Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 113 of 195
Found at i:19783094 original size:26 final size:26
Alignment explanation
Indices: 19783058--19783110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19783048 GTTGACTTTG
*
19783058 GCATACAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19783084 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19783110 G
1 G
19783111 ATCGAAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19783987 original size:26 final size:26
Alignment explanation
Indices: 19783951--19784003 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19783941 GTTGACTTAG
* *
19783951 GCATACAGAGTTGATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19783977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19784003 G
1 G
19784004 ATCGAAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19784110 original size:893 final size:893
Alignment explanation
Indices: 19782207--19785530 Score: 4584
Period size: 893 Copynumber: 3.7 Consensus size: 893
19782197 GTTGAATTAG
* * * * *
19782207 GCATACGGAGTTCATTCCCAGTCTAACATCGGATTGGACCGAGGGTTGCGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAATGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19782272 CTCGGGCATGTGCTGGTGCCACTTTTTTCTTCATCGGGGCACCATCGTC---G-A------AGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCGGAGAA
* * * * * *
19782327 CCTGACCGACGACATTTGGGTTCCAATGATC--GGGGCCGGGGGTGTGTGC-C-CATGATGTGTG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCG
19782388 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
19782453 GCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATCAAAGTATCCGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19782518 GGACAGTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** * * **
19782583 CATGCCAATATGAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * *
19782648 TTTTAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
455 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
* *
19782713 CATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
19782778 CGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGCA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
19782843 TCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTCG-TCAG-TT-GGCATA
650 TCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTTC-GCTTAGGCATA
* * * *
19782905 CGGAGTTCATTCCCAGTCTAGGATC-GATCTGGGCTGAGGGTTGTGGCAGCAGGATTGGCAGCAC
714 CGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCAC
** * *
19782969 GCAGA-GGGGACCCGACCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCTGC
778 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
* * *
19783033 ACGCTCGTTTCGTGCGTTGACTTTGGCATACAGAGTTGATTCCCAGTCTAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
19783084 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAATGGACCGAGGGTTGCGGCAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAATGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
19783149 CTGGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGCCACCATCGTCAGAGCATCGTCGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CGGAGA
* * * *
19783214 ACCTAACCGACGGCATTGGGGTTTCGGCGATCGGGGGGCCCGGGGGGTTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGG-TGTGCGCACATGATGTG
* * * * *
19783279 TGATGGGTGCTGGTAGTTGGCTCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19783344 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19783409 GGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19783474 TGCGTGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CACTTCTGAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCTGAAAA
19783538 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
* *
19783603 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
19783668 ATTCGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
19783733 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCACCCGTTCGTTTCG-TCGATT-GGCA
647 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTTCGCTTAGGCA
* * *
19783796 TACGGAGTTCATTCCCAGTCTAGGATC-GATCTGGACTGAGGGTTGTGGCAGCAGGATTGGCAGC
712 TACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGC
* * * *
19783860 ACGCAGA-GGGGACCCGGCCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCC
776 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * *
19783924 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTGATTCCTAGTCTAA
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
19783977 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAATGGACCGAGGGTTGCGGCAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAATGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19784042 CTGGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGCCACCATCGTCAGAGCATCGTCGAAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CGGAGA
* * * * *
19784107 ACCTAACCGACGACATTGGGGTTCCGGCGATCGGGGGGCCCGAGGGGTTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCG-GGGGGTGTGCGCACATGATGTG
* * *
19784172 TGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19784237 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19784302 GGGGACACTTTTTTAAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19784367 TGCGTGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CACTTCTGAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCTGAAAA
19784431 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
* * *
19784496 TGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGT
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19784561 ATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCATGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * *
19784626 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCCGCTCATTTCG-TTGGTTGGCTTAGGC
647 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGC-CCGTTCGTTTCGTTCGCTTAGGC
* * * * * *
19784690 ATACGAAGTTCATTCCCAGTCTAAGATTAGACCGAACTGAGGGTTATAGCAGCAGGATCGGTAGC
711 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGC
* * * * * *
19784755 ACGTAGAGGGGGACCCGACTGATCCCCGACTTACGCGTCCCGCCCCTCTGGTCGGCTGAGCACCC
776 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
** * *
19784820 ATATGTTCGTTTCGTGGGTTGACTTAGGCATACCA-AGTTCATTCCCAGTCTAA
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CAGAGTTCATTCCCAGTCTAA
* * ** * *
19784873 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACGGGACCGAAGGTTGTC-GCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAATGGACCGAGGGTTG-CGGCAGCACATGCTGG
* * *
19784937 GCTCGGGCAAGTGCTGGTGCCTCATTTTTCTTCTTCGGGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CGGAG
* *
19785002 AACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGTTCGATGGGGGGTGTGCGCACATGAT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG--C--CGGGGGGTGTGCGCACATGAT
* * *
19785067 GTGCGATTGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
** * * *
19785132 CACACCCCCTTAAAGATTATTTGGGATTTTACAGGTTTGCTACCAGTAGCCATTAAGGTGTCT-A
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
19785196 TAATGGGAACATTTTTTTCAAATGGCCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTT
320 -AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * * *
19785261 TTTTGTGCATGCCAACAAAAATACAAGTATCACGTTTACCATGTTTGGGGCCAAAACTCCTTCCG
383 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
** ** *
19785326 AAAAAATTTTAAAAAATCTCC-AACCATAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGT
448 AAAAAATTTTAAAAAATC-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * * * *
19785390 CGTCTTGCCATGAAACTTAACGTGAAGGCTAAAGCGACCATTCTATGAATTTACAAGCCATAAAA
512 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
19785455 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACGCAACTACCACCCTATCGATCCACAG
577 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
19785520 CTTGCGCATCC
642 CTTGCGCATCC
19785531 TGAACAGCGA
Statistics
Matches: 2235, Mismatches: 178, Indels: 46
0.91 0.07 0.02
Matches are distributed among these distances:
877 103 0.05
880 1 0.00
881 1 0.00
888 27 0.01
890 5 0.00
891 12 0.01
892 3 0.00
893 1330 0.60
894 13 0.01
895 62 0.03
896 239 0.11
897 5 0.00
898 188 0.08
899 243 0.11
900 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAAATGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTTCGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:19784876 original size:26 final size:26
Alignment explanation
Indices: 19784847--19784899 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19784837 GTTGACTTAG
19784847 GCATACCA-AGTTCATTCCCAGTCTAA
1 GCATA-CAGAGTTCATTCCCAGTCTAA
19784873 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19784899 G
1 G
19784900 ATCGGACGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19785730 original size:247 final size:247
Alignment explanation
Indices: 19785294--19785777 Score: 747
Period size: 247 Copynumber: 2.0 Consensus size: 247
19785284 CAAGTATCAC
* * ** * *
19785294 GTTTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCCAACCATAAAAAG
1 GTTTACCAAGTTTCGGGCCAAAAAGCCTTCAGAAAAAATTTTAAAAAATCTCCAACCACAAAAAG
** *
19785359 TTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTAAAG
66 TTTCAAAAATCTTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTAAAG
*
19785424 CGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
131 CGACCACTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
* *
19785489 TAAACGCAACTACCACCCTATCGATCCACAGCTTGCGCATCCTGAACAGCGA
196 TAAACCCAACTACCACCCTATCGATCCACAACTTGCGCATCCTGAACAGCGA
*
19785541 GTTTACCAAGTTTCGGGCCAAAAAGCCTTCAGAAAAAATTTTAAAAAATC-CCGAA-CAGCGAAA
1 GTTTACCAAGTTTCGGGCCAAAAAGCCTTCAGAAAAAATTTTAAAAAATCTCC-AACCA-CAAAA
* *
19785604 AGTTTCAAAAATCTTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCA
64 AGTTTCAAAAATCTTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTAA
* * * * *
19785669 AGGGACCACTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTT
129 AGCGACCACTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTG
*
19785734 CCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCC
194 CCTAAACCCAACTACCACCCTATCGATCCACAACTTGCGCATCC
19785778 CATCTCTTTG
Statistics
Matches: 214, Mismatches: 21, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
246 4 0.02
247 210 0.98
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23
Consensus pattern (247 bp):
GTTTACCAAGTTTCGGGCCAAAAAGCCTTCAGAAAAAATTTTAAAAAATCTCCAACCACAAAAAG
TTTCAAAAATCTTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTAAAG
CGACCACTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
TAAACCCAACTACCACCCTATCGATCCACAACTTGCGCATCCTGAACAGCGA
Found at i:19786030 original size:26 final size:26
Alignment explanation
Indices: 19785993--19786045 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19785983 GTTGACTTAG
**
19785993 GCATACGAAGTTCATTCCTGGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19786019 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19786045 G
1 G
19786046 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19786942 original size:26 final size:26
Alignment explanation
Indices: 19786892--19786943 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19786882 TGACTTAGGC
* *
19786892 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAATATAAGA
19786918 ATACGAAGTTCATTCCCAATATAAGA
1 ATACGAAGTTCATTCCCAATATAAGA
19786944 TCAGATCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATATAAGA
Found at i:19787317 original size:897 final size:899
Alignment explanation
Indices: 19785544--19798537 Score: 15476
Period size: 892 Copynumber: 14.5 Consensus size: 899
19785534 ACAGCGAGTT
* ** * * **
19785544 TACCAAGTTTCGGGCCAAAAAGCCTTCAGAAAAAATTTTAAAAAATCCCGAACAGCGAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * *
19785609 CAAAAATCTTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGA
66 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * *
19785674 CCACTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
** * * *
19785739 ACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCATCTCTTTGGCCG--GTA-TAG-TG
196 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-GCCG
* * *
19785800 CCCGCCCGCCCGCACATTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCA
260 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** * * * *
19785865 GACTGG-ATCAAGGGTTGCGTTAGTAGGATCGGTAGCATGTA-ATGGGGGACCCGACCGATCCCC
325 GACTGGAATGAA-GGTTGTGGCAGCAGGATCGGCAGCACGCAGA-GGGGGACCCGACCGATCCCC
* * * *
19785928 AGCTTGCGCATC-CTGCCCCTCTGGCCAGCTGCGCGCCCGCACGCTTGTTTCGTGGGTTGACTTA
388 GGCTTGCGCATCTC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
** * *
19785992 GGCATACGAAGTTCATTCCTGGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
452 GGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * * *
19786057 TCGAGGGTTACGGCAGCACATGCTGTGCTCAGGCATTTGCTGGTGCCACATTTTTCTTCATCGGG
517 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * * ** * *
19786122 GCACCATAGTCGGAGTATCGTCGGAGAA-CTCGACCGACGGTAATGGGGTTCCGGTGAAC-GAGG
582 GCACCATCGTCGGAGCATCGCCGGAGAACCT-GACCGGCGGCATTGGGGTTCCGACGATCGGGGG
* * * * * *
19786185 GGTC-GGGGGGTGTGCACATATGATGTGTGATGGGTGCTCGTACTTGGCCCTTATATTGGCTCCC
646 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
19786249 TATCCCTCATCAAACCTTGAAAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
711 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
19786314 TGCCAGTAGCTATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
776 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *** *
19786379 ACTTCGAGTTTTTGGCTGAATTTTTTTATGCACAACAACAAAAATACAAGGATCATGTC
841 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
** ** * * * ** **
19786438 TACTGAGTTTAAGGCAAAAACTCCTACCGAAAGAATTTTAAAAAATCTTGAACCAAAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
*
19786503 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGA
66 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
** * *
19786568 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGCTGTGGCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * * *
19786633 ACCCACCAACCAGCCTATCGATCCGCGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAG-GCCGT
196 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCG-
*** ** * * * * *
19786697 TTTGCCCGCCCGCTCGTTTCAACAGTTGGCTTAGGCATGCGAAGTTCATTCCCAGTCTAATAT-T
260 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * ** ***
19786761 GAACTGGAATGAAGGTTGTAGTAACAGGATCAACAGCACGCAGAGGGGGACCCGGTTGATCCCCG
325 G-ACTGGAATGAAGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * * *
19786826 GCTTGCACATCTCGCCCCTCTGGCTGACTGAGCGCCCTCATGCTCGTTCCGTGGGTTGACTTAGG
389 GCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * *
19786891 CATACGAAGTTCATTCCCAGTCTAAGAATACGAAGTTCATTCCCAATATAAGATCAGATCGGACC
454 CATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* ** *
19786956 AAGGGTTGCGGCAGCAGTTGCTGGGCAT-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGG
519 GAGGGTTGCGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * ***
19787020 GACCATCGTCGGAGAATCGCCAGAGAACCTGACTGCCGGCATTGGGGTTCCGATGATCTAAGGGG
583 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
*
19787085 CC-GGGGGGTGTGCGTA-ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
648 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
19787148 TCCCTCATCAAACCTCGAGAACTCCCACCCCCTTAAAGGGCATTTGAGATTTTACGGGTTTGCTG
713 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
19787213 CCAGTAGCTATTAAAGTGTTTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACAC
778 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
19787278 TTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
843 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
19787335 TACCAAGTTTGGGGCCAACACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAATT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTT
** * * * * *
19787399 TTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGACTTAAGCG
65 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
19787464 ACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACGCATAAATATGAAGATGTGCCTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
**
19787529 AACCCACCTACCACCCTATCGATCCACGGC-TG-G-----CG--T-AGT-GCC--C-----GCCT
195 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-
* * *
19787576 GCCCGCCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATC
259 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * * *
19787641 AGAC-CAAACCGAGGGTTGTGGCAGCAAGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCC
324 AGACTGGAA-TGAAGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * * ** *
19787705 GGCTTGCGCATCCCACCCTTTTGGTCGATTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAG
388 GGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * **
19787770 GCATACGGAGTTCATTCCCCGTCTAAGCATACAGAGTTCATTCCCAGTTTAAGATCAGACCAAAC
453 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** * * * ** *
19787835 CGAAGGTTGTAGCAGCACATACTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCACCGGCG
518 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
19787900 CACCATCGTTGGAGCATCGCAGGAGAACCTGACCAGCGGCATTGGGGTT-CGTGCGATCGGGGGG
583 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-ACGATCGGGGGG
** *
19787964 GCCGGGGGGGTTGTGCGCACATGATGTATGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCC
647 GCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
19788029 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGC
711 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
19788094 TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAGGGCCACAAAATCTTGTAC
776 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
19788159 ACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
841 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
** * *
19788218 TACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TT
** * *
19788283 TTGAAAATCATGAAAAAAAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
65 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
19788348 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* *
19788413 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGGCC
195 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-G-C
* * * * * *
19788478 CCCCCACCCGCCCGCTCGTTTCCTCGGTTGGCTTAGGCATATGGAGTTTATTCCCAGTCTAGGAT
258 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
19788543 CAGACTAGACCAAGGGTTGCAGCAGTTTGTAGCAGTAAGATCAGTAGCACGCAGAGGGGGACCTG
323 CAGACT-G--GAA----TG-A--AGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC-C
* * * * *
19788608 GA-CGATCCCTGACTTTCGCATC-CTGCCCCTTTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGT
377 GACCGATCCCCGGCTTGCGCATCTC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * * *
19788671 GTGTTGACTTAGGCATACGAAGTTCTTTCCCAGTCTAAGCAAACAGAGTTCATTCCCAGTCTAAG
441 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
19788736 ATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTT
506 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* ** * *
19788801 TCTTTGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGCGTTCCGG
571 TCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
* * * * *
19788866 CGATCGAGGGGGCCGGGGAGGTGTCCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCATAT
636 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
19788931 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT--CACCCCCTTAAAGAGCATTTGAGATTTT
701 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* ** * * * *
19788994 ACAAGTTT-CTTGCCAGTAGTAATTAAAATGTCTTATATGGGGACAC-TTTTCCAAATGGTCACA
766 ACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
19789057 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
830 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
19789122 ACGTC
895 ACGTC
* ** *
19789127 TACCAACTTTGGGGCCAAAACTTTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** * *
19789192 TGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGA
66 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
19789257 CCATTGTATGAATTTACAAGCCATAAAAATGGCA-T-----GCAGAAATATGAAGATGTGTCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * * * * *
19789316 ACCCACCTACCACCCTACCGATCCACGGCTTGCACATTCTGTCTCTCTAGCCGGCGTAGTGCCTG
196 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-G
* * **
19789381 CCTGTCAGCTCGGCCGCTCGTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
260 CC---C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
19789446 ATC-GAAC-CGAACTGAGGGTTGTGGCAGCAGGATCGGTAGCACACAGAGGGGGACCTGACCGAT
321 ATCAG-ACTGGAA-TGAAGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* * * * *
19789509 CCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGGATGCTCCTTTCGTGGCTTGAC
384 CCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
19789574 TTAGGCATACGGAGTTCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCTAATATCAGACC
449 TTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
19789639 GGACCGAGGGTTACGGTAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
514 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
19789704 GGGGCACCATC-TCCAGAGCATCGCCGGAGAACTTGACAGGCGGCATTGGGGTTCTGGCGATCGG
579 GGGGCACCATCGT-CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* *
19789768 GGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCC
643 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
19789833 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
708 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
19789898 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
773 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
19789963 TACACCTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTA
838 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * *
19790025 TACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTTAAAAATCCTGAACTGTAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * *
19790090 TAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
66 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
** * * *
19790155 CCATTGTATGAATTTACAAGTGAGAAAAATGGCTTTGGCACACAGAAATATGAAGATGTGCCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * * * *
19790220 ACCCACCTACCACCCTATCGATCGACGACTTGCGCATCCTGTCTCTTTGGCCGGCGTAGT-----
196 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGC
** * * * * *
19790280 --GCCAACCTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAATTCATTCCCAATCTAAGATCAG
261 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * ** * * * * * * *
19790343 ACCGGACTG-AGGCTTACGACAGTAGGATTGACACCACACAGCA-GGGGACCCAACCGATCCCCG
326 ACTGGAATGAAGG-TTGTGGCAGCAGGATCGGCAGCACGCAG-AGGGGGACCCGACCGATCCCCG
* * * * *
19790406 GCTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCGCTCGCACACTCGTTTTGTGGGTTGACTTAGA
389 GCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * *
19790471 CATAC-AGAGTTCATTTCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
454 CATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
** * * * * * * **
19790535 CGAGGGTTGTAGCAACACGTACTGGGCTTGGGCATGTGCTGGTGCGGTATTTTTCTTCACCGGGG
518 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** * *
19790600 CACCATCGCCAGAGCATCATCGGAGAACCTGACCGGCGGTATTGGGGTTCCTACGATCGGGGGGG
583 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * * *
19790665 CCGGGGGGGTTTGCGCACATGACGTGCAATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTA
648 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
19790730 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
713 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
19790795 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACAC
778 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
19790860 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
843 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
19790917 TACAAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
*
19790982 CAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
66 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
19791047 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * * *
19791112 ACCCACCTACCACCCTATCAATCCACGGCTTGTGCATCTCGTCTCTCTGGCC-AGCGAAGTGCCC
196 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGT----
* * * * *
19791176 GCCTGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGAATACGAAGTTCATTCCCAGTATAA
256 GCC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
19791241 GATCGGA-T-CAGATCGAAGGTTGTGGCAGCAAGATCGGCAACATGTAGAGAGGGACCCGATCGA
320 GATCAGACTGGA-AT-GAAGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
** * ** * *
19791304 TCCCCGGCTTGAACATCCCATCCCTCTGGCCGGCTGAACGCCCGTACGCTCGTTTCGTGGGTTGA
383 TCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * ** * *
19791369 CATACGCATATGGGGTTCATTACCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
448 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
19791434 TGGATCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGT
513 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * ** * *
19791499 CGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGGTTGCTTTGGGGTTCCAACGATCGG
578 CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* * * *
19791564 GAGGGCCGGGGGGGTCTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATT-GCC
643 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
19791628 TCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
708 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * * * * * *
19791693 TGCTACCAATAGCCATTAAAGTGTTTGGAATGGGGACATTTTTTTAAAATTGTCCCAAAATCTTG
773 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
19791758 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTC
838 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* ** * *
19791820 TACGAAGTTTGGGGCCAAAACTCCTTTTGAAAGAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TT
* ** * * * *
19791885 TGAAAAATTGTGAAAAATAGAAAATGAGTCATCTGGCCATGAAACTTCACATGAAGGCTTAAGGG
65 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
19791950 ACCATTGTATGAATTTACAAGCTATAAAAATGGCAGTGGCAGGCAGAAATATGAAAATGTGCCTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * * *
19792015 AACCCACCTACCGCCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGT---G
195 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCG
* * * *
19792077 CCCGCCCGCCAGCTCATTTCGTCGGTTGGCTTAGGCATAGGGAGGTCATTCCCAGTCTAAGATCA
260 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
** ** * ** * * * *
19792142 GACCAGACCGAGGGTTCCGGCAGCCA-GATTGGCAGCATGTAGAGGGGGACCCGATCGATCCCCG
325 GACTGGAATGAAGGTTGTGGCAG-CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * ** * * * * *
19792206 ACTTGCGCATCCCACTGCTCTGGCCAGTTGAGCACCCGCACGCTCGTTTCATGGGTTCACTTAGG
389 GCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
19792271 CATACGGAGTTCGTTCCCAG--T---C-TA---AG---------A-TC--AGATCGG--C--A--
454 CATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* *
19792309 GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGC
519 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * **
19792374 ACCATCG-CTGGAGCATCACCGGAGCACTTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGG
584 ACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
*
19792438 CCGGGGAGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
648 CCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
19792503 ATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
712 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* ** * *
19792568 GCCAGTAGCTATTAAAGTGTCCAAAATGGGGACACCTTTTTCATATGGTCACAAAATCTTGTACA
777 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* ** *
19792633 CTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGTGAAAAAAAATACAAGGATCACGTC
842 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * **
19792691 TACCAAGTTTAGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* *
19792756 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
66 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
19792821 CCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* ** * * * *
19792886 ACCCACCTACCGCCCTATCGATCTTCAGCTTGCGTAT-CCGTCTCTCCGGTCGACGTAGTGCCAG
196 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-G
*
19792950 CCCGCCCGCCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
260 CCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * * * * * * *
19793015 ATCGGACCAGACTGAGGGTTTTGGTAGCAAGATCGGTAGCATGCAAAGGGGGACCCGACCGATCC
321 ATCAGACTGGAATGAAGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
** * * * * *
19793080 CCGGCTTGCGCAT-TCCGCCCCTCTGGCCGATTGAGTGCCTGCACGCTCATTGCATGGGTTGACT
386 CCGGCTTGCGCATCT-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * **
19793144 TAGGCAGACAAAGTTCATTCCCAGTCTAAGCATACAGAGTTTATTCCCATTCTAAGATCGGATAG
450 TAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * *
19793209 GATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCG
515 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
19793274 AGGCACCA---T-----CAT---CGGAGAACTTGATCGGCGGCATTGGGGTTCCGATGATCGAGG
580 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * * *
19793328 GGGCCAGGGGGTGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCTTTATATTAGCCC
645 GGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
19793393 CCTATCCCTCATCAAACCTTGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTT
709 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
19793458 GCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
774 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * ** *
19793523 ACACTTCGACTTTTTAGCTTAATTTTTTTGTGCATACCAGTAAAAATACAAGGATCACATC
839 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
19793584 TA--ATAGTTTGGGGCCAAAACTCCTT-CAAAGAAAATTATAAAAAATCCCAAACCGCAAAAAGT
1 TACCA-AGTTTGGGGCCAAAACTCCTTCCGAA-AAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * *
19793646 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGGAGGCTTAAGG
64 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
**
19793711 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
129 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
* * * * * *
19793776 AAACCCACCTACTACCCTATCGATCAACCGCTTGCGCCTCCCGTCTCTCTGGCCGGCGCAGTGCC
194 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C
* * *
19793841 CGCCTGCCCGCTTGCCTGCCTACTCGTTTTGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAG
258 CGCCCGCCCGC---CC-G----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * * * * * *
19793906 TCTAAGATCAGACTGG-ACCAAGGGTTGCGGTAGCAGGATCGGTAGCATGTAAAGGGGGACCCGA
315 TCTAAGATCAGACTGGAATGAA-GGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
* ** * * *
19793970 CCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGTTGGCTCAGCGCCCGTACGCTCGTTTTGTGGG
379 CCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
19794035 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATC
444 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* *
19794100 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCT
509 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * * * * *
19794165 TCACCGGGGCATCATCG-CTGGAGCATCTCCGGAGAACCTAACTGTCAGCATTGGGGTTCCGACG
574 TCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * *
19794229 ATCGGGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTATTTGGCCCTTATAT
638 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
19794293 TGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
703 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
19794358 AGGTTTGCTACCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAA
768 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
19794423 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGACAAC-AAAATACAAGGATCACG
833 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
19794487 TC
898 TC
** * * *
19794489 TACCACA-TTTGGGGGTAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAGAAAGTT
1 TACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* *
19794553 TCAAAAATCATGAAAAATAGAAAACGAGTCATATTGCCATGAAACTTCACGTGAAGGCTTAAGGG
65 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* **
19794618 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGCACCTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * * * * * *
19794683 AACCCACATACCACCTTATCGATCTACGACTCGCGCATCCTGTCTCTCTGGCCAACGTAATGCCC
195 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC
* * * * * ** *
19794748 GCCCGGCCGTCCTCTCGTTTCGTCTGCTGGCTTAGGCATACGGAGTTCATTCCTGGTCTAAGATT
259 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
19794813 GGA-TCGGATTGAGGGTTGTGGTAGTAGGATCAGCAGCACACAGAGGAGGACCCGACCGATCCCC
324 AGACT-GGAATGAAGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * *
19794877 GGCTTGCACATCCCGCCCTTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTCACTTAG
388 GGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * **
19794942 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGATCGGACCAAAC
453 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** * * ** *
19795007 CGAGGGTTGCGGCAGCACATGCCGGGCTCAAGCATTTGCTGGTGCCACATTTTTCTTCACCGGTG
518 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
19795072 CACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGCGTTCCGGCGATC-GGGGGG
583 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * *
19795136 CCGAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTA
648 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
19795201 TCCCTGATCAAACCTCGAAAACCCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
713 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
19795266 CCAGTAGCCATTAAAGTGTTTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
778 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
19795331 TTCGAATTGTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATGCAAGGATCACGTC
843 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
19795387 TACCAAGTTTGGGGCAAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * *
19795452 CAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCAATAAAACTTCACGTGAAGGCTTAAGGGA
66 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
19795517 CCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATAAAGATGTGCCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* *
19795582 ACCCACCTACCACCCTATCAATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
196 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCG
* * * **
19795647 CCCGCCTGCACGCCCGCTTGTTTCGTCGGATGG-TTAGGCATTCATAGTTCATTCCTC-GTCTAA
260 CCCG-C--C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-CAGTCTAA
** * ** * * * * * * * *
19795710 GATTGGA-TCAGACCG-AGTGATGCGACAGCAAGATTGGCAGCACACAGAGGGGGGCCTGACCGA
320 GATCAGACT-GGAATGAAG-GTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * * * * *
19795773 TCCCCGACTTGCTCATCCCACCCCTCTGGTCGGCTGAGCACCCGCACGATCGTGTCGTGGGTTGA
383 TCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * *
19795838 CTTAGGCATAC-AGAGTTCATAT-CCAGCCTAAGCGTACGGAGTTCAGTCCCAGTCTAAGATCGG
448 CTTAGGCATACGA-AGTTCAT-TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * *
19795901 ACTGGACCGAGGGTTACGGCGGCACCTGCTGGGCTCGGGCATTTGCTGGTGCCACATTTTTCTTC
511 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
19795966 GTCGGGGCACCA---T-----CA---CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
576 GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
*** * *
19796020 AAAGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATACTGG
641 GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * *
19796085 CCCCCTATCCCTCTTTAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAG
706 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* ** * *
19796150 TTTGTTGCCAGTAGCCATCGAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATGT
771 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * *
19796215 TGTACACATCGAATTTGTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATC
836 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * * * **
19796279 TACGAAGTTTGTGGCCAAAACACCATCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** ** * * * *
19796344 TGAAAATTGTGAAAAATAGAAAATGAGTCGTGTTGCCATGAAACTTGACGTGAAGGCTTAAAAGG
66 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGG
*
19796409 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * *
19796474 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCT
195 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--T
* *
19796539 GTCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAA
256 G-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * ** * * * * * *
19796604 GATCAGACCAGACCGAGGGTTACGGCAGTAGGACCGACAGCACACAGAGGGGTACCCGATCGATC
320 GATCAGACTGGAATGAAGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * * *
19796669 CCCGACTTGTGCATC-CTGCCCCTCTGGCCGGCTAAGCACCCGCACACTCGTTTCGTGGGTTGAC
385 CCCGGCTTGCGCATCTC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
** * * * * *
19796733 TTAGGTGTACGGAGTTCATTCCCAGTATAAGCATACAGAGTTCATTCCCAGGCTAAGATTGGACC
449 TTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * *
19796798 GGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTT
514 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * *
19796863 GGGGCACCATCGTCGGAGCATCG-CGTGAGAACCTGACCGGCGGCATTAGGGTTCCGACAATC-A
579 GGGGCACCATCGTCGGAGCATCGCCG-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* ** *
19796926 GGGGGCCTGGGGGGTGTAAGCACATGATGTG-GATGGGTGCTGGTACTTGG-CGTTATATTGGCC
643 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * * * *
19796989 CCTTATGCCTCATCATACCTCAAGAACTCACATCCCCTTAAAGAGCCTTTGAGATTTTACAGGTT
708 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
19797054 TGCTGCAAGTAGCCATTAAAGTATCTAAAATGGGGACATTTTTTTTCAAATAGG-CACAAAATCT
773 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAAT-GGTCACAAAATCT
* * * *
19797118 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATTCAAACAAAAATACAAGGATCAGGTC
836 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
19797182 TAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * *
19797247 GAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
66 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
19797312 CCATTGTATAAATTTACAAGCCA-AAGAAATGGCATTGGCACGCAGAAATATGAGGATGTGCCTA
131 CCATTGTATGAATTTACAAGCCATAA-AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * *
19797376 AACCCACCTACCACACTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCC
195 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG---
* * * *
19797441 TCCCGCCCGCTCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
257 --CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * * * *
19797506 GATCAGACCGGAGCG-AGTGTTATAGTAGCAGGATCGACAGCACGCAGAGGGAGACCTGACTGAT
320 GATCAGACTGGAATGAAG-GTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* * * *
19797570 CCCCAGCTTGCGCATCTCGCCTCTCTGGCCGGCTGAGC-CACCACACGCTCATTTCGTGGGTTGA
384 CCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGC-CCGCACGCTCGTTTCGTGGGTTGA
*
19797634 CTTAGGCATACGAAGTTCGTTCCCAG-C---G--TA---AG---A-T--C-G-----GAT-----
448 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * **
19797673 CGGACCGAGGGTTACGGTAGCACATGCT-GGCTCGGGCATGTGCTGGTGCAACATTTTTCTTCGT
513 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * *
19797737 CGGGGCACCATCGTCGGAGCATC-CCGGGAGAACCTGACCGACGGCATTAGGGTTCCGTCGAT-A
578 CGGGGCACCATCGTCGGAGCATCGCC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* ** *
19797800 AGGGGG-CTAGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
642 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
19797864 CCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
707 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
19797929 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAATGGTCACAAAATCT
772 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCT
* *
19797994 TGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATGCCAACAAAAATACAAGAATCACGTC
836 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
** *
19798058 TACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCC-AACCGCAAAAAGTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CCGAACCGTAAAAAGTT
** * * *
19798122 TCAAAAATCATGAAAAATAGACTATGAGCCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
65 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
19798187 ACCATTGCATGAATTCACAAGCCATAAAAATGGCATTGGCACGTAGAAATAAGAAGATGTGCCTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* *
19798252 AACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTCGACGTAGTGCCC
195 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC
* ** *
19798317 GCCTACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAAAGAGTTCATTCCC-GTCTAT
259 G----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * ** * * *
19798381 GATCGGACCGGACCGAGGGTTATGGCTGCAGGATCGATATCACACAGAGAGGGACCCGACCGATC
320 GATCAGACTGGAATGAAGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * * * * * * *
19798446 CCCGGCTTGTGCATCCCACCCCTCTAGCCGGTTGAGCACCCGTATGCTCATTTCGTGGGTTGACT
385 CCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
19798511 TAGGCATAC-AGAGTTCATTCCCAGTCT
450 TAGGCATACGA-AGTTCATTCCCAGTCT
19798538 GAAATTGGCC
Statistics
Matches: 10443, Mismatches: 1414, Indels: 503
0.84 0.11 0.04
Matches are distributed among these distances:
868 1 0.00
869 137 0.01
870 200 0.02
871 232 0.02
872 4 0.00
