Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 114 of 195
Found at i:19905649 original size:26 final size:25
Alignment explanation
Indices: 19905609--19905660 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
19905599 GTTGACTTAG
*
19905609 GCATACGAGTTCATTCTCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
19905634 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
19905660 G
1 G
19905661 ATCGGACTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:19906507 original size:26 final size:26
Alignment explanation
Indices: 19906477--19906526 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19906467 GACTTAGGCC
19906477 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
* *
19906503 TACGGAGTTCGTTGCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19906527 ATTGGACTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:19908246 original size:26 final size:26
Alignment explanation
Indices: 19908210--19908262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19908200 GTTGACTTAG
*
19908210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19908236 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19908262 G
1 G
19908263 ATTGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19909133 original size:26 final size:26
Alignment explanation
Indices: 19909103--19909155 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19909093 GTTGACTTAG
*
19909103 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGAAGTTCATTCAC-AGTCTAA
19909129 GCATACGAAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
19909155 G
1 G
19909156 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:19910037 original size:26 final size:26
Alignment explanation
Indices: 19910007--19910059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19909997 GTTGACTTAG
19910007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
19910033 GCATACGGAGTTCATTGCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19910059 G
1 G
19910060 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19910408 original size:900 final size:892
Alignment explanation
Indices: 19907417--19921434 Score: 12872
Period size: 898 Copynumber: 15.7 Consensus size: 892
19907407 AGGGTTGCGA
* * * *
19907417 TGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCAT
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* *
19907482 TGGGGTTCCAACGATCGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
66 TGGGGTT-CGACGATCGGGGG-GCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
19907547 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
129 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
19907612 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
194 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
19907677 TGCTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAAGTA
259 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATA
** *
19907742 CAAGGATCACGTCTACCAAGTTTGGGGTGAAAAC-CCTTTCGAAAAAATTTTAAAAAATCCTGAA
324 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAA
* * *
19907806 CCTTAAATAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
389 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * *
19907871 AAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGAATTGCCACGCAGAAATATG
454 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* *
19907936 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTC
519 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
19908001 GGCGTAGTGCCCGCCTGCCCGCCCACCCGCTC-TTTTGTCGGTTGGCTTAGGCGTACGAAGTTCA
584 GGCGTAGTG-CC-CC-GCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * ** ** *
19908065 TTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACGATAGCAGGATCGATAGCACACAGAGGGGG
642 TTCCCAGTCTAAGAT-GGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* ** * * *
19908130 ACCCAACCAATCCCTGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAACGCCTGCACGCTCGTTT
706 ACCCAGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
19908195 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTGCCAGTCT
771 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
19908260 AAGATTGGATC-GATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATTTGCTGG
836 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
19908316 TGCC-CATTTTTCCTT-G-CTGGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGACCGGCGGC
1 TGCCGCATTTTT-CTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGC
** * * *
19908378 ATTGGGGTTTCGGTGATCAGGGGGCGGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGCA
64 ATTGGGG-TTCGACGATC-GGGGG-GCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
19908443 CATGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
126 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* *
19908508 ATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTC
191 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
19908573 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTGCATGCCAACAAAA
256 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
* * *
19908638 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCTG-AAAAATTTTAAAAAATCT
321 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCC
* * **
19908702 TGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
385 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *** *
19908767 CGTGAAGGCTTAAAGGACCATTGTATGTATTTGCAAGCCATAAAAATCATATTGGCATGCAGAAA
450 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * *
19908832 TATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCAAAGGCTTGCGCATCCCGTCTCTCT
515 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * * *
19908897 GGCCGATGTAGTG-CCTGCCCGCCCGTTCGTTTCGTCGGCTGGCTTAGGCATACAGAGTTCATTC
580 GGCCGGCGTAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** * *
19908961 CCAATCTAAGATCGGGCC-GAACTGATGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGAC
645 CCAGTCTAAGAT-GGACCAG-ACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * * *
19909025 CCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTGAGCGCCCGTACGCTCGTTTCA
708 CCAGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
19909090 TGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCACAGTCTAA
773 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
19909155 GATCGGATCAGACCAAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGG
838 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* ** * *
19909210 TGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* ** *
19909275 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGAGTGCATGATGTGGGATGGGTGCTGGTAC
66 TGGGGTT-CGACGATC-GGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
19909340 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCA
127 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* *
19909405 TTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
192 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
19909470 AATGGTCACAAAATCTTGTATACTTTGTGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAG
257 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAA
* *
19909535 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC-CCTTTCGAAAAAATTTTAAAAAATCCCC
322 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
* *
19909599 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
387 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * * *
19909664 TGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAAAGGAAATTGACACGTAGAAAT
452 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-CATTGGCACGCAGAAAT
* * *
19909729 ATGTAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTT
516 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
19909794 GTCGACGTAGTGCCCTCCGGCCCGCCCACCTGCTCGTTTTGTCGGTTGGCTTAGGCGTACGGAGT
581 GCCGGCGTAGTG-CC-CC-GCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * * **
19909859 TCATTCCTAGTCTAAGACTAGACCAGACTGAGGGTTACGATAGCAAGATCAGCAGCACATAGAGG
639 TCATTCCCAGTCTAAGA-TGGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * * *
19909924 GGGACTCGGCTAATCCCTAGCTTGCGTATCCCGCCCTTCTGGCCGGCTGAGCGCCTGCACGCTCG
703 GGGACCCAGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *
19909989 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCGG
768 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
19910054 TCTAAGATTGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
833 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
19910114 TGCC-CATTTTTCTTTGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * * *
19910178 TGGGGCTTCGACGATCGGGGGGTGGGGGGTGTGTGCACATGATGTGCGATGGTTGCTGGCACTTG
66 TGGGG-TTCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
19910243 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTT
130 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
*
19910308 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAATGGGGACACTTTTTTCAAAT
195 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
19910373 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATAC
260 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
*
19910438 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTG-AAAAATTTTAAAAAATCTCGAA
325 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAA
* ** *
19910501 CCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
389 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * ** * *
19910566 AAGGCTTAAGGGACGATTGTATGAATTTGCAAGCCATAAAAATCACAATGGCACGTAGAAATATG
454 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * * * *
19910631 AAGATGTGCCTAAACCTACTTACCACCCTATCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCC
519 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * *
19910696 GGC-TA-AG---CGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
584 GGCGTAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * * ** *
19910756 TCTAAGATCGGA-CTGAACCGAGGGTTGCGGTAGCACAGGCTGGGC-TCTGGCA-AGTGCTGGGG
649 TCTAAGAT-GGACCAG-ACTGAGGGTTACGGCAG--CAGGATCGGCAGCACGCAGAG-G--GGGA
** ** * * * * *** * ** * * *
19910818 CCTCATTTTTCTTCCCCGG--GGCACCATCGTCG-GAGTATTACCGG-AGAACCTGACCG-ACAG
707 CC-CA--GCTGATCCCTGGCTTGC-GCATC-CCGCCCCTCTGGCCGGCTG-AGC-GCCCGCAC-G
* * * * * * * *** *** *
19910878 --C-ATT-G-GGATT--CTGACG-AT-CGGGGGCCGGTGATT-GGGGTAGCAGGAT-CGGTAG--
764 CTCGTTTCGTGGGTTGACTTAGGCATAC---GG-AGTTCATTCCCAGTCTAAGCATACGG-AGTT
* ***** * ** * * * * ** * *
19910930 CA-T-GCAGAGGGGGACCCAACC-GATCCCCA-GCTTGC-GCATC-C-CGC--CCCCCTGGC-TG
824 CATTCCCAGTCTAAGATCGGACCGGA--CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
19910985 -GCTGAG
887 TGCTG-G
** *** * * * * * *
19910991 CACCCGCA-CGCTCATTTCGTTGGTTGGCTTAGACAT--ACAGAGTTCATTCCCAGTC-TA-AGC
1 -TGCCGCATTTTTC--TTCGTCGG--GGC--A-CCATCGTCGGAG--CA-T--C-GTCGGAGAAC
* * * *** * * ** ** * *
19911051 AT-ACGGA-GTTCATTCCCAG-TCTAAGATCGGACCGGACCAAGGGTTGTCGGCAGCACATGCTG
52 CTGACCGACG-GCATT-GGGGTTCGACGATCGG---GGGGCGGGGGGTGT--GC-GCACATGATG
* * * * * * * * ** * *
19911113 -G-GCTCGG-GCAT-GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC-ATCGCCGGAGC-ATC
109 TGCGATGGGTGC-TGGTACTTG-GCC-C--TTAT-AT--T--GGCCCCCTATC-CCTCATCAAAC
* * * ** * ** ** * * *
19911172 GTCGGAGAACCTGACCGACGGCATT---G-GGGTTTCGATGATCGGGGGGTCCGGGGGGTGTGC-
163 CTC-AAGAA-CTCA-C-ACCCCCTTAAAGAGCATTT-GA-GAT-----TTTAC---AGGTTTGCT
* * **** * * ** * **
19911232 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
214 GC-CA-G-T-AGCCATTAAAG-T-GT-C-T-G-----AAATGGGGACACT-T---TTTTCAAA--
* * * * ** *
19911297 TCGAGAACTCACACCCCTTTAAAGAGCATT-TGAGATTTTACAAGTTTGCAGCCAGTAGCCATTA
259 T-G-G---T--CA---C---AAA-ATC-TTGT-ACA-CTT-CGAGTTTTTAG-C--T-G-AATT-
** * * * *** * ** ** ** * *
19911361 AAGTGTCTGAAATGGGGACATTTTTTTCAAATGGACACAAAATCTTGTAC-ACTTTGAGTTTTGA
300 -TTTTTATG-CATGCCAACA-------AAAAT--ACA-AGGATCACGT-CTAC--CAAGTTTGGG
** ** ** ** ** * * *
19911425 GCTGAATTTTTTTGTGCATGCCAATCAAAA--ACACAAGGATCACGTCTACCAAGTTTGGGGCCA
350 GCCAAAACTCCTT-T-C--G--AA--AAAATTTTA-AAAAATCCCG--AACC--G--T-----AA
* ** * * ** * * **
19911488 AAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTCAAAAATCATGAAAAA
395 AAAGT--TT-C--AAAAATCATGAAAAA---T--A--G-AAAACG-AGTC----GTCTTG--CCA
* * * * *
19911553 TAGAAACGAGTCGTCTTGCCATGAA-ACTTCACGTGAAGTCATAAGGGACCATTGTATGAATTTA
440 T-GAAAC---T--TC---ACGTGAAGGCTT-AAG-G--G----AC-----CATTGTATGAATTTA
* *
19911617 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
483 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
** * * * *
19911682 ATTTATCCACGGCTTGCGCATCCCGTCACTCTAGCCGGCGTAGTG-CCCACCCGCCCGCTCATTT
548 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCTCGTTT
* * * **
19911746 CGTCGGCTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTG
613 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-GGACCAGACTGAGGGTTACG
* * * *
19911811 GCAGCAGGATCGGCAGCA-GACAGAGAGGGACCC-GATCGAT-CCTCGGCTTACGCATCCCACCC
677 GCAGCAGGATCGGCAGCACG-CAGAGGGGGACCCAGCT-GATCCCT-GGCTTGCGCATCCCGCCC
*
19911873 CTCT-GCCAGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG----TT-
739 CTCTGGCC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
19911932 -CA---T-----T-C------CA-----AGTCTAAGATCGGACCAGACCGAGGGCTGCGGTAGCA
803 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
*
19911976 CATGCTGGGCTCAGGCATGTGCTGG
868 CATGCTGGGCTCGGGCATGTGCTGG
* * * * *
19912001 TGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAG-AAC--C---TATCC--A--G-CGGTAT
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * * * *
19912055 TGAGGTTCCAGTGATCGGGGGGGCCGGGGGGTGTGCGCATATGATGTGCAATGGGTGCTGGTACT
66 TGGGGTTCGA-CGATC-GGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
19912120 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCAT
128 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
19912185 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
193 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
19912250 ATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGCTGAATTTTTTTATGCATACCAAAAAAAAT
258 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAT
* * **
19912315 ACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAATCTTGA
323 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGA
*
19912379 ACCGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
388 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
19912444 GAAGCCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
453 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* *
19912509 GAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT-TGGC
518 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * **
19912573 CGGCGTAGTG-CCCGCCCGTCCGTCTGCTCGTTTCATCGGTTGGTTTAGGCATGTGGAGTTCATT
583 CGGCGTAGTGCCCCGCCCG-CC--C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * *
19912637 CCCAGTCTAAGATTGGATCAGACTGAGGGTTACGGTAGCAAGATTGGCAGCATGCAGGGGGGGAC
644 CCCAGTCTAAGA-TGGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * *
19912702 CCAGAC-GATCCCCGGCTTGTGCA-CCTCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTAT
708 CCAG-CTGATCCCTGGCTTGCGCATCC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
19912765 CATGGGTTGACTTAGGCATACGGAGTTCATTCCGAGTCTAAGCATACGGAGTTCATTCCCAGTCT
771 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * ** * *
19912830 AAGATCAGACCGGACCAAGGGTTGCGATAGCAGATGCTGGGCTCGGGCATGTGCTGT
836 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * ** * *
19912887 TGTCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACTTGACCGACAGCAT
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * * * * *
19912952 TGGGGTTCCAGCGGTCGGGGGGGCCGGGGGGTGTGCACAAATGATGTGCGAAGGGTGCTGGTGCT
66 TGGGGTTCGA-CGATC-GGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
** * *
19913017 TGGCCCTTATATTGGCCCCCTATCCCTCA-CAAAACCTTGAGAACTCACACTCCCTTAAAGAACA
128 TGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* * * *
19913081 CTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAGGTGTCTGAAATGGAGACACTTTTTTCA
192 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
19913146 AACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
257 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAA
* * **
19913211 TACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-TTCTGAAAAAATTTTTCAAAATCCC
322 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCC
* ** **
19913275 AAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC-TCGAAACTTCA
386 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-GAAACTTCA
* *
19913339 CGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
450 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * *
19913404 TATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTCGTCTCTCT
515 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * ***
19913469 GGCCGGCGTAGTGCCCGTCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCACGTGGAGTTCA
580 GGCCGGCGTAGTG-CC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
19913534 TTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTACGGCAGCAAGATTGGCAGGATGCAG-GGGG
642 TTCCCAGTCTAAGAT-GGACCAGACT-GAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * * * *
19913597 GACCCAGATGATCCCCGGCTTGTGCACCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTA
705 GACCCAGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
19913662 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTC
770 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
19913727 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGATTCT-GGCTCGGGCAAGTGCTGT
835 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
19913784 TGTCGTATTTTTCTTCGTCAGGGCACCATCG-CTGGAGCATCGTCGAAGAACCTGACCGACGGCA
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGACGGCA
* * * *
19913848 TTGGGGTTCCGGCGATCGGGTGGCCGGGTGGGGTGTGCGCCCATGATGTACGATGGGTGCTGGTA
65 TTGGGGTT-CGACGATCGGG-GGGC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
** * **
19913913 CTTCACCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
126 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* * *
19913978 ATTTGAGATTTTACAAGTTTGCTTCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
191 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
19914043 AACTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
256 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
* * * *
19914108 ATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAACTCCC
321 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCC
** * * *
19914173 GAACCGTAAAAAGTTTTGAAATTCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
386 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
19914238 GTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCACGTAGAAAT
451 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
*
19914302 ATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
516 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
19914367 GCCGGCGTAGTGCCCGCCCGCCTGCCCGCTTGTTTCATCGATTGGCTTAGGCATGCGGAGTTCAT
581 GCCGGCGTAGTG--C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * ** * ** *
19914432 TCCTAATCTAAGATTGGATCGGA-TCAAGGGTTGTGGCACCAGGATCGATAGCATGCAGAGGGGG
643 TCCCAGTCTAAGA-TGGACCAGACT-GAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * *** ** *
19914496 ACCCAACAGAT-CCTCGGCTTGCGCATCCTTTCCCTCTGGCCGATTGACCGCCCGCACGCTCGTT
706 ACCCAGCTGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
** * * *
19914560 TTATGGGTTGACTTAGGCATATGGAGTTCCTTCCCATTCTAAGCATACGGAGTTCATTCCCAGTC
770 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * *
19914625 TAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGG
835 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
19914683 TGCCGTATTTTTCTTCGTTGGGG---CA----C----CATCGTCGGAGAACCTGATCGACGGTAT
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * * **
19914737 TAGGGTTCCGGCGATCAGGCAGGTG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTACTAC
66 TGGGGTT-CGACGATC-GG--GGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * * * *
19914801 TTGGCCCTGATAGTAGCCCCCTATCCCTAATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCA
127 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* *
19914866 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCA
192 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
19914931 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAATAAAAA
257 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAA
* * * * *
19914996 TACAAGGATCACGTCTACCAATTTTGGGGCCAAATCTCCTTTCAAAAAAATTTTTAAAAATCCTG
322 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
* *
19915061 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAATCCCGAGTCGTCTTGCGATGAAACTTCA
387 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA--ACGAGTCGTCTTGCCATGAAACTTCA
*
19915126 CGTGAAGGCTTAAGGGACCATTGTATGAA-TTACAAGCCATAAAAATGGCATTGGCACACAG-AA
450 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
*
19915189 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCT
515 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
19915254 GGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
580 GGCCGGCGTAGTG--C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * *
19915319 TTCCCAGTCTAAGATCGAACCAGACCGAGGGTTATGGCAGCAAGATCGACAGCATGTAGAGTGGG
642 TTCCCAGTCTAAGAT-GGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * * * *
19915384 ACTC-GGTCGATCCC-CGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTATGGTCATT
706 ACCCAGCT-GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
19915447 TTGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGTC
770 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* *
19915512 TAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGG
835 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
** * ** *
19915570 CACCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACTTGACCTG-CAGG-
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GAC-GGC
*
19915633 ATTGGGGTTCTGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGCGCGATGGGTGCTGGT
64 ATTGGGGTTC-GACGATC-GGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
19915698 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
125 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
* * *
19915763 CATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCGTTAAAGTTTCTGAAATGGGGACACTTTTTT
190 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
19915828 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTGTTTTGTGCATGCCAAAAAA
255 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAA
* *
19915893 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAATCC
320 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCC
* * *
19915958 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAATCCCGAGTCGTCTTGCGATGAAACTT
385 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA--ACGAGTCGTCTTGCCATGAAACTT
*
19916023 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
448 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * *
19916088 AATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTGT
513 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
19916153 CTGGCTGACGTAGTGCCCACCCGCTCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTT
578 CTGGCCGGCGTAGTG--C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * ** * * * *
19916218 CATTCCCAGTCTAAGATTGAACTGAACCAAGGGTTATGGCAGCAAGATCGGCAGCATGCAGAGTG
640 CATTCCCAGTCTAAGATGGACCAG-ACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * *
19916283 GGACCCGGCCGATCCCCGACTTGCGTATCCCGCCCCTCTGGCCGGTTGTGCGCCCGCACGCTCGT
704 GGACCCAGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
19916348 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------AG-
769 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * **
19916394 C----A---GACCAGACTGAGGGTTGCGGTAGCACATACTGGGCTCAAGCATGTGCTGG
834 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
** * ** * * * *
19916446 CACCACATTTTTCTTCACCGGGGGACCATCGTCGGAGCATCGCCGGAGAACTTAACCGACGG-AT
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
*
19916510 TGGGGTTTCGGCGATCGGGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
66 TGGGG-TTCGACGATC-GGGGGG-CGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
19916575 TTGGCCATTATATTGGCCCCCTCTCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
127 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* * * * *
19916640 TTTGAGATTTTACAGGTTTGCCGCCAGTAGCCGTTAAAGTGTCTTAAATGGGGATATTTTTTTCA
192 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * ** *
19916705 AATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACACCAACAAAAG
257 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAA
*
19916770 TACAAGGATCACGTCTACCAAGTTT-GGGCCAAAA-TGCCTTCCGAAAAAATTTTAAAAAATCCC
322 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTTCGAAAAAATTTTAAAAAATCCC
* * * *
19916833 AAACCGTAAAAAGTTTCAAAAATCATGACAAATAGAAAACGAGTCGTCTTGACATCAAACTTCAC
386 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
**
19916898 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
451 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * *
19916963 ATGAAGATCTGCATAAACCCACCTACCA-CCTA-CGATCCACGGCTTGCGCATCCCGTCTCTTTG
516 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
*
19917026 GCCGGCGTAGTGCCCGCCTGCCCGCCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
581 GCCGGCGTAGTG-CC-CC-GCCCG--CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * * * *
19917091 ATTCCTAGTCTAAGATCAGA-CTGAACCGAGGGTTTCAGCAGCAGGATTCGGTAACACTCAGAGA
641 ATTCCCAGTCTAAGAT-GGACCAG-ACTGAGGGTTACGGCAGCAGGA-TCGGCAGCACGCAGAGG
* * * * * * *
19917155 GGGACCC-GATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGTGCCCGCATGCTT
703 GGGACCCAGCT-GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
19917219 GTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCGAGTCTAAGCATACGGAGTTCATTCCCA
767 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
19917284 GTCCAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTTGA
832 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC-TGG
* *
19917346 TGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGACAT
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
** * *
19917411 TGGGGTTCCGGTGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCGGGTACT
66 TGGGGTT-CGACGATC-GGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
19917476 TGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCAAGAACTCACACCCCCTTAATGAGCAT
128 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
* *
19917541 TTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
193 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
19917606 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAA
258 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC-AACAAAAA
* * *
19917671 TACAAGGATCACGTC-ACCAAGTTTGGGGGCAAAACTCCTTTCTAAAAAATTTTAAAAAATCTCG
322 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
* *
19917735 AACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
387 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * * *
19917800 TGAAGGCATAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATG
452 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * *
19917865 TGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTCCGCATCCCATCTCTCTGG
517 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
19917930 CCGGCGTAGTG-CCCGTCCGCCCGCTCGTTTCGTCGGTTGGATTAGGCATATGGAGTTCATTCCC
582 CCGGCGTAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * * ** ** * * *
19917994 AGTCTAAGATCAAATCAAACCAAGGGTTGTGACAGCAGGATTGGCAGCACACAGAGGGGGACCCA
647 AGTCTAAGAT-GGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCA
* * * * * * ***
19918059 GCCGATCCTTTGTTTGCGAATCCCGCCCCTCTGGCCGGCTAAGCGAGTGCACGCTCGTTTCGTGG
711 GCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
** ** *
19918124 GTTGACTTAGGCATACGGAGTTCATTCATAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAAAT
776 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * *
19918189 AAGACCGAACCGAGGGTTGCAGCAGCACATGCTAGGCTTGGGCATGTGCTGG
841 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
19918241 TGCCGTATTTTTCTTCGTCGAGGCACCATCG-CTGGAGCATCCTCGGAGAACCTGACCGGCGGCA
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGACGGCA
* *
19918305 TTGGGGTTCCGACGATCGGGAGGGCCGAGGGGGGCTGTGCACACATGATGTGCAATGGGTGCCT-
65 TTGGGGTT-CGACGATCGGG-GGG-C--GGGGGG-TGTGCGCACATGATGTGCGATGGGTG-CTG
* * * * * * *
19918369 GTACTTGGCCCTTATATAGGCCCCGTATCCCTCATCAAACCTCGAGAACACACACCCCATCAAAA
123 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
*
19918434 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
188 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
19918499 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAA
253 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACA
* ** * * *
19918564 AAAATACAAGGGTCAAATCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAACAATTCTAAACAA
318 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA-AATTTTAAAAAA
* * *
19918628 TCCCGAACTGTAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACT
382 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
19918692 TCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTC-
447 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG-CA
*
19918755 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCT
511 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
19918820 CTCTGGCCGGTGTAGTGCCCGCCCATCTGCTTGCCCACTCGTTTTGTCGGTTGGCTTAGGCATAC
576 CTCTGGCCGGCGTAGTGCCC-CGC--C--C--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * * * * * *
19918885 GGAGTTCATTATCAATCTAAGATTGGACCGGACCGAGGGTTGCAGCAGTAGGATCGGTAGCACGC
634 GGAGTTCATTCCCAGTCTAAGA-TGGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGC
* *
19918950 AGAGGGGGACCC-GATTGAT-CCTCGGCTTGCGCATCCCGCTCCTCTGGCCGGCTGAGCGCCCGC
698 AGAGGGGGACCCAG-CTGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
** * * * * *
19919013 ACGCTCAATTCATGGGTTTACTTATGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAATTCA
761 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
19919078 TTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCT
826 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
19919143 GG
891 GG
** * * *
19919145 TGCCGCATTTTTCTTCACCGGGG-----T--TCCG-GCAATCG--GG-G-----GGCCTA-GG--
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC-ATCGTCGGAGAACCTGACCGACGGCA
* ** * ** * * ** **
19919191 -TGGGTGTGCGCAC-AT-GATGTGC-GATGGT-T--G--C-TG--GTAC--TTGGCCCTTATA-T
65 TTGGG-GTTCG-ACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
** * * * * * * *** * *
19919241 TGGCCC-CCTA-T--CCCTC-ATCAAACCT--TGAGAA-CTCACACCACCTTAAAGAGCATT--T
128 TGGCCCTTATATTGGCCCCCTATC---CCTCATCA-AACCTCA-A-GAACTCACACCCCCTTAAA
** * * * * *** * * ** * ****
19919296 GAGGTTTTACAGGTTTGCTGCCA-G-TAGCCATTAAAGT-GTC-TGAAA-TG-GGGACACTTTTT
187 GAGCATTT-GAGATTT--T-ACAGGTTTG-C-TGCCAGTAGCCATTAAAGTGTCTGA-AATGGGG
* * * ** * * * * *
19919355 TCAAATGGTCATAAAATCTTGT-AC---A-C-T-T-CGAC-T--A---TTCAGCTAAATGTTTTT
245 AC-ACT-TTTTTCAAA--TGGTCACAAAATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
19919406 GTGCATGCCAACATAGGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTGTGAAA
305 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAA
* ** *
19919470 AAATTTTAAAAAATCCCGAACCGCTAAAAAGTTTCCAAAATTGTAAAAAATAGAAAACGAGTCGT
369 AAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
19919535 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATG
433 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
19919600 GCGTTGGCACGCCA-AAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
498 GCATTGGCACG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
19919664 AGCGCATCTCGTCTCTCTGG-CGGCGTAATG-CCC-CCCGCCCGCTCGTTTCGTTGAG-TGGCTT
562 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCTCGTTTCGTCG-GTTGGCTT
* * * **** *
19919725 AGGCATACGGAGTTCATTTCCAGTCTAAGATTGGA--TGA--AAGGGTT-TTTTAGCAGGATCGA
626 AGGCATACGGAGTTCATTCCCAGTCTAAGA-TGGACCAGACTGAGGGTTACGGCAGCAGGATCGG
* * * *
19919785 CAGCACGCAGA-GGGGACCCAAC-GATCCC-CG-TT-TGCACCCCG-CCCTCTGGCC-GCTGAGC
690 CAGCACGCAGAGGGGGACCCAGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
19919843 GCCC-CACGCTCGTTTCGTGGGTTGAC-TAGGCAT-CGGAGTTCATT-CCAGTCTAAGCATA-AG
755 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
19919903 AATTCATTCCCA-TCTAAGA-CAGACC-G---GAGGGTTGC-GCAGCA-ATGCT-GGCTC-GGCA
820 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
19919958 --TGC-GG
885 TGTGCTGG
* * *
19919963 T---GCATTTTTCTTCGTCGGGACATCAT-G-C-GAGCATCG-CAGGAGAACCTGACCG-TGGCA
1 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCA
* * * * *
19920020 TTGGGGTCCG-GGATCGGGGGTC--GAGG-GTGCACACATGATGTGCGATGGGTGCTGGTACTTG
65 TTGGGGTTCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
19920081 GCCATTATAATTGG---CCT-TCCCTCATCAAACCCTCGAGAAC-CACACCCGCTTAAAGAGCAT
130 GCCCTTAT-ATTGGCCCCCTATCCCTCATCAAA-CCTCAAGAACTCACACCCCCTTAAAGAGCAT
*
19920141 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTTAAAGTGTCTGAAAGTGGGGAACACTTTTTT
193 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAA-TGGGG-ACACTTTTTT
* * *
19920206 CAAATGGTTCACAAAATCTTGTACACTTCGAGTTTTTA-CTAAATTTTTTTTTACATGCC-A-AA
255 CAAATGG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
** *
19920268 AAATACAAGGATGCACGTCTACCAAGCCTGGGGCCAAAACTCCTTTCAAAAAAATTTTTAAAAAA
319 AAATACAAGGAT-CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA-TTTTAAAAAA
* * ** * * ** * *
19920333 TCCCGAATCGCCAAAATTTTTGAAAATTGGTGGAAAAATAGAAAACAAAGTCATCTTGCCCATGA
382 TCCCGAACCG-TAAAAAGTTTCAAAAATCAT-GAAAAATAGAAAAC-GAGTCGTCTTG-CCATGA
*
19920398 AACTTCACGTG-AGGC-TAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCAC
443 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * *** ** *
19920461 ACAAAAATATGAAGATGTGCCTAAACCCACTTACCACCCTAT--AAAAATAGC--CCGC-T--CG
508 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
** * * * * * *
19920519 T-T-TC--G-TTG-GT--TG----GCTTCG---G--C--AT--ACAG--AG-TT---CATTC---
573 TCTCTCTGGCCGGCGTAGTGCCCCGC-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** * ** *
19920554 --CCAATCTAAGGTC----A--GACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGA
637 GTTCATTCCCA-GTCTAAGATGGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGA
** * *** * * *
19920611 GGGAAACCCAGCCGATCCCCAACTTACGCATCCCGCCCCTCTGGCCGGCTCAGTGCCCGCACGCT
701 GGGGGACCCAGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
19920676 CATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCTA-TCTAAGCATACGGAGTTCATTCC
766 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTCC
* * * * * * * *
19920740 TAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGCACATGCCTTGGCTTGGGCATGTGCTGG
830 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG-CTGGGCTCGGGCATGTGCTGG
* * * * *
19920804 TGTCGTATTATTCTTCG-CTGGGGCACCA---T-----CA-C--CGGAGAACCTAACCGAAGGCA
1 TGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * *
19920857 TTGGGGTTCCAGCGATTGGGGGGACCGGGGTGGTGTGCGCACATGATGAGCGATGGGTGCTGGTA
65 TTGGGGTTCGA-CGATCGGGGGG--CGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
19920922 CTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGC
126 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
*
19920987 ATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
191 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
** * * * * *
19921052 AAATGGTCACAAAATCTCATACACTTCGTGTTTTTTGTTGAATTTTTTTGTGCATGCCAAAAAAA
256 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
* * **
19921117 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAGAATTTTAAAAAATCTT
321 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCC
19921182 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-GAAGTCGTCTTGCCATGAAACTTCA
386 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG-AGTCGTCTTGCCATGAAACTTCA
* *
19921246 CGTGATGGCTTAAGGGACCATTGTATGAATTTACAAG-CAGTAAAAATGGCATTGGCACGCATAA
450 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCATTGGCACGCAGAA
* *
19921310 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTC
514 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
19921375 TTGTCGGCGTAGTGCCCACCCGTCCGACTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
579 TGGCCGGCGTAGTG--C-CCCG-CC--C-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
19921435 TTGACATTTT
Statistics
Matches: 10845, Mismatches: 1610, Indels: 1344
0.79 0.12 0.10
Matches are distributed among these distances:
810 2 0.00
812 2 0.00
813 1 0.00
814 6 0.00
815 37 0.00
816 12 0.00
817 9 0.00
818 3 0.00
819 10 0.00
820 11 0.00
821 20 0.00
822 15 0.00
823 25 0.00
824 15 0.00
825 19 0.00
826 13 0.00
827 17 0.00
828 13 0.00
829 17 0.00
830 12 0.00
831 15 0.00
832 15 0.00
833 22 0.00
834 11 0.00
835 30 0.00
836 33 0.00
837 46 0.00
838 32 0.00
839 34 0.00
840 18 0.00
841 26 0.00
842 26 0.00
843 120 0.01
844 74 0.01
845 99 0.01
846 47 0.00
847 47 0.00
848 126 0.01
849 38 0.00
850 60 0.01
851 98 0.01
852 16 0.00
853 16 0.00
854 3 0.00
855 83 0.01
856 38 0.00
857 168 0.02
858 113 0.01
859 3 0.00
860 155 0.01
861 10 0.00
862 5 0.00
863 16 0.00
864 16 0.00
865 19 0.00
866 15 0.00
867 18 0.00
868 11 0.00
869 12 0.00
870 47 0.00
871 5 0.00
872 192 0.02
873 108 0.01
874 76 0.01
875 268 0.02
876 104 0.01
877 11 0.00
878 13 0.00
879 9 0.00
880 12 0.00
881 3 0.00
882 12 0.00
883 21 0.00
884 11 0.00
885 32 0.00
886 112 0.01
887 550 0.05
888 275 0.03
889 82 0.01
890 13 0.00
891 22 0.00
892 27 0.00
893 232 0.02
894 56 0.01
895 272 0.03
896 656 0.06
897 732 0.07
898 1232 0.11
899 906 0.08
900 902 0.08
901 413 0.04
902 92 0.01
903 120 0.01
904 506 0.05
905 6 0.00
906 8 0.00
907 4 0.00
908 1 0.00
909 15 0.00
910 2 0.00
911 4 0.00
912 1 0.00
913 2 0.00
914 1 0.00
915 1 0.00
917 13 0.00
918 1 0.00
919 15 0.00
920 4 0.00
922 4 0.00
923 6 0.00
925 1 0.00
926 1 0.00
927 1 0.00
929 4 0.00
930 5 0.00
932 5 0.00
933 1 0.00
934 1 0.00
935 1 0.00
936 1 0.00
937 7 0.00
938 5 0.00
939 7 0.00
940 7 0.00
941 5 0.00
942 9 0.00
943 1 0.00
944 1 0.00
945 1 0.00
946 1 0.00
947 5 0.00
949 6 0.00
950 6 0.00
952 1 0.00
953 1 0.00
954 1 0.00
956 6 0.00
957 4 0.00
959 4 0.00
960 16 0.00
961 1 0.00
962 11 0.00
963 1 0.00
964 1 0.00
965 2 0.00
966 3 0.00
967 1 0.00
968 2 0.00
969 3 0.00
970 12 0.00
971 5 0.00
972 4 0.00
973 8 0.00
974 3 0.00
976 2 0.00
979 5 0.00
981 11 0.00
982 16 0.00
983 13 0.00
984 2 0.00
986 14 0.00
987 3 0.00
988 8 0.00
989 5 0.00
990 10 0.00
991 21 0.00
992 6 0.00
993 3 0.00
994 6 0.00
995 4 0.00
996 1 0.00
999 5 0.00
1001 2 0.00
1002 6 0.00
1003 6 0.00
1004 13 0.00
1005 10 0.00
1006 4 0.00
1007 6 0.00
1008 6 0.00
1009 13 0.00
1010 12 0.00
1011 5 0.00
1012 2 0.00
1013 1 0.00
1017 1 0.00
1019 3 0.00
1020 11 0.00
1021 14 0.00
1022 108 0.01
1023 9 0.00
1024 397 0.04
1025 560 0.05
1026 649 0.06
1027 665 0.06
1028 485 0.04
1029 659 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
TGGGGTTCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
CGTAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATGGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGCTGA
TCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
Found at i:19911060 original size:26 final size:26
Alignment explanation
Indices: 19911024--19911075 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19911014 TTGGCTTAGA
19911024 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
19911050 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
19911076 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:19912809 original size:26 final size:26
Alignment explanation
Indices: 19912780--19912832 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19912770 GTTGACTTAG
*
19912780 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19912806 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19912832 G
1 G
19912833 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19913715 original size:26 final size:26
Alignment explanation
Indices: 19913679--19913729 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19913669 TTGACTTAGG
*
19913679 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
19913705 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
19913730 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:19914612 original size:26 final size:26
Alignment explanation
Indices: 19914576--19914628 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19914566 GTTGACTTAG
* * *
19914576 GCATATGGAGTTCCTTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19914602 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19914628 G
1 G
19914629 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19915505 original size:26 final size:26
Alignment explanation
Indices: 19915463--19915515 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19915453 GTTGACTTAG
*
19915463 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGCTAATTCCCAGTCTAA
*
19915489 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTAATTCCCAGTCTAA
19915515 G
1 G
19915516 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTAATTCCCAGTCTAA
Found at i:19919068 original size:26 final size:26
Alignment explanation
Indices: 19919038--19919090 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19919028 GTTTACTTAT
* *
19919038 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
19919064 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
19919090 G
1 G
19919091 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:19920726 original size:26 final size:26
Alignment explanation
Indices: 19920696--19920748 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19920686 GTTGACTTAG
19920696 GCATACAGAGTTCATTCCCTA-TCTAA
1 GCATACAGAGTTCATT-CCTAGTCTAA
*
19920722 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
19920748 G
1 G
19920749 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:19921833 original size:447 final size:446
Alignment explanation
Indices: 19920985--19921881 Score: 1420
Period size: 447 Copynumber: 2.0 Consensus size: 446
19920975 CCCTTAAAGA
19920985 GCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
19921050 TCAAATGGTCACAAAATCTCATACACTTCGTGTTTTTTGTTGAATTTTTTTGTGCATGCCAAAAA
66 TCAAATGGTCACAAAATCTCATACACTTCGTGTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAA
* *** *
19921115 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAGAATTTTAAAAAATC
131 AAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* *
19921180 TTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGAAGTCGTCTTGCCATGAAACTTC
196 TTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGAAGTAGTCTTGCCATGAAACTTC
* * *
19921245 ACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCAGTAAAAATGGCATTGGCACGCATAA
261 ACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCAGTAAAAATGGCATTGGCACGCAGAA
* * **
19921310 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTC
326 AGATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTC
* * * *
19921375 TTGTCGGCGTAGTGCCCACCCGTCCGACTGCCCGCTCGTTTCGTCGGTTGGCTTAG
391 TGGTCGGCGTAGTGCCCACCCGCCCGACTGCCCGCTCATTTCATCGGTTGGCTTAG
*
19921431 GCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
1 GCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
19921496 TCAAATGGTCACAAAATCTCGTACACTTCGTGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTCATACACTTCGTGTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAA
* * * *
19921561 AAATTCAAGGATCATGTCTACCAGGTTTGGCGTCAAAACTCCTTCCAAAAAAATTTTAAAAAAAT
131 AAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTT-AAAAAAT
* * *
19921626 CTTGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAGAATAAGTAGTCTTGCCATGAAACTT
195 CTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGAAGTAGTCTTGCCATGAAACTT
19921691 CACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCA-TAAAAATGGCATTGGCACGCAG
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAG-CAGTAAAAATGGCATTGGCACGCAG
* ** *
19921755 AAAGATGAAGATGTACCTAAGCCCATGTACCACCCTATCGATCCACAGCTTGGGCATCCCATCTC
324 AAAGATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTC
* * * *
19921820 TCTGG-CTGGCGTAGTGCCCGCTCGCCCGCCTGCCCGCTTATTTCATCGGTTGGCTTAG
389 TCTGGTC-GGCGTAGTGCCCACCCGCCCGACTGCCCGCTCATTTCATCGGTTGGCTTAG
19921878 GCAT
1 GCAT
19921882 ACGAAGTTCA
Statistics
Matches: 411, Mismatches: 37, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
446 175 0.43
447 234 0.57
448 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (446 bp):
GCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTCATACACTTCGTGTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
TTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGAAGTAGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCAGTAAAAATGGCATTGGCACGCAGAA
AGATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTC
TGGTCGGCGTAGTGCCCACCCGCCCGACTGCCCGCTCATTTCATCGGTTGGCTTAG
Found at i:19922073 original size:26 final size:26
Alignment explanation
Indices: 19922037--19922089 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19922027 GTTGACTTAG
19922037 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19922063 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19922089 G
1 G
19922090 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19922972 original size:26 final size:26
Alignment explanation
Indices: 19922943--19922993 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19922933 TGACTTAGGC
*
19922943 ATACAGAGTTCATTCCCAGTCTAAGG
1 ATACAGAGTTCATTCCCACTCTAAGG
19922969 ATACAGAGTTCATTCCCACTCTAAG
1 ATACAGAGTTCATTCCCACTCTAAG
19922994 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCACTCTAAGG
Found at i:19923872 original size:26 final size:26
Alignment explanation
Indices: 19923842--19923894 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19923832 GTTGACTTAG
* *
19923842 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
19923868 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19923894 G
1 G
19923895 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19924775 original size:26 final size:26
Alignment explanation
Indices: 19924746--19924801 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19924736 TGGGTTGACT
*
19924746 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACAGAGTTCATTCCCAATC
*
19924772 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAATC
19924798 TAAG
1 TAAG
19924802 ATCGGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAATC
Found at i:19925199 original size:904 final size:902
Alignment explanation
Indices: 19921431--19926000 Score: 5848
Period size: 904 Copynumber: 5.1 Consensus size: 902
19921421 GTTGGCTTAG
* * *
19921431 GCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* * *
19921496 TCAAATGGTCACAAAATCTCGTACACTTCGTGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * * *
19921561 AAATTCAAGGATCATGTCTACCAGGTTTGGCGTCAAAACTCCTTCCAAAAAAATTTTAAAAAAAT
131 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-AAAAAAT
** * * * **
19921626 CTTGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAGAATAAGT-AGTCTTGCCATGAAACT
195 CCCGAACCGCTAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCA-TCTTGCCATGAAACT
*
19921690 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACGCAG
259 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * ** * * *
19921755 AAAGATGAAGATGTACCTAAGCCCATGTACCACCCTATCGATCCACAGCTTGGGCATCCCATCTC
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * ** *
19921820 TCTGGCTGGCGTAGTGCCCGCTCGCCCGCCTG--C-CCGCTTATTTCATCGGTTGGCTTAGGCAT
389 TCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * *
19921882 ACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGACGGTTGCAGTAGCAGGATCGGCAGCAG
454 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGGCAGCAC
* ** * ** * * *
19921947 GCAAAGAGGGACCCGCCCGATCCCCGGCTTGCGCATCCCGTTCCTCTGGCCGGCTGAGTGCTTGC
519 GCAAAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGT
19922012 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
584 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *** *
19922077 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAATAGCACATGTTGGGCTCGGGCATGTGCT
649 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
19922142 -GTGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTAACCGACGGC
714 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGACCGACGAC
* * * *
19922206 ATT-GGTTTCGACGATCGGGGGGGGGGGGCTGTGCGCACATGATGTGCGATAGGTGCTGGTACTT
779 ATTGGGTTCCGGCGATCGGGGGCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
19922270 GGCCCTTATATTGGCCTCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
843 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
19922330 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* *
19922395 TCAAATGGTGACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* **
19922459 AAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAAATTTTTCCGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
* * *
19922524 CCAAACCGC-AAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
196 CCGAACCGCTAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
* *
19922588 ACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
261 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
**
19922653 ATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
326 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
** * *
19922718 TATCC-AGCGTAATGCCTGCCCGCCCACCCGCCTGCCCGTCCGCTCGTTTCATCGGTTGGCTTAG
391 TGGCCGA-CGT-A-G--TGCCCGCCCGCCCGCCTGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAG
* * * * **
19922782 GCATACGGAGTTCATTCCCAGTCTAAGATCATATTGGATCAAGGGTTGCGGCAACAGGATCAACA
450 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGGCA
* * * *
19922847 GCACACAATGGGGGACCC-GACTGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCA
515 GCACGCAAAGGGGGACCCGGTC-GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-
** * * * *
19922911 TAC-GTACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGGATACAG
578 GCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGG
* * * * ** * * *
19922975 AGTTCATTCCCACTCTAAGATCGGACCAGACCGTGAGTTGCAACAACACATACCGGGCTCGGGCA
643 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * * *
19923040 TGTGCAGGTGCTGCATTTTTCTTCGTCGGGACACCATTG-CCGAAGCATCGTCGAAGAACCTGAC
708 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAG-AGCATCATCGGAGAACCTGAC
* * * * *
19923104 CGAAGACGTTAGGGTTCCGGCGAACGGGGGGGCCGGGGGGTGTGCACACATGATGTACGATGGGT
772 CGACGACATT-GGGTTCCGGCGATC--GGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
19923169 GCCGGTACTT-GCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTAAACCCCCTT
833 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
19923233 AAAGA
898 AAAGA
* * * *
19923238 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACAATTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* * * * *
19923303 TCAAATGCTCACAAAATCTTGAACACTTCGAGGTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
19923368 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
* * *
19923433 CTGAACCG-TAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
196 CCGAACCGCT-AAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* *
19923497 CACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAA
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
19923562 AATATGAAGATGTGCCTAAACCCACCTACCACCCTTTTGATCCACGGCTTGCGCATCCCGTCTCT
325 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
19923627 CTGGCAGACGTAGTGCCCGCTCGCCCGCC--CGC-CCGCTCATTTTGTCGGTTGGCTTACGCAT-
390 CTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * * ** *
19923688 CAGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGTGGTAGTAGGATCGGTAGCACG
455 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGGCAGCACG
* * * * * ** * *
19923753 CAGAA-GGGGACCCAGTTGATCCTCGGCTTGCGCATCCCACCTGTCTGGCTGGTTGAGCGCCTGT
520 CA-AAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGT
* * *
19923817 ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCA
584 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * *
19923882 TTCCCAATCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCACATTCTAGGCTCGGGCATGTGCT
649 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * * *
19923947 GGTGCCGTATTTGTCTTCGCCAGGGCACCATTGTCAGAGCATCATCGGAGAACCTGATCGGC-AG
714 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGACCGACGA-
* * * *
19924011 CATTGGGGTTCCGACGATCGGGGGGTTAGGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGC
778 CATT-GGGTTCCGGCGATC-GGGGG--CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
19924076 ACTTGGCCCTTACATTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
839 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
19924140 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGATAATTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* * *
19924205 TCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATCTTTTTGTGCATACCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
*
19924270 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
* * *
19924335 TCGAACCGCTAAAAGTTTTGAAAACCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
196 CCGAACCGCTAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
*
19924400 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
261 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
19924465 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTT
326 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
*
19924530 TGGCCGACATAGTGCCCGCCCGCCCGCCTGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATA
391 TGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * *
19924595 CGGAGTTCATTCCCAGTCTAAGACCAGACTGGACCGAGGGTTGCAACAACAGGTTCGACAGCACG
