872 182 0.03
873 15 0.00
874 217 0.03
875 55 0.01
876 15 0.00
877 112 0.02
878 12 0.00
879 13 0.00
880 11 0.00
881 19 0.00
882 41 0.01
883 25 0.00
884 20 0.00
885 12 0.00
886 7 0.00
887 4 0.00
888 10 0.00
889 117 0.02
890 72 0.01
891 267 0.04
892 66 0.01
893 329 0.05
894 213 0.03
895 130 0.02
896 13 0.00
897 16 0.00
898 7 0.00
899 171 0.03
900 221 0.03
901 285 0.04
902 57 0.01
903 725 0.11
904 235 0.03
905 51 0.01
906 3 0.00
907 4 0.00
908 19 0.00
909 121 0.02
910 13 0.00
912 7 0.00
913 6 0.00
914 5 0.00
917 1 0.00
918 7 0.00
919 16 0.00
920 10 0.00
921 2 0.00
922 10 0.00
923 11 0.00
924 3 0.00
925 7 0.00
926 16 0.00
927 16 0.00
929 2 0.00
930 4 0.00
931 10 0.00
932 7 0.00
933 5 0.00
934 5 0.00
935 4 0.00
936 9 0.00
937 1 0.00
938 2 0.00
939 7 0.00
940 8 0.00
941 10 0.00
942 6 0.00
943 25 0.00
944 6 0.00
945 6 0.00
946 13 0.00
947 12 0.00
948 1 0.00
949 10 0.00
950 5 0.00
951 20 0.00
952 30 0.00
953 28 0.00
954 29 0.00
955 26 0.00
956 32 0.00
957 19 0.00
958 14 0.00
959 25 0.00
960 9 0.00
961 12 0.00
962 4 0.00
963 17 0.00
964 5 0.00
965 12 0.00
966 16 0.00
967 19 0.00
968 11 0.00
969 29 0.00
970 20 0.00
971 11 0.00
972 4 0.00
973 22 0.00
974 22 0.00
975 15 0.00
976 18 0.00
977 4 0.00
978 18 0.00
979 14 0.00
980 8 0.00
981 3 0.00
982 7 0.00
983 12 0.00
985 1 0.00
986 10 0.00
987 9 0.00
988 10 0.00
989 3 0.00
990 1 0.00
992 1 0.00
993 1 0.00
994 4 0.00
995 4 0.00
997 7 0.00
998 1 0.00
999 7 0.00
1000 4 0.00
1001 4 0.00
1002 4 0.00
1004 3 0.00
1005 1 0.00
1008 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (861 bp):
ACCCGATCGATCTCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
GCAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTTA
GATCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGCC
TTAGGCATACGGAGTTCATTCCAGTCTAAGATTGAATTGGACTGAGGGTTGCGGCAGCAGGATCG
CAGCACGCAGAGGGGG
Found at i:19772964 original size:26 final size:26
Alignment explanation
Indices: 19772928--19772980 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19772918 GTTCACTTCG
19772928 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19772954 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19772980 G
1 G
19772981 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19773876 original size:26 final size:26
Alignment explanation
Indices: 19773836--19773888 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19773826 GTTGACTTAG
*
19773836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19773862 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19773888 G
1 G
19773889 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19774219 original size:26 final size:26
Alignment explanation
Indices: 19774188--19774237 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19774178 TGACTTAGGG
*
19774188 ATACGGATTTCATTCCCAATCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
*
19774214 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAATCTAA
19774238 AGATAGACGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:19775782 original size:26 final size:25
Alignment explanation
Indices: 19775746--19775796 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
19775736 TTGACTTAGA
*
19775746 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCA-TCTAAG
*
19775772 CATATGGAGTTCATTCCCATCTAAG
1 CATACGGAGTTCATTCCCATCTAAG
19775797 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (25 bp):
CATACGGAGTTCATTCCCATCTAAG
Found at i:19776683 original size:26 final size:26
Alignment explanation
Indices: 19776644--19776696 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19776634 GTTGACTTAG
* *
19776644 GCATACGGAGTTCATTC-CAAGTCTAA
1 GCATAAGGAATTCATTCAC-AGTCTAA
19776670 GCATAAGGAATTCATTCACAGTCTAA
1 GCATAAGGAATTCATTCACAGTCTAA
19776696 G
1 G
19776697 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAATTCATTCACAGTCTAA
Found at i:19776733 original size:900 final size:894
Alignment explanation
Indices: 19774892--19780019 Score: 5716
Period size: 903 Copynumber: 5.8 Consensus size: 894
19774882 GCATACAGAG
** * *
19774892 TTCATTCCCAGTCTAAGATCGGACCAGAATGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATA
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATG
* * * *
19774957 TGGTGGTGCCGCATTTTTCTTCGTCGGGGCACCA--TC---G-T-CGGAGAACCTGACC-AGCAG
66 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCGGAGATACCGAGAACCTGACCGA-CGG
* * * * * *
19775014 CATTGGGGTTTCGGCGAT-TGGGGGGCAGGGGGGGTGTGCGCACATGATGCGTGATGGATGCTGG
130 CATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
19775078 TACTTGGCCCTT-TGATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAACCCCTTAAAG
194 TACTTGGCCCTTAT-ATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAG
* * * * * *
19775142 AGCATTTGAGATTTTATAGGTTTTCTGCCAATAGCCATTAAAGTGTGTGGAATGGGGAGACTTTT
258 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
19775207 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCCAA-
323 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAAC
* * * * *
19775271 AAAAATACAAGGATCATGTCTACTAAGTTTGCGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAA
387 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * * * * * *
19775336 TCACGAACCGTAAAAAGTTTCGAAAATCCTG-AAAATA-AAAACGAGTTGTCCTACCTTGAAACT
452 TCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
19775399 TCACGTG-AGGCTTAAGGCG-CCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
517 TCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
* * * * *
19775462 GAAATATGAAGATGTGCATAAACCCTCCTACCACCCTATCGATCCATGGCTTGCTCATCTCGTCT
581 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
19775527 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCTGCTCGCTCGTTCCGTCAGTTGGCTTAAGCATAC
646 CTCTGGCCGGCGTAGTGCCCGCCCGCCCG-C--CT-GCTCGTTTCATCAGTTGGCTTAGGCATAC
* * * * * ** * *
19775592 AGAGTTCATTCCCAGTCTAAGATTGAATCGAATCGAGGGTTG-TGACAGCAATATCGACAGCATG
707 AGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAG-CAGCAGGATCGATAGCACG
* * * * *
19775656 CAGAGGGAGACCC-AGTCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGG
771 CAGAGGGGGACCCGA-TCGAT-CCCGGCTTGTGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGC
* * *
19775720 ACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATTCCTAGTCTAAGCATATGGAG
834 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAAGGAA
*
19775781 TTCATTCCCA-TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGATCCGGCATG
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATG
** * *
19775845 TGCTGGTGCCACATTTCACTTCGTCGGGGCTCCATCGCTGGAGCATCACCAGAGAACCTGACCGA
66 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTC-GGAG-AT-ACC-GAGAACCTGACCGA
* * *
19775910 CAGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGCTGTGCGCACATGATGTGCGATTGGTGC
127 CGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGC
*
19775975 TGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACAACCCCTTAA
191 TGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAA
*
19776040 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
256 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
19776105 TTTTGAAATGGTCACAAAATCTTATACCCTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA
321 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** *
19776170 CAAAAATACAAGGATCGCGTCTACCAAGTTTGATGACAAAACTCCTTCCGAAAAAATTTTAAAAA
386 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* ** *
19776235 ATCTCAAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAC
451 ATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
19776300 TTCACGTAAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCACGTA
516 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
* *
19776365 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGTAT
581 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
19776430 CTCTGGCCGGCGTAGTGCCCACCCGCCCGCCTGCCCGTTTCATCAGTTGGCTTAGGCATACGGAG
646 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCAGTTGGCTTAGGCATACAGAG
* * * *
19776495 ATCATTCTCAGTCTAAGATCGGACCGAACCAATGGTTGCAGCAGCAGGATCGATAGCACGCAGAG
711 TTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCAGGATCGATAGCACGCAGAG
* * * *
19776560 GGGGACCCGACCGATACCCGACTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGTTC
776 GGGGACCCGATCGAT-CCCGGCTTGTGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTC
* *
19776625 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATAAGGAA
840 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAAGGAA
* * * *
19776680 TTCATTCACAGTCTAAGATTGGACC-GAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
1 TTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCAT
* * * *
19776744 ATGCTGGTGCCTA-ATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCATCGAAGAACCTGACC
65 GTGCTGGTGCC-ACATTTTTCTTCGTCGGGGCACCATC-TCGGAG-AT-ACCG-AGAACCTGACC
* * **
19776808 GACGGTATTGGGGTTCCGGCGATCGAGGGGACCGAGCGGGGG-GTGCGCACATGATGTGCGATGG
125 GACGGCATTGGGGTTCCGACGATCG-GGGGGGCG-G-GGGGGTGTGCGCACATGATGTGCGATGG
* *
19776872 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
187 GTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACAACCCC
* *
19776937 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGTCATTAAAGTGTCTGAAATGGGGAC
252 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
19777002 ACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTGTTTATGCATG
317 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * ** *
19777067 CGAAGAAAAATACAAGGATCATGTGTACCAAGTTTGGGGGCAAAACTCCCCCCGAGAAAATTTTA