873 9 0.00
874 22 0.00
875 259 0.02
876 487 0.05
877 173 0.02
878 1 0.00
879 6 0.00
880 307 0.03
881 11 0.00
882 8 0.00
883 275 0.03
884 152 0.01
885 2 0.00
886 6 0.00
887 4 0.00
888 1 0.00
889 1 0.00
890 42 0.00
891 222 0.02
892 1107 0.11
893 448 0.04
894 464 0.04
895 357 0.03
896 187 0.02
897 1064 0.10
898 1043 0.10
899 3 0.00
900 4 0.00
901 258 0.02
902 491 0.05
903 503 0.05
904 702 0.07
905 114 0.01
906 439 0.04
907 10 0.00
908 135 0.01
909 139 0.01
910 65 0.01
911 1 0.00
912 75 0.01
913 268 0.03
914 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGC
CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACTGGAATGAAGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
TTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
CATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
Found at i:19787822 original size:26 final size:26
Alignment explanation
Indices: 19787770--19787822 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19787760 GTTGACTTAG
* *
19787770 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19787796 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19787822 G
1 G
19787823 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19791412 original size:26 final size:26
Alignment explanation
Indices: 19791374--19791426 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19791364 GTTGACATAC
*
19791374 GCATATGGGGTTCATTACCAGTCTAA
1 GCATATGGAGTTCATTACCAGTCTAA
*
19791400 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTACCAGTCTAA
19791426 G
1 G
19791427 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTACCAGTCTAA
Found at i:19794978 original size:26 final size:26
Alignment explanation
Indices: 19794942--19794994 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19794932 GTTCACTTAG
19794942 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19794968 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19794994 G
1 G
19794995 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19795239 original size:898 final size:897
Alignment explanation
Indices: 19792270--19798537 Score: 7781
Period size: 898 Copynumber: 7.0 Consensus size: 897
19792260 GTTCACTTAG
* * * * *
19792270 GCATACGGAGTTCGTTCCCAGTCTAAGATCAGATCGG-CAGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19792334 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATC-GCTGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATC-GGAGCATC-CCGGAG
* * * ** * *
19792398 CACTTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGAGGGTGGGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGAGG-GGGTGTGCGCACATGATG
19792463 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * **
19792528 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCCAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
19792593 ATGGGGACACCTTTTTCATATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
19792658 TGTGCATGTGA-AAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTTCGAA
387 TGTGCA--TGACAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * *
19792722 AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
* *
19792787 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** *
19792852 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCTTCAGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
19792917 GCGTAT-CCGTCTCTCCGGTCGACGTAGTGCCAGCCCGCCCGCCCGCTCGCTCGTTTCGTCAGTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGGCCGCCCGCTCGTTTCGTCGGTT
* * * * *
19792981 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTTTGGTAGCAAG
706 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGG
* ** * * **
19793046 ATCGGTAGCATGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGAT
771 ATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
** * * * * * **
19793111 TGAGTGCCTGCACGCTCATTGCATGGGTTGACTTAGGCAGACAAAGTTCATTCCCAGTCTAA
836 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
19793173 GCATACAGAGTTTATTCCCATTCTAAGATCGGATAGGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
19793238 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGCA-C--CAT-----CAT--CGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCCCGGAGAA
* * *
19793293 CTTGATCGGCGGCATTGGGGTTCCGATGATCGAGGGGGCC-AGGGGGTGTGTGCGCACATGATGT
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGA-GGGG-GTGTGCGCACATGATGT
* * * *
19793357 GTGATGGGTGCTGGTACTTGGCCTTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19793422 CACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19793487 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTTAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19793552 GTGCAT-ACCAGTAAAAATACAAGGATCACATCTA--ATAGTTTGGGGCCAAAACTCCTT-CAAA
388 GTGCATGA-CA-AAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAA
* * *
19793613 GAAAATTATAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
450 -AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
* *
19793678 TGTTGCCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
19793743 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCAACCGCT
579 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** *
19793808 TGCGCCTCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCTGCCCGCTTGCCTGCCTACTCGTTTTGT
644 TGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCG---GCC-GCCCGCTCGTTTCGT
* * * * * **
19793873 CGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGTA
701 CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTATGGTA
* *** * * *
19793938 GCAGGATCGGTAGCATGTAAAGGGGGACCCGACCGATCCCCGGCTTGTGCATCTCGCCCCTCTGG
766 GCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
** * * * *
19794003 TTGGCTCAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
831 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
19794068 AA
896 AA
* *
19794070 GCGTATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
19794135 CTTGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCATCATC-GCTGGAGCATCTCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATC-GGAGCATC-CCGGAG
* * * * *
19794199 AACCTAACTGTCAGCATTGGGGTTCCGACGATCGGGGGGGCTG-GGGGGTGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGAGGGGGTGTGCGCACATGATGT
* * *
19794263 GCGATAGGTGCTGGTATTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19794328 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGGAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19794393 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
19794458 GTGCGTGACAACAAAATACAAGGATCACGTCTACCACA-TTTGGGGGTAAAACTCCTTCCAAAAA
388 GTGCATGACAAAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
19794522 AATTTTAAAAAATCCCAAACCGTAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATAT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
19794587 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * * * * *
19794652 ATTGGCACACAGAAATATGAAGATGCACCTAAACCCACATACCACCTTATCGATCTACGACTCGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
19794717 GCATCCTGTCTCTCTGGCCAACGTAATGCCCGCCCGGCCGTCCTCTCGTTTCGTCTGCTGGCTTA
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** * * *
19794782 GGCATACGGAGTTCATTCCTGGTCTAAGATTGGATCGGATTGAGGGTTGTGGTAGTAGGATCAGC
712 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGGC
* * *
19794847 AGCACACAGAGGAGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCTTCTGGCCGGCTGAGCA
777 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
*
19794912 CCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
19794968 GCATACGGAGTTGATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * ** *
19795033 CTCAAGCATTTGCTGGTGCCACATTTTTCTTCACCGGTGCACCATCATCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATC-CCGGAGA
* *
19795098 ACCTGACCGGCGGCATTGGCGTTCCGGCGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
* * * * * *
19795163 AATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTGATCAAACCTCGAAAACCCAAA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
19795228 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19795293 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTGTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
19795358 GCATGCCAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCTTTCTGAAAAAAT
390 GCATGACAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
19795423 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
455 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
* * *
19795488 AATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
19795553 GGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCAAGGCTTGCGCA
585 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
19795618 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCACGCCCGCTTGTTTCGTCGGATGG-TT
650 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG---GC-CGCCCGCTCGTTTCGTCGGTTGGCTT
* ** * * * * * * * *
19795682 AGGCATTCATAGTTCATTCCTCGTCTAAGATTGGATCAGACCGA--GTGATGCGACAGCAAGATT
711 AGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTATG-G-TAGCAGGATC
* * * * * *
19795745 GGCAGCACACAGAGGGGGGCCTGACCGATCCCCGACTTGCTCATCCCACCCCTCTGGTCGGCTGA
774 GGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
19795810 GCACCCGCACGATCGTGTCGTGGGTTGACTTAGGCATACAGAGTTCATAT-CCAGCCTAA
839 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCCAGTCTAA
* * * * * *
19795869 GCGTACGGAGTTCAGTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCGGCACCTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
19795934 CTCGGGCATTTGCTGGTGCCACATTTTTCTTCGTCGGGGCA-C--CAT-----CA--CCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCCCGGAGAA
** * *
19795989 CCTGACCGGCGGCATTGGGGTTCCGACGATCAAAGGGGCCGGGGGGGTGTGCGCACATGATGTGT
131 CCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
* * * *
19796054 GATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCTTTAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * **
19796119 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATCGAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
19796184 GGGACATTTTTTTCAAATGGTCACAAAATGTTGTACACATCGAATTTGTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * *
19796249 GCATGCCAAAAAAAATACAAGGATCACATCTACGAAGTTTGTGGCCAAAACACCATCCAAAAAAA
390 GCATGAC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** * * * *
19796314 TTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTGTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
* *
19796379 CCATGAAACTTGACGTGAAGGCTTAAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 CCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
19796444 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
19796509 CATCCCGTCTCTCTGGCTGGCATAGTGCCTGTCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGACGTAGTG-C---CCGCCCGGCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
19796574 TTAGGCATACGGAGTTCATT-CTCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGAC
709 TTAGGCATACGGAGTTCATTCCT-AGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGAT
* * * * * * *
19796638 CGACAGCACACAGAGGGGTACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTA
773 CGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* ** *
19796703 AGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGTGTACGGAGTTCATTCCCAGTATAA
838 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19796763 GCATACAGAGTTCATTCCCAGGCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19796828 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGCGTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCCCG-GAGA
* * * **
19796893 ACCTGACCGGCGGCATTAGGGTTCCGACAATCAGGGGGCCTG-GGGGGTGTAAGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GAGGGGGTGTGCGCACATGATGTG
* * * * *
19796957 -GATGGGTGCTGGTACTTGG-CGTTATATTGGCCCCTTATGCCTCATCATACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
19797020 ATCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTATCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19797085 GGGGACATTTTTTTTCAAATAGG-CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 GGGGACA-CTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
19797149 TATGCAT-TCAAACAAAAATACAAGGATCAGGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TGTGCATGAC-AA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
19797213 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCAT
450 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
* *
19797278 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCA-AAGAAAT
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA-AAAT
* * *
19797342 GGCATTGGCACGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACACTATCGATCCATGGCT
579 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
19797407 TGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCTCCCGCCCGCTCGCCCGCTCATTTCATCGGT
644 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG---GC-CGCCCGCTCGTTTCGTCGGT
* * * *
19797472 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGAGCGAGTGTTATAGTAGCAG
705 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAG
* * * * * * * *
19797537 GATCGACAGCACGCAGAGGGAGACCTGACTGATCCCCAGCTTGCGCATCTCGCCTCTCTGGCCGG
770 GATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
19797602 CTGAGC-CACCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCGTTCCCAG-C---
835 CTGAGCAC-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19797661 G--TA---AG---A-T--C-G-----GAT-----CGGACCGAGGGTTACGGTAGCACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** *
19797703 CTCGGGCATGTGCTGGTGCAACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCCGGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCCC-GGAGA
* * * ** * *
19797768 ACCTGACCGACGGCATTAGGGTTCCGTCGATAAGGGGG-CTAGGGGGTGTGCGCACGTGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
*
19797832 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
19797897 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19797962 GGGACACTTTTTTCAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTG
325 GGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
19798027 TGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAA
389 TGCATGACAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
19798092 ATTTTAAAAAATCTCC-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGACTATGAGCCATCT
453 ATTTTAAAAAATC-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
* *
19798156 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTCACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
19798221 ATTGGCACGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19798286 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTACCCGCCCGCCCGCTCGTTTCATCGGTTGG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGGCCGCCCGCTCGTTTCGTCGGTTGG
** * *
19798351 CTTAGGCATAAAGAGTTCATTCC-CGTCTATGATCGGACCGGACCGAGGGTTATGGCT-GCAGGA
708 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTATGG-TAGCAGGA
** * * * * * *
19798414 TCGATATCACACAGAGAGGGACCCGACCGATCCCCGGCTTGTGCATCCCACCCCTCTAGCCGGTT
772 TCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
19798479 GAGCACCCGTATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
837 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
19798538 GAAATTGGCC
Statistics
Matches: 4664, Mismatches: 603, Indels: 222
0.85 0.11 0.04
Matches are distributed among these distances:
874 20 0.00
875 253 0.05
876 481 0.10
877 5 0.00
880 4 0.00
881 3 0.00
886 1 0.00
887 1 0.00
889 2 0.00
890 39 0.01
891 216 0.05
892 334 0.07
893 437 0.09
894 239 0.05
895 2 0.00
896 11 0.00
897 289 0.06
898 788 0.17
899 8 0.00
900 3 0.00
901 252 0.05
902 418 0.09
903 234 0.05
904 92 0.02
905 58 0.01
906 425 0.09
907 11 0.00
908 37 0.01
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGACAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGCAGGATCGGCAGCA
CACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19801054 original size:26 final size:26
Alignment explanation
Indices: 19801025--19801077 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19801015 TTTAACTTAG
*
19801025 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19801051 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19801077 G
1 G
19801078 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19801230 original size:907 final size:905
Alignment explanation
Indices: 19799383--19801848 Score: 3329
Period size: 907 Copynumber: 2.7 Consensus size: 905
19799373 GACTGATGGA
* *
19799383 ATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
1 ATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
19799448 CTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * *
19799513 ATTTGAGATTTTACAAGATTGCTGCCAGTAGCCATTAAAGTG-TCAGGAATGGGGACACTTTTTT
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTA-AAATTGGGACACTTTTTT
* *
19799577 CAAATGGTCACAAAATATTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
195 CAAATGGCCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * *
19799642 AACTACAAGGATCATGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
260 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATC
* * *
19799707 CCGAACCCCAAAAAGTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
325 CCGAACCACAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
19799772 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
389 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
**** *
19799837 AATATGAAGATGCAAATAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCCGTCTCT
454 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
19799902 CTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGG
519 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAAGCATACAG
* ** * *
19799967 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATTTACTGCACGTAG
584 AGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * * * * *
19800032 AGAGGGACCCGACCGATCCTCGGCTTACGTATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGT
649 AGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCAGGCTGAGCACCCACACAT
*
19800097 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCC
714 TCATTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCC
** * * ** *
19800162 CAGTCTAAGATCGAACCGGACCGCGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
779 CAGTCTAAGATCGAACCGGACCAAGGGCTACGACAGCACATGCCAGGCTCAGGCATGTGCTGGTG
* *** * * * *
19800227 CCCGTATTTTTCTTTGTCGGGGAACCATCATCAAATCATCACGGGAGAACTTAACCGACGGC
844 CCCGCATTTTTCTTCACCGGGGAACCATCATCAAAGCAGCACCGGAGAACTTAACCGACAGC
* * * *
19800289 ATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTTTGCGCACATGATGTGCGATGGGTGCTGA
1 ATTAGGGTTCCGACGATCGGGGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
19800354 TACTTGGGCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGA
64 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
19800419 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATTGGGACACTTTTT
129 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATTGGGACACTTTTT
* * *
19800484 TCAAATGCCCACAAAATCTTGCACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
194 TCAAATGGCCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAA
* * * ***
19800549 AAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAAT-ATTTTTAAAGAAATTTTAAAAA
258 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAA-AAATTTTAAAAA
*
19800613 ATCCCGAACCACAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCATC-TGCCATGAAAC
322 ATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* *
19800677 TTCACATGAAGCCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCA
387 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * *
19800742 GAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
452 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * *
19800807 CTCTGGCCGGCATAGTGCCTGCCCGCCCGTCTGCCCACTTATTTCGTCGGTTGGCTTAAGCATAC
517 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAAGCATAC
** ** * * * *
19800872 AGAGTTCATTCGTAATCTAAGATTGGATCAGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGC
582 AGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * *
19800937 AGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCACCTATAC
647 AGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCAGGCTGAGCACCCACAC
* * * * * *
19801002 ATTCGTTTCGTGGTTTAACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATT
712 ATTCATTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCACACGGAGTTCATT
**
19801067 CCCAGTCTAAGATCGAACCGGACCAAGGGCTGTGACAGCACATGCCAGGCTCAGGCATGTGCTGG
777 CCCAGTCTAAGATCGAACCGGACCAAGGGCTACGACAGCACATGCCAGGCTCAGGCATGTGCTGG
** ** ** * *
19801132 TG-CCGCATTTTTCTTCACCGGGTCACCATTGTCGGAGCAGCGCCGGAGAACTTGACCGACAGC
842 TGCCCGCATTTTTCTTCACCGGGGAACCATCATCAAAGCAGCACCGGAGAACTTAACCGACAGC
* * *
19801195 ATTAGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAAGTGCAATGGGTGCTGGT
1 ATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
19801260 TCTTGGCCCTTATAGTGGCCCCCTATTCCTAATCAAACCTCTAGAACTCACACCCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
19801325 CATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATTGGGACACTTTTTT
* *
19801390 CAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAA
195 CAAATGGCCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * * * *
19801454 AAAGACAAGGATCGTGTCTACCAAGTTTTGCGCCAAAACTCCA-TCCGAAAAAATTTTTAAAAAT
260 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT-CATTCCGAAAAAATTTTAAAAAAT
* * * * *
19801518 CCTGAACCGCAAAAAGTTTCAAAAATGGTGAAAAAGAGAAAACGAGTCATCTTGCCATGAAACTT
324 CCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* * ***
19801583 CACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAA
389 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
* * *
19801648 AATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGTGCAACCCGTCTCT
454 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
19801713 CTGGCCGACGTAGTGCCCGCCCGCCCGCTCG----CTCGTTTCGTCAGTTGGCTTAGGCTTA-AG
519 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAAGCATACA-
* * * * * * * *
19801773 GAGTTCATTCCCAGTTTATGATCAGACCGGACGGAA-GGTTGCGGTAGCAAGATC-AGTAGCACG
583 GAGTTCATTCCCAATCTAAGATCAGACCAGAC-CAAGGGTTGCGGCAGCAGGATCGA-CAGCACG
*
19801836 CAGAGGGGGACCC
646 CAGAGAGGGACCC
19801849 AGTTGATCCC
Statistics
Matches: 1359, Mismatches: 190, Indels: 28
0.86 0.12 0.02
Matches are distributed among these distances:
899 2 0.00
900 79 0.06
901 1 0.00
903 96 0.07
904 159 0.12
905 203 0.15
906 98 0.07
907 411 0.30
908 234 0.17
909 76 0.06
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (905 bp):
ATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATTGGGACACTTTTTTC
AAATGGCCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCC
CGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAAGCATACAGAG
TTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
AGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCAGGCTGAGCACCCACACATTC
ATTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCCCA
GTCTAAGATCGAACCGGACCAAGGGCTACGACAGCACATGCCAGGCTCAGGCATGTGCTGGTGCC
CGCATTTTTCTTCACCGGGGAACCATCATCAAAGCAGCACCGGAGAACTTAACCGACAGC
Found at i:19804467 original size:26 final size:26
Alignment explanation
Indices: 19804415--19804467 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19804405 GTTGACTTAG
* *
19804415 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
19804441 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
19804467 G
1 G
19804468 ATCGGATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:19805304 original size:26 final size:26
Alignment explanation
Indices: 19805275--19805327 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19805265 CTTGACTTAG
*
19805275 GCATACGA-AGTTCATTCCTAGACTAA
1 GCATA-GAGAGTTCATTCCCAGACTAA
* *
19805301 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATTCCCAGACTAA
19805327 G
1 G
19805328 ACCGGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAGAGAGTTCATTCCCAGACTAA
Found at i:19806183 original size:25 final size:26
Alignment explanation
Indices: 19806155--19806204 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
19806145 TGACTTAGGC
*
19806155 ATACGGAGTTCATT-CCAGTATAAGT
1 ATACAGAGTTCATTCCCAGTATAAGT
*
19806180 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTATAAG
19806205 ATCGAAGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTATAAGT
Found at i:19807183 original size:19 final size:19
Alignment explanation
Indices: 19807147--19807183 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
19807137 AATCCCGAAC
* *
19807147 CGTAAAAAGTTTTGAAAAT
1 CGTAAAAAATTTTAAAAAT
19807166 CGTAAAAAATTTTAAAAA
1 CGTAAAAAATTTTAAAAA
19807184 ATTCCTAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.05, G:0.11, T:0.30
Consensus pattern (19 bp):
CGTAAAAAATTTTAAAAAT
Found at i:19808067 original size:26 final size:26
Alignment explanation
Indices: 19808038--19808093 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
19808028 TGGGTTGACT
19808038 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
19808064 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
19808090 TAAG
1 TAAG
19808094 ATTGGACCAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:19808959 original size:26 final size:26
Alignment explanation
Indices: 19808923--19808985 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
19808913 TTGACTTAGG
19808923 CATATGGAGTTCATTCCCAGTCTAAC
1 CATATGGAGTTCATTCCCAGTCTAAC
*
19808949 CATATGGAGTTCATTCCCAGTCTAAG
1 CATATGGAGTTCATTCCCAGTCTAAC
*
19808975 CATATAGAGTT
1 CATATGGAGTT
19808986 ACTAGACTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (26 bp):
CATATGGAGTTCATTCCCAGTCTAAC
Found at i:19809499 original size:901 final size:892
Alignment explanation
Indices: 19807184--19811624 Score: 5402
Period size: 901 Copynumber: 5.0 Consensus size: 892
19807174 ATTTTAAAAA
* * * * *
19807184 ATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCACAAGCTGGGCTCGGGCATGTG
1 ATTCCCAGTCTAAG-T-GGACCAGA-TGAGGGTTGCAG-CAGCACATGCTGGGCTCGAGCATGTG
* * * * * * * *
19807248 CTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCATCGGAGAACCTGATCAGCG
62 CTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGTCAGAGAACCTGACCGGCG
** * *
19807313 GCATTGGGGTTCCGGTGATCGGGGGGCCGAAGGGGGTGTGCGCACATGATGTGCGATGGGCGCTG
127 GCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
19807378 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTAAAAG
191 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
19807443 ATCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTT
256 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
19807508 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTTTTTGTGCATGCCAAAA
321 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
19807573 AAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAAATTTAAAAAAT
386 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAAT
* * *
19807638 CCTGAACTGTAAAAAGTTTCAAAAATTATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
451 CCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * * *
19807703 CACGTGAAGGCCTAAGGGACCATTGTACGAATTTAGAAGCTATAACAATGGCATTGGCATGTAGA
516 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
19807768 AATATAAAGATGTGCCTAAACCCACCTACCACCCGATTGATCCACGGCTTGCGCATCCTGTCTCT
581 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCT
* **
19807833 CTGGC-CGGCATAATGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
646 CTGGCTCGGCGTAGGGCCCGCCCGCCC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * *
19807897 TCCCAGTCTAAGGTCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGTACGCGGAGGGGGA
710 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
** * * * * * * *
19807962 CCCGATCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTT
775 CCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTC
* * * *
19808027 ATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
840 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
19808080 ATTCCCAGTCTAAGATTGGACCAGATCGAGGTTTGCAGCAGCACATGCTAGGCTCGAGCATCTAC
1 ATTCCCAGTCTAAG--TGGACCAGAT-GAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGC
* * * *
19808145 TGGCGCCGCATTTTTCTCCACCGGGGCA-C--CA-T----CATCG--A-AGAACCTGACTGGCGG
63 TGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGTCAGAGAACCTGACCGGCGG
* * *
19808199 CATT-AGGTTCCGACGATCGAGGGG-CGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
128 CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
19808262 ACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
19808327 CATTTGAGATTTTACAGGTTTGCTACTAGTAGCAATTAAAGTGTCTGAAATTGGGACACTTTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
19808392 CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTCTTTTATGCATGCCAACAAA
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
19808457 AATACAACGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAATTTTTAAAAAAT-
388 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCAAAAAAATTTTAAAAAATC
* ** *
19808520 CTCGAACTGTAAAAAGTTTTGAAAAT-AGTGAAAAATAGAAAACAAGT-GTCTTGCCATGAAACT
452 CT-GAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
19808583 TAACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCG
515 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * * * *
19808648 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTGCACTTCCTATCTC
580 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTC
*
19808713 TCTGGCTC-GCGTAGGGCCCGCCCGCCTCCTCGTTTCGTCGGTTGGCTTAGGCATGCGGAGTTCA
645 TCTGGCTCGGCGTAGGGCCCGCCCGCC-CCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * *** * * * **
19808777 TTCCCAGCCTAACATCAGACCGGTTTGAAGGTTGCGGCAGCAGGATTGGCAGCATGTGGAGGGGG
709 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
*** * *
19808842 ACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GTCCGACTGAGTGCCCGCATGCTCGTT
774 ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGT-CGGCTGAGTGCCCGCACGCTCGTT
* * * *
19808906 TTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAACCATATGGAGTTC
838 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
*
19808961 ATTCCCAGTCTAAGCATATAGAGTTACTAGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGAGC
1 ATTCCCAGTCTAAG----T-G-G--ACCAGA-TGAGGGTTGCAGCAGCACATGCTGGGCTCGAGC
* *
19809026 ATTTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGTCAGAGAACCTGAC
57 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGTCAGAGAACCTGAC
* * *
19809091 CGGTGGCATTGGGGTTCC-AGCGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCAATGG
122 CGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * ** *
19809155 GTGCTGGTACTTGGCCTTTATATTGGCTCCCTAAGCCTCATCAGACCTCGAGAACTCACACCCCC
185 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
19809220 ATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATACCCATTAAAGTGTCTAAAATGGGGAC
250 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
19809285 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTATAGCTGAATTTTTTTGTGCATG
315 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
19809350 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTT-
380 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTA
* **
19809414 AAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTAATGCCATG
445 AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
19809479 AAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
510 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
19809544 TGAAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
575 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
* * * *
19809609 GTCTCTCTGG--CGAGCGTAATGCCCGCCCGCCCACCCGCCTGCTCATTTCGTTGGTTGGCTTAG
640 GTCTCTCTGGCTCG-GCGT-A-G---G---GCCCGCCCGCC-CCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
19809672 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGTAGCAGGATCAGCA
695 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * *
19809737 GCGCGTAGTGGGGGACCCGGCCGATCTCTGGCTTGTGCATCCCGTCCCTCTGGTCGGCTAAGTGC
760 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGTGC
* * * * *
19809802 CCGTACACTTGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
825 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
19809867 TTC
890 TTC
* * * * *
19809870 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT--ATGACAGCACATGTTGGGCTCGGGCGTGT
1 ATTCCCAGTCTAAG-T-GGACCAGA-TGAGGGTTGCA-G-CAGCACATGCTGGGCTCGAGCATGT
* ** * * *
19809933 GCTGGTGCTGCATTTTTCTTCATCGGGGCACCATC-GTCGGAGCATCGTCGGAGAACCTAACCGG
61 GCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACT-GGAGCATCGTCAGAGAACCTGACCGG
** * * * * * * * *
19809997 CGTTATTAGGGTTTCGACAACCGGGGGGGCCTAGGGGGGTGTGTGCAAATGATGTGCGATGGTTG
125 CGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
19810062 TTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCGCCTTA
188 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
19810127 AAGAGCATTTGAGATTTTACAGGTTTGCTACCGGTAGCCATTAAAGTGTATGAAATGGGGACACT
253 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
19810192 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
318 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** *
19810257 ACAAAAATACAAGGATCACGTCTACCAAGGTTT-TAGCCAAAACTCCTTCCAAAAAAATTTTAAA
383 ACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAA
* *
19810321 AAATCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
447 AAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
19810386 AGTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
512 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
19810451 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTAT
577 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGT
* * * *
19810516 CTCTCTGG-TCGGTGTAGTGCCCTTCTGCCCGCCAACTCGTTTCGTCGGTTGGCTTAGGCATACT
642 CTCTCTGGCTCGGCGTAG-GGCC--C-GCCCGCC-CCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * *
19810580 GAGTTCATTCCCAGTCTAAGAAT-GGACTGGATCGAGGGTTGCGGTAGCAGGATCAGTAGCACAC
702 GAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * * * * * *
19810644 AGAGTGAGACCTGGCCGATCCTCGGCTTACGCATCCCGCCCATCTGGTCGGTTGAGCGCCCGCAC
766 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGTGCCCGCAC
*
19810709 GCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---
831 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
**
19810764 A---CC---C------GACC--A--AGGGTTGTGGCAGCACATGCTGGGCTC-AGGCATGTGCTG
1 ATTCCCAGTCTAAGTGGACCAGATGAGGGTTGCAGCAGCACATGCTGGGCTCGA-GCATGTGCTG
*
19810812 GTGCCGCATTTTTCTTCGCC-GGGCACCAT--C---A-C--CG---GAGAACCTGACCGACGGCA
65 GTGCCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGTCAGAGAACCTGACCGGCGGCA
* * * *
19810865 TTTGGGTTTCGACGATCAAGGGGGCCAGGGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGT
130 TTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
19810930 ACTTGGCACTTATGTTGGCCCCCTATCCCTCTTCAAACCTCGAAAACTCACGCCCCCTTAAAGAG
193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
19810995 AATTTGAGATTTTATAAGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
19811060 CAAATGGTCACAAAATCTTGTACACATCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
*
19811125 AATACAAGGATCACGTCTACCAAGTTT-GTGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCC
388 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCC
* *** * * ** *
19811189 CGAACAACAAAAAATTTTAAAAATTGTGAAAAATAGAAAACGACTCGTCTTGCCATGAAACTTCA
453 TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
19811254 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
518 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * * * *
19811319 TATGAAGATGTGCCTAAACCCACTTACCACACTATTGATCCATGGCTTGCGTATCCCGTCTCTCC
583 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCT
* *
19811384 GG-TCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
648 GGCTCGGCGTAGGGCCCGCCCGCCC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
19811448 CTAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATTGGCAACACGCAGAGGGGGAAC
712 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * * * * * *
19811513 TGGCTGATCCCCGGCTTGCGCATCCCGTCCCTCTAGTCGGTTGAGTGCCCGAACGCTCATTTCAT
777 CGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGT
*
19811578 GGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
842 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
19811625 ACTCAAAAAA
Statistics
Matches: 3082, Mismatches: 396, Indels: 168
0.85 0.11 0.05
Matches are distributed among these distances:
857 2 0.00
858 184 0.06
859 3 0.00
860 1 0.00
861 3 0.00
862 222 0.07
863 269 0.09
866 2 0.00
868 1 0.00
869 1 0.00
874 9 0.00
875 48 0.02
876 1 0.00
878 1 0.00
880 5 0.00
881 360 0.12
882 308 0.10
883 3 0.00
884 17 0.01
885 18 0.01
887 63 0.02
888 7 0.00
890 2 0.00
891 3 0.00
893 2 0.00
894 1 0.00
895 6 0.00
896 72 0.02
897 4 0.00
898 21 0.01
899 13 0.00
900 51 0.02
901 588 0.19
902 6 0.00
903 114 0.04
904 257 0.08
905 201 0.07
906 6 0.00
909 205 0.07
910 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
ATTCCCAGTCTAAGTGGACCAGATGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGG
TGCCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGTCAGAGAACCTGACCGGCGGCAT
TGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCTGA
ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGC
TCGGCGTAGGGCCCGCCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGC
CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
Found at i:19809868 original size:26 final size:26
Alignment explanation
Indices: 19809828--19809883 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19809818 TGGGTTGACT
*
19809828 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
19809854 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
19809880 TAAG
1 TAAG
19809884 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:19813613 original size:864 final size:860
Alignment explanation
Indices: 19811629--19813796 Score: 3008
Period size: 863 Copynumber: 2.5 Consensus size: 860
19811619 TACGGAACTC
* * ** *
19811629 AAAAAATCCCGAACCGCAAAAAAATTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
1 AAAAAATCCTGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
19811694 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGC
*
19811759 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
19811824 CGTCTCTCTAGCTGGTGTAGTGCCCGCCCGCCCACCAACTCATTTCGTTGGTTGCCTTAGGCATA
196 CGTCTCTCTAGC-GGTGTAGTGCCTGCCCGCCCGCCAACTCGTTTCGTTGGTTGGCTTAGGCATA
* * * * *
19811889 CGGAGTTCATTCCCAGTCTAAGAATTGACCAGACCGAGGGTTGCGGCACCAGGATCGATAGCACG
260 CGGAGTTCATTCCCAGTCTAAGAATAGATCGGACCGAGGGTTGCGGCAGCAGGATCG-CAGCACG
* * * ** * * * *
19811954 TAGAGGGGGACCCGATCGATCCTCGGTTTACGCATCCCGCCCCTCTTGCCAGCTGAGCGCCCGTA
324 CAGAGAGGGACCTGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGAA
* *
19812019 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCATACCG
389 CTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCATACCG
* *
19812084 AGGGTTACAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCA
454 AGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAGTTTTCTTCGTCAGGGCA
** * ** * *
19812149 CCATCGTCGGAGAACTTGACCGGTGGCATTGAGGTTCTGACGACTGGGGGGCCGGGGGGGCTGTG
519 CCATCACCGGAGAACCTGACCGACGGCATTGAGGTTCTGACGAC-AGGGGGCCGGGGGGGCTGTC
19812214 CGCACATAATGTGCGATGGATGCTAGTACTTGGCCCTCATATTGGCCCCCTAACCCTCATCAAAC
583 CGCACATAATGTGCGATGGATGCTAGTACTTGGCCCTCATATTGGCCCCCTAACCCTCATCAAAC
* * * *
19812279 CTGGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTA
648 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTA
*
19812344 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
713 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAG
* **
19812409 CTGAATGTTTTTGTACATGCCAACAAAAATACAATGATCATGTCTACCAAGTTTGGGGCCAAAAC
778 CTGAATGTTTTTGTACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
*
19812474 TCGCTCCAAAAAAATTTA
843 ACGCTCCAAAAAAATTTA
* *
19812492 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCCTGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
19812557 GAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGC
* * *
19812622 ATGTAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
19812687 TGTCTCTCTGGCCGGTGTAGTGCCCT-TCAGCCCGCCAACTCGTTTCGTTGGTTGGCTTAGGCAT
196 CGTCTCTCTAG-CGGTGTAGTG-CCTGCCCGCCCGCCAACTCGTTTCGTTGGTTGGCTTAGGCAT
* * *
19812751 ACAGAGTTCATTCCCAGTCTAAGAATGGATCGGACCGAGGGTTGCGGTAGCAGGATCAGCAGCAC
259 ACGGAGTTCATTCCCAGTCTAAGAATAGATCGGACCGAGGGTTGCGGCAGCAGGATC-GCAGCAC
* * * * *
19812816 ACAGAGTGGGACCTGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCAGAGCACCCGC
323 GCAGAGAGGGACCTGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGA
*
19812881 GCTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-AC
388 ACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-ATAC
* *** * * *
19812945 TGAGGGTTGTGGCAGCACATGCTGGGCTCGGGTATGTGCTGGTGCCGCAGTTTTCTTCG-CCGGG
452 CGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAGTTTTCTTCGTCAGGG
* *
19813009 CACCATCACCGGAGAACCTGACCGACGGTATTGGGGTTCCGGTGATCGA-AGGGGGCCGAGGGGG
517 CACCATCACCGGAGAACCTGACCGACGGCATTGAGGTT-C--TGA-CGACAGGGGGCCG-GGGGG
* * * * * * * *
19813073 GGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCT
577 GCTGTCCGCACATAATGTGCGATGGATGCTAGTACTTGGCCCTCATATTGGCCCCCTAACCCTCA
19813138 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