455 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGGCAGCACG
* ** * * *
19924660 CAGAGGGGGAGACGGTCGACCCCCGACCTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGTA
520 CAAAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGTA
* * * *
19924725 CGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCAT
585 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
19924790 TCCCAGTCTAAGATCGGATCGGACCAAGGGTTG-GGCAGTACATGCTGGGCTCGGGCATGTGTTG
650 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
*
19924854 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCATTGGAGAACCTGACCGACGACA
715 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGACCGACGACA
* *
19924919 TTGGGGTTCCGGCGATCAAGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
780 TT-GGGTTCCGGCGATC-GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
19924984 GGCCCTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGG
843 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
19925044 GCATTTGAGAGTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* * *
19925109 TCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATTCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * *
19925174 AAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
* * * **
19925239 CCAAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTT
196 CCGAACCGCT-AAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* * * *
19925303 CACGTGAATGCTTAAAGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGTAGA
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * *
19925368 CATATGAAGATGTGCCTAAACCCACCTACCGCCCTATC-ATTCCACGGCTTGCGCATCCCATCTC
325 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCCACGGCTTGCGCATCCCGTCTC
* ** * * *
19925432 TCTGGCCGACGTAGTGCCCACCC-ATC-CAT--CCGTTCGCTCGTTCCGTCGGTTCGG-TTAGGC
389 TCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCG-CCGCTCGTTTCGTCGGTT-GGCTTAGGC
** * * * * ** *
19925492 ATACAAAATTTATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTATGGCAATAGGATCGGCAGC
452 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGGCAGC
* *
19925557 ACGCAAAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCC-
517 ACGCAAAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCT
* * *
19925621 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATACGGAGTT
582 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
19925686 CATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTG
647 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
*
19925751 TTGGTGCC-CAATTTTTCTTCGTCGGGGCACCA---T---AG-----TCGGAGAACCT----GA-
712 CTGGTGCCGC-ATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGACCGAC
* * *
19925799 -TC--T--G-T----CG---GGGGGC-----ATGTGCGCACATGATGTGCGATGGGTGCTAGTAC
776 GACATTGGGTTCCGGCGATCGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * **
19925846 TTGGCCTTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACAACCTTAAAGA
841 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
19925908 GCATTTGATATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
*
19925973 TCGAATGGTCACAAAATCTTGTACACTT
66 TCAAATGGTCACAAAATCTTGTACACTT
19926001 TTTTCAAATG
Statistics
Matches: 3212, Mismatches: 415, Indels: 123
0.86 0.11 0.03
Matches are distributed among these distances:
864 171 0.05
869 5 0.00
873 2 0.00
877 1 0.00
878 1 0.00
881 1 0.00
883 1 0.00
885 2 0.00
889 10 0.00
894 2 0.00
896 171 0.05
897 17 0.01
898 69 0.02
899 195 0.06
900 212 0.07
901 305 0.09
902 470 0.15
903 5 0.00
904 715 0.22
905 55 0.02
906 142 0.04
907 196 0.06
908 156 0.05
909 123 0.04
910 184 0.06
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (902 bp):
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCGCTAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGGCAGCACGC
AAAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGTAC
GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGACCGACGACAT
TGGGTTCCGGCGATCGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
Found at i:19925686 original size:26 final size:26
Alignment explanation
Indices: 19925648--19925700 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19925638 GTTGACTTAG
*
19925648 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19925674 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19925700 G
1 G
19925701 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19929233 original size:907 final size:899
Alignment explanation
Indices: 19926982--19929537 Score: 3464
Period size: 903 Copynumber: 2.8 Consensus size: 899
19926972 TGGGGTTCCG
* * * **
19926982 GGGGGGTATGCGTATATGATGTGCGATTACTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCC
* * *
19927047 CTCATCAAACCTCAATAACTCAAACCCCCTTAAAGAGCGTTTGAGATTTTATAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
19927112 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA--C-
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCG
* * *
19927174 --TTTTTAGCTGAATTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGG
196 AGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
19927237 GGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTATGA
261 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTATGA
* * * *
19927302 AAAATAGAAAATGAGTCGTCTCGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAA
326 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
19927367 TTTACAAGCAATAAAAATGGCATTGGCATGCCGAAATACGAAGATGTGCCTAAACCCACCTGCCA
391 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
19927432 CCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGAAGTGCACGCCTACCCGCCCG
456 CCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGG-CGGCGAAGTGCCCGCCTGCCCGCCCG
** * * *
19927497 CCTACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATCAGACTAGAC
520 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA-TCTAAGATCAGACTAGAC
* * * * * * * *
19927562 TGAGGGTTGTAGCAGTAGGGTCGGTAGCACACAGAGAGGGACCC-AGTCAATCCCCGGCTTGCGC
584 TGAGGGTTGCAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCAATCCCTGGCTTGAGC
* * * * * * *
19927626 ATCCTGCCCCTCTGGCCGGTTAAGTGCCCGCACACCCGTTTCGTGTGTTAACTCAGGCATACGTA
648 ATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * **
19927691 GTTCATTCCCTA-TCTAAGCATACGAAGTTCATTCCTAGCCAAAGATCAAATTGGACCAAGGGTT
713 GTTCATTCCC-AGTCTAAGCATACGAAGTTCATTCCCAACCAAACATCAAACCGGACCAAGGGTT
* * * * * *
19927755 GCAGCAGCACATGCTAGGCTCGGGATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGT
777 ACAGCAGCACATGCTAGGCTCGGGATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACAATCAT
* * ** ** *
19927820 CGGAGCATCGCCGGAGAACCTGTTCGGCGGCATTGGGGTTCTGGAGATCGGGGGGGTC
842 CGGAGCATCGCCAGAGAACCGGACCGGCGGCATTGGGGTTCCAGAGATCGGGGGGGCC
* *
19927878 GGGGGGTGTGCGCACATGATGTGCGTTGGCTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATTC
1 GGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCC
* * *
19927943 CTCATCAAACCTAGAGAACTCAAACCCCCTTGAAGAGCATTTGAGATTTTATAGGTTTGTTGCCA
66 CTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
** *
19928008 GTAGCCATTAAAGTGTCTGAAGCGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACATC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TC
* ** *
19928073 GAGTTTTTAGCTGAATTTTTTTTGTGCACACCAACAAAAATACAAGGATTACGTCTACCAAGTTT
195 GAGTTTTTAGCT-AAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
19928138 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
259 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTAT
* * * * *
19928203 GAAAAATAGAAAACGAGTCATCTTGCCATTAAACTCCACGTGATGGCTTAAGGGACCATTTTATG
324 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
19928268 AATTTACAAACCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
389 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
19928333 CACCCTATCGATCCACGGCTAGTGCATCTCGTCTCTCTGGTCGGGGTAA-TGCCCGCCCGCCCGC
454 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGG-CGGCG-AAGTGCCCGCCTGCCCGC
* ** * *
19928397 CCGCCCGCTCGTTTCATCGGTTGGCTTAGACATGTGGAGTTCATTCCCTATCTAAGATCAAATTA
517 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC-ATCTAAGATCAGACTA
* * * * * *
19928462 GACTGAGAGTTGCAGCAGTAGGATCAGCAGCATGCAGCGGGGGACCCGACCGATCCCTGGCTTGT
581 GACTGAGGGTTGCAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCTGGCTTGA
* ** * *
19928527 GTATCCTGCCCCTCTGGCCGGTTGAGCGCCTACACACTCATTTCGTGGGTTGACTTAGGCGTACG
646 GCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACG
* *** ** *
19928592 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATTTAACATTGAACCGGACCGAGGGT
711 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAACCAAACATCAAACCGGACCAAGGGT
* ** * *
19928657 TACGGCAGCATGTGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACAATC
776 TACAGCAGCACATGCTAGGCTCGGG-ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACAATC
*
19928722 ATCGGAGCATCGCCAGAGAACCGGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCC
840 ATCGGAGCATCGCCAGAGAACCGGACCGGCGGCATTGGGGTTCCAGAGATCGGGGGGGCC
* * * * * * *
19928782 AGGGGGGCTGTGTGCGCACATGTTGTGTGATGGGTGCTGTTTCTTGGCCCTTATATTGGCCCCTT
1 --GGGGG--GTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATAGTGGCCCCCT
*
19928847 ATCCCTCATCAAACCTCGAGAACT-AACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
62 ATCCCTCATCAAACCTCGAGAACTCAA-ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
* * *
19928911 TGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGATATTTTTTTCAAATGGTCACAAAATCTTGTAC
126 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
19928976 ACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA-AAGAAATACAAGGATCACGTCTACCA
191 AC-TCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAA-AAATACAAGGATCACGTCTACCA
* *
19929040 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCATAAAAAGTTTTAAAA
254 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAA
*
19929105 ATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
319 ATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
19929170 GTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATGTGAAGATGTGCCTAAACCCA
384 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
*
19929235 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGAAGTGCCCGCCTGC
449 CCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGC-GGCGAAGTGCCCGCCTGC
* * *
19929300 CCGCCTGCCCGCTCGTTTCATCGATTGGCTTGGGCATACGGAGTTCATTCCCAATCTAAGATCAG
513 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC-ATCTAAGATCAG
* * * * * * *
19929365 ACTGGACCGAGGGTTGC-GACAGCAGGATCGGCAGCACGTAGAGGGGGACTCGACCAAT-GCTCA
577 ACTAGACTGAGGGTTGCAG-CAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCT-G
* * * * ** *
19929428 GCTTGAGCATCCCGCCCCTCTGGCCAGCTGGGCGCCCGTTCACTCGTTTCGTGGGTTGCCTTAGG
640 GCTTGAGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
*
19929493 CATACGGAGTTCATT-CCTGATCTAAGCATACGAAGTTCATTCCCA
705 CATACGGAGTTCATTCCCAG-TCTAAGCATACGAAGTTCATTCCCA
19929538 GCCTAAGATC
Statistics
Matches: 1442, Mismatches: 195, Indels: 35
0.86 0.12 0.02
Matches are distributed among these distances:
896 175 0.12
899 1 0.00
902 10 0.01
903 501 0.35
904 89 0.06
906 16 0.01
907 470 0.33
908 180 0.12
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCG
AGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCGGCGAAGTGCCCGCCTGCCCGCCCGC
CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCATCTAAGATCAGACTAGACTG
AGGGTTGCAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCTGGCTTGAGCATC
CTGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGAAGTTCATTCCCAACCAAACATCAAACCGGACCAAGGGTTACAG
CAGCACATGCTAGGCTCGGGATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACAATCATCGGA
GCATCGCCAGAGAACCGGACCGGCGGCATTGGGGTTCCAGAGATCGGGGGGGCC
Found at i:19929543 original size:26 final size:26
Alignment explanation
Indices: 19929492--19929544 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
19929482 GTTGCCTTAG
* * *
19929492 GCATACGGAGTTCATTCCTGATCTAA
1 GCATACGAAGTTCATTCCAGACCTAA
19929518 GCATACGAAGTTCATTCCCAG-CCTAA
1 GCATACGAAGTTCATT-CCAGACCTAA
19929544 G
1 G
19929545 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAGACCTAA
Found at i:19929661 original size:185 final size:185
Alignment explanation
Indices: 19929333--19929694 Score: 467
Period size: 185 Copynumber: 2.0 Consensus size: 185
19929323 ATTGGCTTGG
* * * * * *
19929333 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGGCA
1 GCATACGAAGTTCATTCCCAACCTAAGATCAGACTAGACCCAGGGTTGCGACAACAGGATCGACA
* * * * **
19929398 GCACGTAGAGGGGGACTCGACCAATGCTCAGCTTGAGCATCCCGCCCCTCTGGCCAGCTGGGCGC
66 GCACGCAGAGGGGGACCCGACCAATCCTCAGATTGAGCATCCCGCCCCTCTGGCCAGCTGAACGC
** *
19929463 CCGTTCACTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCTGATCTAA
131 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTGATCTAA
* * *
19929518 GCATACGAAGTTCATTCCCAGCCTAAGATCGGA-TCAGACCCAGGGTTGCGACAATAGGATCGAC
1 GCATACGAAGTTCATTCCCAACCTAAGATCAGACT-AGACCCAGGGTTGCGACAACAGGATCGAC
** * * *
19929582 AGCACGCAGAGGGGGACCCGGTCGATCCTCAGATT-ACGCATCCCGCCCCTCTGGCCGGCTGAAT
65 AGCACGCAGAGGGGGACCCGACCAATCCTCAGATTGA-GCATCCCGCCCCTCTGGCCAGCTGAAC
* *
19929646 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCC
129 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
19929695 CAGTCTAAGA
Statistics
Matches: 150, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 2 0.01
185 148 0.99
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.22
Consensus pattern (185 bp):
GCATACGAAGTTCATTCCCAACCTAAGATCAGACTAGACCCAGGGTTGCGACAACAGGATCGACA
GCACGCAGAGGGGGACCCGACCAATCCTCAGATTGAGCATCCCGCCCCTCTGGCCAGCTGAACGC
CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTGATCTAA
Found at i:19930593 original size:26 final size:26
Alignment explanation
Indices: 19930557--19930609 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19930547 GTTGACTTAG
*
19930557 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19930583 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19930609 G
1 G
19930610 ATCGAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19931488 original size:26 final size:26
Alignment explanation
Indices: 19931452--19931504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19931442 GTTGACTTAG
19931452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19931478 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19931504 G
1 G
19931505 ATCGGCCCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19932078 original size:907 final size:901
Alignment explanation
Indices: 19929677--19932221 Score: 3833
Period size: 895 Copynumber: 2.8 Consensus size: 901
19929667 GTTGACTTAG
* * ** * * *
19929677 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACTGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* ** *
19929742 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCATAATCGTCGGAGCATCGCCAGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC-TC-GAGCATCG-CGGAGA
* * * *
19929807 ACCTGACCGGA-GGCATTGGGGTTTCGACGATCGGGAGGGCCGGGGGGGGTGCGCACATGATGTA
128 ACCTGACC-GACGGCATTAGGGTTCCGGCGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTA
* * * **
19929871 CGATGGGTCTTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGACAACTGAC
191 TGATGGGTC-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-AACCCAC
*
19929936 ACCCCCTT-AAGAAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
254 ACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19930000 TGGGGATATTTTTTTCACATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGA-TTTTTT
318 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19930064 GTGCATGCAAACAAAAATAGAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAA
383 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAA
* *
19930129 AATTTTAAGAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
448 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
19930194 TGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
513 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
19930259 ATTGGCATGCAGAAATATGAAGATGTT-CCTAAACCCACCTACCACCCTATCGATCCACGACTTA
578 ATTGGCACACGGAAATATGAAGAT-TTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
19930323 CGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCAGCCCGTCCGCTCGTTTCATCG
642 CGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCAGCCCGTCCGCTCGTTTCATCG
19930388 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGATCGGATCGAAGGCTACGGCAGC
707 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGATCGGATCGAAGGCTACGGCAGC
19930453 AAGATCGGCAGCACGTAGAGGGGGACCTGATCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCT
772 AAGATCGGCAGCACGTAGAGGGGGACCTGATCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCT
19930518 TGCTGAGCGCCCGTACACACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 TGCTGAGCGCCCGTACACACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
19930583 GCATACGGAGTTCATTCCCAATCTAAGATCGAATTGGACCGAGGGTTGTGGCAACACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * *
19930648 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCA--TC--G---C-CGGAGAACC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCTCGAGCATCGCGGAGAACC
* * *
19930705 T-ACCGGCGGCATTAGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCTCACATGATGT-TCGT
131 TGACCGACGGCATTAGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTAT-GA
* *
19930768 TGGGTACCGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAAACCTCACACC
194 TGGGT-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAACC-CACACC
* * *
19930833 CCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTGTCTGAAATGGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
19930898 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
19930963 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAAAAAAAAT
387 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAAT
* ** * * *
19931027 TTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATAAAAAATAAAAAACGAGTCGTCTTGC
451 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
19931092 CATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACGAGCCATAAAAATGGCACT
516 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
19931157 -GC-CATGTAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
581 GGCACACG--GAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
19931220 TATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCAGCCCGTCCGCTCGTTTCATCGGT
644 TATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCAGCCCGTCCGCTCGTTTCATCGGT
19931285 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGATCGGATCGAAGGCTACGGCAGCAA
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGATCGGATCGAAGGCTACGGCAGCAA
19931350 GATCGGCAGCACGTAGAGGGGGACCTGATCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCTTG
774 GATCGGCAGCACGTAGAGGGGGACCTGATCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCTTG
19931415 CTGAGCGCCCGTACACACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CTGAGCGCCCGTACACACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19931478 GCATATGGAGTTCATTCCCAGTCTAAGATCGGCCCGGACCAAGGGTCGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* *
19931543 CTCGAGCATGTGCTGGTACCGCATTTTTCTTCACCGGGACACCATCTCCGAAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCT-CG-AGCATCG-CGGAGA
* * * *
19931608 ACTTGACCGACGGCATTTGGGTTCCGGTGATCTGGGGGGTCGGGGGGTGTGCGCACATGATGTAT
128 ACCTGACCGACGGCATTAGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTAT
* *
19931673 GATGGGTGCTGTTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACA
192 GATGGGT-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-AACCCACA
* * * *
19931738 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAACCATTAAAGTGTCTGAAATA
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19931803 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGT
320 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
19931868 GCATGCCAAGAAAAATACAATGATCATGTCTACCAAGTTTGGAGG-CGAAACTCCTTTCGAAAAA
385 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTTCAAAAAA
* * *
19931932 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTAGTCTT
449 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
19931997 GCCA-GAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
514 GCCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19932061 ATTGGCACACGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
578 ATTGGCACACGGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
19932126 GCATCCCATTTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC-G--C--CCGCTCGTTTCATCG
643 GTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGC-CAGCCCGTCCGCTCGTTTCATCG
*
19932186 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA
707 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
19932222 CCATACGGAG
Statistics
Matches: 1481, Mismatches: 126, Indels: 67
0.88 0.08 0.04
Matches are distributed among these distances:
893 4 0.00
894 215 0.15
895 600 0.41
897 2 0.00
898 1 0.00
900 1 0.00
901 1 0.00
903 52 0.04
904 1 0.00
905 1 0.00
906 99 0.07
907 487 0.33
908 14 0.01
909 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCTCGAGCATCGCGGAGAACC
TGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTATGATG
GGTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAACCCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAA
AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACGGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCAGCCCGTCCGCTCGTTTCATCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAATATCAGATCGGATCGAAGGCTACGGCAGCAAGATCGGC
AGCACGTAGAGGGGGACCTGATCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCTTGCTGAGCG
CCCGTACACACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19932227 original size:26 final size:26
Alignment explanation
Indices: 19932197--19932247 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19932187 TTGGCTTAGG
19932197 CATACGGAGTTCATTCCCAATCTAAC
1 CATACGGAGTTCATTCCCAATCTAAC
19932223 CATACGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATTCCCAATCTAA
19932248 GATCAGACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAC
Found at i:19932550 original size:26 final size:26
Alignment explanation
Indices: 19932521--19932573 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19932511 GTTGACTTAG
*
19932521 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19932547 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19932573 G
1 G
19932574 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19934209 original size:26 final size:26
Alignment explanation
Indices: 19934173--19934252 Score: 151
Period size: 26 Copynumber: 3.1 Consensus size: 26
19934163 GTTGACTTAG
19934173 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19934199 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19934225 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19934251 GC
1 GC
19934253 TTGGACCAGA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19935128 original size:26 final size:26
Alignment explanation
Indices: 19935092--19935144 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19935082 GTTGACTTAG
*
19935092 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19935118 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19935144 G
1 G
19935145 ATTAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19936882 original size:26 final size:26
Alignment explanation
Indices: 19936846--19936898 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19936836 GTTGACTTAG
19936846 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTGCC-AGTCTAA
19936872 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
19936898 G
1 G
19936899 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:19937957 original size:868 final size:861
Alignment explanation
Indices: 19934225--19939337 Score: 5380
Period size: 868 Copynumber: 5.8 Consensus size: 861
19934215 CCCAGTCTAA
* * * *
19934225 GCATAC-GAAGTTCATTCCCAGTCTAAGCTTGGACCAGACCAAGGGTTGCGGCAGCACATGCTGG
1 GCATACTG-AGTTCATTCCCAGTCTAAG-ATCGACCAGACCGAGGGTTGCGACAGCACATGCTGG
* * * *
19934289 GCTC-AGGCATGTGCTGGTGCCGTATTTTGCTTCATC-GGGCACCATCATCGTAGCATCGCCGGA
64 GCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGA
* * * * *
19934352 GAACTTGACCGACGACATTGGGGTTCCGGCGATCGGGGAGGCC-GGGGGGTGTGCGCACATGATG
128 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGG-GGCCGGGGGGGTGTGCGCACATGATG
*
19934416 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCGAGAACT
192 TGCGATGGGTGCTGGTA------CC---T-TTGG-CCCCCTATCCCTCATCAAACCTCGAGAACT
19934481 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-A
246 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
19934544 ATATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGT
311 A-ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
* * *
19934609 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
375 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCCTTCGA
* * * **
19934674 AAAAATTTTAAAAAATCCTGAACCGCAAAAACTTTCAAAAATTATGAAAAATAGAAAACGAGTCG
440 AAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTT-TAAAATCGTGAAAAATAGAAAACGAGTCG
*
19934739 TCTTG-CATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
503 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19934803 GGCATTGGCACGCAGAAATATGAAGATGTGCATAAACGCACCTCCCACCCTATCGATCCACTGCT
568 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
19934868 TTCGCATCCCGTCTCTC-GACCGACGTAGTGCCCGCCCGCCCG-TCAGCCCGCTCATTTTGTCAG
633 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA-CCCGCTCATTTCGTCAG
* * * * *
19934931 TTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-GAACCA------CGACAGCA
697 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTGCGGCAGCA
* * ** *
19934989 GGATCGGTAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCC-CACCTTTCTGGCC
762 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCC-GGCTTGCGCATCCGC-CC-CTCTGGCC
19935053 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
824 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TAG
* ** * *
19935092 GCATA-TGGAGTTCATTCCCAGTCTAAGCAT--ACGGAGTTC-A---TT-C-CCAGTCTA-A-GA
1 GCATACT-GAGTTCATTCCCAGTCTAAG-ATCGAC-CAGACCGAGGGTTGCGACAG-C-ACATGC
** * * * * * * *
19935146 TTAGATC-AGACTAAGGGTTGCG-GCAGCACATTTTTCTTCTA-CGAGGCACCATCACCGGAGCA
61 TGGGCTCGAG-C-ATGTGCTG-GTGC--CGCATTTTTCTTC-ACCGGGGCACCATCATCGGAGCA
* * * *
19935208 TCGCCGTAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATC-GGGGAAGCTAGGAGGGGGGTGT
120 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGG--GC--CG-GGGGGGTGT
19935272 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATGTATTGGCCCCCTATCCCTCATCAAA
180 GCGCACATGATGTGCGATGGGTGCTGGTA------CC---T-TTGGCCCCCTATCCCTCATCAAA
* *
19935337 CCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATT
235 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
19935402 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
300 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
19935467 GCTGAA-TGTTTTTGTCCATGCCAAAAAAAA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAC
365 GCTGAATTG-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* ** *
19935530 ACT-CCTTCCGAAAAAATTTTAAAAAATCTTGAACCCCAAAAAGTTTTAAAAATCGTGAAAAATA
429 AATCCCTT-CGAAAAAATTTTAAAAAATCCCGAA-CCGAAAAAGTTTT-AAAATCGTGAAAAATA
* *
19935594 GAAAATGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
491 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
19935659 AGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCGTAT
556 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * ***
19935724 CGATCCACGGCTTGCGCAT-CCGTCTATCTGGCCGACGTAGTGCCCGGCCGTTAGCCCGA-CCGC
621 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC-ACCCGC
* * * * * **
19935787 TCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGATGGAGG
685 TCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGG
* * * * * ** * *
19935852 GTTGCAGTAGCAAGATCGACAGCACGCAGAAGGGTTCCTGGTCGATCCCCGCTTGCGCATTCCGC
750 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCGGCTTGCGCA-TCCGC
* *
19935917 CCCTCTGCCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAG
814 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG----A--C-T--AG
* *
19935974 AGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATT
1 -G--------CA---T-A-C-T---GAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTT
** * * * *
19936039 GCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGCGGCACCATCG
47 GCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCA
* * *
19936104 TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-AGTGATCGGGGGGGCCGGGGG
112 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-AGGGGGCCGGGGG
19936168 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
175 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTA------CC---T-TTGGCCCCCTATCCCTCA
* * *
19936233 TCAGACCTTGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
230 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
19936298 CCATTAAAGTGCCTGAAATGGGGACATTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGATT
295 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
19936363 TTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAATACAAGGATCATGTCTACCAAGTTTGGGGT
360 TTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * **
19936427 CGAAACT-CCTTCCAAAAAAAATTTAAAAAAATCCCGAATCGTAAAAAGTTTTAAAAATTATGAA
425 CAAAAATCCCTT-C-GAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTT-AAAATCGTGAA
19936491 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
486 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
19936556 TTACAAGCCATAAAAATGGCAGTGGCACACAGCAATATGAAGATGTGCCTAAACCCACCTACCAC
551 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
19936621 CCTATCGATCCACAGCTTGGGCATCCCGTCTCTTTGGCCGACGT--TG--TGCCCGCCCG----C
616 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCAC
* * * ** * *
19936678 TCGCTCGTTTCGTCGGTTTACATAGGCATACGGAGTTCATTCCCAGTCTAAGAT--GACACTGGA
681 CCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TC-GGA
* * * * *
19936741 TCAAGGGTTACAGCAGCAGGATCGGCAACACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGC
744 TCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT-CCCGGCTTGCGC
* * * * ** * * * *** * *
19936806 ATCCCGCCCCTCTGAACGCTCGTTTCGTGGGTTG-ACTTAGGCATACGGAGTTCATTCCTAGTCT
808 AT-CCGCCCCTCTG---GC-CG--GC-TGAG-CGCCCGCACGC-T-C-G-TTTCGTGGGTTGACT
*
19936870 AA
860 AG
* * *
19936872 GCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGA
1 GCATACTGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * ** * *
19936937 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG--------T--G-CCATCGCCGGAAA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * *
19936991 ACCTGACCGACGGCATAGGGGTTCCGACGATCAGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
19937056 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTA------CC---T-TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19937121 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTTAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19937186 GGGACACTTTTTTCAAATTGTCACAAAATC-TGTACACTTCGAG-TTTTAGCTGAATTGTTTTGT
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
* * *
19937249 GCAATGCCCAAAAAAAAAATACAAGGATCAC-TCCA-CATGTTTAGGGCCAAAAATCCCTTCTGA
380 GC-ATG-CC--AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCCTTC-GA
* * *
19937312 AAAAATTTTTAAAAAATCCTGAACCGTAAAAGTTTTGAAATCGTG-AAAATAGAACAACGAGT-G
440 AAAAA-TTTTAAAAAATCCCGAACCGAAAAAGTTTTAAAATCGTGAAAAATAGAA-AACGAGTCG
*
19937375 CTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
503 -TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
19937440 TGGCATTGGCACACAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCAACGGC
567 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
19937505 TTGTGCATCCCGTCTCTCTGGCCGACGTAAGTG-CTGCCCGCCCGCCCACTCCGCATCATTTCGT
632 TTGCGCATCCCGTCTCTCTGGCCGACGT-AGTGCCCGCCCGCCCGCCCAC-CCGC-TCATTTCGT
* * * *
19937569 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGTGGCA
694 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTGCGGCA
* * *
19937634 ACAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTACGCATCCTGACCCTCTGG
759 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC-CGGCTTGCGCATCC-GCCCCTCTGG
* * * **
19937699 CTGGTTGAGCGCCCGCACGCTGGTTTTATGGGTTGACATAG
822 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TAG
* * *
19937740 GCATACTGAGTTCATTCTCAGTCTAAGATCGCACCGGACCGAGGGTTGCGACAGCACACGCTGGG
1 GCATACTGAGTTCATTCCCAGTCTAAGATCG-ACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
19937805 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCTTCGTTGGAGCATCGTCGGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * *
19937870 ACCTGATCGGCGGCATTAGGGTTCCGACGAT-AGGGGGCCGGGTGGGGGTTTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCC-GG-GGGGGTGTGCGCACATGATGT
* * *** ** ***
19937934 GCGATGGGTGCTGGTA-C-TTGG-CCCTTAT--ATTGGC-CGCCT--ATCCCTCACACCCCCTTA
193 GCGATGGGTGCTGGTACCTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
19937991 AAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCAATTAAA-AGTCTGAAATGGGGACAC
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGACAC
* * *
19938055 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATGTTTTTTGTGCATTC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TGTTTTGTGCATGC
* * ** *
19938119 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTC-AGAAAATTTTAA
386 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCCTTCGAAAAAATTTTAA
* * * ** *
19938183 AAAATCCCGAACCACAAAAAGTTTCAAAATCGTGAAAAATATAAAACGAGTCACCGTGCCATGAA
451 AAAATCCCGAACC-GAAAAAGTTTTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
19938248 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
515 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
19938313 CAGAAATATTAAGATGTACCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
580 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * ** * * *
19938378 CTTTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCTGCCCACTCGTTTCTTCTA-TTGGCTTAGGCA
645 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTC-AGTTGGCTTAGGCA
* * * * * * *
19938442 TACGGAGTTCATT-CCAGTCTAAGTTTGGATAGGACCAAGGGTTGCGACACCAAGATCGGCAGCA
709 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * **
19938506 CGTAGAGGGGGA-CCAGTCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTA
774 CGCAGAGGGGGACCCGGTCGATCC-CGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCG
*
19938570 CACGCTCATTTCGTGGGTTGACTGAG
837 CACGCTCGTTTCGTGGGTTGACT-AG
* * *
19938596 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCACATGCTGCG
1 GCATACTGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
19938661 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCTAGGGCACCATCATCGAAGCATCGCTGGAG
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGGGCACCATCATCGGAGCATCGCCGGAG
* * * ** * *
19938725 AACCTAACCGGCGGCATTGGGGTTCCGGCGAT-TGGAGGGTAGTGGGGGTGTGCACACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCAGG-GGGCCGGGGGGGTGTGCGCACATGATGT
*
19938789 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTA------CC---T-TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
19938854 AACCCCTTTAAAGAGCATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
19938919 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATGTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TGTTT
* * * *
19938983 TGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACAAAAACTCCTTTCGAA
377 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCCTTCGAA
* * *
19939047 AAAATTTTAAAAAATCCCGAACTGTAAAATGTTTTGAAAATCGTTAAAAATAGAAAACGAGTCGT
441 AAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTT-AAAATCGTGAAAAATAGAAAACGAGTCGT
* *
19939112 CTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATG
504 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
19939177 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
569 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
19939242 GCGCATCTCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGCCCGCCCCCTCATTTCGTCGGTT
634 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTCAGTT
*
19939307 GGCTTAGGCATACGAAGTTCATTCCCAGTCT
699 GGCTTAGGCATACGGAGTTCATTCCCAGTCT
19939338 GAGCAAACGG
Statistics
Matches: 3602, Mismatches: 461, Indels: 357
0.81 0.10 0.08
Matches are distributed among these distances:
855 38 0.01
856 201 0.06
857 57 0.02
858 33 0.01
859 27 0.01
860 212 0.06
861 21 0.01
862 118 0.03
863 36 0.01
864 77 0.02
865 5 0.00
866 27 0.01
867 210 0.06
868 829 0.23
869 73 0.02
870 32 0.01
871 29 0.01
872 25 0.01
873 169 0.05
874 79 0.02
875 261 0.07
876 10 0.00
877 7 0.00
878 119 0.03
879 40 0.01
880 124 0.03
882 2 0.00
883 1 0.00
884 1 0.00
885 1 0.00
886 1 0.00
889 2 0.00
891 2 0.00
893 2 0.00
894 2 0.00
895 93 0.03
896 23 0.01
897 1 0.00
898 2 0.00
899 8 0.00
900 30 0.01
901 254 0.07
902 189 0.05
903 25 0.01
904 70 0.02
905 5 0.00
906 15 0.00
907 13 0.00
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (861 bp):
GCATACTGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGACAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACCTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCCTTCGAAAAAATTTTAAAAAAT
CCCGAACCGAAAAAGTTTTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
GGGGACCCGGTCGATCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTAG
Found at i:19940026 original size:744 final size:737
Alignment explanation
Indices: 19938591--19940073 Score: 2185
Period size: 744 Copynumber: 2.0 Consensus size: 737
19938581 CGTGGGTTGA
* * *
19938591 CTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCACATG
1 CTGAGGCAAACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCACATG
* *
19938656 CTGCGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCTAGGGCACCATCATCGAAGCATCGCT
66 CTGCGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCCCTAGGGCACCATCACCGAAGCATCGCT
* * * *
19938721 GGAGAACCTAACCGGCGGCATTGGGGTTCCGGCGATTGGAGGGTAGTGGGGGTGTGCACACATGA
131 GGAGAACCTAACCGGCGGCATTGGGGTTCCGACAATGGGAGGGTAGAGGGGGTGTGCACACATGA
* *
19938786 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAAC
196 TGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
19938851 TCAAACCCCTTTAAAGAGCATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
261 TCAAACCCCCTTAAAGAGCATTAGAGATTTTACAGGTTTGCCGCCAATAGCCATTAAAGTGTCTA
* * *
19938916 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATGTTT
326 AAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTATTTAGCTGATGCTT
*
19938981 TTTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACAAAAACTCCTTTCGA
391 TTTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGACAAAAACTCCTTTCGA
* * ** * *
19939046 AAAAATTTTAAAAAATCCCGAACTGTAAAATGTTTTGAAAATCGTTAAAAATAGAAAACGAGTCG
456 AAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
19939111 TCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAAT
521 TCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCAGTGTATGAATTTACATGCCATAAAAAT
* *
19939176 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
586 GCCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19939241 TGCGCATCTCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGCCCGCCCCCTCATTTCGTCGGT
651 TGCGCATCCCGTCTCTCTAGTCGACGTA------G--AGCCCGCCCGCCCCCTCATTTCATCGGT
19939306 TGGCTTAGGCATACGAAGTTCATTCCCAGT
708 TGGCTTAGGCATACGAAGTTCATTCCCAGT
*
19939336 CTGA-GCAAACGGAGTTCATTCCCAGTCTAAAATCAGACC-GAACCGAGGGTTGCGGCAGCACAT
1 CTGAGGCAAACGGAGTTCATTCCCAGTCTAAAATCAGACCAG-ACCGAGGGTTGCGACAGCACAT
* * * * *
19939399 GCGTG-GCTCAGGCATGTGCTGGTGCCGTATTTTTCATTGCC-GGGGCACCATCGCCGGAGCATC
65 GC-TGCGCTCAGGCATGTGCTGGTGCCGCATTTTTC-TTCCCTAGGGCACCATCACCGAAGCATC
* ** * * *
19939462 G-TCGGAGAACCTGACCGGCGGCATTGGGGTTTTGACAATCGGGGGGGTCGAGGGGGTGTGCGCA
128 GCT-GGAGAACCTAACCGGCGGCATTGGGGTTCCGACAAT-GGGAGGGTAGAGGGGGTGTGCACA
* * *
19939526 CATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTTTCCCTCATCAAAGCTCT
191 CATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
19939591 AGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCTAATTGCCATTAAAGT
256 AGAACTCAAACCCCCTTAAAGAGCATTAGAGATTTTACAGGTTTGCCGCCAATAGCCATTAAAGT
* *
19939656 GTCTAAAATGGGGACATTTTTTTCAAATGGCCGCAAAATCTTGTACACTTCGAGTATTTAGCTGA
321 GTCTAAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTATTTAGCTG-
*
19939721 AT-CTTTTTGTGCATG-CAAACAAAAATACAAGGATCACGTCTACCAACTTTGGG-CCAAAACTC
385 ATGCTTTTTGTGCATGTC-AACAAAAATACAAGGATCACGTCTACCAACTTTGGGACAAAAACTC
19939783 C-TTCTGAAAAAATTTTAAAAAATCCCGAACCT-CAAAAAGTTTCAAAAATCATGAAAAATAGAA
449 CTTTC-GAAAAAATTTTAAAAAATCCCGAA-CTGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
19939846 AACGAGTCGTCTTGCTATGAAATTTCACGTGAACGCTTAAGGGACCAGTGTATGAATTTACATGC
512 AACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCAGTGTATGAATTTACATGC
*
19939911 CATAAAAATGCCATTGGCATGTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGA
577 CATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGA
* * * * *
19939976 TCCACGGCTTGTGCATCCCGTCTCTCTGGTTGGCGTAGAGCCCGCCCGCCCCCTCGTTTCATCGG
642 TCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGAGCCCGCCCGCCCCCTCATTTCATCGG
*
19940041 TTGGCTTAGGCATACGAAGTTCATTCCTAGT
707 TTGGCTTAGGCATACGAAGTTCATTCCCAGT
19940072 CT
1 CT
19940074 AATATCAGAC
Statistics
Matches: 667, Mismatches: 62, Indels: 27
0.88 0.08 0.04
Matches are distributed among these distances:
736 56 0.08
738 1 0.00
743 5 0.01
744 347 0.52
745 256 0.38
746 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (737 bp):
CTGAGGCAAACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCACATG
CTGCGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCCCTAGGGCACCATCACCGAAGCATCGCT
GGAGAACCTAACCGGCGGCATTGGGGTTCCGACAATGGGAGGGTAGAGGGGGTGTGCACACATGA
TGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCAAACCCCCTTAAAGAGCATTAGAGATTTTACAGGTTTGCCGCCAATAGCCATTAAAGTGTCTA
AAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTATTTAGCTGATGCTT
TTTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGACAAAAACTCCTTTCGA
AAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCAGTGTATGAATTTACATGCCATAAAAAT
GCCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTAGTCGACGTAGAGCCCGCCCGCCCCCTCATTTCATCGGTTGGCTTAG
GCATACGAAGTTCATTCCCAGT
Found at i:19942032 original size:26 final size:26
Alignment explanation
Indices: 19941996--19942045 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19941986 GACTTAGGCA
19941996 TACGAAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
19942022 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
19942046 ATCGAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:19942804 original size:12 final size:12
Alignment explanation
Indices: 19942787--19942817 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
19942777 ACCAAGGGTT
19942787 TCGGCAGTAGGA
1 TCGGCAGTAGGA
19942799 TCGGCAGTAGGA
1 TCGGCAGTAGGA
19942811 TCGGCAG
1 TCGGCAG
19942818 CATGCAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.19, G:0.42, T:0.16
Consensus pattern (12 bp):
TCGGCAGTAGGA
Found at i:19943847 original size:26 final size:26
Alignment explanation
Indices: 19943811--19943863 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19943801 GTTGACTTAG
19943811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19943837 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19943863 G
1 G
19943864 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19944272 original size:904 final size:901
Alignment explanation
Indices: 19939296--19945381 Score: 7609
Period size: 893 Copynumber: 6.8 Consensus size: 901
19939286 CGCCCCCTCA
* * * * *
19939296 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTGAGCAAACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
19939361 TCTAAAATCAGACCGAACCGAGGGTTGCGGCAGCACATGC-GTGGCTCAGGCATGTGCTGGTGCC
66 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTG-GGCTCGGGCATGTGCTGGTGCC
* * * * *
19939425 GTATTTTTCATT-GCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
130 GCATTTTTC-TTCGCCGGGGCACCATCGCCAGAGCATCATCGCAGAACCTGACCGACGGCATTGG
** * * * *
19939489 GGTTTTGACAATCGGGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
194 GGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * * *
19939554 GCACTTATATTGGCCCCCTTTCCCTCATCAAAGCTCTAGAACTCAAACCCCCTTAAAGAGCATTT
259 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * * * *
19939619 GAGATTTTACAGGTTTGCCGCTAATTGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAAT
324 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * *
19939684 GGCCGCAAAATCTTGTACACTTCGAGTATTTAGCTGAATCTTTTTGTGCATGCAAACAAAAATAC
389 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
19939749 AAGGATCACGTCTACCAACTTT-GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAAC
454 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAAC
* * *
19939813 CTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAATTTCACGTGA
519 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * * *
19939878 ACGCTTAAGGGACCAGTGTATGAATTTACATGCCATAAAAATGCCATTGGCATGTAGAAATATGA
584 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
* * **
19939943 AGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTTG
649 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
19940008 GCGTAGAGC-CCGCCCG--C-CCC-CTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCC
714 GCGTAGTGCGCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * ** * * * * *
19940068 TAGTCTAATATCAGACCGGACCT-AGGGTTGCGGTAGCAAGACCGACAACACGTAGAGGGGGACC
779 CAGTCTAAGATCAGACAGGA-CTGAGGGTTGCACTAGCAGGATCGACAGCACATAGAGTGGGACC
* * * * * *
19940132 TGGCCGATCCCCGGCTTGC-CATCCTGCCCCTCTGGTCGGCTGAGCGCTCGCACGCTCG
843 CGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
* **
19940190 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACAAAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** * * *
19940255 TCTAAGATCAAATCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCG
66 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * *
19940320 CATTTTTCTTCAG-CGGGACGCCATCACCGGAGCATCGTCGAAGAACCTGACCTG-CGGCATTGG
131 CATTTTTCTTC-GCCGGGGCACCATCGCCAGAGCATCATCGCAGAACCTGACC-GACGGCATTGG
* * *
19940383 GGTTCTGGCGATCGGGGGGGCCGGGGGGGGTGTACGCACATGATATGCGATGGGTGCTGGTACTT
194 GGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
19940448 GGCCCCTAAATTGGCCCCCTATCCCTCA-CAAACCTCGAGAACTCTCACCCCCTTAAAGAGCATT
258 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
19940512 TCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAAATAGGGACACTTTTTTCAAA
323 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
19940577 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATGTTTTTCGTGCATGCCAACAAAAAT
388 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAAT
* * *
19940641 ACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGA
452 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
* * * * *
19940706 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCCTGACACTTCACGT
517 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
19940771 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGGTAATGGCACGTAGAAATAT
582 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* * * * *
19940836 GGAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGACTTGCGCATCCCGTCTCTTTGGC
647 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
*
19940901 CGGCGCAGTGC-CCGCCCGCTCGCACACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
712 CGGCGTAGTGCGCCGCCCGC-C-CAC-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** ** * * *
19940965 CATTCCCAGTCTAAGAT-TGAC-GAACTGAGGGTTGTGGC-AATAGGATTGACAGCACGTAGAGG
773 CATTCCCAGTCTAAGATCAGACAGGACTGAGGGTTG-CACTAGCAGGATCGACAGCACATAGAGT
* * * *
19941027 GGGACCTGGCCGATCCCCGGCTTGCGCAT-CTCGCACCTCTGGCCGGCTGAGCACCCGCACGCTC
837 GGGACCCGACCGATCCCCGACTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
19941091 G
901 G
* * * *
19941092 TTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATATGGTGTTCATTCCTAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
19941156 TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGGCA
66 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * *
19941221 CATTTTTCTTCACTGGGGCACCATCGTC-GAAGCATCAACGGAGAACCTGACCGACGGCATTAGG
131 CATTTTTCTTCGCCGGGGCACCATCGCCAG-AGCATCATCGCAGAACCTGACCGACGGCATTGGG
** * *
19941285 GTTCCAACGATCGGGGGGG-C-AGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG
195 GTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
19941348 CCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
260 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
19941413 AGATTCTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
325 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
19941478 GTTACAAAATCTTGTACACTTCAAGTTCTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACA
390 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
*
19941543 AGG-TCA-----ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
455 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACC
* * *
19941602 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGAGAA
520 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
19941667 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
585 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
* * *
19941732 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGTCGG
650 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
19941797 CGTAGT---------GCCCACCCGCTCGTTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCT
715 CGTAGTGCGCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * * * * *
19941853 AGTCTAAGATTGGACCGGACCGAGGGTTACGAC-AGCAAGATC-AGCAACACATAGAGTGGGACC
780 AGTCTAAGATCAGACAGGACTGAGGGTTGC-ACTAGCAGGATCGA-CAGCACATAGAGTGGGACC
** * * * * *
19941916 CGGTCGATCCCC-AGCTTGCGCATCCCGCCCCTCTGGACGACTGAGCACCCGTACACTCG
843 CGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
* * *
19941975 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCGTACGAAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
*** * ** *
19942040 TCTAAGATC-GAATTGACCGACGGTTGTGATAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCG
66 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
19942104 CATTTTTCTTCCCCGGGGCACCATCACCGAAGCATCGCCGAGCATCGTCGGAGAACCTAACCGGC
131 CATTTTTCTTCGCCGGGGCACCATCGCC--AG-A--G-C-ATCATCG-C--AGAACCTGACCGAC
* * * * * * * *
19942169 GACATTGGGGTTTCGACGATC-GGGGGGCC-GGGGGGTGTACACCCATGTTGTGTGATGGGTGCT
186 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
19942232 GGTACTTGGCCCCTATATTGGCCCCCTATCCCTCA-CAAACCTTGAGAACTCTCACCCCCTTAAA
251 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
19942296 GAGCATTTGAGATTTTACAGGTGTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTT
316 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
19942361 TTTCAAATGGTCAGAAAATCTTGTACACTTGGAGTTTTTTGCTGAAGTTTTTTT-TGCATGCCAA
381 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
*
19942425 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAGAAA
445 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* ** * *
19942490 ATCCAGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTGTGGCCATGAAAC
510 ATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
19942555 ATCACGT-ACAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGCACGT
575 TTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * * * * *
19942619 AGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCAATAGATCCATGACTTGTGCATCCCGTC
639 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
19942684 TCT-TAGGCCTGCGTAGTGC-TCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATG
704 TCTCT-GGCCGGCGTAGTGCGCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** * * *
19942747 AAGTTCATTCCCTGTCTAAGATCAGACCA-GACCAAGGGTTTCGGCAGTAGGATCGGCAGTAGGA
768 GAGTTCATTCCCAGTCTAAGATCAGA-CAGGACTGAGGG-TT--GCACTAGCA--GG-A-T-CGA
* * * * *
19942811 TCGGCAGCATGCAAAGGGGGACCTGACCGATCCCC-AGCTTGCGCATCCCGCCCCTCTGGCCGGC
824 -CAGCA-CAT--AGAGTGGGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGGCCGGC
* * * *
19942875 TGAGCGCCTGAAGGCTCG
884 TGAGCACCCGCACGCTCG
* * *
19942893 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTATGGAGTTCATTCCTAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
*
19942958 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTG-CG
66 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** ** *
19943022 CATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCACCAG-AGAACCTGACCGGTGTTATTGAG
131 CATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATC-GCAGAACCTGACCGACGGCATTGGG
** * * *
19943086 GTTCCGGCGAT-AAGGGGGCCGGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTAGTACTTGG
195 GTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
19943150 CCCTTATATTGGCCCCCTATCCCTCA-CAAACCTCGAGAACTCTCACCCCCTTAAAGAGCATTTG
260 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
19943214 AGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATG
325 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
19943279 GTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
390 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
19943344 AGGATCATGTCTAGCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAATCCTGAACC
455 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACC
* * * *
19943409 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCATCTTGCCATTAAACTTCACGTGAA
520 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
19943474 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
585 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
* * * * *