382 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-
* * * * *
19777132 AAAAAATCCCGAATCAC-CAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTCGCC
446 AAAAAATCTC-AAAC-CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19777196 ATGAAGCTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTG
509 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
19777261 GCATGCAAAAATATGAATATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCAT
574 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * ** * *
19777326 CCCGTCTGTCTGGCCGGCATAGTGCCCGCCCGCTTGCCCGCTTGTTTCATCAGTTGGCTTAGGCA
639 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCAGTTGGCTTAGGCA
* * * * * *
19777391 TACAGAGTTCATTCCCAGTCTAAGATTGGACCGGA-CGAAGGGTTGCGGCAGCAGGATTGGTATC
704 TACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCG-AGGGTTGCAGCAGCAGGATCGATAGC
* * * *
19777455 ACACAGAGGGGGACCAGGTCGATCCCCAGCTTGTGCAT-CCATCCCCTCTGG-TCGGCTGAGCGC
768 ACGCAGAGGGGGACCCGATCGAT-CCCGGCTTGTGCATCCCA-CCCCTCTGGCT-GGCTGAGCGC
* *
19777518 CCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-C----C----C-T---G--
830 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAAGGAA
* *
19777568 -----T--C---C-AAGATCGGACCAGACCGGGGGTTGCAGCAGCACATGCTGGGCT-CGAGCAT
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCG-GCAT
* * *
19777621 GTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCGCCAGAGAA-CTCGACC
65 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-TCGGAG-AT-ACC-GAGAACCT-GACC
* **
19777685 GGCGGCATTGGGGTTCCGACGATCAGGGGGGGC-GGGGGGTGTGCGCACATGATGTGTAATGGGT
125 GACGGCATTGGGGTTCCGACGATC-GGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
19777749 GCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCAC-ACCCCTT
189 GCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACAACCCC-T
* *
19777812 TAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCA
253 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* ** ** *
19777877 CTTTTTTCAAATGGTCACAAAATCTAGTACACTTTAAGTTTTTAGCCAAATTTTTTTATGCATGC
318 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *** * *
19777942 CAACAAACATACAAGTATCGCCAATACCAGGTTTGGGGCCAAAACTCCTTCCGAGAAAATTTTAA
383 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** *
19778007 AAAATCTCAAATTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
448 AAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
19778072 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAATG-AATAAAAATGGCATTGGCA
513 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCA
* * *
19778136 TGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
577 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
19778201 ATCTCTCTGGTCGGCGTAATGCCAGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATAC
642 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCAGTTGGCTTAGGCATAC
* *
19778262 -GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT------GC-GG--C---AGCACG
707 AG-AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCAGGATCGATAGCACG
* * * * * * * * * *
19778314 CAAAGGGGGACGCGACCAATCTCTGGCTTGCGCATCCTACCCCTATGGCCGGCTGAGCGCCCGTA
771 CAGAGGGGGACCCGATCGATC-CCGGCTTGTGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCA
* * *
19778379 TGCTCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACA--AA
835 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATA-AGGAA
* * * *
19778438 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
1 -TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCAT
* * **
19778503 GTACTGGTG-C-C-GTAAT-TT--T--------C-T-TC----A-A-CG-G----T---------
65 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCGGAGATACCGAGAACCTGACCGACGG
* ** *
19778532 -ATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGT
130 CATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
19778596 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTGACACCCCCTTAAAGAG
195 ACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAG
*
19778661 CATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
260 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
19778726 AAAATGGTCACAAACTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGGATACCAACAAA
325 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
** * * * *
19778791 AATGGAAGGATCACGTCTACGAATTTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAAAT-T
390 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* ** * * * *
19778855 CCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGGAACTTC
455 -CAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
19778920 ACGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGAACGTAGAA
519 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