642 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
*
19813203 CCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-ACCATCGAG
707 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CATCGAG
* * * * *
19813267 TTTTTAGCTGAATTTTTTTGTGCTTGCCAATAAAAATACAAGGATCACATCTACCAAGTTT-GTG
771 TTTTTAGCTGAATGTTTTTGTACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG
19813331 CCAAAACAC-CTTCCAAAAAAATTTTA
836 CCAAAACACGC-TCCAAAAAAA-TTTA
* ** ** *
19813357 AAAAATTCC-GAACAGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCAT
1 AAAAAATCCTGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
19813421 GAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGC
* * *
19813486 GTGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACACTATCGATCCACGGCTTGCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
19813551 CATCTCTCTAGTCGGCGTAATGCCTGCCCGCCCGTCC-GCTCGTTTCGTCGGTTGGCTTAGGCAT
196 CGTCTCTCTAG-CGGTGTAGTGCCTGCCCGCCCG-CCAACTCGTTTCGTTGGTTGGCTTAGGCAT
* * * *
19813615 ACGGAGTTCATTCCTAGTCTAAG-ATCAGATCGAACTGAGGGTTGCGACAGCAGGATCGGCAGCA
259 ACGGAGTTCATTCCCAGTCTAAGAAT-AGATCGGACCGAGGGTTGCGGCAGCAGGATC-GCAGCA
* * * * * * * *
19813679 CGCAGAGAGGGAACTAGCCGATCCCCAGCTTACGCATCCTGCCCCTTTGGCCGGTTGAGTGCCCG
322 CGCAGAGAGGGACCTGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
19813744 AACAT-TCATTTCATGGGTTTACTTTGGCATACGGAGTTCATTCCCAGTCTAAG
387 AAC-TCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19813797 CACACGGAGG
Statistics
Matches: 1154, Mismatches: 135, Indels: 31
0.87 0.10 0.02
Matches are distributed among these distances:
862 35 0.03
863 462 0.40
864 400 0.35
865 254 0.22
866 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (860 bp):
AAAAAATCCTGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTAGCGGTGTAGTGCCTGCCCGCCCGCCAACTCGTTTCGTTGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGAATAGATCGGACCGAGGGTTGCGGCAGCAGGATCGCAGCACGCA
GAGAGGGACCTGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGAACT
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCATACCGAG
GGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAGTTTTCTTCGTCAGGGCACC
ATCACCGGAGAACCTGACCGACGGCATTGAGGTTCTGACGACAGGGGGCCGGGGGGGCTGTCCGC
ACATAATGTGCGATGGATGCTAGTACTTGGCCCTCATATTGGCCCCCTAACCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTG
AATGTTTTTGTACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACG
CTCCAAAAAAATTTA
Found at i:19814237 original size:453 final size:453
Alignment explanation
Indices: 19813391--19814249 Score: 1165
Period size: 453 Copynumber: 1.9 Consensus size: 453
19813381 TTGAAAATTG
*
19813391 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
19813456 GAATTTATAAGCCATAAAAATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACTTA
66 GAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGACGTGCCTAAACCCACCTA
* *
19813521 CCACACTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGTCGGCGTAATGCCTGCCCGCCCGT
131 CCACACTATCGATCCACGGCTTGCCCATCCCATCTCTCTAGCCGGCGTAATGCCTGCCCGCCCGT
* * * * *
19813586 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACT
196 CCACTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT
* * * *
19813651 GAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGAGGGAACTAGCCGATCCCCAGCTTACGCAT
261 GAGGGTTGCAACAGCAAGATCGACAGCACGCAGAGAGGGAACCAGCCGATCCCCAGCTTACGCAT
* * ** * * ** *
19813716 CCTGCCCCTTTGGCCGGTTGAGTGCCCGAACATTCATTTCATGGGTTTACTTTGGCATACGGAGT
326 CCCGCCCCTCTGGCCGACTGAGCGCCCGAACATTCATTTCATGGGTTGACTGAGGCATACGAAGT
19813781 TCATTCCCAGTCTAAGCACACGGAGGTCAAAAAATCCCGAACCGTAAAAAATTTCAAAAATCA
391 TCATTCCCAGTCTAAGCACACGGAGGTCAAAAAATCCCGAACCGTAAAAAATTTCAAAAATCA
* *
19813844 TGAAAAATACG-AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
1 TGAAAAATA-GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
19813908 TGAATTTACAAGCCATAAAAATGGCACTGGCATGTAGAAATATGAAGACGTGCCTAAACCCACCT
65 TGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGACGTGCCTAAACCCACCT
* ** * * * * *
19813973 ACCACCCTATCGATCCACGGCTTGCCCATCCTGTCTCTCTGGCCGGTGTAGTGCCCT-TCTGCCC
130 ACCACACTATCGATCCACGGCTTGCCCATCCCATCTCTCTAGCCGGCGTAATG-CCTGCCCGCCC
* *
19814037 G-CCAACTCATTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGACCA
194 GTCC-ACTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACC-
* * * *
19814100 GAAC-GAGGGTTGCAACAGCAAGATCGATAGCACGCAGAGTGGGACCCGGCCGATCCCC-GACTT
256 GAACTGAGGGTTGCAACAGCAAGATCGACAGCACGCAGAGAGGGAACCAGCCGATCCCCAG-CTT
* * * *
19814163 ACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTT-GTTTCGTGGGTTGACTGAGGCAT
320 ACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGAAC-ATTCATTTCATGGGTTGACTGAGGCAT
* *
19814227 ATGAAGTTCATTCCCAGTTTAAG
384 ACGAAGTTCATTCCCAGTCTAAG
19814250 ATCGGACCGG
Statistics
Matches: 350, Mismatches: 49, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
452 3 0.01
453 335 0.96
454 12 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (453 bp):
TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGACGTGCCTAAACCCACCTA
CCACACTATCGATCCACGGCTTGCCCATCCCATCTCTCTAGCCGGCGTAATGCCTGCCCGCCCGT
CCACTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT
GAGGGTTGCAACAGCAAGATCGACAGCACGCAGAGAGGGAACCAGCCGATCCCCAGCTTACGCAT
CCCGCCCCTCTGGCCGACTGAGCGCCCGAACATTCATTTCATGGGTTGACTGAGGCATACGAAGT
TCATTCCCAGTCTAAGCACACGGAGGTCAAAAAATCCCGAACCGTAAAAAATTTCAAAAATCA
Found at i:19815114 original size:26 final size:26
Alignment explanation
Indices: 19815078--19815128 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19815068 TGACTTAGGC
19815078 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
19815104 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19815129 ATCAAGCCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:19815561 original size:890 final size:893
Alignment explanation
Indices: 19814231--19824045 Score: 12358
Period size: 902 Copynumber: 11.0 Consensus size: 893
19814221 AGGCATATGA
* * *
19814231 AGTTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
* ** *
19814296 TGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA---TC---G---C--CGGAGAACTTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCGTCGGAGAACCTGACC
* * * * * * * **
19814350 GACGGCATTGAGGTTCCGATGATCGGTGGGGTCGGGGGGCGTGCGCACATA-ATGTGTGATGGGT
131 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACA-AGATGTGCAATGGGT
* * *
19814414 GCTGGTACGTGGCCCTCATATTGGCCCCCTAACCCTCATCAAACCTTGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
*
19814479 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
19814544 TTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
19814608 AAAAAAAATACAATGATC-CTGTCTACCAAGTTTGGGTTCAAAACTCCTTCCGAAAAAATTTTAA
390 AACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAA
* *
19814672 AAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
454 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
19814737 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
19814802 GCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
* *
19814867 TCTCTCTGGCCGGCTTAGTGCCCGCCCG-C-CCGTTTCATTGGTTGGCTTAGGCATACGGAGTTC
649 TCTCTCTGGCCGGCTTAGTGCCCGCCCGCCACCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * ** *
19814930 ATTCCCAGTCTAAGACCAGACCGGACTGAGGGTTGCAGAAGCAAGATTGGCAGCACACAAAGGGG
714 ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGAAGCAAGATCGGCAGCATGCAGAGGGG
* * * *
19814995 GACCCGACCGATCCTCAGCTTACACATCCCGCCCCTCTGGCCAGCTGAGCGCCCACACGCTCGTT
779 GACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
19815060 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACGG
844 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
*
19815110 AGTTCATTCCCAGTCTAAGATC-AAGCCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGC
* * * *
19815174 ATGTGCTGGTGCGGCATTTTTCTTCGTCGGGGCATCATCGTCGGAGCATCGTCGGAGAACCTAAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCGTCGGAGAACCTGAC
* * *
19815239 TGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTACGCACAAGATGTGCAATGGGT
130 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACAAGATGTGCAATGGGT
* * *
19815304 GCTGGTACTTGGCCCTTATATTGGTCCCGTATCCCTCATTAAACCTTGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
** * *
19815369 AAAGAGCATTTGAGATTTTATTGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATAGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
19815434 TTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
19815499 AA-AAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAAA
* *
19815563 AAATC-CTGAACCGTAAAAATTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCAT-A
455 AAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
*
19815626 GAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATT-CC
519 -AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGGC
*
19815690 ATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
582 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
*
19815755 CGTCTCTCTGGCCGG-TGTAGTGCCCGCCCGTTCACCCGCCAACTCATTTCGTCGGTTGGCTTAG
647 CGTCTCTCTGGCCGGCT-TAGT----GCCCG----CCCGCC-AC-CGTTTCGTCGGTTGGCTTAG
* * * * * * * *
19815819 GCATACGGAGTTCATTCCCAGTCTATGATCATACCGAACCGAGGGTTACGGTAGTAGGATCGGCA
701 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGAAGCAAGATCGGCA
* * * * * *
19815884 GCATGCAGAGGGGGACCCGACTGATCC-CTGAATTGGGCATCCCACCCCTCTGGCCGGCTGAGCA
766 GCATGCAGAGGGGGACCCGACCGATCCTCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
19815948 CCCGCACGCTCGTTT-GTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTCAGCATACGG
830 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
*** * ** * *
19816011 AGTTCATTCCCAGTCTAAGATCGGATTTGACCAAGGGTTGCGACAGCACATGTTGGGCTCGCGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
*
19816076 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCACCGCCGGAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCACCGTCGGAGAACCTGAC
* * * *
19816140 CGGCGGCATTGGGGTT-CTAGCGATCGGGGGGGCCGGGGGGAGTGCGCACATGATGTGCAATGGG
130 CGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCAGGGGGTGTGCGCACAAGATGTGCAATGGG
*
19816204 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* *
19816269 TAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
19816334 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** *
19816399 CAA-AAAAATACAATGATCTTGTCTACCAAGTTTGGGTTCAAAACTCCTT-CAGAAAAAATTTTA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCA-AAAAAATTTTA
* * *
19816462 AAAAATCTTGAACCGTAAAAAGTTTCTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGGCAT
453 AAAAATCTCGAACCGTAAAAAGTTTC-AAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
19816527 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
19816592 ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
582 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
* *
19816657 CGTCTCTCTGGCTGGCTTAGTGCCCGCCCGCC-CCGTTTTGTCGGTTGGCTTAGGCATACGGAGT
647 CGTCTCTCTGGCCGGCTTAGTGCCCGCCCGCCACCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * **
19816721 TCATTCCCAGTCTAAGA-CTAGACCGGACTGAGGGTTGCAGCAGCAAGATCGGCAGCACACAGAG
712 TCATTCCCAGTCTAAGATC-AGACCGGACTGAGGGTTGCGGAAGCAAGATCGGCAGCATGCAGAG
* * **
19816785 GGGGACCCGACCGATCCTCAGCTTGCACATCCCGCCCCTCTGGCCAGCAAAGCGCCCGCACGCTC
776 GGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
19816850 GTTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGTATACGG
841 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
19816903 AGTTCATTCCCACTCTAAGATCAGG-CCAGATCGAGGGTTGCGGTAGCACAT-CTTGGGCTTGGG
1 AGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCGGTAGCACATGC-TGGGCTCGGG
*
19816966 CATGTGCTGGTGCGGCATTTTTCTTCGTCGGGGCACCAT--T------A---TCGGAGAACCTGA
64 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCGTCGGAGAACCTGA
* * *
19817020 CTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTACGCACAAGATGTGCGATGGG
129 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACAAGATGTGCAATGGG
* * *
19817085 TGCTAGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATTAAACCTTGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* * *
19817150 TAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATAGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
19817215 CTTCTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
19817280 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCAAAACTTCTTTCC-AAAAAATTTTA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAC-TCCTTCCAAAAAAATTTTA
* * *
19817344 AAAAATCTTGAACCTTAAAAATTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT-
453 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
19817408 AGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAATAAAAATGGCAATT-
518 A-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-ATAAAAATGGC-ATTG
* *
19817472 CCATGCAGAAAATATGAAGATGT-ACTAAACCCACCTACCA-CCTATCGATCCACGACTTGCGCA
580 GCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
19817535 TCCCGTCTCTCTGG-CGG-TGTAGTGGCCCGCCCGTTCGCCCGCCAACTCGTTTCGTCGGTTGGC
644 TCCCGTCTCTCTGGCCGGCT-TAGT-----G-CC---CGCCCGCC-AC-CGTTTCGTCGGTTGGC
* * * * * *
19817598 TTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACC-AAATCGAGGGTTACGGTAGCAGGAT
697 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGAAGCAAGAT
* * * * *
19817662 CGGTAGCATGCAGAGGGGGACCCGACCGATCC-CTGAATTGGGCATCCCACCCCTCTGTG-CGGC
761 CGGCAGCATGCAGAGGGGGACCCGACCGATCCTCAG-CTTGCGCATCCCGCCCCTCTG-GCCGGC
* *
19817725 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-TGAGTTCATTCCCAGTCTAAGCA
824 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
19817789 TACGG
889 TACGG
* ** * *
19817794 AGTTCATTCCTAGTCTAAGATCGGACGGGACC-AAGGTTGAGGTAGCACATGCT-GGCT-GGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
* *
19817856 TGTTCTGGT-CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCACCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCGTCGGAGAACCTGACC
** * *
19817920 AACGACATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGCAATGGGTG
131 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACAAGATGTGCAATGGGTG
*
19817984 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* *
19818048 AAGAGCTTTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
19818113 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
19818178 ACCAAAATACAAGTATCACGTCTACCAAGTTTGGGG-CGAAAACTCCTTCCGAAAAAATTTTAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTC-AAAACTCCTTCCAAAAAAATTTTAAA
* * * * * *
19818242 CAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAATCGTCTTGCCATGAA
455 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
*
19818307 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCATG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
19818372 TAGAAATTTGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * * * * *
19818437 TTCTCTGGCCGACTTAGTG--CGCCCGCCCACGCCGTTTTGTCCGATTTTGCTTAGGCAAACGGA
650 CTCTCTGGCCGGCTTAGTGCCCGCCCG-CCA--CCGTTTCGT-CG-GTTGGCTTAGGCATACGGA
* * * **
19818500 GTTCATTCCCAGTCCTAAGA-CTAGACCCCGACTGAGGGTTGC-AACAGCAAGATCAGCAGCACA
710 GTTCATTCCCAGT-CTAAGATC-AGA-CCGGACTGAGGGTTGCGGA-AGCAAGATCGGCAGCATG
* * ** *
19818563 CAGAGGGGGACCCGACCGAATCCTCAGCTTGCACATCCCG-CCCTCTGG-CAGCAAAACG-CCGC
771 CAGAGGGGGACCCGACCG-ATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
19818625 ACGCTCGTTCCGTGGGTTGACTTA-GCATACGAGAAAAAGGTTCATTCCCCAGTCTAAGTATAAA
835 ACGCTCGTTTCGTGGGTTGACTTAGGCATACG-G----A-GTTCATT-CCCAGTCTAAGCAT--A
19818689 C-G
891 CGG
* * * *
19818691 AGTTCATTTCCAG--TAAGATCAGG-CCAGATCGAGGGTTGCGGTAAGCACATCCTGGGCTTGGG
1 AGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCGGT-AGCACATGCTGGGC-TCGG
*
19818753 GCATGTGCTGGTGCGGCATTTTTC-TCGTCGGGGCACCAT--T------A---TCGGAG-ACCTG
63 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCGTCGGAGAACCTG
* * * *
19818805 ACTGGCGGCATTGGGGTTCCCGACGATCGGCGGGGCCAGGGGGTGTACGCACAAGATGT-CGATG
128 ACCGGCGGCATTGGGGTT-CCGACGATCGGGGGGGCCAGGGGGTGTGCGCACAAGATGTGCAATG
* *
19818869 GGTGGCTAGTACTTGGCCCTTATATTGGTCCCCCTATCCCTCATTAAACCTTGAG-ACTCACACC
192 GGT-GCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
* * *
19818933 CCCTTAAAGAGCCCTTTGTGATTTTACAGGTTTGCTGCCAGTAG-CATTTAAAGTGTCTGAAATA
255 CCCTTAAAGAG-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATG
*
19818997 GGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAGCTGAATTTTTTTG
318 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTTTTTG
* *
19819062 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTTCTTCC-CAAAA
382 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAA
* * * *
19819126 A-TTCAAAAAATC-CTGAACCTTAAAAAATTTTCAAAACTCATGAAAAAATAAAAAACGAGTCGT
447 ATTTTAAAAAATCTC-GAACCGT-AAAAAGTTTCAAAAATCATG-AAAAATAAAAAACGAGTCGT
19819189 C-TGCCAT-AGAACTTCACGTGAAGGCTTAAGGGACCATTGTACTGAA-TTA-AA-CCATAAAAA
509 CTTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTA-TGAATTTACAAGCCAT-AAAA
* * *
19819249 ATGGCAATT-CCATGCAGAAATATGAAAGATGTACCTAACCCCACCTACCA-CCTAGTCGATCCA
571 ATGGC-ATTGGCATGCAGAAATATG-AAGATGTGCCTAAACCCACCTACCACCCTA-TCGATCCA
* * **
19819312 CGACTTGC-CATCCCGTCTCTCTGGCCCAG-TGTAGTGCCCCCGCCGTTCGCCGCC-ACTCTGTT
633 CGACTTGCGCATCCCGTCTCTCTGG-CCGGCT-TAGTG--CCCGCC---CGCCACCGTTTC-G-T
* * ** ** **
19819374 CGGGTT-GCTTAGGCATACGGAGTTCATTTCGCAGTCTAATATCAGACCAAATCAAAGGGTTATG
689 C-GGTTGGCTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGCG
* * * * * *
19819438 GTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACCGATCC-CTGAATTAG-GCATCCCACCCC
751 GAAGCAAGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCTCAG-CTT-GCGCATCCCGCCCC
* *
19819501 TCTGTG-CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCC
814 TCTG-GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
19819565 CAGTCTAAGCATACGG
878 CAGTCTAAGCATACGG
* ** * *
19819581 AGTTCATTCCTAGTCTAAGATCGGACGGGACCAAGGGTTGAGGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
* * * * *
19819646 TGTTCTAGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCACCGCCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCGTCGGAGAACCTGACC
* * * *
19819711 GGCGACATTGTGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTG
131 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACAAGATGTGCAATGGGTG
*
19819776 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTGGAGAACTCACACCCCTTT
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GAGAACTCACACCCCCTT
* *
19819840 AAAGAGCTTTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
19819905 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTGTTTGGTGCATTG
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCA-TG
* * * *
19819970 -CAAAAAAAATACCGATGATC-TGTCTACC-AGTTTGGGGTTCAAAACTCCTT-CAGAAAAAATT
388 CCAACAAAAATA-CAAGGATCACGTCTACCAAGTTTGGGG-TCAAAACTCCTTCCA-AAAAAATT
** * * *
19820031 TTAAAAAAATCTCCGAACCGTAAAAAAGTTTTTAAAATCGTG-AAAAT-AACAATGAGTCGTCTT
450 TT-AAAAAATCT-CGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
*
19820094 GGCATGAAACTTCA--TGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAAATGGCC
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-C
* *
19820156 ATTGGCATGTATGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCAC-ACTTG
576 ATTGGCATGCA-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* *
19820220 TGCAT-CCGTCT-TCTGGCCGGCTTTAGTGCCCGCCCGCCCAGCCGTTTCGTCGATTGGCTTAGG
640 CGCATCCCGTCTCTCTGGCCGGC-TTAGTGCCCGCCCG-CCA-CCGTTTCGTCGGTTGGCTTAGG
* * *
19820283 CATAC-GAGTTCATTCCCAGTCTAAAGAAT-AG-CCCGACTGAGGGTTGC-AATAGCAAGATCAG
702 CATACGGAGTTCATTCCCAGTCT-AAG-ATCAGACCGGACTGAGGGTTGCGGA-AGCAAGATCGG
** * * **
19820344 CAGCAACACAGAGGGGGACCCGACCGATCCTCAGCTTGCACATCCCGCCCCTCTGGCCCAGCAAA
764 CAGC-ATGCAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGG-CCGGCTGA
* * *
19820409 GCG-CCGCACGCTCGTTCCGTGGGTTG-CTTAGGCAATACAGAGTTCATTCCCAGTCTAAGTATA
827 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGCATA
19820472 CGG
891 CGG
* * *
19820475 AGTTCATTCCCAGTCTAAGATCAGG-CCAGATCGAGGGTTGCGGTAGCATAT-CTTGGGCTTGGG
1 AGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCGGTAGCACATGC-TGGGCTCGGG
*
19820538 CATGTGCTGGTGCGGCATTTTTCTTCGTCGGGGCACCAT--T------A---TCGGAGAACCTGA
64 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCGTCGGAGAACCTGA
* * *
19820592 CTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTACGCACAAGATGTGCGATGGG
129 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACAAGATGTGCAATGGG
* * *
19820657 TGCTAGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATTAAACCTTGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* *
19820722 TAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAG-CATTTAAAGTGTCTGAAATAGGGAC
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATGGGGAC
*
19820786 ACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
19820851 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTTCTTCCCAAAAAATTCTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTA
* *
19820916 AAAAATC-CTGAACCTTAAAAATTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
453 AAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
19820980 -AGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATT-
517 GA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATTG
* *
19821043 CCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
580 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
19821108 CCCGTCTCTCTGGCCGG-TGTAGTGCCCGCCCGTTCGCCCGCCAACTCGTTTCGTCGGTTGGCTT
645 CCCGTCTCTCTGGCCGGCT-TAGT----G-CC---CGCCCGCC-AC-CGTTTCGTCGGTTGGCTT
* * * * * * * * *
19821172 AGGCATACGGAGTTCATTCGCAGTCTATGATCAAACC-AAATCAAGGGTTACGGTAGCAGGATCG
699 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGAAGCAAGATCG
* * * * *
19821236 GTAGCATGCAGAGGGGGACCCGACCAATCC-CTGAATTAG-GCATCCCACCCCTCTGTG-CGGCT
763 GCAGCATGCAGAGGGGGACCCGACCGATCCTCAG-CTT-GCGCATCCCGCCCCTCTG-GCCGGCT
* *
19821298 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCAT
825 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
19821363 ACGG
890 ACGG
* ** *
19821367 AGTTCATTCCTAGTCTAAGATCGGACGGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
* * * * * *
19821432 TGTTCTAGTGTCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCACCGCCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCGTCGGAGAACCTGACC
* * * * *
19821497 GGCGACATTGTGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTTCAATGGGTG
131 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACAAGATGTGCAATGGGTG
*
19821562 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* * *
19821627 AAGAGCTTTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCCGAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
19821692 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
19821757 ACCAAAATACAAGTATCACGTCTACCAAGTTTGGGG-CGAAAACTCCTTCCGAAAAAATTTTAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTC-AAAACTCCTTCCAAAAAAATTTTAAA
* * * * * *
19821821 CAATTTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAATCGTCTTGCCATGAA
455 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
* * *
19821886 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCACG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * ** *
19821951 TAGAAATTTGAAGATGTGCCTAAACCCACCTACCATTCTATCGATCCACAACTTGCGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* *
19822016 CTCTCTGGCCGACGTAGTGCCCGCCCGCACACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
650 CTCTCTGGCCGGCTTAGTGCCCGCCCGC-CA----C-CGTTTCGTCGGTTGGCTTAGGCATACGG
* * ** * * *
19822081 AGTTCATTCCCAGTCCAAGATCGGATTGGA-TCAAGGGTTGC-GACAGCAGGCT-GAGCAGCATG
709 AGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGA-AGCAAGATCG-GCAGCATG
* * * * * * * * *
19822143 CAGAGGGTGCCCCGATCAATCCCCAGCTTGCGAATCTCGCCCCTCTGGCCGGTTGAACGCCCGCA
771 CAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
19822208 CGCTCGTTTCATGGGTTGTCTTGGGCATATGGAGTTCATTCCCAGCCTAAGCATACGG
836 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * *
19822266 AGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTACGGCAACACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
* * *
19822331 TGTGCTGGTGCCGCATGTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCGTCGGAGAACCTGACC
* * * * * * *
19822396 AGTGGAATTGGGGTTCCGACGATCGAGGGAGCCAAGGCGAGGTGTGCACACATGATGTGCAATGG
131 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGG-G-GGTGTGCGCACAAGATGTGCAATGG
* * *
19822461 GTGCTGGTAGC-TGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACTCC
193 GTGCTGGTA-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
*
19822525 CTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
19822590 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * **
19822655 GCCAACCAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTT
* * * * *
19822720 AAACAATATCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
452 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
*
19822785 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * ** *
19822850 ACACAGAAATTTGAAGATGTGCCTAAACCCACCTACCAAACTATCGATCCACGGCTTGCGCATCC
582 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
* ** * * *
19822915 TGTCTCTC-AACCGGCGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGA
647 CGTCTCTCTGGCCGGCTTAGTGCCCGCCCG-CCAC-CGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * * * * *
19822979 GTTCATTCCTAGTCTAAGATCAGTTCGGACCGAGGGTTGCGGTAGCAGGATAGGCAGCATGCATA
710 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGAAGCAAGATCGGCAGCATGCAGA
* ** * *
19823044 GGGGGACCTGGTCGATCCTCAGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCT
775 GGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
19823109 CGTTTCGTGGGTTGACTTAGGCATACAGAATTCTTTCCCAGTCTAAGCATACGG
840 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * *
19823163 AGTTCATTGCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
* * *
19823228 TGTGCTCGTGCCACATTTTTCTTCGTCGGGGCACCA---T--------CGTCGGAGAACTTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCGTCGGAGAACCTGACC
* * * **
19823282 GACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGTGGCTGTGCGCACATA-ATGTGTGATG
131 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGG-GG-TGTGCGCACA-AGATGTGCAATG
* *
19823346 GGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
* * *
19823411 CTGAAAAAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
19823476 CAC-TTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTTTTTGTACAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
** * * * *
19823540 GTGAA-AAAATATACAAGGATCACGTCCACCATGTTTAGGGCCAAAACTCCTTCCAAAAAAATTT
387 GCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTT
* * * * *
19823604 AAAAAAATC-CTGAACTGTAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
451 TAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
* * * *
19823668 ATGAAACCTCACGTGAAGGCTTAAAGGACCATAGTATGAATTTACAAGCCATAAAAATGGCACTG
515 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * * * *
19823733 GCACGTAGAAATATTAAGATGTGCCCAAACCCACCTACCACCCTATCGGTCTACGGCTTGCGCAT
580 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
* * *
19823798 CCTGTCTCTCTGGCCGG-TGTAGTGGCCTTCCGCCCGCCAACTCATTTCGTCGATTGGCTTAGGC
645 CCCGTCTCTCTGGCCGGCT-TAGT-G-C--CCGCCCGCC-AC-CGTTTCGTCGGTTGGCTTAGGC
* * * * *
19823862 ATACAGAGTTCATTCCCAGTCTAAGAAT-GGACCGAACCGAGGGTTGC-GACAGCAAGATCGACA
703 ATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACTGAGGGTTGCGGA-AGCAAGATCGGCA
* * * * * * **
19823925 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCTGATTGAGCGC
766 GCATGCAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
19823990 CCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAG
831 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
19824046 ATCGGATCGG
Statistics
Matches: 7803, Mismatches: 822, Indels: 611
0.84 0.09 0.07
Matches are distributed among these distances:
878 1 0.00
879 108 0.01
880 19 0.00
881 414 0.05
882 200 0.03
883 318 0.04
884 33 0.00
885 305 0.04
886 205 0.03
887 36 0.00
888 43 0.01
889 110 0.01
890 752 0.10
891 445 0.06
892 746 0.10
893 176 0.02
894 232 0.03
895 167 0.02
896 380 0.05
897 408 0.05
898 83 0.01
899 321 0.04
900 75 0.01
901 705 0.09
902 931 0.12
903 554 0.07
904 13 0.00
905 22 0.00
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCACCGTCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACAAGATGTGCAATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAAAA
AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
TCTCTGGCCGGCTTAGTGCCCGCCCGCCACCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGAAGCAAGATCGGCAGCATGCAGAGGGGGA
CCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
Found at i:19815605 original size:26 final size:26
Alignment explanation
Indices: 19815551--19815607 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
19815541 CTTCTTCCAA
* ***
19815551 AAAAATTTTAAAAAATCCTGAACCGT
1 AAAAATTTTAAAAAATCATGAAAAAT
*
19815577 AAAAATTTTCAAAAATCATGAAAAAT
1 AAAAATTTTAAAAAATCATGAAAAAT
19815603 AAAAA
1 AAAAA
19815608 ATGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.11, G:0.05, T:0.25
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCATGAAAAAT
Found at i:19816014 original size:26 final size:26
Alignment explanation
Indices: 19815977--19816026 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19815967 GTTGACTTAG
*
19815977 GCATACGTAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTCA
19816003 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
19816027 AAGATCGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTCA
Found at i:19816900 original size:26 final size:26
Alignment explanation
Indices: 19816871--19816921 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19816861 TGACTTAGGC
*
19816871 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCACTCTAAGT
*
19816897 ATACGGAGTTCATTCCCACTCTAAG
1 ATACAGAGTTCATTCCCACTCTAAG
19816922 ATCAGGCCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCACTCTAAGT
Found at i:19817388 original size:26 final size:26
Alignment explanation
Indices: 19817334--19817390 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
19817324 CTTCTTTCCA
* ***
19817334 AAAAATTTTAAAAAATCTTGAACCTT
1 AAAAATTTTAAAAAATCATGAAAAAT
*
19817360 AAAAATTTTCAAAAATCATGAAAAAT
1 AAAAATTTTAAAAAATCATGAAAAAT
19817386 AAAAA
1 AAAAA
19817391 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.09, G:0.04, T:0.28
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCATGAAAAAT
Found at i:19819583 original size:26 final size:26
Alignment explanation
Indices: 19819547--19819599 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19819537 GTTGACTTAG
*
19819547 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19819573 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19819599 G
1 G
19819600 ATCGGACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19820472 original size:26 final size:26
Alignment explanation
Indices: 19820443--19820493 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19820433 TGCTTAGGCA
19820443 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
*
19820469 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19820494 ATCAGGCCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:19821369 original size:26 final size:26
Alignment explanation
Indices: 19821333--19821385 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19821323 GTTGACTTAG
*
19821333 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19821359 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19821385 G
1 G
19821386 ATCGGACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19822262 original size:26 final size:26
Alignment explanation
Indices: 19822232--19822283 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19822222 GTTGTCTTGG
*
19822232 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
19822258 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19822284 TATCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:19824320 original size:262 final size:262
Alignment explanation
Indices: 19823855--19824377 Score: 805
Period size: 262 Copynumber: 2.0 Consensus size: 262
19823845 CGTCGATTGG
19823855 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATGGACCGAACCGAGGGTTGCGACAGCAAGAT
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATGGACCGAACCGAGGGTTGCGACAGCAAGAT
* * * * *
19823920 CGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCTGATTG
66 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
19823985 AGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCG
131 AGCGCCCGCACGCTAGTTTCATGCGTTGACTTAGGCATACGGAGTTCATTACCAGCCTAAGATCG
19824050 GATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
196 GATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
19824115 CA
261 CA
* * * * *
19824117 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATGGACTGGACCGAGGGTTGCGGCAGCAGGAT
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATGGACCGAACCGAGGGTTGCGACAGCAAGAT
* * * * * *
19824182 C-AGTAGCACGCAGTGTGGGACCTGGCCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGACT
66 CGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * *
19824246 GAGCGCCCGCACGCTCGTTTCATGCGTTGACTTAGGTATACGGAGTTCATTACCAGTCTAAGATC
130 GAGCGCCCGCACGCTAGTTTCATGCGTTGACTTAGGCATACGGAGTTCATTACCAGCCTAAGATC
* * *
19824311 GGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCT
195 GGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
19824376 TC
260 TC
19824378 GTCGGGCACA
Statistics
Matches: 235, Mismatches: 25, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
261 1 0.00
262 234 1.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (262 bp):
CTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATGGACCGAACCGAGGGTTGCGACAGCAAGAT
CGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTG
AGCGCCCGCACGCTAGTTTCATGCGTTGACTTAGGCATACGGAGTTCATTACCAGCCTAAGATCG
GATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
CA
Found at i:19826023 original size:877 final size:884
Alignment explanation
Indices: 19824283--19827518 Score: 4103
Period size: 877 Copynumber: 3.7 Consensus size: 884
19824273 TGACTTAGGT
* * *
19824283 ATACGGAGTTCATTACCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* * * * * *
19824348 CGGGCATGTGCTGGTGTCACATTTTTCTTCGTC-GGGCACAATCACCGGAGAACCTGACCGACAG
66 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCC-GAGAACC--ACCGACGG
* *
19824412 TAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGGGTACATGATGTGCGATGGGTGCTG
128 TAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*** * *
19824477 GTACTTCAACCTTATATTGGCCCCCTATCCCGCATCAAACCTGGAGAACTCACACCCCCTTAAAG
193 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
19824542 AGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTT
258 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGAGACACTTTT
*
19824607 TTCAAATGGTCACAAAATCTTGTACA-----A----TT--C-GAGTTTTTTTGTGCATGCC----
323 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* *
19824656 ---ATACAAGGATCACGTCTACCAAGTTTGGTGCC-AAAATCCTTTCGAAAAAAATTTAAAAAAT
388 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAAT
** * * ** * * *
19824717 TCAAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCATCTTAG-CATGAAACT
453 TCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT-GCCATGAAACT
*
19824781 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAA
517 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
19824846 AAATATGAAGATGTGCCTAAACCCGCCT-CTCACCCTATCGATCCACGGCTTGCGCATCTCGTAT
582 AAATATGAAGATGTGCCTAAACCCACCTAC-CACCCTATCGATCCACGGCTTGCGCATCCCG--T
* *
19824910 CTCTGGTTGGCGTAGTCTCCGCCCGTCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGC
644 CTCT--CTGGCGTAG--T--GCCCGT--GCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGC
* * * * *
19824975 ATACGGAGTTCATTCATAGTCTAAGATCGGACCAGACCGAGGTTTGCGGCAGCAGGATTGGCAGC
701 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGA-TGGCAGC
* * * *
19825040 ACGCAGAGGGGGACCCGGTCGATCCTTC-GCTTGCGCATGCCGCCCCTCTGGCCGACTGAGCGCC
765 ACGCAGAGGGGGACCCGATCGATCC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * *
19825104 TGCATGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCCAAGC
829 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
19825160 ATATGGAGTTCATCCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* * * * *
19825225 CG-GGATGTGCTGGTGCCGCATTTTT-TTGGCCAGGGCACCATCGCCG-G-ACCATCGGCGGT-A
66 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGAGAACCACCGACGGTAA
* * * * *
19825285 CTGGGCTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTACTGGTA
131 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
19825349 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGC
196 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
19825414 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GTAGACACTTTTTT
261 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG-AGACACTTTTTT
* **
19825478 CGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGCATGCCAAAAAA
325 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
19825543 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATTT-GAAAAAATTTTAAAAAATT
390 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-TTTCGAAAAAATTTTAAAAAATT
* *
19825607 CTTAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTC
454 CTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
19825672 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
519 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
19825737 ATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGTGTATCCCGTCTCTC
584 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* ** *
19825802 TGGCCT-GTG-AAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
649 TGGCGTAGTGCCCGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * **
19825865 TCCTAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGACAGCACGTTGAGGGGGA
714 TCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGAT-GGCAGCACGCAGAGGGGGA
* * * * *
19825930 CCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCACACGCTCGTTTT
778 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * **
19825995 GTGGCTTGACTTTGGCATACAAAGTTCATTCCCAGTCTAAGC
843 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *
19826037 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT-TCGGTAGTACATGCTGGGT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGT-GGCAGCACATGCTGGGC
* * * *
19826101 TCGAGCATGTTCTGGTGCCGCATTTTTCTTCGTTAGTGCACCATCGCCGAAGAACTTGACCGACG
65 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCG-AGAAC--CACCGACG
* * * * *
19826166 G-CATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGCTGTGCGCACATAATGTGTGATTGGTGC
127 GTAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGC
* * *
19826230 TGGTACTTGGCCCTCATATTGGCCCCCTATCTCTCATCAAACCTCGAAAACTCACACCCCCTTAA
191 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
19826295 AGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGCA-ACACT
256 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG-AGACACT
* *
19826359 TTTTTTAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
320 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
19826424 AAAAAAATACAAGGATCACATCTACAAAGTCTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
385 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAA
* * * ** *
19826489 AATCCCGACCCATAAAAAGTTTT-AAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
450 AATTCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
19826553 CTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
515 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
19826618 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATGCCGTC
580 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
19826683 TCTCTGCCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGGATA
645 TCTCT----GGCGTAGTGCCCG--TGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** * ** * *
19826748 CGGAGTTCATTCCCAGTCCAAGATCAGATTGGATGGAGGGTTGCGATAGTAGGATGGCTAGCATG
704 CGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATGGC-AGCACG
* * * * * **
19826813 CAGAGGAGGACCCGATCGATCCCCGGCTTGCGAATCCAGCCCCTTTGGCCGGTTGAATGCCCGCA
768 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
19826878 CGCTCGTTTCGTGGGTTGTCTTGGGCATACGGAGTTCATTCCCAGTCTAAGC
833 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * ** *
19826930 ATACGGAGTTCATTCCTAGTCTAATATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* * *
19826995 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
66 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCG-CCGAG-A--ACC-----AC
* * * * * * *
19827060 TTGACCAATGTAATTGGGGTTCCGACGATCGAGGGAGCCGAGGGGGTGTGCACACATGATGTGCA
122 -CGA-C--GGTAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
*
19827125 ATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
183 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
19827190 CCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
248 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
* **
19827255 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAATTGAATTTTTTTGTG
313 AGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** * * *
19827320 CGTGTGAACAAACATACAAGGATCATGTCTACCAAGTTTGGGG-CAAGAAATCC-TTCTGAAAAA
378 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA-AAATCCTTTC-GAAAAA
* *
19827383 ATTTTAAAAAA-TCTAGAACCGCAAAATG-TTTGAAAAATCGTGAAAAATATGAGAACGAGTCGT
441 ATTTTAAAAAATTCT-GAACCGCAAAAAGTTTTG-AAAATCGTGAAAAATA-GAAAACGAGTCGT