19943539 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTTTCTTTGACCGA
650 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
19943604 CGTAGTGCCCGCCTGCCCGCCCACCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATT
715 CGTAGTG--CGCC-GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
19943669 CCCAGTCTAATACCAGACAGGATTGAGGGTTGCACTAGCAGGATCGACAGCACATAG-GTAGGAC
777 CCCAGTCTAAGATCAGACAGGACTGAGGGTTGCACTAGCAGGATCGACAGCACATAGAGTGGGAC
* * *
19943733 CCGACTGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCACTCGCACGCTCG
842 CCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
*
19943793 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * ** *
19943858 TCTAAGATTGGACTGGACTGAGGGTTGTGACAGCACATGCTGGGCTAGGGCATGTATTGTTGCCG
66 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * *
19943923 CATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCATCGCAAAACATGACCGACGGCATTGGGG
131 CATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATCGCAGAACCTGACCGACGGCATTGGGG
*
19943988 TTCCGGCGATCGGGGGGGCCGGGGGGGTTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
196 TTCCGGCGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
19944053 CCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
260 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
19944118 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGGACACTTTTTTCAAATG
325 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
19944183 GTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCTTGCCAACAAAAATACA
390 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
** * * *
19944248 AGGATCACGTCTACCAAGTTTGGGGTGAAAACTCTTTCCGAAAAAACTTTAAATAAT-CTCGAAC
455 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAAC
* *
19944312 CGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
519 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
19944377 AGGCTTAAGGGACCATTGTATAAATTTACAAGCCGTAAAAATGGCATTGGCACATAGAAATATAA
584 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
* * *
19944442 AGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGGCG
649 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * **
19944507 GCATAGTGCCCGCCCACCCGCCCGCCCGTTCGTTTCGTCGGTTGTTTTAGGCATACGGAGTTCAT
714 GCGTAGTG--CG-CCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
19944572 TCCCAATCTAAGATCAGACTGGACCGAGGGTTG---T-----G---G-CAGCACACAGAG-GGTG
776 TCCCAGTCTAAGATCAGACAGGACTGAGGGTTGCACTAGCAGGATCGACAGCACATAGAGTGG-G
* * * * * *
19944624 ACCCGACCGATCCCTGGCTTGCGCAT-CTCGCCCCTCTGGCCAGCTGAGCGCCCGCACACTTG
840 ACCCGACCGATCCCCGACTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
* * ** *
19944686 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCGTAGTCTAAGAATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
19944751 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCGCGAGCATGTGCTGGTGCCG
66 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * *
19944816 TATTTTTCTT--------CA-C-T-G---GAGCATCGTCGGAGAACTTGACTGATGGCATTGGGG
131 CATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATCGCAGAACCTGACCGACGGCATTGGGG
* *
19944867 CTCCGGTGAT---------C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
196 TTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
19944922 CCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCTTTAAAAAGCATTTGA
261 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
19944987 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTCTTTCAAATGC
326 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
19945052 TCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAATACAA
391 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* *
19945117 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAGCTTGAACCG
456 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCG
* ** * *
19945182 --TAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTAGCCATGAAACTTCACGTGAAG
521 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
19945245 GCTTAAGGGACCATTGTGTGAATTTACGAGCCATAAAAATGGCATTGGCGGAC--AGAAATATAA
586 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC--ACGTAGAAATATGA
* * * *
19945308 AGATTTGCCTAAACCCACATACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTAGCCG
649 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
19945373 GCGCAGTGC
714 GCGTAGTGC
19945382 CCACCCGTCC
Statistics
Matches: 4559, Mismatches: 534, Indels: 228
0.86 0.10 0.04
Matches are distributed among these distances:
864 1 0.00
866 177 0.04
868 277 0.06
869 7 0.00
870 1 0.00
879 38 0.01
881 51 0.01
882 6 0.00
883 157 0.03
884 63 0.01
885 4 0.00
886 2 0.00
888 1 0.00
889 1 0.00
890 5 0.00
892 168 0.04
893 515 0.11
894 347 0.08
895 288 0.06
896 1 0.00
897 2 0.00
898 296 0.06
899 157 0.03
900 179 0.04
901 296 0.06
902 57 0.01
903 110 0.02
904 478 0.10
905 4 0.00
906 64 0.01
907 4 0.00
908 44 0.01
909 456 0.10
910 9 0.00
911 6 0.00
912 8 0.00
913 67 0.01
915 5 0.00
916 5 0.00
918 156 0.03
919 46 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATCGCAGAACCTGACCGACGGCATTGGGG
TTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCG
CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCGCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACAGGACTGAGGGTTGCACTAGCAGGATCGACAGCACATAGAGTGGGACCCGA
CCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
Found at i:19944736 original size:26 final size:26
Alignment explanation
Indices: 19944706--19944757 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19944696 TGACTTAGGC
**
19944706 ATACGAAGTTCATTCGTAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
*
19944732 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
19944758 TCGGACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:19946240 original size:26 final size:26
Alignment explanation
Indices: 19946210--19946261 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19946200 TCACTTAGGC
*
19946210 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
19946236 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
19946262 TCGAATCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:19947139 original size:26 final size:26
Alignment explanation
Indices: 19947103--19947155 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19947093 GTTGACTTAG
19947103 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19947129 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19947155 G
1 G
19947156 ATCGAACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19947549 original size:884 final size:885
Alignment explanation
Indices: 19945503--19947860 Score: 3293
Period size: 884 Copynumber: 2.6 Consensus size: 885
19945493 TAAGGGGGCC
* * *
19945503 GGGGGGTGTGTGCACATGATGTGCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCC
*
19945568 CTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCA
*
19945633 GTAGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
130 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
19945698 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTG
195 GAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
* ** * * *
19945763 CGATCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTG
259 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCG-TAAAAGTTTCAAAAATCATG
* * *
19945828 -AAAATAGAAAATGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
323 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGA
* *
19945892 ATTTTCAAGCCATTAAAATGGCATTGGCACGTA-AAATTATGAAGATGTGCCTAAACCCACCTAC
388 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA-TATGAAGATGTGCCTAAACCCACCTAC
* *
19945956 CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCGGGCA-TAGTGCCCACCCGCCCGC
452 CACCCTATTGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGG-AGTAGTG----CCCGCCCGC
* * * * *
19946020 CCGTCCGCTCGTTTTGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAGGATCAGACCG
512 CCGT----TCGTTTCGTCGGTTGGCTTAGGCATA-AAAGTTCATTCCCAGTCTAAGATCGGACCG
** ** * *
19946085 GACTGAGGGTCACGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTAT
572 GACCAAGGGTCACAATAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCCGCTTAC
*
19946150 GCATCCCACCCCTCTGTCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACG
637 GCATCCCACCCCTCTGTCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACG
19946215 GAGTTCATTCCCAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGT
702 GAGTTCATTCCCAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGT
* * * *
19946280 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATC
767 TGCGACAGCACATGCTAGGCTCGAGCATATGCTGGTGCCGCATTTTTCCTCACCGAGGCACCAT-
* * *
19946345 ACCGGAGCATCACCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGTCAG
831 -CC-G-G----ACCGGAGAACCTAACCGACGGCATAGGGATTCCGACGATCAGGGGGGTCAG
* **
19946407 GGGGGGTGTGCGCACATGATTTATGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTACTTGGCCCTTATA-TTGCCCCCTATCC
* ** *
19946472 CTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGGTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCA
*
19946537 GTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
130 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
** *
19946602 GAG-TTGCAGCTGAATTTTTT-TGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
195 GAGTTTTTAGCTGAATTTTTTATG--CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
*** *
19946665 GGGGCCAAAACTCCACCCGAAAAAATTTTAAAATATCCCGAACCGTAAAAGTTTCAAAAATCATG
258 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAGTTTCAAAAATCATG
* * * * *
19946730 AAAAATAGAAAACGGGTCGTCTCGCCATGAAACTTCACATGAAGGCTTAAGGGACCATCGTATGA
323 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGA
* * *
19946795 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATTAAGATGTGCCTAAACCCACCTGCC
388 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * ** * **
19946860 ACCATATTGATCAACGGCTTGCGCATCCCATCTCTTTGGCCGTTGTAGTGCCCGCCCGCCCGTTC
453 ACCCTATTGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGTTC
*
19946925 GTTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGT
518 GTTTCGTCGGTTGGCTTAGGCATA-AAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGT
** * * * *
19946990 TGCAATAGCAGGATTGGTAGCACGCAGAGGGGGACCCTGCT-GATCCCCCGCTTGCGCATCCCGC
582 CACAATAGCAGGATCGGTAGCACGCAGAGGGGGACCC-GATCGATCCCCCGCTTACGCATCCCAC
* * * *
19947054 CCTTCTAG-CCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
646 CCCTCT-GTCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCAT
* * *
19947118 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA-CTAGACCGAGGGTTGCGGCA
710 TCCCAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATCGAATC-AGACCGAGGGTTGCGACA
* * * * *
19947182 GCACATGCTAGGCTTGAGCTTATGCTTGTGCCGCATTTTTCCTCATCGGGGCACCAT-C-G-CCG
774 GCACATGCTAGGCTCGAGCATATGCTGGTGCCGCATTTTTCCTCACCGAGGCACCATCCGGACCG
* *
19947244 GAGAACCTGACCGACGGCATAGGGATTCCGGA-GATCGGGGGGGTC-G
839 GAGAACCTAACCGACGGCATAGGGATTCC-GACGATCAGGGGGGTCAG
* * * *
19947290 GGTGGGGTGTGCGCACATGATCTGCAATGGGTTCTGGTACTTGGCCTTTATATTGAACCCCTATC
1 GG-GGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTACTTGGCCCTTATATTG-CCCCCTATC
*
19947355 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCC
64 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCC
* *
19947420 AGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
129 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
19947485 TGAGTTTTTAGCTGAATTTTTTATGCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
194 CGAGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
** * ** * * *
19947550 GGGCTGAAACTCCTTTTGAAAAAATTAAAAAAAAACTTCGAACCATAAAAAGTTTCAAAAATCAT
259 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC-CCGAACCGT-AAAAGTTTCAAAAATCAT
*
19947615 GAAAAATAGAAAACGACTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATG
322 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATG
*
19947680 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
387 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
19947745 CACCCTATTGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGGAGTAGTGCCCGCCCGCCCGCT
452 CACCCTATTGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGTT
* * *
19947810 CATTTCGTCGGTTGGATTAGGCATACAAAGTTCATTCCCAATCTAAGATCG
517 CGTTTCGTCGGTTGGCTTAGGCATA-AAAGTTCATTCCCAGTCTAAGATCG
19947861 ACAGCATGCA
Statistics
Matches: 1294, Mismatches: 144, Indels: 50
0.87 0.10 0.03
Matches are distributed among these distances:
883 6 0.00
884 280 0.22
885 24 0.02
886 242 0.19
889 1 0.00
892 1 0.00
894 1 0.00
895 273 0.21
896 3 0.00
899 13 0.01
901 2 0.00
902 24 0.02
903 236 0.18
904 186 0.14
905 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (885 bp):
GGGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
GCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAGTTTCAAAAATCATGAAA
AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATTGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGTTCGTT
TCGTCGGTTGGCTTAGGCATAAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTCACA
ATAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCCGCTTACGCATCCCACCCCTC
TGTCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGAATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGACAGCACATG
CTAGGCTCGAGCATATGCTGGTGCCGCATTTTTCCTCACCGAGGCACCATCCGGACCGGAGAACC
TAACCGACGGCATAGGGATTCCGACGATCAGGGGGGTCAG
Found at i:19948649 original size:26 final size:26
Alignment explanation
Indices: 19948613--19948665 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19948603 GTTGACTTAG
19948613 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
19948639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
19948665 G
1 G
19948666 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:19951270 original size:26 final size:26
Alignment explanation
Indices: 19951240--19951292 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19951230 GTTGACTTAG
19951240 GCATACCGAATTCATTCACAGTCTAA
1 GCATACCGAATTCATTCACAGTCTAA
** * *
19951266 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACCGAATTCATTCACAGTCTAA
19951292 G
1 G
19951293 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACCGAATTCATTCACAGTCTAA
Found at i:19951644 original size:856 final size:854
Alignment explanation
Indices: 19947935--19957311 Score: 8771
Period size: 856 Copynumber: 10.7 Consensus size: 854
19947925 GCGCCCGCAC
* * * * ** * *
19947935 GATGTGCGATGGGTTCTAGTAATTGGCCTTTATATTGAACCCCTATCCCTCAACAAACCTCGGGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
19948000 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
19948065 TGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG--TTTAGCTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
19948128 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCCAA-TTTGGGGACAAAACTCCATC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTC
* * *
19948192 CGAAAAAATTTTAAAAAATCTCGAACCGT-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGG
260 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
19948256 TCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
19948321 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCATATCGATCAACG
390 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * ** *
19948386 GCTTGCGCATCCCATCTCTTTGGTCGGTGTAGTGCCCTCCCG---C-TTGCTCGTTTCGTCAGTT
455 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCGCTCGTTTCGTCGGTT
* * * ** * *
19948447 GGCTTAGGCATACGAAGTTCATTACCAGTCTAAGA-TCGAACTGGATCGAGGGTTGCAGTAGCAG
520 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCAGACCGAGGGTTGCAGCAGCAG
* * * * *
19948511 GATCGGTAGCACGCAGAGTGGGACCCTG-CCGATCCCTGGCTTGCGCATCCCGCCCTTCTGGTCG
584 GATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
19948575 GTTGAACGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAG
648 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* *
19948640 CATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCGACAGCACATGCCAGGC
713 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACAT-----GC
* * * * *
19948705 TCGAGGTTGTGCTTGTGCTGCATTTTTCTTCATCGGGGCACCATCGCTGGAGAACCTGACCGACG
773 T--A----G-GCTCG-G-AGCA-------TCACCGGAG-A-TA-C-CT---G-A-CTG---G-CG
* * * * *
19948770 GCATTGGGATTCCGGAGATCGGGGGGGCCGGGTGGGGTGTGCACACAT
809 GCATTGGGGTTCTGGCGATCGGGGGGG-CTGG-GGGGTGTGCGCACAT
* * * ** *
19948818 GATGTGCGATGGGTTCTGGAACTTGGCCTTTATATTGAACCCCTATCCCTCATCAACCCTCGAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
19948883 GCTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
19948948 TGAAATAGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACGCTTTGAGTTTTTAGCTGAA-T
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * * **
19949012 TTTTTATGCACGCCATCAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCATTTT
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
*
19949077 GAAAAAATTTTAAAAAA-CTCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
261 GAAAAAATTTTAAAAAATC-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
19949141 TCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
19949206 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTTTCGATCCACA
390 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
19949271 ACTTGCTCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCTCGCCCGCCAGCTCGTTTCGTC
455 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCCGCC-GCTCGTTTCGTC
* * *
19949336 GGTTGGATTAGGCGTACAGAGTTCATTCCCAGTCTAAGATT-GA-CA-A-C-A----T------G
516 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAG
* * * *
19949386 C---AT-------------AGGGGGACTCGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGC
581 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
19949435 CGGCTGAGCGCCCGTACGATCGTTTCATGGGTTGACCTAGGCATACGGAGTTGATTCCCAGTCTA
646 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
19949500 AGCATACGGAGTTCATTCCCAGTCAAAGATGGGACCAGACCGAGGGTTGCGGCAGCACACGAAGG
711 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT---GC-G---AC--A--
* * * *
19949565 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACAGGAGA-ACCTGA-TC
765 G--C--ACA--TGCT--AG--G----------C-TC--GG-AGCATCACCGGAGATACCTGACT-
* * * **
19949628 GGCGGCATTGGGGTTCCGGCAATCGAGGGTTC-GGGGGGTGTGCGCACAT
805 GGCGGCATTGGGGTTCTGGCGATCGGGGGGGCTGGGGGGTGTGCGCACAT
* * * *
19949677 GATGTGAGATGGGTGCTGTTACATGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
19949742 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCGATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
19949807 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAAAT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
** *
19949872 TTTTTGTGCATGCCAA-AAAAATACAAGGATCGTGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
19949936 GAAAAAAGTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGT
261 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
19950001 CGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
326 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
19950066 ATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACC-CACCTATCGATCCACG
391 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CCTATCGATCCACG
* * ** * * *
19950130 ACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCATCCGTTCGTTTCATCAGTT
455 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCGCTCGTTTCGTCGGTT
** * ** *
19950195 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTAGCAGCAGG
520 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGG
** ** * * * * *
19950260 ATCAACAGCACGCAGAGGGGGACCCGGTCGATACCTGGCTTGCGTATTCCGCCCCTCTGGGCGGC
585 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
** * * *
19950325 TGAGCGGTCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAGAT
650 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--
* * ** * * * * * * **
19950390 CAGATCGGA--TCAAGGGTTGCGACAGCACATGCTGGGCTTGG-GCATGTGCTCGTGCTGTATTT
713 CATA-CGGAGTTC-A---TT-C--C--CA-GT-CTAAGATCGGACCA-G-AC-CGAG-GGT-TGC
** ** ** ** * * *
19950452 TTCTTCACCGGGGC-ACCATCGTCGGAGCATCACCGGAGA-ACCTGACCGACGGTATTGGGGTTC
761 GACAGCA-C-ATGCTA--GGC-TCGGAGCATCACCGGAGATACCTGACTGGCGGCATTGGGGTTC
* * *
19950515 TGACAATCGGGGGGGCCGGGGGGGGTGTGCGCACAT
821 TGGCGATCGGGGGGG-C-TGGGGGGTGTGCGCACAT
* * * *
19950551 GATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTAGCCCCCCATCTCTCATCAAACCTCGAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
19950616 ACTCACACCCCCTTAAAGAGCATTCGAGATTTTAGAGTTTTGCTGCCAGCAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
19950681 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
19950746 TTTTTGTGCATGCCAACAAAAATTCCAGGATCACGGCTACCAAGTTTGGGGCCAAAAATCCTTCC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
19950811 AAAAAAATTGTAAAAAATCCCGAGCCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
261 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
19950876 CGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAA
326 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
19950941 ATGGCATTGGCATGCAAAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
391 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
19951006 CTTGCACATCCCGTCTTTCTGGTCGGCGTAGTGCCCGCCCGCCTGCCTGCTCGCTTGTTTCATCG
456 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CC-GC-CGCTCGTTTCGTCG
* * * * * *
19951071 GTTGGCTTAGGCATATGGAATTCATTCCCAGTCTAAGATTGGATCAGACCGAGTGTTGTAGCAGC
517 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGC
* ** * *
19951136 AGGAAT-GGCAGCACGTAG-GGCATGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGG
582 AGG-ATCGGCAGCACGCAGAGG-GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
** * * * * *
19951199 CCGATTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAATTCATTCACAGTCT
645 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
19951264 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGACAGCACATGCTA
710 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTA
*
19951329 GGC-CGGAGCATCACCGGAGA-ACCTGACTGGCGGCATTGGGGTTCTGGTGATCGGGGGGGCTGG
775 GGCTCGGAGCATCACCGGAGATACCTGACTGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCTGG
*
19951392 GGGGTGTGCGTACAT
840 GGGGTGTGCGCACAT
* * *
19951407 GATGTGCGATGGGTGCTGGTACTTTGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTGGAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
19951472 AATCACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
19951537 TAAAATGGGGCCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* **
19951602 TTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTATGGCCAAAACTCCTTCC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
19951667 GAAAAAATATTAAAAAATCCCGAACCGTACAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGT
261 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
19951732 CATCTTGCCATTG-AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAA
326 CGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
19951795 AATTGGCATTGGC-TCGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
390 AA-TGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
19951859 CGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTACCCGCCCG---C-CCGCTTGTTTCGTCGG
453 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCGCTCGTTTCGTCGG
** * *
19951920 TTGGCTTAGGCATAC-GAGGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTG-TGACAG
518 TTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAG-CAG
** * * * *
19951983 CAGGATCGATAGCATGCAGAGGGGGACCCAACC-ATCCCCGACTTGTGCATCCCGCCCCTCTGGC
581 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
19952047 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
646 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
19952112 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATCGAGGGTTACGGCAACACATGCTG
711 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGACAGCACATGCTA
** * * * * * * * *
19952176 GGCTCGG-GCATGTGCTGGTGCCTTATTTTTCTTCACCGG-GGCATCATCGCCGGAGCATCACCG
775 GGCTCGGAGCAT-CACCGGAG----A---TACCTGACTGGCGGCAT--T-G--GG-G--T-TCTG
* * ** * * * *
19952239 GAGAACCTAACCGGCGGGATTGCGGTTTCGACAATCAGGGGGGC-CGAGGAG
823 GCG-A--T---CGGGGGGGCTG-GG----G-------GGTGTGCGC-A-CAT
* * **
19952290 GGTGTGCACACTTGATATGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGTACCCTATCCCTCA
1 GATGTG----C--G-------ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
19952355 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
53 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
19952420 CCATTAAAGTGTCTGAAATGGGGATATTTTTTTCAAATGGTCACAAAATCATGTACACTTC-ATG
118 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-G
* * * *
19952484 TTTTTAGCTGAATTTTTTTATGCATCCCAACAAAAATA-AATGGATCATGTCTACCAAGTTTGGA
182 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGG
* ** *
19952548 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTCTCAAAAATCATGAA
246 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
19952613 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCACTGTATGAAT
311 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
19952678 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
376 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * *
19952743 CCTATCGATCCATGACTTGCGCCTCTCGTCTCTCTGGCCGGCGTAATGCTCGGCCGCCCACCCGC
441 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CCGCC-CGC-CCCG-
* * *
19952808 CCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
502 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACC
* * * * * *
19952873 TAGGGTTGCGGCACCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCACAT
567 GAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * *
19952938 CCCGCCCCTCTGGACGGCTGAGTGCCCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGT
632 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * **** * **** ** * * * ** **
19953003 TCATTCCCAATCT-AGGAT-CGGACCGGACTGAGGGT-TGTG-GCAGCACATGCTGGGCTTGGGC
697 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGAC---CAGACCGAGGG-
* * * * * * *
19953064 ATTTGCTGGTGCCGCATTTTTCTTCGTCGAGGAACCATCGCCGGAACATCGCCAGAGA-ACCTGA
757 --TTGC--G-ACAGCA-----CAT-G-CTAGG---C-T---CGGAGCATCACCGGAGATACCTGA
* * * * * * *
19953128 CCGACGG-ATTGGGGTTCCGGCGGTCAGGGGGGCCGGGGGGGTGTGTGCACAT
803 CTGGCGGCATTGGGGTTCTGGCGATC-GGGGGGGCTGGGGGGTGTGCGCACAT
19953180 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
19953245 ACTCACACCCCCTTAAAGAGCATTTTAGATTTTATAGGTTCGCTGCCAGTAGCCATTAAAGTGTT
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
19953310 TGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGCGTTTTTAGCTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
19953375 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG---------CTTCC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * ** *
19953431 GAAAAAGTTTTAAAAAATCTCGAACCGCAGAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
261 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
19953496 CGTCTTGCCATGAAACTTCACGTGAAGGCTT--GGGACCATTGTATGAATTTACAAGCCATAAAA
326 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
19953559 ATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACTCTATCGATCCACGG
391 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
19953624 CTTGCGCATCCCGTC-CATTTGGCCGACGTAGTGCCCGCCCG-CTCGCCCGCTCGTTTCATCAGT
456 CTTGCGCATCCCGTCTC-TCTGGCCGGCGTAGTGCCCGCCCGCCCCG-CCGCTCGTTTCGTCGGT
* * * * * * * *
19953687 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACAAGACCTAGGGTTACAGTAGTAG
519 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAG
* * * * * *
19953752 GATCGACAGAACGCGGAGGGGGACCCGACCGATCCCCGACTTGTGCTTCCCGCCCCTCTGGCCGG
584 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
19953817 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
649 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
19953882 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT-GGTT
714 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG-C
** * * * * * * ** *
19953946 TC-GAGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGACACCATCGCCGGAGCTTAACTAGAGA
778 TCGGAGCAT-CAC-CG-G--AGA---TAC-CTGACTGG-CGGCATTG--GG-G-TT--CT-G-G-
*
19954010 ACCTGACTGACGGCATTGGGGTTCCGACGATTGGGGGGCAGGGGGTGTGCACACAT
824 --C-GA-T--CGG----GGGG----G-C---T-----G--GGGGGTGTGCGCACAT
* *
19954066 GATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
19954131 TCTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTG-C
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
19954195 TGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
19954260 TTTTTGTGCATGCCAACAAAAATA-AAGGATCACGCCTACCAAGTTTAGGGCCAAAACTCCTTCT
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
*** *
19954324 GAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG-GG
261 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
19954388 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA-CATTGAATGAATTTACAAGCCATAAAA
326 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
19954452 ATGGCAGTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
391 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
19954517 CTTGCGCATCCCATC-CT-TGGTC--CTTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCATCG
456 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCC-GCCGCTCGTTTCGTCG
* * * **
19954578 GTTGGCTTAGGTATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGC
517 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGC
** * * * * * * * * *
19954643 AGGATCAACAACATGTAGAGGGGGACTCGCCCGATCCCTGGCTTGTGCATCCCTCCCCTCTAGCC
582 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
19954708 GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAA
647 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19954773 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGC-AGCAACACATGCTGG
712 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCACATGCTAG
** * * * *
19954837 GCTC-GAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
776 GCTCGGAGCAT-CACCGGAG--ATA-----C--C-T----G-A-C-T-GGC-G-GCATTG--GG-
* * * ** * ** *
19954901 GCATCGCTGGAGAACCTGACCAGCGGCAT-TAGGGT-TTCG-ACGAT
817 G--T-TCTGGCG-ATC-G--GGGGGGC-TGGGGGGTGTGCGCAC-AT
* * * ** *** * **
19954945 CAGGGGGCCGGGGGGCTGTCCGCACATGATGTGGGATGGCTGCTGGTACTTGGCCCTTATATTGG
1 GA-TGTG-C-GATGG--GT--G--C-TG--GT-ACTTGGC-CCTTATA-TT------------GG
*
19955010 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGG
39 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
19955075 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAGATTT
104 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
19955140 TGTACACTTTGAGTTTTTGGCTG-ATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCT
169 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
19955204 ACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATGTTAAAAAATCTCAAACCGTAAAAAGTTTC
234 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * *
19955269 -AAAATCATG-AAAA-AGAAAACGAGTTGTCTTGCCACGAAACTTCACGTGAAGGCTTAATGGAC
299 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * ***
19955331 CATTGTTTGAATTTACAAGCCATAAAAATGGCACTGGCACATAGAAATATGAAGATGTGCCTAAA
364 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
*
19955396 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGC
429 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * *
19955461 TCG---C-CCGCTCGTTTCGTCGATTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG
494 CCGCCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG
** * * * * * * ** *
19955522 ACTGGATCGAGGATTCCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACAAGACCGATCCTCGGC
559 ACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * *
19955587 TTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCTTGGGTTGACTTAGGCA
624 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
19955652 TACGGAGTTCATTGCCAGTCTAAG-AT-CGGACCAGATTGAGGGTTGCGGCAG-C--ACATGCTG
689 TACGGAGTTCATTCCCAGTCTAAGCATACGG---AG-TTCA---TT-C-CCAGTCTAAGAT-C-G
* * * * ** * * * *
19955712 GGCTCAGGCATGTGCTGG-TGCCG-CATTTTTCGTCATCGGGGCACCAACGC-CAGAGCTTCACC
743 GAC-CAGAC-CGAG--GGTTG-CGACA------G-CA-C-ATG---CTAGGCTCGGAGCATCACC
* * * * * **
19955774 GGAGA-AGCTGACCGGTGGCATTAGGGTTCCGGCGAATCGGGGGGCCGGGAGGGGGGTGTGCGCA
791 GGAGATACCTGACTGGCGGCATTGGGGTTCTGGCG-ATC-GGGGG--GGCTGGGGGGTGTGCGCA
19955838 CAT
852 CAT
* * *
19955841 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACTTCAAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
19955906 ACTCACACCGCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
19955971 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
19956036 TTTTTGTGCATACCAA-AAAAATACAAGGATTAAGTCTACCAAGTTT-GGGCCAAAAATCCTTCC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
19956099 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGGGT
261 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
19956164 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
326 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
19956229 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCAACCG
391 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* **
19956294 CTTGCGCCTCCCGTCTCTCTGGCCGAAGTAGTGCCTGCGCGCC-CGCCCGCCTGCTCGTTTCGTC
456 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC--CGC-CCGC-CCCGCC-GCTCGTTTCGTC
* * ** * *
19956358 GGTTCGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAG
516 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAG
* * * * *
19956422 TAGGATCGGTAGCATGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGC
581 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
19956487 CGACTCAGTGCCCGTACGCTCGTTTCATGGGTTGAC-TAGGCATACGGAGTTCATTCCTAGTCTA
646 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
19956551 AGCGTACGTAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGG
711 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAG
* * * * *
19956616 GCTCGG-GCATGTACTGGTGCTACATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCTCCGGG
776 GCTCGGAGCAT-CAC-CG-G--AGA-------T-ACC--TG-A-C-T-GGC-G-GCAT-T--GGG
* *
19956680 GAACCTAACCGTCGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGGTGTGCGCACAT
817 G----T-----T---C--T---G-----GCGATCGGGGGGGCTGGGGGGTGTGCGCACAT
* *
19956740 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
19956805 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * *
19956870 TGAAATGGGGACACTTTTTTCAAATGGTCACAAGATTTTGTACACTTTGAGTTTTTGGCTGATTT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
19956935 TTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
19957000 GAAAAAAATGTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
261 G-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * * *
19957065 TTGTCTTGCCACGAAACTTCACGTGAAGGCTTAATGGACCATTGTTTGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *** *
19957130 AATGGCACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACA
390 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
19957195 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-ACAC-CCGCTCCTTTCGTCGGAT
455 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCGCTCGTTTCGTCGGTT
* **
19957256 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTAGATTGAGGGTTGC
520 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGC
19957312 GACAGGACAT
Statistics
Matches: 7056, Mismatches: 974, Indels: 916
0.79 0.11 0.10
Matches are distributed among these distances:
841 5 0.00
842 3 0.00
844 1 0.00
845 1 0.00
846 3 0.00
847 152 0.02
848 93 0.01
849 4 0.00
850 2 0.00
851 7 0.00
852 2 0.00
853 3 0.00
855 59 0.01
856 483 0.07
857 13 0.00
858 54 0.01
859 454 0.06
860 23 0.00
861 10 0.00
862 353 0.05
863 10 0.00
864 17 0.00
865 17 0.00
866 123 0.02
867 15 0.00
868 149 0.02
869 185 0.03
870 42 0.01
871 220 0.03
872 8 0.00
873 12 0.00
874 223 0.03
875 267 0.04
876 14 0.00
877 255 0.04
878 140 0.02
879 217 0.03
880 8 0.00
881 7 0.00
882 13 0.00
883 186 0.03
884 106 0.02
885 285 0.04
886 236 0.03
887 6 0.00
888 9 0.00
889 24 0.00
890 9 0.00
891 19 0.00
892 41 0.01
893 468 0.07
894 48 0.01
895 55 0.01
896 438 0.06
897 17 0.00
898 11 0.00
899 221 0.03
900 35 0.00
901 32 0.00
902 401 0.06
903 22 0.00
904 122 0.02
905 136 0.02
906 226 0.03
907 131 0.02
908 17 0.00
909 7 0.00
910 15 0.00
911 10 0.00
912 6 0.00
914 1 0.00
915 1 0.00
916 2 0.00
917 9 0.00
918 7 0.00
919 2 0.00
920 2 0.00
921 2 0.00
922 6 0.00
923 8 0.00
925 7 0.00
926 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (854 bp):
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGGA
TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCG
GAGCATCACCGGAGATACCTGACTGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCTGGGGGGTG
TGCGCACAT
Found at i:19952123 original size:26 final size:26
Alignment explanation
Indices: 19952087--19952139 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19952077 GTTGACTTAG
19952087 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19952113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19952139 G
1 G
19952140 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19953890 original size:26 final size:26
Alignment explanation
Indices: 19953854--19953906 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19953844 GTTGACTTAG
*
19953854 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19953880 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19953906 G
1 G
19953907 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19954716 original size:893 final size:898
Alignment explanation
Indices: 19952992--19957312 Score: 5594
Period size: 893 Copynumber: 4.9 Consensus size: 898
19952982 GTTGACTTAG
* * * * *
19952992 GCATACGGAGTTCATTCCCAATCTAGGATCGGACCGGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * * * * *
19953057 CTTGGGCATTTGCTGGTGCCGCATTTTTCTTCGTCGAGGAACCATCGCCGGAACATCGCCAGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
19953122 ACCTGACCGACGG-ATTGGGGTTCCGGCGGTCAGGGGGGCCGGGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
19953186 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
19953251 ACCCCCTTAAAGAGCATTTTAGATTTTATAGGTTCGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19953316 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGCGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
19953381 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG--------GCTTCCGAAAAAG
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAA
* * ** *
19953438 TTTTAAAAAATCTCGAACCGCAGAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
19953503 CCATGAAACTTCACGTGAAGGCTT--GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
19953566 TGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGC
586 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
19953631 ATCCCGTC-CATTTGGCCG-ACGTAG-TGCCCGCCCGCTCGCCCGCTCGTTTCATCAGTTGGCTT
651 ATCCCGTCTC-TCTGGCCGTA-GT-GCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * *
19953693 AGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACAAGACCTAGGGTTACAGTAGTAGGATCGA
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
19953758 CAGAACGCGGAGGGGGACCCGACCGATCCCCGACTTGTGCTTCCCGCCCCTCTGGCCGGCTGAGC
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
19953823 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAA
*
19953880 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * **
19953945 TTCGAGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGACACCATCGCCGGAGCTTAACTAGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * *
19954010 ACCTGACTGACGGCATTGGGGTTCCGACGAT-TGGGGGG-C-AGGGGGTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
19954072 CGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGATCTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19954137 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTG-CTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
19954201 GGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19954266 TGCATGCCAACAAAAATA-AAGGATCACGCCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAA
** *
19954330 ATTTTAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG-GGCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19954394 GCCATGAAACTTCACGTGAAGGCTTAAGGGA-CATTGAATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
19954458 GTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
585 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
19954523 CATCCCATC-CT-TGGTCCTTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTT
650 CATCCCGTCTCTCTGG-CCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
19954586 AGGTATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCAA
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * * * *
19954651 CAACATGTAGAGGGGGACTCGCCCGATCCCTGGCTTGTGCATCCCTCCCCTCTAGCCGACTGAGC
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
19954716 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
* * *
19954773 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
19954838 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGC
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCAT--------C
* * * *
19954903 ATCGCTGGAGAACCTGACC-AGCGGCATTAGGGTTTCGACGATCA-GGGGGCCGGGGGGCTGTCC
123 A-C-C-GGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGC
* *
19954966 GCACATGATGTGGGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
184 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
19955031 TCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
249 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
19955096 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAGATTTTGTACACTTTGAGTTTTTGGC
314 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
19955161 TG-ATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACT
379 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACT
* * * *
19955225 CCTTCCGAAAAAATGTTAAAAAATCTCAAACCGTAAAAAGTTTC-AAAATCATG-AAAA-AGAAA
443 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * * *
19955287 ACGAGTTGTCTTGCCACGAAACTTCACGTGAAGGCTTAATGGACCATTGTTTGAATTTACAAGCC
508 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* **
19955352 ATAAAAATGGCACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
573 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* ** * * *
19955417 CCACGGCTTGCGCATCCCGTCTCTCTGGCCG--GCGTAG--TGCTCGCTCGCCCGCTCGTTTCGT
638 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * ** * * * *
19955478 CGATTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGATCGAGGATTCCGGTA
703 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
** ** * *
19955543 GCAGGATCGGTAGCACGCAGAGGGGGACAAGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGG
768 GCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
19955608 CCGGTTGAGCGCCCGTACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAG----TT-CA---T-
833 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTA
19955664 -
898 A
**
19955664 ---T-----G-------CCAGTCTAAGATCGGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19955714 CTC-AGGCATGTGCTGGTGCCGCATTTTTCGTCATCGGGGCACCAACGCCAGAGCTTCACCGGAG
66 CTCGA-GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAG
* ** * *
19955778 AAGCTGACCGGTGGCATTAGGGTTCCGGCGAATC-GGGGGGCCGGGAGGGGGGTGTGCGCACATG
130 AACCTGACCGACGGCATTGGGGTTCCGACG-ATCAGGGGGGCC--G-GGGGGGTGTGCGCACATG
* * *
19955842 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACTTCAAGAA
191 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
19955907 CTCACACCGCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
256 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
19955972 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
321 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
19956037 TTTTGTGCATACCAA-AAAAATACAAGGATTAAGTCTACCAAGTTTGGGCCAAAAATCCTTCCGA
386 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGA
* * *
19956101 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGGGTCG
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
19956166 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19956231 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCAACCGCT
581 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
19956296 TGCGCCTCCCGTCTCTCTGGCCGAAGTAGTGCCTGCGCGCCCGCCCGCCTGCTCGTTTCGTCGGT
646 TGCGCATCCCGTCTCTCTGGCC---GTAGTGCC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* ** * *
19956361 TCGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGTAG
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
** * * * *
19956425 GATCGGTAGCATGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGA
772 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
19956490 CTCAGTGCCCGTACGCTCGTTTCATGGGTTGAC-TAGGCATACGGAGTTCATTCCTAGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAA
* * *
19956552 GCGTACGTAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
19956617 CTCGGGCATGTACTGGTGCTACATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCTCCGGGGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
* *
19956682 ACCTAACCGTCGGCATTGGGGTTCC-AGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
19956745 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
19956810 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
19956875 TGGGGACACTTTTTTCAAATGGTCACAAGATTTTGTACACTTTGAGTTTTTGGCTGATTTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
19956940 GTGCATGCCAATAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCG-AAA
* * * * *
19957005 AAATGTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
19957070 TTGCCACGAAACTTCACGTGAAGGCTTAATGGACCATTGTTTGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
19957135 CACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
583 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * * *
19957200 CGCATCCCGTCTCTCTGGCCG--GCGTAG--TGCCCGCACACCCGCTCCTTTCGTCGGATGGCTT
648 CGCATCCCGTCTCTCTGGCCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * **
19957261 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTAGATTGAGGGTTGCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
19957313 ACAGGACATG
Statistics
Matches: 3003, Mismatches: 341, Indels: 171
0.85 0.10 0.05
Matches are distributed among these distances:
865 28 0.01
866 11 0.00
867 1 0.00
868 52 0.02
869 228 0.08
870 22 0.01
871 154 0.05
874 1 0.00
875 1 0.00
876 92 0.03
877 14 0.00
878 122 0.04
879 45 0.01
881 2 0.00
882 1 0.00
883 2 0.00
884 20 0.01
885 88 0.03
886 135 0.04
887 1 0.00
888 128 0.04
889 15 0.00
891 5 0.00
892 37 0.01
893 463 0.15
894 51 0.02
895 29 0.01
896 4 0.00
897 2 0.00
898 2 0.00
899 216 0.07
900 28 0.01
901 18 0.01
902 380 0.13
903 120 0.04
904 44 0.01
905 42 0.01
906 267 0.09
907 129 0.04
908 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAA
Found at i:19954784 original size:26 final size:26
Alignment explanation
Indices: 19954747--19954799 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19954737 GTTGACTTAG
* *
19954747 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19954773 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19954799 G
1 G
19954800 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19954896 original size:11 final size:11
Alignment explanation
Indices: 19954880--19954912 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
19954870 GTCGGGGCAC
19954880 CATCGCCGGAG
1 CATCGCCGGAG
19954891 CATCGCCGGAG
1 CATCGCCGGAG
*
19954902 CATCGCTGGAG
1 CATCGCCGGAG
19954913 AACCTGACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.36, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:19956558 original size:26 final size:26
Alignment explanation
Indices: 19956529--19956578 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19956519 TGACTAGGCA
*
19956529 TACGGAGTTCATTCCTAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
*
19956555 TACGTAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19956579 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:19959564 original size:702 final size:703
Alignment explanation
Indices: 19958174--19959607 Score: 2171
Period size: 702 Copynumber: 2.0 Consensus size: 703
19958164 AAGCATACTT
* * ** ** *
19958174 AGTTCATTTCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGCCTAAGATCAGACCAGACCAACAGTTGCGATAGCACATGCTGGGCTCGGGCA
* * * * **
19958239 TGTGCTGGTGTCATATTTTTTTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCATATTTTTCTTCGCCAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACC
19958304 GACAACATTGGGGTTCCGACGATCGAGGGGGCCGGAGGGGGTGTGCGCACATGATGTGTGATGGG
131 GACAACATTGGGGTTCCGACGAT-------G-CGGAGGGGGTGTGCGCACATGATGTGTGATGGG
* *
19958369 TGCTGGTACTTGGCCTTTATATTGACCCCCTATCCCTCATCAATCCTCGAGAACTCACACCCCCT
188 TGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
19958434 GAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTTAAATGGGGACA
253 GAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACA
* *
19958499 CTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTCAATTATTTTGTGCATGCC
318 CTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTACCTCAATTATTTTGTACATGCC
*
19958564 AACAAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
383 AACAAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * *
19958629 AAATCTCGAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
448 AAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
19958694 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
513 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
19958759 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCAC
578 CAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCAC
* *
19958824 CTCTTTGGCCGACGTAGTCGCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
643 CTCTTTGGCCGACGTAGTCGCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * *
19958885 AGTTTATTCCTAGCCTAAGATCAGACCAGACCAACAGTTGCGATAGCACATGTTGGGCTCGGGCA
1 AGTTCATTCCCAGCCTAAGATCAGACCAGACCAACAGTTGCGATAGCACATGCTGGGCTCGGGCA
* * ***
19958950 TGTGCTGTTGCCGTATTTTTCTTCGCCAGGGCACCATCGTTGGAGCATCACCGGAGAACCTGACC
66 TGTGCTGGTGCCATATTTTTCTTCGCCAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACC
**
19959015 GACGGCATTGGGGTTCCGACGAT-C-G-GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
131 GACAACATTGGGGTTCCGACGATGCGGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
* *
19959077 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
196 CTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGC
*
19959142 ATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
261 ATTTGAGATGTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACAC-TTTTTC
* * * * * * *
19959207 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGATTTGTTTTTTACATGGCAACAAAA
325 AAATGGTCACAAAATCTTGCACACTTCGAGTTTTTACCTCAATTATTTTGTACATGCCAACAAAA
19959272 ATACAAGGA-CCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATC
390 ATACAAGGATCC-CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATC
*
19959336 TCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA-AAAATCGAGTCATCTTGCCATGAAACTT
453 TCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCATCTTGCCATGAAACTT
*
19959400 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAGATGGCATTGGCATGCATG
517 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-G
* * * ***
19959465 -AATATAAAGATGTGCCTAAACCCACTTACCACTCTATCGATCCATGGCTTGTGCATCCTGTCTC
581 AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCACCTC
* *
19959529 TTTGGCCGGCGTAGT-GCCTGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGG
646 TTTGGCCGACGTAGTCGCC-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
*
19959587 AGTTCATTCCCAGTCTAAGAT
1 AGTTCATTCCCAGCCTAAGAT
19959608 TGGATCAGAC
Statistics
Matches: 657, Mismatches: 60, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
700 155 0.24
701 121 0.18
702 250 0.38
703 1 0.00
711 130 0.20
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (703 bp):
AGTTCATTCCCAGCCTAAGATCAGACCAGACCAACAGTTGCGATAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCATATTTTTCTTCGCCAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACC
GACAACATTGGGGTTCCGACGATGCGGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
CTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGC
ATTTGAGATGTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTCA
AATGGTCACAAAATCTTGCACACTTCGAGTTTTTACCTCAATTATTTTGTACATGCCAACAAAAA
TACAAGGATCCCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
AACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCACCTCTTTGG
CCGACGTAGTCGCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
Found at i:19959769 original size:26 final size:26
Alignment explanation
Indices: 19959740--19959790 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19959730 TGACTTAGGG
*
19959740 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTCCATTCCCAGTCTAAGC
19959766 ATACGGAGTCCATTCCCAGTCTAAG
1 ATACGGAGTCCATTCCCAGTCTAAG
19959791 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTCCATTCCCAGTCTAAGC
Found at i:19960536 original size:26 final size:26
Alignment explanation
Indices: 19960500--19960552 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19960490 GTTGACTTAG
19960500 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19960526 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19960552 G
1 G
19960553 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19961437 original size:26 final size:26
Alignment explanation
Indices: 19961401--19961453 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19961391 GTTGACTTAG
*
19961401 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19961427 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19961453 G
1 G
19961454 ATAGGTCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19962333 original size:26 final size:26
Alignment explanation