* *
19778984 ATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTC
584 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
19779049 TGGCTGACGTAGTGCCTGCCCGCCCGCCCGGTTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGA
649 TGGCCGGCGTAGTGCCCGCCCGCCCG-CC---TGCTCGTTTCATCAGTTGGCTTAGGCATACAGA
* * ** * * * *
19779114 GTTCATTCCCAGTCTAAGATCAGACC-AGACTGAGGGTTGTGGCAGTAGGATTGGTAGCACACAG
710 GTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCAGCAGCAGGATCGATAGCACGCAG
** * * *
19779178 AGGGGGACCCTTTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGG-TCGGCTGAGCGTCTGCACG
774 AGGGGGACCCGATCGAT-CCCGGCTTGTGCATCCCACCCCTCTGGCT-GGCTGAGCGCCCGCACG
* * * *
19779242 CTCGTTGCGTGGGTTGACTGAGGCATACGGAGTTCATTCCCTA-TCTAAGCATACGGAG
837 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCTAGTCTAAGCATAAGGAA
* * * * * *
19779300 TTCATTCCCAGCCCAAAATCGGACCCGACCG-GGTGTTGCGGTAGCACATGCTGGGCT-CGCCCA
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGG-GTTGCGGCAGCACATGCTGGGCTCCG-GCA
* ** *
19779363 TGTGATGGTGCTGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAGA-ACC--TAACC-G---G-
64 TGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATC-TCGGAGATACCGAGAACCTGACCGA
* * * * *
19779419 CGGCATTGGGGTTCCGATGGTCGGGGGGGCCGGGGGCTGTGTGCACATGATGTGCGATGGGTGCT
127 CGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
19779484 GGTACTTGGCCTTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAA
192 GGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAA
19779549 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
257 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
19779614 TTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATACCAGA
322 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-A
*
19779679 -AAAAATACAAGGATCACG--T--C-----T---------A------CCGAAAAAATTTTTAAAA
386 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * *
19779719 ATC-CTGAACCGAAAAAAGTTTTAAAAATCGTGAAAAAGTAGAAAACGAGTTGTCTTGCCATGAA
451 ATCTC-AAACCGCAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAACGAGTCGTCTTGCCATGAA
* * * *
19779783 ACTTCATGTGAAGGCTTATGGGACCATTGTATGAATTTACACGCCATAAAAATGGCATTGGCATG
514 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* ** * * *
19779848 GAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTTGGCTTGCTCATACCAT
579 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
19779913 CTCTCTGGCCAGCGTAGTGCCCGCCCG--C-CC-ACTCATTTCATCAATTGGCTTAGGCATAC-G
644 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCAGTTGGCTTAGGCATACAG
* * *
19779973 AAGTTCATTCCTAGTCTAAGATCGGATCGAACCGAGGCTTGCAGCAG
709 -AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAG
19780020 AACATGCTGG
Statistics
Matches: 3637, Mismatches: 449, Indels: 334
0.82 0.10 0.08
Matches are distributed among these distances:
840 9 0.00
841 200 0.05
842 265 0.07
843 5 0.00
845 2 0.00
849 65 0.02
850 1 0.00
852 1 0.00
855 3 0.00
856 89 0.02
857 4 0.00
860 4 0.00
861 219 0.06
862 8 0.00
863 1 0.00
864 2 0.00
865 7 0.00
866 2 0.00
867 49 0.01
868 96 0.03
869 129 0.04
872 192 0.05
873 15 0.00
874 204 0.06
875 52 0.01
876 7 0.00
877 116 0.03
878 9 0.00
879 2 0.00
880 1 0.00
881 3 0.00
882 53 0.01
883 3 0.00
888 78 0.02
889 11 0.00
890 2 0.00
891 253 0.07
892 1 0.00
893 1 0.00
894 2 0.00
896 1 0.00
898 2 0.00
899 234 0.06
900 409 0.11
901 270 0.07
902 46 0.01
903 509 0.14
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATG
TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCGGAGATACCGAGAACCTGACCGACGGC
ATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
AAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCAT
TCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCAGGATCGATAGCACGCAGAGGGGGA
CCCGATCGATCCCGGCTTGTGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAAGGAA
Found at i:19779734 original size:27 final size:26
Alignment explanation
Indices: 19779700--19779752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19779690 GATCACGTCT
*
19779700 ACCGAAAAAATTTTTAAAAATCCTGA
1 ACCGAAAAAAGTTTTAAAAATCCTGA
*
19779726 ACCGAAAAAAGTTTTAAAAATCGTGA
1 ACCGAAAAAAGTTTTAAAAATCCTGA
19779752 A
1 A
19779753 AAAGTAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.51, C:0.13, G:0.11, T:0.25
Consensus pattern (26 bp):
ACCGAAAAAAGTTTTAAAAATCCTGA
Found at i:19781772 original size:26 final size:26
Alignment explanation
Indices: 19781743--19781795 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19781733 GTTGACTTAG
* *
19781743 GCATACAGAGTTTATTCCCAATCTAA
1 GCATACAGACTTCATTCCCAATCTAA
*
19781769 GCATACAGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAATCTAA
19781795 G
1 G
19781796 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAATCTAA
Done.