*
19827446 CTT-CCATGAAACTTCACGTGAAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCAT-AAAAT
503 CTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
19827509 GGCATTGGCA
567 GGCATTGGCA
19827519 CACNNNNNNN
Statistics
Matches: 2049, Mismatches: 238, Indels: 117
0.85 0.10 0.05
Matches are distributed among these distances:
868 1 0.00
869 183 0.09
870 15 0.01
871 6 0.00
873 3 0.00
874 2 0.00
875 5 0.00
876 34 0.02
877 309 0.15
878 23 0.01
879 19 0.01
880 2 0.00
881 17 0.01
882 3 0.00
884 21 0.01
885 189 0.09
886 277 0.14
887 7 0.00
888 32 0.02
889 198 0.10
890 7 0.00
891 1 0.00
892 2 0.00
893 284 0.14
894 3 0.00
896 1 0.00
899 2 0.00
900 2 0.00
901 1 0.00
902 10 0.00
903 263 0.13
904 76 0.04
905 51 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGAGAACCACCGACGGTAA
TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGAGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATTCT
GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCGTAGTGCCCGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATGGCAGCACGCAGAGGGGGACCC
GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19826932 original size:26 final size:26
Alignment explanation
Indices: 19826902--19826953 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19826892 GTTGTCTTGG
19826902 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19826928 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19826954 TATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19829080 original size:26 final size:26
Alignment explanation
Indices: 19829044--19829096 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19829034 GTTGACTTAG
*
19829044 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19829070 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19829096 G
1 G
19829097 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19830849 original size:26 final size:26
Alignment explanation
Indices: 19830813--19830865 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19830803 GTTGACTTAG
*
19830813 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19830839 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19830865 G
1 G
19830866 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19831736 original size:26 final size:26
Alignment explanation
Indices: 19831697--19831749 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19831687 GTTGACTTAG
* *
19831697 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19831723 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19831749 G
1 G
19831750 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:19832621 original size:26 final size:26
Alignment explanation
Indices: 19832592--19832644 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19832582 GTTGACTTAG
*
19832592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19832618 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
19832644 G
1 G
19832645 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:19833530 original size:26 final size:26
Alignment explanation
Indices: 19833494--19833545 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19833484 TGACTTAGGC
19833494 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
19833520 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
19833546 TCGGACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:19834429 original size:26 final size:26
Alignment explanation
Indices: 19834400--19834458 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
19834390 GTTGACTTAG
*
19834400 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19834426 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19834452 GCATACG
1 GCATACG
19834459 AATCGAGGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19836237 original size:26 final size:26
Alignment explanation
Indices: 19836201--19836256 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19836191 TGGGTTTACT
19836201 TAAGCATATGGAGTTCATTCCCAATC
1 TAAGCATATGGAGTTCATTCCCAATC
*
19836227 TAAGCATATGGAGTTCATTCCCATTC
1 TAAGCATATGGAGTTCATTCCCAATC
19836253 TAAG
1 TAAG
19836257 ATCGGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (26 bp):
TAAGCATATGGAGTTCATTCCCAATC
Found at i:19837263 original size:899 final size:899
Alignment explanation
Indices: 19828522--19840875 Score: 14872
Period size: 899 Copynumber: 13.9 Consensus size: 899
19828512 NNNNNNNNNN
* * * *
19828522 CAAAATCTTGTACACTTTGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAATAAAAACACAAGGA
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
19828587 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAA
66 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAA
* * *
19828652 AAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCG
131 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
19828717 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAGAAATATTAAGATA
196 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
*
19828782 TGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
261 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * * * * * ** *
19828847 GTGCCCGCCCGCTCGTCTGCTCATTTCATCGGTTGGTTTAGGAATGTGGAGTTCATTCCCAGTCT
326 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCT
* * * * * *
19828912 AAGAT-TGACCGGATCGAGGGTTACGGTAGCAAGG-TTGGCAGCATGCAG-GGGGGACCCAGA-C
391 AAGATCAGACTGGACCGAGGGTTACGGCAGC-AGGATCGGCAGCACGCAGAGGGGGACCC-GACC
* * * *
19828973 GATCCCCGGCTTGTGCACCCCGCCCCTCTGGCCGGCTGAGCGCCTGCAC-CTCGTATCGTGGGTT
454 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
19829037 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
519 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * *
19829102 ACCAGACCGAGGGTTGCGGTAGCAGATGCT-GGCTCGGGCATGTGCTGTTGTCGTATTTTTCTTT
584 ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * *
19829166 GTCAGGGCACCATTGTCAGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCAGCGATC
649 GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
* * * *
19829231 GGGGGGGCCGGGGGGTGTGCACAAATGATGTGCGAAGGGTGCTGGTGCTTGGCCCTTATATTGGC
714 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
19829296 CCCCTATCACTCA-CAAAACCTTGAGAA-TCAC-CACCCCTTAAAAGAACATTTGAGA-TTTACA
779 CCCCTATCCCTCATC-AAACCTCGAGAACTCACAC-CCCCTT-AAAGAGCATTTGAGATTTTACA
* * *
19829357 GGTTTGCTACCATGTAGCCATTAAGGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCA
841 GGTTTGCTGCCA-GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
19829417 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGA
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* ** * * *
19829482 TCACGTCTACCAAGTTTGGGGCCAAAAATCC-TTCTGAAAAAATTTTTCAAAATCCCAAACCATA
66 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCTCGAACCGTA
** *
19829546 AAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCC-TCGAAACTTCACGTGAAGG
130 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-GAAACTTCACGTGAAGG
19829610 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
194 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
19829675 TATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGCCGGCG
259 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * **
19829740 TAGTGCCCGCCCGCCTGCCCACTCGTTTCATCGGTTGGCTTAGGCATGTGGAGTTCATTTCCAGT
324 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGT
* * * * *
19829805 CTAAGATCAGACCGGATCGAGGGTTACGGCAGCAAGATTGGCAGCATGCAG-GGGGGACCCAGA-
389 CTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GAC
* * * * * *
19829868 CGATCCCCGGCTTGTGCACCCCGTCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTATCATGGGT
453 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
19829933 TGACTTAGG----C--A--T-A----C-G---AAG--T------TT-ATTCCCAGTCTAAGATCA
518 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * * * *
19829972 GATCGGACCGAGGGTTGTGGTACCAGATGTTGGGCTCGGGCATGTGCTGTTGTCGTATTTTTCTT
583 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * *
19830037 CGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGATCGACGTCATTGGGGTTCCGGTGAT
648 CGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGAT
* * * * **
19830102 CGGGGTGGTCGGGTGGGGTGTGCGCCCATGATGTACGATGGGTGCTGGTACTTCACCCTTATATT
713 CGGGG-GGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
19830167 GGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
776 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
19830232 GGTTTGCTTCTAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCA
841 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
19830291 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCGTGCCAACAAAAATACAAGGA
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * * *
19830355 TCATGTCTACCAAGTGTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAACTCCCGAACCGTAA
66 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAA
** * * * *
19830420 AAAGTTTTGAAATTCGTGAAAAATAGAAAACGAGTCGTCTTACCATTAAACTTCACGTGAAGGCT
131 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
19830485 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATA
196 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
*
19830550 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGCCGGCGTA
261 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * **
19830615 GTGCCCGCCCGCCTGCCCACTCGTTTCATCGGTTGGCTTAGGCATGTGGAGTTCATTTCCAGTCT
326 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCT
* * * * *
19830680 AAGATCAGACCGGATCGAGGGTTACGGCAGCAAGATTGGCAGCATGCAG-GGGGGACCCAGA-CG
391 AAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACCG
* * * *
19830743 ATCCCCGGCTTGTGCACCCCGCCCCTCTGGCCGGCTGAGCGCCTGCAC-CTCGTATCGTGGGTTG
455 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
19830807 ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
520 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* *
19830872 CCAGACCGAGGGTTGCGGCAGCACATGTTGGGCTCAGGCATGTGCTGGTG-C-CATATTTTCTTC
585 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT-TTTTCTTC
* * * * * *
19830935 AT-TGGGCACCATCGCCGGA--A--A-C------CCTGTCC-AGCGGCATTGGGGCTCCGGTGAT
649 GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGAT
* * *
19830987 C-GGGGGGTCGGGGGGTGTGCGCATATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG
713 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
19831051 CCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGG
778 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
19831116 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
843 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
19831173 CAAAATCTTGTACACTTTGAGTTTTAAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGA
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
19831238 TCACGTCCACCAAGTTTGGGGCCAAAA-TCCATCCGAAAAAATTTTAAAAAATCTTGAACCGTAA
66 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAA
* * *
19831302 AAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCG
131 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
19831367 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATA
196 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * *
19831432 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCACATCTCTCTGGCCGGTGTA
261 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * * * * * *
19831497 GTGCCTGCCTGCCTGTCCGCTCGTTTCATCGGTTGGCTTAGGCATGCGGAGATCATTCCCAGTCT
326 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCT
* * * ** * * * * *
19831562 AAGATCGGA-TCGGATCAAGGGTTGTGGTAGTAGGATCGACAGCATGCAGAGGGGGACCCGGCCG
391 AAGATCAGACT-GGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
* ** * * * * * *
19831626 ATCCTCGGCTTGCGCATCCTTCCCCTCTGGCCGACTGACCGCCCTCACGTTTGTTTTGTGGGTTG
455 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * *
19831691 ACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCGGA
520 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * *
19831756 CTGGACCGAGGGTTACGGCAACACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCG
585 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* ** * *
19831821 TCGGTGCACCATCGTCGGAG-A--A-C-TTG-ACC--A--G-CGGTATTAGGGGTTCCGGTGATC
650 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATT-GGGGTTCCGGCGATC
* * * * *
19831875 GGGTGGGTG-GGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCTCTGATAGTG
714 GGG-GGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
19831939 GCCCCCTATCCCTTATCAAACCTCGA-AACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAG
777 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
19832003 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
842 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
19832061 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGA
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
19832126 TCACGTCTACCACGTTTTGGGCCAAATCTCCTTTCGAAAAAATTTTTAAAAATC-CTGAACCGTA
66 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTC-GAACCGTA
* ** * *
19832190 AAAAGTTTCAAAATTTGTGAAAAATAGAAATCCCGAGTCGTCTTGCGATGAAACTTCACGTGAAG
130 AAAAGTTTCAAAAATCATGAAAAATAGAAA--ACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ***
19832255 GCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACATAGAAATATGAAG
193 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
19832320 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCTCATCCCGTCTCTCTGGCTGGC
258 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
19832385 GTAGTGCCCGCCCGCCCGCTTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCA-TT
323 GTAGTGCCCGCCCG-CC-C--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTT
* * * * * * * * *
19832449 CCTAGTCTAAGATC-GAATCGGACCTAGGGTTATGGCAACAAGATTGGCAGCATGTAGAGTGGGA
384 CC-AGTCTAAGATCAGACT-GGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * * *
19832513 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCGTCTGGCTGGCTGAGCGCCTGCATGCTCGTTTT
447 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
*
19832578 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGTCTA
512 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * * ** *
19832643 AGATCAGACTGGATCGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGCTGGCACCACATT
577 AGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * *
19832708 TTTCTTTGTCGGGGCACCATCATCGGAGCATCACTGGAGAACTTGACCGGCAGG-ATTGGGGTTC
642 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGAC-GGCATTGGGGTTC
*
19832772 CGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGCGCGATGGGTGCTGGTACTTGGCCCTT
706 CGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
19832837 ATATTGGCCCCCTATCCCTCATCAAACTTCAAGAACTCCCACCCCCTTAAAGAGCATTTGAGATT
771 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
19832902 TTACAGGTTTGCCGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
836 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
19832966 CAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGA
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
19833031 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTTAAAAATCCCGAACCGCAA
66 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAA
* *
19833096 AAAGTTTCAAAAATCATGAAAAATAGAAATCCCGAGTCGTCTTGCGATGAAACTTCACGTGAAGG
131 AAAGTTTCAAAAATCATGAAAAATAGAAA--ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
**
19833161 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA-AAATATGAAGA
194 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * *
19833225 TCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTGTCTGGCCGACG
259 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
19833290 TAGTGCCCACCCGTCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGT
324 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGT
* * * * * * *
19833355 CTAAGAT-TGAACTGGACCAAGGGTTATGGCAGCAAGATCGGCAGCATGCAGAGTGGGACCCGGC
389 CTAAGATCAG-ACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC
* * * * *
19833419 CGATCCCCGACTTGGGCATCCCGCCCCTTTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGGT
453 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
19833484 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCG
518 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** * ** ** * *
19833549 GACCGGACCAAGGGTTGCGATAGCACATACTGGGCTCAAGCATGTGCTGGCACCACATGTTTCTT
583 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
** * * * *
19833614 CACCAGGGGGACCATCAATAAGTCGAAGCATCGCCGG-GAGACTTGACCGACGGGCATTGGGGTT
648 CGTC-GGGGCACCATC-----GTCGGAGCATCACCGGAGA-ACCTGACCGAC-GGCATTGGGGTT
* *
19833678 CCGACGATCGGGGGGGCGGGGGGGGTGTGCGCACA-GATGTTGCGATGGGGTGCTGGTACTTGG-
705 CCGGCGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATG-TGCGAT-GGGTGCTGGTACTTGGC
* * *
19833741 CATTATACTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
767 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
19833806 G--TTTACAGGTTTGGCCCGCTAGTAG-CGTTAAAGTGTCTTAAATGGGGACATTTTTTTCAAAT
832 GATTTTACAGGTTT-G-CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
19833868 GGTCA
895 GGTCA
* * *
19833873 CAAAA-CTTGTACACTTCGA-TTTTTAGCTGACTTTTATTTGTTGCACGCCAACCAAAAGTACAA
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TTTG-TGCATGCCAA-CAAAAATACAA
* * *
19833936 GGATCATGTCTACCAAGTTTGGGGCCAAAA-TACCTTCCGAAAAAATTTTAAAAAATC-CAAACC
63 GGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTTCGAAAAAATTTTAAAAAATCTCGAACC
* * *
19833999 GTAAAAAGTTTCAAAAAT-ATGACAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACATGAA
127 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *** *
19834063 GGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGCATTGGCACATAGAGATATGAA
192 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * *
19834128 GATCTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGA
257 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
19834192 CGTAGTGCCCGCCTACCCGCCCGCCCGCTCATTTTGTCAGTTGGCTTAGGCATACGGAGTTCA-T
322 CGTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * *
19834256 TCCTAGTCTAAGATCAAACTGGACCAAGGGTTCCGGTAGTAGGATCGGTAGCACTCAGAGAGGGA
383 TCC-AGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * * * *
19834321 CCCGATCGATCCTCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCATGCTTGTTTC
447 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
19834386 GTTGGTTGACTTAGGCATACGGAGTTCATTCCGAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
512 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
19834451 AG--CATACGA-ATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTTGATGCCGCAT
577 AGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC-TGGTGCCGCAT
** * * *
19834513 TTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTT
641 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTC
* * *
19834578 CGGTGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCAGGTACTT-GCCCTT
706 CGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
19834642 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAATGAGCATTTGAGATT
771 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
19834707 TTACAGGTTTGTTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
836 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
**
19834771 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACACCAA-AAAAAGTACAAGG
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGG
* ** * * *
19834835 ATCACGTCTAGCAAGTTTTTGGCCAAAACTCCTTTC-AAAAAATTTTTTAAAAATCACGAACCGC
65 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA-TTTTAAAAAATCTCGAACCGT
* * *
19834899 AATAAGTTTCAAAATTCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGG
129 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
19834964 CATAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAA
194 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * **
19835029 TGTGCCTAAACCCACCTACCACCCTATAGATCCATGGCTTGCACATCCCATCTCTCTCACCGGCG
259 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* *
19835094 TAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTGAGGCATACGGAGTTCATTCCCAGT
324 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGT
* ** * * * * * ** * *
19835155 CTAAGATCATACCAGACCAAGAGTTATGGCAGCAGGATTGGCAGCACGTAGAGTAGGACCCGGCT
389 CTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
* * * * *
19835220 GATCCTCGGCTTGCGCATCCC-ACCCTCTGGTCGGCTGAGCGCCCGCTCGCTCATTTCGTGGGTT
454 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * *
19835284 GACTTATGCATACAGAGTTCATTCCCAGTTTGAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
519 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
*** * * * * * *
19835349 ATTGGACCGAGGGTTACGGCGGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTGTTA
584 ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * ** ** * *
19835414 GTCAGGGCACCATTG-CTGGAGCATTGCCGGAGAACCTGATTGGCGGCATTGGGGCTCCGGCGAT
649 GTCGGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGAT
* ** *
19835478 CGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGAACTTATATTAG
713 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
19835543 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
778 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
19835608 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT-GTCA
843 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * * *
19835664 CAAAATCTTGTACACTTCGATTTTTTTGAATGAA-TTTTTTGTGTATGCCAAAAAAAATACAAGG
1 CAAAATCTTGTACACTTCGAGTTTTTAG-CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
19835728 ATCACGTCTA-CAAATTTGGGGCCAAAAC-CCTTTCGAAAAAA-TTTAAAAAATCCCGAACC-CA
65 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTA
* ** * *
19835789 CAAAAGTTT-GAAAATCATGAAAAATAGAAAGTGAGTCATACTTGTCATGAAACTTCCACGTGAA
130 -AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT-CTTGCCATGAAACTT-CACGTGAA
* *
19835853 GGCTTAAGGGACCAATTGGTAATGGAATTTACAAGCCACAAATATGGCATTGGACATGCAGAAAT
192 GGCTTAAGGGACC-ATT-GT-AT-GAATTTACAAGCCATAAAAATGGCATTGG-CATGCAGAAAT
*
19835918 ATGGAAGATGTG-CTAAACCCAACCAACCACCCTAAGTCGATGCCAACGGCCTTGCGCATACCAC
252 AT-GAAGATGTGCCTAAACCC-ACCTACCACCCT-A-TCGAT-CC-ACGG-CTTGCGCAT-CC-C
* * * *
19835982 GTCTCTCTGGCCGGTGTACTGCCC-CCCCCCCGCCCCCGTTCCGTTTCGTCGGGTTGGGCTTAGG
308 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--CCCGCT-CGTTTCGTC-GGTT-GGCTTAGG
* * * * * * * * ** * *
19836046 CATCCAGAGTTCATTCCCATTCTAAGATCAGACCGGATCGAGTGTTGCCACAGCAGGATTGGCAA
368 CATACGGAGTTCATTTCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAG
* ** * * ** *
19836111 CACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCCGGCCGATTGAGTGCC
433 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * * * *
19836176 TGTACGCTCGTTTCGTGGGTTTACTTAAGCATATGGAGTTCATTCCCAATCTAAGCATATGGAGT
498 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * *
19836241 TCATTCCCATTCTAAGATCGGACCAGGCCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGT
563 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
*
19836306 GCTGGTGCCTCATTTTTCTTCG-CTGGGGCACCATCG-CTGGAGCATCACCGGAGAACCTGACCG
628 GCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGACCG
* * *
19836369 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTACGATGGGTGC
691 ACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
19836434 TGGTCCTTGGCCCTTATATTGGCCCCCTATCCGC-CATCAAACTTCAAGAACTCACACCCCCTTA
756 TGGTACTTGGCCCTTATATTGGCCCCCTATCC-CTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
19836498 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACT
820 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
19836563 TTTTTCAAATGGTCA
885 TTTTTCAAATGGTCA
* * *
19836578 CAAAATCCTGTACACTTCGAGTTTTTACCTGAATTGTTTTTGTGCACGCCAA-AAAAAGTACAAG
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAA-TACAAG
*
19836642 GATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTC-AAAAAATTTTTAAAAAATCTCGAACCG
64 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA-TTTTAAAAAATCTCGAACCG
* * *
19836706 CAATAAGTTTCAAAATTCATGAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
128 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * *
19836770 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATAAAG
193 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* **
19836835 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTAGC
258 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
19836900 ATAGTGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAA
323 GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAG
* ** * *
19836965 TCTAAGATTAGACTGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCAAC
388 TCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC
* * * *
19837030 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCCGCTGAGCGCTCGGACGCTCGTTTCATGGGT
453 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
19837095 TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCA
518 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
19837160 GACCAGACCGAGGGTTGCGGCAGCACATGCTGTGCTTGGGCATTTTCTGGTGCCACATTTCTCTT
583 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
** * *
19837225 CGTCGGGGCACCATCGTCGGAGCATTGCCGGAGAACCTGA-CTAGCGGCATTGGGGTTCCGACGA
648 CGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGA
* * *
19837289 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTACAATGGGTGCTGGTACTTGGCCCTCATATTG
712 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
19837354 GCCCCCTATCCCCCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
777 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
19837419 GTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
842 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* **
19837477 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAGGTACAAGGA
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
19837542 TCATGTCTACCAAGTTTGGGGCCAAAACACC-TTCCAAAAAATTTTAAAAAAATCCCGAACCGCA
66 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT-AAAAAATCTCGAACCGTA
* * * * *
19837606 ATAAGTTTCGAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCTATGAAACTTCACGTGAAGGC
130 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* ** * *
19837671 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACACAAAAATATAAAGAT
195 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * *
19837736 GTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCAT
260 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* *
19837801 ACTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
325 AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTC
** ** * * * *
19837866 TAAGATCAGA-TCAAACTAAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACC
390 TAAGATCAGACT-GGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
* * * * * * *
19837930 GATCGCTGGCTTGCGCATCCCGCCCCTCTGGGCGGCTAAGCGCCTGCATGCTCATTTCGTGGGTT
454 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
19837995 GACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-----AG-----G-T---
519 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * *
19838034 ACCAGACCGAGGGTTACGACAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTCTTCTTC
584 ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * * *
19838099 ACCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCTGGCGATC
649 GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
* * * *
19838164 GGGGGGACCGGGGGGGTGTGCGCACATAATGTGTGATGGGTGCTGCTACTTGGCCCTTATATTGG
714 GGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
19838229 CCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAAG
778 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
19838294 TTTGTTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACAC-TTTTTCGAATGGTCA
843 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * * *
19838350 CAAAATCTTGTACACTTCGGGTTTTTATCTAAATTTTTTCGTGCATGCCAACAAAAATAAAAGGA
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
19838415 TCACGTCTACCAGGTTTGGGCCCAAAATTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAA
66 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAA
** * * *
19838480 AAAGTTTTGAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCT
131 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
19838545 TAAGGGACCACTGTATGAATTTACAAGCCATAAAAAGGGCATTGGCATGTAGAAATATGAAGATG
196 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* *
19838610 TGCCAAAACCCACCTACCACCCTATCGATCCACGGGTTGCGCATCCCGTCTCTCTGGCCGGCGTA
261 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* *
19838675 GT----GCCCGCCCGCTCGCTCGTTTCAT-GAGTTGGCTTAGGCATACGGAGTTCA-TTCCTAGT
326 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG-GTTGGCTTAGGCATACGGAGTTCATTTCC-AGT
* * * * * * **
19838734 CTAAGATCAGACTAGACCGAAGGTTGCGGCAGCAGGTTCGGTAGCACGCAGAGGAGGACCCGGTC
389 CTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
* * *
19838799 GATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
454 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
19838864 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGTGTTCATTCCCAATCTAAGATCAG
519 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * * * *
19838929 ACTGGATCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTT
584 ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * *** * * * *
19838994 GTCAGGGCACCATCGCCGAAGCATTGTCGAAGAGCCTGACCGGCGGCATTAGGGTTCCGGCGATC
649 GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
* *
19839059 GGGGGGGCCAGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGC
714 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
19839124 CCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAAGT
779 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
19839189 TTGCTTCTAGTAGCCATTAAACTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
844 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
19839245 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
19839310 TCACGTCTACCAAGCTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCTCAAACCGCA
66 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCTCGAACCGTA
** ** * * * *
19839374 AAAAGTTTTGAAAATTGTGAAAAATAAAAAAACGAGTCGTCTTGGCATGAAACTTCATGTGAAGA
130 AAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
19839439 ATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGA
194 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
19839504 TGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTG
259 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
19839569 TAGTGCACGCCCGCCCCCCCGCCCGTTCGTTTCGTCGGCTGGCTTAGGCATACGGAGTTCA-TTC
324 TAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTC
* * * ** *
19839633 CAAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGATAGCACACAGAGGGGGACC
385 C-AGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * ** * * * *
19839698 CGACCGATCCCTGGCTTGCACATCTCGCATCT-TCGACCGGCTTAGCACCCGTACGCTCGTTTCG
449 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * ** * *
19839762 CGGGTAGACTTAGGCATACAGAGTTCATTTGCAGTCT-AGGAT--TG-G---A---CC-G-----
513 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19839811 GAT-----C--A---AGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTT
578 GATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
** * * * *
19839866 TTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGATAACCTGACCGGCGGCACTGGGGTTCCG
643 TTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* *
19839931 ACGATCGGGGTGGCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
708 GCGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
19839996 TACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCCGCCTTAAAGAGCATTTGAGATTT
772 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
19840061 TACAGGTTTACTTCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCA
837 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * * * * *
19840124 CAAAATATTGTACACTTCAACTTTTCAGCTAAATGTTTTTGTGCATGCCAACATAAATACAAGGA
1 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
19840189 TCACGTCTACCAAGCTTGGGTCCAAAACTCC-TTCTAAAAAAATTTTAAAAAATCTCGAACCGTA
66 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCTCGAACCGTA
19840253 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
130 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * * *
19840318 TTAAGGGGCCATTATACGAATTTACAAGCCATAAAAATGGTATTGGCA-ACAGAAATATGAAGAT
195 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
** ** ** * *
19840382 GTGCCTAAATTCAGCCATA-CACCCTATCGATCCACCACATACCCGGAT-CCGTCTCTCTGGTCG
260 GTGCCTAAACCCA-CC-TACCACCCTATCGATCCACGGC-T-TGCGCATCCCGTCTCTCTGGCCG
* * *
19840445 GCATAGTGCCGCGCCAACCGCTCGCCTCGCTCATTTCGTC-GTTGGCTTAGGCATACGGAGTTTC
321 GCGTAGTGCC-CG-C--CCGCCCGCC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG-TTC
** * *
19840509 ATCGCCAGTCTAATGATC-GAC-AGACCGAGGGTTGCGG-AGCAGGATCGAAG-AGCACGCCA-A
380 ATTTCCAGTCTAA-GATCAGACTGGACCGAGGGTTACGGCAGCAGGATCG--GCAGCACG-CAGA
* * * * * * * *
19840569 -GGGGA-CCGATCGAT-CCCGACTTTGGCGCATAACCG-CCCTCCGACGGGCTGAGCACCCGCAT
441 GGGGGACCCGACCGATCCCCGGC-TT-GCGCAT-CCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
19840630 GCTCATTTC--------AC-T-GG--T--TGA---C-TT---AG-----GCATACGGAGTTCATT
503 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *
19840669 CCCAGTCTAAGATCAGACC-GAACCGAGGGTTGCGGTAGCACATGCTGGGCACGGGCATGTGCTG
568 CCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
** * * * *
19840733 GTGCCATATTTTTCTTCTTCGGGGCACCATC-ACTGGAGCATCACCGGAGAACCTAACCGACGGT
632 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGACCGACGGC
* * ** * * *
19840797 ATTGGAGTTTCGATGATC-GAGGGGCAGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGAT
696 ATTGGGGTTCCGGCGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
19840860 ACTTGGCCCTTATATT
760 ACTTGGCCCTTATATT
19840876 TGCTTCCAGT
Statistics
Matches: 10017, Mismatches: 1164, Indels: 575
0.85 0.10 0.05
Matches are distributed among these distances:
853 3 0.00
855 1 0.00
856 1 0.00
857 2 0.00
859 1 0.00
860 2 0.00
861 1 0.00
862 2 0.00
863 1 0.00
864 2 0.00
866 1 0.00
868 9 0.00
869 185 0.02
870 3 0.00
871 45 0.00
872 116 0.01
873 851 0.08
874 326 0.03
875 33 0.00
876 32 0.00
877 67 0.01
878 364 0.04
879 368 0.04
880 35 0.00
881 9 0.00
882 510 0.05
883 107 0.01
884 122 0.01
885 35 0.00
886 24 0.00
887 18 0.00
888 183 0.02
889 162 0.02
890 40 0.00
891 282 0.03
892 143 0.01
893 183 0.02
894 331 0.03
895 924 0.09
896 308 0.03
897 191 0.02
898 262 0.03
899 1043 0.10
900 355 0.04
901 32 0.00
902 13 0.00
903 29 0.00
904 491 0.05
905 440 0.04
906 92 0.01
907 121 0.01
908 368 0.04
909 22 0.00
910 28 0.00
911 22 0.00
912 121 0.01
913 370 0.04
914 37 0.00
915 34 0.00
916 44 0.00
917 20 0.00
918 32 0.00
919 18 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAA
AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCT
AAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
Found at i:19838901 original size:26 final size:26
Alignment explanation
Indices: 19838871--19838923 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19838861 GTTGACTTAG
*
19838871 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19838897 GCATACGGTGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19838923 G
1 G
19838924 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19841476 original size:26 final size:26
Alignment explanation
Indices: 19841440--19841492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19841430 GTTGAATTAG
19841440 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19841466 GCATGCGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19841492 G
1 G
19841493 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19843013 original size:876 final size:882
Alignment explanation
Indices: 19841584--19844057 Score: 3115
Period size: 898 Copynumber: 2.8 Consensus size: 882
19841574 ATCGTCGGAG
* * * * *
19841584 CATCGCCAGAGCATCGTCGGAGAACCTGACCGACGACATTGAGGTTCTGACGATCAGGGGGCCGG
1 CATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCTGACGATCGGGGGGGCGG
* *
19841649 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTA-TCG
66 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATTC-
* * * *
19841713 CTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGATATTTTACAGTTTTGCTGCCAA
129 CTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
19841778 TAGCAATTAAAGTGTCCTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
194 TAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
19841843 AGTTTTTAGCTGAATTTTTTTGTGTATACCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
259 AGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
19841908 GCCCAAAAATCCATCCGAAAAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
324 GGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGT-AAAAGTTTAAAAAATCATGA
* * *
19841973 AAAATAG-AAACAAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAATGGACCATTGTATGAA
388 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
19842037 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
453 TTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
19842102 GCCTATCGATCCACGGCTTGCACATCCCTTCTCTCTGGCCAGCGTAGTGCCCCACCGCCCGCCCG
518 CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCC-CCGCCCGCCCG
* * ** *
19842167 CCCGCTCGTTTAATCGATTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGAC
582 CCCGCTCGTTTAGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGAC
* * *
19842232 TGAGGGTTGCAGCAGCAGGAATGACAGCACACAGAGGGGGACCCGATCGATCCCCGACTTGCGCA
647 TGAGGGTTGCAGCAGCAGGAATGGCAGCACACAGAGGGGGACCCGATCGATCCCCGACTTACGAA
*
19842297 TCCCGCCCCTCC-GATCGGC-GAGC-ACCCGCACGCTCGTTTCGCGGGTTGACATAGGCATAAGA
712 TCCCGCCCCTCCGGCT-GGCTGAGCGA-CCGCACGCTCGTTTCGCGGGTTGACATAGGCATAAGA
* * *
19842359 AGTTCATTCCCTA-TCTAAG-AT-C-AG-A-C-C-G-G-ACTGA-GGTTAC-GATAGCACATGCT
775 AGTTCATT-CATAGTCTAAGCATACAAGTATCACAGAGAACCGAGGGTTACAG-CAGCACATGCT
* *
19842412 GGGCTCAGGCATGTGCTGGCAACGCATTTTTCTTCGTCGGGGCAC
838 AGGCTCAGGCATGTGCTGGCAACGCATTTTTCTTCGTCGAGGCAC
* **
19842457 CATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGGTGATCGGGGGGGCGG
1 CATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCTGACGATCGGGGGGGCGG
* *
19842522 GGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCTCCTATTCC
66 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATTCC
* *
19842587 TCATCAAACCTCGAGAACTCACATCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCTAG
130 TCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
19842652 TAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
194 TAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
19842717 AGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
259 AGTTTTTAGCTGAATTTTTTTATGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
19842782 GGGGCAAAAATCCTTTCTAAAAAATTTTAAAAAATCTTGAACCGTAAAAGGTTTAAAAAATCGTG
323 GGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAA-GTTTAAAAAATCATG
* *
19842847 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCATT-AGGGGCCATTGTATG
387 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATG
* *
19842911 AATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATGTGAAGATATGCCTAAACCCACCTAC
451 AATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
19842976 CACCCTATCGATCCACGGCTTCCGCATCCCATCTCTCTGGCCGGCGTAGT-------GCCCGCCC
516 CACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCC
* * * * *
19843034 ACCCGCTCGTTTCGTCGGTTGGATTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
581 GCCCGCTCGTTTAGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGA
** * * * * * *
19843099 CCAAGGGTTG-TGACAGCAGGATTGGCAGCATACAGAGAGGGACCCGACCGATCCCTGACTTACG
646 CTGAGGGTTGCAG-CAGCAGGAATGGCAGCACACAGAGGGGGACCCGATCGATCCCCGACTTACG
* * ** * * * * *
19843163 AATCCTGCCCCTCTGGCTGGCTGAGCGAGTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGG
710 AATCCCGCCCCTCCGGCTGGCTGAGCGACCGCACGCTCGTTTCGCGGGTTGACATAGGCATAAGA
19843228 AGTTCATTCATAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATAAGAACAAACCGAGGGTT
775 AGTTCATTCATAGTCTAAGCATACA-AG-T-A--T-CA--C--AG---AG----AACCGAGGGTT
* ** *** *
19843293 GCAGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCAC
823 ACAGCAGCACATGCTAGGCTCAGGCATGTGCTGGCAACGCATTTTTCTTCGTCGAGGCAC
** * * *
19843353 CATCGTTGGAGCATC-CTCGGAGAACCTGACCGGCGGCATTTGGGTTCTGACGATCGGGAGGGCC
1 CATCGCCGGAGCATCGC-CGGAGAACCTGACCGACGACATTGGGGTTCTGACGATCGGG-GGG--
* * * * *
19843417 GAGGGGGGGTGTGCACACATGATGTGCAATGGGTGCCT-ATACTTGGCCCTTATATAGGCCCCGT
62 GCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG-CTGGTACTTGGCCCTTATATTGGCCCC-T
* * * * *
19843481 ATCCCTCATCAAACCTCGAGAACACACACCCCGTCAAAAAGCATTTGAGATTTTACAAGTTTGCT
125 ATTCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
19843546 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACA
189 GCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
19843611 CTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGGTCACATCTACTAAG
254 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * *
19843676 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAACAATCCTGAACCGCAAGAAGTTTTAAAAAT
319 TTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAA-AAGTTTAAAAAAT
*
19843741 CATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
383 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
19843806 ATGAATTTTCAAGCCATAAAAATGGCATTGGCACAT--AGAAATATGAAGCTGTGCCTAAACCCA
448 ATGAATTTACAAGCCATAAAAATGGCATT-GC-CATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * **
19843869 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGTGTAGTGCCCGCCCAT
511 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCC-CCCGC
* * * **
19843934 CCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATT-ATCAATCTAAGATTG
575 CCGCCCGCCCGCTCGTTTAGTCGGTTGGCTTAGGCATATGGAGTTCATTCCT-AGTCTAAGATCA
* * *
19843998 GACCGGA-TCGAGGGTTGCAGCAGTAGG-ATCGGTAGCACGCAGAGGGGGACCCGATCGATC
639 GACCGGACT-GAGGGTTGCAGCAGCAGGAAT-GGCAGCACACAGAGGGGGACCCGATCGATC
19844058 GTTGGCTTAC
Statistics
Matches: 1379, Mismatches: 159, Indels: 93
0.85 0.10 0.06
Matches are distributed among these distances:
867 1 0.00
868 132 0.10
869 50 0.04
870 3 0.00
871 1 0.00
872 2 0.00
873 136 0.10
874 132 0.10
875 91 0.07
876 155 0.11
877 2 0.00
880 1 0.00
883 1 0.00
886 1 0.00
890 1 0.00
895 5 0.00
896 100 0.07
897 6 0.00
898 248 0.18
899 205 0.15
900 5 0.00
905 1 0.00
906 99 0.07
907 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (882 bp):
CATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCTGACGATCGGGGGGGCGG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATTCCT
CATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAGTTTAAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCG
CTCGTTTAGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAG
GGTTGCAGCAGCAGGAATGGCAGCACACAGAGGGGGACCCGATCGATCCCCGACTTACGAATCCC
GCCCCTCCGGCTGGCTGAGCGACCGCACGCTCGTTTCGCGGGTTGACATAGGCATAAGAAGTTCA
TTCATAGTCTAAGCATACAAGTATCACAGAGAACCGAGGGTTACAGCAGCACATGCTAGGCTCAG
GCATGTGCTGGCAACGCATTTTTCTTCGTCGAGGCAC
Found at i:19843268 original size:26 final size:26
Alignment explanation
Indices: 19843220--19843272 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19843210 GTTGACTTAG
* *
19843220 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
19843246 GCATACAGAGTTCATTTC-CAGTCTAA
1 GCATACAGAGTTCA-TTCACAGTCTAA
19843272 G
1 G
19843273 ATAAGAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:19845018 original size:26 final size:26
Alignment explanation
Indices: 19844982--19845034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19844972 GTTGACATGG
*
19844982 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
19845008 GCATACAGAGTTCATTTCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19845034 G
1 G
19845035 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19845238 original size:93 final size:93
Alignment explanation
Indices: 19845078--19845262 Score: 352
Period size: 93 Copynumber: 2.0 Consensus size: 93
19845068 TTGGACTCGG
19845078 GCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCACTGGAGCATCACAGGAGAACCTG
1 GCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCACTGGAGCATCACAGGAGAACCTG
19845143 ACCGTTGGCATTGGGGTTCCGGCGATCA
66 ACCGTTGGCATTGGGGTTCCGGCGATCA
* *
19845171 GCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCACTGGAGCATCGCAGGAGAACTTG
1 GCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCACTGGAGCATCACAGGAGAACCTG
19845236 ACCGTTGGCATTGGGGTTCCGGCGATC
66 ACCGTTGGCATTGGGGTTCCGGCGATC
19845263 GGGGGGGCCC
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 90 1.00
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.26
Consensus pattern (93 bp):
GCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCACTGGAGCATCACAGGAGAACCTG
ACCGTTGGCATTGGGGTTCCGGCGATCA
Found at i:19845964 original size:26 final size:26
Alignment explanation
Indices: 19845927--19845979 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19845917 GTTGACTTAG
19845927 GCATACAGAGTTCATTCCCT-GTCTAA
1 GCATACAGAGTTCATT-CCTAGTCTAA
19845953 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCTAGTCTAA
19845979 G
1 G
19845980 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:19846849 original size:26 final size:26
Alignment explanation
Indices: 19846819--19846870 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19846809 TTGACTTAGA
*
19846819 CATATAGTGTTCATTCCCT-GTCTAAG
1 CATATAGAGTTCATT-CCTAGTCTAAG
*
19846845 CATATGGAGTTCATTCCTAGTCTAAG
1 CATATAGAGTTCATTCCTAGTCTAAG
19846871 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (26 bp):
CATATAGAGTTCATTCCTAGTCTAAG
Found at i:19847608 original size:894 final size:887
Alignment explanation
Indices: 19845759--19849783 Score: 4761
Period size: 901 Copynumber: 4.5 Consensus size: 887
19845749 GTTTTGTTGG
* * * * *
19845759 TTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTACGGCAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCAGTAGCA
* ** * * * * * * *
19845824 AGATCAGCAGCACGCAGAGAGGGACCC-AGCAGATCCCCAGCTTGTGAATCCCACCCCTCTGGTC
65 GGATTGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * **
19845888 GGCTCAATGCACACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
129 GGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
* * * *
19845953 GCATACGAAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCACATGCCTTG
194 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGACTGAGGGTTGCGACAGCACATG-CTTG
* * * *
19846018 GCTTGGGCATGTGCTGGTGTCGTATTTTTCTTC-GCTGGGGCACCATCATCGGAGAACCTGACCG
257 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATC-GGGGCACCGTCATCGGAGAACCTGACCG
* * * *
19846082 ACGGCATTGGGGTTCCAACGAT-TGGGGGGCCGGGGGGTGTGCGCACATGATGAGCGATGGGTGC
321 ACGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
**
19846146 TGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
386 TGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
* * *
19846211 GGAGCATTTGACATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTT
450 AGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
19846276 TTTTCAAATGGTCACAAAATCTCGTACACTTCGTGTTTTTTGCTGAATTTTTTTGTGCATGCCAA
515 TTTTCAAATGGTCACAAAATCTCGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** *
19846341 AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAGAATTTTAAAAA
579 AAAAAATACAAGGATCATGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
19846406 ATCCTGAACCGTAAAAATTTTCAAAAA-CGTGAAAAATAGAAAAGAAGTCATCTTGCCATGAAAC
644 ATCCTGAACCGTAAAAATTTT-AAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAAC
* * * *
19846470 TTCACGTGATGGCTTAAGGGACCATTGTATGAATTTAGAAGCAATAAAAATGGCATTGGCAGGCA
708 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
19846535 TAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCT
773 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCT
* * * * ** *
19846600 CTCTTG-TCGACGTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTTGTCGG
838 CTCTGGCT-GACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGA
*
19846650 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGTAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCAGTAGCA
* * *
19846715 GGATTGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCC-CCCCATCTGGCC
65 GGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC-TCTGGCC
* * * * *
19846779 GGCTGAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGACATATAGTGTTCATTCCCTGTCTAA
129 GGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
* * * * * *
19846844 GCATATGGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTACGACAGCACATGCCTTC
194 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGACTGAGGGTTGCGACAGCACATG-CTTG
* *
19846909 GCTCGGGCTTGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCGTCATCGGAGAACCTGACCGA
257 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCGTCATCGGAGAACCTGACCGA
* * *
19846974 CGACATTAGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGAGCGATGGGTGCT
322 CGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
19847039 GGTACTTGGCCCTTATATTGGCCACCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
387 GGTACTTGGCCCTTATATTGGCC-CC-TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
*
19847104 AGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTT
450 AGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
19847169 TTTTCAAATGGTCACAAAATCTCGTACACTTCATGTTTTTTGCTGAATTTTTTTGTGCAAGCCAA
515 TTTTCAAATGGTCACAAAATCTCGTACACTTCA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** * *
19847234 AAAAAATTCAAGGATCATGTCTACCAAGTTTCGCATCAAAACGCCTTCCAAAAAAATTTTAAAAA
579 AAAAAATACAAGGATCATGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
19847299 ATCCTGAACCGTAAAAAGTTTTTAAAATCATGAAAAATAGAGAACAAGTCGTCTTGCCATGAAAC
644 ATCCTGAACCGTAAAAA-TTTTAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAAC
* *
19847364 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACACA
708 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * ** * *
19847429 GAAAGATGAAGATGTGCCTAAGCCCATGTGCCACCCTATCGATCCACAGCTTGCGCATCCCATCT
773 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCT
* * * *
19847494 CTTTGGCTGGCGTAGTGCCCGCCCGTCCGCCTGCCCGCTCATTTCATCGA
838 CTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGA
* * *
19847544 TTGGCTTAGGCATACGAAGTTCATTCCCAGTTTAAGATCAGACCAGATCGATGGTTGCAGTAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCAGTAGCA
* * * * * *
19847609 GGATTGGCAGCACGCAAAGAGGGACTCAATCGATCCCCGGCTTGCGCATCCCGCTCCTCTGGCCG
65 GGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
19847674 GCTGAGTGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
130 GCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAG
* * *
19847739 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGATAGCACATG-TTGGG
195 CATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGACTGAGGGTTGCGACAGCACATGCTT-GG
* *
19847803 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
258 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCA-C--CGT-----CAT---CGGAGA
* *
19847868 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-C------TGTGCGCACATGATGTGC
312 ACCTGACCGACGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
19847926 GATAGGTGCTGGTACTTGGCCCTTATATTGGCCTCGTATCCCTCATCAAACC-TGAGAACTCACA
377 GATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTTGAGAACTCACA
* * *
19847990 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
441 CCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19848055 GGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTGT
506 GGGACACTTTTTTCAAATGGTCACAAAATCTCGTACAC-TTCAGTTTTTAGCTGAATTTTTTTGT
* * * *
19848119 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTTCTTCCGAAAAAA
570 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAA
** * * * *
19848184 TTTTAAAAAATCCCAAACCGTAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGT
635 TTTTAAAAAATCCTGAACCGTAAAAATTTTAAAAATCATGAAAAATAGAAAACAAGTCATCTTGC
*
19848249 CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
700 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * **
19848314 GGCACGTAGAAATATGAATATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
765 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * * *
19848379 TCCCGTCTCTCTATCT-AGCGTAGTGCCTGCCCGCCCACCCGCCTGCCCGTCTGCTCGTTTCATC
830 TCCCATCTCTCTGGCTGA-CGTA--G--TGCCCGCCCGCCCGCCCG-CC--C-GCTCATTTCATC
19848443 GA
886 GA
* * * * *** * * * * * *
19848445 TTGGCTTAGGCATATGGAGTTCATTCCTAGCCTAAGATCATATTGGATCAAGGTTTACTGCAACA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCAGTAGCA
* ** *
19848510 GGATTGACAGCACGCA-ATGGGGGACCCGAATGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
65 GGATTGGCAGCACGCAGA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
** * *
19848574 GGCTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
129 GGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
* * * * *
19848639 GGATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGTGGGTTGCGACAACACATGCTGGG
194 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAC-AGACTGAGGGTTGCGACAGCACATGCTTGG
* * * * * *
19848704 CTCGGGCATGTGCAGGTGCTGCATTTTTCTTCATTGGGACACCATCGCCGAAGCGTCGTCGAAGA
258 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCA-C--CGTC--A---TCG--G-AGA
* ** * * * * * *
19848769 ACCTGACCGGCGATGTTGGGGTTCCGGCGAACGGGAGGGCCAGGGGGTGTGCACACATGATGTGT
312 ACCTGACCGACGACATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
19848834 GATGGGTGCCGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAAA
377 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
19848898 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
441 CCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19848963 GGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAAGTTTTTTGT
506 GGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTC-AGTTTTTAGCTGAATTTTTTTGT
* * *
19849028 GCATGCCAAAAAAGATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
570 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAA
* ** * * * **
19849093 TTTAAAAAAATCCTGAACCACAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTG
635 TTTTAAAAAATCCTGAACCGTAAAA-ATTTTAAAAATCATGAAAAATAGAAAACAAGTCATCTTG
* *
19849158 CCATGAAACTTCACGCGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
699 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
19849223 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTTGATCCACGGCTTGCGC
764 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * ** *
19849288 ATCCCGTCTCTCTGGCAGACGTAGTGCCCGCTCGCCCGCCCGCCCACTCATTTTGTCGG
829 ATCCCATCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGA
* * * ** ** ** *
19849347 TTGGCTTACGCAT-TGGAGTTCATTCCCAGTCTAAAATTGGACTGGACTGAGGGTTGTGGTAGTA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCAGTAGCA
* * * * * ** * * * *
19849411 GGATCGACAGTATGTAGAGGGGGACCCAGTTC-ATCCTCGGCTTGCGCATCTCGCCCGTCTGGCT
65 GGATTGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
19849475 GGCTGAGTGCCTGTACGCTCCTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATT-CCTAGTCT
129 GGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCT-GTCT
* * * * * *
19849538 AAGCATACGGAGTTCATTTCCATTCTAAGATCGAACTAGACCGAGGGTTGTGGCAGCACATGCTA
192 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC-AGACTGAGGGTTGCGACAGCACATGCTT
* ** *
19849603 GGCTCGGGCATGTGCTGGTGCCGTATTTGTCTTCGCCGAGGCACCATTGTTAGAGCATCATCGGA
256 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACC---------G--TCATCGGA
* * * * * * *
19849668 GAACCTAACCGGC-AGCATTGGGGTTTC-GACGATCGGGGGGTCGGGGGGGTGTGCACGCATGAT
310 GAACCTGACCGACGA-CATTGGGGTTCCAG-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * *
19849731 GTGCTATGGGTGCTGGCACTTGGCCCTTACATTGGCTCCCTATCCCTCATCAA
373 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAA
19849784 NNNNNNNNNN
Statistics
Matches: 2712, Mismatches: 344, Indels: 145
0.85 0.11 0.05
Matches are distributed among these distances:
890 4 0.00
891 298 0.11
892 68 0.03
893 439 0.16
894 500 0.18
895 126 0.05
896 23 0.01
897 66 0.02
898 6 0.00
900 13 0.00
901 599 0.22
902 54 0.02
903 2 0.00
904 45 0.02
905 2 0.00
906 15 0.01
907 34 0.01
908 159 0.06
909 89 0.03
910 169 0.06
911 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCAGTAGCAG
GATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
CTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGAACAGACTGAGGGTTGCGACAGCACATGCTTGGCTC
GGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCGTCATCGGAGAACCTGACCGACGAC
ATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
TTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTCGTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
ACAAGGATCATGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
ACCGTAAAAATTTTAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCT
GACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGA
Found at i:19847749 original size:26 final size:26
Alignment explanation
Indices: 19847713--19847763 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19847703 TTGACTTAGG
19847713 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
19847739 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
19847764 GATCAGACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:19848649 original size:26 final size:26
Alignment explanation
Indices: 19848615--19848665 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19848605 TGACTTAGGC
19848615 ATACAGAGTTCATTCCCAGTCTAAGG
1 ATACAGAGTTCATTCCCAGTCTAAGG
*
19848641 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19848666 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:19851635 original size:26 final size:27
Alignment explanation
Indices: 19851599--19851652 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
19851589 GTTGACTTAG
* *
19851599 GCATATGGAGTTCA-TTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAATCTAA
19851625 GCATACGGAGTTCATTTCCCAATCTAA
1 GCATACGGAGTTCATTTCCCAATCTAA
19851652 G
1 G
19851653 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (27 bp):
GCATACGGAGTTCATTTCCCAATCTAA
Found at i:19852517 original size:26 final size:29
Alignment explanation
Indices: 19852488--19852544 Score: 93
Period size: 26 Copynumber: 2.1 Consensus size: 29
19852478 GGTTGACATT
19852488 AGGCATACGGAG-TTCATT-CCA-GTCTA
1 AGGCATACGGAGCTTCATTCCCAGGTCTA
19852514 AGGCATACGGAGCTTCATTCCCAGGTCTA
1 AGGCATACGGAGCTTCATTCCCAGGTCTA
19852543 AG
1 AG
19852545 ATCGGACTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 12 0.43
27 6 0.21
28 3 0.11
29 7 0.25
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (29 bp):
AGGCATACGGAGCTTCATTCCCAGGTCTA
Found at i:19853457 original size:26 final size:26
Alignment explanation
Indices: 19853421--19853472 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19853411 TGACTTAGGC
19853421 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
19853447 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
19853473 TCGGACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:19854351 original size:26 final size:26
Alignment explanation
Indices: 19854322--19854379 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
19854312 GTTGACTTAG
*
19854322 GCATACAGAGTTCATTCCGAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
19854348 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19854374 GCATAC
1 GCATAC
19854380 GGATCGAGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19856134 original size:26 final size:26
Alignment explanation
Indices: 19856101--19856156 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19856091 TGGGTTTACT
*
19856101 TAAGCATATGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
*
19856127 TAAGCATACGGAGTTCATTCCCATTC
1 TAAGCATACGGAGTTCATTCCCAATC
19856153 TAAG
1 TAAG
19856157 ATCGGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:19856141 original size:898 final size:899
Alignment explanation
Indices: 19850790--19862523 Score: 13369
Period size: 898 Copynumber: 13.2 Consensus size: 899
19850780 NNNNGACTCG
* * * * ** *
19850790 GGCATGTGCTGTTGTCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGGAGAACTT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
* * * * * * *
19850855 GACCGACGTCATTGGGGTTCCGGTGATCGGGGTGGTCGGGTGGGGTGTGCGCCCATGATGTACGA
66 GACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GGGCCGG-GGGGTGTGCGCACATGATGTGCGA
** * *
19850920 TGGGTGCTGGTACTTCACCCTTATATTGGCCCCATATCTCTCATCAAACCTCGAGAACTCACACC
129 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
***
19850985 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTTTAGTAGCCATTAAAGTGTCTGAAATGGG
194 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19851050 GACACTTTTTTC--ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
259 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
19851113 GTGCCAACAAAAATACAAGGATCATGTCTACCAAGTGTGGGGCCAAAACTTCTTCCGAAAAAATT
324 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
19851178 TTAAAAACTCCCGAACCGTAAAAAGTTTTGAAATTCGTGAAAAATAGAAAACGAGTCGTCTTGCC
389 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
19851243 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-
454 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
19851307 GCACACAGAAATATGAAGATTGTGCCTAAAACCCACTTACCACCCTTATCGATCCACGGCTTGCG
519 GCACACAGAAATATGAAGA-TGTGCCT-AAACCCACCTACCACCC-TATCGATCCACGGCTTGCG
* * * * * *
19851372 CAT-CCGTCTCTCT-GCC-GCGTTAGATGCCTG-CCGCGCTG-TCGCTCG-TTCATTAGTTTGGC
581 CATCCCGTCTCTCTGGCCGGCG-TA-CTGCCCGCCCGC-CCGCCCGCTCGTTTCGTCAG-TTGGC
* * * * *
19851431 TATAGGCATGCGGAGTTCGATTCCCAAGGTCTACAGATCGGGA-TCGGATCAAGGGTTGTGGTAG
642 T-TAGGCATACGGAGTTC-ATTCCC-A-GTCTA-AGATC-AGACT-GGACCGAGGGTTGTGGCAG
* * * * * * **
19851495 TAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTACGCAT-CCTTCCCTCTGGC
700 CAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
19851559 CGAACTGGACCGCCCGCACGCTCGTTT-GT-GGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
765 CG-GCT-GAGCGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
19851622 TAAGCATACGGAGTTCATTTCCCAATCTAAGATCGGACTGGACCGA-GGTTGCGGCAACACATGC
828 TAAGCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
*
19851686 TAGGCTCA
892 TGGGCTCA
** *
19851694 GGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCA---TC---G--T---CGGAGAACCT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
* * **
19851748 GACCGGC-G-ATAT-GGGTTTCGGTGATCGAGCGGGGTGGGGGGGGGTGTGCG--CATCGATGTG
66 GACCGGCGGCAT-TGGGGTTCCGGCGATCG-G-GGGG-GCCGGGGGGTGTGCGCACAT-GATGTG
* * * *
19851808 CGATGGGTGCTGGTACTT-GCTCTGAT-GTGG-CCCCTATCCCTAATCAAA-CTCGAGAACTCA-
126 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19851868 AACCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGT-TCTGAAAT
191 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
19851931 GGGGACACTTTTTTCAAATGGTCAC-AAATC-TGTACACTTCGAG-TTTTAGCTG-ATTTTTTTG
256 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
19851992 TGCATGCCAATAAAAATAC-AGGATCACGTCTACCCACGTTTTGGGCCAAATCTCCTTTC-AAAA
321 TGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * * * **
19852055 AATTTT-TAAAATCCCTGAACCTTAAAAAG-TTTCAAAAT-TTGTGAAAATAGAATCCCGAGTCG
385 AATTTTAAAAAATCCC-GAACCGCAAAAAGTTTTGAAAATCATG-AAAAATAGAA-AACGAGTCG
* *
19852117 TCTTG-CATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTAT-AATTTACAGGCCATAAAAAT
447 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
19852180 GGCA-TGGCACATAGAAATATGAAGATGTGCCTAACCCCA-CTACCACCCTATCGATCCACGACT
512 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19852243 TGCGCATGCCCGTCTCTCTGGCTGGCGTAGTGCCGCGCCGCCGTCGCCCGCATCCCCCTCGGTAT
577 TGCGCAT-CCCGTCTCTCTGGCCGGCGTA---CTGC-CCGCC--CGCCCG---CCCGCTC-GT-T
* * * *
19852308 TCGTCAGTTGGCTCTAGGC-TACGAAGTTCCTTCCTAGTCTAAGATC-GAACCGGGACCGAGGGT
630 TCGTCAGTTGGCT-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A-CTGGACCGAGGGT
* * * * * * * * *
19852371 TATGGTAGCAAGACTTGGCAAGCATGCAGACCGTGGGACCCGATCGATTCTCGACTTGGCGCAT-
692 TGTGGCAGCAGGA-TCGGC-AGCACGCAGA--GGGGGACCCGATCGATCCCCGGCTT-GCGCATC
* * *
19852435 CCGCCCCTCTGGCACGGCTAAGTGCCTGCATGCTCATTT-GTGGGGTTGACATTAGGCATACGGA
752 CCGCCCCTCTGGC-CGGCTGAGCGCCTGCATGCTCGTTTCGT-GGGTTGAC-TTAGGCATACGGA
* *
19852499 GTTCATT-CCAGTCTAAGGCATACGGAGCTTCATTCCCAGGTCTAAGATCGGACTGGACCGAGAG
814 GTTCATTCCCAGTCTAA-GCATACGGAG-TTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGG
* *
19852563 TTGCGGTAGCACATACTGGGCTC-
876 TTGCGGCAGCACATGCTGGGCTCA
* * * **
19852586 GAGCATGTGGCCT-G-GCACACAATTTTTCTTTGTTCGGGGCACCATCGTTGGATGCATCAACTA
1 G-GCATGT-G-CTGGTGC-CGC-ATTTTTCTTCG-TCGGGGCACCATCGTCGGA-GCATC-ACCG
* * * *
19852649 GAGAACTTGACCGGCAGGCATTGGGGTTCCGAGCCGCTCCAGGGGGGCCGGGGGGTGTACGCACA
58 GAGAACCTGACCGGC-GGCATTGGGGTTCCG-G-CGAT-CGGGGGGGCCGGGGGGTGTGCGCACA
* * *
19852714 TGAATGCCGCGATGGTGTGCTGG-ACTTGGCCCTTATATTGAG-CCCCTATCCCTCAACAAACTT
119 TG-ATG-TGCGATGG-GTGCTGGTACTTGGCCCTTATATTG-GCCCCCTATCCCTCATCAAACCT
* *
19852777 CGAAGAACTCACA--CCCTTAAGACAGCATCCTTGAAGATTTTAACAAGGTTTTGCCGCCAGTAG
180 CG-AGAACTCACACCCCCTTAA-AGAGCAT--TTG-AGATTTT-AC-AGG-TTTGCTGCCAGTAG
*
19852840 CCGTTAAAGTGGTTCTGAAATGGGGACAACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCG
237 CCATTAAAGT-G-TCTGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
19852904 AGTTTTTAGGTGAATTGTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTATCACCAAGTTTG
299 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTG
* * * *
19852968 GGGCCAAAAATCC-TCCG-AAAAATTTTTAAAAATCCCCG-ACCGCAAAAAAG--TTCAAAATCG
363 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCCGAACCGC-AAAAAGTTTTGAAAATCA
* *
19853028 TGAAAAATAGAAACCCGAGTTCGTCTTGCGATGGGAAAACTTCAACGTTGAAGGCTTAAGGGACC
426 TGAAAAATAGAAA-ACGAG-TCGTCTTGCCAT--G-AAACTTC-ACG-TGAAGGCTTAAGGGACC
*
19853093 ATTGTTATGAATTTACAAGCCATTAAACAATGGCAATTGGCACACAGAAACTATGAAGATCTTGC
484 ATTG-TATGAATTTACAAGCCA-TAAA-AATGGC-ATTGGCACACAGAAA-TATGAAGAT-GTGC
* * *
19853158 CT-AA-CCACCTACCACCCTATCGATCCACGGCTTGCCGCATCTCGTCTTGTCTGGCCGAACGTA
543 CTAAACCCACCTACCACCCTATCGATCCACGGCTTG-CGCATCCCGTC-TCTCTGGCCG-GCGTA
* * * * *
19853221 GTGCCCACCCGTCC-CCTGCT-TTCTTCGTC-GATTGGCCTTAGGCAT-CGGAGTTCATT-CCAG
605 CTGCCCGCCCGCCCGCCCGCTCGT-TTCGTCAG-TTGG-CTTAGGCATACGGAGTTCATTCCCAG
* * * * * * * * *
19853281 TCTAGGAT-TGAACTGGACCAAGGGTTATGGCAGCAAGATCGGTAGCATGCAGAGTGGGACCCGG
667 TCTAAGATCAG-ACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
* * * * * * **
19853345 CCGATCCCCGACTTGGGCATCCCGCCCCTTTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGG
731 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCATGCTCGTTTCGTGGG
*
19853410 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATC
796 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* *
19853475 GGACCGGA-CGAAGGGTTGCGGTAGCACATACTGGGCTCA
861 GGACCGGACCG-AGGGTTGCGGCAGCACATGCTGGGCTCA
* ** * ** *
19853514 AGCATGTGCTGGCACCACATTTTTCTTCACCAGGGG-ACCATCGTCGGAGCATCACCGGAGAACT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * * * *
19853578 TGATCGGCGGGATTAGGGTTCCGACGATCGGGAGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
65 TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
* *
19853643 TGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
129 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* ** *
19853708 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-TCGCTAGTAGCTGTTAAAGTGTCTTAAATGG
194 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19853772 GGACATTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
258 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
19853837 CACGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TACCTTCCGAAAGAA
323 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAA
* * ** *
19853901 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGACAAATAGAAAACGAGTCGTCTTG
387 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
19853966 CCATCAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGACAT
452 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19854031 TGGCACATAGAAATATGAAGATCTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTACGC
517 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
19854095 ATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCTGCCCGTCCGCCCGCTCATTTTGTCAGTTGGCT
582 ATCCCGTCTCTCTGGCCGGCGTA---CT-GCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
* * * *
19854160 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCAAGGGTT-TCGACAGTAGGATC
643 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGT-GGCAGCAGGATC
* * * * * * * *
19854224 GGTAGCACTCAGAGAGGGACCCGATCGATCCTCGACTTGCGCATCCCACCCCTCTGGCTGACTGA
707 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * * *
19854289 GTGCCCGCATGCTTGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCGAGTCTAAGCATAT
772 GCGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* *
19854354 GGAGTTCATTCCCAGTCTAAGCAT---A-CGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCG
837 GGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * *
19854414 GGCATGTGCTTGATGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC-GAGAACC
1 GGCATGTGC-TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * * *
19854478 -GACCGACGACATTGGGGTTTCCGGTGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
65 TGACCGGCGGCATTGGGG-TTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
19854542 TGGGTGCGGGGTACTTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
129 TGGGTGC-TGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** * *
19854607 CCGCCTTATCGAGCATTTGAGA--TT-CAGGTTTGTTG-CATTAG-CATT-AAGTGTCTGAAATG
192 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
19854666 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
257 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * ** *
19854731 GCACG-CAA-AAAAGTACAAGGATCACGTCTAGCAAGTTTTTGGCC--AACT-CTTTCGAAAAAA
322 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
19854791 TTTTTAAAAATCCCGAACCGCAATACG-TTTCAAATTCATGAAAAATAGAAAACGAGTCGTCTTT
387 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC-TT
* *
19854855 GCCATGAAA-TTCACGTGAAGGCATAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
451 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
19854919 TTGGCATGCAG-AATAATGAAAAATGTG-CTAAACCCACCTA-CA-CCTATAGATCCCATGGCTT
516 TTGGCACACAGAAAT-ATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CCACGGCTT
* * * * * *
19854980 GCACATCCCGTCTCTCTTCGCCGGCGTAGTG-CCG-TCG-TCGCCCGCTCGTTTCGTCGGTTGGC
578 GCGCATCCCGTCTCTC-TGGCCGGCGTACTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGC
* * ** * * *
19855042 TGAGGCCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACCAAGAGTTATGGCAGCAGGAT
642 TTAGG-CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGAT
* * * ** * * * *
19855107 TGGTAGCACGTAGAGTAGGACCCG-GCTGATCCTCGGCTTGCGCATCCCACCCCTCTGGTCGGCT
706 CGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
19855171 GAGCGCCTG-TTCGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTTTGAGCA
770 GAGCGCCTGCAT-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
19855235 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCGGCACATGCTGGGCTC
834 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
19855300 A
899 A
* * * * **
19855301 GCCATGTGTTGGTGCCGCATTTTTCTTAGTCAGGGCACCATCGTCGGAGCATTGCCGGAGAACCT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
** * * * *
19855366 GATTGGCTGCATTGGGGCTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTACGATG
66 GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
** *
19855431 GGTGCTGGTACTTGGAACTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
131 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
19855496 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
196 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
19855561 CACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTTGATGAATTTTTTTGTGTAT
261 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
19855625 GCCAAAAAAAATACAAGGATCACGTCTACAAATTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
326 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
*
19855690 AAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
391 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
19855755 GAAACTTCTCATGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
456 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
19855820 ACATAGAAATATGAAGATGTG-CTGAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGCATC
521 ACACAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
19855884 CCGTCTCTCTGGCCGACGTACTGCCCGCCCGCCCGCCCACTTGTTTCGTCAGTTGGCTTAGGCAT
585 CCGTCTCTCTGGCCGGCGTACTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
* * * * * ** * * *
19855949 CCAGAGTTCATTCCCATTCTAAGATCAGACTGGATCGAGTGTTGCCGCAGTAGGATTGGCAACAC
650 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* * ** *
19856014 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCCGGCCGATTGAGTGCCTGC
715 GCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGC
* * * * *
19856079 ATGCTCGTTTCATGGGTTTACTTAAGCATATGGAGTTCATTCCCAATCTAAGCATACGGAGTTCA
780 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
19856144 TTCCCATTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCA
845 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
*
19856199 GGCATGTGCTGGTGCCTCATTTTTCTTCG-CTGGGGCACCATCG-CTGGAGCATCACCGGAGAAC
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTC-GGAGCATCACCGGAGAAC
** * * * *
19856262 CTGACTAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGTGA
64 CTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
** * * * *
19856327 TTTGTGCTGGTCCTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACTTCAAGAACTCACACC
129 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19856392 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
194 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19856457 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTGTG
259 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTG
* * * *
19856522 CACGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAAT
323 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * **
19856587 TTTAAAAAATCTCGAACCGCAATAAGTTTCAAAAATCATGAAAAATAG-AAACGAGTCGTCTTGC
388 TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
19856651 CATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
453 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
19856716 GGCACATA-AAACTATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
518 GGCACACAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * ** *
19856780 ATCCCGTCTCTCTGGCTGGCATAGTGCTTGCCCGCCCGCCCACTCGTTTCGTC-GATTGGCTTAG
582 ATCCCGTCTCTCTGGCCGGCGTACTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAG-TTGGCTTAG
* *
19856844 GCATACGGAGTTCATTTCCAATCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCA
646 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * *
19856909 GCACGCAGAAGGGGACCCAACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCCGTTGAGCG-
711 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * * *
19856973 CTCGGACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATGCGGA
776 CT-GCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * *
19857038 GTTCATTCCCAATCTAAGATCAGACCAGTCCGAGGGTCGCGGCAGCACATGCTGTGCTCG
840 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * * **
19857098 GGCATTTGCTGGTGCCACATTTGTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCGGAGAACCT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
** * * *
19857163 GACTAGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTACAATG
66 GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
19857227 GGTGCTGGTACTTGGACCTCATATTGGCCCCCTATCCCCCATCAAACCTTGAGAACTCACACCCC
131 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
19857292 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
196 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
19857357 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACAC
261 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
** *
19857422 GCCAACAAAGGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCC-AAAAAATTTT
326 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTT
* * * *
19857486 TAAAAAATCTCGAACCGCAATAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCTA
390 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
19857551 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
455 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
19857616 TACACAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCGCATC
520 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
19857681 CCGTCTCTCTGGCCGGCATACTGCTCGCTCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
585 CCGTCTCTCTGGCCGGCGTACTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
** ** * *
19857746 ACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAAACTAAGGGTTGCGGTAGCAGGATCGGCAGCA
650 ACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA
** * * *
19857810 CGCAGAGGGGGACCCGATCGATCGTCGGCTTGCGCATCCCGCCCCTCTGGGCGGCTCAACGCCTG
714 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTG
*
19857875 CATGCTCATTTCGTGGGTTGACTTAGGCATAC-GACGTTCATTCCCAGTCTAAG-A-A--G-G--
779 CATGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
19857932 ---T---A--C------C--A---GACCGAGGGTTACGACAGCACATGCTAGGCTCA
843 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * * *
19857970 GGCATGTGCTGGTGCCGCATTCTTCTTCGCCGGGGCACCATCATCGGAGCATCACCAGAGAACCT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
* * * * * *
19858035 GACCGGCGACATTGGGGTTCTGGAGATCGGGGGGACCGGGGGGTGTGCGCACATAATGTGTGATG
66 GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
19858100 GGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCC
131 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
19858165 TTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTATGAAATGGGGA
196 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
19858230 CAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTATCTAAATTTTTTCGTGCAT
261 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
19858294 GCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGCCCAAAATTCCTTCCGAAAAAATTTT
326 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
** * *
19858359 AAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCAT
391 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
19858424 GAAACTTCTCGTGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGGCATTGGC
456 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*** * *
19858489 ATGTAGAAATATGAAGATGTGCCAAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCC
521 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
19858554 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCATGAGTTGGCTTAGGCATA
586 CGTCTCTCTGGCCGGCGTACTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
*** * * * * *
19858619 CGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAAGGTTGCGGCAGCAGGTTCGGTAGCACG
651 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACG
* * * ** *
19858684 CAGAGGAGGACCCGGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCTAGCTGAGCGCCCGCA
716 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCA
* *
19858749 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
781 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
19858814 TCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTC-
846 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* ** *** *
19858867 GAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATTGTCGGAGAGCC
1 G-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * * *
19858932 TGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGAGGGGTGTGCGCACATGATATGCTAT
65 TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
19858997 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
130 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
19859062 CCTTAAAGAGCATTTGATATTTTACAAGTTTGCTTCCAGTAGCCATTAAACTGTCTGAAATGGGG
195 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
19859127 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
260 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
19859192 TGCCAA-AAATAATGCAAGGATCACGTCTACCAAGTTTGGGG------------CC------A--
325 TGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
19859236 --AAAAAATCCCGAACTGCAAAAAGTTTTGAAAATTATGAAAAATATAAAACGAGTCGTCTTGCC
389 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
19859299 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTG
454 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
19859364 GCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCGCAT
519 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
19859429 CCCGTCTCTCTGGCCGGCATACTGCCCGCCCGCCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCA
584 CCCGTCTCTCTGGCCGGCGTACTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
* * *
19859494 TACAGAATTCATTCCCAGTCTAAGATCAGA-TCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGC
649 TACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGTGGCAGCAGGATCGGCAGC
* * *
19859558 ACGCATAGGGGGACCCGA-CTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCC
713 ACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
19859622 TGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG-
777 TGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * *
19859677 --A-----A---T--G-T---ACCAGACCGAGGGTTACGACAGCACATGCTAGGCTCA
842 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * * * * *
19859719 GGCATGTGCTGGTGTCGTATTCTTCTTCGTCGGGGCACCAGCATCAGAGCATCACCGGAGAACCT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
* * * * * * * *
19859784 GACCGACGACGTTGGGGTTCTGGCGATCGGGGGGATCGGGGGGGTGTACGCACATAATGTGCGAT
66 GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
19859849 GGGTGCTGCTACTTGGCCCTTATATTGGCCTCCTATCCC-CTATCAAACCTCGA-AACTCACACC
130 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTCACACC
* *
19859912 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATAGG
194 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
19859977 GACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTATCTAAATTTTTTCGTGC
259 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
19860041 ATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGCCCAAAATTCCTTCCGAAAAAATT
324 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
** * *
19860106 TTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCC
389 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19860171 ATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGGCATTG
454 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** *
19860236 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT
519 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