Indices: 19962303--19962355 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19962293 GTTGACTTAG
19962303 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
*
19962329 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
19962355 G
1 G
19962356 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:19962924 original size:26 final size:26
Alignment explanation
Indices: 19962884--19962935 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19962874 TACTTGGCCC
*
19962884 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGATCATTCCAAGTCTAA
*
19962910 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCAAGTCTAA
19962936 AATCGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCAAGTCTAA
Found at i:19965022 original size:26 final size:26
Alignment explanation
Indices: 19964992--19965044 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19964982 GTTAACTTAG
19964992 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
* *
19965018 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
19965044 G
1 G
19965045 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:19965481 original size:896 final size:895
Alignment explanation
Indices: 19960209--19971179 Score: 12547
Period size: 903 Copynumber: 12.2 Consensus size: 895
19960199 AAATCTTGTT
* * * *
19960209 TGCAAAAATATGAAGATGTCCCTAATCCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
19960274 GTCTCTCTGGCCGGCGTCGTGCCTGCCCGCCCGCTCGTCCGCCCGCTCGACTCGTCAGTTGGCTT
66 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGT--------T----TCGTCGGTTGGCTT
* * ** * *
19960339 AGGCATACGGAGTTCATTCCTAATCTAAGATTGGACC-AGACCGAGGGTTGTGGCAGTAGGATCG
119 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAGGATCG
* * ** * *
19960403 GTAGCACGTA-AAGGGGGACCCGACCGATCCCCAGCTTGCTCATCCAGCCCCTCTGGCCGGCTGA
183 GTAGCACGCAGAA-GGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
19960467 GCGCCCGCACGCTCGTTTCTTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
247 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* ** * * *
19960532 GGAGTTCATTCCCAGTCTAAGATCGGACCAAATTGAGGGTTGCAGCATCACATGCTGGGCTCAGG
312 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * ** * *
19960597 CATATGCTGGTGCCACATTTTTCTTCGTCGGGGCAATATCGTCGGAGCATCGCCGAAGAACCTGA
377 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * * * *
19960662 CCGGCGGCATTGGAGATCCGACGATCAGGGGGCCGGGGGGGGTGTGCACACATGATGTGTGATGG
442 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-AGGGGGGTGTGCGCACATGATGTGCGATGG
*
19960727 GTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
506 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* *
19960792 TTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGAC
571 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
19960857 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTTTTTGTACATG
636 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** *
19960922 AGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT-
701 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
19960986 AAAAATCTCAAACTGCAAAAAGATTC-AAAATCGTGAAAAATAGAAAAAGAGTCGTCTTGCCATG
766 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
19961050 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGCCA
831 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
19961114 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
19961179 GTCTCTCTGGCCGACGTCGTGCCCGCCCGCCCACTCGTCCGCTCGTTTCGTCGGTTGGCTTCGGC
66 GTCTCTCTGGCCGGCGTAGTGCCCGCCCG------C--CCGCTCGTTTCGTCGGTTGGCTTAGGC
** * * * * * * *
19961244 ATACGGAGTTCATTCCCAGTCTAAGATTGGGCAGGATCGAGGGTTGCGGTAGTAGGATCGATAGC
123 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGC
* * * * * *
19961309 ACGAAGAGGGGGACCCAGCCGATCCCTGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGTGCCC
188 ACGCAGAAGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*** * * *
19961374 ATGCGCTTGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTT
253 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
19961439 CATTCCCAGTCTAAGATAGGTCCAAACCGAGGGTTACAGTAGCACATGCTGGGCT-GGGCATGTG
318 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
19961503 CTGGTGCCGTA-TTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGGTG
383 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCG
* * * *
19961567 GCATTGGGGTTCTGACGATCGGACGGGCCGGGGGGGTGTGCGCAGATGATGTGCGATGGGTGCTG
448 GCATTGGGGTTCCGACGATCGG-GGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
19961632 GTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCTTTAAAG
512 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
* * * *
19961697 AGCATGTGAGATGTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTT
577 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
19961762 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTT-TGCATGCCAAC
642 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAC
* *
19961826 AAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
706 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * *
19961891 TCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
771 TCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
19961956 TCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
836 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
19962016 TACAAAAATATGAAGATATGCCTAAACCCA-CTAACCACCTTATCGATCCACGACTTGCGCATCC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
19962080 CATCTCTTTGGTCGACGTAGTGCCCGTCCGCCTGCCCTCCCACTTGTTTCATCGGTTGGCTTAGG
65 CGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-G----CCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
19962145 CATATGGAGTTCATTCCCAATCTAAGATCAGACC-AGATCGAGGGATGCGGTAGTAGGATCGGCA
122 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * * * * ** * *
19962209 GCATGCAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCTTGCCTCTCTGGCCAGCTGAGCGC
186 GCACGCAGAAGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
19962274 CCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCATACGGAG
251 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
19962339 TTCATTTCCAGTCTAAGATCGGACCAAACCGAGGGTTACGGCAGCACATGCAGGGCT-GGGCATG
316 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * * *
19962403 TGTTGGTGTCGTA-TTTTCTTCGTCGAGGCACTATCGTCGGAGCATCGTCGGAGAACCTGACTGG
381 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * * * *
19962467 CGGCATTGGGGTTCTGGCAATCGGGCGGGCCGAGGGGGGTGTACGCACATGATGTGCGATGGGTA
446 CGGCATTGGGGTTCCGACGATCGGG-GGGCC-AGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
19962532 TTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
509 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* *
19962597 AAGAGCATGTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
574 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
19962662 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTCTTTTGTGCATACCA
639 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * ** * * ** *
19962727 AAAAAAATACGAGGATCATGTCTACCAAGTTTCTTCGACGGGGCACCA-T-CAT-CG-GAGCATC
704 ACAAAAATACAAGGATCACGTCTACCAAG--T-TT-G--GGGCCAAAACTCCTTCCGAAAAAATT
** * * * * ** * * ** * ** * *** *
19962788 GCAGGAGAACCT-GACCGACGGCATTAAGGTTCTGACGATCG-G-GAGGTTG-GGGCGGGT-GTG
763 TTA-AAAAATCTCGA---ACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCGT-
** * * ** ** * * ** * *
19962848 C--GCACATG-ATGTGTGATGGGTGCTGGTACTT--GGCCCGCATACGGAGTTCA-TTCCAAGTC
822 CTTGC-CATGAAACT-TCA--CGTGAAGG--CTTAAGGGAC-CAT-TGTA-TGAATTTACAAGCC
** **
19962907 -TAAGCATACGGAGATCATTCCCA
878 ATAA--A-AATG-G--CATTGGCA
* * * * * * * **** * *
19962930 -GTCTA-AAATCGGACCGGACCGATGGTTG-CGACA-GCACAT-GC-TGGGATCGA-GCATGTGC
1 TG-C-AGAAAT---A--TGA-AGAT-G-TGCCTAAACCCACCTACCACCCTATCGATCCACG-GC
*** ** * * * ** ** * **
19962988 TGGTGCTGCAT-TTTTCT-TCGTTGG--GGCACCATTGCCAGAGCATCGTCGGAGAACCTAACCG
55 T--TGC-GCATCCCGTCTCTC--TGGCCGGC-GTAGTGCC--CGC-CCG-C-CCGCTCGT-TTCG
* * * * ** * ** ****** * *** * * *
19963049 ACGGCATTGGGGTTCTGGTGATTGGGGGGGC-CGGGGGGTGTGCCCA-CATGA-TGTA-CGTGGG
108 TCGG--TT-GGCTT-AGG-CATACGGAGTTCATTCCCAGTCT-AAGATCA-GACCGAACCGAGGG
* * * * *
19963110 TTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCAGGTCGATCCCTGGCTTACGCATCCCGC
166 TTGCGGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGC
* * **
19963175 CCCTCTGGCTGGCTGAGTGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-T
231 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
19963239 -----TC----C-T----AG-TC--T---A---T--GATCGAACCAGACCGAGGGTTACGACAGC
296 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * * *
19963279 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCGTTTTTCTTCATCGGGGCACCATCGCCGAAGCA
361 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
** * * * ** *
19963344 TCACCGGAGAACCTGACCAGCAGCATTGGGGTTTCGGTGATCAGGAGGGCCTA--GGGGT-TGCG
426 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-AGGGGGGTGTGCG
* * * * * *
19963406 TACATGATGTACGACGGGTACTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTTATCAAAGC-
489 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
19963469 TCAGGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAA
554 TGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
19963534 AGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGC
618 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
19963599 TGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGACGAAAACT
683 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * ** * *
19963664 CTTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAA-TTTTGAAAATCATGAAAAATAGAAC
748 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * *
19963728 ACG-GTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCC
813 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
19963792 ATAAAAATGGCATTGGCA
878 ATAAAAATGGCATTGGCA
** *
19963810 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
19963875 GTCTCTCTGGCCGGCGTAGTGCCCCCTCGCCCGCCCGTCCGGTCGTTTCCTCTGTTGGCTTAGGC
66 GTCTCTCTGGCCGGCGTAGTG---CC-CGCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGC
** * * * * *
19963940 ATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACTGAGGGTTGCGGTAGCAGGATCAGCAGC
123 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGC
** * *
19964005 ACGCAG-AGAGCAACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAG-
188 ACGCAGAAG-GGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GC
* * ** *
19964068 CTGCACGCTCGTTTCGTGGGTTGACTTACGCATACATAGTTCATTTCCAGTCTAAGCATACGGAG
251 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* ** * *
19964133 TTCATTCCCAGTCTGAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGTATG
316 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
** * * ** * * *
19964198 TGCTGGTGCAACATTTTTCTTCATCGGGGCACCAACACCAGAGCATCGTCGGAGAACCTGATCAG
381 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
** * * * * *
19964263 CGGCATTGGGGTTCCGGTGATCGAGGGGCCAGGGGGGGGTGTGCACATGATGTGTGATGTGTGCT
446 CGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
19964328 AGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTTGAGAACTCACACCCCCTCAAA
511 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
* *
19964393 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTT
576 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
19964458 TTTCAAATGGTCAGAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
641 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
19964523 AAAAGTACAATGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAA
706 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
19964588 TCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
771 TCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
19964653 TCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGAATTGGCA
836 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19964713 TGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGAT-CATTGGCTTGCACATCC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTGCGCATCC
* ** *
19964777 CTTCTCTCTGGGTGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGA
65 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * *
19964842 GTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAGCAGCAAGATCGGTAGCACGCAGA
130 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGA
* ** * *
19964907 AGGGGACCCGGTCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCGACTGAGTGCCCGCACGCT
195 AGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
19964972 CGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCC
260 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
19965037 AGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGGACATGCGGGGCTCGGGCATGTGTTGGTGC
325 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * * * *
19965102 CGCATTTTTCTTTGCCGGGGCACCATCGCCAGAGCTTCGTCAGAGAACCTGACCGGTGGCATTAG
390 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * * * *
19965167 GGTTCCGACGATCAGGGGGGTCAGGGGGGTGTGCGAATATGATGTGCCATGGGTGGTGGTACTTG
455 GGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
19965232 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
519 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
* *
19965297 GAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAAT
584 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
19965362 GGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGACTTTTTTTGTGCATGCCAACAAAAATAC
649 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* ** *
19965427 AAGGATCACGTCTACAAAGTTTACGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CTGAA
714 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAA
* * * * *
19965491 CTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
778 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
19965556 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
843 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19965609 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATTCACGGCTTGCGCATCCC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * * *
19965674 GTCTCTCTAACCGGCCTAGTGCCCGCCTGCCTGACCGCTCGTCCGTTCATTTCGTCAGTTGGCTT
66 GTCTCTCTGGCCGGCGTAGTGCCCG-C--CC-G--C-C-CG--C--TCGTTTCGTCGGTTGGCTT
* * *
19965739 AGGCATACGGAGTTCATTCCTAGTCTAAGATC-GAACCGGATCGAGGGTT-CTGGCAGC---AT-
119 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCGAGGGTTGC-GGCAGCAGGATC
* * *
19965798 -GT---A-G-AG--GGGGACCCGGCCGATCCCTGGCTTGCACATCCCGCCCCTCTGGTCGACTGA
182 GGTAGCACGCAGAAGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
** * * *
19965855 GCGCCTACATGCTCGTTTTGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
247 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
19965920 GAAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
312 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * ** * *
19965985 CATGTGCTGGTGCCACGTTTTTCTTCACCGGGGCACCATCGTCGGAGCATC-ACCGAGAACCTGA
377 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * *
19966049 CCGGCGACTTTGGGG-TCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGAGATGG
442 CCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGG
* ** *
19966112 GTGCTGGTACTTGACCCTTATATTGGCCCCCTAAACCTCATCAAACCTCGAGAACTCACACCCCC
506 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
*
19966177 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGAC
571 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
19966242 ACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
636 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
19966307 CCAACAAAACTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAACTTTTA
701 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*
19966372 AAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
766 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
19966437 AAACTTGACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCTTTGGCA
831 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19966502 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGT-TCGATCCACGGCTTGTGCATCC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-TATCGATCCACGGCTTGCGCATCC
* * * *
19966566 CATCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATA
65 CGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** *
19966631 CGGAGTTCATTTCCAGTCTAAGATCAGACC-AGACCGAGGGTTGCGACAGCAGGATCGACAGCAT
126 CGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
* * * * * *
19966695 GCAG-AGGGTGACACGACCGATCCTTCGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCTCG
190 GCAGAAGGG-GACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
19966759 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTC
254 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * ** * *
19966824 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCACATGCGGGGCTTGGGCATGTGC
319 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * **
19966889 TAGTGCCGCATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCGCCAAAGAACCTGACCGGCGG
384 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGG
* * * * *
19966954 TATTGGGGTTCC-AGTGATCGGGGGG-AACGGGGGTGTGTCCGCAAATGATGTGCGATGGGTGCT
449 CATTGGGGTTCCGA-CGATCGGGGGGCCA-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCT
*
19967017 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
511 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
19967082 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAG-CATTAAAGTGTCTGAAATGGGGACACTT
576 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * *
19967146 TTTTCAAATGATCACAAAAACTTATACCCTTCGAGTTTTTA-CTTGAATTTTTTTATGCATGCCA
640 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCATGCCA
* ** * *
19967210 ACAAAAATAAAAGGATCTTGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTTAAAA
704 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * *
19967275 AATCTCGAACCGCAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTTGTTTTGCCATGAAA
769 AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
19967340 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGAA
834 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** *
19967402 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
19967467 GTCTCTTTGGCCGACGTAGTGCCTGCCTGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGC
66 GTCTCTCTGGCCGGCGTAGTG-C--CC-GCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGC
* * * * *
19967532 ATACAGAGTTCATTCCCAGTCTAAGATTAGACCAAACCGAGGGTTGTGGCTGCAGGATCGGTAGC
123 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGC
* * * * *
19967597 ACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGTAT-CCGCCCCTCTGGCCGGCTGAGTGCCC
188 ACGCAGAAGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
19967661 GCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTGAGCATATGGAGTT
253 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * ** * * * *
19967726 CATTGCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGTACCACATGCTGGGCTCGGCCATGTG
318 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
19967791 CTGGTGCCGCATTTCTCTTCGTCGTGGCACTATCG-CTGGAGCATCGTCGGAGAACCTGACCGAC
383 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGGC
* * * *
19967855 GACATTGGGGTTTCGACGATCGGGGGGGTC-GGAGGGTGTGCGCACATGATGTGCGATGGGTGCT
447 GGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
19967919 GGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGGGAACTCACAACCCCTTAAA
511 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
* **
19967984 GAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAACAAAGTGTCTGAAATGGGGACACTTT
576 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
19968049 TTTCAAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATATTTTTATGCATGCCAA
641 TTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** * *
19968114 CAAAAAAACAAGGATCATGTCTAAAAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAA
705 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
19968179 ATCCCGAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAAC
770 ATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
19968244 CTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCA
835 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
19968305 TGCAGAAATATGAAGACGTGCATAAATCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
19968370 GTCTCTCTGGCCGGTGTAGTGCCTGCCCGCCCATCCGCCTGCTCGTTTCGTGGGTTGGCTTAGGC
66 GTCTCTCTGGCCGGCGTA--G--TGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * ** *
19968435 ATGCAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAAGATCGGTAGC
123 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGC
* * * * *
19968500 ATGCAGATGGGGACCCGGCCGATCCCTGGCTTGGGCATCCCGCCCCTCTGGCCGGTTGAGCGCGC
188 ACGCAGAAGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * ** * * * * *
19968565 ACATGCCCATTTCACGGGTTAACTTTGGCATACAGAGTTCATTCCCATTCTAAGCATACAGAGTT
253 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
** *
19968630 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
318 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
19968695 CTGGTGCCGTATTTTTCTTCGTC--GG-------GTC--ATCATCGTTGGAGAACCTGATCGACG
383 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCG
* * ** * *
19968749 ACATTGGGGTTTCGGTGATCGGGGGGTC-GGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGG
448 GCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
19968813 TACTTGGCCCTTAT-TGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
513 TACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
* *
19968877 AGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
577 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
19968942 TTCAAATGGTCACAAAATCTTGTACGCTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
642 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * ** *
19969007 AAAATAGAGGGATCACCTCTACCAAGTTTGGTTCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
707 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * ** * *
19969072 CCCAAACTACAAAAAGTTTCAAAAATCGTTAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
772 CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
19969137 CACGTGAAGGCTTAAGGGACCATTG-ATGAACTTACAAGCCATAAAAATGGCATCGCCA
837 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * *
19969195 CCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACATGCGCATCCC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
19969260 GTCTCTCTGGTCGGTGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
66 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * ** *
19969325 TTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAG
131 TTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAA
* * * * *
19969390 GGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTTTGGCCGGCTGAGGGCCCGCACGCTC
196 GGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
19969455 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCAA
261 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * * * *
19969520 GTCTAAGATTGAATCAAACCAAGGGTTGTGGTAGCACATGCTAGGCTCGAGCATGTGCTGGTGCC
326 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * **
19969585 GCATTTTTCTTTGCCGGGGCACCATTGTCGGAGCATCTTCGGAGAACCTGACCGGTAGCATTGGG
391 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* * * *
19969650 GTTCCGGCGATCAGGGGGGCC-GGGAGGTGTGCGCACATAATGTGCGATGGGTGGTGGTACTTGG
456 GTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
19969714 CCCTTATTTTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAAGCATTT
520 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT-AAAGAGCATTT
* * *
19969779 GAGATTTTACAGGTTTGCTGCTAGTAGCCACTAAAGTGTCCGAAATGGGGACACTTTTTTCAAAT
584 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
19969844 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAA
649 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
19969909 AAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGGAAGAATTTTAAAAAATCTTGAAC
714 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAC
* * *
19969974 CCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCATGAAACTTCACGTGA
779 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
19970039 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
844 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
19970091 TGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
19970156 GTCTCTCAGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCCTGCCGCTCGTTTCGTCAGTTGG
66 GTCTCTCTGGCCGGCGTAGT--------G--C-C-CGCCCG-C--CCGCTCGTTTCGTCGGTTGG
* * ** * *
19970221 CTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGACCGAGTTTTGCAGTAGCAGGAT
116 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGAT
** * * * **
19970286 CGACAGCATGCA-AAGGGGGACTCGGCCGATCCCTGGCTTGCGCATACCGCCCCTCTGGCCGAAT
181 CGGTAGCACGCAGAA-GGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** * *
19970350 GAGCGCCTACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCAT
245 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
** * * *
19970415 ACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGTGGGTTACGGTAGCACATGCTGGGCTCG
310 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * **
19970480 AGCATTTGCTGGGGCCGCATTTTTCTTCG-CTAGGGCACCATCACCGGAGCATCGTCGGAGAACC
375 GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * * *
19970544 TGACCGGCAGCATTGAGGTTCAGGCGATCGGAGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
439 TGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCAGGGGGGTGTGCGCACATGATGTGCGA
*
19970608 TGGGTGCT-GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAA-CTTCAAGAACTCACA-
503 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GAGAACTCACAC
* *
19970669 CCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGG
567 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
19970734 GGACACTTTCTTCAAATGGTCAGAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTATG
632 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
19970799 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCAAAAACTCCTTCC-AAAAGAA
697 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AA
* * * * * *
19970863 TTTGAAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
761 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
19970928 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
826 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
19970993 TGGCA
891 TGGCA
* *
19970998 TGCAGAAATATTAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
1 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
19971063 GTCTCTCTGGCCGGCGTAGTGCCCGTCCGCTTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGC
66 GTCTCTCTGGCCGGCGTAGTGCCCG-CC-C--G--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGC
* * *
19971128 ATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCAAGGGTTGCAGCAG
123 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAG
19971180 GACATGCTGG
Statistics
Matches: 8585, Mismatches: 1203, Indels: 561
0.83 0.12 0.05
Matches are distributed among these distances:
871 9 0.00
872 10 0.00
873 124 0.01
874 21 0.00
875 10 0.00
876 13 0.00
877 7 0.00
879 3 0.00
880 11 0.00
882 266 0.03
883 3 0.00
884 7 0.00
885 75 0.01
886 18 0.00
887 15 0.00
888 18 0.00
889 15 0.00
890 116 0.01
891 205 0.02
892 164 0.02
893 717 0.08
894 160 0.02
895 648 0.08
896 804 0.09
897 280 0.03
898 40 0.00
899 481 0.06
900 622 0.07
901 545 0.06
902 606 0.07
903 1012 0.12
904 281 0.03
905 116 0.01
906 19 0.00
907 392 0.05
908 99 0.01
909 51 0.01
910 26 0.00
911 363 0.04
912 1 0.00
913 8 0.00
914 11 0.00
915 3 0.00
916 2 0.00
917 5 0.00
918 11 0.00
919 7 0.00
920 21 0.00
921 125 0.01
922 10 0.00
923 9 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (895 bp):
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAA
GGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
GTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
Found at i:19965925 original size:26 final size:26
Alignment explanation
Indices: 19965888--19965940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19965878 TTTGACTTAG
* *
19965888 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
19965914 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
19965940 G
1 G
19965941 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:19966821 original size:26 final size:26
Alignment explanation
Indices: 19966785--19966837 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19966775 GTTGACTTAG
*
19966785 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19966811 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19966837 G
1 G
19966838 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19967718 original size:26 final size:26
Alignment explanation
Indices: 19967688--19967737 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19967678 GTTGACTTAG
19967688 GCATATGGAGTTCATTCCCAGTCTGA
1 GCATATGGAGTTCATTCCCAGTCTGA
*
19967714 GCATATGGAGTTCATTGCCAGTCT
1 GCATATGGAGTTCATTCCCAGTCT
19967738 AAGATTGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTGA
Found at i:19968129 original size:903 final size:903
Alignment explanation
Indices: 19960214--19984019 Score: 16095
Period size: 900 Copynumber: 26.1 Consensus size: 903
19960204 TTGTTTGCAA
* * *
19960214 AAATATGAAGATGTCCCTAATCCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * ** *
19960279 TCTGGCCGGCGTCGTGCCTGCCCGCCCGCTCGTCCGCCCGCTCGACTCGTCAGTTGGCTTAGGCA
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCG--C--CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * *
19960344 TACGGAGTTCATTCCTAATCTAAGATTGGACCAGACCGAGGGTTGTGGCAGTAGGATCGGTAGCA
127 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCA
* * ** * *
19960409 CGTAAAGGGGGACCCGACCGATCCCCAGCTTGCTCATCCAGCCCCTCTGGCCGGCTGAGCGCCCG
192 CGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
19960474 CACGCTCGTTTCTTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
257 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* ** * * * *
19960539 ATTCCCAGTCTAAGATCGGACCAAATTGAGGGTTGCAGCATCACATGCTGGGCTCAGGCATATGC
322 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* ** * * *
19960604 TGGTGCCACATTTTTCTTCGTCGGGGCAATATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGG
387 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGA
* * * * * *
19960669 CATTGGAGATCCGACGATC-AGGGGGCCGGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTG
452 CATTGGGGTTTCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
19960733 GAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
515 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
* *
19960798 AGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
580 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * **
19960863 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTTTTTGTACATGAGAACA
645 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
19960928 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT-AAAAAT
710 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * *
19960992 CTCAAACTGCAAAAAGATTC-AAAATCGTGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTT
775 CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
19961056 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGCCATGCAG
840 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
19961119 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
19961184 TCTGGCCGACGTCGTGCCCGCCCGCCCACTCGTCC-GCTCGTTTCGTCGGTTGGCTTCGGCATAC
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * *
19961248 GGAGTTCATTCCCAGTCTAAGAT-TGGGCAGGATCGAGGGTTGCGGTAGTAGGATCGATAGCACG
130 GGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * **
19961312 AAGAGGGGGACCC-AGCCGATCCCTGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGTGCCCAT
194 CAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
19961376 GCGCTTGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCA
258 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * *
19961441 TTCCCAGTCTAAGATAGGTCCAAACCGAGGGTTACAGTAGCACATGCTGGGCT-GGGCATGTGCT
323 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * *
19961505 GGTGCCGTA-TTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGGTGGC
388 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGAC
** *
19961569 ATTGGGG-TTCTGACGATCGGACGGGCCGGGGGGGTGTGCGCAGATGATGTGCGATGGGTGCTGG
453 ATTGGGGTTTC-GACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
19961633 TACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCTTTAAAGA
516 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
* * * *
19961698 GCATGTGAGATGTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTT
581 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
19961763 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTT-TGCATGCCAACA
646 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACA
* *
19961827 AAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
710 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * *
19961892 CCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
775 CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* ** *
19961957 CACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAA
840 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
19962021 AAATATGAAGATATGCCTAAACCCA-CTAACCACCTTATCGATCCACGACTTGCGCATCCCATCT
1 AAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * ** * * *
19962085 CTTTGGTCGACGTAGTGCCCGTCCGCCTGCCCTCCCACTTGTTTCATCGGTTGGCTTAGGCATAT
65 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *
19962150 GGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGATGCGGTAGTAGGATCGGCAGCATGC
130 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
* * * ** * *
19962215 AGAGGGGGACCCGACTGATCCCCGACTTGCGCATCTTGCCTCTCTGGCCAGCTGAGCGCCCGCAC
195 AGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
19962280 GCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATT
260 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * *
19962345 TCCAGTCTAAGATCGGACCAAACCGAGGGTTACGGCAGCACATGCAGGGCT-GGGCATGTGTTGG
325 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * *
19962409 TGTCGTA-TTTTCTTCGTCGAGGCACTATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCAT
390 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACAT
* * * * **
19962473 TGGGG-TTCTGGCAATCGGGCGGGCCGAGGGGGGTGTACGCACATGATGTGCGATGGGTATTGGT
455 TGGGGTTTC-GACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
19962537 ACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
517 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
* *
19962602 CATGTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
582 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
19962667 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTCTTTTGTGCATACCAAAAAA
647 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * ** * * ** *** *
19962732 AATACGAGGATCATGTCTACCAAGTTTCTTCGACGGGGCACCA-T-CAT-CG-GAGCATCGCAGG
712 AATACAAGGATCACGTCTACCAAG--T-TT-G--GGGCCAAAACTCCTTCCGAAAAAATTTTA-A
* * * ** * * ** * ** * *** *
19962793 AGAACCT-GACCGACGGCATTAAGGTTCTGACGATCG-G-GAGGTTG-GGGCGGGT-GTGC--GC
770 AAAATCTCGA---ACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCGT-CTTGC
** * * ** ** * * ** * *
19962851 ACATG-ATGTGTGATGGGTGCTGGTACTT--GGCCCGCATACGGAGTTCA-TTCCAAGTC-TAAG
830 -CATGAAACT-TCA--CGTGAAGG--CTTAAGGGAC-CAT-TGTA-TGAATTTACAAGCCATAA-
** **
19962911 CATACGGAGATCATTCCCA-GTCTA-
885 -A-AATG-G--CATTGGCACG-C-AG
* * * * * * * **** * *
19962935 AAATCGGACCGGACCGATGGTTG-CGACA-GCACAT-GC-TGGGATCGA-GCATGTGCTGGTGCT
1 AAAT---A--TGA-AGAT-G-TGCCTAAACCCACCTACCACCCTATCGATCCACG-GCT--TGC-
*** ** * * * * * **** * * *
19962995 GCAT-TTTTCT-TCGTTGG--GGCACCATTGCCAGAGCATCGTCGGAGAACCTAAC-CG--ACGG
54 GCATCCCGTCTCTC--TGGCCGGC-GTAGTGCC--CGC-CCGCCCGCCCGCCT-GCTCGTTTCGT
* * * * ** * ** *** ** ** ** * ** *
19963053 C-ATTGGGGTTCTGGTGATTGGGGGGGC---CGGGGGGTGTGCCCACATGATGTA-CGTGGGTTG
112 CGGTT-GGCTT-AGG-CATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-G-ACCGAGGGTTG
* * ** *
19963113 CGGCAGCAGGATCGATAGCACGCAGAGGGGGACCAGGTCGATCCCTGGCTTACGCATCCCGCCCC
172 CGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCC
* * **
19963178 TCTGGCTGGCTGAGTGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-T---
237 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
19963239 --TC----C-T----AG-TC--T---A---T--GATCGAACCAGACCGAGGGTTACGACAGCACA
302 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
* * * * *
19963282 TGCTGGGCTCGGGCATGTGCTGGTGCCGCGTTTTTCTTCATCGGGGCACCATCGCCGAAGCATCA
367 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * ** * * ** *
19963347 CCGGAGAACCTGACCAGC-AGCATTGGGGTTTCGGTGATCAGGAGGGCCTAGGGGT-TGCGTACA
432 TCGGAGAACCTGACCGGCGA-CATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACA
* * * * * *
19963410 TGATGTACGACGGGTACTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTTATCAAAGC-TCAG
496 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA-
* * *
19963473 GAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTG
560 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
19963538 TCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAA
625 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * *
19963603 TTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGACGAAAACTCTTT
690 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * ** * *
19963668 CCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAA-TTTTGAAAATCATGAAAAATAGAACACG-
755 CCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
19963731 GTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAA
820 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
19963796 AAATGGCATTGGCACACAG
885 AAATGGCATTGGCACGCAG
*
19963815 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
19963880 TCTGGCCGGCGTAGTGCCC-CCTCGCCCGCCCGTCC-GGTCGTTTCCTCTGTTGGCTTAGGCATA
66 TCTGGCCGGCGTAGTGCCCGCC-CGCCCGCCCG-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * * *
19963943 CGGAGTTCATTCCCAGTCTAAGATTGGATC-GAACTGAGGGTTGCGGTAGCAGGATCAGCAGCAC
129 CGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
* ** * *
19964007 GCAGAGAGCAACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAG-CTG
193 GCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCCG
* ** *
19964071 CACGCTCGTTTCGTGGGTTGACTTACGCATACATAGTTCATTTCCAGTCTAAGCATACGGAGTTC
257 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* ** * *
19964136 ATTCCCAGTCTGAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGTATGTGC
322 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
** * * ** * * * *
19964201 TGGTGCAACATTTTTCTTCATCGGGGCACCAACACCAGAGCATCGTCGGAGAACCTGATCAGCGG
387 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGA
* ** * * * * * *
19964266 CATTGGGGTTCCGGTGATC-GAGGGGCCAGGGGGGGGTGTGCACATGATGTGTGATGTGTGCTAG
452 CATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
19964330 TACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTTGAGAACTCACACCCCCTCAAAGA
516 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
* *
19964395 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTT
581 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
19964460 TCAAATGGTCAGAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
646 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * *
19964525 AAGTACAATGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATC
711 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * *
19964590 TCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
776 TCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
19964655 ACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGAATTGGCATGCAG
841 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
19964718 AAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGAT-CATTGGCTTGCACATCCCTTCT
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTGCGCATCCCGTCT
** *
19964782 CTCTGGGTGGCGTAGT----GCCCGCCCG--C-CC-GCTCATTTCGTCGGTTGGCTTAGGCATAC
65 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
19964839 GGAGTTCATTCCCAGTCTAAGATCGGACC-GAACTGAGGGTTGCAGCAGCAAGATCGGTAGCACG
130 GGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* ** ** * *
19964903 CAGAAGGGGACCCGGTCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCGACTGAGTGCCCGCA
194 CAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
19964968 CGCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGCCTAAGCATACGGAGTTCAT
259 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
19965033 TCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGGACATGCGGGGCTCGGGCATGTGTTG
324 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * * *
19965098 GTGCCGCATTTTTCTTTGCCGGGGCACCATCGCCAGAGCTTCGTCAGAGAACCTGACCGGTGGCA
389 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACA
* * * * * * * *
19965163 TTAGGGTTCCGACGATCAGGGGGGTCAGGGGGGTGTGCGAATATGATGTGCCATGGGTGGTGGTA
454 TTGGGGTTTCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
19965228 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
518 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
* *
19965293 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAATTTTTTC
583 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
19965358 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGACTTTTTTTGTGCATGCCAACAAAA
648 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* ** *
19965423 ATACAAGGATCACGTCTACAAAGTTTACGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-C
713 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
* * * *
19965487 TGAACTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
778 -GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
19965552 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
842 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
19965614 AAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATTCACGGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
** * * * * * * *
19965679 TCTAACCGGCCTAGTGCCCGCCTGCCTGACCGCTCGTCCGTTCATTTCGTCAGTTGGCTTAGGCA
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-C-T--GCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
19965744 TACGGAGTTCATTCCTAGTCTAAGATC-GAACCGGATCGAGGGTT-CTGGCAGC---AT--GT--
127 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGC-GGCAGCAGGATCGGTAG
* * * *
19965800 -----AGAGGGGGACCCGGCCGATCCCTGGCTTGCACATCCCGCCCCTCTGGTCGACTGAGCGCC
190 CACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
** * * * *
19965860 TACATGCTCGTTTTGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGT
255 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
19965925 TCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
320 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * ** * *
19965990 GCTGGTGCCACGTTTTTCTTCACCGGGGCACCATCGTCGGAGCATC-ACCGAGAACCTGACCGGC
385 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGC
* * *
19966054 GACTTTGGGG-TCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTG
450 GACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* ** *
19966118 GTACTTGACCCTTATATTGGCCCCCTAAACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
515 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
*
19966183 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTT
580 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
19966248 TTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
645 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
19966313 AAACTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAACTTTTAAAAAAT
710 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
*
19966378 CTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
775 CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
19966443 GACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCTTTGGCACGTAG
840 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
19966507 AAATATGAAGATGTGCCTAAACCCACCTACCACCCGT-TCGATCCACGGCTTGTGCATCCCATCT
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCC-TATCGATCCACGGCTTGCGCATCCCGTCT
* * *
19966571 CTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCG--T--TCGTTTCATCGGTTGGCTTAGGCATAC
65 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** *
19966632 GGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCATGC
130 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
* * * * * *
19966697 AGAGGGTGACACGACCGATCCTTCGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCTCGCAC
195 AGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
19966762 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATT
260 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * ** * * *
19966827 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCACATGCGGGGCTTGGGCATGTGCTAG
325 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * ** **
19966892 TGCCGCATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCGCCAAAGAACCTGACCGGCGGTAT
390 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACAT
* * ** * * *
19966957 TGGGG-TTCCAGTGATCGGGGGGAACGGGGGTGTGTCCGCAAATGATGTGCGATGGGTGCTAGTA
455 TGGGGTTTCGA-CGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTA
19967021 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
518 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
19967086 ATTTGAGATTTTACAGGTTTGCTGCCAGTAAG-CATTAAAGTGTCTGAAATGGGGACACTTTTTT
583 ATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * *
19967150 CAAATGATCACAAAAACTTATACCCTTCGAGTTTTTA-CTTGAATTTTTTTATGCATGCCAACAA
647 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCATGCCAACAA
* ** * *
19967214 AAATAAAAGGATCTTGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAATC
711 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * *
19967279 TCGAACCGCAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTTGTTTTGCCATGAAACTTC
776 TCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
19967344 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGAACACAG
841 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
19967407 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * *
19967472 TTTGGCCGACGTAGTGCCTGCCTGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACA
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * *
19967537 GAGTTCATTCCCAGTCTAAGATTAGACCAAACCGAGGGTTGTGGCTGCAGGATCGGTAGCACGTA
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* *
19967602 GAGGGGGACCCGACCGATCCCTGGCTTGCGTAT-CCGCCCCTCTGGCCGGCTGAGTGCCCGCACG
196 GAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * *
19967666 CTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTGAGCATATGGAGTTCATTG
261 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* ** * * * *
19967731 CCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGTACCACATGCTGGGCTCGGCCATGTGCTGGT
326 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
19967796 GCCGCATTTCTCTTCGTCGTGGCACTATCG-CTGGAGCATCGTCGGAGAACCTGACCGACGACAT
391 GCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGGCGACAT
* *
19967860 TGGGGTTTCGACGATCGGGGGGGTCGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
455 TGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
19967925 TGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGGGAACTCACAACCCCTTAAAGAGGAT
520 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
**
19967990 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCAACAAAGTGTCTGAAATGGGGACACTTTTTTCAA
585 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-A
* * *
19968055 AATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATATTTTTATGCATGCCAACAAAAA
649 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * ** * * *
19968120 AACAAGGATCATGTCTAAAAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCG
714 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
* * *
19968185 AATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACCTCACG
779 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
19968250 TGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCATGCAG
844 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
19968310 AAATATGAAGACGTGCATAAATCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * ** * * *
19968375 TCTGGCCGGTGTAGTGCCTGCCCGCCCATCCGCCTGCTCGTTTCGTGGGTTGGCTTAGGCATGCA
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** * *
19968440 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAAGATCGGTAGCATGCA
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * * * * *
19968505 GATGGGGACCCGGCCGATCCCTGGCTTGGGCATCCCGCCCCTCTGGCCGGTTGAGCGCGCACATG
196 GAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * ** * * * * *
19968570 CCCATTTCACGGGTTAACTTTGGCATACAGAGTTCATTCCCATTCTAAGCATACAGAGTTCATTC
261 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
** *
19968635 CCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
326 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
19968700 GCCGTATTTTTCTTCGTC--GG-------GTC--ATCATCGTTGGAGAACCTGATCGACGACATT
391 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACATT
** * *
19968754 GGGGTTTCGGTGATC-GGGGGGTCGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTACTT
456 GGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
19968818 GGCCCTTAT-TGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
521 GGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
* *
19968882 TTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
585 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
19968947 ATGGTCACAAAATCTTGTACGCTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
650 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * ** * * *
19969012 AGAGGGATCACCTCTACCAAGTTTGGTTCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAA
715 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA
** * *
19969077 ACTACAAAAAGTTTCAAAAATCGTTAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
780 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * *
19969142 GAAGGCTTAAGGGACCATTG-ATGAACTTACAAGCCATAAAAATGGCATCGCCACCCAG
845 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
19969200 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACATGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
19969265 TCTGGTCGGTGTAGT----GCCCGCCCG---TCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACG
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
** * * **
19969322 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCA
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
** * * * *
19969387 GAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTTTGGCCGGCTGAGGGCCCGCACG
196 GAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
19969452 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTC
261 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * * * * *
19969517 CAAGTCTAAGATTGAATCAAACCAAGGGTTGTGGTAGCACATGCTAGGCTCGAGCATGTGCTGGT
326 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
19969582 GCCGCATTTTTCTTTGCCGGGGCACCATTGTCGGAGCATCTTCGGAGAACCTGACCGG-TAGCAT
391 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGA-CAT
* * * * * *
19969646 TGGGGTTCCGGCGATCAGGGGGGCCGGGAGGTGTGCGCACATAATGTGCGATGGGTGGTGGTACT
455 TGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
19969711 TGGCCCTTATTTTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAAGCA
520 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT-AAAGAGCA
* * *
19969776 TTTGAGATTTTACAGGTTTGCTGCTAGTAGCCACTAAAGTGTCCGAAATGGGGACACTTTTTTCA
584 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
19969841 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
649 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
19969906 TAAAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGGAAGAATTTTAAAAAATCTTG
714 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
* * *
19969971 AACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCATGAAACTTCACG
779 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
19970036 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
844 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
19970096 AAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
19970161 TCAGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCCTGCCGCTCGTTTCGTCAGTTGGCTTAG
66 TCTGGCCGGCGTAGTGCCCGCCCG--C-C-CGCCCGCCT---GCTCGTTTCGTCGGTTGGCTTAG
* * ** * * **
19970226 GCATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGACCGAGTTTTGCAGTAGCAGGATCGACA
124 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * * * **
19970291 GCATGCAAAGGGGGACTCGGCCGATCCCTGGCTTGCGCATACCGCCCCTCTGGCCGAATGAGCGC
189 GCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
** * *
19970356 CTACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCATACGGAG
254 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
** * * * * *
19970421 TTCATTCCCAGTCTAAGATCAAACCAGACCGTGGGTTACGGTAGCACATGCTGGGCTCGAGCATT
319 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * **
19970486 TGCTGGGGCCGCATTTTTCTTCG-CTAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCG
384 TGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * *
19970550 GC-AGCATTGAGG-TTCAGGCGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
448 GCGA-CATTGGGGTTTC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
19970613 GCT-GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAA-CTTCAAGAACTCACA-CCCCT
511 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GAGAACTCACACCCCCT
* *
19970674 TAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACA
575 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
19970739 CTTTCTTCAAATGGTCAGAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
640 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
19970804 CAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCAAAAACTCCTTCC-AAAAGAATTTGA
705 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTA
* * * * *
19970868 AAAAATCCCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
769 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
19970933 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
834 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
19970998 TGCAG
899 CGCAG
* *
19971003 AAATATTAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* **
19971068 TCTGGCCGGCGTAGTGCCCGTCCGCTTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
19971133 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGGA-CATGCTGG--GCTCG
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT-C-GGTAGCAC-
* * * ** * * * * **
19971195 GGCATGTGCTGGTGTCACATTTTTCTTCGCCCGGGCACCATCG-TCGGAGCATCGTCGGAGAACC
193 -GCA-GAG--GG-G-GAC------C--CGACCGATC-CC-TGGCT-TGCGCATC--C--CGCCCC
* * * * * ** ** * * * *
19971259 TGAC-CGACGGCATTG-GGGTTCCGGTGAACG-GGGGGTCGGGGGGTG---T-GCGCACA-TGAT
237 T--CTGGCCGGC--TGAGCG--CC--CGCACGCTCGTTTCGTGGGTTGACTTAG-GCATACGGA-
* * ** ** * **** *
19971316 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCA-T-TAA-ACCTCGAGA
292 GTTC-AT---TCCCAGT-CTAAG--C--ATA-CGGAGTTC-ATTCC-CAGTCTAAGA--TCG-G-
* *** *** * ** * *** * ** **
19971378 ACTCAAACC--CCCTTAAAG-TGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAG-C-CATTAA
341 AC-CAGACCGAGGGTTGCGGCAGCACATGCTG-GGCT-CGGGCATG-TGCTGGT-GCCGCATT--
*** ** ** * * ** * * ** *
19971437 TGTGTCTAAAT-GGGG-A-CACTTTTTTGA-AATGGTCACAAAATCTTGTACACTTCGAGC-TTT
399 T-T-TCTTCGTCGGGGCACCA-TCGTCGGAGCATCGTCGGAGAA-CCTG-AC-CGGCGA-CATTG
** * ** **** * * * ** ** * * **
19971497 TAG-CT-GAATAT-TTTTGTG-C-------ATGC-CAACA-AAAAT-AAAAGGAT-CACGT-C-T
457 GGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGC-ACATGATGTGCGATGGGTGCTGGTACTT
* * **** * * ** * * * * * * *
19971545 --ACC-AAGT-TTGGGGCCAAAAATCCTTCCGA-AAAATGTTTAAAAAATCCCGA-ACCGTAAAA
521 GGCCCTTA-TATT--GGCCCCCTATCCCT-C-ATCAAA-CCTTGAGAACTCAC-ACCCCCT-TAA
* * * *** * * * * * *
19971604 AGTTTAGAAAATCATGAAAAATAGAAAATGAG-TCGTCTTGCCATGAAACTTCACGTGAAG-G-C
578 AG---AG--CAT-TTG--AGATTTTACA-G-GTTTG-C-TGCCA-GTAGC--CA-TTAAAGTGTC
* * * * *
19971666 T-TAA--GGGAC-CATTGTATGAATTTACAA--GCCATAAAA--TTG-ACA-TT-G-G----CAC
627 TGAAATGGGGACAC-TT-T-T---TTCA-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-
* * * *** ** ** * *** * * * *
19971715 GCAGAAATATGAAGATG--TGCCTAAACCCACCTACCACCCT-A--TCGATCCACGGCTT-GCG-
684 GCTGAATTTTTTTG-TGCATGCC--AACAAAAATACAAGGATCACGTCTA-CCA-AGTTTGGGGC
*** * **** * ********* * * ****
19971773 CATCCCGTCTCTCTGGTCG-GCGTAGTGCCCGCCCGCCCG-CCCGCTCGCTCA-TTTC----ATC
744 CAAAAC-TC-CT-T--CCGAAAAAATTTTAAAAAATCTCGAACCG--CAAAAAGTTTCAAAAATC
*** * * * * * * ** *
19971831 GGTTG--GCTTAGGCATACGGAGTTCATTCCCAATCTAAG-CATGCGAAGTTCA-TTCCCAGTCT
802 -G-TGAAAAATA-GAAAAC-GAG-TC-GT--C--T-T--GCCATG-AAACTTCACGT-GAAGGCT
* * *** * ** * * *
19971892 AAGAGTGGACC---GGATCAGGGGTTACGGCAGCACAT---GCTGGGCTTTGGCATGTCCTG
852 TA-AG-GGACCATTGTAT--GAATTTAC--AAGC-CATAAAAAT-GGCATTGGCACG--CAG
* * * * * ** * * ** * * *
19971948 --ATGTCGTA-TTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCACC-AGAGAACCTGACCG-A
1 AAATAT-GAAGATGTGC--C-T--AAAC-CCA-C--C-TACCA-C-CCTATCGATCC--ACGGCT
* *** * * * *** *** * * * * *
19972008 TG-GTATTGGGGT-TC-C-GGCAATCGG-G-GGGGCCGGGGGGTGTGCACACATGAT-G-TGCGA
51 TGCGCA-TCCCGTCTCTCTGGC---CGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCG-
* * ** * * **
19972065 TGGGTGCTGGTACTT-GGCCCTTATATTGGCCTCCTATTCCTCAG-CAAACCTCGAGAACTC-GC
111 TCGGT--TGG--CTTAGG--C--ATA-CGGAGTTC-ATTCC-CAGTCTAAGATC-AG-AC-CAG-
*** *** ** ** ** * ****
19972127 ACC--CCCTTAAAG-AGCATTTGAGAT-TTTA-CA-G--GTTTGCTG-CCAGTAGCC-ATTAAAG
161 ACCGAGGGTTGCGGCAGCA---G-GATCGGTAGCACGCAG-AGGGGGACCCG-A-CCGATCCCTG
** *** * * * *** *** * * ** ** * ** * * *
19972182 TG-TCTG-AAATGGGGACACTTTTTTCAAATG-G-TCACAAAATCTTGTACACTTCGAGTT--TT
219 -GCT-TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT-TTCGT-GGGTTGACT
* * ** ** * * ** * * * * ** *
19972241 TA-GC-TA--AATTTTTTTGTGCATGCCAACAAAAATTC-AAGATCATGTCTACCAAGTTTGCGG
280 TAGGCATACGGAGTTCATT-CCCA-GTC--TAAGCATACGGAGTTCAT-TC--CC-AGTCTAAGA
* ** *** *** * * * ** *** * * *
19972301 CCAAAACTCCTTCCGAAAAAATT---GCA-AAAATTCTCGAACCTC-AAAAAGTTTCAAAAATCG
337 TC-GGAC-CAGACCG--AGGGTTGCGGCAGCACATGCT-G-GGCTCGGGCATG-TGC-----TGG
**** *** * ** * * * * ** * **
19972361 TGAAAAATATAAAACGAGTCGTC-TTG--CCA---T-GAAACTTC-ACGTGA-AGGCTTAAGGGA
390 TGCCGCAT-T-TTTC--TTCGTCGGGGCACCATCGTCGGAGCATCGTCG-GAGAACCTGACCGG-
** * * ****** * *** ** *
19972417 C--CATTGTATGAATTTACAAGCCAT-AAAAATGAC-ATTGGCATGCAG-AAAT-ATGAT--GAT
449 CGACATTG---GGGTTT-CGA-CGATCGGGGGGGCCGGGGGGTGTGC-GCACATGATG-TGCGAT
** **** * * * **** *
19972474 --GTGCCTCAAGCCACGAACCACCCTATCGATCCATGGCTTGCGC-ATCCCGTC-TCTCTGGCTG
507 GGGTG-CT---GGTACTTGGC-CCTTAT--AT---TGGC--CCCCTATCCC-TCATC-AAACCTT
* * * * * ***** ** * * *
19972535 GCGTAGTGCCCGCCCGCCCGCCCGCTCGATTTTTTG-GTTGGCTTAGGCATACAAAGTTCATTCC
558 GAGAACT-CACACCC-CCTTAAAGAGC-A---TTTGAGAT---TT-----TAC--AGGT--TTGC
** * ** * **** **
19972599 CACTCTAAGATCAGACCA--AACCGAGGGT-T-ACGTGAGCAGGATCAGCATCACGCAGAGGGGG
605 TGC-C--AG-T-AG-CCATTAA---AGTGTCTGAAATG-G--GGA-CA-CTTTTTTCA-A-ATGG
** ** * * * ***** *
19972660 ACTCGAC-CGATCCCCGGCTTGCGCA-TACGGAGTTCATTCCCAGGCT-AAGCATACGGAGTTCA
654 --TC-ACAAAAT------CTTGTACACTTC-GAGTT--TT--TA-GCTGAA--TTTTTTTGTGCA
* *** ** * * * * * ** * * **
19972722 TTCC--C-AGTCTAACGTGGAAC-CG--GACCGAGGGTTGCGG-CAGCACATGCTGGGCTCGAGC
702 TGCCAACAAAAAT-ACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAAC-TCCT--TC-CGAAA
** **** ** * ** ** ** * ** **
19972780 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC-ACCA-TCACCGGAGTATCGTCGGAGAACCT-
761 AAAT--T--T-TAAAAAATCTC-GAACC---GCAAAAAGT-TTC-AAAAATCGT--GA-AAAATA
* * *** * * * *** * ** ** ** *
19972842 G--ACCG-G-CGACATTGGGGTTGTAGCGATGGGGGGCCGGGGGGTGTGCG-CACATGATGTGCG
812 GAAAACGAGTCGTC-TT-GCCATGAAAC-TTCACGTG--AAGGCTTAAGGGAC-CAT--TGT---
** ** * * * * ** ** * ** *
19972902 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATC
866 ATGAAT--T--TAC-AAGCCATAAAAATGG--CATTGGCACGCA-G
** * ** * ** * * * * ** * * * *
19972948 AAACCTCAAGAACT--C-ACACCC-CCTTAAAGAGCGTTTGAGATTTTATAGGTTTGC-TA-CCT
1 AAATATGAAGATGTGCCTAAACCCACC-T-ACCACCCTAT-CGA-TCCA-CGGCTTGCGCATCCC
** **** * * ** * ** **** * **
19973007 GTAGC-CATTAAAGTGTCTTAAATG-GGGACACGTTTTTCAAATGGTCACAAAAT-CTTGTACAC
61 GTCTCTC-TGGCCG-G-CGT-AGTGCCCG-CCCG-----C---CCG-C-CCGCCTGCTCGT-TTC
* * * *** * * * * * *
19973069 TTCGAGTT--TTTAGCTGAAT-CTTTTTGTGCA-TGCCA-ACAAAAATACAAGGATCACGTTTAC
110 GTCG-GTTGGCTTAG--GCATAC--GGAGTTCATTCCCAGTCTAAGAT-C-A-GACCA-G---AC
* * * * * * **** **** * **
19973129 C-AAGTTTAG-GGCTA--A-AACTC-CT-TC-CGAAAGAATTTGAAAAAATCCCAAATCGCAAAA
163 CGAGGGTT-GCGGC-AGCAGGA-TCGGTAGCACG-CAGAGGGGGACCCGA--CC-GATC-C--CT
* * * ** ***** * **** ** * ** *
19973186 AG-TTTCGAAAATCATG-AAAAATAGAAAAC-GAGTCGTCTTGCCATGAAAC-TTCACGTGAAGG
218 GGCTTGCG--CATCCCGCCCCTCTGGCCGGCTGAG-CG-CCCG-CACG-CTCGTT-TCGTG--GG
* * *** *** ** * *
19973247 CTTAAGGGACCATTGTATGAATTTAGAAACCATAAAAATGGCATTGT-TATGCAGAAATATGAAG
274 -TT----GA-C--T-TAGGCATACGGAGTTCAT-----TCCCA--GTCTA---AG-CATACG--G
* ** * ** * ** * * * * * **
19973311 ATGTGCCTAAACCCA-CCTACCACCCTATC-GATCC-ACGGCTTGC-GCATCCCGT-CT-CTCTC
317 A-GT-TC-ATTCCCAGTCTAAGATCGGACCAGA-CCGA-GGGTTGCGGCAGCACATGCTGGGCTC
* * ** * * ** * * *
19973370 GCCGACGTAGTGC-CCT-CC-TACTCGT-TTCGTCAGTTGGCTTAGGCAT--ACGGAGTTCATTC
377 G--GGCAT-GTGCTGGTGCCGCATTTTTCTTCGTC-G-GGGC--A-CCATCGTCGGAG--CA-T-
* * ** * *** * * ** **
19973429 CCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACC
430 -C-GTC---G--GAGA--A-CCTGACCG--GCGACATTGGGGTT-TC-G-ACG-ATCGGGGGGGC
*** * * * * * *
19973494 CGATCGATCCCCGACTTGCGCATC-TCGCCCCTCTGGCCTGCTGAGCGCCCGCACGGTCATTTCG
479 CGGGGGGT----G---TGCGCA-CAT-G---ATGT-G-C-GATG-G-G--TGC-TGGT-A---C-
* * * **** * * * * ** ** **
19973558 TTAGTTG-GCTTAGGCATACGGAGTTC-ATTCC-CAGTCTAAGCATGCAGAGTTCATTCCCAGTC
519 TT-G--GCCCTTA--TAT-TGGCCCCCTATCCCTCA-TCAAACCTTG-AGAACTCACACCCCCT-
* * ** * * * * **** *
19973620 T-AAGATCA---GACCGGTTCGA-AGATTACGGCAGCACATGCTGGGCTCGGGCATGTG-CTG--
575 TAAAGAGCATTTGA--GATTTTACAGGTT--TGCTGC-CA-G-T-AGC-CATTAAAGTGTCTGAA
* ** * *** * * * * *
19973677 GTGCTG-CATTTTTCTTCACCGGGGCACCATCGCCGGAGAA-CCTG-ACCGGCGGCATTGGGGTT
631 ATGGGGACACTTTT-TTCAAATGGTCA-CA-------A-AATCTTGTA----C-AC-TTCGAGTT
*** * ********* * ** * * ** * * * * *
19973739 CCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGC-TGCTACTTGGCCC
680 TTTA-GCT-GAATTTTTTTGTGCATG-CCA-ACA-AAAATAC-AAGGAT-CACG-T-C-T--ACC
* * *** * ** *** * * * * * * *
19973803 TTA-TATT-GGCCCCCTA-TCCCT-C-ATCAAACCATGAGAACTCAC-ACCCCCTTAAAGAGCAT
733 -AAGT-TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGC--AAAAAG--T
* * * ** * * ** * *
19973862 TTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAA--AGT-GTC-TGAAATGGGGACACTT-T
792 TTCA-A----A-A--ATCG-TGAAAAATAG--A-AAACGAGTCGTCTTGCCAT---GAAACTTCA
** * * * ** * * * ** * ** **** *
19973921 TTTCAAATGCTCACA-AAATC-TAGTACACTTCGAGTTT-TTAG-C-TGAATTTTTTTTTGG-AA
842 CGT-GAAGGCTTA-AGGGACCATTGT--A--T-GAATTTACAAGCCATAAAAATGGCATTGGCAC
*
19973980 GCCAAC
900 G-C-AG
* * * * ** *** *** * **** **
19973986 AAAAAT-ACAGGGATCATGTCT--ACCAAGTTTGGGGACAAAACTCCATCCGAAAAAATTTTAAA
1 AAATATGA-A--GAT-GTGCCTAAACCCA-CCT-ACCACCCTA-TCGATCC----ACGGCTT-GC
** * * ** ***** * ******* ** ** * *
19974048 AAATCCCGAAC-CGTAAAAATTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC-CATAA
54 GCATCCCG-TCTC-T----CTGGCCGGCGTAGTGCCCGCCCG--CCCG-CCCG-CCTGCTCGT--
** * * * * * ** * ** * ***
19974111 AACTTCACG-T-G--AAGGCTTAAGG-GACCATT----GTATGAATTTACA-AGCCATAAAAATG
107 TTCGTC-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGAT-CAGA-CCAGACCGA-G
* * ** * ** ***** * * ** * *
19974166 GCATT--GGCATGTAGGAAT-ATTAAG-ATGTTCTTAAACCCACCTACCACCTTATCGAT-CCAT
167 G-GTTGCGGCA-GCAGG-ATCGGT-AGCACG--CAGAGGGGGACC--CGACC-GATCCCTGGCTT
* * ** * * *
19974226 G-GCTTGTGCATCCCGTCTATCTGACCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCG
223 GCGC--ATCCCGCCC--C--TCTGGCCGGC----TG--AG--CGCCCG--C-AC-GCTCGTTTCG
* * * * *
19974290 TGGGATGACTTAGGCATTCGGAGTTCATTCCCAGTCTAAGCATGCGGTGCTCATTCCCAGTCTAA
270 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* *
19974355 GATCGGACAAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
335 GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
** * * * **
19974420 TTCTTCCCCGGGGCACCAAT-GCCGGAGCATC-ACTGGAGAACTTGATCC-GCGGTATTGGGGTT
400 TTCTTCGTCGGGGCACC-ATCGTCGGAGCATCGTC-GGAGAACCTGA-CCGGCGACATTGGGGTT
* * **
19974482 CCGACGATCGGGGGGGCCGGGTGG-GTGCTTACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
462 TCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
19974546 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGAT
527 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
19974611 TTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCA
592 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
19974676 CAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTGTTTATGCATGCCAACAAAAATACAAGGA
657 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
19974741 TCATGTCTACCATGTTTGGGGCCAAAACTACTTCCG-AAAAATTTTAAAAAATCCCGAACCGCAA
722 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAA
* ** *
19974805 AAGGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
787 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
19974870 TAAGGGACCATTGTAAGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAG
852 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
19974922 AAATATGAAAATGTGCCTAAAGCCACCTACCACCGTATCGATCCACGGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
19974987 TCTGGCCGACGTAGTGCCTGCCCGCCCGCCCG-CT--T-GTTTGGT-GGTTGGCTTAGGCATACG
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * ***
19975047 GAGTTCATTCCTAGTTTAACATC-GAACCAGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGC
131 GAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
* * * * * *
19975111 AGAGGGGGACCTGACTGATCCAC-GACTTGCGCATCCTGCACCTCTGGCCGACTGAGCGCCCGCA
195 AGAGGGGGACCCGACCGATCC-CTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
19975175 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCAT
259 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** * * * **
19975240 TCGCAGTCTAAGA-CTGGACTGGACCAAGGGTT-AGGTAGCACATGCTGGGCTCAAGCATGTGCT
324 TCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * * * *
19975303 GGTGCCGCATTTTTCTTTG-CTTGGGCACCATCGCCGAAGCATCGCCAGAGAACCTGACCCGCGG
388 GGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGA
* * *** *
19975367 CATTGGGGTTTTGACGATCAGGGACTCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGG
452 CATTGGGGTTTCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
19975432 TACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
516 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
19975497 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
581 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
19975562 TCAAATGCTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTGTTTTGTGCATGCTAACAA
646 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
19975627 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAACTCATTCCGAAAAAATTTTAAAAAATC
711 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* *
19975692 TCGAACCGCAAAAAGTTTCAAGAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
776 TCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
19975757 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
841 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
19975820 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCGCATCCCGTCTT
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* **
19975885 TCTGGCCTGCGTAGT------------GCTAGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * ** * * ** * * *
19975938 GAATTCATTCCCATTCTAAGATCAGACCAAATTGAGGGTTACGGTAATAGGATCGATAACATGCA
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * * *
19976003 GCGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACA
196 GAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
19976068 CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACCAATCTAAGCATACGGAGTTCATTC
261 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * ** * * *
19976133 CCAGTCTAAGATCAGA-AATGATTGAAGGTTGCGGCAGCAAATGTTGGGCTCGGGCATGTGCTGG
326 CCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * ** *
19976197 TGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGATGGCAT
390 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACAT
* *
19976262 TGGGG-TTCTGATGATCGGAGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
455 TGGGGTTTC-GACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* ** *
19976326 CTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAATTCACACCCCCTTAAAGAGC
518 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
* * *
19976391 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGGCACTTTTTTA
583 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
** * * **
19976456 AAATCATCAGAAAATCTTGTACACTTTGAGTTTTTAGCTTCATTTTTTTGTGCATGCCAACAAAA
648 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
19976521 ATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCC
713 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
* * ** * * *
19976586 GAACTGTAAAAAGTTTTGAAAATCGTGAAACAATAGAAAACGGGTCGTCCCT-ACATGAAACTTC
778 GAACCGCAAAAAGTTTCAAAAATCGTGAAA-AATAGAAAACGAGTCGT-CTTGCCATGAAACTTC
* * * *
19976650 ACGTGGAAAGCTTAAAGGACCATTGTTATGAAATTTAACAAACCATAAAAATGGCATTGGCACAC
841 ACGT-GAAGGCTTAAGGGACCATTG-TATG-AATTT-ACAAGCCATAAAAATGGCATTGGCACGC
19976715 AAG
902 -AG
* *
19976718 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTA
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
19976783 TCTGGCCGGCGTAGTGCCCGCCAGTCAGCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
19976848 GAGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGATCGATAGCAGGCA
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * * *
19976913 GTGGGGGACCCGACCCAT-CCTCGGCTTGCGCATCTCGCCCCTCTAGCCGGCTGAACGCCCGGC-
196 GAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC-GCA
* * * * *
19976976 CGCTCGGTTT-GTGGGTTGACTTGGGCATACGGAGTTCATTCCCTAGTCCATGCAAACGGAGTTG
259 CGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTC
* * * * *
19977040 ATTCCCAGTCTAAGATCGGACCACACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGT
322 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
19977105 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCTGAGCATCGTCGGAGAACCTAACTGGCGG
387 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGA
** * * *
19977170 CATTGGGG-TTCTGGTGATCGGGGGGGCCGGGGGGTGGGCACATATGATGTGCGATGGGTGCTGG
452 CATTGGGGTTTC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
19977234 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCCTTAAAG
516 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCCTTAAAG
* * *
19977299 AGCATTTGAGAATTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
580 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
19977364 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACA
645 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
19977429 AAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACT-CTTCCCAAAAAAATTTTAAAAAA
710 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCGAAAAAATTTTAAAAAA
* * * * *
19977493 TCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACT
774 TCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
19977558 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
839 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
19977623 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCGCATCCCGTCTT
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
** **
19977688 TCTGGCTTGCGTAGT------------GCTAGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * ** * * ** * *
19977741 GAATTCATTCCCATTCTAAGATCAGACCAAATTGAGGGTTACGGTAATAGGATCGATAGCATGCA
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * * *
19977806 GCGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACA
196 GAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
19977871 CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACCAATCTAAGCATACGGAGTTCATTC
261 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * ** * * *
19977936 CCAGTCTAAGATCAGA-AATGATTGAAGGTTGCGGCAGCAAATGTTGGGCTCGGGCATGTGCTGG
326 CCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * ** *
19978000 TGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGATGGCAT
390 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACAT
* *
19978065 TGGGG-TTCTGATGATCGGAGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
455 TGGGGTTTC-GACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
19978129 CTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGC
518 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
* *
19978194 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTC
583 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
19978259 AAATGGTCAGAAAATCTTGTACATTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCGAA-AAA
648 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAA
* * *
19978323 AATACAAGGATCACATCTATCAAGTTTGGGGCCAAAACTCCTTGCC-AAAAAATTTTTAAAAATC
712 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCGAAAAAATTTTAAAAAATC
*
19978387 -CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT-GTCTTGCCATGAAACTT
776 TC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
19978450 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCATTGGCATGTAG
840 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
19978513 AAATATGAAGATGTTCCTAAACCCACCTACCACCATATCGATCGACGGCTTACGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
19978578 TCTGGCCGGCGTAGT--------ACCAG--C-CC-GCTCGTTTCGTCGATTGGCTTAGGCATACG
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * * * ** ** **
19978631 GAATTCATTCCCAGTCCAAGATCGGACCAGACCAAGGATTACAGTAGTGGGATCGACAGCACAAA
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
** * * * * * * **
19978696 CCGAGGGACCC-AGCCAATCCCCGGCTTGTGCATCCCGCCTCTCTGACCGAATGAGCGCCCGCAC
196 GAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
19978760 ACTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATT
260 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
** * ** * *
19978825 CCCAGTCTAAGATCAAACCAGAACGAGGGTTGCAACAGCACATGCTAGGCTCGGG-ATTTGCTGG
325 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * ** *
19978889 TGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACTTGACCGATGGCAT
390 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACAT
* *
19978954 TGGGGTTTCGATGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
455 TGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
19979019 TGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGCAT
520 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
**
19979084 TTGAGATTTTACAGGTTTGCTGCCAAAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
585 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
19979149 ATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAA
650 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAA
* * *
19979214 TACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTGCCAAAAAAATTTTAAAAAATCCC
714 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCGAAAAAATTTTAAAAAATCTC
* * * * *
19979279 GAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGACTCGTCTTGCCATGAAACTTGAC
778 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * ** *
19979344 GTGAAAGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTCACACGTAG
843 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * **
19979405 AAATATGAAGGTGTGCCTAAACCCAACTACCACCCTATCGATCCTTGGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * *
19979470 TCTGGCCGACGTAGTGCCCACCCGCCCG--C-CC-ACTCATTTCGTCAGTTGGCTTAGGCATACA
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* ** *** * *
19979531 GAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTCATGGCAGCAGAATCGGCAGCACGCA
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* *
19979596 GAGGGGGA-CCGAGCCGATCCCTGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
196 GAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
19979660 GCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTC-TT
260 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * *
19979724 CCCAGTGTAAGATCGGACCGGATCGAGGGTTAG-AGTAGCACATGTTGGGCTCGGGCATGTGCTG
325 CCCAGTCTAAGATCGGACCAGACCGAGGGTT-GCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * * * * **
19979788 GTGCTGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGACGGTA
389 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACA
* ** * *
19979853 TTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTCTGCGCACATGATGTGCAATGGGTGCTGGTAC
454 TTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
19979918 TTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTCAAAGAGC
519 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT-AAAGAGC
* * * * * *
19979982 ATTTGAAAGTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGGGGACACGTTTTTC
583 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
19980047 AAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCGAA-AAA
648 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAA
* * *
19980111 AATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACACCTTCCGAAAAAATTTTACAAAATC-
712 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* * * *
19980175 CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTCGCCATGAAACTTC
777 C-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * *
19980240 ACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
841 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
19980303 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
19980368 TC-GGTCGGCGTAGT--------GCCAG--C-CC-GCTCATTTCGTCGATTGGCTTAGGCATACG
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * * ** * *
19980420 AAATTCATTCCCAGTCCAAGATCGGACCAGACTGAGGATTACGAAAGCA-GATCGATAGCACACA
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
* * * *
19980484 -ACGTGGGACCCAGTCGATCTCCGGTTGATCCCTAGCTTGCGCATCTCGCCCCTCTGGCCGGCAG
196 GA-GGGGGA-CC---CGA---CC----GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * * * *
19980548 AGCGCCCGCACAATCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCAATCGAAGCATA
249 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * * * * *
19980613 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGTTACGACAGCACATGCTCGGCTTGG
314 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* ** * * * * *
19980678 GCATTTGCTGGTGCCATATTTTTCTTCG-CTGGGGTACCATCGTCGGAGCGTCGCCAGAGAACTT
379 GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
** * *** **
19980742 GACCGATGGCATTGGGGTTTCGGTTATCGAAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
443 GACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
*
19980807 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
508 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
19980872 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
573 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
19980937 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAA
638 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
19981002 GCCAAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGTCCAAAACACCTTCCAAAAAAAATT
703 GCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATT
* * *** *
19981067 TTAAAAAATCCCAAACCGCAAAATA-TTTCAAAAATTAAGAAAAATAGAAAACAAGTCGTCTTGC
766 TTAAAAAATCTCGAACCGCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
19981131 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCATT
830 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
19981196 GGCATGCA-
895 GGCACGCAG
* * *
19981204 AAGATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATACACGGCTTGCACATCCCGTCT
1 AA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* ** * * * *
19981269 CTCTGGCCGACGTAGTGCCCGCTTGCCCGCCCATCC-GCTCATTTCATCGGTTGGCTTAGGAATA
65 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * * **
19981333 TGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGAGTTGCAGCAGTAGGATCGACAGCACG
129 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * *
19981398 CAAAGGGGGACCTGGCCGATTCCC-GGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAACGCCCGC
194 CAGAGGGGGACCCGACCGA-TCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* ** *
19981462 ACGCTCTTTTCGTGGGTCAACTTAGGCATAGGGAGTTCATTCCCAGT-T-----TA---AG---A
258 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
19981515 -T--CAG----A-CT-GG---AG--TGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATATGCT
323 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * **
19981566 GGTGCCGTATTTTTCTTCGCCAGGGCA-C--CGT-----CA---TCGGAAAACCTGACCGGTGGT
388 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGAC
* *
19981620 ATTGGGGTTCCGACGATCGGGGGGGCCGAGGGAGTGGTGTACGCACATGATGTGCGATGGGTGCT
453 ATTGGGGTTTCGACGATCGGGGGGGCC--GGG-G-GGTGTGCGCACATGATGTGCGATGGGTGCT
**
19981685 GGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
514 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
*
19981749 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
579 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
19981814 TTTCAAATGGTCACAAAATCTTGTACACTAT-GAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
644 TTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
19981878 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTGAAAA
708 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
19981943 ATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAAC
773 ATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
19982008 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-A
838 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
*
19982072 A
903 G
*
19982073 AAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCT
1 AA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
19982138 CTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCG-CT-CAT--TTT-GTCGGTTGGCTTAGGCATA
65 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGC-TCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * ** *
19982198 CAGAGTTCATTCCAAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCATG
129 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * *
19982263 CAGAGAGGGACCCGATCGAT-CCTCGGCATGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGC
194 CAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
** *
19982327 ACGCTCGTTTCGAT-GGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCGTACGGAGTTC
258 ACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* ** * * *
19982391 ATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTGACACCACATGCTGGGCTCGGGCATGTGC
322 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * * * *
19982456 TGGTGCCGAATTTTTCTTCGTCGAGGCACCATCGTCGGGGCATCATAGGAGAACCTGACCGACGG
387 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGA
* * *
19982521 CATTGGGGTTTCGGCGATC-GGGGGGCCGGGGGGTTTGTGTGCACATGATGTGCAATGGGTGCTG
452 CATTGGGGTTTCGACGATCGGGGGGGCCGGGGGG--TGTGCGCACATGATGTGCGATGGGTGCTG
* *
19982585 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGTGAGAACTCACTCCCCCTTAAAG
515 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
*
19982650 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTT
580 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
19982715 TTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTGGCTAAATTTTTTTGTGCATGCCAAAA
645 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAC
*
19982780 AAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
709 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
19982845 TC-CAGAACTGCAAAGAGTTTCGAAAATCGTGAAAAATAGAGAAACGAGGTCGTCTTGCCATGAA
774 TCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA-AAACGA-GTCGTCTTGCCATG-A
19982909 AACTTCACGTGAAGGCTT-AGGGACCATTGTATGAATTTTACAAGCCATAAAAATGGCATTTGGC
835 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCA-TTGGC
*
19982973 ACGTAG
898 ACGCAG
* * *
19982979 AAATAATGAAGATATGCCTAAACTCACCTACGCA-CCTATCGATCCAACACGACTTGCGCATCCC
1 AAAT-ATGAAGATGTGCCTAAACCCACCTAC-CACCCTATCGAT-C--CACGGCTTGCGCATCCC
* * * *
19983043 GTCTCTCTGGCCGACGTAGTG-CCGTCCGCCCGCCGCGCC-GCATCATTTTGGTC-GTT-GCTTC
61 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-CGCCTGC-TC-GTTTCGTCGGTTGGCTT-
* * * * * *
19983104 AGGC-TACAGAGTT-AGTCCCAGTCTAAGCATGAAACCAGA-CGAGGGTTTGCAGCAGTTAGGAT
122 AGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGG-TTGCGGCAG-CAGGAT
** * *
19983166 CGACAGCA-GCAGAGGGGGACCCGA-CG-T--CTGGGCTTTGCGCATCGCG-CCCTCTGGCCGAA
184 CGGTAGCACGCAGAGGGGGACCCGACCGATCCCT-GGC-TTGCGCATCCCGCCCCTCTGGCCG-G
* * * * * *
19983225 CTGACGCGCTCGCACAC-CATTTCGTCGTGTTTGACTTAGGCATACGCG-CTTCATTCCCAAAT-
246 CTGA-GCGCCCGCACGCTCGTTTCGT-G-GGTTGACTTAGGCATACG-GAGTTCATTCCC-AGTC
* * * * *
19983287 TAAGCATACGGACGTTCCATTCCCTAGTAATAAGAATCGGATCGGACTGAGGGTTGCGGTAGCAC
306 TAAGCATACGGA-GTT-CATTCCC-AGT-CTAAG-ATCGGACCAGACCGAGGGTTGCGGCAGCAC
* * * ** *
19983352 ATGCTGGGCTGGGGCATGTGCTGGTGCCACATTTTTCTTCGCCTAGGCACCATCGTCGAAGCATC
366 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
** * ** * ** *
19983417 ACCGGAGAACCTGACCGGCGGCATTAAGGTTCCGGTGATCGGGGGGGCCAGGAGGGGTGTCCGCA
431 GTCGGAGAACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCC-GG-GGGGTGTGCGCA
* * **
19983482 CATGATTTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
494 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
19983547 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
559 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
19983612 GTCTAAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTGTAGCTGA
624 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
19983676 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCA
689 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* *
19983741 TCC-AAAATAATTTTAAAAAATC-CAGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
754 TCCGAAAA-AATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * * * *
19983804 CGAGTTGTCTCGCCATTAAACTTCACGTGAAGGCTTAAGGGACGATTGTATAAATTTACAAGCCA
817 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
19983869 TAAAAATGGCATTGGCACGTAG
882 TAAAAATGGCATTGGCACGCAG
* * * * * *
19983891 AAATATGAAGATGTGCCTAAACCCAGCTGCCACTCTATCGATCCACAGCTTGTGCATCCCATCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * ***
19983956 TCTAGCCGACGCAGTGCCCAATCGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACG
66 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
19984017 GAG
131 GAG
19984020 CATCGCCGGA
Statistics
Matches: 18176, Mismatches: 3466, Indels: 2518
0.75 0.14 0.10
Matches are distributed among these distances:
863 2 0.00
864 1 0.00
865 163 0.01
866 5 0.00
867 2 0.00
868 39 0.00
869 221 0.01
870 49 0.00
871 181 0.01
872 59 0.00
873 127 0.01
874 30 0.00
875 8 0.00
876 11 0.00
877 4 0.00
878 2 0.00
879 56 0.00
880 14 0.00
881 1 0.00
882 262 0.01
883 5 0.00
884 8 0.00
885 78 0.00
886 26 0.00
887 18 0.00
888 256 0.01
889 227 0.01
890 514 0.03
891 594 0.03
892 1025 0.06
893 1036 0.06
894 181 0.01
895 751 0.04
896 876 0.05
897 570 0.03
898 520 0.03
899 723 0.04
900 1628 0.09
901 717 0.04
902 843 0.05
903 1093 0.06
904 327 0.02
905 282 0.02
906 83 0.00
907 404 0.02
908 148 0.01
909 139 0.01
910 335 0.02
911 795 0.04
912 103 0.01
913 79 0.00
914 55 0.00
915 100 0.01
916 136 0.01
917 153 0.01
918 205 0.01
919 14 0.00
920 42 0.00
921 137 0.01
922 27 0.00
923 23 0.00
924 10 0.00
925 25 0.00
926 23 0.00
927 21 0.00
928 15 0.00
929 12 0.00
930 19 0.00
931 27 0.00
932 37 0.00
933 46 0.00
934 37 0.00
935 42 0.00
936 37 0.00
937 32 0.00
938 39 0.00
939 21 0.00
940 29 0.00
941 31 0.00
942 16 0.00
943 25 0.00
944 5 0.00
945 8 0.00
946 6 0.00
947 1 0.00
948 15 0.00
949 13 0.00
950 8 0.00
951 18 0.00
952 22 0.00
953 30 0.00
954 24 0.00
955 15 0.00
956 10 0.00
957 7 0.00
958 9 0.00
959 8 0.00
960 16 0.00
961 18 0.00
962 10 0.00
963 5 0.00
964 8 0.00
965 4 0.00
966 7 0.00
967 1 0.00
968 3 0.00
969 2 0.00
970 5 0.00
971 5 0.00
972 3 0.00
973 12 0.00
974 9 0.00
975 22 0.00
976 19 0.00
977 10 0.00
978 5 0.00
979 2 0.00
980 3 0.00
981 1 0.00
984 1 0.00
985 15 0.00
986 17 0.00
987 2 0.00
988 11 0.00
989 18 0.00
990 18 0.00
991 11 0.00
992 1 0.00
993 11 0.00
994 8 0.00
995 3 0.00
996 13 0.00
997 21 0.00
998 8 0.00
999 16 0.00
1000 12 0.00
1001 9 0.00
1002 8 0.00
1003 5 0.00
1004 8 0.00
1005 19 0.00
1006 10 0.00
1007 1 0.00
1008 3 0.00
1009 14 0.00
1010 1 0.00
1011 5 0.00
1012 1 0.00
1014 3 0.00
1016 1 0.00
1017 5 0.00
1018 1 0.00
1020 4 0.00
1021 3 0.00
1022 3 0.00
1023 9 0.00
1024 431 0.02
1025 594 0.03
1026 675 0.04
1027 685 0.04
1028 496 0.03
1029 666 0.04
1030 556 0.03
1031 505 0.03
1032 558 0.03
1033 503 0.03
1034 373 0.02
1035 441 0.02
1036 515 0.03
1037 473 0.03
1038 389 0.02
1039 451 0.02
1040 464 0.03
1041 358 0.02
1042 469 0.03
1043 403 0.02
1044 337 0.02
1045 384 0.02
1046 340 0.02
1047 313 0.02
1048 576 0.03
1049 236 0.01
1050 437 0.02
1051 334 0.02
1052 396 0.02
1053 203 0.01
1054 255 0.01
1055 544 0.03
1056 287 0.02
1057 244 0.01
1058 243 0.01
1059 316 0.02
1060 390 0.02
1061 277 0.02
1062 199 0.01
1063 247 0.01
1064 153 0.01
1065 247 0.01
1066 271 0.01
1067 218 0.01
1068 273 0.02
1069 226 0.01
1070 126 0.01
1071 234 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
GAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACATT
GGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA
CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
Found at i:19968621 original size:26 final size:26
Alignment explanation
Indices: 19968592--19968644 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19968582 GTTAACTTTG
*
19968592 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19968618 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19968644 G
1 G
19968645 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19969510 original size:26 final size:26
Alignment explanation
Indices: 19969474--19969526 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19969464 GTTGACTTAG
*
19969474 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19969500 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19969526 G
1 G
19969527 ATTGAATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:19970415 original size:26 final size:26
Alignment explanation
Indices: 19970385--19970437 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19970375 GTTGACTTAG
*
19970385 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19970411 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19970437 G
1 G
19970438 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19971783 original size:716 final size:712
Alignment explanation
Indices: 19970411--19972630 Score: 3060
Period size: 716 Copynumber: 3.1 Consensus size: 712
19970401 CCCAGTCTAA
* ** *
19970411 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGTGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
* * * * * **
19970476 CTCGAGCATTTGCTGGGGCCGCATTTTTCTTCGCTAGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCTCGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
19970541 ACCTGACCGGCAGCATTGAGGTTCAGGCGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGG-GAACGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
19970606 GATGGGTGCT-GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACTTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACA
* *
19970669 -CCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
19970733 GGGACACTTTCTTCAAATGGTCAGAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTAT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
19970798 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGG-CAAAAACTCCTTCCAAAAGA
389 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAA-A
* * *
19970862 ATTTGAAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
452 ATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
19970927 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACA
* *
19970992 TTGGCATGCAGAAATATTAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
19971057 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCTTGCCCGCCTGCTCGTTTCGTCGGTTGGC
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGC--GCCCGCCTGCTCGTTTCATCGGTTGGC
19971122 TTAG
709 TTAG
* * * *
19971126 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
* *
19971191 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCCGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCTCGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
19971256 ACCTGACCGACGGCATTGGGGTTCCGGTGAACGGGGGGTCGGGGGGTGTGCGCACATGATGTACG
131 ACCTGACCGACGGCATTGGGGTTCCGG-GAACGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
19971321 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATTAAACCTCGAGAACTCAAAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACAC
* *
19971386 CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCT-AAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
19971450 GGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATATTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
19971515 CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAATG
390 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAT-
* *
19971580 TTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
454 TTCAAAAAATCCCGAACCGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
19971644 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGACAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACAT
*
19971709 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
19971774 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCC-CGCCCGCCCGCTCGCTCATTTCATCGGTTGGC
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCG--C-CT-GCTCGTTTCATCGGTTGGC
19971838 TTAG
709 TTAG
*
19971842 GCATACGGAGTTCATTCCCAATCTAAGCATGCGAAGTTCATTCCCAGTCTAAGAGTGGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C----A---GACC--A-
** * * *
19971907 CAGGGGTTACGGCAGCACATGCTGGGCTTTGGCATGTCCTGATGTCGTATTTTTCTTCG-TCGAG
42 -A-GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCTCG-G
** * * * *
19971971 GCACCATCGTCGGAGCATCACCAGAGAACCTGACCGATGGTATTGGGGTTCCGGCAATCGGGGGG
104 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGGAA-C-GGGGG
* *
19972036 GCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTA
167 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
19972101 TTCCTCAGCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
232 TACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
19972166 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
297 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
19972231 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATTCAA-GATCATGTCTACCAAGT
362 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
* * * * *
19972295 TTGCGGCCAAAACTCCTTCCGAAAAAATTGCAAAAATTCTCGAACC-TCAAAAAGTTTCAAAAAT
427 TTGGGGCCAAAAATCCTTCCG-AAAAATTTCAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAAT
* *
19972359 CGTGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
490 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
19972424 ATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGATGATGTGCCTCAAGCCACG
555 ATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
19972489 AACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCC-CGCC
620 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCC
* * *
19972553 CGCCCGCTCGATTT-TTTGGTTGGCTTAG
685 CGCCTGCTCG-TTTCATCGGTTGGCTTAG
** * * *
19972581 GCATACAAAGTTCATTCCCACTCTAAGATCAGACCAAACCGAGGGTTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACG
19972631 TGAGCAGGAT
Statistics
Matches: 1340, Mismatches: 121, Indels: 90
0.86 0.08 0.06
Matches are distributed among these distances:
712 5 0.00
713 8 0.01
714 41 0.03
715 169 0.13
716 401 0.30
717 62 0.05
718 4 0.00
720 1 0.00
721 1 0.00
723 1 0.00
725 1 0.00
727 1 0.00
728 1 0.00
730 1 0.00
732 1 0.00
734 1 0.00
735 2 0.00
737 5 0.00
738 2 0.00
739 41 0.03
740 4 0.00
741 6 0.00
742 99 0.07
743 391 0.29
744 91 0.07
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCTCGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGGAACGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAATTT
CAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAG
Found at i:19972558 original size:743 final size:738
Alignment explanation
Indices: 19971134--19972607 Score: 2244
Period size: 743 Copynumber: 2.0 Consensus size: 738
19971124 AGGCATACGG
* *
19971134 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGGACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACAGCAGCACATGCTGGGCTCGGGCA
* * ** *
19971199 TGTGCTGGTGTCACATTTTTCTTCGCCCGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
66 TGTCCTGATGTCACATTTTTCTTCGCCCGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACC
* * *
19971264 GACGGCATTGGGGTTCCGGTGAACGGGGGGTCGGGGGGTGTGCGCACATGATGTACGATGGGTGC
131 GACGGCATTGGGGTTCCGGTCAACGGGGGGCCGGGGGGTGTGCACACATGATGTACGATGGGTGC
**
19971329 TGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATTAAACCTCGAGAACTCAAACCCCCTTAA
196 TGGTACTTGGCCCTTATATTGGCCCCCTATACCTCAGCAAACCTCGAGAACTCAAACCCCCTTAA
* *
19971394 AGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTAAATGGGGACACTTT
261 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACACTTT
* *
19971459 TTTGAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATATTTTTGTGCATGCCAAC
326 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATATTTTTGTGCATGCCAAC
* **
19971524 AAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAATGTTTAAAAAA
391 AAAAATAAAAGGATCACGTCTACCAAGTTTGCGGCCAAAAATCCTTCCGAAAAATGTGCAAAAAA
*
19971589 TCCCGAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
456 TCCCGAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
19971654 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGACATTGGCACGCAG
521 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCACGCAG
*
19971719 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
586 AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
19971784 TCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCATCGGTTGGCTTAGGCATACG
651 TCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCG---ATTT-ATCGGTTGGCTTAGGCATACA
*
19971849 GAGTTCATTCCCAATCTAAGCATGCGA
712 AAGTTCATTCCCAATCTAAGCATGCGA
* * * * **
19971876 AGTTCATTCCCAGTCTAAGAGT-GGACCGGATCAGGGGTTACGGCAGCACATGCTGGGCTTTGGC
1 AGTTCATTCCCAGTCTAAGA-TCGGACCAGACCAAGGGTTACAGCAGCACATGCTGGGCTCGGGC
** *
19971940 ATGTCCTGATGTCGTATTTTTCTTCG-TCGAGGCACCATCGTCGGAGCATCACCAGAGAACCTGA
65 ATGTCCTGATGTCACATTTTTCTTCGCCCG-GGCACCATCGTCGGAGCATCACCAGAGAACCTGA
* * *
19972004 CCGATGGTATTGGGGTTCCGG-CAATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGG
129 CCGACGGCATTGGGGTTCCGGTCAA-C-GGGGGGCCGGGGGGTGTGCACACATGATGTACGATGG
* * **
19972068 GTGCTGGTACTTGGCCCTTATATTGGCCTCCTATTCCTCAGCAAACCTCGAGAACTCGCACCCCC
192 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCAGCAAACCTCGAGAACTCAAACCCCC
19972133 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGAC
* *
19972198 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATG
321 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATATTTTTGTGCATG
** * *
19972263 CCAACAAAAATTCAA-GATCATGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAAAT-TGC
386 CCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGCGGCCAAAAATCCTTCCG-AAAAATGTGC
* * * *
19972326 AAAAATTCTCGAACC-TCAAAAAGTTTCA-AAAATCGTGAAAAATATAAAACGAGTCGTCTTGCC
450 AAAAAATCCCGAACCGT-AAAAAGTTT-AGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
19972389 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTG
513 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTG
* * * * * *
19972454 GCATGCAGAAATATGATGATGTGCCTCAAGCCACGAACCACCCTATCGATCCATGGCTTGCGCAT
578 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCAT
* *
19972519 CCCGTCTCTCTGG-CTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGATTTTTTGGTTGGCTTAGGC
643 CCCGTCTCTCTGGTC-GGCGTAGTGCCCGCCCGCCCGCCCGCTCGATTTATCGGTTGGCTTAGGC
*
19972583 ATACAAAGTTCATTCCCACTCTAAG
707 ATACAAAGTTCATTCCCAATCTAAG
19972608 ATCAGACCAA
Statistics
Matches: 664, Mismatches: 59, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
739 36 0.05
740 4 0.01
741 4 0.01
742 129 0.19
743 400 0.60
744 91 0.14
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (738 bp):
AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACAGCAGCACATGCTGGGCTCGGGCA
TGTCCTGATGTCACATTTTTCTTCGCCCGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACC
GACGGCATTGGGGTTCCGGTCAACGGGGGGCCGGGGGGTGTGCACACATGATGTACGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATACCTCAGCAAACCTCGAGAACTCAAACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATATTTTTGTGCATGCCAAC
AAAAATAAAAGGATCACGTCTACCAAGTTTGCGGCCAAAAATCCTTCCGAAAAATGTGCAAAAAA
TCCCGAACCGTAAAAAGTTTAGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGATTTATCGGTTGGCTTAGGCATACAAAGT
TCATTCCCAATCTAAGCATGCGA
Found at i:19972715 original size:26 final size:26
Alignment explanation
Indices: 19972682--19972733 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19972672 CCCGGCTTGC
19972682 GCATACGGAGTTCATTCCCAGGCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
*
19972708 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
19972734 CGTGGAACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:19973600 original size:26 final size:26
Alignment explanation
Indices: 19973571--19973623 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19973561 GTTGGCTTAG
*
19973571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
19973597 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19973623 G
1 G
19973624 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19974952 original size:742 final size:727
Alignment explanation
Indices: 19973566--19975057 Score: 2245
Period size: 742 Copynumber: 2.0 Consensus size: 727
19973556 CGTTAGTTGG
*
19973566 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCAGAC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCAGAGCTCATTCCCAGTCTAAGATCAGAC
** ** *
19973631 CGGTTCGAAGATTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCAC
66 AAGACCGAAGATTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
19973696 CGGGGCACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
131 CGGGGCACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
19973761 GGTGTGCACACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
196 GGTGTGCACACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
19973826 TCAAACCATGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
261 TCAAACCATGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAG
*
19973891 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTAGTACACTTCGAGT
326 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTAGCACACTTCGAGT
* * * *
19973956 TTTTAGCTGAATTTTTTTTTGGAAGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGA
391 TTTTAGCTGAATTTGTTTATGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGA
* * *
19974021 CAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTCAAAAATTGTGAAAAA
456 CAAAACTACATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTCAAAAATTATGAAAAA
*
19974086 TAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
521 TAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTA
* * * * * * * *
19974151 CAAGCCATAAAAATGGCATTGGCATGTAGGAATATTAAGATGTTCTTAAACCCACCTACCACCTT
586 AAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCGT
* * *
19974216 ATCGATCCATGGCTTGTGCATCCCGTCTATCTGACCGGCGTAGTGCCCGCCCGCCCGCCCGCCTG
651 ATCGATCCACGGCTTGCGCATCCCGTCTATCTGACCGACGTAGTGCCCGCCCGCCCGCCCG-CT-
19974281 CTCGTTTCGTGGGATGA
714 -T-GTTTCGT-GGATGA
* * * *
19974298 CTTAGGCATTCGGAGTTCATTCCCAGTCTAAGCATGCGGTGCTCATTCCCAGTCTAAGATCGGAC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCAGAGCTCATTCCCAGTCTAAGATCAGAC
* * * * *
19974363 AAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCCC
66 AAGACCGAAGATTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
* *
19974428 CGGGGCACCAATGCCGGAGCATCACTGGAGAACTTGATCC-GCGGTATTGGGGTTCCGACGATCG
131 CGGGGCACC-AT--C---G---C-C-GGAGAACCTGA-CCGGCGGCATTGGGGTTCCGACGATCG
* ** *
19974492 GGGGGGCCGGGTGG-GTGCTTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
184 GGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCC
*
19974556 CCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGT
249 CCCTATCCCTCATCAAACCAT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
19974620 TTACTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTT
313 TTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTA
*
19974685 GCACACTTCGAGTTTTTAGCTGAATTTGTTTATGCATGCCAACAAAAATACAAGGATCATGTCTA
378 GCACACTTCGAGTTTTTAGCTGAATTTGTTTATGCAAGCCAACAAAAATACAAGGATCATGTCTA
* * * *
19974750 CCATGTTTGGGGCCAAAACTACTTCCG-AAAAATTTTAAAAAATCCCGAACCGCAAAAGGTTTCA
443 CCAAGTTTGGGGACAAAACTACATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA-ATTTCA
* *
19974814 AAAATTATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
507 AAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACC
*
19974879 ATTGTAAGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAAG
572 ATTGTAAGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAAC
* * *
19974944 CCACCTACCACCGTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCC
637 CCACCTACCACCGTATCGATCCACGGCTTGCGCATCCCGTCTATCTGACCGACGTAGTGCCCGCC
* * *
19975009 CGCCCGCCCGCTTGTTTGGTGGTTGG
702 CGCCCGCCCGCTTGTTTCGTGGATGA
19975035 CTTAGGCATACGGAGTTCATTCC
1 CTTAGGCATACGGAGTTCATTCC
19975058 TAGTTTAACA
Statistics
Matches: 685, Mismatches: 61, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
732 124 0.18
733 2 0.00
735 1 0.00
737 26 0.04
738 7 0.01
739 1 0.00
741 33 0.05
742 443 0.65
743 46 0.07
744 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (727 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCAGAGCTCATTCCCAGTCTAAGATCAGAC
AAGACCGAAGATTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
CGGGGCACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
GGTGTGCACACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCATGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTAGCACACTTCGAGT
TTTTAGCTGAATTTGTTTATGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGA
CAAAACTACATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTCAAAAATTATGAAAAA
TAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTA
AAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCGT
ATCGATCCACGGCTTGCGCATCCCGTCTATCTGACCGACGTAGTGCCCGCCCGCCCGCCCGCTTG
TTTCGTGGATGA
Found at i:19975235 original size:26 final size:26
Alignment explanation
Indices: 19975199--19975251 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19975189 GTTGACTTAG
*
19975199 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
19975225 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19975251 G
1 G
19975252 ACTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19976126 original size:26 final size:26
Alignment explanation
Indices: 19976090--19976142 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19976080 GTTGACTTAG
19976090 GCATACAGAGTTCATTACCAATCTAA
1 GCATACAGAGTTCATTACCAATCTAA
* * *
19976116 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAATCTAA
19976142 G
1 G
19976143 ATCAGAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAATCTAA
Found at i:19977929 original size:26 final size:26
Alignment explanation