19860301 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGCTCGTTTCGTGAGTTGGCTTAGGCA
584 CCCGTCTCTCTGGCCGGCGTACTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
* * * * * * *
19860366 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTTGGGGTAGCAGGTTCGACAGCA
649 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA
* * * *
19860431 CGCAGAAGGGGACCCGATTGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGCTGAGCGCCCG
714 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTG
*
19860496 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
779 CATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * **** * *
19860561 ATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTTATAGCATATGCTAGGCTC-
844 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * *** *
19860616 GAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGTCGGAGAGCC
1 G-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * * * * * *
19860681 TGACCGACGGCATTAGGGTTTCGACGATCGGGGGCGTCGGGGGGTGTGTGCACATGATGTGCGAT
65 TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
19860746 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACACCC
130 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * * *
19860810 CCTTAAAGAGCATTTGATATTTTACAAGTTTGCTTCTAGTAGCCATTAAACTGTCTTAAATGGGG
195 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
19860875 ACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
260 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
19860940 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAACTCCTTCTGAAAAAATTT
325 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* ** * *
19861005 TAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCATCTTGGCA
390 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
19861070 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
455 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** *
19861135 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATC
520 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * ** *
19861200 CCGTCTCTCTGGCCGGTGTAGTGCATGCCCGCCCGTCCGCCTGTTCGTTTCGTTGGCTGGCTTAG
585 CCGTCTCTCTGGCCGGCGTA---C-TGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* * ** * *
19861265 GCATACGGAGTTCATTCCAAGTCTAAGATCAGA-TCGGACTGAGGGTTACGACAGCAGGATCGAC
646 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * ** * * * *
19861329 AGCACACAGAGGGAGACCCGACCGATCCCTGGCTTG-GACATCCCGCATCTCCGACCTGCTTAGC
710 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * * *
19861393 ACCCGTACGCTCGTTTCGCGGGTAGACTTAGGCATACAGAGTTCA-T-----T-T--G----C--
774 GCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * **
19861443 AG-TC--T---AG-----GATTGGACCGGATCGAGGGTTATGGCAGCACATGCTGGGCTC-
839 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * * *
19861492 GAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGATAACC
1 G-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * *
19861557 TGACCGGCGGCACTGGGGTTCCGGCGATCGGGGTGGCCGGGGGGGTGTACGCACATGATGTGCGA
65 TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
* * *
19861622 TGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACGCC
129 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
19861687 GCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTTCCAGTAGCCATTAAAGTGTTTGAAATGGG
194 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
19861752 GACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGACTTTTCAGCTAAATGTTTTTGTGC
259 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * **
19861817 ATGCCAACATAGATACAGGGATCACGTCTACCAAGCTTGGGCCCAAAACTCCTTCTAAAAAAATT
324 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
19861882 TAAAAAAATCTCGAACCGCAAAAAG-TTTCAAACATCATGAAAAATAGAAAACGAGTCGTCTTGC
389 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAA-ATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
19861946 CGTGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTACGAATTTACAAGCCATAAAAATGGTATT
453 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
19862011 GGCACACAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCATACGGA
518 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** * * * * *
19862076 TCTCGTCTCTCTGGTCAACGTAGTGCCCGACCAACTGCTCACCCGCTCATTTCGTCGGTTGGCTT
583 TCCCGTCTCTCTGGCCGGCGTACTGCCCG-CC--C-GCCCGCCCGCTCGTTTCGTCAGTTGGCTT
* * ** * * *
19862141 AGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGA
644 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * * * *
19862206 CAGCACGTAGAGGAGGACCCGATCGATCCCTGACTTGAGCATCCTGCCCCTCCGGCCGACTGAGC
709 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * ** * *
19862271 ACC--CA--CACG---C-T-CATT---TT--GC-T---G-GTTGA----C--T-TAGGCATACGG
774 GCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
19862310 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCACG
839 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
** * * ** *
19862371 GGCATGTGCTGGTGCCATATTTTTTTTCTTCGGGGCACCATCACCGGAGCATGACCGGAGAACCT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
* * * * * ** * *
19862436 AACCGACGGTATTGGAGTTTCGATGATC-GAGGGG-CAGGGGGTGTGCGCACATGATGTGCGATG
66 GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
*
19862499 GGTGCTGATACTTGGCCCTTATATT
131 GGTGCTGGTACTTGGCCCTTATATT
19862524 TGCTTCCAGT
Statistics
Matches: 9340, Mismatches: 1135, Indels: 739
0.83 0.10 0.07
Matches are distributed among these distances:
850 90 0.01
851 194 0.02
852 73 0.01
854 1 0.00
855 1 0.00
857 1 0.00
859 6 0.00
860 2 0.00
861 1 0.00
862 2 0.00
863 1 0.00
864 2 0.00
865 2 0.00
866 2 0.00
867 2 0.00
868 5 0.00
869 1 0.00
870 1 0.00
871 3 0.00
872 994 0.11
873 167 0.02
874 11 0.00
875 74 0.01
876 132 0.01
877 478 0.05
878 636 0.07
879 48 0.01
880 63 0.01
881 53 0.01
882 48 0.01
883 42 0.00
884 244 0.03
885 94 0.01
886 107 0.01
887 122 0.01
888 97 0.01
889 165 0.02
890 140 0.01
891 111 0.01
892 72 0.01
893 84 0.01
894 13 0.00
895 151 0.02
896 148 0.02
897 287 0.03
898 1723 0.18
899 709 0.08
900 212 0.02
901 149 0.02
902 205 0.02
903 171 0.02
904 53 0.01
905 22 0.00
906 2 0.00
907 7 0.00
908 19 0.00
909 93 0.01
910 44 0.00
911 44 0.00
912 43 0.00
913 8 0.00
914 16 0.00
915 15 0.00
916 31 0.00
917 51 0.01
918 35 0.00
919 30 0.00
920 14 0.00
921 14 0.00
922 19 0.00
923 12 0.00
924 14 0.00
925 18 0.00
926 16 0.00
927 62 0.01
928 10 0.00
929 29 0.00
930 54 0.01
931 59 0.01
932 13 0.00
933 62 0.01
934 72 0.01
935 29 0.00
936 14 0.00
937 26 0.00
938 10 0.00
939 6 0.00
940 21 0.00
941 3 0.00
942 12 0.00
943 8 0.00
944 6 0.00
945 5 0.00
946 17 0.00
947 40 0.00
948 18 0.00
949 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTACTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACG
CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCA
TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
Found at i:19858803 original size:26 final size:26
Alignment explanation
Indices: 19858773--19858825 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19858763 GTTGACTTAG
19858773 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19858799 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19858825 G
1 G
19858826 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19860558 original size:26 final size:26
Alignment explanation
Indices: 19860522--19860574 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19860512 GTTGACTTAG
19860522 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19860548 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19860574 G
1 G
19860575 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19863127 original size:26 final size:26
Alignment explanation
Indices: 19863091--19863143 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19863081 GTTGAATTAG
19863091 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19863117 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19863143 G
1 G
19863144 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19864899 original size:26 final size:26
Alignment explanation
Indices: 19864870--19864922 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19864860 GTTGACTTAG
* *
19864870 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
19864896 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
19864922 G
1 G
19864923 ATAAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:19865815 original size:26 final size:26
Alignment explanation
Indices: 19865785--19865837 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19865775 GTTTACTTAC
*
19865785 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19865811 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
19865837 G
1 G
19865838 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:19866675 original size:26 final size:26
Alignment explanation
Indices: 19866639--19866691 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19866629 GTTGACATGG
19866639 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19866665 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19866691 G
1 G
19866692 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19867527 original size:26 final size:26
Alignment explanation
Indices: 19867490--19867542 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19867480 GTTGACTTAG
19867490 GCATACAGAGTTCATTCCCT-GTCTAA
1 GCATACAGAGTTCATT-CCTAGTCTAA
19867516 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCTAGTCTAA
19867542 G
1 G
19867543 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:19869039 original size:893 final size:894
Alignment explanation
Indices: 19867304--19872101 Score: 5899
Period size: 893 Copynumber: 5.4 Consensus size: 894
19867294 TATAAAAAAA
* * * * * *
19867304 GCCCGTTCGTTTCGTTGGTTGGCTTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * *
19867369 CCGAGGGTTACGGCAGCAGGATCGGCAGCATGCAGAGGGTGACCC-AGTCGATCCCCAGCTTGCG
66 CCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCG
* * * * * *** * * *
19867433 AATCCCACCCCTCTGGTCGTCTTAATACACACACGCTCATTTTATGGGTTGACTTAGGCATACAG
130 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG
* * * *
19867498 AGTTCATTCCCTGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGATCAGACTGAGGGTT
195 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
* * * *
19867563 GTGACAGCACA----T-GC-C-GGCATGTGCTGGTGTCGTATTTTTTTTTG-CTGGGGCACCA--
260 GCGACAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCACCATC
* * * *
19867618 -TCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-AGCGATTGGGGGGGCCAGGGGGTGTGCG
324 GTCATCGGAGAACCTGACCGACGACATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCG
* * *
19867681 CACATGATGAGCGATGGGTGCTGATACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCT
388 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
19867746 CGAGAAGTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
453 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
19867811 GTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
518 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
19867876 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTC
583 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
** * * * *
19867941 CTTTTGAAAGAATTTAAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATA-AAAA
648 CTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
* * * *
19868005 AGAAGTCATCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTAGAAGCA
713 CG-AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
19868070 ATAAAAATGCCATTGGCACGCATAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGAT
777 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
19868135 CCACGGCTTGCGCATCCCATCTCTCTTGTCGGCGTAGTGCCCACCCGTCCGTCC
842 CCACGGCTTGCGCATCCCGTCTCTCTTGCCGGCGTAGTGCCCGCCCG-CCGCCC
* *
19868189 GCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCAGACCGGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * ** * *
19868254 CCAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATACCCGGCTTGCGC
66 CCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * *
19868319 ATCCCGCCCAC-CTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGACATACAG
131 ATCCCGCCC-CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG
* * ** *
19868383 AGTTCATTCCCTGTCTACGCATACGGAGTTCATTCTTAGTCTAAGATCGGATCAGACTGAGGGTT
195 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
* *
19868448 GCGACAGCACATGCCTTGGCTCGGGCTTGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCA-C-T-
260 GCGACAGCACATG-CTTGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
* *
19868510 GTCATCGGAGAACCTGACCGACGACATTGGGGTTCTAGTC-ATCGGGGGGGCCGGGGGGTGTGCG
324 GTCATCGGAGAACCTGACCGACGACATTGGGGTTC-CGACGATCGGGGGGGCCGGGGGGTGTGCG
*
19868574 CACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCCTATCCCTCATCAAACC
388 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCCTATCCCTCATCAAACC
*
19868639 TCGAGAACTCACACCCCCTTAAAGAGCA-TTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAA
452 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
19868703 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGTGTTTTTTGC
517 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* ***
19868768 TGAATTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCATGTCTACCAAGTTTGGCATCAAAACT
582 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT
* * *
19868833 CCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAGA
647 CCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* * *
19868898 ACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCC
712 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
19868963 ATAAAAATGGCATTGGCACACAGAAAGATGAAGATGTGCCTAAGCCCACGTACCACCCTATCGAT
777 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
19869028 CCACAGCTTGCGCATCCCATCTCTCTAGCTGGCGTAGTGCCCGCCCGCCTGCCT
842 CCACGGCTTGCGCATCCCGTCTCTCTTGCCGGCGTAGTGCCCGCCCGCC-GCCC
* * * *
19869082 GCCCGCTCATTTCATCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * ** * * *
19869147 TCGACGGTTGCAGTAGCAGGATTGGTAGCACGCAAAGAGGGACCCGATTGATCCCCGGCTTGCGC
66 CCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * * *
19869212 ATCCCGCTCCTCTGGCCGGCTGAGTGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
131 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGA
*
19869277 GTTCATTCCCAG--T---C-TA---AG---------A-TC--AGA-C----CAGACCGAGGGTTA
196 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTG
* *
19869316 CGATAGCACATG-TTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCG
261 CGACAGCACATGCTT-GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG
* *
19869380 TCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGG
325 T-----CAT---CGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* * *
19869444 CTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCTCGTATCCCTCAT
382 -TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
19869509 CAAA-CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
446 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
19869573 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTTGAGTT
511 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
19869638 TTTAGCTGAA-GTTTTTGTGCATGCCAACAAAACTACAAGGATCATGTCTACCAAGTTTGGGGCT
576 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
* * *
19869702 AAAACTTCTTCCGAAAAAATTTTAAAAAATCAC-AAACCGTAAAAA-TTTTGAAAATCGTGAAAA
641 AAAACTCCTTCCGAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTTGAAAATCGTGAAAA
* *
19869765 ATAGAAAACGAGTCATCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTT
705 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * **
19869830 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAATATGCACCTAAACCCACCTACCACCC
770 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
19869895 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTAT-CCAGCGTAGTGCCTGACCGCCCACCCGCC
835 TATCGATCCACGGCTTGCGCATCCCGTCTCTCT-TGCCGGCGTAGTG-C---CCGCCC-GCCGCC
*
19869959 T
894 C
* * * * *
19869960 GCCCGTTTGCTCGTTTCATCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCATAT
1 GCCC----GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * *
19870025 TGGATCAAGGCTTGCGGCAACAGGATCGACAGCACGCA-ATGGGGGACCCGA-CTGATCCCTGAC
62 CGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGA-GGGGGACCCGATC-GATCCCCGGC
* * *
19870088 TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCA
125 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCA
* * * * *
19870153 TACAGAGTTCATTCCCAGTCTAAGGATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCGT
190 TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGA
* * * * *
19870218 GGGTTGCGACAACACATGCTGGGCTCGGGCATGTGCAGGTGCTGTATTTTTCTTCGTCGGGACAC
255 GGGTTGCGACAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAC
* * ** * *
19870283 CATCGCCGAAGCATCGTCGAAGAACCTGACCGGCGATGTTGGGGTTCCGACGAACGGGAGGGCCG
320 CAT---CG--TCATCG--G-AGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCG
* *
19870348 GGGGGTGTGCACACATGATGTGCGATGGGTGCCGGTACTT-GCCCTTATATTGGCCCCCTATCCC
377 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
19870412 TCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
442 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
19870477 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTTG
507 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
19870542 AGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAGATACAAGGATCATGTCTACCAAGTTTGG
572 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
* * * ** *
19870607 GGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGA
637 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGA
* *
19870672 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAA
702 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
19870737 TTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
767 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * *
19870802 CCTTTTTGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACTTAGTGCCCGCTCGCCCGCCCG
832 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTTGCCGGCGTAGTG--C-C-CGCCCG-CCG
19870867 CCC
892 CCC
* * * * * * ** *
19870870 GCCCACTCATTTTGTCGGTTGGCTTACGCAT-CGAAGTTCATTCCCAGTCTAAAATTGGACTGGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * * * *
19870934 CTGAGGGTTGTAGCAGTAGGATCGATAGTACGCAGAGGGGGACCCAATTGATCCTCGGCTTGCGC
66 CCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * * *
19870999 ATCCCTCCCGTCTGGCTGGCTGAGCGCCTGTACGCTCATTTCGTGGGTTGACTTAGGCATAC-GA
131 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG-
* * * * *
19871063 AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTCCAATCTAAGATCGGA-CTGGACCAAGGGT
195 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGT
* * * * * *
19871127 TGGGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGTATTTGTCTTCGTCGAGGCACCATT
259 TGCGACAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA--
* * * *
19871192 GTCAGAGCATCATCGGAGAACCTGACCGGC-AGCATTGGGGTTTCGACGATCGGGGGGTCGGGGG
322 -TC---G--TCATCGGAGAACCTGACCGACGA-CATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * * * *
19871256 GGTGTGCGCGCATGATGTGCTATGGGTGCTGGCACTTGGCCCTTACATTGGCTCCCTATCCCTCA
380 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
19871321 TCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAG
445 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
19871386 CCATTAAAGTGTCTAAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGT
510 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
19871451 TTTTAGCTGAATGTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
575 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
* * *
19871516 CAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CTCAAACCGCTAAAAGTTTTGAAAATCGTGAAA
640 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAA
19871580 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
704 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
19871645 TACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
769 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
19871710 CTATCGATCCACTGCTTGCACATCCCGTCTCT-TTGGCCGACATAGTACCCGCCCACCCGCCTGC
834 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTT-GCCGGCGTAGT----GCCCGCCCGCC-GC
19871774 CC
893 CC
* * * **
19871776 GCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCAGACTAGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * * * *
19871841 CCGAGGGTTGCAACAACAGGTTCGACAGCACGCAGAGGGGGATCCGATCGACCCCCTGCCTACGC
66 CCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * *
19871906 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAAGCATACGGA
131 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGA
* ** *
19871971 GTTCATTCCCAGTCTAAACATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTA
196 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT-
* * * *
19872036 G-G-CAGTACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
260 GCGACAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG
19872099 TCA
325 TCA
19872102 GAGCATCATA
Statistics
Matches: 3392, Mismatches: 407, Indels: 215
0.85 0.10 0.05
Matches are distributed among these distances:
865 2 0.00
866 40 0.01
867 24 0.01
868 1 0.00
869 2 0.00
871 1 0.00
872 3 0.00
874 179 0.05
875 115 0.03
876 129 0.04
877 81 0.02
878 14 0.00
879 2 0.00
881 1 0.00
882 172 0.05
884 3 0.00
885 233 0.07
886 2 0.00
887 2 0.00
888 3 0.00
890 1 0.00
891 5 0.00
892 5 0.00
893 680 0.20
894 51 0.02
898 3 0.00
900 2 0.00
901 2 0.00
903 5 0.00
904 4 0.00
905 315 0.09
906 528 0.16
907 219 0.06
908 271 0.08
909 101 0.03
910 187 0.06
911 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTG
CGACAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGT
CATCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
CCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGTCTCTCTTGCCGGCGTAGTGCCCGCCCGCCGCCC
Found at i:19870186 original size:26 final size:26
Alignment explanation
Indices: 19870152--19870202 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19870142 TGACTTAGGC
*
19870152 ATACAGAGTTCATTCCCAGTCTAAGG
1 ATACAGAGTTCATTCCCAATCTAAGG
*
19870178 ATACGGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
19870203 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGG
Found at i:19871105 original size:26 final size:26
Alignment explanation
Indices: 19871055--19871107 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19871045 GTTGACTTAG
*
19871055 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAATCTAA
*
19871081 GCATACGGAGTTCATTTCC-AATCTAA
1 GCATACGAAGTTCA-TTCCTAATCTAA
19871107 G
1 G
19871108 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAATCTAA
Found at i:19871232 original size:905 final size:902
Alignment explanation
Indices: 19869268--19872110 Score: 3801
Period size: 906 Copynumber: 3.1 Consensus size: 902
19869258 GTTGACTTAG
* * * * * *
19869268 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTGCGACAGCACATGCTGGG
* * **
19869333 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCATCGGAGA
*
19869398 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGCTGTGCGCACATGATGTGC
131 ACCTGACCGAC-GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGC
* * * *
19869463 GATAGGTGCTGGTACTTGGCCCTTATATTGGCCTCGTATCCCTCATCAAA-CTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19869527 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19869592 GGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-GTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19869656 GCATGCCAACAAAACTACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTTCTTCCGAAAAAA
389 GCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
19869721 TTTTAAAAAATCAC-AAACCGTAAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
453 TTTTAAAAAATC-CTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* *
19869784 GTCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
19869849 TTGGCACATAGAAATATGAATATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
19869914 CATCCCGTCTCTCTATCC-AGCGTAGTGCCTGACCGCCCACCCGCCTGCCCGTTTGCTCGTTTCA
647 CATCCCGTCTCTCTAGCCGA-CGTAGTGCCCG-CCGCCCGCCCGCCCGCCC----GCTCGTTTCG
* * * * * * *
19869978 TCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCATATTGGA-TCAAGGCTTGCGG
706 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTGCAG
* * * * *
19870042 CAACAGGATCGACAGCACGCA-ATGGGGGACCCGACTGATCCCTGACTTGCGCATCCTGCCCCTC
770 CAGCAGGATCGATAGCACGCAGA-GGGGGACCCGATTGATCCC-GGCTTGCGCATCCCGCCCCTC
* *
19870106 TGGCCGGCTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCA
833 TGGCCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCA
19870170 GTCTAA
897 GTCTAA
* * * * *
19870176 GGATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCGTGGGTTGCGACAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
19870241 CTCGGGCATGTGCAGGTGCTGTATTTTTCTTCGTCGGGACACCATCG-CCGAAGCATCGTCGAAG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAG-AGCATCATCGGAG
* * *
19870305 AACCTGACCGGCG-ATGTTGGGGTTCCGACGAACGGGAGGGCCGGGGGGTGTGCACACATGATGT
130 AACCTGACCGACGCA--TTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGT
*
19870369 GCGATGGGTGCCGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19870433 AACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
19870498 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTTGAGTTTTTAGCTGACTTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
19870563 GTGCATGCCAAAAAAGATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
387 GTGCATGCCAAAAAA-ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * *
19870628 AATTTAAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCT
*
19870693 TGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
19870758 ATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTTTTGATCCATGGCTTGC
581 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
19870823 GCATCCCGTCTCTCTGGCCGACTTAGTGCCCGCTCGCCCGCCCGCCCGCCCACTCATTTTGTCGG
646 GCATCCCGTCTCTCTAGCCGACGTAGTGCCCGC-CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * ** * *
19870888 TTGGCTTACGCAT-CGAAGTTCATTCCCAGTCTAAAATTGGACTGGACTGAGGGTTGTAGCAGTA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCA
* * * * *
19870952 GGATCGATAGTACGCAGAGGGGGACCCAATTGATCCTCGGCTTGCGCATCCCTCCCGTCTGGCTG
775 GGATCGATAGCACGCAGAGGGGGACCCGATTGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
19871017 GCTGAGCGCCTGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
839 GCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * *
19871081 GCATACGGAGTTCATTTCCAATCTAAGATCGGACTGGACCAAGGGTTGGGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
19871146 CTCAGGCATGTGCTGGTGCCGTATTTGTCTTCGTCGAGGCACCATTGTCAGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCATCGGAGA
* * * *
19871211 ACCTGACCGGCAGCATTGGGGTTTCGACGATCGGGGGGTCGGGGGGGTGTGCGCGCATGATGTGC
131 ACCTGACCGAC-GCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
* * * * *
19871276 TATGGGTGCTGGCACTTGGCCCTTACATTGGCTCCCTATCCCTCATCAACCCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19871341 CCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
19871406 GGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATGTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
19871471 GCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
389 GCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
19871536 TTTTAAAAAAT-CTCAAACCGCTAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
453 TTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
19871600 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19871665 TTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCA
582 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
19871730 CATCCCGTCTCTTTGGCCGACATAGTACCCGCCCACCCGCCTGCCCGCACGCTCGTTTCGTCGGT
647 CATCCCGTCTCTCTAGCCGACGTAGTGCCCG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * *
19871795 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCAGACTAGACCGAGGGTTGCAACAACAG
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCAG
* * * * * * * * *
19871860 GTTCGACAGCACGCAGAGGGGGATCCGATCGACCCCCTGCCTACGCATCCCGCCCCTCTGGCCGA
776 GATCGATAGCACGCAGAGGGGGACCCGATTGA-TCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
19871925 CTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
840 CTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* ** * * *
19871988 ACATACAAAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTAG-G-CAGTACATGCTG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACT-AGACCGAGGGTT-GCGACAGCACATGCTG
* *
19872050 GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCAT
64 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCAT
19872111 AGGATCGACA
Statistics
Matches: 1696, Mismatches: 212, Indels: 56
0.86 0.11 0.03
Matches are distributed among these distances:
904 3 0.00
905 320 0.19
906 554 0.33
907 225 0.13
908 308 0.18
909 95 0.06
910 190 0.11
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCATCGGAGA
ACCTGACCGACGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTAGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCAGGATCG
ATAGCACGCAGAGGGGGACCCGATTGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:19872254 original size:26 final size:26
Alignment explanation
Indices: 19872215--19872267 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19872205 GTTGACTTAG
* *
19872215 GCATACGGAATTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAATCTAA
*
19872241 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
19872267 G
1 G
19872268 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:19873147 original size:26 final size:26
Alignment explanation
Indices: 19873117--19873169 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19873107 GTTGACTTAG
19873117 GCATACAGG-GTTCATTCCCAGTCTAA
1 GCATA-AGGAGTTCATTCCCAGTCTAA
*
19873143 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
19873169 G
1 G
19873170 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:19874059 original size:616 final size:602
Alignment explanation
Indices: 19873282--19874690 Score: 2075
Period size: 617 Copynumber: 2.3 Consensus size: 602
19873272 CAAGGGGGCA
* * *
19873282 TGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATT
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
** *
19873347 AAACCTCGAGAACTCACACAACCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCC
66 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
19873412 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTTTTCAA
131 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTTTCAA
* * * *
19873477 ATGCCAGTAGCCATTACAATCCCGTCTCTCTGGCAGACATAGTGCCCGCCCGGTCGCCCGTCTGC
196 ATGCCAGTAGCCATTACAATCCCGTCTCTCTGGCAGACATAGTGCCCGCCCGATCGCACGCCTAC
* * * * *
19873542 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTAGTTCCTATTCTAAGATCAGATCGAACTGA-G
261 TCATTTCGTCAGTTGGCTTAGGCATACAGAATTAATTCCTATTCTAAGATCAGATCAAACTGAGG
*
19873606 GTTGTGGCAGTCAGATCCACAGCAT-GCAGAGGGGGACCCAGCTGATCCCCGGCTTGTGCATCCC
326 GTTGTGGCAGACAGATCCACAGC-TCGCAGAGGGGGACCCAGCTGATCCCCGGCTTGTGCATCCC
**
19873670 ACCCCTCTGGCTGACTGAGCACCCGCACGCTTGTTTCGTGGGTTGACATAGGCATACAGAGTTCA
390 ACCCCTCTGGCTGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACATAGGCATACAGAGTTCA
* * * * *
19873735 TTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTT
455 TTCCCAGTCTAACATCGAACCGGACAGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTT
* * * * *
19873800 GGTGTCGTATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCAGAAGAGAACCTGACCGACGGC
520 GGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCAGAGCATCACAAGAGAACCTGACCGACGGC
19873865 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
585 ATT-GGGTTCCG--GA-----------GGGGG
*
19873897 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATCCCTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
19873962 AAACCTCGAGAACTCGCACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
66 AAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
19874027 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTTTCA
130 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTTTCA
* * *
19874092 AATGCCAGTAGCCATTACAATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCGATCTCATGCCTA
195 AATGCCAGTAGCCATTACAATCCCGTCTCTCTGGCAGACATAGTGCCCGCCCGATCGCACGCCTA
* *
19874157 CTTATTTCGTCAGTTGGCTTAGGCATACAGAATTAATTCCTATTCTAAGATCGGATCAAACTGAG
260 CTCATTTCGTCAGTTGGCTTAGGCATACAGAATTAATTCCTATTCTAAGATCAGATCAAACTGAG
* * * *** * *
19874222 GGTTGTGGCAGACATATCGACAGCTCGCAGATGGGGACTTGGCTGATCCCTGGCTTGTGCATCTC
325 GGTTGTGGCAGACAGATCCACAGCTCGCAGAGGGGGACCCAGCTGATCCCCGGCTTGTGCATCCC
* ** * *
19874287 GCCCCTCTGGCTGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCATAGGCATACAGAGTTCA
390 ACCCCTCTGGCTGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACATAGGCATACAGAGTTCA
19874352 TTCCCAGTCTAACATCGAACCGGACAGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTT
455 TTCCCAGTCTAACATCGAACCGGACAGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTT
* **
19874417 GGTGCCGTATTTTTCTTCATCGAGGCACCATCGTCAGAGCATCACCGGAGAACCTGACCGACGGC
520 GGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCAGAGCATCACAAGAGAACCTGACCGACGGC
19874482 ATTGGGTTCCGGAGGGGG
585 ATTGGGTTCCGGAGGGGG
* * * * *
19874500 TGTGCGTATATGATGTGCGATTGCTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * *
19874565 AAACCTCGATAACTCAAACCCCCTTAAAGAGCGTTTGAGATTTTATAGGTTTGCTACCAGTAGCC
66 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
19874630 ATTAAAGTGTTTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTT
131 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTT
19874691 AGCTGAATTT
Statistics
Matches: 724, Mismatches: 67, Indels: 19
0.89 0.08 0.02
Matches are distributed among these distances:
602 97 0.13
603 84 0.12
614 2 0.00
615 81 0.11
616 228 0.31
617 232 0.32
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (602 bp):
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTTTCAA
ATGCCAGTAGCCATTACAATCCCGTCTCTCTGGCAGACATAGTGCCCGCCCGATCGCACGCCTAC
TCATTTCGTCAGTTGGCTTAGGCATACAGAATTAATTCCTATTCTAAGATCAGATCAAACTGAGG
GTTGTGGCAGACAGATCCACAGCTCGCAGAGGGGGACCCAGCTGATCCCCGGCTTGTGCATCCCA
CCCCTCTGGCTGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACATAGGCATACAGAGTTCAT
TCCCAGTCTAACATCGAACCGGACAGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTG
GTGCCGTATTTTTCTTCACCGAGGCACCATCGTCAGAGCATCACAAGAGAACCTGACCGACGGCA
TTGGGTTCCGGAGGGGG
Found at i:19875223 original size:26 final size:26
Alignment explanation
Indices: 19875193--19875263 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
19875183 GTTAACTCAG
19875193 GCATACGGAGTTCATTCCTTATCTAA
1 GCATACGGAGTTCATTCCTTATCTAA
*
19875219 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCTTATCTAA
*
19875245 GCATACGAAGTTCATTCCT
1 GCATACGGAGTTCATTCCT
19875264 AGCCAAAGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTTATCTAA
Found at i:19877058 original size:26 final size:26
Alignment explanation
Indices: 19877022--19877071 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19877012 GACTTAGGCG
19877022 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
19877048 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19877072 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19877720 original size:900 final size:894
Alignment explanation
Indices: 19874338--19878002 Score: 4635
Period size: 904 Copynumber: 4.1 Consensus size: 894
19874328 GTTGGCATAG
* * * * * *
19874338 GCATACAGAGTTCATTCCCAGTCTAACATCGA-ACCGGACAGAGGGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGATACCAGACTGAGGGTTACGACAGCACATACTAG
* * * *
19874402 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCATCGAGGCACCATCGTCAGAGCATCACCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGCCGGAG
* * *
19874467 AACCTGACCGACGGCATT-GGGTTCC-G-GA--------G-GGGGTGTGCGTATATGATGTGCGA
131 AACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGAGGGGTGTGCGCACATGATGTGCGA
* * *
19874520 TTGCTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGATAACTCAAACC
196 TGGCTGCTGGTACTTGGCCCTTATAGTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAAACC
* * *
19874585 CCCTTAAAGAGCGTTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19874650 GATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTTAGCTGAATTTTTTTGTGCATGCCA
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
19874715 ACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAGTCATTCCGAAAAAATTTTAAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
** * * *
19874780 AATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTCGCCACGAAA
456 AATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
19874845 CTTC-CGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
521 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
19874909 TGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
586 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
* * * * *** * *
19874974 TCTCTGGCCGACGAAGTGCACGCCTGCCCGCCCGCCTATTCGTTTCGTCGGTTGGCTTAGGCATA
651 TCTCTGGCCGGCGAAATGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATA
* * * * * * *
19875039 CAGAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGGGTTGCAGCAGCAGGGTCGGTAGCACG
716 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACG
* * * * * *
19875104 CAGAGAGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGTTGAGTGCCCGTA
781 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
19875169 CGGCTGTTTCGTGTGTTAACTCAGGCATACGGAGTTCATTCCTTA-TCTAA
846 CGTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAA
19875219 GCATACGGAGTTCATTCCCTA-TCTAAGCATACGAAGTTCATTCCTAGCCAAAGATCAAATTGGA
1 GCATACGGAGTTCATTCCC-AGTCTAAG-AT-C---G---A----TA-CC--AGA-C----T-G-
* *
19875283 CCAAGGGTTAC-AGCAGCACATGCTAGGCTCGGG-ATGTGCTGGTGTCGCATTTTTCTTCATCGG
43 ---AGGGTTACGA-CAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
* * ** ** *
19875346 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGTTCGGCGGCATTGGGGTTCTGGAGATCGGGGG
104 GGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATC-GGGG
* *
19875411 GGTCGAGGGG-GTGCGCACATGATGTGCGTTGGCTGCTGGTACTTGGCCCTCATAGTGGCCCCTT
168 GG--GAGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATAGTGGCCCCTT
* * * *
19875475 ATCCCTCATGAAACGTCGAGAACTCAAACCCCCATAAGGAGCATTTGAGATTTTATAGGTTTGCT
231 ATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
*
19875540 TCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
296 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
19875605 CTTTTTAG-TCAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
361 CTTTTTAGCT-GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* ** *
19875669 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCTGAACCGTAAAAAGTTTCAAAAATAATGA
425 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGA
*
19875734 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAA
490 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
**
19875799 TTTACAAGATATAAAAATGGCATTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
555 TTTACAAGCCATAAAAATGGCA-TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** * * * * *
19875864 ACCCTATCGATCCACGGCTTGTGCATCCTATCTTTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTC
619 ACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGAAATGCCCGCCCGCCCGCCC
* * *
19875929 ACTCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATACCCAGTCTAAGATCAGACCAGA
684 GCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
** * * * * *
19875994 CCGAAGAATTACGGTAGTC-GGATCGACAGCACGCAGAGGGGGACCCGACCCATCCTCGGCTTGT
749 CCG-AGGGTTACGGCAG-CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
*
19876058 GCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
812 GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACG-TCGTTTCGTGGGTTGACTTAGGCATACG
19876123 GAGTTCATTCCCAGTCTAA
876 GAGTTCATTCCCAGTCTAA
** * * * * * *
19876142 GCATATAGAGTTCATT-CCAGTCTAAGATC-AGACCGGACCGAGGGTTGCGATAGAACATACTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGATACCAGACTGAGGGTTACGACAGCACATACTAG
* *
19876205 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGCCGGAG
* * *
19876270 AACTTGACCGGTGGCATTGGGGTTCCA-CGATCGGGGGGCCGGAGGGGGTGTGCACACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCAGCGATC-GGGGG--GGA-GGGGTGTGCGCACATGATGT
* * *
19876334 GCGATGGGTGGTGGTACTTGGCCCTTATAGTGGCCTCC-TATCCCTCATCAAACCTCGAGAACTG
192 GCGATGGCTGCTGGTACTTGGCCCTTATAGTGGCC-CCTTATCCCTCATCAAACCTCGAGAACTC
* * * * * *
19876398 AAACCCCTTTGAAGAGCATTTGAGATTTTATAGGTTTGTTGCCGGTAGCCATTAAAGCGTCTCAA
256 AAACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
19876463 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACATCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT--ACA-C---TTTTTAGCTGAA-TTTTT
** * *
19876528 TTGTGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAA
379 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
19876593 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
444 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
19876658 CTTGCCATTAAACTCCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAACCATAAAAATG
509 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
19876723 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTA
574 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
19876788 GTGCATCTCGTCTCCCTGGTCGGGGTAATGCCCGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTT
639 GTGCATCCCGTCTCTCTGGCCGGCGAAATGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATT
* ** *** *
19876853 GGCTTAGACATGTGGAGTTCATTCCCTA-TCTAAGATCAGATTGGACCGAGGGTTACGGCAGTAG
704 GGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAG
* * * * * *
19876917 GATCAGCAGCACGTAGCGGGGGACCCGACCGATCCCCGGCTTGTGTATCCTGCCCCTCTGGCCGA
768 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* *
19876982 CTGAGCCCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
833 CTGAGCGCCCGCACG-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19877045 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGCAGCACGTACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGATACCAGACTGAGGGTTACGACAGCACATACTAG
*** * * *
19877109 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACAATCATCAGAGCATCGCCAGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGCCGGAG
* * * *
19877174 AACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGG-GGCTGTGTACGCACATGTTGTGTG
131 AACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGAGG-GGTGTGCGCACATGATGTGCG
* * * *
19877238 ATGGGTGCTGTTTCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACT-AACA
195 ATGGCTGCTGGTACTTGGCCCTTATAGTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAA-A
* *
19877302 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19877367 GGGATATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA---C---TTTTTAGCTGAATTTTTTTGT
19877432 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
383 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
19877497 TTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAGTCTTG
448 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19877561 CCATGAAACTTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCCTAAAAATGGCA
513 CCATGAAACTT-CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19877626 TTGGCATGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
577 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
*
19877691 CATCCCGTCTCTCTGGCTGGCGAAATGCCCGCCCGCCCGTCCGCCTGCCCGCTCGTTTCATCGAT
642 CATCCCGTCTCTCTGGCCGGCGAAATGCCCGCCCGCCCG--C-CC-GCCCGCTCGTTTCATCGAT
* ** * *
19877756 TGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACTGGACCGAGGGTTGCGGCCGCAG
703 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAG
* * * * * * * *
19877821 GATCGGTAGCACGTAGAGGGGGACTCGACCAATGCTCAGCTTGCGCATCCCGCCCCTCTGGCCGG
768 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* * * * *
19877886 CTGGGCGCCTGTTCAC-TCATTTCGTGGGTTGCCTTAGGCTTACGGAGTTCATTCCC-GATCTAA
833 CTGAGCGCCCG--CACGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAA
* * **
19877949 GCATACGAAGTTCATTCCCAGCCTAAGATCGGAT--CAGACCCAGGGTTACGACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GATACCAGACTGAGGGTTACGACAG
19878003 TAGGATCGAC
Statistics
Matches: 2420, Mismatches: 277, Indels: 151
0.85 0.10 0.05
Matches are distributed among these distances:
881 23 0.01
882 3 0.00
883 1 0.00
886 1 0.00
889 1 0.00
894 1 0.00
895 2 0.00
896 36 0.01
897 82 0.03
898 162 0.07
899 65 0.03
900 234 0.10
901 176 0.07
902 3 0.00
903 146 0.06
904 506 0.21
905 199 0.08
906 71 0.03
907 33 0.01
908 3 0.00
909 3 0.00
913 1 0.00
919 1 0.00
920 320 0.13
921 54 0.02
922 162 0.07
923 129 0.05
924 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGATACCAGACTGAGGGTTACGACAGCACATACTAG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGCCGGAG
AACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGAGGGGTGTGCGCACATGATGTGCGA
TGGCTGCTGGTACTTGGCCCTTATAGTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAAACC
CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
TCTCTGGCCGGCGAAATGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACG
CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19877974 original size:26 final size:26
Alignment explanation
Indices: 19877926--19877975 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
19877916 GCCTTAGGCT
* *
19877926 TACGGAGTTCATTCCCGATCTAAGCA
1 TACGAAGTTCATTCCCGACCTAAGCA
19877952 TACGAAGTTCATTCCC-AGCCTAAG
1 TACGAAGTTCATTCCCGA-CCTAAG
19877976 ATCGGATCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATTCCCGACCTAAGCA
Found at i:19878096 original size:185 final size:185
Alignment explanation
Indices: 19877764--19878134 Score: 449
Period size: 185 Copynumber: 2.0 Consensus size: 185
19877754 ATTGGCTTAG
* ** * * * * * **
19877764 GCATACGGAGTTCATTCCCATTCTAAGATCAGACTGGACCGAGGGTTGCGGCCGCAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGCCTAAGATCAGACTAGACCCAGGGTTACGACAGCAGGATCGACA
* * * **
19877829 GCACGTAGAGGGGGACTCGACCAATGCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGGGCGC
66 GCACGCAGAGGGGGACCCGACCAATGCTCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAACGC
* ** * *
19877894 CTGTTCACTCATTTCGTGGGTTGCCTTAGGCTTACGGAGTTCATTCCC-GATCTAA
131 CCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAA
* *
19877949 GCATACGAAGTTCATTCCCAGCCTAAGATCGGA-TCAGACCCAGGGTTACGACAGTAGGATCGAC
1 GCATACGAAGTTCATTCCCAGCCTAAGATCAGACT-AGACCCAGGGTTACGACAGCAGGATCGAC
* * * *
19878013 AGCACGCAGAGGGGGACCCGACCGATTCTCAGCTTACGCATCCCGCCCCTCTGGCTGGCTGAATG
65 AGCACGCAGAGGGGGACCCGACCAATGCTCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAACG
* * *
19878078 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAA
130 CCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
19878134 G
1 G
19878135 ATCAGACCAG
Statistics
Matches: 155, Mismatches: 29, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
184 1 0.01
185 153 0.99
186 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACGAAGTTCATTCCCAGCCTAAGATCAGACTAGACCCAGGGTTACGACAGCAGGATCGACA
GCACGCAGAGGGGGACCCGACCAATGCTCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAACGC
CCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19879902 original size:26 final size:26
Alignment explanation
Indices: 19879866--19879918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19879856 GTTAACTTAG
19879866 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTGATTCCCAGTCTAA
* *
19879892 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTGATTCCCAGTCTAA
19879918 G
1 G
19879919 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTGATTCCCAGTCTAA
Found at i:19883141 original size:26 final size:26
Alignment explanation
Indices: 19883087--19883143 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
19883077 TTTCTTCCGA
* ***
19883087 AAAAATTTTAAAAAATCCTGAACCGT
1 AAAAATTTTAAAAAATCATGAAAAAT
*
19883113 AAAAATTTTCAAAAATCATGAAAAAT
1 AAAAATTTTAAAAAATCATGAAAAAT
19883139 AAAAA
1 AAAAA
19883144 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.11, G:0.05, T:0.25
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCATGAAAAAT
Found at i:19883544 original size:26 final size:26
Alignment explanation
Indices: 19883514--19883566 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19883504 GTTGACTTAG
*
19883514 GCATACGGAGTTCATTCACAGTGTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
19883540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
19883566 G
1 G
19883567 ATCGGATGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:19883857 original size:903 final size:900
Alignment explanation
Indices: 19881752--19895336 Score: 15700
Period size: 903 Copynumber: 15.4 Consensus size: 900
19881742 AGGCACAGTT
19881752 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC---GGTTGCGG-AGCACAT-CTGGGCT-
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * **
19881811 GGGCATGTGCTGGTG-CACATTTTTCTTC-ACCGGGCACCATCGCCGGAAAATCTA---GAGAAC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATC-ACCGGAGAAC
* * * *
19881871 C-AAACG--GGCATTGAGGTT-CG-CGAT-GAGGGTGGGCCGGAGAGGGTGTGCGGGTAC-TGAT
129 CTGACCGACGGCATTGGGGTTCCGACGATCG-GGG-GGGCCGG-G-GGGTGTGC--GCACATGAT
* * *
19881929 GTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACT
188 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
19881994 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGA
253 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
19882059 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTT
318 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* **
19882124 TTGTGCATGCCAACAAAAATACAATGATC-CTGTCTACCAAGTTTGGGTTCAAAACTCCTTCCGA
383 TTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
19882188 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCG
447 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
19882253 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
512 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
19882318 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGACT
577 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
* * *
19882383 TGCGCATCCCGTCTCTCTGGCCGGCTTATTGCCCGCCCACCTGCCCG-C-C-CGTTTCGTCGGTT
642 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCCGCTCGTTTCGTCGGTT
* ** * *
19882445 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGAACTGAGGGTTACAGCAGCAAG
706 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCAGCAGG
* * * * * * * * * *
19882510 ATCAGTAGCACACAGAGGGGGACCTGACCGATCCTCAGCTTGCACATCCCACTCCTCTGGCCAGC
771 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
19882575 TGAGCGCCCACACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTA
836 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
19882640 TATGGAGTTCATTCCCAGTCTAAGATCAGGCCAGACTGAGGGTTGCGGTAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATC-GGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* ** *
19882705 GGGCATGTGCTGGTGCGGCATTTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGTCTGAGAA
65 GGGCATGTGCTGGTGCCGCA-TTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAGAA
* * * * * *
19882769 CCTGACTGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCAGGGGGTGTACGCACAAGATGTGCG
128 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
19882833 ATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATTAAACCTTGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
19882898 CCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATAG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
19882963 GGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** * *
19883028 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGAAAAAATTTCTTCCGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
19883093 TTTAAAAAATCCTGAACCGTAAAAATTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGC
453 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
19883158 CAT-AGAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCAA
518 CATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-A
* * * *
19883222 TT-CCATGCAGAAATATGAAGATGTACCTAAACCCAGCTACCACCTTATCGATCCACGACTTGCG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * * *
19883286 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTTCGCCCGCCAACTCGTTTCGTCAGTTGGC
646 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCC-GCTCGTTTCGTCGGTTGGC
* * * *
19883351 TTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACCGAACCAAGGGTTACAGTAGCAAGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCAGCAGGATC
* * * * * ** * * * *
19883416 GGTAGCATGCAGAGGGGGAGCCGACTGATCCCTGAATTGGGCATCCCACCCCTTTGGCCGACTGA
774 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
19883481 GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTGTAAGCA
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
19883543 TACGGAGTTCATTCCCAGTCTAAGATCGGATGAGACCAAGGGTTGTGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACG-GACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
19883608 GGGCATGTGCTGGTGCGGCATTTTTCTTCGTCGGGGCACCATTGCTGGAGCACCACCGGAGAACC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACC
* * *
19883673 TGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAAT
130 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
19883738 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
19883803 GCTTAATGAGCTTTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
19883868 ACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * ** ** *
19883933 TGCCAAAAAAAATACAATGATCTTGTCTACCAAGTTTGGGTTCAAAACTCTTTCCGAAAAAATTT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
19883998 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAAAAAACGAGTCGTCTTGCC
455 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCC
* *
19884062 ATGAAACTTCATGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** *
19884127 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCTCAT
584 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
* *
19884192 CCCGTCTCTCTGGCCGGCTTAGTGCCCGCCCGCCCGCCCG-C-C-CGTTTCGTCGGTTGGCCTAG
649 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAG
* ** *
19884254 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGAACTGAGGGTTGCAGCAGCAAGATCGGCA
713 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCAGCAGGATCGGCA
* * * * * * ** *
19884319 GCACACAGAGGGGGACCCGACCGATCCTCAGCTTGCACATCCCGTCCTTCTGGCCAACAGAGCGC
778 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
19884384 TCGTACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCA-T-T---C-
843 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
** * *
19884436 TA---AG---ATT--GGGTC--AGAT----C--A---AGGGTTGCGGTAGCACATGCTGGGCTTG
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
**
19884482 GGCATGTGCTGGTGTGGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAG-A--ACC--AG-A-C
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAGAACC
* * *
19884539 TG---G-CGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTACGCACAAGATGTGCGAT
130 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
19884600 GGGTGCTAGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATTAAACCTTGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19884665 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATAGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
19884730 ACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
19884795 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCCAAAAAATTT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
19884860 AAAAAAATCCTTAACCTTAAAAATTTTCAAAAATCATGAAAAATA-AAAACGAGTCGACTTGCCA
455 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
19884924 T-AGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATT
520 TGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATT
* *
19884988 -CCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
583 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
* * * * *
19885052 TCCCGTCTCTCTGGTCGGTGTAGTGCCCGCCCGTTCGCCCGCCAACTCGTTTCGTTGGTTGGCTT
648 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCC-GCTCGTTTCGTCGGTTGGCTT
* * * * * * * *
19885117 AGGCATACGGAGTTCATTCCCAGTCTATGATGAGACCAAATCAAGGGTTACGGTAGCAGGATCAG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCAGCAGGATCGG
* * * ** * *
19885182 TAGCATGCAGAGGGGGACCCGACCGATCCCTGAATTGGGCATCCCACCCCTCTGGCCGGCTGAGC
776 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
19885247 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCA
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
19885307 TACGGAGTTCATTCCCAGTCTAAGATCGGACGGGACCAAGGGTTGTGGTAGCACATGCTGGGCTT
1 TACGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
19885372 GGGCATGTTCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCACCGCCGAAGAACC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACC
*** * *
19885437 TGACCGGTAGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC-A-
130 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
19885500 --ATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
19885563 CCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
19885628 ACACTATTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATGTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
19885693 TGCCAACCAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* ** * * * * *
19885758 TAAACAAT-CTCGAACCACAAAAAATTTCAAAAATCGTGAAAAATAGAAAATGAATTGTCTTGCC
455 TAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
19885822 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** * * * * * *
19885887 GCACATAGAAATTTGAAGATTTGCCTAAACCCACATACCACACTATCGATCCACGGCTTGCACAT
584 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
* * *
19885952 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-CAC-TCGCTCGTTTCGTCGGTTGGCTTAGG
649 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** * * * * *
19886015 CATACGGAGTTTCATTCCCAGTCCAAGATCGGATTGGATCGAGGGTTGCTA-CAGCAGGCTGGGC
714 CATACGGAG-TTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGC-AGCAGCAGGATCGGC
* * ** * * * * * *
19886079 AGCATGCAGAGGGTGACCCGGTCAATCCCCGGCTTGCGAATCCTGGCCCTCTGGCCGGTTGAACG
777 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
19886144 CCCGCACGCTCGTTTCGTGGGTTGTCTTGGGCATACGGAGTTCATTCCCAG--T---C-
842 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
*
19886197 T----A----A-T---A-T-T-AGA-C---CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * *
19886243 AGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCG-TCGGAGCATCGCCGGAGAACC
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAGAACC
* * *
19886307 TGACC-A-GTGCAATTGGGGTTCCGACGATCGAGGGAGCCAAGGTGGGGTGTGCACACATGATGT
130 TGACCGACG-GC-ATTGGGGTTCCGACGATCGGGGGGGCC--GG-GGGGTGTGCGCACATGATGT
* *
19886370 GCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19886435 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19886500 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
19886565 GTGCATGCCAACCAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
19886630 AATTTTAAACAATAT-C-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
450 AATTTTAAA-AA-ATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
19886693 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCAGAAAAATG
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
19886758 GCATTGGCATGCAGAAATTTGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCAC-AGCT
578 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CT
* * * *
19886822 TGTGCATCCTGTCTCTCTAGCCGGCGTAGTGCCCGCCCGTCCG--C-CCGCTCGTTTTGTCGGTT
642 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCGCTCGTTTCGTCGGTT
* * * * * * *
19886884 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAA-GGTTGCGGTAGTAG
706 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACC-AAGGGTTGCAGCAGCAG
* * * * ** *
19886948 GATCTGCAGCATGCATAGGGGGACCTGGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGG
770 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
19887013 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAATTCTTTCCCAGTCTAAGC
835 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
19887078 A
900 A
* * * * * * *
19887079 TACGGAGTTCATTGCCAGTCTAAAATCGAACCAGACTGAGGGTTGTGGCAGCACATGCTGGGTTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
19887144 GGGCATGTGCTCGTGCCACATTTTTCTTCGTCGGGG------CGC-----CATCATCGGAGAACT
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACC
* * *
19887198 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGTGGCTGTGCGCACATAATGTGT
130 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGG-GG-TGTGCGCACATGATGTGC
*
19887263 GATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19887328 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19887393 GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * * * *
19887457 ACATGTGAACAAAAATACAAGGATCACGTCCACCATGTTTAGGGCCAAAACTCCTTCCAAAAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
19887522 TTTAAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
452 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19887587 CCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT---A--C-------TGGCA-
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
19887639 ---C--GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCAC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
** * ** * * *
19887699 ATCTTGTCTCTCTGGCCGGTGTAGTG--C-CCTTCCGCCCGCCAACTCGTTTTGTCGGCTGGCTT
647 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTT
* * * * *
19887761 AGGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGACGGGACCAAGGGTTGCGGCAGCAGGATCA
711 AGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGAACCAAGGGTTGCAGCAGCAGGATCG
* * ** * * * ** * * *
19887825 GTAGCACGCAGAGTGGGACTTGGCCGATCCTCAGCTTGCGCATCCCATCCCTCTAGTCGACTGAG
775 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
19887890 CGCCCGCATGCTCGTTTCATGCGTTGACTTAGGCATACAGAGTTCATTCCCAG--T---C-
840 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
19887945 TA---AG---ATT----G-----GATC--A--GACTGAGGGTTGTGGCAGCACATGCTGGGCTCG
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* *
19887991 GGCATGTGCTGGTGTCGCATTTTTCTTCGTC-GAGCACCA----T----CAT---CGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACCT
* * *
19888044 GACCGACGGTAATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGA
131 GACCGACGG-CATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
* *** * *
19888109 TAGGTGCTGGTA-TTCAACCTTATATTGGCCCCCTATCCCGCATCAAACCTGGAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
19888173 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19888238 GACACTTTTTTCAAATGGTCACAAAATCTTGTACA-----A----TT--C-GAGTTTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
19888291 ATGCCAACAATAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAAATCCTTTCGAAAAAAGT
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
19888356 TTAAAAAATTC-GAAACCGTAAAAAGTTGCAAAAATCATGAAAAATAAAAAAAGAGTCGTCTTAC
454 TTAAAAAATCCTG-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
19888420 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
19888485 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTCCCACCCTATCGATCCACGGCTTGCGCA
583 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
* * * ** *
19888550 TCTCGTATCTCTGGCCGGCGTAGTCCCCGCCCGCCCGCCCGCATCTCGTATC-TC----GG---A
648 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * * * * * * ***
19888607 -CCAAACTGAGGTT--TGCGGCAG-C-AGGATC-GGCAGCACACAGAGGG--GGACCCGGTCGAT
712 GGCATACGGA-GTTCATTC-CCAGTCTAAGATCAGACCGAAC-CA-AGGGTTGCAGCAGCAGGAT
**** ** * ** ** * * ** * * * ****
19888664 CCTTGGCTTGC-GCA-TGCCACCC--CTC--TGGCCGGCTGAGCGCCTGCATGCTCATTTCATGG
773 CGGCAGCACGCAG-AGGGGGACCCGAC-CGATCCCCGGCT-TGCGCAT-CCCGCCCCTCTGGCCG
* ** * * * * * ** ** **
19888723 GTTGA-----CTTA-G-GCATAT-G-GAGTTCA-TT-CCCAGT-CCAAG--CATAT-GGAGT-T-
834 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA-TACGGAGTTCAT-TCCCAGTCTA
19888771 --CA
897 AGCA
* *
19888773 T--------C---CCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * **
19888827 GGG-ATGTGCTGGTGTCACATTTTT-TTGGCCAGGGCACCATCG-TCGGAGCATCGTCGGAGAAC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAGAAC
* * * * *
19888889 CTAACCGGCGGCACTAGGGTTCCGGCGATC-GGGGGGCCGGGGGGGGGTGTGCGCACATGATGTG
129 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATGTG
*
19888953 CGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19889018 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19889083 GGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTA
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19889148 CGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATT-TGAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAA
* * *
19889212 AATTTTAAAAAATCCCT-AACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
450 AATTTTAAAAAAT-CCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
19889276 TTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
19889341 CATTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTCG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * *
19889406 TGCATCCCGTCTCTCTGGCCTGTGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTG
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCC-GCTCGTTTCGTCGGTTG
* * * * * ** *
19889471 GCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAAGA
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCAGCAGGA
** * * * * *
19889536 TCGATAGCACGTAGAGGGGGACCCGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTAGCCGGCT
772 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
19889601 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTTGGCATACAGAGCTCATTCCCAGTCTAAGCA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * ** * *
19889665 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTTTGGCAGTACATGCTGGGTTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
19889730 GGGCATGTTCTGGTGCCGCATTTTTCTTCGTCAGTGCACCAT--C----G-----CCGAAGAACT
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACC
* * * *
19889784 TGACC-AGCGGCATTGGGGTTCCAACGATCAGGGGGGCCGGGGGGGCTGTGCGCACATAATGTGT
130 TGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGC
* *
19889848 GATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19889913 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCGTTAAAGTGTCTGAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** *
19889978 GCAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
19890043 GCATGCCAACAAAAATGCAAGGATCACATCTACAAACTTTGGGGCCAAAACTCCTTTC-AAAAAT
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-
* * * * **
19890107 ATTTTAAAAAATCCCGACCCATAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
451 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19890172 GCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
19890237 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* ** * *
19890302 CATGCCGTCTCTCTATCCGGCATAGTGCCCGCTCGCC-CTTCCGCCCGCTCGTTT-GATCGGTTG
646 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGC--CCG-CCGCTCGTTTCG-TCGGTTG
* * ** * * *
19890365 GCTTAGGGATACGGAGTTCATTCCCAGTCCAAGATCAGATTGGATCGAA-GGTTGC-GATAGCAG
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACCAAGGGTTGCAG-CAGCAG
* * * * *
19890428 GATGGGCAGCAAGAAGAGGGGGACCCGATCGATCCCCGGCTTGCGAATCCCGCCCCTCTGGCCGG
770 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* ** * * *
19890493 TTGAATGCCCGTACGCTCGTTTCGTGGGTTGTCTTGGGCATACGGAGTTCATTCCCAGTCTAAGC
835 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
19890558 A
900 A
* * * *
19890559 TACGGAGTTCATTCCTAGTCTAATATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT-
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* *
19890623 GGAACATGTGCTGGAGCCGCATTTTTCTTCGTCGGGGCACCAT--C----G--T---CGGAGAAC
65 GG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAAC
* * ** * *
19890677 CTGACC-AGTGGAATTGGGGTTCCGACGATCGAAGGAGCCGAGGGGGGGTGTGCACACATGATGT
129 CTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATGT
** *
19890741 GTAATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
19890806 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTAAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * **
19890871 TGGGGACACTTTTTTCAAATTGTCACAAAACCTTGTACACTTTGGGTTTTTAGCTGACCTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
19890936 ATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAGAAA-TCCTTCCGAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAA
*
19891000 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
449 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
19891065 TTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
19891130 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * ** * * * * * * *
19891195 CGCATCCCGTCTCACAGGATGGCATAGTG-CCGCCCGCC-CGC-CCACTCATTTTGTCGGCTCGC
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCGCTCGTTTCGTCGGTTGGC
** * * * * ** *
19891257 TTAGGTGTACGGAGTTCATTCCTAGCCTAAGATCAGACCGGACCAAGGGTCGTGGCAGTAGGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCAGCAGGATC
* * *
19891322 GACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGA
774 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
19891387 GCTCCCGCACGCTCGTTTCATGGGTTGACTT-----T---G-G--CA-T---A--C--AG-A
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
19891429 T------TTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATACTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
19891488 GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACTATCG-TCGGAGCATCGCCGAAGAAC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAGAAC
* * * * * *
19891552 CTGACCGGCGGCAATGGGGTTCCGATGATTGGGTGGGCCGGGGGGGTGTGCGCACATGATGTGTG
129 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
*
19891617 ATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
** *
19891682 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGCTAAAGTGTTTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
19891747 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** *
19891812 CATGCCTACAAAAGTACAAGGATCACGTCTTTCAAGTTTGGCGCCAAAACTCCTTCC-AAAAGAA
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AA
* ** *
19891876 TTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
452 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19891941 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCTATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * *
19892006 TGGCGCACAGATATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGACTTGCGC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * *
19892071 ATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGCCTGCCCGCCCGTTCGTTTCGTCGGATGGCT
647 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCG-CCGCTCGTTTCGTCGGTTGGCT
* * * * *
19892136 GAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGAAAGTAGCAGGATC
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTG-CAGCAGCAGGATC
* * * *
19892201 GACAGCATGTAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
774 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
19892266 GCGCCCGCACGCTCATTTCATGTGTTGATTTAGGTATACGGAGTTCATTCCCAGTCTAAGCA
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
19892328 TACGGAGTTCATTCCCAGCCTAAGATCGGATCGGATCGAGGGTTACGGTAGCACATGCTGGCCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
** * * * *
19892393 GGGCATGTGCTGGTGCCATATATTTCTTTGCCGGGGCACCATCG-TCGGAGCATCACCAGAGAAC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAGAAC
* * * *
19892457 CTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGACCGGGGGGTGTGCACACATGATGTGCG
129 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCG
* * *
19892522 ATGGGTGCTGGTACTTGGCCCTTATTTTGG-TCCCTATCCCTCATCAAACCTTGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
19892586 CCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCTGTAGGCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
19892651 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
19892716 CATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTTGGGCAAAAACTCCTTCCGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
19892781 TTTAAAAAATCCCGAACGGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* ** *
19892846 CATGAAACTTCACGTGAAGTCTTAACAGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
19892911 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATTCATGGCTTGCGCA
583 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
** * * * * *
19892976 TCCCGTCTCTCTTACCGACGTAGTGCCCGCTCGCC-CGC-CCGCTCATTTCGTAGGTTGGCTTAG
648 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *** * *
19893039 GAATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGATTGAGGGTTGCACCAGCAGGATCGACA
713 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCAGCAGGATCGGCA
* * * * * * *
19893104 GCACGTAGAGGGGGACCCGATCGATCCCAGGGTTACG-ATCCCGCCCCTCTGGCCGGCTTAGCAC
778 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
19893168 CCGCATGCTCGTTTCATGCGTTGACTTAGGCATACAGAGTTCATACCCAGTCTAAGCA
843 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* ** * * * * * *
19893226 TACGGAGTTCGTTTGCAGTTTAAGATCAGATGGACTGAGGGTTGTGGTAGCACATGCTGGGCTCG
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * **
19893291 GGGATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCT-GAGCATCGTCGGAGAACC
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GCTGGAGCATCACCGGAGAACC
* * *
19893355 TGACCGACGGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGTGTGCACACATAATGTGCGAT
130 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
19893420 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
19893485 TCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTTTAAATGGCG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
19893550 ACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
19893615 TGCCAACAAAACTACAAGGATCATGTCTTCCAATTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * ** *
19893680 AAAAAAAT-CTCAAACCGCAAAGGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
455 TAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
19893744 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGGTATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * ** * *
19893809 CCATGCAGAAATATGAAGATGAGTGTAAACCCACCTACCACCCGACCGATCCACGACTTGCGCAT
584 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
* * * *
19893874 CCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCCCGTCCGCTCGTTTCATCGATTGGCTTA
649 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTA
* * ** ** *
19893939 GGCATACAGAGTTCATTCCCAGCCTAAGATCAGACC-AGACTGAGGGTTGTGGTAGCAGGATCGG
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCAAGGGTTGCAGCAGCAGGATCGG
* * ** * *
19894003 CAGCATGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCTCGTCTGGCCGG-TAGAG
776 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAG
* * *
19894067 CACCCGCACTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
840 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * ** *
19894128 TACGGAGTTCATTCCCAGCCTAAGATCGGATCAGACCGAGGGTTATGGTAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
19894193 GGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGCCGTAGAACC
65 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACC
* * * * *
19894258 TGA-CTAGCGGCATTGGGGTTCCGATGATCGGTGGGGCCGGGGGGTGTGCGCACATGGTGCGCGA
130 TGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
19894322 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
19894387 CCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19894452 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAAG-TTTTAGCTGAATTTTTTTGTG
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTG
* * * *
19894516 CATGCCAA-AAAAATAAAAGGATTACCTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** ** * * *
19894580 TTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACAAGTCGTTTTGC
453 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
19894645 CATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
19894710 GTCATGGAGAAATATGAAGATGTGCCTAAACTCACTTACCACCCTATCGATCCAC-AGCCTGTGC
583 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGC
* ** * * * * *
19894774 ATCCCATCTCTCTGGCCAACGTAGTG-CC-CAC-CCACCCGCCAACTCGCTTCGTCGGTTGGCTA
647 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTT
* ** * * * *
19894836 AGGCATACGGAGTTCATTCCCAGTCTAGGATTGGATC-AGACCAAGGGTTAC-GACAGCAAGATT
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCAAGGGTTGCAG-CAGCAGGATC
* * * * ** * * * * * * * * *
19894899 AGCAGCATGCAGAGTGGGACCTGGTCGATCCTCGACTTGTGCCTTCCGTCCCTTTGGCTGGTTGA
774 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
19894964 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-A
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
19895025 TA---AG---A-T--C-G-----GA-C---CAGACCGAGGGTTGCGACAACACATGCTGGGCTCG
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
19895071 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC-ATCGGAGCATTACCGGAGAACC
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAGAACC
* * * * *
19895135 TGACCGCCCGCATTGGGGTTCCGATGATCAGGGGGGCCGGGGGGTGTGCGGACATGATGTGCGAT
130 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
19895200 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAAAACCCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
19895265 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCT-CCAGTAGCCGTTAAAGTGTCTGAAATGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTG-CTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
19895329 GACACTTT
324 GACACTTT
19895337 GTAGACACCC
Statistics
Matches: 10926, Mismatches: 1384, Indels: 785
0.83 0.11 0.06
Matches are distributed among these distances:
826 5 0.00
827 4 0.00
828 6 0.00
829 3 0.00
830 5 0.00
831 1 0.00
832 170 0.02
833 2 0.00
834 3 0.00
835 7 0.00
836 27 0.00
837 40 0.00
838 6 0.00
839 12 0.00
840 5 0.00
841 20 0.00
842 4 0.00
843 120 0.01
844 73 0.01
845 35 0.00
846 104 0.01
847 53 0.00
848 149 0.01
849 1 0.00
850 76 0.01
851 3 0.00
852 3 0.00
853 9 0.00
854 8 0.00
856 1 0.00
857 2 0.00
859 1 0.00
860 285 0.03
861 178 0.02
862 333 0.03
863 5 0.00
864 85 0.01
865 167 0.02
866 8 0.00
867 3 0.00
868 5 0.00
869 9 0.00
870 131 0.01
871 16 0.00
872 261 0.02
873 565 0.05
874 20 0.00
875 51 0.00
876 149 0.01
877 755 0.07
878 74 0.01
879 104 0.01
880 2 0.00
881 9 0.00
882 9 0.00
883 5 0.00
884 6 0.00
885 9 0.00
886 7 0.00
887 7 0.00
888 41 0.00
889 12 0.00
890 359 0.03
891 269 0.02
892 18 0.00
893 32 0.00
894 820 0.08
895 493 0.05
896 223 0.02
897 546 0.05
898 569 0.05
899 839 0.08
900 81 0.01
901 113 0.01
902 539 0.05
903 1112 0.10
904 436 0.04
905 205 0.02
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACCT
GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCAGCAGGATCGGCAGCA
CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19885314 original size:26 final size:26
Alignment explanation
Indices: 19885278--19885330 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19885268 GTTGACTTAG
*
19885278 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19885304 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19885330 G
1 G
19885331 ATCGGACGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19889676 original size:26 final size:26
Alignment explanation
Indices: 19889636--19889688 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19889626 GTTGACTTTG
19889636 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
* *
19889662 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
19889688 G
1 G
19889689 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:19890559 original size:26 final size:26
Alignment explanation
Indices: 19890530--19890581 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19890520 GTTGTCTTGG
19890530 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19890556 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19890582 TATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19890644 original size:894 final size:887
Alignment explanation
Indices: 19888619--19895336 Score: 8115
Period size: 894 Copynumber: 7.5 Consensus size: 887
19888609 AAACTGAGGT
* * ** * ** * *
19888619 TTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCTTGGCTTGCGCATGCCAC
1 TTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * *
19888684 CCCTCTGGCCGGCTGAGCGCCTGCATGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATT
66 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * * *
19888749 CCCAGTCCAAGCATATGGAGTTCATCCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGC
131 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * * *
19888814 ACATGCTGGGCTCGGG-ATGTGCTGGTGTCACATTTTT-TTGGCCAGGGCACCATCGTCGGAGCA
196 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCA---TC-G-G-A
* * * * *
19888877 TCGTCGGAGAACCTAACCGGCGGCACTAGGGTTCCGGCGATCGGGGGGCCGGGGGGGGGTGTGCG
255 -C--CGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGCC---GGGGGGTGTGCG
*
19888942 CACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
314 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
19889007 CGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
379 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
19889072 GTGTCTAAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCT
444 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
** *
19889137 GAATTTTTTTACGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
509 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
19889202 CATTTGAAAAAATTTTAAAAAATCCCTAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA
574 C-TTTCAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
19889267 CGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
638 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
19889332 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATC
703 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
19889397 CACGGCTCGTGCATCCCGTCTCTCTGGCCTGTGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTT
768 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG-CC-CCCGCCCGCTCGTTT
* * *
19889462 CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGG
830 -GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAAGG
* * * * ** * *
19889522 TTGTGGCAGCAAGATCGATAGCACGTAGAGGGGGACCCGGCCGATCCCCGACTTGTGCATCCCGC
1 TTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * * * *
19889587 CCCTCTAGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTTGGCATACAGAGCTCATT
66 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * ** *