Indices: 19977893--19977945 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19977883 GTTGACTTAG
19977893 GCATACAGAGTTCATTACCAATCTAA
1 GCATACAGAGTTCATTACCAATCTAA
* * *
19977919 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAATCTAA
19977945 G
1 G
19977946 ATCAGAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAATCTAA
Found at i:19978819 original size:26 final size:26
Alignment explanation
Indices: 19978783--19978835 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19978773 GTTGACTTAG
19978783 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
19978809 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19978835 G
1 G
19978836 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19979734 original size:25 final size:26
Alignment explanation
Indices: 19979683--19979734 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19979673 GTTGACTTAG
19979683 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
19979709 GCATACGGAGTTC-TTCCCAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
19979734 G
1 G
19979735 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:19984573 original size:607 final size:607
Alignment explanation
Indices: 19983411--19984626 Score: 1898
Period size: 607 Copynumber: 2.0 Consensus size: 607
19983401 CCATCGTCGA
* * * *
19983411 AGCATCACCGGAGAACCTGACCGGCGGCATTAAGGTTCCGGTGATCGGGGGGGCCAGGAGGGGTG
1 AGCATCACCGGAGAACCTGACCGGCGACATTAAGGTTCCGGCGATCGGGCGGACCAGGAGGGGTG
* * * *
19983476 TCCGCACATGATTTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
66 TCCGCACATGATGTACAATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAA
**
19983541 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
131 AAATCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
19983606 TAAAGTGTCTAAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTA
196 TAAAGTGTCTAAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTA
* * * *
19983671 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
261 GCTGAATTTTTTTGTCCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
19983736 CTCCATCCAAAATAATTTTAAAAAATCCAGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGA
326 CTACATCCAAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
* * * *
19983801 AAACGAGTTGTCTCGCCATTAAACTTCACGTGAAGGCTTAAGGGACGATTGTATAAATTTACAAG
391 AAACGAGTCGTCTCGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAG
* * *
19983866 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAGCTGCCACTCTATCG
456 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
19983931 ATCCACAGCTTGTGCATCCCATCTCTCTAGCCGACGCAGTGCCCAATCGCCCGCCCGCTCGTTTC
521 ATCCACAGCTTGCGCATCCCATCTCTCTAGCCGACGCAGTGCCCAATCGCCCACCCGCTCGTTTC
19983996 GTCGGTTGGCTTAGGCATACGG
586 GTCGGTTGGCTTAGGCATACGG
* * ** *
19984018 AGCATCGCCGGAGATCCTGACCGGCGACATTGGGGTTCCGGCGATCGGGCGGA-C-TGAGGGGGT
1 AGCATCACCGGAGAACCTGACCGGCGACATTAAGGTTCCGGCGATCGGGCGGACCAGGA-GGGGT
* * *
19984081 GTGCGCACATGATGTGCAATGGGTACTGGTACTTGGCCATTATATTGGTCCCCTATCCCTCATCA
65 GTCCGCACATGATGTACAATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
* *
19984146 AAAATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCA
130 AAAATCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
19984211 TTAAAGTTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTT
195 TTAAAGTGTCTAAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAG-TT
*
19984275 TTAGCTGAATTTTTTTGTCCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
258 GTAGCTGAATTTTTTTGTCCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** *
19984340 AAACTACTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCGAAAATCATGAAAAAT
323 AAACTACATCCAAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* *
19984405 AGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
388 AGAAAACGAGTCGTCTCGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATAAATTTAC
* **
19984470 AAGGCATAAAAATGGCATTGGCATTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
453 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
19984535 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGTGCCCAATCGCCCACCCGCTCGT
518 TCGATCCACAGCTTGCGCATCCCATCTCTCTAGCCGACGCAGTGCCCAATCGCCCACCCGCTCGT
*
19984600 TTCGTCGGTTGGCTTAGGCTTACGG
583 TTCGTCGGTTGGCTTAGGCATACGG
19984625 AG
1 AG
19984627 TTCATTCCTA
Statistics
Matches: 552, Mismatches: 54, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
605 4 0.01
606 179 0.32
607 369 0.67
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (607 bp):
AGCATCACCGGAGAACCTGACCGGCGACATTAAGGTTCCGGCGATCGGGCGGACCAGGAGGGGTG
TCCGCACATGATGTACAATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAA
AAATCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTAAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTA
GCTGAATTTTTTTGTCCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTACATCCAAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
AAACGAGTCGTCTCGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAG
CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACAGCTTGCGCATCCCATCTCTCTAGCCGACGCAGTGCCCAATCGCCCACCCGCTCGTTTC
GTCGGTTGGCTTAGGCATACGG
Found at i:19985698 original size:26 final size:26
Alignment explanation
Indices: 19985662--19985714 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19985652 GTTGACTTAG
*
19985662 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19985688 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19985714 G
1 G
19985715 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19986591 original size:26 final size:25
Alignment explanation
Indices: 19986553--19986604 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19986543 GTTGACTTAG
19986553 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
**
19986578 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
19986604 G
1 G
19986605 GTCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:19987483 original size:26 final size:26
Alignment explanation
Indices: 19987447--19987499 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19987437 CTTGACTTAG
19987447 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
19987473 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
19987499 G
1 G
19987500 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:19988646 original size:894 final size:888
Alignment explanation
Indices: 19984020--19989149 Score: 6372
Period size: 894 Copynumber: 5.8 Consensus size: 888
19984010 GCATACGGAG
* * * * **
19984020 CATCGCCGGAGATCCTGACCGGC-GACATTGGGGTTCCGGCGATCGGGCGGACTGAGGGGGTGTG
1 CATCGCCGGAGAACCTGACTGGCAG-CACTAGGGTTCCGGCGATCGGGATG-C-G-GGGGGTGTG
* * * * *
19984084 CGCACATGATGTGCAATGGGTACTGGTACTTGGCCATTATATTGGTCCCCTATCCCTCATCAAAA
62 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
19984149 ATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTA
127 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
19984214 AAGTTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAG
192 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
* * *
19984279 CTGAATTTTTTTGTCCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
257 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
* * * * *
19984344 TACTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAA
322 TCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
19984409 AACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGG
387 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
19984474 CATAAAAATGGCATTGGCATTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
452 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
19984539 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGTGCCCA---ATCGCCCACCCGCTCGTT
517 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCGCTCGCCCGCCCGCTCATT
* * ** * *
19984601 TCGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAAGGTTGC
582 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGAC-GAGGGTTGT
* * * * * * * *
19984666 AGTAGTAGGATCGACAGCACGTAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCTCCCAT
646 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
** * * * ** * *
19984731 CTGGCCAACTGAGCGCCCGTACGCTTGTTTCGTTTGTTGACATAGGCATGCGGAGTTCATTCCCA
711 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
19984796 GTCTAAGCATATGGAGTTCATTCCCAGTATAAGATAGGACCGGA-TCGATGGTTACGGCAGCACA
776 GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTGCGACAGCACA
* * * *
19984860 TACTGGGCTCAGGCATGAGCTGGTGCCGTATTTTTCTTCGTCGGGGCAC
840 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* ** * *
19984909 CATCGCCGGAGAACCTGACCGGTGGCA-TTGGCGTTCCGGTGATC-----G-GGGGGGTGTGCGC
1 CATCGCCGGAGAACCTGACTGGCAGCACTAGG-GTTCCGGCGATCGGGATGCGGGGGGTGTGCGC
* * *
19984967 ACATGATGTGTGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
65 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
19985032 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
130 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
19985097 TGTTTGAAATGGGGACACTTTTTTCAAATAGTCACAAAAACTTGTACACTTTGAGTTTTTAGCTG
195 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
* * * * * * *
19985162 AATTTTTTTTTGCATACCAACAAAAATACAAGGATCCCATCTACCAAGTTAGGGACCGAAACTCC
260 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC
* * *
19985227 TTTC-AAAAAATTTTAAAAAATCTTGAACCG-CAAAAGATTTTAAAAATCGTGAAAAATAGAAAA
325 TTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAA
* * * *
19985290 TGAGTCGTCTTACCATGAAACATCACGTGAAGGCTTAAGGGACCAATTGT-TCAATTTACAAGCC
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-ATTGTATGAATTTACAAGCC
*
19985354 ATAAAAAATGGCATTGGCATTGCAGAAGATATGAAGATGTGCCTAAA-CCACCTACCA-CCTATC
453 AT-AAAAATGGCATTGGCA-TGTAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
19985417 AATCCACAGCTTTGCGCATCCTCGTCTCTCTGGTCGACGTAGTGCCCGGCCGTTCGCCCGCCCGC
515 GATCCACGGC-TTGCGCATCC-CGTCTCTCTGGCCGACGTAGTGCCC-ACCGCTCGCCCGCCCGC
* * * *
19985482 TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGCACCGGACCAAGG
577 TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGA-CGAGG
* * * * ** *
19985547 GTTGTGGTAGCAAGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCAACTTACGCATCCCG
641 GTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * *
19985612 CTCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCAT
706 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
19985677 TCCCAGTGTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAG
771 TCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAG
* * * *
19985742 CACATGCTAGGCTCAGGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCAC
836 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * ** * * * * * *
19985795 CATCGTCAGAGAACCTAACCCGCGGCACTCGGGTTTCGACAATCGGGGGTGCCGGGGGGTGTGCG
1 CATCGCCGGAGAACCTGACTGGCAGCACTAGGGTTCCGGCGATC-GGGATG-CGGGGGGTGTGCG
* * *
19985860 CACCTGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCT
64 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
19985925 CGAGAACTCACACCCCCTTAAAGAGCATTTCAAGA-TTTAGATGTTTGCTGCCAGTAGCCATTAA
129 CGAGAACTCACACCCCCTTAAAGAGCATTT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
19985989 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGTGAGTTTTTAGC
193 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
* * *
19986054 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCAACCCAGTTTGGGGCCAAAAAT
258 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT
* ** * *
19986119 CC-TTCAGAAAAAAATTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGGAAAATAGAA
323 CCTTTC-GAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
19986183 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGC
387 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** * * *
19986248 CATAAAAATGGCATTGGCACATAGAAATATGATGAGGTGCCTAAACCCACCTATCACCCTATCGA
452 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
19986313 TCCACGGCTTACGCAT-CCGTCTCTCTGGCCGACGAAGTGCCCGCCCGCCCGTCCGCCC-CTTCA
517 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-ACCGCTCGCCCGCCCGC-TCA
* * * *
19986376 TTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATTGAGGGTT
580 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGA-CGAGGGTT
* * * * *
19986441 GTGGCAGCAGGATCGGTAGCACACAGAGGGGAACCC-AGCTGATCCCCGGCTTGCGCATCCTGCC
644 GTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCC
* * * *
19986505 CCTTTGGCCGGTTGAGCGCCCACACGCTCGTTTTGTGTGTTGACTTAGGCATAC-GAGTTCATTC
708 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTC
* ** * * * **
19986569 CCAGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGGTCGAACCGGACCGAGGG-TGCGGTAGCA
773 CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCA
* *
19986633 CATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTCTCTTCGTCGGGGCAC
838 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * * ** *
19986684 CATCGCCGGAGCATCACCGGAGAACCTGACCGATGGCA-TAGGGGTTCCGACGATTGGGGGGGCA
1 CATCGCCGGAG-A--ACC--TG-A-CTG-GC-A--GCACTA-GGGTTCCGGCGA-TCGGGATGCG
* *
19986748 GGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGG-CCCCTATCCC
53 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
19986812 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTTCCAG
118 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* ** * *
19986877 TAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCACGTGGCCACAAAATCTTGTACACTTCG
183 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
* * * * **
19986942 AGTTTTTAGCTGAATTCTTTTGTCCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGG
248 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGG
* * *
19987007 GGCCAAAACTAC-TTCCAATAAAGTTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATG
313 GGCCAAAACTCCTTTCGAA-AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATG
* *
19987071 AAAAATAGAAAACGAGTCATCTTGCCATGAAACATT-ACGTGAAGGCTTAAGGGACAATTGTATG
377 AAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
19987135 AATTTACAAGCTATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTAC
441 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
19987200 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTCGACATAGTGCCCA--TC-CGCCC
506 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCGCTCGCCC
* * * * ** * **
19987262 GCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTTTGATCAAACTGGA
571 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGA
* * *
19987327 CTGAGGGTTGTGGCAACAGGATCGGCAG-ATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
636 C-GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * * * * * * *
19987391 ATCCTGTCCCTCTGGCCGACTGCGCGCCCGCACGTTTGTTTCGTGGCTTGACTTAGGCATATGGA
700 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGA
* * * *
19987456 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTTTAAGATCAGACTGGATTGAGGGTTG
765 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTG
* *
19987521 C-AGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCAC
830 CGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * * * * * *
19987580 CATCGCCGGAGCATC-GCCGTAGAACCTGACTGGTGGCATT--GGCGTTCCGGTGAT-CGGGGGG
1 CATCGCCGGAGAACCTGAC-TGGCAGC--ACTAG-GG--TTCCGGCGAT-CGG-GATGCGGGGGG
* * *
19987641 TGTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATC
58 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
19987706 AAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCC
123 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
19987771 ACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
188 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* *
19987836 TTAGCTGAATTTTTTTTGTGCATGCCAATAAAAATACAAGGATCCCATCTACCAAGTTTGGGGCC
253 TTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC
* ** **
19987901 AAAACTCCTTTCGAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAA
317 AAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
*
19987966 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTA
382 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
19988031 CAAGCCATAAAAATGGCATT-GCATGTACAATTATGATGATGTGCCTAAACCCACCTACCAGCCT
447 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
** * * * * *
19988095 ATCGATCCATAGCTTGCGCATCCCATCTCTCTGGTCGGCGTAGTGCCCACCTGTTTGCCCGCCCG
512 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACC-GCTCGCCCGCCCG
*
19988160 CTCATTTCGTCGGTTGGCTTCA-GCATACGGAGTTCATTCCCAGTATAAGATCACACCAGATCGA
576 CTCATTTCGTCGGTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGA-CGA
** * * **
19988224 GGGTTGCAGCAGTAGGATCGGCAGCACGTAGAGGGGGAGTCGACCGATCCCCGGCTTGCGCATCC
639 GGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
*
19988289 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCACACGGAGTTC
704 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTC
* * *
19988354 ATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGAT
769 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGAC
*
19988419 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCAC
834 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * *
19988474 CATCGCTGGAGAACCTGATTGGCAGCACTAGGGTTCCGGTGATCGGGAATGCCGGGGGGGTGTGC
1 CATCGCCGGAGAACCTGACTGGCAGCACTAGGGTTCCGGCGATCGGG-ATG-C-GGGGGGTGTGC
* * *
19988539 GCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACGTCATC-GAC
63 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAAC
* *
19988603 CTCGAGAACTCACA-CCCCTTAGAGAGCATCTTCAGATTTTTACA-GTTT-CTGCCAGTAGCCAT
127 CTCGAGAACTCACACCCCCTTAAAGAGCAT-TTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCAT
*
19988665 TAAAGTGTCCTGAAATGGGGACAC-TTTTTC-AATGGTCA-AAAATCTTGTAC-C-GTGAGTTTT
190 TAAAGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
* ** *
19988725 TAGCTGAATTTTTTTGT-CATGCC-ATAAAAA-ACAAGAGAAT-ATGTCAACCAAGTTTGGGGCC
254 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG-G-ATCACATCTACCAAGTTTGGGGCC
* * * *
19988786 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAGTCGTGGAAAA
317 AAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
19988851 TAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGAGACCATTGTATGAATTTA
382 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
19988916 GAAGCCATAAAAATGGCATTGGCATGTAGAAATATGATGATGTGCCTAAACGCACCTACCACCCT
447 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** * * * *
19988981 ATCGATCTACGGCTTGCATATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGTCCGCCCA
512 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCAC-CGCTCGCCCGCCCG
* * * * * *
19989046 CTCGTTTGGTCGGTTGGCTTATGCATACGGAGTTCATTCCCAGTTTAAGATCGA-ATCAGACTAA
576 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-ACACCAGAC-GA
* ** * *
19989110 GGGTTGCGATAGCAGTATCGGCTA-CACGCAGTGGGGGACC
639 GGGTTGTGGCAGCAGGATCGGC-AGCACGCAGAGGGGGACC
19989150 TTGATGATCC
Statistics
Matches: 3672, Mismatches: 473, Indels: 195
0.85 0.11 0.04
Matches are distributed among these distances:
878 5 0.00
879 105 0.03
880 287 0.08
881 26 0.01
882 42 0.01
884 6 0.00
885 165 0.04
886 486 0.13
887 20 0.01
888 78 0.02
889 328 0.09
890 259 0.07
891 211 0.06
892 67 0.02
893 204 0.06
894 588 0.16
895 243 0.07
896 73 0.02
897 7 0.00
898 376 0.10
899 77 0.02
900 18 0.00
901 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
CATCGCCGGAGAACCTGACTGGCAGCACTAGGGTTCCGGCGATCGGGATGCGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
TTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCGCTCGCCCGCCCGCTCATTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGACGAGGGTTGTGGCAG
CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
CGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
Found at i:19994945 original size:26 final size:26
Alignment explanation
Indices: 19994904--19994959 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
19994894 TGGGTTGACT
* *
19994904 TAAGCATATGGGGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19994930 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19994956 TAAG
1 TAAG
19994960 ATCAGACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19995850 original size:26 final size:26
Alignment explanation
Indices: 19995805--19995860 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
19995795 TCGGTCGACT
* * * *
19995805 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGATAATTCCAAGTC
19995831 TAAGCATACAGAGATAATTCCAAGTC
1 TAAGCATACAGAGATAATTCCAAGTC
19995857 TAAG
1 TAAG
19995861 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGATAATTCCAAGTC
Found at i:19996719 original size:26 final size:26
Alignment explanation
Indices: 19996682--19996789 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
19996672 GGGGTTAACT
*
19996682 TAAGCATGCGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19996708 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
19996734 TAAGCATACGGAGTTCACTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
19996760 TAAGCATACAGAGTTCATTCCAAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19996786 TAAG
1 TAAG
19996790 ATCAGACCAG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:19997657 original size:26 final size:26
Alignment explanation
Indices: 19997621--19997697 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
19997611 TGACTTAGGT
*
19997621 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
19997647 ATACAGAGTTCATTTCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
* *
19997673 ATGCAGAGTCCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
19997698 ATCAGATAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:19998573 original size:26 final size:26
Alignment explanation
Indices: 19998537--19998589 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19998527 GTTGACTTAC
*
19998537 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
*
19998563 GCATATGGAGTCCATTCCTAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
19998589 G
1 G
19998590 ATCGATCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTCCATTCCCAGTCTAA
Found at i:19998733 original size:184 final size:185
Alignment explanation
Indices: 19998378--19998794 Score: 527
Period size: 184 Copynumber: 2.3 Consensus size: 185
19998368 GTTGGCTTAG
* * * *
19998378 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATTGACA
1 GCATACGGAGTCCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGACA
* * * *
19998443 GCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTACGCATCCCGCCCCTCTAGTCGGCTGAGCAC
66 GCACGCAGAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCCACCCCTCTAGGCGGCTGAGCAC
* *
19998508 CCGAACGCTCGTTTCGTGGGTTGACTTACGCATATGGAGTTCATTCCCAGTCTAA
131 CCGAACGCTCGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
* * **
19998563 GCATATGGAGTCCATTCCTAGTCTAAGATC-GATCCAGA-CTAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTCCATTCCTAGTCTAAGATCAGA-CCAGACCAAGGGTTGCAGCAGCAGGATCGAC
* ** * *
19998626 AGCACGCAGAGGGGGTCCCGGCCAATCTGCAGGTTGCGCATCCCACCCCTCT-GGCGTGCTGAGC
65 AGCACGCAGAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCCACCCCTCTAGGCG-GCTGAGC
* * *
19998690 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
129 ACCCGAACGCTCGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
19998747 ACATACGAAG-CTCATTCCTAGTCTAAGTTCAGATCGGACCGAGGGTTG
1 GCATACGGAGTC-CATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTG
19998795 TGACAGCACA
Statistics
Matches: 198, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
183 4 0.02
184 153 0.77
185 41 0.21
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTCCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCCACCCCTCTAGGCGGCTGAGCAC
CCGAACGCTCGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19998752 original size:26 final size:26
Alignment explanation
Indices: 19998722--19998772 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19998712 TTGACTTAGG
* *
19998722 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGAAGCTCATTCCCAGTCTAAA
*
19998748 CATACGAAGCTCATTCCTAGTCTAA
1 CATACGAAGCTCATTCCCAGTCTAA
19998773 GTTCAGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGCTCATTCCCAGTCTAAA
Found at i:20000136 original size:721 final size:710
Alignment explanation
Indices: 19998748--20000233 Score: 2257
Period size: 721 Copynumber: 2.1 Consensus size: 710
19998738 CCAGTCTAAA
* * * * *
19998748 CATACGAAGCTCATTCCTAGTCTAAGTTCAGATCGGACCGAGGGTTGTGACAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * ** *
19998813 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGTCGGAGAA
66 TAGAGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCAAAGCATCGCCGGAGAA
*
19998878 CCTGACCGACGGCATTGGGGTTCCGGCAATCGGGGGGGCTGTGCGCACATGATGTGCGATGGGTG
131 CCTGACCGACGACATTGGGGTTCCGGCAATCGGGGGGGCTGTGCGCACATGATGTGCGATGGGTG
* *
19998943 CTAGGACTTGGCCCTTATATTGGCCCCCTATCCCTCACAAACCTCGAGAGCTCTCACCCCCTTAA
196 CTAGGACTTGGCCCTTATATTGGCCCCCTATCCCTCACAAACCTCGAGAACTCACACCCCCTTAA
* * *
19999008 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
261 AGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGGACACTT
19999073 TTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAA
326 TTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
19999138 CAAAAATACAAGGATCACGTCTGCCAAGTTTAGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAA
391 CAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * * * *
19999203 ATCTCTAACCGTAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACAGGTCGTCTTGCCATGAAAC
456 ATCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACAGGTCATCTTGCCATGAAAC
*
19999268 TTCACATGAAGGCTTAGGGGACCACTGTATGAATCTACAAGCCATAAAAATGGCATTGGCATGCA
521 TTCACATGAAGGCTTAAGGGACCACTGTATGAATCTACAAGCCATAAAAATGGCATTGGCATGCA
19999333 GAAATAAGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCT
586 GAAATAAGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCT
* *
19999398 CTCTGACCGGCGTAGTGCCCGCCCGCCTGTTCGCCCGC-TCGCTCATTTCGTCGGTTGGCTTAGG
651 CTCTGACCGGAGTAGTGCCCGCCCGCC----AGCCCGCAT-GCTCATTTCGTCGGTTGGCTTAGG
* * *
19999462 CATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCGGCATCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGGC
* *
19999527 TAGGGCATGTTCTGGTGCCACATTTTTCTTCGTC-GAGGCACCATCGCCAAAGCATCGCCGGAGA
66 TAGAGCATGTGCTGGTGCCACATTTTTCTTCGTCAG-GGCACCATCGCCAAAGCATCGCCGGAGA
* * *
19999591 ACCTGATCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGACATTGGGGTTCCGGCAATCGGGGGGG-C------TGTGCGCACATGATGTGC
*
19999656 GATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCAC
188 GATGGGTGCTAGG-ACTTGGCCCTTATATTGGCCCCCTATCCCTCA-CAAACCTCGAGAACTCAC
*
19999720 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAAT
251 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTAAAAT
19999785 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTT-GCTGAATTTTTTT
316 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTTAGCTGAATTTTTTT
* * **
19999849 -TGGATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGGAAACTCCTTCCAAAAA
380 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAA
*
19999913 AATTTTAAAAAAT-TCCGAACTGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAAC-GAGTCAT
445 AATTTTAAAAAATCT-CGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACAG-GTCAT
* * *
19999976 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
508 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATCTACAAGCCATAAAAATG
* * * *
20000041 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTGCCACCCTATCGATCCACGGCTT
573 GCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTT
* *
20000106 GCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCAGCCCGCATGCTCGTTTCGTCGGTT
638 GCGCATCCCGTCTCTCTGACCGGAGTAGTGCCCGCCCGCCAGCCCGCATGCTCATTTCGTCGGTT
20000171 GGCTTAGG
703 GGCTTAGG
* * * *
20000179 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGATAGCA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCA
20000234 AGATTGACAG
Statistics
Matches: 699, Mismatches: 59, Indels: 25
0.89 0.08 0.03
Matches are distributed among these distances:
713 1 0.00
714 146 0.21
715 1 0.00
717 77 0.11
718 1 0.00
720 4 0.01
721 329 0.47
722 134 0.19
723 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (710 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGGC
TAGAGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCAAAGCATCGCCGGAGAA
CCTGACCGACGACATTGGGGTTCCGGCAATCGGGGGGGCTGTGCGCACATGATGTGCGATGGGTG
CTAGGACTTGGCCCTTATATTGGCCCCCTATCCCTCACAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
ATCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACAGGTCATCTTGCCATGAAAC
TTCACATGAAGGCTTAAGGGACCACTGTATGAATCTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATAAGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGACCGGAGTAGTGCCCGCCCGCCAGCCCGCATGCTCATTTCGTCGGTTGGCTTAGG
Found at i:20000367 original size:26 final size:26
Alignment explanation
Indices: 20000337--20000389 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20000327 GTTGACTTAG
*
20000337 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20000363 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20000389 G
1 G
20000390 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20003423 original size:904 final size:904
Alignment explanation
Indices: 19994839--19998588 Score: 3450
Period size: 906 Copynumber: 4.1 Consensus size: 904
19994829 GTCTGTGACA
* * * ** * *
19994839 CCCGGCTTGCGCATCCCACCCCTCTAGCCAGCTGAGCGCTTGCACACTCGTTTCGTGGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * * *
19994904 TAAGCATATGGGGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAAATCAGACTG
* * * * *
19994969 GACCGAGGGTTGCGACAGCACATGCTGGGCTCGTGCATGTGCTGGTGCTGCATTTTTCTTTGCCG
131 GACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
** ** * * *
19995034 GGGCACCATCATCGGAGCATTGCCGGAGATCCTGACCGACGGCATTGGGGTTCCGGTGATC-GGG
196 GGGCACCATCGCCGGAGCATCACCGAAGAGCCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGG
*
19995098 GGGCCG-G-GGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCC
261 GGGCCGAGCGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
19995161 CCTATCCCTCATCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
326 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
19995226 GCTTCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
391 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
19995291 ACAGTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACC
456 ACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
19995356 AAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAA
520 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAA
* *
19995421 AATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
585 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
19995486 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT-AACCC
650 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
*** *
19995550 ACCTACCACCC-ATTCGATCCACGGCTTGCGCATCCCGTCT-TCCTGGCCGACATAGTGCCCGCC
715 ACCTACCACCCTA-TCGATCCACGGCTTGCGCATCCCGTCTCT-CTGGCCGGTGTAGTGCCCGTC
* * * * *
19995613 CGCCCGTCCGCCCGCTCGTTTCGTCGGTTCGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
778 TGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* *** * * * * * * **
19995678 -TGGACCAGACCGAGGGTTACGGTAGCAGGATCGGTAGCACGTAGAGGGGGACCTGGTCGATC
843 CT-GACCAGACAGAGGGTTGTAGCAGCAAGATCAGCAGCACGCAGAGGGGGACCCGACCGATC
* * * * * * ** * * *
19995740 CCCAGATTACGCATCCCGCCCTTCTGGCCGACTGAGCACCCGCACGCTAATTTCGTCGGTCGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * * * *
19995805 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACA-GAGATAATTCCAAGTCTAAGATCGGACT
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-AGGAGTTCATTCCCAGTCTAAAATCAGACT
* * * * * *
19995869 GGAACGAGGGTTTCGATAACACATGCTGGGCTCGAGAATGTGCTGGTGCCGCATTTTTCTTCG-C
130 GGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * ** *
19995933 TAGGGCACCATCGCC-G-G-AT------A-A-TCTGATCAACGGCATTGGGGTTCCGGCGATCGG
195 -GGGGCACCATCGCCGGAGCATCACCGAAGAGCCTGACCGGCGGCATTGGGGTTCCGGTGATCGG
* * * *
19995987 AGGGGCCG-G-GGGGTGTGCGCACATGATATGCG-TGGGTGCTGGTACTTGGCCCTTATGTGGGC
259 GGGGGCCGAGCGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
19996049 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGT
324 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
19996114 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-TGGACACTTTTTTCAAATGGTCACAAAATCTT
389 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
19996178 GTACAGTTTGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCCCGTCT
454 GTACACTTCGAGTTTTTAGCTGAA--TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** * ** *
19996243 ACCAAGTTT-GAACCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTC
517 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
* * * *
19996307 AAAAATCATGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGACTTAATGGAC
582 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
19996372 CATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCGTGCAGAAATATGAAGATGAGCCTAAA
647 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * *
19996437 CCCATCTACCACACTATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCC---G-A-----CGT
712 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGT
* * * * * *
19996493 -AG--TGCCCGCCCGCTCGTTTCGTTGGTTGGGTTAGGCATACGGAGTTCATTCCCAATCTAAGA
777 CTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * ** *
19996555 TCGGACC-GAAAAGAGAGTTGTGGCAGTAGGATTGGCAGCACGTAG-GGGGGACCCGACCGATC
842 TCTGACCAG-ACAGAGGGTTGTAGCAGCAAGATCAGCAGCACGCAGAGGGGGACCCGACCGATC
** *
19996617 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGGGGGTTAACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * * * *
19996682 TAAGCATGCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAA-AAT-CAGAC
** * ** * * * ** * ** * **
19996747 TTCACTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCA-GACCGAGGGTTG
129 TGGA--CCGAGGGTTA-C-GAC--AG--CA---CATG-CTGGGCTC-GGGCATG--TGCTGG-TG
** * ** ** * * **
19996811 CGGCAGCACATGT-TGGGCTC-GGGCA-TGT-GCTGGTGTCGTATTTCTCTTCACCGGGGCA-CC
178 C--C-GCATTTTTCTTCG-TCGGGGCACCATCGCCGGAG-C--A-------TCACCGAAG-AGCC
* * * * ** *
19996871 ATTATCGG-AGCATCGCAGGAGAACC--TGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGGC
228 -TGACCGGCGGCATTG--GG-GTTCCGGTGATC-G-GG----GGGG--CCGA-G--C--------
* *
19996933 CAGGGGGTGTACTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
270 ---GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
19996998 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
332 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
19997063 AGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACATTT
397 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
19997128 CGAGTTTTTAGCTG-A----------A-GCCAACAAAAATACAAGGATCACATCTACCAAGTTTG
462 CGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
19997181 GGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATG
527 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTG
* * * *
19997246 AAAAATAAAAAACCAGTCGTCTTGCCGTGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGA
592 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * *
19997311 ATTTACAAGCCATAAAAATGGCAGTGGCATGCAGAAATATGAAGATTTACCTAAACCCGCCTATC
657 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** ** * *
19997376 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTTACCGACGTAATGCCC--AT------CC
722 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCTGCCCGCCC
* *
19997433 GCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
787 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGA
* * ** * * * *
19997498 TC-GAAGGTTGTGGCAGCAAGATTGGCAGCACGTAAAGGGGAGACCCAACC-AAC
852 -CAGAGGGTTGTAGCAGCAAGATCAGCAGCACGCAGAGGGG-GACCCGACCGATC
* * * * * *
19997551 CTCAGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* *
19997616 TAGGTATACGGAGTTCATTCCCAGTCTAAGCATACA-GAGTTCATTTCCAGTCTAAGCATGCAGA
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-AGGAGTTCATTCCCAG--T---C-T--A-A
* * * * *
19997680 GTCCATTCCCAGTCTAAGATCAGATAGGAACGAGGGTTACGGCACCACATGCTGGGCTCGAGCTT
121 ----A-----A-TC--AGA-C---T-GGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCAT
* ** * *
19997745 ATGCTGGTGCCATATTTTTCTTCGTCGGAGCATCAT---C-G-G----A--G-A-A-CCTGACCG
169 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAAGAGCCTGACCG
* * * * * *
19997796 GTGGCAGTAGGGTACCGGTGATCGGAGGGGCC-AG-GGGGTGTGCGCACATGATGTGCAATGGGT
234 GCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGAGCGGGGTGTGCGCACATGATGTGCGATGGGT
*
19997859 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCACACCCCCTT
299 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
* *
19997924 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
364 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
19997989 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTTGGATGCCA
429 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCA
** *
19998054 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGGAAACTCCTTCCAAAAAAATTTTAAAA
494 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * *
19998119 AATTCC-GAACTGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
559 AA-TCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
19998183 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATG
623 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
** *
19998248 CAGAAATATGAAGACATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
688 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
19998313 CTCTCTGGCCGATGTAGTGCTCGCCCGCCCGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAG
753 CTCTCTGGCCGGTGTA--G-T-GCCCGTCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * * * *
19998378 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCA-AGGGTTGCAGCAGCAGGAT-TGA
814 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGA-CAGAGGGTTGTAGCAGCAAGATCAG-
**
19998441 CAGCACGCAGAGGGGGACCCGGTCGATC
877 CAGCACGCAGAGGGGGACCCGACCGATC
* * * * * * *
19998469 CCCAGCTTACGCATCCCGCCCCTCTAGTCGGCTGAGCACCCGAACGCTCGTTTCGTGGGTTGACT
1 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * * *
19998534 TACGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTCCATTCCTAGTCTAA
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAA
19998589 GATCGATCCA
Statistics
Matches: 2349, Mismatches: 339, Indels: 314
0.78 0.11 0.10
Matches are distributed among these distances:
877 117 0.05
878 87 0.04
879 6 0.00
880 1 0.00
881 6 0.00
882 1 0.00
883 1 0.00
885 1 0.00
886 1 0.00
887 2 0.00
889 217 0.09
890 243 0.10
891 40 0.02
892 4 0.00
893 3 0.00
894 200 0.09
895 3 0.00
896 9 0.00
897 5 0.00
898 3 0.00
899 1 0.00
900 3 0.00
901 171 0.07
905 1 0.00
906 251 0.11
907 4 0.00
908 1 0.00
909 3 0.00
910 7 0.00
912 5 0.00
913 1 0.00
915 7 0.00
916 13 0.01
917 13 0.01
918 204 0.09
919 6 0.00
922 5 0.00
924 4 0.00
926 1 0.00
928 34 0.01
929 211 0.09
932 1 0.00
933 88 0.04
934 109 0.05
935 8 0.00
936 1 0.00
938 2 0.00
939 2 0.00
940 26 0.01
941 129 0.05
942 52 0.02
943 4 0.00
944 3 0.00
945 3 0.00
946 5 0.00
947 3 0.00
950 2 0.00
951 2 0.00
952 2 0.00
953 2 0.00
954 1 0.00
955 1 0.00
956 5 0.00
957 1 0.00
958 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAAATCAGACTG
GACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
GGGCACCATCGCCGGAGCATCACCGAAGAGCCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGG
GGGCCGAGCGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCTGC
CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTG
ACCAGACAGAGGGTTGTAGCAGCAAGATCAGCAGCACGCAGAGGGGGACCCGACCGATC
Found at i:20003542 original size:905 final size:901
Alignment explanation
Indices: 19999461--20017514 Score: 13578
Period size: 905 Copynumber: 19.9 Consensus size: 901
19999451 GTTGGCTTAG
* * * *
19999461 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCGGCATCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
19999526 CTAGGGCATGTTCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCAAAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
19999591 ACCTGATCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
19999656 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
19999721 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19999786 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTT-T
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** *
19999850 GGATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGGAAACTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** * *
19999915 TTTTAAAAAATTCC-GAACTGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCATCTT
456 TTTTAAAAAA-TCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
19999979 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
20000044 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTGCCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * **
20000109 CATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCAGCCCGCATGCTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* *
20000174 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGATAGCA--A-G
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTT--G-TAGCAGCAGG
* ** * * * *
20000236 ATTGACAGCACACAGAGGGGGACCCGGCCGATCCCCGACTTGTGCATCTCGCCCCTCTGGCCGGC
776 ATCG-CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
20000301 TGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
20000363 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
20000428 CTCGGTCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
** * * ** * *
20000493 ACCTGACCGGTGGCGTTGGGGTTTCGATGATC-AGGGGGCAAGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTG
* * * * * *
20000557 TGATGGGTACTGGTACCTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCGC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
20000622 ATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTATGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
20000687 GGGGACACTTTTTTCCAATGGTCACAAAATCTTGAACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
20000752 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * **
20000817 ATTTTAAAAAAATCCCAAACCGCAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 ATTTT-AAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
20000882 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
20000947 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * *
20001012 GCATCCCGTCTCTCTGGCCGGTATAGTG-CC-C-G-CCGCCCGCCCGCTCATTCCGTCGGTTGGC
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** * * * *
20001073 TTAGGCATACGGAGTTCATCCCCAGTCTAAAGGATTGGACCAAACCGGAGGGTTGTGGCAGTTAG
714 TTAGGCATACGGAGTTCATTCCCAGTCT-AA-GATCAGACCAGA-CAGAGGGTTGTAGCAG-CAG
* * * *
20001138 GATTGGCAGCACGCAAAGGGGGACCCGGCCGATCCCTC-GCTCTGCGCATCCCGCCCCTCTGGCC
775 GA-TCGCAGCACGTAGAGGGGGACCCGACCGATCCC-CGGCT-TGCGCATCCCGCCCCTCTGGCC
* * * ** * *
20001202 GAACTGAGGTGCCCCGC-CGCTCTTCTTTCCATGGGTTGACTTAGGCATACAAAAGGTCATTTCC
837 G-GCTGA-GCG-CCCGCACGCTC--GTTT-CATGGGTTGACTTAGGCATAC-GGAGTTCATTCCC
*
20001266 ATTCT-A
895 AGTCTAA
* * * * * * * * *
20001272 GCATAAGCAGTCCATTCCCAGTCTAAAAATCAGATTCGGACTGAGGGGTTACGCGCAGCACAT-C
1 GCATACGGAGTTCATTCCCAGTCT-AAGATCAGACT-AGAC-CAAGGGTTGCG-GCAGCACATGC
* * * * **
20001336 TGGGCTGGCGGGCATGCCGTTGGTGCCGTAATTTTTCCTTCCT-GGGGCACCA-AAT---AG---
62 TGGGCT--CGGGCATG-TGCTGGTGCCG-CATTTTT-CTTCGTCGGGGCACCATCGTCGGAGCAT
*
20001393 -ACC-G-G----TG---G-C--CATTGGGGTTCCGGTGATTCGGGGGGGCCGACGGGGGGGTGTG
122 CACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGA-TCGGGGGGG-C--C-GGGGGGTGTG
* *
20001445 CACACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
182 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
20001510 CTTGAG-ACTCACA-CCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTA
247 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
20001572 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA-AAAATCTTGTACACTTGGAGTTTTTGG
312 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
20001636 CTGAA-TTTCTTGTGCATGCCAA-ACAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAC
377 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
20001699 TCCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAA
442 TCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
20001764 AACGAGTCGTCTTGCCATGAAACTTCACGTGATA-GCTTAAGGGACCATTGTATG-ATTTACAAG
507 AACGAGTCGTCTTGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAAG
*
20001827 CCATAAAAATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCG
571 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
*
20001891 ATCCACGGCTTGCGCAT-CCGTCTCTCT-GCTCGGTGTAGTGCCCGTCTGCCCGCCCGCCCGCTC
636 ATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGGCGTAGTGCCCG-CTGCCCGCCCGCCCGCTC
* * *
20001954 ATTTCGTCGGTTAGCTTAGGCATACGGAGTTCCATTCCCAGTCTAAGATCTGACCAGATCAG-GG
699 GTTTCGTCGGTTGGCTTAGGCATACGGAGTT-CATTCCCAGTCTAAGATCAGACCAGA-CAGAGG
* * *
20002018 GTTGTAGCAGCAAGATCAGCAGCACGGCAGAGGGGGACCCGACCGAT-CCCGGCTTTGCGCCTCC
762 GTTGTAGCAGCAGGATC-GCAGCAC-GTAGAGGGGGACCCGACCGATCCCCGGC-TTGCGCATCC
* * *
20002082 CGCCCCTCTATGCCGGCTTGAGCGACCGGCTACGCTCGTTTCATGGGTT-ACCTTAGGCAATAGG
824 CGCCCCTCT-GGCCGGC-TGAGCG-CCCGC-ACGCTCGTTTCATGGGTTGA-CTTAGGC-ATACG
* *
20002146 GATTTCATTCCTAGTCTAA
883 GAGTTCATTCCCAGTCTAA
* * * * * *
20002165 GCATA-GAAAGTTCCACTCCCAGTCTTAAAATCAGACCTAGACCAAGGGTTACGACAACACATGC
1 GCATACG-GAGTT-CATTCCCAGTC-TAAGATCAGA-CTAGACCAAGGGTTGCGGCAGCACATGC
* * * *
20002229 TGGGCTCGGGCATGTGCTGGTGCCTGTATTTTTCTTTGCCGGGGCCCCATCGTCGGAGCATCACC
62 TGGGCTCGGGCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC
* * * **
20002294 GAAGAGCCTGACCGACGGCATTGGGGTTCCGGTGATCGGGCGGGGCCGTTTCGGGTGTGCGC-CA
126 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG-GGGGCCG--GGGGGTGTGCGCACA
*
20002358 TTGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
188 -TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
20002423 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
252 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
20002488 TCTGAAATGGGGACACTTTTTTCAAATGGTCA-AAAATCTTGTACACTTGGAGTTTTTGGCTGAA
317 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
20002552 TTTCTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTT
382 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
20002617 CCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGA
447 CCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
20002682 GTCGTCTTGCCATGAAACTTCACGTGATA-GCTTAAGGGACCATTGTATGAATTTACAAGCCATA
512 GTCGTCTTGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
20002746 AAAATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
576 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
20002811 CGGCTTGCGCATCCCGTCTCTCT-GCTCGGTGTAGTGCCCGTCTGCCCGCCCGCCCGCTCATTTC
641 CGGCTTGCGCATCCCGTCTCTCTGGC-CGGCGTAGTGCCCG-CTGCCCGCCCGCCCGCTCGTTTC
* *
20002875 GTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGATCAG-GGGTTGTA
704 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAGAGGGTTGTA
* *
20002939 GCAGCAAGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
768 GCAGCAGGATC-GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
20003004 TAGCCGGCTGAGCGACCGCACGCTCGTTTCATGGGTTAACTTAGGCATAGGGAGTTCATTCCTAG
832 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
20003069 TCTAA
897 TCTAA
* * * * * *
20003074 GCATACGAAGTTCACTCCCAGTCTAAAATCAGACTAGACCAAGGGTTACGACAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
20003139 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
20003204 GCCTGACCGACGGCATTGGGGTTCCGGTGATCGGGCGGGCCGAGCGGGGTGTGCGCCCATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-G-GGGGTGTGCGCACATGATGT
*
20003269 GCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
20003334 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20003399 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
20003464 GTACATGCGAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * * ** * *
20003529 AATTTTCAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGGCT
454 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
20003594 TACCATGAAACTTCACGTGAAGGCTTAAGGG-CCTATTGTACGAATTTACAAGCCATAAAAATGG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-ATTGTATGAATTTACAAGCCATAAAAATGG
* * *
20003658 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * *
20003723 CGCATCCTATCTCTCTGGCCGGCGTAGTGCCCGCATGCCCGTCCGCCCGATCGTTTCATCCGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-TGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *
20003788 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-T-TACGATAGCAG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGTA-G-CAGCAG
* * * * *
20003851 GATCGACAGCACGCAGAGGGGGACTCGATCGATCCCTGGCTTAC-CATCCCGCCCCTCTGGCCGG
775 GATCG-CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* ** * * *
20003915 CTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGAAGTTCATTCCTAGTCTAA
839 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
20003978 GCATAAGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
20004043 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-AGG--CCA----C----CATCCCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
20004097 ACCTGACCGGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGTGCACATGATGT
131 ACCTGACC-GACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
20004162 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * **
20004227 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAACCATTAAAGTACCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20004292 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * *
20004357 GTAAATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGAGGCCAAAACTCC-TCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* **
20004421 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAAGTCGTC
454 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG-AGTCGTC
*
20004485 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
20004550 CATTGGAATGAAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** * * * *
20004615 CGCGTCCCGTCTCTCTGG-CGGATGTAGTGCCCGTCCGCCCGCCCGGTCACTCATTTTGTCAGTT
648 CGCATCCCGTCTCTCTGGCCGG-CGTAGTGCCCG-CTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * ** *
20004679 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAAACTGAGGGTTGCGGTAGCAGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGTAGCAGCAGG
* ** *** * * *
20004744 ATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCTAAGCATGCGCATCCCGCCCCTCTGGTCGGT
776 ATC-GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* **
20004809 TGAGCGACCGCACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
20004871 GAAAATGGAGTTGATTCCCAATCTAAAATCAGACTTGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * **
20004936 CTCGGGCAAGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATC-ACAGGAGCATCGCTAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAG
* * * * *
20005000 AGCCTGACTGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGCGGGGTGTGCGCCCATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATG
* *
20005065 TGCAATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
20005130 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGTA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
20005195 ATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * * *
20005260 CATGCATGCCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * * ** *
20005325 AAATTTTCAAGAATCCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
453 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
20005390 TTGCCATGAAACTTCACATGAAGGCTTAAGGGCCCGTTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
20005455 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * * *
20005520 CGCATCCTATCTCTCTAGCCGACGTAGTGGCCACATGCCCGCCCGCCCGCTCGTTTCATCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-TGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * *
20005585 GCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACAGAGGGTTGTGGCAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGTAGCAGCAGGA
* * * * ** * **
20005650 TTGACAGCACGTAGTGGGAGACTCGTTCGATCCCTGGCTTATGCATCCCGCCCCTCTGGCCGGCT
777 TCG-CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
20005715 GAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
20005776 GCATAAGGAGTTCATTCTCAGTCTAAGATCAGA-TCGGACCGAGGGTTACGACAACACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCAAGGGTTGCGGCAGCACATGCTGG
* * *
20005840 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * *
20005905 CATCCTCGAAGAACCTGATTGGCGGCATTGGGGTTCCGGTGATCGGGGGTGCCGGGGGGTGTGCG
130 -AACCT----G-ACC-GA----CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCG
20005970 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
184 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
20006035 CT-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAA
249 -TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
20006099 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCCAG-TTTTAGC
313 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
20006163 TGAATTTTTTTATGCACGCCAACAAAAATACTAGGATCATGTCTACCAAGTTTGGGGCCAAAACA
378 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * ** *** ** ** *
20006228 CCTTCC-AAAAAATTTTTAAAAAAT-CTCGAACC-AAAAAAATACTG-GGTTCG-GGCATGTGCT
443 CCTTCCGAAAAAA-TTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT--A
**** * * * * * * * **
20006288 GCTGTCGTATTTTTCTTCGTTGGGGCACCATCATCGGAGTATCATCG-G-AGAACTTGACCGACG
504 GAAAACG-A---GTCGTC-TT---G--CCATGA---AACT-TCA-CGTGAAG-GCTTAAGGGAC-
** * * * ****** ** * * * * *
20006351 GCATTG---GGGTTCTGACGATCGAGGGTTTCGGGGGGGTTGTGC--GCACATGATTTTACAGGT
552 -CATTGTATGAATT-T-ACAAGCCA---TAAAAATGGCATTG-GCATGCAGA-AATATGA-AGAT
* * * * * ** * * * * * * *
20006411 TTGCTGTCATTAGCCA-TTA--A-AGTGTCTGA--AATGG---G-G-AT-ACTTTTTTCAAATGG
608 GTGC-CT-A-AACCCACCTACCACCCTATC-GATCCACGGCTTGCGCATCCCGTCTCTC---TGG