19889652 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTTTGGCAGT
131 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * * *
19889717 ACATGCTGGGTTCGGGCATGTTCTGGTGCCGCATTTTTCTTCGTCAGTGCACCATC-G-CCGAAG
196 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGGACCGGAG
* * *
19889780 AACTTGACCAGCGGCATTGGGGTTCCAACGATCAGGGGGGCCGGGGGGGCTGTGCGCACATAATG
261 AACCTGACCAGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGG-TGTGCGCACATGATG
* * *
19889845 TGTGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTC
323 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
19889910 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCGTTAAAGTGTCTGAA
388 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** *
19889975 ATGGCAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
453 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
19890040 TGTGCATGCCAACAAAAATGCAAGGATCACATCTACAAACTTTGGGGCCAAAACTCCTTTCAAAA
518 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAA
* * * * *
19890105 ATATTTTAAAAAATCCCGACCCATAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTC
583 A-ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
19890170 TTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
647 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
19890235 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
712 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** *
19890300 CGCATGCCGTCTCTCTATCCGGCATAGTGCCCGCTCGCCCTTCCGCCCGCTCGTTTGATCGGTTG
777 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CGCCC--CCGCCCGCTCGTTTG-TCGGTTG
* * **
19890365 GCTTAGGGATACGGAGTTCATTCCCAGTCCAAGATCAGATTGGATCGAAGG
838 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAAGG
* * * * * *
19890416 TTGCGATAGCAGGATGGGCAGCAAGAAGAGGGGGACCCGATCGATCCCCGGCTTGCGAATCCCGC
1 TTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* ** * * * * *
19890481 CCCTCTGGCCGGTTGAATGCCCGTACGCTCGTTTCGTGGGTTGTCTTGGGCATACGGAGTTCATT
66 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * *
19890546 CCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAATATCAGACCGGACCGAGGGTTACGGCAGC
131 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * * *
19890611 ACATGCTGGGCT-GGAACATGTGCTGGAGCCGCATTTTTCTTCGTCGGGGCACCATC-G-TCGGA
196 ACATGCTGGGCTCGG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGGACCGGA
* * * * *
19890673 GAACCTGACCAGTGGAATTGGGGTTCCGACGATCGAAGGAGCCGAGGGGGGGTGTGCACACATGA
260 GAACCTGACCAGCGGCATTGGGGTTCCGACGATCG-GGGGGCC---GGGGGGTGTGCGCACATGA
** *
19890738 TGTGTAATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
321 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
19890803 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTA
386 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * * **
19890868 AAATGGGGACACTTTTTTCAAATTGTCACAAAACCTTGTACACTTTGGGTTTTTAGCTGACCTTT
451 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
19890933 TTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAGAAA-TCCTTCCG
516 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTTC-
* *
19890997 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
579 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
19891062 GTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAA
644 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
19891127 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
709 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * ** * * * * * *
19891192 TTGCGCATCCCGTCTCACAGGATGGCATAGTG-CCGCC-CGCCCGCCCACTCATTTTGTCGGCTC
774 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCCCGCCCGCTC-GTTTGTCGGTTG
** * * *
19891255 GCTTAGGTGTACGGAGTTCATTCCTAGCCTAAGATCAGACCGGACCAAGGG
838 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAA-GG
* * * * * * *
19891306 TCGTGGCAGTAGGATCGACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
1 TTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * *
19891371 CCCTCTGGTCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTTGACTT-----T---G-G--CA-T
66 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
** *
19891424 ---A--C--AG-AT------TTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGC
131 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * * * *
19891475 ACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACTATCGTCGGAGCA
196 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCAC---CATCGGA-C-
* * * *
19891540 TCGCCGAAGAACCTGACCGGCGGCAATGGGGTTCCGATGATTGGGTGGGCCGGGGGGGTGTGCGC
256 -CG--G-AGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGG-GGGCC-GGGGGGTGTGCGC
* *
19891605 ACATGATGTGTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
315 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
**
19891670 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGCTAAAG
380 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
19891735 TGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTG
445 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * ** *
19891800 AATTTTTTTGTGCATGCCTACAAAAGTACAAGGATCACGTCTTTCAAGTTTGGCGCCAAAACTCC
510 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
19891865 TTCCAAAAGAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
575 TTTCAAAA-AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * *
19891930 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCTAT
639 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*** * *
19891995 AAAAATGGCATTGGCGCACAGATATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCC
704 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
19892060 ACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGCCTGCCCGCCCGTTCGTTTC
769 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCC--CCCGCCCGCTCGTTT-
* * * *
19892125 GTCGGATGGCTGAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCAAGGG
830 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAA-GG
** * * * *
19892184 TTGAAAGTAGCAGGATCGACAGCATGTAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCG
1 TTGCGA-CAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * *
19892249 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGTGTTGATTTAGGTATACGGAGTTCAT
65 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
19892314 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGGATCGGATCGAGGGTTACGGTAG
130 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* ** * * * *
19892379 CACATGCTGGCCTCGGGCATGTGCTGGTGCCATATATTTCTTTGCCGGGGCACCATCGTCGGAGC
195 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCA---TC-G-G-
* * * * *
19892444 ATCACCAGAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGACCGGGGGGTGTGCA
254 ---ACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCG
* *
19892509 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGG-TCCCTATCCCTCATCAAACCT
314 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
19892573 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCTGTAGGCATTAAA
379 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
19892638 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
444 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * *
19892703 GAATGTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTTGGGCAAAAACTC
509 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
19892768 CTTCCGAAAAAATTTTAAAAAATCCCGAACGGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
574 CTTTC-AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* ** *
19892833 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAACAGACCATTGTGTGAATTTACAAGCCA
638 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
19892898 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATT
703 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* ** * *
19892963 CATGGCTTGCGCATCCCGTCTCTCTTACCGACGTAGTGCCCGCTCG--CCCGCCCGCTCATTTCG
768 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CGCCCCCGCCCGCTCGTTT-G
* * * * *
19893026 TAGGTTGGCTTAGGAATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGATTGAGGG
831 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAAGG
* * *
19893084 TTGC-ACCAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCAGGGTTACG-ATCCCG
1 TTGCGA-CAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * * * * *
19893147 CCCCTCTGGCCGGCTTAGCACCCGCATGCTCGTTTCATGCGTTGACTTAGGCATACAGAGTTCAT
65 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * ** * * * * *
19893212 ACCCAGTCTAAGCATACGGAGTTCGTTTGCAGTTTAAGATCAGA-TGGACTGAGGGTTGTGGTAG
130 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* *
19893276 CACATGCTGGGCTCGGGGATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCTGAGC
195 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCA-C--CATC-G-G-
* *
19893341 ATCGTCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGTGTGCA
254 A-C--CGGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCG
* *
19893405 CACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCT
314 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
19893470 CGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAA
379 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
19893535 GTGTTTTAAATGGCGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCT
444 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * *
19893600 GATTTTTTTTGTGCATGCCAACAAAACTACAAGGATCATGTCTTCCAATTTTGGGGCCAAAACTC
509 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * ** * *
19893665 CTTCTGAAAAAATTTAAAAAAATCTCAAACCGCAAAGGGTTTCGAAAATCATGAAAAATAGAAAA
574 CTT-TCAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
19893730 CGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
638 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * ** * *
19893795 TAAAAAGGGTATTGCCATGCAGAAATATGAAGATGAGTGTAAACCCACCTACCACCCGACCGATC
703 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
19893860 CACGACTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCCCGTCCGCTCGTTT
768 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-G-CC-CCCGCCCGCTCGTTT
* * * * * *
19893925 CATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCAGACCAGACTGAGGG
830 -GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAAGG
* ** * * *
19893985 TTGTGGTAGCAGGATCGGCAGCATGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGC
1 TTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * * * *
19894050 TCGTCTGGCCGG-TAGAGCACCCGCACTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
66 CCCTCTGGCCGGCT-GAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * ** *
19894114 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGGATCAGACCGAGGGTTATGGTAG
130 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* *
19894179 CACATGCTGGGCTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGC
195 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCA-T--CGGA-C
* *
19894244 ATCGCCGTAGAACCTGACTAGCGGCATTGGGGTTCCGATGATCGGTGGGGCCGGGGGGTGTGCGC
256 --CG--G-AGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGC
* *
19894309 ACATGGTGCGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
315 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
19894374 AAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
380 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
19894439 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAAG-TTTTAGCT
445 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCT
* * *
19894503 GAATTTTTTTGTGCATGCCAA-AAAAATAAAAGGATTACCTCTACCAAGTTTGGGGCCAAAACTC
509 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
19894567 CTTCTGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAA
574 CTT-TCAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * *
19894632 CAAGTCGTTTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
638 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
19894697 TAAAAATGGCATTGTCATGGAGAAATATGAAGATGTGCCTAAACTCACTTACCACCCTATCGATC
703 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * ** * * ** *
19894762 CACAGCCTGTGCATCCCATCTCTCTGGCCAACGTAGTGCCCACC-CACCCGCCAACTCGCTTCGT
768 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCCCGCCCGCTCG-TTTGT
* * ** * * *
19894826 CGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAGGATTGGATCAGACCAAGGG
832 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAA-GG
* * * * * * * * * * * * *
19894883 TTACGACAGCAAGAT-TAGCAGCATGCAGAGTGGGACCTGGTCGATCCTCGACTTGTGCCTTCCG
1 TTGCGACAGCAGGATCGA-CAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * * * * * * *
19894947 TCCCTTTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
65 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * *
19895012 TCCCAGTCTAAG-ATA---AG---------A-TC---G----GACCAGACCGAGGGTTGCGACAA
130 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* *
19895056 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGC
195 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCA-C--CATC-G-G-
* *
19895121 ATTACCGGAGAACCTGACC-GCCCGCATTGGGGTTCCGATGATCAGGGGGGCCGGGGGGTGTGCG
254 ---ACCGGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCG
* *
19895185 GACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
314 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
19895250 CGAAAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCT-CCAGTAGCCGTTAA
379 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-CTGCCAGTAGCCATTAA
19895314 AGTGTCTGAAATGGGGACACTTT
443 AGTGTCTGAAATGGGGACACTTT
19895337 GTAGACACCC
Statistics
Matches: 5061, Mismatches: 631, Indels: 272
0.85 0.11 0.05
Matches are distributed among these distances:
864 83 0.02
865 2 0.00
867 3 0.00
868 1 0.00
870 2 0.00
871 2 0.00
872 9 0.00
873 455 0.09
874 5 0.00
875 37 0.01
876 2 0.00
877 260 0.05
878 70 0.01
879 99 0.02
880 4 0.00
881 2 0.00
882 2 0.00
883 1 0.00
884 2 0.00
885 2 0.00
887 1 0.00
888 1 0.00
889 3 0.00
890 147 0.03
891 5 0.00
892 3 0.00
893 23 0.00
894 810 0.16
895 456 0.09
896 74 0.01
897 510 0.10
898 273 0.05
899 52 0.01
900 74 0.01
901 114 0.02
902 350 0.07
903 495 0.10
904 429 0.08
905 187 0.04
906 7 0.00
907 1 0.00
908 1 0.00
910 1 0.00
911 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (887 bp):
TTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGGACCGGAG
AACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAT
TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCCCGCCCGCTCGTTTGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAAGG
Found at i:19892331 original size:26 final size:26
Alignment explanation
Indices: 19892301--19892351 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19892291 TGATTTAGGT
*
19892301 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGCCTAAGC
19892327 ATACGGAGTTCATTCCCAGCCTAAG
1 ATACGGAGTTCATTCCCAGCCTAAG
19892352 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGCCTAAGC
Found at i:19893616 original size:897 final size:898
Alignment explanation
Indices: 19891420--19895336 Score: 5204
Period size: 897 Copynumber: 4.4 Consensus size: 898
19891410 GTTGACTTTG
* * * * * *
19891420 GCATACAGATTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCGGA-TGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
19891485 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACTATCGTCGGAGCATCGCCGAAGA
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
19891550 ACCTGACCGGCGGCAATGGGGTTCCGATGATTGGGTGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
19891615 TGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19891680 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGCTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAAT
*
19891745 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
19891810 TGCATGCCTACAAAAGTACAAGGATCACGTCTTTCAAG-TTTGGCGCCAAAACTCCTTCC-AAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGG-GCCAAAACTCCTTCCGAAAA
* *
19891873 GAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
453 -AATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
19891938 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCTATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * *
19892003 CATTGGCGCACAGATATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGACTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * *
19892068 CGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGCCTGCCCGCCCGTTCGTTTCGTCGGATG
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-CC-GCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
19892133 GCTGAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGAAAGTAGCAGG
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTG-CAGCAGCAGG
* *
19892198 ATCGACAGCATGTAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
773 ATCGACAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-
* * * *
19892263 TGAGCGCCCGCACGCTCATTTCATGTGTTGATTTAGGTATACGGAGTTCATTCCCAGTCTAA
837 TGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19892325 GCATACGGAGTTCATTCCCAGCCTAAGATCGGATCGGATCGAGGGTTACGGTAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGCCTAAGATCGGAT-GGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * * *
19892390 CTCGGGCATGTGCTGGTGCCATATATTTCTTTGCCGGGGCACCATCGTCGGAGCATCACCAGAGA
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** *
19892455 ACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGACCGGGGGGTGTGCACACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTG
* * *
19892520 CGATGGGTGCTGGTACTTGGCCCTTATTTTGG-TCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19892584 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCTGTAGGCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAAT
*
19892649 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19892714 TGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTTGGGCAAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAA
* * * *
19892779 ATTTTAAAAAATCCCGAACGGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* ** *
19892844 GCCATGAAACTTCACGTGAAGTCTTAACAGACCATTGTGTGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
19892909 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATTCATGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
** * * *
19892974 CATCCCGTCTCTCTTACCGACGTAGTGCCCG-CTCGCCCGCCCGCTCATTTCGTAGGTTGGCTTA
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *** *
19893038 GGAATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGATTGAGGGTTGCACCAGCAGGATCGAC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGAC
* * * * *
19893103 AGCACGTAGAGGGGGACCCGATCGATCCCAGGGTTACG-ATCCCGCCCCTCTGGCCGGCTTAGCA
779 AGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-TGAGCA
* * * * *
19893167 CCCGCATGCTCGTTTCATGCGTTGACTTAGGCATACAGAGTTCATACCCAGTCTAA
843 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** * * *
19893223 GCATACGGAGTTCGTTTGCAGTTTAAGATCAGATGGACTGAGGGTTGTGGTAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGCCTAAGATCGGATGGACCGAGGGTTGCGGTAGCACATGCTGGGC
* * * * *
19893288 TCGGGGATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCTGAGCATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
** * *
19893353 CCTGACCGACGGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGTGTGCACACATAATGTGCG
131 CCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
19893418 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
19893483 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTTTAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGG
* * *
19893548 CGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
19893613 CATGCCAACAAAACTACAAGGATCATGTCTTCCAA-TTTTGGGGCCAAAACTCCTTCTGAAAAAA
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTT-GGGCCAAAACTCCTTCCGAAAAAA
* ** *
19893677 TTTAAAAAAATCTCAAACCGCAAAGGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
19893742 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGGTAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * ** * *
19893807 TGCCATGCAGAAATATGAAGATGAGTGTAAACCCACCTACCACCCGACCGATCCACGACTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * *
19893872 ATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCTGCCCGCCCGTCCGCTCGTTTCATCGATTGGC
650 ATCCCGTCTCTCTGGCCGA-CGTAGTGCCCG-C--CCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** ** *
19893936 TTAGGCATACAGAGTTCATTCCCAGCCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATC
* * * *
19894001 GGCAGCATGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCTCGTCTGGCCGGTAGA
776 GACAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGT-GA
* *
19894066 GCACCCGCACTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
19894125 GCATACGGAGTTCATTCCCAGCCTAAGATCGGATCAGACCGAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCGGAT-GGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * *
19894190 CTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGCCGTAGA
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
19894255 ACCTGA-CTAGCGGCATTGGGGTTCCGATGATCGGTGGGGCCGGGGGGTGTGCGCACATGGTGCG
130 ACCTGACCGA-CGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
19894319 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
19894384 ACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAAT
*
19894449 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAAG-TTTTAGCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTT
* * * * *
19894513 GTGCATGCCAA-AAAAATAAAAGGATTACCTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAA
* ** * * *
19894577 AATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACAAGTCGTTT
453 AATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19894642 TGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
19894707 ATTGTCATGGAGAAATATGAAGATGTGCCTAAACTCACTTACCACCCTATCGATCCAC-AGCCTG
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTG
* * * * * ** *
19894771 TGCATCCCATCTCTCTGGCCAACGTAGTGCCC-ACCCACCCGCCAACTCGCTTCGTCGGTTGGCT
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** * * *
19894835 AAGGCATACGGAGTTCATTCCCAGTCTAGGATTGGATCAGACCAAGGGTTAC-GACAGCAAGAT-
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAG-CAGCAGGATC
* * * * * * * * * * * * *
19894898 TAGCAGCATGCAGAGTGGGACCTGGTCGATCCTCGACTTGTGCCTTCCGTCCCTTTGGCTGGTTG
776 GA-CAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-TG
* * *
19894963 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
839 AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
19895023 G-ATA---AG---A-T--C-G-----GA-C-CA--GACCGAGGGTTGCGACAACACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGCCTAAGATCGGATGGACCGAGGGTTGCGGTAGCACATGCTGGGC
* **
19895068 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATTACCGGAGAA
66 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * *
19895133 CCTGACCGCCCGCATTGGGGTTCCGATGATCAGGGGGGCCGGGGGGTGTGCGGACATGATGTGCG
131 CCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
19895198 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAAAACCCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
19895263 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCT-CCAGTAGCCGTTAAAGTGTCTGAAATG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-CTGCCAGTAGCCGTTAAAGTGTCTGAAATG
19895327 GGGACACTTT
325 GGGACACTTT
19895337 GTAGACACCC
Statistics
Matches: 2648, Mismatches: 340, Indels: 76
0.86 0.11 0.02
Matches are distributed among these distances:
877 267 0.10
878 3 0.00
880 1 0.00
881 1 0.00
882 2 0.00
887 1 0.00
888 1 0.00
890 1 0.00
891 1 0.00
894 2 0.00
896 60 0.02
897 517 0.20
898 278 0.10
899 46 0.02
900 68 0.03
901 117 0.04
902 339 0.13
903 331 0.12
904 405 0.15
905 205 0.08
906 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGCCTAAGATCGGATGGACCGAGGGTTGCGGTAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAAT
TTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGACAG
CATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTGAGCACCC
GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19894135 original size:26 final size:26
Alignment explanation
Indices: 19894099--19894151 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19894089 GTTGACTTAG
*
19894099 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19894125 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19894151 G
1 G
19894152 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:19895456 original size:17 final size:17
Alignment explanation
Indices: 19895414--19895456 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
19895404 ATTTTTTACC
**
19895414 TTGTATTTTTTTTTCTT
1 TTGTATTTTTCCTTCTT
* *
19895431 TTTTCTTTTTCCTTCTT
1 TTGTATTTTTCCTTCTT
19895448 TTGTATTTT
1 TTGTATTTT
19895457 ATGTATTTTA
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.05, C:0.12, G:0.05, T:0.79
Consensus pattern (17 bp):
TTGTATTTTTCCTTCTT
Found at i:19895556 original size:21 final size:17
Alignment explanation
Indices: 19895522--19895589 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 17
19895512 TTTCTGTTAA
*
19895522 TATTTATAT-GTAT-TT
1 TATTTATATATTATATT
19895537 TATTTATATAGTTCTATATT
1 TATTTATATA--T-TATATT
19895557 TA-TTATATATTATAATT
1 TATTTATATATTAT-ATT
19895574 TATTTAT-TATT-TATT
1 TATTTATATATTATATT
19895589 T
1 T
19895590 TTTTTCTTGT
Statistics
Matches: 45, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
15 13 0.29
16 4 0.09
17 10 0.22
18 4 0.09
19 10 0.22
20 4 0.09
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (17 bp):
TATTTATATATTATATT
Found at i:19895574 original size:17 final size:19
Alignment explanation
Indices: 19895535--19895577 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 19
19895525 TTATATGTAT
*
19895535 TTTATTTATATAGTTCTATA
1 TTTA-TTATATAGTTATATA
19895555 TTTATTATATA-TTATA-A
1 TTTATTATATAGTTATATA
19895572 TTTATT
1 TTTATT
19895578 TATTATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 7 0.32
18 4 0.18
19 7 0.32
20 4 0.18
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTATTATATAGTTATATA
Found at i:19895724 original size:19 final size:19
Alignment explanation
Indices: 19895693--19895749 Score: 66
Period size: 18 Copynumber: 3.1 Consensus size: 19
19895683 ATATCTGATA
19895693 TTAT-TATTATTTTTTTAT
1 TTATCTATTATTTTTTTAT
* *
19895711 TTATCCTA-TA-TTTTCTAA
1 TTAT-CTATTATTTTTTTAT
19895729 TTATCTATTATTTTTTTAT
1 TTATCTATTATTTTTTTAT
19895748 TT
1 TT
19895750 GATTTTGGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
17 3 0.10
18 16 0.52
19 10 0.32
20 2 0.06
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (19 bp):
TTATCTATTATTTTTTTAT
Found at i:19896253 original size:20 final size:20
Alignment explanation
Indices: 19896215--19896253 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
19896205 TTTCGACGAA
* *
19896215 AAAACCCAGATTCCGGTGAC
1 AAAACCCAGAATCCAGTGAC
19896235 AAAACCCAGAATCCAGTGA
1 AAAACCCAGAATCCAGTGA
19896254 ATCTTCAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.28, G:0.18, T:0.13
Consensus pattern (20 bp):
AAAACCCAGAATCCAGTGAC
Found at i:19896704 original size:17 final size:17
Alignment explanation
Indices: 19896682--19896739 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
19896672 TTTAATATTC
19896682 TTTTTATCTTTATTTTA
1 TTTTTATCTTTATTTTA
* *
19896699 TTTTTATTTTTGTTTTA
1 TTTTTATCTTTATTTTA
*
19896716 -CTTT-TCTTTATTTTTTA
1 TTTTTATCTTTA--TTTTA
19896733 TTTTTAT
1 TTTTTAT
19896740 TTATTTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
15 4 0.13
16 3 0.10
17 20 0.65
18 3 0.10
19 1 0.03
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTTATCTTTATTTTA
Found at i:19896730 original size:28 final size:25
Alignment explanation
Indices: 19896694--19896762 Score: 52
Period size: 26 Copynumber: 2.6 Consensus size: 25
19896684 TTTATCTTTA
*
19896694 TTTTA-TTTTTATTTTTGTTTTACTTT
1 TTTTATTTTTTATTTTT-ATTTA-TTT
*
19896720 TCTT-TATTTTTTATTTTTATTTATTT
1 TTTTAT-TTT-TTATTTTTATTTATTT
*
19896746 TTTTATTATTCTATTTT
1 TTTTATT-TTTTATTTT
19896763 CTTTAAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
26 16 0.47
27 10 0.29
28 8 0.24
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.80
Consensus pattern (25 bp):
TTTTATTTTTTATTTTTATTTATTT
Found at i:19896742 original size:17 final size:17
Alignment explanation
Indices: 19896694--19896748 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
19896684 TTTATCTTTA
19896694 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
19896710 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
19896728 TTTTATTTTTATTTATT
1 TTTTATTTTTATTTATT
19896745 TTTT
1 TTTT
19896749 TATTATTCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 31 0.94
18 2 0.06
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.82
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:19896980 original size:59 final size:59
Alignment explanation
Indices: 19896864--19897288 Score: 558
Period size: 59 Copynumber: 7.1 Consensus size: 59
19896854 TTTTGGTGAA
* * *
19896864 AATTTTCCTTAAAAATAAATTTTC--AAAAAATACTTTTGGGGAAAAGTTGAAAGTATC
1 AATTTTCCTTAAAAATAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATC
19896921 AATTTTCCTTAAAAATAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATC
1 AATTTTCCTTAAAAATAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATC
* *
19896980 AATTTTCCTTAAAAATAAGTTT-CAAAAAAAGGTATTTTT-GAGGAAAAGTTGAAAGTATC
1 AATTTTCCTTAAAAATAAATTTCCAAAAAAA-ATATTTTTAG-GGAAAAGTTGAAAGTATC
* *
19897039 AATTTCCCTTAGAAATAAATTTCC-AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATC
1 AATTTTCCTTAAAAATAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATC
* * *
19897097 AATTTTCCTTGAAAATCAAAGTTTCCAAAAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATC
1 AATTTTCCTTAAAAAT-AAA-TTTCC----AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATC
* * *
19897162 AATTTTCATTAGAAATAAATTTCC-AGAAAAATATTTTTAGGG-AAAGTTGAAAGTATC
1 AATTTTCCTTAAAAATAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATC
* * *
19897219 AATTTTCCTTGAAAATCAAAGTTTCCAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATC
1 AATTTTCCTTAAAAAT-AAA-TTTCC-AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATC
19897281 AATTTTCC
1 AATTTTCC
19897289 CTACACAAGA
Statistics
Matches: 324, Mismatches: 26, Indels: 31
0.85 0.07 0.08
Matches are distributed among these distances:
57 51 0.16
58 65 0.20
59 111 0.34
60 6 0.02
61 15 0.05
62 23 0.07
63 5 0.02
64 3 0.01
65 45 0.14
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.33
Consensus pattern (59 bp):
AATTTTCCTTAAAAATAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATC
Found at i:19901157 original size:20 final size:19
Alignment explanation
Indices: 19901128--19901165 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
19901118 TAGATGAAAA
19901128 ATGAGAAAAAAAAAAGAAG
1 ATGAGAAAAAAAAAAGAAG
19901147 ATGATGAAAAAAAAAAGAA
1 ATGA-GAAAAAAAAAAGAA
19901166 AAAAAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (19 bp):
ATGAGAAAAAAAAAAGAAG
Found at i:19901168 original size:11 final size:11
Alignment explanation
Indices: 19901152--19901190 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
19901142 AGAAGATGAT
19901152 GAAAAAAAAAA
1 GAAAAAAAAAA
19901163 G-AAAAAAAAA
1 GAAAAAAAAAA
* *
19901173 GAAGAAAAAAT
1 GAAAAAAAAAA
19901184 GAAAAAA
1 GAAAAAA
19901191 TGAAAAAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:19901198 original size:10 final size:10
Alignment explanation
Indices: 19901154--19901190 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
19901144 AAGATGATGA
19901154 AAAAAAAAAG
1 AAAAAAAAAG
19901164 AAAAAAAAAG
1 AAAAAAAAAG
*
19901174 AAGAAAAAATG
1 AA-AAAAAAAG
19901185 AAAAAA
1 AAAAAA
19901191 TGAAAAAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:19902491 original size:42 final size:41
Alignment explanation
Indices: 19902415--19902921 Score: 795
Period size: 42 Copynumber: 12.1 Consensus size: 41
19902405 ATGATTGTCA
19902415 AGGAGCAATTTACTTTCCAAAGTTTCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAG--TCGTGGTGCCTCTGTTTAG
*
19902456 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTCAG
1 AGGAGCAATTTACTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
** *
19902498 AGGAGCAATTTACTTTTCCAAAGTTTTGTTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAG
19902540 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
19902582 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGG
1 AGGAGCAATTTACTTTC-CAAAGTCGTGGTGCCTCTGTTT--A-G
19902627 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAG
19902669 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
19902711 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
19902752 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
19902793 AGGAGCAATTTAATTTCC-AAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
19902833 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
* * *
19902875 AGGAGCAATTTATTTTCCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
19902916 AGGAGC
1 AGGAGC
19902922 TTTGGTCAAA
Statistics
Matches: 441, Mismatches: 14, Indels: 22
0.92 0.03 0.05
Matches are distributed among these distances:
40 43 0.10
41 134 0.30
42 218 0.49
43 5 0.01
44 1 0.00
45 36 0.08
46 4 0.01
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:19902944 original size:10 final size:10
Alignment explanation
Indices: 19902929--19902972 Score: 65
Period size: 10 Copynumber: 4.5 Consensus size: 10
19902919 AGCTTTGGTC
19902929 AAAAACAAAA
1 AAAAACAAAA
19902939 AAAAAC--AA
1 AAAAACAAAA
19902947 AAAAACAAAA
1 AAAAACAAAA
19902957 AAAAACAAAA
1 AAAAACAAAA
19902967 CAAAAA
1 -AAAAA
19902973 ATGACAATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 8 0.26
10 18 0.58
11 5 0.16
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAACAAAA
Found at i:19902952 original size:18 final size:18
Alignment explanation
Indices: 19902929--19902966 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
19902919 AGCTTTGGTC
19902929 AAAAACAAAAAAAAACAA
1 AAAAACAAAAAAAAACAA
19902947 AAAAACAAAAAAAAACAA
1 AAAAACAAAAAAAAACAA
19902965 AA
1 AA
19902967 CAAAAAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAACAAAAAAAAACAA
Found at i:19902961 original size:23 final size:24
Alignment explanation
Indices: 19902928--19902973 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
19902918 GAGCTTTGGT
19902928 CAAAAACAAAAAAAAACAAAAAAA
1 CAAAAACAAAAAAAAACAAAAAAA
*
19902952 CAAAAA-AAAACAAAACAAAAAA
1 CAAAAACAAAAAAAAACAAAAAA
19902974 TGACAATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (24 bp):
CAAAAACAAAAAAAAACAAAAAAA
Found at i:19902979 original size:15 final size:15
Alignment explanation
Indices: 19902929--19902973 Score: 67
Period size: 14 Copynumber: 3.1 Consensus size: 15
19902919 AGCTTTGGTC
19902929 AAAAACAAAA-AAAA
1 AAAAACAAAACAAAA
*
19902943 ACAAA-AAAACAAAA
1 AAAAACAAAACAAAA
19902957 AAAAACAAAACAAAA
1 AAAAACAAAACAAAA
19902972 AA
1 AA
19902974 TGACAATGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
13 4 0.15
14 12 0.44
15 11 0.41
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAACAAAACAAAA
Found at i:19903193 original size:16 final size:16
Alignment explanation
Indices: 19903174--19903206 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
19903164 TCTTTTGTAT
19903174 TTTATGTATT-TTATTA
1 TTTAT-TATTATTATTA
19903190 TTTATTATTATTATTA
1 TTTATTATTATTATTA
19903206 T
1 T
19903207 GTATATCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:19903279 original size:14 final size:16
Alignment explanation
Indices: 19903229--19903279 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
19903219 TTTTTTTTCT
19903229 GTTA-ATATTTATAT-
1 GTTATATATTTATATA
* *
19903243 GTAATTTATTTATATA
1 GTTATATATTTATATA
19903259 GTTATATATTTAT-TA
1 GTTATATATTTATATA
19903274 -TTATAT
1 GTTATAT
19903280 TATAATTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 9 0.29
15 11 0.35
16 11 0.35
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (16 bp):
GTTATATATTTATATA
Found at i:19903383 original size:17 final size:18
Alignment explanation
Indices: 19903361--19903395 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
19903351 TATTTTATTC
*
19903361 ATTTATCTGATT-TTTTT
1 ATTTATCCGATTATTTTT
19903378 ATTTATCCGATTATTTTT
1 ATTTATCCGATTATTTTT
19903396 TTTTTCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.20, C:0.09, G:0.06, T:0.66
Consensus pattern (18 bp):
ATTTATCCGATTATTTTT
Found at i:19904260 original size:4 final size:4
Alignment explanation
Indices: 19904253--19904322 Score: 61
Period size: 4 Copynumber: 16.8 Consensus size: 4
19904243 TTTCAGAAAT
* * *
19904253 TTTA TTTA TTTGT TTTA TTTA TTTA TTTA TTTA TTAGA TTAGA TTTA TTTA
1 TTTA TTTA TTT-A TTTA TTTA TTTA TTTA TTTA TT-TA TT-TA TTTA TTTA
*
19904304 -ATA TTTA TTTA TCTTA TTT
1 TTTA TTTA TTTA T-TTA TTT
19904323 TTATTTTTGT
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
3 2 0.04
4 39 0.70
5 15 0.27
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:19904268 original size:13 final size:12
Alignment explanation
Indices: 19904252--19904367 Score: 58
Period size: 13 Copynumber: 9.1 Consensus size: 12
19904242 TTTTCAGAAA
19904252 TTTTATTTATTT
1 TTTTATTTATTT
19904264 GTTTTATTTATTT
1 -TTTTATTTATTT
* *
19904277 ATTTATTTATTAGA
1 TTTTATTTATT--T
**
19904291 TTAGATTTATTT
1 TTTTATTTATTT
*
19904303 AATATTTATTTATCT
1 --T-TTTATTTATTT
*
19904318 TATT-TTTATTT
1 TTTTATTTATTT
*
19904329 TTGT-TTTACTTT
1 TTTTATTTA-TTT
19904341 TCTTTATTT-TTT
1 T-TTTATTTATTT
19904353 ATCTTTATTTATTT
1 -T-TTTATTTATTT
19904367 T
1 T
19904368 CACTTTTATT
Statistics
Matches: 79, Mismatches: 14, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
11 12 0.15
12 19 0.24
13 25 0.32
14 15 0.19
15 8 0.10
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.72
Consensus pattern (12 bp):
TTTTATTTATTT
Found at i:19904285 original size:29 final size:28
Alignment explanation
Indices: 19904253--19904322 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
19904243 TTTCAGAAAT
* *
19904253 TTTATTTATTTGTTTTATTTATTTATTTA
1 TTTATTTATTTGATTTATTTA-ATATTTA
* *
19904282 TTTATTAGATTAGATTTATTTAATATTTA
1 TTTATT-TATTTGATTTATTTAATATTTA
19904311 TTTATCTTATTT
1 TTTAT-TTATTT
19904323 TTATTTTTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
29 20 0.61
30 13 0.39
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.69
Consensus pattern (28 bp):
TTTATTTATTTGATTTATTTAATATTTA
Found at i:19904352 original size:17 final size:17
Alignment explanation
Indices: 19904305--19904367 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
19904295 ATTTATTTAA
*
19904305 TATTTATTTATCTTATTTT
1 TATTTATTT-T-TTATCTT
19904324 TATTT-TTGTTTTA-CTTT
1 TATTTATT-TTTTATC-TT
*
19904341 TCTTTATTTTTTATCTT
1 TATTTATTTTTTATCTT
19904358 TATTTATTTT
1 TATTTATTTT
19904368 CACTTTTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
17 25 0.68
18 6 0.16
19 6 0.16
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (17 bp):
TATTTATTTTTTATCTT
Found at i:19904375 original size:39 final size:39
Alignment explanation
Indices: 19904305--19904389 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 39
19904295 ATTTATTTAA
* ** *
19904305 TATTTATTTATCTTATTTTTATTTTTGTTTTACTTTTCTT-
1 TATTT-TTTATCTTATATTTATTTTACTTTTA-TTTTATTC
19904345 TATTTTTTATCTT-TATTTATTTTCACTTTTATTTTATTC
1 TATTTTTTATCTTATATTTATTTT-ACTTTTATTTTATTC
19904384 TATTTT
1 TATTTT
19904390 CTTTAAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
38 15 0.38
39 19 0.49
40 5 0.13
ACGTcount: A:0.16, C:0.08, G:0.01, T:0.74
Consensus pattern (39 bp):
TATTTTTTATCTTATATTTATTTTACTTTTATTTTATTC
Found at i:19904387 original size:22 final size:22
Alignment explanation
Indices: 19904349--19904390 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
19904339 TTTCTTTATT
19904349 TTTTATCTTTATTTATTTTCAC
1 TTTTATCTTTATTTATTTTCAC
19904371 TTTTAT-TTTATTCTATTTTC
1 TTTTATCTTTATT-TATTTTC
19904391 TTTAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTATCTTTATTTATTTTCAC
Found at i:19904487 original size:59 final size:59
Alignment explanation
Indices: 19904397--19904575 Score: 288
Period size: 59 Copynumber: 3.0 Consensus size: 59
19904387 TTTCTTTAAA
*
19904397 TAAAAATCAAATTTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAATTTT-CAAAAAAAAGATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
19904458 TAAAAATAAATTTTCAAAAAATAGATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAAGATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
*
19904517 TAAAAATAAATTTTCAAAAAAAAGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAAGATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
19904576 ACACAAGAAC
Statistics
Matches: 111, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
58 1 0.01
59 96 0.86
60 7 0.06
61 7 0.06
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.35
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAAAGATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:19904817 original size:27 final size:27
Alignment explanation
Indices: 19904776--19904835 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
19904766 TTACTTGGTA
19904776 AAATTT-TAAGGCTAATTGGATAACAC
1 AAATTTATAAGGCTAATTGGATAACAC
19904802 AAATTTATAAGGCTAATTGGATAACAC
1 AAATTTATAAGGCTAATTGGATAACAC
19904829 AAATTTA
1 AAATTTA
19904836 AGCTGGTACC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 6 0.18
27 27 0.82
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (27 bp):
AAATTTATAAGGCTAATTGGATAACAC
Done.