**** ** ** * * ** ** * * ** * ** * ** ***
20006464 TCACAAAATCTTGTACACTTCGAGTTTCTAG-CTGAATTTTTTTGT-GCATGCCAGCAAAAATAC
666 -C-CGGCGTAGTGCCCGCTGCCCG---CCCGCCCG-CTCGTTTCGTCGGTTGGC-TTAGGCATAC
** * * *** * *** * ** * **
20006527 AAGGA--TCATGTCTACCAAGT-TTGGAGCCAAAACTTCTTCCAAAAAAATTTTAAAAAATCTTG
724 --GGAGTTCAT-TC--CC-AGTCTAAGA-TC-AGAC--CAGAC-AGAGGGTTGT--AGCAGCAGG
* ** * * *** *** * * * * ***
20006589 AACGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGCCAC--CTTGC-CAT---GAAACT
776 ATCGCAGCACG---T--AGA--G-GGGGACCCG--ACCGATCCCCGGCTTGCGCATCCCGCCCCT
**** * * ** * * * *** * *
20006648 -T--CAC-G-TGAAG-GCTTAAAGGAC-CATTGT-ATGAATTTAC-AAGCCAT-TTAAATGGCAT
831 CTGGC-CGGCTG-AGCGCCCGCACG-CTCGTT-TCATGGGTTGACTTAGGCATACGGAGT-TCAT
**
20006703 TGGCA--C-ACA
891 TCCCAGTCTA-A
* * * ** * ** * ** * * * *
20006712 GAAATATGAAGATGTCCCTAAACCCA-CCTACCACCCTA-TCGATCCACGGCTTG-TGCATTTCG
1 G-CATACG--GA-GT-TC-ATTCCCAGTCTAAGATCAGACTAGA-CCAAGGGTTGCGGCA----G
* * * ** * ** * * * *** *
20006774 TCTC-T-CTGGCCGACGTAGTGCCCGCCCGCCCGT-CCGC-TCGTTTCATCGGTTGGCTTAGGCA
55 -CACATGCTGG--G-C-TCGGGCATG--TGCTGGTGCCGCAT-TTTTCTTC-GTCGGGGCA-CCA
* * * * **
20006835 T--ACGGAGTTCATTC-CC--AG--TCTAAGATCAGACCGG-ATCGAGGGTTGTGCCAACAGGAT
110 TCGTCGGAG--CA-TCACCGGAGAACCT--GA-CCGA-CGGCATTG-GGG-T-T-CCGGC--GAT
* *** * * * * * * ***
20006892 CGACAGCACGCAGAGGGG-G-ACCCAGC-TGATCCT-CGGCTTGGGCAT-CTCGCCCCTCTGGCC
162 CG--GGGGGGCCGGGGGGTGTGCGCA-CATGAT-GTGC-G-ATGGG--TGCT-GGTACT-TGGCC
* ** * * * * ** *** ** * ** *
20006952 GGCTGAGCGCTT-GCACGCTCATTTCTTGGTTTGA-CTT-AGGCATACGGAGTTCATTCCCAGTC
217 --CTTA--TATTGGCCCCCT-A-TCCCTCATCAAACCTTGA-G-A-ACTCA---CA-CCCCCTTA
* * * * * * * ** * *
20007014 TA-AGCATATG-GAGTTCATTCCTA-GTCTAAGAT--CAG-ATCGGA-TCGAGGGTTACGGCAGC
269 AAGAGCATTTGAGA-TT--TTAC-AGGT-T-TGCTGCCAGTAGC-CATTAAAGTG-T-CTG-A--
* ***** **** * * * * * *** *
20007072 ACATGCTGGG-CTCGGGCATGTGCTGGTGC-CATATTTTTCTTCAC--CG-G--GGCACCTGACC
322 A-ATG--GGGACACTTTTTTCAAATGGT-CACAAAATCTTGTACACTTCGAGTTTTTAGCTGA--
***** ** * * ***** ** **** * * * * *
20007130 GACGGCATTG-GGGTTCCGACGATAGGGGGGCTGGGGAGGGTGTGTGCACATGATGTGCGATGGG
381 -ATTTTTTTGTGCATGCCAAC-A-A-AAATAC-AAGGATCACGTCTAC-CAAG-TTTG-G--GGC
* ** ** * * ** * *** * ** * ***
20007194 TACGA-TGGGTGCTG--AATTTTTTTACGCATGCT-AA---CAAAAA---TACAAGGATCGCCTA
436 CAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAA-AATCGTGAA
********** ** * ** * * *** * * *
20007249 CCCGCCCGCTCGTTTCGTCAGTTTG-C-TTAGGCAT-ACG-G-A-G-TTCA-TTCCCAGTCTAAG
499 AAATAGAAAACGAGTCGTC---TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** * * ***** * * * * ** * * * ** *
20007306 -ATCAGACCAGATCGATGGTTGTGGTAGTAGGC-T-CGGTAGCACGTAGAGTGGGACC-CGACCG
561 AAT-TTA-CA-AGCCATAAAAATGGCA-TTGGCATGCAGAAATATGAAGA-TGTG-CCTAAACCC
** ** * * ***
20007367 ATCC--CCGACTTTTGCATCCCGCCCCACTGGCCGGTTGAGC-GCCCG-CATGC-CTATTTCGTG
620 A-CCTACC-AC-CCT--AT--CGATCCAC-GG-C--TTGCGCATCCCGTC-T-CTCT-GGCCG-G
* *** * **** ** * * * * *
20007427 GGT--TG--AATTAG-GCATAAG-AAGTTC-ATTC-CCAG-T---TTAAGCATACGGAGTTCATT
670 CGTAGTGCCCGCT-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * *
20007480 CCTAGTCTAAGATCGGACCAGATC-GAGGGTTGCAGCAGCA-CAT-GCTGGGCTCG-AGCATGTG
734 CCCAGTCTAAGATCAGACCAGA-CAGAGGGTTGTAGCAGCAGGATCGC--AGCACGTAG-A-G-G
* * * * * ** * * ** *
20007541 CTGGTCCTTC-ATTTTTCGTTGTCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGACAGG-
793 -GGGACC--CGA----CCG--ATC----C-CC--GGCTTGCGCATC--C--CGCCCCT--CTGGC
* ** *** *** * * ** * * *
20007604 CGGCATTG-GGGTACTGGCAATCGGGGGGGCCGACGGG-GGGGTGT-GCGCACA-TGATGTGCGA
836 CGGC--TGAGCG--CCCGC-A-CGCTCGTTTC-ATGGGTTGACT-TAG-GCATACGGA-GTTC-A
* ** *
20007665 TGGGTGCTGGTACTTA
890 T---TCCCAGT-CTAA
* **** * * ** * * *** **
20007681 GCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTTGAGAACTCACACC--CCCTTAAAGAGCA
1 G--C--ATA-CGGAGTTC-ATTCC-CAGTCTAA-GATCAG-ACT-AGACCAAGGGTT-GCG-GCA
* * * * ** ** *
20007743 TTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTT-TT
54 ---GCACA---TGCTGG---GCT--C-G--GGCA-T---GTG-CT--GGTGCCG-CATTTTTCTT
**** * * * * ** *** * * ***** *
20007806 CAAATGGTCACAAAATC-TTGTA-CA-CTTC-GAG-TTTTTAGCTGAATTTTTTTGTGCGTTCAT
97 CGTCGGGGCAC--CATCGTCGGAGCATCACCGGAGAACCTGA-CCG-ACGGCATTG-G-G---GT
* * *** * * * * * * *
20007866 TCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC-TTGGGCATGTGCT
153 T-CC-GGC---GATCGG-GGGGGCCGGGGGGTG-TGC-GCACATGATGTGCGAT-GG---GTGCT
* **** *** * * * * * * * *
20007930 GGTGTCGTATTTTTCTTCGCTGGGGCACC-AT-CGTCGGAGC-ATCGTTGGAGAAC-CAGACCGG
206 GGT-AC-T-TGGCCCTTATATTGGCCCCCTATCCCTC--ATCAAACCTT-GAGAACTCACACC--
* * *** * * * * ****** * * * * **
20007991 TGGCATTGGGGTTCCGGTAATCG-GGGGGGCCGGGGGTGTTGTGTGCACATGATGTGCGA-T-GG
263 --CCCTTAAAG----AGCATTTGAGATTTTAC--AGGT-TTG-CTGC-CA-G-T-AGCCATTAAA
* * * * * ** ** *
20008053 GTG-CTGGTACT-TGG-CCCTTATATTGGCCCCCTATCCCTCATC-AAACCTTGAGAACTCACAC
314 GTGTCT-GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAAATCTT--G---T-ACAC
* * **** ** *
20008114 -CCCA-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAATGTTTGA-AAT
364 TTCGAGTTTTTAGC---TGA-ATTTT-----TTTG-TG-CA-T-GCCAACAAAA---AT-ACAA-
* * ** * *
20008176 GGCGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTT-CGAGTTTTTAGCTGAATTT
411 -G-GATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCCGA------A----AA---
** * * * ** * * *
20008236 TTTTGTGCATGCCAACAAAAACACAAGGATCACGTCTACCAAGTTGTGGCCAAAGCTCCTTCCGA
454 AATT-T---T---AA-AAAATC-C--TGAAC-CG-C-AAAAAGTT-TTG--AAA-AT-CGT--GA
**
20008301 AAGAATTTTAAAAAATCTCAAACCGCAAAAGGTTTCGAAAATCGTGAAAAATAGAAAAGGAGTTA
498 AA-AA--TAGAAA--------A-CG----A------G----TC------------------G---
* * * *
20008366 TCTTGCCATGAAACTTCACGCGAAAGCTTAAGTGATCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
20008431 GGCATTAGCATGAAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
20008496 TGCGCATCCTGTCTCTCTGGCCGGCGTAATG-CC-CT-CCTGTCCGCCCGTTCGTTTCGTCGGTT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * * *
20008558 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGTAGA
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGTAGCAGCAGG
* * * * *
20008623 ATCAGTAGCACGTAGAGGGGGACCCGGA-TGATGCCTGGCTTGCGCATCCCACCCCTCTGGCCGG
776 ATC-GCAGCACGTAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* ** * ** * *
20008687 CTAAGTACTCGCACGCTCGTTTTGTGGGTTGACTTTGGCATACGGAGTTCACTCCCAGTCTAA
839 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * ** * *
20008750 GCAAACGGAGTTCATTCGTAGTCTAAGATCGGACT-GAACTGAGGGCTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAG-ACCAAGGGTTGCGGCAGCACATGCTGG
** *
20008814 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * *
20008879 AACCTAACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
20008944 TGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * *
20009009 ACCCCCTTAAAGTGTATTTGAGATATTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
20009074 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
20009139 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACTAAAACTCCTTTCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
**
20009204 ATTTTAAAAAATCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
20009269 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * *
20009334 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTACG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
20009399 CATCTCGTCTCTCTGGCCGACGTA-------ATACCCGCCCGCCCGCTTGTGTCGTCGGTAGGCT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** * * * * *
20009457 TAGGCAAACAGAGTTCATTCCCAGTCTAAGATTGGACC-GAACTGAGGGTTG-CGATAGTAGCAT
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACAGAGGGTTGTAG-CAGCAGGAT
* * * *
20009520 CGACAGCACGTAGAGGGGGACCC-AGCCGATCCTCGACTTGCGCATCCGGCCCCTCTGGCTGGCT
778 CG-CAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * * * * *
20009584 AAACGTCCGTATGCTTGTTTCATGGTTTGACTTAGGCAT-CAGAGTTCATTCCCAGTCTCA
841 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
20009644 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGGGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
** * *
20009709 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCG-CTGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAG
** * * * * * * *
20009773 AATTTAATCGATGGCATTGGGGTTTCGACGATCGGGGGAGCCGGTGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
20009838 CGATGGGTGCTGGTACTTTGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
***
20009903 ATATCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
20009968 GGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
20010033 TGCATGCCAACAAATATACAAGGATCACACCTACCAAGTTTGGGG------------CCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** * *
20010086 GTTTTAAAAAAT-CTCAAACCG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
455 ATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
20010149 TGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
20010214 ATTGGCACGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * **
20010279 GCATCCCGTCTTTCTGGTCGATGTAGTGCCCACTCGCCCGCCCGCTTGCTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCT-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
20010344 CTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCGAGGG-T-T----GC--G--
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGTAGCAGCAGGAT
* ** * * * * *
20010399 -GCAACACGTAGAGGGGGACCCGAAGGATCCCC-GATGTGCACATACCGCCCCGCTGGCTGGCTG
778 CGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT-TGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
20010462 AGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
20010522 GCATACGGAGTTCATTGCCCA-TCTAAGATCGGAC-CGAACCGAGGGTTGTGACCGCACATGTTG
1 GCATACGGAGTTCATT-CCCAGTCTAAGATCAGACTAG-ACCAAGGGTTGCGGCAGCACATGCTG
* * * * * ** * * **
20010585 GGCTTGTGCTTGTGCTGGAGCCGTATTTTTCTTAATCGGGGCACCATTGTCGGAACATCGTCGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
* **
20010650 GAACCTGACCGGCGGCATTGGGGTTCCGGTAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* * * *
20010715 TGCAATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
20010780 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
20010845 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * ** * *
20010910 TGTACATGCCAAGAAAAATAC-AGTGATCATGTCTATGAAGTTTGGGGCCAAAATTCATTCCGAA
388 TGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * ** ** * * *
20010974 AAAGTTTTAAAAAATCTTGAACC-AAAAAAGTTTCAAAAATCACGAAAAATACAAAACAAGTCAT
452 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
20011038 CTTGCAATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
20011103 GCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTAGCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
20011168 GCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCTCGCCCGCCCGCTCGCACGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCT-GCCCGCCCGCCCGCTCGTTTCGTCGGTT
* *
20011233 GGCTTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGATC-GAGGG-T-T----GC-G
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAGAGGGTTGTAGCAGCAG
* ** * * * * **
20011290 G-T---AGCACGTAGAGGGTGACCCGATGGATCCTCGGCTTGCACATCCCGTCGCTCTGGTTGGC
775 GATCGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
20011351 TGACCGCCCGCAAGCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCTCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
20011413 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTACGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
20011478 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCTGGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
** **
20011543 ACCTGACCGACAACATTGGGGTTCTAGCGATC-GGGGGGCCGAGGGGGTGTGCGCACAT-ATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * *
20011606 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* ** *
20011671 ACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTTAGTAGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
20011736 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC--G-----A---G---TTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
20011788 TGCATGCCAACAAAAATGCAAGGATCATGTCT----A--------CC--AACTCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** *
20011839 ATTTTGAAAAATCCCAAACCGCAAAAAG-TTTCAAATATCGTGAAAAATAGAAAACGAGTCGTCT
455 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAA-ATCGTGAAAAATAGAAAACGAGTCGTCT
*
20011903 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
20011968 ATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCATGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
20012032 GTATCCCGTCTCTCTGGCCGGCGTAGTG-CC-C-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** * * *
20012094 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCACCAGCAGG-TC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGTAGCAGCAGGATC
* * * * * * * *
20012158 GACAACACGTAGA-GAGGACCCGATCGATCCCCGACTTGTGCATCCCACCCATCTGGCTGGCTGA
779 G-CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
20012222 GCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATATGGAG-ACATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
20012280 GCATTCGAAGTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
** ** ** ** *
20012345 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGTGCCATCACCAAAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * *
20012410 ACCTGACTTG-CGGCAATAGGGTTCTGACGATCGGGGGGGCCGGGGGGTG-GCGCACATGATGTG
131 ACCTGAC-CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
20012473 TGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAA-CTTCGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GAGAACTCA
* * * * *
20012537 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCTATTAAATTGTCCGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20012602 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
20012667 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTAGGGGCC-AAACCCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * * * * *
20012731 AATTTTAAACAATCCCAAACCGTAAAAAATTTTGAAAATCATGAAAAATAGAAAATGAGTCGTGT
454 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * **
20012796 TGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATCGTCCGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
20012861 ATTGGCATGCAGAAAATATGAAGATATGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTG
584 ATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
20012926 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCACCCGCCCGCTCATTTCGTCGATTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * * * * * *
20012991 GCTTAAACATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGGAGGGTTGCT-GTAGCAAG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTG-TAGCAGCAGG
* * * * * ** ** **
20013055 ATCGACAGCACGCAGAGGGGGACCTGATCGATCCCTGACTTATGCATCCTACCCCTCTGGCCGAT
776 ATCG-CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * ***
20013120 TGAGCACCTGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAAATAA
840 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
20013182 GCATATGGAGTTCATTTCCAGTCTAAGATCAGA-TCAGACCAAGGGTTAAGACAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCAAGGGTTGCGGCAGCACATGCTGG
* * * * *
20013246 GCTCGAGCATGTGTTGGTGCCGCATTTTTCTTC-ACTGGGGCACCATCGTCGGTGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGA
* * * * **
20013310 GAACCTGATCGGCAGCATTGGGGTTCCTGCGATCGGGGGCACCGGGGGGAGGTGTGCGCACATGA
129 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGG-GGTGTGCGCACATGA
* * * *
20013375 TGTGCGATGTGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
20013440 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
** *
20013505 AAATGGGGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTAT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
20013570 TTCGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTTCCAA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
20013635 AAAAATTTTAAAAAATCCTGAACCGTAAAAAG-TTTCAAAAGTCATGAAAAATAAAAAACGAGTC
451 AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAA-TCGTGAAAAATAGAAAACGAGTC
*
20013699 GTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * *
20013764 TGGCATTGGCACACAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGC
580 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * * * **
20013829 TTGCGCATCCCGTCTCTCTTACTGGCGTAGTGCCCACCCGTCCGCCTACCCGCTCG-TTCTGTCG
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCTGCCCGCCCGCCCGCTCGTTTC-GTCG
* * * * *
20013893 GTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAGATAGAGGGTTGCAGCAGC
708 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGTAGCAGC
* * *
20013958 AGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCTTCCCACCCCTCTGGCC
773 AGGATC-GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
20014023 GACTAAGTGCTCGCACGCTCGTTTC----G-TG-----GG--T--TG-G--C-TT---AG-----
837 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
20014062 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
20014127 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCACCGTAGCTTCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
*** * * *
20014192 ACCTGACCGGTAGCATTGGGGTTCCGGTGATCTGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
20014257 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCAACAAA-CTTCGAGAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GAGAACTCAC
20014321 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* ** *
20014386 AGGGACACTTTTTTCAAATCATCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
20014451 TGCATGCCAGCAAAAATACAAGCATC-CTGTCTACCAAGTTTGGGGCTAAAAATCCTTCCGAAAA
390 TGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
20014515 AATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
20014579 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAGAAAA-G
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATG
* * *
20014643 GCATTGGCATGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
20014708 GCGCAT----TCTGTCT---C-TC-TA--ACCCG-T----------CCGCTGGTTTCGTCGGTTG
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* **
20014751 GCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCAGACCA-AGGG-T-T---A-C--G
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAGAGGGTTGTAGCAGCAGG
* * **
20014807 ---GCAGCACGTAGAGGGGGACCTGACGGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTTGGCT
776 ATCGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
20014869 GAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * **
20014930 GCATATAGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGAG-AGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCG-GCAGCACATGCTGG
**
20014994 GCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * **
20015059 AACCTGACCGACAGCATTGGGGTTCCGGTGATCGGATGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
20015124 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-AAAACTTCGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GAGAACTCA
*
20015188 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
20015253 TGGGGATACTTTTTTCAATTTGTCACAAAATCTTCTACACTTAGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * *
20015318 GTGCATGCCAGCAAAAATAC-AGGCATCTTGTCGACCAAGTTTGGGGCTAAAAATCCTTCCGAAA
389 GTGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
20015382 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGT-GTC
453 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
20015446 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * ** * * *
20015511 CATTGGCATGTAGAAATAAGAAGATGTGCCTAAACCCACCTATTACCCTATCGATTCATGACTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
20015576 CGCAT-CC-TGTCTCT------C-TA----AC-CT--------GCCCGCTAGTTTCGTCGATTGG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
20015619 CTTAGGCATACGGAGTTCATTCCTAGTCTGAGATCAGACCGGACTGAAGGTTGTGGCAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGTAGCAGCAGGAT
* * * * *
20015684 CGGTAGCATGCAGAGGGGGA--C--CC-A------G--T-CG-ATCCCGCCCCTCTGGTCGACTG
778 C-GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * **
20015734 AGGGCCCGTAGGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
20015794 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATTGGACTGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--CT---A---GAC-----
* ** * * * *
20015859 CTAGGGTTTTGGCAACACATGCTAGGCTCGGGCATGTGCTGGTGCCGCTTTTTTCTTCATCGGGG
40 CAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
20015924 CACCATCG-CGGGAGCATCACCGGAGAACCTGACCGACGGTAATT-GGGTTCTGGCGATCGAGGG
105 CACCATCGTC-GGAGCATCACCGGAGAACCTGACCGACGG-CATTGGGGTTCCGGCGATCGGGGG
** * * * *
20015987 AACGGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCACCT
168 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
20016052 ATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACT
233 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
20016117 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAATTCGTCACAAAATGTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
20016182 CTTGGAGCTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAATATAC-AGAGATCACGTCTACCA
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAG-GATCACGTCTACCA
* * * *
20016245 TGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAA
426 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAA
* *
20016310 ATCGTAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
491 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
20016375 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGACTAAACCCA
556 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* *
20016440 CCTACCACCCTATCGATTCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CT---
621 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTGCC
* * * *
20016499 -G-CCGCCCGCTCGTTCCGTCGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGA
686 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
20016562 TCGGACTGAGGGTTGT-GACAGTAGGATCGATAGCATGTAGAGGGGGACCCGACCGATCCCTGGC
751 CCAGACAGAGGGTTGTAG-CAGCAGGATCG-CAGCACGTAGAGGGGGACCCGACCGATCCCCGGC
* * ** * * * * * *
20016626 TTGCTCATCCCACCCCTCTGGCTAGCTGAGCACCCACACGCTCATTTCGTGAGTTGACGTAGGCA
814 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* *
20016691 TACGGAGTTTATTTCCAGTCTAA
879 TACGGAGTTCATTCCCAGTCTAA
* *
20016714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
** * * *
20016779 CTCGGGCATGTGCTGGTGATGCATTTTTTTTCGCCGGGGCACCA-------A-CGTCA---GAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* ** * *
20016833 ACCTGACCGACCGCATTGGGGTTTTGACGATCGGGGGGGTCGGGGGGTTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTG
** * *
20016898 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTGAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * *
20016963 ACCCCTTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGACTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
20017028 GGGGACGCTTTTTTCGAGTGGTCACAAGATCTTGTACACTTCGAGTGTTTAGCTGATTTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
20017093 TGCATGCCAACAAAAATACAAGGATCCCGTCTACC-AGTTTTGGGGCCAAAAGTCCTT-CTAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
20017156 ATATTTTAAAAAAT-CTCAAACAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGACGT
454 A-ATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
20017220 CTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
20017285 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTAATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
20017350 GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * ** * *
20017415 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCA-AGGGTTGCGGTAGTAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAGAGGGTTGTAGCAGCAG
* * *
20017479 GATCGGCAGCACGCAGAAGTGGACCCGACCGATCCC
775 GATC-GCAGCACGTAGAGGGGGACCCGACCGATCCC
20017515 GTCTACCATG
Statistics
Matches: 13844, Mismatches: 2340, Indels: 1945
0.76 0.13 0.11
Matches are distributed among these distances:
842 70 0.01
846 2 0.00
847 2 0.00
848 1 0.00
849 1 0.00
852 2 0.00
853 1 0.00
854 57 0.00
855 4 0.00
856 1 0.00
857 2 0.00
858 72 0.01
859 2 0.00
860 3 0.00
861 2 0.00
862 87 0.01
863 125 0.01
864 103 0.01
865 9 0.00
866 20 0.00
867 509 0.04
868 560 0.04
869 20 0.00
872 2 0.00
873 7 0.00
874 2 0.00
875 2 0.00
876 39 0.00
877 508 0.04
878 167 0.01
879 258 0.02
880 178 0.01
881 184 0.01
882 25 0.00
883 46 0.00
884 433 0.03
885 10 0.00
886 4 0.00
887 2 0.00
888 6 0.00
889 240 0.02
890 457 0.03
891 696 0.05
892 397 0.03
893 807 0.06
894 677 0.05
895 288 0.02
896 82 0.01
897 43 0.00
898 71 0.01
899 304 0.02
900 27 0.00
901 175 0.01
902 498 0.04
903 139 0.01
904 848 0.06
905 1088 0.08
906 526 0.04
907 155 0.01
908 92 0.01
909 91 0.01
910 92 0.01
911 110 0.01
912 52 0.00
913 257 0.02
914 285 0.02
915 109 0.01
916 127 0.01
917 7 0.00
918 2 0.00
919 3 0.00
920 96 0.01
922 5 0.00
923 4 0.00
924 3 0.00
925 8 0.00
926 14 0.00
927 15 0.00
928 13 0.00
929 12 0.00
930 30 0.00
931 16 0.00
932 3 0.00
933 13 0.00
934 10 0.00
935 7 0.00
936 4 0.00
937 12 0.00
938 22 0.00
939 33 0.00
940 22 0.00
941 22 0.00
942 15 0.00
943 30 0.00
944 18 0.00
945 22 0.00
946 25 0.00
947 20 0.00
948 35 0.00
949 20 0.00
950 19 0.00
951 10 0.00
952 12 0.00
953 17 0.00
954 8 0.00
955 7 0.00
956 5 0.00
957 8 0.00
958 16 0.00
959 18 0.00
960 15 0.00
961 8 0.00
962 19 0.00
963 5 0.00
964 9 0.00
965 7 0.00
966 24 0.00
967 11 0.00
968 13 0.00
969 12 0.00
970 11 0.00
971 13 0.00
972 8 0.00
973 14 0.00
974 5 0.00
975 2 0.00
976 4 0.00
977 1 0.00
978 1 0.00
979 3 0.00
980 4 0.00
981 2 0.00
982 5 0.00
983 14 0.00
984 11 0.00
985 25 0.00
986 14 0.00
987 22 0.00
988 22 0.00
989 11 0.00
990 12 0.00
991 14 0.00
992 14 0.00
993 2 0.00
994 3 0.00
995 3 0.00
996 1 0.00
997 6 0.00
998 6 0.00
999 5 0.00
1000 1 0.00
1001 6 0.00
1002 2 0.00
1003 1 0.00
1004 4 0.00
1005 10 0.00
1006 5 0.00
1007 4 0.00
1008 2 0.00
1009 4 0.00
1010 10 0.00
1011 11 0.00
1012 11 0.00
1013 6 0.00
1014 5 0.00
1015 5 0.00
1016 2 0.00
1019 4 0.00
1022 18 0.00
1023 14 0.00
1024 435 0.03
1025 602 0.04
1026 679 0.05
1027 686 0.05
1028 508 0.04
1029 669 0.05
1030 566 0.04
1031 510 0.04
1032 558 0.04
1033 504 0.04
1034 375 0.03
1035 444 0.03
1036 517 0.04
1037 473 0.03
1038 393 0.03
1039 461 0.03
1040 478 0.03
1041 364 0.03
1042 476 0.03
1043 409 0.03
1044 340 0.02
1045 384 0.03
1046 341 0.02
1047 316 0.02
1048 577 0.04
1049 237 0.02
1050 441 0.03
1051 335 0.02
1052 399 0.03
1053 204 0.01
1054 255 0.02
1055 548 0.04
1056 287 0.02
1057 245 0.02
1058 245 0.02
1059 316 0.02
1060 394 0.03
1061 281 0.02
1062 203 0.01
1063 254 0.02
1064 156 0.01
1065 251 0.02
1066 271 0.02
1067 219 0.02
1068 273 0.02
1069 230 0.02
1070 130 0.01
1071 234 0.02
1072 358 0.03
1073 122 0.01
1074 116 0.01
1075 127 0.01
1076 112 0.01
1077 298 0.02
1078 127 0.01
1079 157 0.01
1080 167 0.01
1081 207 0.01
1082 113 0.01
1083 289 0.02
1084 65 0.00
1085 172 0.01
1086 41 0.00
1087 130 0.01
1088 101 0.01
1089 59 0.00
1090 51 0.00
1091 63 0.00
1092 67 0.00
1093 63 0.00
1094 73 0.01
1095 185 0.01
1096 98 0.01
1097 49 0.00
1098 56 0.00
1099 38 0.00
1100 23 0.00
1101 81 0.01
1102 54 0.00
1103 55 0.00
1104 58 0.00
1105 27 0.00
1106 25 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGTAGCAGCAGGATCGC
AGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20005897 original size:11 final size:11
Alignment explanation
Indices: 20005883--20005908 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
20005873 ATCGGGGCAC
20005883 CATCGCCGGAG
1 CATCGCCGGAG
20005894 CATCGCCGGAG
1 CATCGCCGGAG
20005905 CATC
1 CATC
20005909 CTCGAAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.38, G:0.31, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:20007027 original size:26 final size:26
Alignment explanation
Indices: 20006991--20007043 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20006981 TTTGACTTAG
20006991 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
20007017 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20007043 G
1 G
20007044 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20007467 original size:26 final size:26
Alignment explanation
Indices: 20007438--20007490 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20007428 GTTGAATTAG
*
20007438 GCATAAGAAGTTCATTCCCAGTTTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
* * *
20007464 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
20007490 G
1 G
20007491 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:20010526 original size:26 final size:26
Alignment explanation
Indices: 20010496--20010548 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20010486 GTTGACTTAG
20010496 GCATACGGAGTTCATT-CCCAGTCTAA
1 GCATACGGAGTTCATTGCCCA-TCTAA
20010522 GCATACGGAGTTCATTGCCCATCTAA
1 GCATACGGAGTTCATTGCCCATCTAA
20010548 G
1 G
20010549 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCCATCTAA
Found at i:20011353 original size:891 final size:889
Alignment explanation
Indices: 20007860--20017475 Score: 10787
Period size: 891 Copynumber: 10.9 Consensus size: 889
20007850 TTTTTTGTGC
** *
20007860 GTTCATTCCCAGTCTAAGATTGGACC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCA
1 GTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * ** *
20007924 TGTGCTGGTGTCGTATTTTTCTTC-GCTGGGGCACCATCGTCGGAGCATCGTTGGAGAACCAGAC
65 TGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* ** * *
20007988 CGGTGGCATTGGGGTTCCGGTAATCGGGGGGGCCGGGGGTGTTGTGTGCACATGATGTGCGATGG
129 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGG
*
20008053 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * *
20008117 ATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAATGTTTGAAATGGCGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
20008182 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
20008247 CCAACAAAAACACAAGGATCACGTCTACCAAG-TTGTGGCCAAAGCTCCTTCCGAAAGAATTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * * * **
20008311 AAAAATCTCAAACCGCAAAAGGTTTCGAAAATCGTGAAAAATAGAAAAGGAGTTATCTTGCCATG
453 AAAAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * * *
20008376 AAACTTCACGCGAAAGCTTAAGTGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
20008441 TGAAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
20008506 GTCTCTCTGGCCGGCGTAATGCCCTC-CTGTCCGCCCG-T-TCGTTTCGTCGGTTGGCTTAGGCA
648 GTCTCTCTGGCCGACGTAGTGCCCGCTC-GCCCGCCCGCTGTCGTTTCGTCGGTTGGCTTAGGCA
* * *
20008568 TACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGTAGAATCAGTAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-----G-GGT--T-G---CGGTAGCA
* * * * ** *
20008633 CGTAGAGGGGGACCCGGAT-GATGCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTAAGTACTC
765 CGTAGAGGGGGACCC-GATGGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCC
* * * * *
20008697 GCACGCTCGTTTTGTGGGTTGACTTTGGCATACGGAGTTCACTCCCAGTCTAAGCAAACGGA
828 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
** * * * * *
20008759 GTTCATTCGTAGTCTAAGATCGGACTGAACTGAGGGCTGCGGTAGCACATGCTGGGCTCGGGCAT
1 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * *
20008824 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTAACCG
66 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
* *
20008889 GCGGCATTGGGGTTCCGGTGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTG
131 GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
20008953 CTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * *
20009018 AAGTGTATTTGAGATATTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACATT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
20009083 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
20009148 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACTAAAACTCCTTTCAAAAAAATTTTAAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
*
20009213 AATCCTGAACC-ATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
456 AATCCCGAACCGA-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* **
20009277 ACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACA
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
20009342 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTACGCATCTCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
20009407 CTCTCTGGCCGACGTAAT--AC-C-CGCCCGCCCGCT-T-GTGTCGTCGGTAGGCTTAGGCAAAC
650 CTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCTGTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** *
20009466 AGAGTTCATTCCCAGTCTAAGATTGGACC-GAACTGAGGGTTGCGATAGTAGCATCGACAGCACG
715 GGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGC----G--G--T----AGCACG
* * * * *
20009530 TAGAGGGGGACCC-A-GCCGATCCTCGACTTGCGCATCCGGCCCCTCTGGCTGGCTAAACGTCCG
767 TAGAGGGGGACCCGATG--GATCC-CGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCG
* * ** * * * *
20009593 TATGCTTGTTTCATGGTTTGACTTAGGCAT-CAGAGTTCATTCCCAGTCTCAGCATACGGA
829 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * **
20009653 GTTCATTCCCAGTCTAAGATCAGA-CTAGACCAAGGGTTGGGGCAGCACATGCTAGGCTCAAGCA
1 GTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
** * * ** * *
20009717 TGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCG-CTGGAGCATCACCGGAGAATTTAAT
65 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGAC
** * * * *
20009781 CGATGGCATTGGGGTTTCGACGATCGGGGGAGCC-GGTGGGTGTGCGCACATGATGTGCGATGGG
129 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * ***
20009845 TGCTGGTACTTTGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACATATCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
20009910 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAGA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
20009975 CTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** *
20010040 CAACAAATATACAAGGATCACACCTACCAAGTTTGGGG------------CCGAAAAAGTTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * ** * *
20010093 AAAATCTCAAACCG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
454 AAAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
20010157 AACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
20010222 GCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
20010287 TCTTTCTGGTCGATGTAGTGCCCACTCGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAAGCA
649 TCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGC-TG-TCGTTTCGTCGGTTGGCTTAGGCA
* * * *
20010352 TATGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCGAGGGTTGCGGCAACACGTAGAGGGGGA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACGTAGAGGGGGA
* * * * * * * *
20010417 CCCGAAGGATCCCCGATGTGCACATACCGCCCCGCTGGCTGGCTGAGTGCCCACACGCTCATTTC
777 CCCGATGGATCCCGGCT-TGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTC
*
20010482 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
841 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * * *
20010531 GTTCATTGCCCA-TCTAAGATCGGACCGAACCGAGGGTTGTGACCGCACATGTTGGGCTTGTGCT
1 GTTCATT-CCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * *
20010595 TGTGCTGGAGCCGTATTTTTCTTAATCGGGGCACCATTGTCGGAACATCGTCGGAGAACCTGACC
65 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
** * *
20010660 GGCGGCATTGGGGTTCCGGTAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGCT
130 GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
20010725 GCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
20010790 AAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAT
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
20010855 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** * * *
20010920 AAGAAAAATAC-AGTGATCATGTCTATGAAGTTTGGGGCCAAAATTCATTCCGAAAAAGTTTTAA
390 AACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** ** ** * * * *
20010984 AAAATCTTGAACC-AAAAAAGTTTCAAAAATCACGAAAAATACAAAACAAGTCATCTTGCAATGA
454 AAAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
20011048 AACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
20011113 GCAGAAATATGAAGATGTGCCCAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGCATCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
20011178 TCTCTCTGGCTGACGTAGTGCCCGCTCGCCCGCCCGCTCGCACGTTTCGTCGGTTGGCTTAAGCA
649 TCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCT-G-TCGTTTCGTCGGTTGGCTTAGGCA
* * *
20011243 TACGGAGTTCATTCCAAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCACGTAGAGGGTGA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACGTAGAGGGGGA
* * * * * *
20011308 CCCGATGGATCCTCGGCTTGCACATCCCGTCGCTCTGGTTGGCTGACCGCCCGCAAGCTCATTTC
777 CCCGATGGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTC
* * *
20011373 GTGGGTTGACTTAGGTATACGGAGTTCATTCTCAGTCTAAGCATACAGA
841 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
20011422 GTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTACGGCAGCACATGTTGGGCTCGGGCAT
1 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * *
20011487 GTGCTGGTGCCACATTTTTCTTCATCTGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCG
66 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
* ** ** *
20011552 ACAACATTGGGGTTCTAGCGATC-GGGGGGCCGAGGGGGTGTGCGCACAT-ATGTGCGATGGGTG
131 GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
20011615 CTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACACCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
** *
20011680 AAGAGCATTTGAGATTTTACAGGTTTGCTGTTAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
20011745 TTTTTCAAATGGTCACAAAATCTTGTACACTTC--G-----A---G---TTTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
20011797 ACAAAAATGCAAGGATCATGTCT----A--------CC--AACTCCTTTCGAAAAAATTTTGAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
20011848 AATCCCAAACCGCAAAAAG-TTTCAAATATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
456 AATCCCGAACCGAAAAAAGTTTTGAAA-ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
20011912 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
20011977 CAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCATGGCTTGCGTATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
20012041 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC--TCGTTTCGTCGGTTGGCTTAGGCATAC
650 CTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCTGTCGTTTCGTCGGTTGGCTTAGGCATAC
** *
20012104 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCACCAGCAGGTCGACAACACGTA
715 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT------GC-GGT----AGCACGTA
* * * * * * *
20012169 GA-GAGGACCCGATCGATCCCCGACTTGTGCATCCCACCCATCTGGCTGGCTGAGCGCCCACACG
769 GAGGGGGACCCGATGGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACG
* * * * *
20012233 CTCATTTCATGGGTTGACTTAGGCATATGGAG-ACATTCCCAGTCTAAGCATTCGAA
833 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
20012289 GTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
1 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
** * ** ** ** * * **
20012354 GTGCTGGTGCCATATTTTTCTTCGTCGGGGTGCCATCACCAAAGCATCACTGGAGAACCTGACTT
66 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
* * * * *
20012419 GCGGCAATAGGGTTCTGACGATCGGGGGGGCC-GGGGGGTG-GCGCACATGATGTGTGATGGGTG
131 GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
20012482 CTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCTCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
20012547 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCTATTAAATTGTCCGAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
20012612 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
20012677 ACAAAAATACAAGGATCACGTCTACCAGGTTAGGGGCC-AAACCCCTTCTGAAAAAATTTTAAAC
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * *
20012741 AATCCCAAACCGTAAAAAA-TTTTGAAAATCATGAAAAATAGAAAATGAGTCGTGTTGCCATGAA
456 AATCCCGAACCG-AAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * **
20012805 ACTTCACGTGAAGGCTTAAGTGACCATCGTCCGAATTTACAAGCCATAAAAATGGCATTGGCATG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
20012870 CAGAAAATATGAAGATATGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCG
585 CAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * **
20012935 TCTCTCTGGCCGACGTAGTGCCCGCCCGTCCACCCGCCCGCTCATTTCGTCGATTGGCTTAAACA
649 TCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCG-CTG-TCGTTTCGTCGGTTGGCTTAGGCA
* * * *
20013000 TATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGGAGGGTTGCTGTAGCAAGATCGACAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC----G---G-T----AGCA
* * * * ** ** * ** * *
20013065 CGCAGAGGGGGACCTGATCGATCCCTGACTTATGCATCCTACCCCTCTGGCCGATTGAGCACCTG
765 CGTAGAGGGGGACCCGATGGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCG
* * *** *
20013130 CACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAAATAAGCATATGGA
829 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * ** * * *
20013191 GTTCATTTCCAGTCTAAGATCAGATC-AGACCAAGGGTTAAGACAGCACATGCTAGGCTCGAGCA
1 GTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
20013255 TGTGTTGGTGCCGCATTTTTCTTCA-CTGGGGCACCATCGTCGGTGCATCGCCGGAGAACCTGAT
65 TGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * **
20013319 CGGCAGCATTGGGGTTCCTGCGATCGGGGGCACCGGGGGGAGGTGTGCGCACATGATGTGCGATG
129 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGG-GGTGTGCGCACATGATGTGCGATG
* * *
20013384 TGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
20013449 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
** * *
20013514 CACTTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTCGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
20013579 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTTCCAAAAAAATTTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
20013644 AAAAAATCCTGAACCGTAAAAAG-TTTCAAAAGTCATGAAAAATAAAAAACGAGTCGTCTTGCCA
452 AAAAAATCCCGAACCGAAAAAAGTTTTGAAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
20013708 TTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
20013773 CACACAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATC
581 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * * * * * *
20013838 CCGTCTCTCTTACTGGCGTAGTGCCCACCCGTCCGCCTAC-CCGCTCG-TTCTGTCGGTTGGCTT
646 CCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCC--CGCTG-TCGTTTC-GTCGGTTGGCTT
* * * **
20013901 AGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAGATAGAGGGTTGCAGCAGCAGGATCGG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT------GC-GG-T---
*** * * * * * *
20013966 CAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCTTCCCACCCCTCTGGCCGACTAAGT
761 -AGCACGTAGAGGGGGACCCGATGGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
* * *
20014031 GCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--
824 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
20014092 A
889 A
*
20014093 G---------A--C------CAGACC--A---AGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
1 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* ** * * *
20014136 GTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCACCGTAGCTTCACCGGAGAACCTGACCG
66 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
** * * *
20014201 GTAGCATTGGGGTTCCGGTGATCTGAGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
131 GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
20014265 CTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCAACAAACTTCGAGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
20014330 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
** *
20014395 TTTTTCAAATCATCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
20014460 GCAAAAATACAAGCATC-CTGTCTACCAAGTTTGGGGCTAAAAATCCTTCCGAAAAAATTTTAAA
391 ACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * *
20014524 AAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
455 AAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
20014589 ACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAGAAAA-GGCATTGGCAT
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCAT
* * * * *
20014653 GTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATTCTG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
20014718 TCTCTCT-----A---A---CCCG-T-------CCGCTG--GTTTCGTCGGTTGGCTTAGGCATA
649 TCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCTGTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * *
20014762 CGGAGTTCATTCCCTGTCTAAGATTGGACCAGACCAAGGGTTACGGCAGCACGTAGAGGGGGACC
714 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACGTAGAGGGGGACC
* * * * *
20014827 TGACGGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTTGGCTGAGCGCCCGTACGCTCATTTCAT
779 CGATGGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGT
**
20014892 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGA
843 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
20014939 GTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGAG-AGCACATGCTGGGCTCGGGCA
1 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCG-GCAGCACATGCTGGGCTCGGGCA
** * *
20015003 TGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
65 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * **
20015068 GACAGCATTGGGGTTCCGGTGATCGGATGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
130 GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
20015132 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACTTCGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
20015197 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
20015262 TTTTTTCAATTTGTCACAAAATCTTCTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** * * *
20015327 AGCAAAAATAC-AGGCATCTTGTCGACCAAGTTTGGGGCTAAAAATCCTTCCGAAAAAATTTTAA
390 AACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
20015391 AAAATCCTGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGT-GTCTTGCCATGA
454 AAAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
20015455 AACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCAT
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * ** * * * *
20015520 GTAGAAATAAGAAGATGTGCCTAAACCCACCTATTACCCTATCGATTCATGACTTGCGCATCCTG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
20015585 TCTCTCT-----A---A-----C-CT-----GCCCGC--TAGTTTCGTCGATTGGCTTAGGCATA
649 TCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCTGTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * * * * ** *
20015629 CGGAGTTCATTCCTAGTCTGAGATCAGACCGGACTGAAGGTTGTGGCAGCAGGATCG-GTAGCAT
714 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACG-TAGAGGGGGA-
* * * * * * * * *
20015693 GCAGAGGGGGA-CCCAG--T-CG-ATCCCGCCCCTCTGG-TCGACTGAGGGCCCGTAGGCTCGTT
777 CCCGA--TGGATCCCGGCTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCATT
*
20015752 TTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
839 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
20015803 GTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATTGGACTGGATCTAGGGTTT
1 GTTCATTCCCAGTCTAAG-AT-C--AG---------A--C--CGA----AC-----CGAGGGTTG
* * * *
20015868 TGGCAACACATGCTAGGCTCGGGCATGTGCTGGTGCCGCTTTTTTCTTCATCGGGGCACCATCG-
40 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGT
* * * * * **
20015932 CGGGAGCATCACCGGAGAACCTGACCGACGGTAATT-GGGTTCTGGCGATC-GAGGGAACGGGGG
105 C-GGAGCATCGCCGGAGAACCTGACCGGCGG-CATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG
* * *
20015995 GGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCACCTATCCCTCA
168 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
20016060 TCAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAG
233 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * * * *
20016125 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAATTCGTCACAAAATGTTGTACACTTGGAGC
298 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
20016190 TTTTAGCTGAATTTTTTTATGCATGCCAA-AAAATATAC-AGAGATCACGTCTACCATGTTTGGG
363 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAG-GATCACGTCTACCAAGTTTGGG
* * * *
20016253 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTAAA
426 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAA
*
20016318 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
491 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
20016383 TTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGACTAAACCCACCTACCAC
556 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
20016448 CCTATCGATTCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CT-G-CCGCCCGC
621 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGC
* * * * * * *
20016508 --TCGTTCCGTCGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGATCGGACTGA
686 TGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* ** *
20016571 GGGTTGTGACAGTAGGATCGATAGCATGTAGAGGGGGACCCGACCGATCCCTGGCTTGCTCATCC
751 GGG-T-TG-C-----G---G-TAGCACGTAGAGGGGGACCCGATGGATCCC-GGCTTGCGCATCC
* * * * * * *
20016636 CACCCCTCTGGCTAGCTGAGCACCCACACGCTCATTTCGTGAGTTGACGTAGGCATACGGAGTTT
803 CGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
20016701 ATTTCCAGTCTAAGCATACGGA
868 ATTCCCAGTCTAAGCATACGGA
20016723 GTTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 GTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
** * ** *
20016787 TGTGCTGGTGATGCATTTTTTTTCGCCGGGGCACCAACGT-----CA------GAGAACCTGACC
65 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * ** * * *
20016841 GACCGCATTGGGGTTTTGACGATCGGGGGGGTCGGGGGGTTGTGCGCACATGATGTGCGATGGGT
130 GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
20016906 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTGACACCCCTTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
20016971 AAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGACTGAAATGGGGACGC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * *
20017036 TTTTTTCGAGTGGTCACAAGATCTTGTACACTTCGAGTGTTTAGCTGATTTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
20017101 AACAAAAATACAAGGATCCCGTCTACC-AGTTTTGGGGCCAAAAGTCCTT-CTAAAAATATTTTA
390 AACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTA
* * * * * *
20017164 AAAAATCTCAAACAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGACGTCTTGCCATG
453 AAAAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
20017229 AAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
**
20017294 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTAATCCACGGCTTGCGCATCCC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
20017359 GCCTCTCTGGCCGACGTAGTGCCTGC-CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
648 GTCTCTCTGGCCGACGTAGTGCCCGCTC-GCCCGCCCG-CTG-TCGTTTCGTCGGTTGGCTTAGG
* * *
20017423 CATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCAAGGGTTGCGGTAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAG
20017476 TAGGATCGGC
Statistics
Matches: 7505, Mismatches: 942, Indels: 558
0.83 0.10 0.06
Matches are distributed among these distances:
842 107 0.01
843 2 0.00
846 2 0.00
847 2 0.00
848 1 0.00
854 53 0.01
855 4 0.00
856 1 0.00
857 3 0.00
858 63 0.01
862 103 0.01
863 130 0.02
864 102 0.01
865 10 0.00
866 17 0.00
867 531 0.07
868 528 0.07
869 14 0.00
870 3 0.00
872 1 0.00
874 1 0.00
876 36 0.00
877 518 0.07
878 165 0.02
879 246 0.03
880 142 0.02
881 187 0.02
882 27 0.00
883 38 0.01
884 447 0.06
885 26 0.00
886 2 0.00
887 3 0.00
888 2 0.00
889 245 0.03
890 440 0.06
891 674 0.09
892 6 0.00
893 193 0.03
894 491 0.07
895 206 0.03
896 7 0.00
897 82 0.01
898 157 0.02
899 421 0.06
900 18 0.00
901 76 0.01
902 145 0.02
904 4 0.00
905 72 0.01
906 493 0.07
907 131 0.02
908 1 0.00
909 2 0.00
912 2 0.00
913 1 0.00
914 2 0.00
915 3 0.00
916 9 0.00
917 8 0.00
918 2 0.00
919 3 0.00
920 93 0.01
921 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCTGTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACGTAGAGGGGGACCCG
ATGGATCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
Found at i:20011425 original size:26 final size:26
Alignment explanation
Indices: 20011389--20011439 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20011379 TGACTTAGGT
* * *
20011389 ATACGGAGTTCATTCTCAGTCTAAGC
1 ATACAGAGTTCATTCCCAATCTAAGC
20011415 ATACAGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
20011440 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:20014934 original size:26 final size:26
Alignment explanation
Indices: 20014904--20014956 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20014894 GTTGACTTAG
* *
20014904 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
20014930 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20014956 G
1 G
20014957 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20015804 original size:26 final size:26
Alignment explanation
Indices: 20015768--20015846 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20015758 GTTGACTTAG
20015768 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20015794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20015820 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20015846 G
1 G
20015847 ATTGGACTGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20016724 original size:26 final size:26
Alignment explanation
Indices: 20016688--20016740 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20016678 GTTGACGTAG
* *
20016688 GCATACGGAGTTTATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20016714 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20016740 G
1 G
20016741 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20019327 original size:760 final size:760
Alignment explanation
Indices: 20017868--20019670 Score: 3302
Period size: 760 Copynumber: 2.4 Consensus size: 760
20017858 CCCGAATCGT
* * * *
20017868 AAAATAGAAAACGAGACGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAA
1 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAA
* *
20017933 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
66 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
*
20017998 CCTTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGTTCGCTCG
131 CCTTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCG
20018063 CTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAATCTAAGATCAGACCGGAT
196 CTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAATCTAAGATCAGACCGGAT
20018128 TGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCGTCTACCATGC
261 TGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCGTCTACCATGC
20018193 TGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCCGGAGCATCACCA
326 TGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCCGGAGCATCACCA
20018258 GTGAACCTGACTGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
391 GTGAACCTGACTGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
20018323 GTGCGATGGGTGCTGGTAGTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTTGAGAAGT
456 GTGCGATGGGTGCTGGTAGTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTTGAGAAGT
20018388 CACCTCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
521 CACCTCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
20018453 AATGGTGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGATTTTTT
586 AATGGTGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGATTTTTT
20018518 TTGTGCATGGCAACAAAAATACAAGGATCATGACTACCGAGTTTGGGGCCAAAACTCCTTTCGAA
651 TTGTGCATGGCAACAAAAATACAAGGATCATGACTACCGAGTTTGGGGCCAAAACTCCTTTCGAA
20018583 AAAAATTTAAAAAATCCCGAACTCCAAAAATTTTGAAAATTTTGA
716 AAAAATTTAAAAAATCCCGAACTCCAAAAATTTTGAAAATTTTGA
20018628 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAA
1 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAA
20018693 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
66 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
20018758 CCTTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCG
131 CCTTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCG
20018823 CTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAATCTAAGATCAGACCGGAT
196 CTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAATCTAAGATCAGACCGGAT
*
20018888 TGAGGGTTGCGGTAGTAGGATCGACAGCACGTAGAAGGGGACCCGACCGATCCCGTCTACCATGC
261 TGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCGTCTACCATGC
20018953 TGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCCGGAGCATCACCA
326 TGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCCGGAGCATCACCA
20019018 GTGAACCTGACTGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
391 GTGAACCTGACTGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
20019083 GTGCGATGGGTGCTGGTAGTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTTGAGAAGT
456 GTGCGATGGGTGCTGGTAGTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTTGAGAAGT
20019148 CACCTCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
521 CACCTCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
20019213 AATGGTGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGATTTTTT
586 AATGGTGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGATTTTTT
20019278 TTGTGCATGGCAACAAAAATACAAGGATCATGACTACCGAGTTTGGGGCCAAAACTCCTTTCGAA
651 TTGTGCATGGCAACAAAAATACAAGGATCATGACTACCGAGTTTGGGGCCAAAACTCCTTTCGAA
20019343 AAAAATTTAAAAAATCCCGAACTCCAAAAATTTTGAAAATTTTGA
716 AAAAATTTAAAAAATCCCGAACTCCAAAAATTTTGAAAATTTTGA
20019388 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAA
1 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAA
* *
20019453 TTTGCAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTCCCTAAACCCACCTACCA
66 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * *
20019518 CCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCG
131 CCTTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCG
* ** ** * * * * * *
20019583 GTAACTCGTTTTGTCGGTTGGCATAGGCATACGGACTTCATTCCCAGTCTAAGATC-GCACTGGA
196 CTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAATCTAAGATCAG-ACCGGA
* * * *
20019647 TCGAGGGTTGTGGCAGCAGGATCG
260 TTGAGGGTTGCGGTAGTAGGATCG
20019671 GGAACACCCT
Statistics
Matches: 1010, Mismatches: 32, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
759 1 0.00
760 1009 1.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (760 bp):
AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
CCTTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCG
CTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAATCTAAGATCAGACCGGAT
TGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCGTCTACCATGC
TGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCCGGAGCATCACCA
GTGAACCTGACTGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTAGTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTTGAGAAGT
CACCTCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGTGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGATTTTTT
TTGTGCATGGCAACAAAAATACAAGGATCATGACTACCGAGTTTGGGGCCAAAACTCCTTTCGAA
AAAAATTTAAAAAATCCCGAACTCCAAAAATTTTGAAAATTTTGA
Found at i:20019804 original size:26 final size:26
Alignment explanation
Indices: 20019768--20019817 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
20019758 GTGGACTTAG
20019768 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTCA
20019794 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
20019818 ATGATCGCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTCA
Found at i:20021542 original size:26 final size:26
Alignment explanation
Indices: 20021506--20021557 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20021496 TTGACTTAGC
*
20021506 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
20021532 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
20021558 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:20022459 original size:26 final size:26
Alignment explanation
Indices: 20022407--20022459 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20022397 GTTGACTTAG
* * * *
20022407 GCATACGGAGTTCGTTCCCAGTGTAA
1 GCATACGCAGTTCATTCCCAATCTAA
20022433 GCATACGCAGTTCATTCCCAATCTAA
1 GCATACGCAGTTCATTCCCAATCTAA
20022459 G
1 G
20022460 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAATCTAA
Found at i:20024672 original size:26 final size:26
Alignment explanation
Indices: 20024636--20024688 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20024626 GTTGACTTAG
20024636 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20024662 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20024688 G
1 G
20024689 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20027552 original size:26 final size:26
Alignment explanation
Indices: 20027505--20027557 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20027495 GTTGACTTAG
*
20027505 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
* * *
20027531 GCATACGGAGTTCAGTCGCAGTTTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
20027557 G
1 G
20027558 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:20028434 original size:26 final size:26
Alignment explanation
Indices: 20028405--20028457 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20028395 GTTGACTTAG
20028405 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20028431 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20028457 G
1 G
20028458 ATCGGAATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20029758 original size:879 final size:884
Alignment explanation
Indices: 20024887--20030081 Score: 6736
Period size: 900 Copynumber: 5.8 Consensus size: 884
20024877 AGACTGAACT
* **
20024887 GAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAAGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
* * * * **
20024952 ACCATCG-CTGGAGCATCACCGGAGAACCTGACTGGCGGCATTGGGGTTCCGA-TGATAGGGGGG
66 ACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACTAACGGGGGGG
*
20025015 CCGACGGG-GGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCC
130 CCG--GGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
20025079 TATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
193 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
20025144 TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACCTTTTTCAAATGGTCACAAAATCTTATAC
258 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
20025209 ACTTCGAGTTTTTAGCTGAATTTTTTTT-TGCATGCCAATAAAAATACAAGGATCACATCTACCA
323 ACTTCGAGTTTTTAGCTG-ATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
20025273 AATTTAGGGCCAAAACTCTTTCCTGAAAAAATTTTAGAAAATCCCGAACCGTAAAAAGTTTCAAA
387 AGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTA-AAAATCCCGAACCGCAAAAAGTTTCAAA
* *
20025338 AATCGTGAAAGATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
450 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
20025403 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
515 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
20025468 AGCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCG
580 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
* *
20025532 ACCCACCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-GATCTAAGAT
645 -CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGAT
* * * * * * * *
20025596 TGGACCAGACTGAGGGTTGCGGCAGCAAGATCGATAGCATGCAGAGGGGGACCCGGTCGATCCCT
708 CGGACAAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * *
20025661 GGCTTACGCATCCCGCCCCTCT-GGCAGGCTGAGCGCCCGCACGGTCGTTTCGTGGGTTGACTTA
773 GGCTTGCTCATCCCGCCCCTCTAGCCA-GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* *
20025725 GGCATATGGAGCTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATCGGATCG
837 GGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AG-T-A-T--C----T-A-A---GATCG
* * * * * *
20025788 GATCGAGTGTTGTGGCAGCACATGCTAGGCTCGAGCGTGTGCTGGTGTCGCATTTTTCTTCGCCG
1 GA--G-G-GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
* * * * * * *
20025853 GGGCACCATCGTCGGAGCATTGCCGGAGAATCTGACCGACGGCATTAGAGTTCCG-GTGATCAGG
62 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACT-AACGGG
*
20025917 GGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACC
126 GGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
20025982 CCTATCCCTCA-CAAACCTCGAGAACTGACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
191 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
20026046 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGT
256 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
20026111 ACACTTCGAGTTTTTAGCTGA-TTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACC
321 ACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* ** * *
20026175 AAGTTTGGGGCCAAAACTTCTTCCGAAAAAAATTCAAAAAATCCCAAACCACAAAAAGTTTCAAA
386 AAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAATCCCGAACCGCAAAAAGTTTCAAA
* *
20026240 AATCATGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
450 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
20026305 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGCAATATGAAGATGTGCCTAAACCC
515 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
20026370 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCACCCG
580 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCG
* * *
20026435 TCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTTTAAG
641 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * ** *
20026500 ATCGGACCAA-ACCGAGGGATGCGACAGTAGGATCGAAAACACGCAGAGGGGGACCCGGCCAATC
706 ATCGGA-CAAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATC
* * * * * *
20026564 CCCGACTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCGCGCGCACGCTCATTTCTTGGGTTGACA
770 CCCGGCTTGCTCATCCCGCCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* *
20026629 TAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG-G-ATC--GGATC-
835 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTATCTAAGATCG
* * * * *
20026672 GAGTGTTGCGGCAGCACATGCTAGGCTCGAGCGTGTGCTGGTGCCACATTTTTCTTCACCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
* * * * * * * *
20026737 ACCATCGTCGAAGCATTGCTGGAGAACCTGACCGACGGCATTAGAGTTTCGGC-AATCGAGGGGG
66 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACTAA-CGGGGGGG
* * * *
20026801 ACGGAGAGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTA
130 CCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
20026866 TCCCCCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
20026931 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
260 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
20026996 TTCGAGTTTTTAGCTGAATTTTTTTT-TTCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
325 TTCGAGTTTTTAGCTG-ATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* ** * * * *
20027060 TTTGGGGCCAAAAATCCTTCAAAAAAAATTTTTAAAAGCCCGAACCGTAAAAAGTTTTAAAAATC
389 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* * *
20027125 GTGAAAAATAAAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
454 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
20027190 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATGTGAAGATGTGCCTAAACCCACCT
519 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
20027255 GCCACCCTATCGATCCACGGCTTGCACATCCCGTCACTCTGGCCGACGTAGT----GCCTGCCCA
584 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * * *
20027316 CTCGCCCGTTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC-
649 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACA
* ** * * * * *
20027380 CGAACCGAATGTTGCAGCAGCAAGATCGACAGCATGCAGAGGGGGACCCAACCGATCCCCGGCTT
714 AG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * * * *
20027445 G-TGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCAT
778 GCT-CATCCCGCCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
*
20027509 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAGTCGCAGTTTAAGATCGGACCG
842 ACGGAGTTCATTCCCAGTCTAAGCATAC-GAG-T-A-T--C----TAAGAT-----CG
* * * * **
20027567 AACCGAGGGTTGTGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG
1 ----GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
* * * * * * *
20027632 GGGCTCTATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTTCGACGATCGGGG
62 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACTAACGGGG
* * *
20027697 GGGCCGGGGAGGTGTGCGCACATGATGTGTGATGGGAGCTGGTACTTGGCCCTTACATTGGCCCC
127 GGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
** * *
20027762 CTATATCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTG
192 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * *
20027827 TTGCCAGTAGCCATTAAAGTGTCCGGAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTA
257 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
20027892 CACGTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
322 CACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
20027957 AATTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
387 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAA
* * *
20028022 ATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATT
451 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* ***
20028087 GTATGAATTTACAAGCCATAAAAAAGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA
516 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* *
20028152 CCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGT----GCCCGC
581 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* *
20028213 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
646 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* *** * * * * *
20028278 ACCAGGTTGCGGGTTGCAGCTGCAGGATC-AGTAGCACGCAGAGGGGGACCC-AGTCGATCCTCG
711 ACAAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGA-TCGATCCCCG
* * *** *
20028341 GCTTG-TGCATCTCGCCCCTCTGGTTGGCTGAGCGCCCGCACGCTCGTTTCACGGGTTGACTTAG
774 GCTTGCT-CATCCCGCCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
20028405 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAATAG
838 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG-----T---A-TCTAAGATC------G
* * *
20028468 ACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCACCGG
1 ---GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG
* * * *
20028533 GGCACCATCGTCGGAGCATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GTGG
63 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACTAACGGGGG
* * *
20028597 GGCCGGGG-GGTGTGCGCACATGATATGCGATGGGTGATGGTACTTGGCCCTTATATTGGCCTCC
128 GGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
20028661 TATCCCTCATCAAAGCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
193 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
20028726 TGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTAC
258 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
20028791 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
323 ACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
20028856 GATTGGGGCCAAAACTGCTTCCGAAAAAATTTTCAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
388 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAA
*
20028921 TCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
452 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
***
20028986 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
517 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
*
20029051 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
582 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * *
20029116 CGCCCGTCCACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTGGA
647 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * *
20029181 CAAGACCGAGGGTTACGGCAGCAGGATCGGCAACA-GATAAAGGGGGACCCGATTGATCCCCGGC
712 CAAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACG-CAGAGGGGGACCCGATCGATCCCCGGC
* * * * *
20029245 TTGCTCATCTCTCCCCTCTAGCCAACTGAGCG-CCGCACGTTCGTTTCGTGGGTTGACTTAGGCA
776 TTGCTCATCCCGCCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* *
20029309 TACGAAGTTCATTCACAGTCTAA-CAT-C-AG-A-CT-AGA-CG
841 TACGGAGTTCATTCCCAGTCTAAGCATACGAGTATCTAAGATCG
* * * **
20029346 GAGGTTTGCGACAGCATATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
* * * * * *
20029411 ACCATTGTCGAAACATCACCGAAGAACCTAACCGACGGCATTGGGGTTCCGACTAACGGGGGGGC
66 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACTAACGGGGGGGC
*
20029476 CGGGCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
131 C-GG-GGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
20029541 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCT
194 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
20029606 GCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
259 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
20029671 CTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
324 CTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** * * * *
20029736 TTTGGAACCAAAACGCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGGTTCAAAAAT
389 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * * *
20029801 CATCAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTCAAGGCTTAAGGGACCATTGT
453 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ** *
20029866 ATGAATTTACAAGCCACAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACC
518 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
20029931 TACCACCCTATCGA-CCACGGCTTGCGCATCCCGTCTCTCTGGCGGGCGTAGTGCCCGCCCGCCT
583 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
**
20029995 GCCCGCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
648 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * *
20030060 TAGATCGAGGGTTGTGGCAGCA
713 AAGACCGAGGGTTGCGGCAGCA
20030082 CATGCTGGGC
Statistics
Matches: 3815, Mismatches: 397, Indels: 187
0.87 0.09 0.04
Matches are distributed among these distances:
872 1 0.00
873 184 0.05
874 2 0.00
875 106 0.03
876 8 0.00
877 3 0.00
878 127 0.03
879 427 0.11
880 179 0.05
881 338 0.09
882 56 0.01
883 8 0.00
884 3 0.00
885 7 0.00
886 2 0.00
888 1 0.00
889 3 0.00
894 1 0.00
895 1 0.00
896 1 0.00
897 2 0.00
898 476 0.12
899 380 0.10
900 522 0.14
901 55 0.01
902 345 0.09
903 67 0.02
904 139 0.04
905 160 0.04
906 202 0.05
907 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACTAACGGGGGGGC
CGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAG
ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCT
CATCCCGCCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGAGTATCTAAGATCG
Found at i:20030863 original size:718 final size:717
Alignment explanation
Indices: 20029295--20031685 Score: 3666
Period size: 718 Copynumber: 3.3 Consensus size: 717
20029285 TCGTTTCGTG
* * * * * * * *
20029295 GGTTGACTTAGGCATACGAAGTTCATTCACAGTCTAACATCAGACTAGA-CGGAGGTTTGCGACA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGCGGCA
* ** * * *** * *
20029359 GCATATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGTCGAAA
65 GCACATGCTGGGCTCGGGCATGTGCTGGTGCTACTTTTTTCTTCGTCGGGGCACAATCACCGGAG
* * * *** * *
20029424 CATCACCGAAGAACCTAACCGACGGCATTGGGGTTCCGACTAACGGGGGGGCCGGGCGGGGGTGT
130 CATCATCGAAGAACCTGATCGACGGCATTGGGGTTCCGACGGTCGAGAGGGCC-GG-GGGGGTGT
*
20029489 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
193 GCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * * * *
20029554 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCCATT
258 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGTCATT
* * *
20029619 AAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
323 AAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTATACACTTCGAGTTTTTA
* * * ** *
20029684 GCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAACCAAAA
388 GCTAAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGACCAAAA
* *** * * *
20029749 CG-CCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGGTTCAAAAATCATCAAAAATAG
453 -GTCCTTCCAAAAAAATTTTAAAAAATCTCGAATGGCAAAAAGTTTCGAAAATCATGAAAAATAG
*
20029813 AAAA-TGAGTCGTCTTGCCATGAAACTTCATGTCAAGGCTTAAGGGACCATTGTATGAATTTACA
517 AAAACT-AGTCGTCTTGCCATTAAACTTCATGTCAAGGCTTAAGGGACCATTGTATGAATTTACA
*
20029877 AGCCACAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTAT
581 AGCCA-AAAATTGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTAT
20029942 CGACCACGGCTTGCGCATCCCGTCTCTCTGGCGGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTC
645 CGACCACGGCTTGCGCATCCCGTCTCTCTGGCGGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTC
20030007 GTTTTATC
710 GTTTTATC
* *
20030015 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTGTGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAG
*
20030080 CACATGCTGGGCTCGGGCATGTGTTGGTGCTACTTTTTTCTTCGTCGGGGCACAATCACCGGAGC
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCTACTTTTTTCTTCGTCGGGGCACAATCACCGGAGC
* * * * * *
20030145 ATCATCGGAGAACTTGATCGGCGGTATTGGGTTTCCGACGGTCGAGAGGGCCGGGGGGGTTTGCG
131 ATCATCGAAGAACCTGATCGACGGCATTGGGGTTCCGACGGTCGAGAGGGCCGGGGGGGTGTGCG
20030210 CACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
196 CACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
20030275 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGTCATTAAA
261 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGTCATTAAA
20030340 GTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT
326 GTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT
20030405 AAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGACCAAAAGTC
391 AAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGACCAAAAGTC
*
20030470 CTTCCAAAAAAATTTCAAAAAATCTCGAATGGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
456 CTTCCAAAAAAATTTTAAAAAATCTCGAATGGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
* * *
20030535 CTAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCA
521 CTAGTCGTCTTGCCATTAAACTTCATGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
20030600 TAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGACC
586 -AAAATTGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGACC
* * *
20030665 ACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCACCTGCCCGCCCGCTCGTTTT
650 ACGGCTTGCGCATCCCGTCTCTCTGGCGGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTT
*
20030730 GTC
715 ATC
* *
20030733 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGTGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAG
* *
20030798 CACATGCTGGGCTCGGGCCTGTGTTGGTGCTACTTTTTTCTTCGTCGGGGCACAATCACCGGAGC
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCTACTTTTTTCTTCGTCGGGGCACAATCACCGGAGC
* * * * * *
20030863 ATCATCGGAGAACTTGATCGGCGGTATTGGGTTTCCGACGGTCGAGAGGGCCGGGGGGGTTTGCG
131 ATCATCGAAGAACCTGATCGACGGCATTGGGGTTCCGACGGTCGAGAGGGCCGGGGGGGTGTGCG
20030928 CACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
196 CACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
20030993 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGTCATTAAA
261 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGTCATTAAA
* *
20031058 GTGTCTGAAATGGGGACACTTTTTTCAAACGGTCCCAAAATCTTATACACTTCGAGTTTTTAGTT
326 GTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT
* *
20031123 AAATTTTTTTATGCATGCCAACAAAAATACAGGGATCACATCTTCCAAGTTTGGGACCAAAAGTC
391 AAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGACCAAAAGTC
* *
20031188 CTTCCAAAAAACTTTTAAAAAATCTCGAATGGCAAAAAGTTTCGAAAA-AATGAAAAATAGAAAA
456 CTTCCAAAAAAATTTTAAAAAATCTCGAATGGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
20031252 CTAGTCGTCTTGCCATTAAACTTCATGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
521 CTAGTCGTCTTGCCATTAAACTTCATGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
20031317 AAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGACC
586 AAAA-TTGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGACC
20031382 ACGGCTTGCGCATCCCGTCTCTCTGGCGGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTT
650 ACGGCTTGCGCATCCCGTCTCTCTGGCGGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTT
20031447 ATC
715 ATC
* * *
20031450 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAG
* * ** * *
20031515 CACATGTTGGGCTCGGGCATGTGCT-GTGCCATA-TTTTTTCATCACCGGCGCACCATCACC-GA
66 CACATGCTGGGCTCGGGCATGTGCTGGTG-C-TACTTTTTTCTTCGTCGGGGCACAATCACCGGA
* * * * * *
20031577 GCATCGTCAAAGAACCTGATCGACGGCATTGGGGTTCCAATGGTAG-GGGGGACC-GGGGGGTGT
129 GCATCATCGAAGAACCTGATCGACGGCATTGGGGTTCCGACGGTCGAGAGGG-CCGGGGGGGTGT
* * * * *
20031640 ACGCACATTATGTGCGATTGGTGCTAGTACTTGGCCCTTATATTGG
193 GCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGG
20031686 TCACAAAATC
Statistics
Matches: 1546, Mismatches: 118, Indels: 19
0.92 0.07 0.01
Matches are distributed among these distances:
715 53 0.03
716 47 0.03
717 305 0.20
718 989 0.64
719 3 0.00
720 148 0.10
721 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (717 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCTACTTTTTTCTTCGTCGGGGCACAATCACCGGAGC
ATCATCGAAGAACCTGATCGACGGCATTGGGGTTCCGACGGTCGAGAGGGCCGGGGGGGTGTGCG
CACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGTCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT
AAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGACCAAAAGTC
CTTCCAAAAAAATTTTAAAAAATCTCGAATGGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
CTAGTCGTCTTGCCATTAAACTTCATGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
AAAATTGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGACCA
CGGCTTGCGCATCCCGTCTCTCTGGCGGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTTA
TC
Found at i:20032237 original size:26 final size:26
Alignment explanation
Indices: 20032208--20032260 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20032198 GTTGACTTAG
*
20032208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20032234 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20032260 G
1 G
20032261 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20033148 original size:26 final size:26
Alignment explanation
Indices: 20033112--20033162 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20033102 CTTGACTTAG
20033112 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20033138 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
20033163 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20033271 original size:904 final size:900
Alignment explanation
Indices: 20031683--20036593 Score: 6160
Period size: 904 Copynumber: 5.4 Consensus size: 900
20031673 GCCCTTATAT
* * *
20031683 TGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAC-AAAATA
1 TGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * ** * *
20031747 CAAAGATCACGTCTACCAAGTTTGGATCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAG
66 CAAGGATCACGTCTACCAAGTTTGG-GCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAA
* * ** * *
20031812 CCACATAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTG
130 CCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * *
20031877 AAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAGAATGTCACTGGCATGGAGAAATATG
195 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * * * * *
20031941 AATATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATCTCATCTCTCTGGTC
260 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
20032006 GACGTA--G--CGCCCGCCCG--C-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
325 GACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * *
20032064 TCCCAGTCTAAGATTGGACC-AGACCGAGGGTTGCAGCAGTAGGATCGGTAGCATGTAGCGGGGG
390 TCCCAGTCTAAGATTAGACCGA-ACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGAGGG
** * * *
20032128 ACCCGATCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCAGCTGAGCGCCCGTACGCTCGTTT
454 ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTT
* *
20032193 TGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCTGTCT
519 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* * * * * *
20032258 AAGATCGGACCGGACCGAGTGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCAT
584 AAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCAT
** * * * *
20032323 TTTTCTTCATCGAGGCACCATCATCGGGGCATCGTCGGAGAACCTGACTGGAGGCATTGGGGTTC
649 TTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTCGGGTTC
*
20032388 CAGCGATCGGTGGGGCCGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
714 CGGCGATCGG-GGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
20032453 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTTACAGAGCATTTGAGA
777 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* ** *
20032518 TTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGTATTTTTTTCAAA
842 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAA
* * *
20032577 TGGTCACAAAATCTTGTACAATTTGAATTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATA
1 TGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
20032642 CAAGGATCACGTCTACTAAGTTTGCGGCCAAAAATCCATCCAAAAAAATTTTAAAAAATCCCGAA
66 CAAGGATCACGTCTACCAAGTTTG-GGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAA
** ** * *
20032707 CCATAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTG
130 CCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
20032772 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCATGCACAAATATG
195 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * * * * **
20032837 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGTGCATCTCGTCTCTCCGATC
260 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* **
20032902 GACGTAGTGCCCGCCCGCCAGCCCGTCCGCTCGTTTCATTAGTTGGCTTAGGCATACGGAGTTCA
325 GACGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
20032967 TTCCCAATCTAAGATTAGACCGAACCAAGGGTTACAGCAGCAAGATTGGTAACACGCAGAGAGGG
389 TTCCCAGTCTAAGATTAGACCGAACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGAGGG
* * * * * * *
20033032 ACCCGGCTGATCCTCGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCCCATACGCTTGTTT
454 ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTT
* * *
20033097 CGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCT
519 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* * * *
20033162 ATGATCGGACCAGACCGAGGGTTATGACAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCAT
584 AAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCAT
* ** * ** * ** * ** *
20033227 TTCTCTTCGTTGGGGCACCATCACCGGAGAATCACCGTAGAACCTGACCAGCAGCATT-GGGATT
649 TTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTCGGG-TT
* *
20033291 CCGGCGATCGGGGGGGCCGGGGGAGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTAGC
713 CCGGCGATC-GGGGGGCC-GGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
20033356 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGA
775 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
20033421 GATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGT-TCGAAATGAGGACACTTTTTTCAAA
840 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATG-GGACACTTTTTTCAAA
* * * * * *
20033482 TGGCCACAAAAACTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAATAAAAATA
1 TGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * **
20033547 CAAGGATCACGTCTTCAAAGTTTGGGTTC-AAAACCCTTCCAAAAAAATATTAAAAAATCAAGAA
66 CAAGGATCACGTCTACCAAGTTTGGG-CCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAA
*
20033611 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
130 CCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
20033676 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGGATTGGCATGCAGAAATATG
195 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
20033741 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC-CTCTGGCC
260 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
** ** * * * * *
20033805 GACGTAGTGCTTGCTTGCCCGTCCGCCCGTTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
325 GACGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
20033870 TTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCAGTAGCAGGATCGGCAGCACACAGAGGGGG
389 TTCCCAGTCTAAGATTAGACCGAACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGAGGG
* ** * *
20033935 ACCCGGCCGATCCCTGGCTTGCATATCCCACCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTT
454 ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTT
* *
20034000 CGTGGGTTGACTTAGGCATACAGAGTTCATTCACAGTCTAAGCATACGAAGTTCATTCCCAGTCT
519 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
** ** ***
20034065 AAGATCAAACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCAT
584 AAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCAT
* * * *
20034130 TTTTCTTCGCCAAGGCACCATCGTCGGAGCATCGTCGAAGAACCTGACCT-GCGGCGTTCGAGTT
649 TTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CTGGCGGCATTCGGGTT
* * *
20034194 CCGGCGATCAGGGGGGCC-GGGGGGTGTGCGCACATAATGTGCGATGGATGCGGGTACTTGGCCC
713 CCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
20034258 TTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGA
777 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
20034323 TTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
842 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAA
* * * *
20034383 AGGTTACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTATGCATACCAACAAAAATA
1 TGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
20034448 CAAGGATCATGTCTACCAAGTTTGGGGCTAAAACA-CCTTTCGAAAAAATTTTAAAAAAT-CCGT
66 CAAGGATCACGTCTACCAAGTTT-GGGCCAAAA-ATCCTTCCAAAAAAATTTTAAAAAATCCCG-
** * * *
20034511 AACCGCAAAAAGTTTCCCAAATCGTG-AAAA-AAAAAATGAGTCGTCTTGCCATGGAACTTCACG
128 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
20034574 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
193 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
20034639 TGAAGATGTGCGTAAACCCACCTACCACTCGATCGATTCACGGCTTGCGCATCCCGTCTCTCTGG
258 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* *
20034704 CCGGCATAGT--------GCCCG--C-CCGCTCGTTTCAATCGGTTGGCTTAGGCATACGGAGTT
323 CCGACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTC-ATCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
20034758 CATTCCCAGTCTAAGATCAGACC-AGACCAAGGGTTACGGTAGCAGGATCGACAACACGCAAAGA
387 CATTCCCAGTCTAAGATTAGACCGA-ACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGA
* * *
20034822 GGGACACGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
451 GGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCG
20034887 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
516 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * ** *
20034952 TCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCATGCACTGGTGTCG
581 TCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCG
* * * *
20035017 CATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCT-AATCGGCGGCGTTCGG
646 CATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACT-GGCGGCATTCGG
*
20035081 GTTCTGGCGATCGGGGGGGCCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTG-TGAGTACTT
710 GTTCCGGCGATC-GGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTG-GTACTT
* **
20035145 GGCCCTTATATTGGCCCCCTATCCCTCATCATACCTTAAGAACTCACACCCCCTTAAAGAGCATT
772 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
20035210 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGAGAACACTTTTTTCAAA
837 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGACACTTTTTTCAAA
* * *** * *
20035275 TGGTTACAAAATCTTGTACACTTTGAA-TTTTAGCTGAATTTTTTTGTGCATATGAAAAAAAATG
1 TGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * **
20035339 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTGGAA
66 CAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAA
* *
20035404 CCGCAAAAAGTTTCCAAAATCGTGAAAAA-AAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
130 CCGCAAAAAGTTTCAAAAATCATGAAAAATAA-AAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
20035468 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
194 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* * *
20035533 TAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCTCGTCTCTCTGGC
259 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * ** * ** *
20035598 CGGCATAGTGCCCGCCTGCCCG--C-CCTTTCGTTTCGTTTGTTGGCTTAGGTATACGGAGTTCA
324 CGACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * * * ** ** *
20035660 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAATAGGATTGGCAGCACGCAGA-AGGG
389 TTCCCAGTCTAAGATTAGACCGAACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGA-GG
* * * * *
20035724 GACACGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTT
453 GACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTT
**
20035789 TCGTAGGTTGACTTAGACATACGGAGTTCATTCCTAGTCTAAGCATACAAAGTTCATTCCCAGTC
518 TCGT-GG--G---T-----T---GA---C--T--TAG-----GCATACGGAGTTCATTCCCAGTC
* * * *
20035854 TAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCCGCAGCACATGCT
557 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCT
* * * *
20035919 GGGC-T---C--GGGCTGGTGCCGCCTTTTTCTTCGCC-AGGGCACCATCGTCGGATCATCATCG
622 GGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGA-GGCACCATCGTCGGAGCATCGTCG
* * * * * * * *
20035977 GAGAACTTGACCGGCGGCACTAGGGTTCCGTCGATC-GGGGGCTGAGGGGGTGTGCACACATGAT
686 GAGAACCTGACTGGCGGCATTCGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * * *
20036041 GTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAATCCTCGACAACT
751 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
20036106 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGT-TTTGA
816 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
20036170 AATGGAGACACTTTTTTCAAA
881 AATGG-GACACTTTTTTCAAA
* * * * * * *
20036191 TGGTCACAAAATCTCGTACACTTTGAGTTTTTAACCGATTTTTTTTGTGCATGCCAAAAAAAATA
1 TGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
20036256 CAAGGATCACGTCTACCAAGTTTCGAGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAA
66 CAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAA
* * * * *
20036321 CTGCAAAAAGTTTTAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCGACGAAACTTCACGTG
130 CCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
20036386 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
195 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * * *
20036451 AAGATGTGCCTAAACCCACCTACCACCCTATGGATGCACGGCTTGCGCATCCCGTCTCTCTAGTC
260 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
20036516 GACGTAGTGCCCGCCTGCCCGCCCGCCGGTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
325 GACGTAGTGCCCGCCCGCCCGCCCGCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
20036581 TTCCCAGTCTAAG
389 TTCCCAGTCTAAG
20036594 GTCATACCAT
Statistics
Matches: 3519, Mismatches: 412, Indels: 145
0.86 0.10 0.04
Matches are distributed among these distances:
888 1 0.00
889 10 0.00
890 323 0.09
891 116 0.03
892 186 0.05
893 167 0.05
894 52 0.01
895 127 0.04
896 113 0.03
898 1 0.00
899 1 0.00
900 416 0.12
901 148 0.04
902 53 0.02
903 349 0.10
904 541 0.15
905 227 0.06
906 1 0.00
911 1 0.00
914 2 0.00
915 1 0.00
916 46 0.01
917 415 0.12
918 12 0.00
919 3 0.00
920 70 0.02
921 49 0.01
922 1 0.00
925 1 0.00
926 86 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (900 bp):
TGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
CGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
ACGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATTAGACCGAACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGAGGGAC
CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
GATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTT
TTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTCGGGTTCCG
GCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAA
Found at i:20034052 original size:26 final size:26
Alignment explanation
Indices: 20034015--20034067 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20034005 GTTGACTTAG
20034015 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
20034041 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCACAGTCTAA
20034067 G
1 G
20034068 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:20034942 original size:26 final size:26
Alignment explanation
Indices: 20034905--20034957 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20034895 GTTGACTTAG
*
20034905 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20034931 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20034957 G
1 G
20034958 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20035842 original size:26 final size:26
Alignment explanation
Indices: 20035813--20035883 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
20035803 AGACATACGG
*
20035813 AGTTCATTCCTAGTCTAAGCATACAA
1 AGTTCATTCCCAGTCTAAGCATACAA
*
20035839 AGTTCATTCCCAGTCTAAGCATACGA
1 AGTTCATTCCCAGTCTAAGCATACAA
20035865 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
20035884 ATTGGACTAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATACAA
Found at i:20036493 original size:917 final size:924
Alignment explanation
Indices: 20034913--20036613 Score: 2557
Period size: 917 Copynumber: 1.8 Consensus size: 924
20034903 AGGCATACGG
20034913 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
1 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * *
20034978 GCGGTAGCACATGCTGGGCTTGGGCATGCACTGGTGTCGCATTTTTCTTCACCGAGGCACCATCG
66 GCCGCAGCACATGCTGGGCTTCGG-A-G-ACTGGTGCCGCATTTTTCTTCACCGAGGCACCATCG
* * ** * * *
20035043 CCGGAGCATCGTCGGAGAACCTAATCGGCGGCGTTCGGGTTCTGGCGATCGGGGGGGCCGGGTGG
128 CCGGAGCATCATCGGAGAACCTAACCGGCGGCACTAGGGTTCCGGCGATC-GGGGGGCCGAGTGG
* *
20035108 GGTGTGCGCACATGATGTGCGATGGGTGTGAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
192 GGTGTGCACACATGATGTGCGATGGGTGTGAGAACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
20035173 TCATACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
257 TCATACCTCAACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
20035238 CCATTAAAGTATCTGAAATGAGAACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAAT
322 CCATTAAAGTATCTGAAATGAGAACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTTGAAT
* * ** * * *
20035303 TTTAGCTGAATTTTTTTGTGCATATGAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCC
387 TTTAACCGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGAGCC
* ** * *
20035368 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTGGAACCGCAAAAAGTTTCCAAAATCGTGAAAAA
452 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
*
20035433 AAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
517 AAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
20035498 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCT
582 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
20035563 ATCGATCCACGGCTTGCGTATCTCGTCTCTCTGGCCGGCATAGTGCCCGCCTGCCCG-C-CC-TT
647 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACATAGTGCCCGCCTGCCCGCCGCCGTT
** * *
20035625 TCGTTTCGTTTGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGG
712 T-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGG
20035690 GTTGTGGCAATAGGATTGGCAGCACGCAGAAGGGGACACGACCGATCCCCGGCTTGCGTATCCCG
776 GTTGTGGCAATAGGATTGGCAGCACGCAGAAGGGGACACGACCGATCCCCGGCTTGCGTATCCCG
20035755 CCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTAGGTTGACTTAGACATACGGAGTTCAT
841 CCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTAGGTTGACTTAGACATACGGAGTTCAT
20035820 TCCTAGTCTAAGCATACAA
906 TCCTAGTCTAAGCATACAA
* *
20035839 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTT
1 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * *
20035904 GCCGCAGCACATGCTGGGC-TCGG-G-CTGGTGCCGCCTTTTTCTTCGCC-AGGGCACCATCGTC
66 GCCGCAGCACATGCTGGGCTTCGGAGACTGGTGCCGCATTTTTCTTCACCGA-GGCACCATCGCC
* * * * *
20035965 GGATCATCATCGGAGAACTTGACCGGCGGCACTAGGGTTCCGTCGATC-GGGGGCTGAG-GGGGT
130 GGAGCATCATCGGAGAACCTAACCGGCGGCACTAGGGTTCCGGCGATCGGGGGGCCGAGTGGGGT
*
20036028 GTGCACACATGATGTGCGATGGGTGCTG-GAACTTGGCCCTTATATTGGGCCCCTATCCCTCATC
195 GTGCACACATGATGTGCGATGGGTG-TGAGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
20036092 A-ATCCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGC
259 ATA-CCTCAACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
20036156 CATTAAAGT-TTTGAAATG-GAGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTTGAGT
323 CATTAAAGTATCTGAAATGAGA-ACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTTGA-A
* *
20036219 TTTTAACCGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGAGC
386 TTTTAACCGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGAGC
* * *
20036284 CAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCATGAAAA
451 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* *
20036349 ATAA-AAAATGAGTCGTCTTGCGACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
516 A-AAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
20036413 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
580 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
20036478 CTATGGATGCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCTGCCCGCCCGCC
645 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACATAGTGCCCGCCTGCCCG-CCGCC
* * *
20036543 GGTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTCATACCATATCG
709 -GTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCG
20036608 AGGGTT
773 AGGGTT
20036614 ACGGTAGCAC
Statistics
Matches: 694, Mismatches: 70, Indels: 27
0.88 0.09 0.03
Matches are distributed among these distances:
915 2 0.00
916 47 0.07
917 414 0.60
918 12 0.02
919 2 0.00
920 71 0.10
921 59 0.09
922 4 0.01
925 3 0.00
926 80 0.12
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (924 bp):
AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
GCCGCAGCACATGCTGGGCTTCGGAGACTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCG
GAGCATCATCGGAGAACCTAACCGGCGGCACTAGGGTTCCGGCGATCGGGGGGCCGAGTGGGGTG
TGCACACATGATGTGCGATGGGTGTGAGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAT
ACCTCAACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTATCTGAAATGAGAACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTTGAATTTTA
ACCGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGAGCCAAAA
CTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAAAGA
AAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACATAGTGCCCGCCTGCCCGCCGCCGTTTGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGT
GGCAATAGGATTGGCAGCACGCAGAAGGGGACACGACCGATCCCCGGCTTGCGTATCCCGCCCCT
CTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTAGGTTGACTTAGACATACGGAGTTCATTCCTA
GTCTAAGCATACAA
Found at i:20037330 original size:717 final size:715
Alignment explanation
Indices: 20035857--20037314 Score: 2169
Period size: 717 Copynumber: 2.0 Consensus size: 715
20035847 CCCAGTCTAA
*** * * * * * *
20035857 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCCGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCATAC-ATATCGAGGGTTACGGTAGCACGTGCTGGG
* * ** *
20035922 CTC--G---G-GCTGGTGCCGCCTTTTTCTTCGCCAGGGCACCATCGTCGGATCATCATCGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCACCGGAGCATCATCGGAGA
* * * *
20035981 ACTTGACCGGCGGCACTAGGGTTCCGTCGATCGGGGGCTGAGGGGGTGTGCACACATGATGTGCG
130 ACCTGACCGACGGCACTAGGGTTCCGACGATCGGGGGCCGAGGGGGTGTGCACACATGATGTGCG
*
20036046 ATGGGTGCTGGAACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAATCCTCGACAACTCACAC
195 ATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGACAACTCACAC
* *
20036111 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTTTTGAAATGGA
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTCTGAAATGGA
* * * *
20036176 GACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTTGAGTTTTTAACCGATTTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTCATACACTTCGAGTTTTTAACCGAATGTTTTTGTGC
* * *
20036241 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGAGCCAAAACTCCTTTCAAAAAAATT
390 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTACGAGCCAAAACCCCTTCCAAAAAAATT
* * * *
20036306 TTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCG
455 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
20036371 ACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
20036436 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATGCACGGCTTGCGCAT
585 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT
* * * * * *
20036501 CCCGTCTCTCTAGTCGACGTAGTGCCCGCCTGCCCGCCCGCCGGTTTGTTTCGTCGGTTGGCTTA
650 CCCGTCTCTCTAGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTA
20036566 G
715 G
* *
20036567 GCATACGGAGTTCATTCCCAGTCTAAGGTCATACCATATCGAGGGTTACGGTAGCACGTGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCATA-CATATCGAGGGTTACGGTAGCACGTGCTGGG
* ** *
20036632 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCACTGGGGCACCATCACCGGAGCATCGTCGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCACCGGAGCATCATCGGAGA
* *
20036697 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCACAGATGATGTG
130 ACCTGACCGACGGCACTAGGGTTCCGACGATC--GGGGGCCGAGGGGGTGTGCACACATGATGTG
* *
20036761 CGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCCAA-CCTCGAGAACTCA
193 CGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAATCCTCGACAACTCA
*
20036824 CACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-TCTGAAA
* * *
20036889 TGGGGACACTTTTTTCAAATGGTCACAAAATCTCATACACTTCGAGTTTTTAGCTGAATGTTTTT
321 TGGAGACACTTTTTTCAAATGGTCACAAAATCTCATACACTTCGAGTTTTTAACCGAATGTTTTT
* * * *
20036954 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACCCCTTCCTAAAA
386 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTACGAGCCAAAACCCCTTCCAAAAA
* *
20037019 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
* *
20037084 TGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
20037149 ATTGGCACGCAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
581 ATTGGCACGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
* *
20037214 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCTCGCCCGCTCGTTTCGTCAGTTG
645 CGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCAGTTG
20037279 GCTTAG
710 GCTTAG
* * *
20037285 GCATACGAATTTCATTCCTAGTCTGAGATC
1 GCATACGAAGTTCATTCCCAGTCTAAGATC
20037315 GGTCTGACTG
Statistics
Matches: 665, Mismatches: 71, Indels: 16
0.88 0.09 0.02
Matches are distributed among these distances:
710 55 0.08
711 1 0.00
712 1 0.00
715 1 0.00
716 167 0.25
717 296 0.45
718 144 0.22
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (715 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCATACATATCGAGGGTTACGGTAGCACGTGCTGGGC
TCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCACCGGAGCATCATCGGAGAA
CCTGACCGACGGCACTAGGGTTCCGACGATCGGGGGCCGAGGGGGTGTGCACACATGATGTGCGA
TGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGACAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTCTGAAATGGAG
ACACTTTTTTCAAATGGTCACAAAATCTCATACACTTCGAGTTTTTAACCGAATGTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTACGAGCCAAAACCCCTTCCAAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
CGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATC
CCGTCTCTCTAGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
Found at i:20038164 original size:26 final size:26
Alignment explanation
Indices: 20038134--20038184 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20038124 TTAACTTAGG
20038134 CATATGGAGTTCATTCCCAGTCTAAC
1 CATATGGAGTTCATTCCCAGTCTAAC
20038160 CATATGGAGTTCATTCCCAGTCTAA
1 CATATGGAGTTCATTCCCAGTCTAA
20038185 GATCGGACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATATGGAGTTCATTCCCAGTCTAAC
Found at i:20039189 original size:26 final size:26
Alignment explanation
Indices: 20039153--20039204 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20039143 TGACTGTGGC
*
20039153 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCAGTCCCAGTCTAAGA
* *
20039179 ATACGGAGTTCAGTCCTAGTCTAAGA
1 ATACGAAGTTCAGTCCCAGTCTAAGA
20039205 TCGGATCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCAGTCCCAGTCTAAGA
Found at i:20040075 original size:26 final size:26
Alignment explanation
Indices: 20040045--20040094 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20040035 GACTTAGCCG
*
20040045 TACGGAGTTCATTTCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
20040071 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20040095 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Done.