Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 115 of 195
Found at i:20040508 original size:26 final size:26
Alignment explanation
Indices: 20040475--20040529 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
20040465 GTTTGGGGCC
**
20040475 AAAACTCATTCTG-AAAAAATTTTAA
1 AAAACTCAAACTGTAAAAAATTTTAA
*
20040500 AAAATCTCAAACTGTAAAAAGTTTTAA
1 AAAA-CTCAAACTGTAAAAAATTTTAA
20040527 AAA
1 AAA
20040530 TCGTGAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.16
26 7 0.28
27 14 0.56
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (26 bp):
AAAACTCAAACTGTAAAAAATTTTAA
Found at i:20040940 original size:26 final size:26
Alignment explanation
Indices: 20040904--20040956 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20040894 GTTGACTTAG
*
20040904 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20040930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20040956 G
1 G
20040957 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20041824 original size:26 final size:26
Alignment explanation
Indices: 20041795--20041848 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
20041785 TGGGTTGACG
20041795 TAGGCATACGGAATTCATTCCCAGTC
1 TAGGCATACGGAATTCATTCCCAGTC
*
20041821 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAATTCATTCCCAGTC
20041847 TA
1 TA
20041849 AGATCAAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAATTCATTCCCAGTC
Found at i:20044517 original size:26 final size:26
Alignment explanation
Indices: 20044481--20044533 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20044471 GTTGACTTAG
20044481 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20044507 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20044533 G
1 G
20044534 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20045405 original size:26 final size:26
Alignment explanation
Indices: 20045375--20045427 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20045365 GTTGACTTAG
* *
20045375 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCACAATCTAA
*
20045401 GCATACAGAGTTCATTCACAATCTAA
1 GCATACAAAGTTCATTCACAATCTAA
20045427 G
1 G
20045428 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCACAATCTAA
Found at i:20046313 original size:26 final size:26
Alignment explanation
Indices: 20046277--20046327 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20046267 TTGACTTAGG
20046277 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
20046303 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
20046328 GATCAAACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:20047215 original size:26 final size:26
Alignment explanation
Indices: 20047179--20047231 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20047169 GTTAGCTTAG
20047179 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20047205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20047231 G
1 G
20047232 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20049006 original size:26 final size:26
Alignment explanation
Indices: 20048977--20049029 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20048967 GTTGGCTTAG
*
20048977 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20049003 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20049029 G
1 G
20049030 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20049903 original size:26 final size:26
Alignment explanation
Indices: 20049873--20049925 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20049863 GTTGACTTAG
20049873 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
*
20049899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
20049925 G
1 G
20049926 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:20050802 original size:26 final size:26
Alignment explanation
Indices: 20050773--20050825 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20050763 GTTAACTTGG
** *
20050773 GCATACGGTGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20050799 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20050825 G
1 G
20050826 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20051709 original size:26 final size:26
Alignment explanation
Indices: 20051669--20051721 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20051659 GTTGACTTAG
**
20051669 GCATACAGAGCTCATTCGTAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
* *
20051695 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
20051721 G
1 G
20051722 ATCAAACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:20052590 original size:26 final size:26
Alignment explanation
Indices: 20052554--20052606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20052544 GTTGACTTAG
*
20052554 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20052580 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20052606 G
1 G
20052607 ATCGGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20053287 original size:901 final size:899
Alignment explanation
Indices: 20040157--20055064 Score: 19552
Period size: 894 Copynumber: 16.6 Consensus size: 899
20040147 GCAGGGGCAC
* * * * ** * * *
20040157 CATCACCGGAAAACCTAATCGACAGCAAAGGGGTTTCGACAATCGAGGGGGTCGGGGGGGTGTGC
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGC
* * * * *
20040222 GCATATGATGTGTGATGGGTACTGGCACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAAGC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
20040286 TCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
20040351 AGTGTAC-GAAATGGGGACACTTTTTTCCAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
195 AGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
20040415 TTGAATTGTTTTGTGCATGCCAACAAAAATAGAAGGATGACGTCTACCAAGTTTGGGGCCAAAAC
259 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * * *
20040480 TCATTCTGAAAAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAA
324 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * *
20040545 AATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGT
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
20040610 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATTGA
454 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * *
20040675 TCCACGGTTTGCGCATCCCCTGTCTCTTGCCGACGTAGT----GCCTGCCTG--C-TT-GTTTCG
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCG
*
20040732 TCGGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGAT-AGGACCAGACTGAGGGTTGCGG
584 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACTGAGGGTTGCGG
* *** * * * * * **
20040796 CAGTAGGATCAAAAGCATGCAGAGGGGGACCTGACCAATCCCCGACTTACGCATCCCTTCCCTCT
648 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
20040861 GGCCGGTTGAGCGCCCGAATGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGT
713 GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
*
20040926 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
778 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * *
20040991 TAGGCTCGAGCATGTGATAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
843 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
** * * *
20041048 CATCGTCGGAGGACCTGACCGACGACATTGGGGTTCCGACGAT--------CGGAGGGGTGTGCG
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCG
*
20041105 -ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCT
66 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
20041169 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
131 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
20041234 GTGTCTGAAATGGGGACA-TTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
196 GTGTCTGAAATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
20041298 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACT
260 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
20041363 TCTTACGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAGTAGAAA
325 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
20041428 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
20041493 AAAAAAATGGCATTGCCACACAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGAT
455 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
20041558 TCAAGGCTTGCGCATCCCATCTCTCTGGCCGAG-GTAGTGCCCGCTCGCTCGCCTGCCCGCTCGT
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCG-GCGTAGTGCCCG--C-C-CGCCCGCCCGTTCGT
* * * * * ** **
20041622 TTCATCGGTTGGCTTAAGCATACAGAGTCCATTCCTAGTCTAAGATCAGACTGGACCAAGGGTTG
580 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* * * * *
20041687 TGGTAGCAGGATCAGCAGCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCC
645 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* ** * * * * *
20041752 TCTGGGCGATTGAGCACCCGCATGCTCGTTTCGTGGGTTGACGTAGGCATACGGAATTCATTCCC
710 TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
20041817 AGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCACA
775 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACA
* * *
20041882 TGCTGGGCTTGGGCATGTGCTAGTGCCGCATTTTTCATCGTCGGGGCACCATC-TCCGGAG
840 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-CGGAG
* * * * * *
20041942 CATCATCGGAGAACCTGACTGGCAGCATTGGGGTTACTACGATCGGGGGGGCCGGCGGGGGGTGT
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-G-GGGGGGTGT
* * *
20042007 ACGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAT
63 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
20042072 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTACTGCTATTAGCCATT
128 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
20042137 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTA
193 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
20042202 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCCCCTCTACCAAGTTTGGGGCCAAAA
258 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
20042267 ATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGA
323 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* * *
20042332 AAACGAGTCGTCTCGCCATCAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAG
388 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
20042397 TCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATTG
453 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
20042462 ATCCACGGTTTGCGCATCCCGTGTCTCTTGCCGGCGTAGT----GCCTGCCTG--C-TT-GTTTC
518 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTC
** * *
20042519 GTCAATTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGAT-AGGACCAGACTGAGGGTTGTG
583 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACTGAGGGTTGCG
* * ** * * * * **
20042583 GTAGTAGGATCAACAGCATGCAGAGGGGGACCCGGA-CAATCCCCGACTTACGCATCCCTTCCCT
647 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * * *
20042647 CTGGCCGGTTGAGCGCCCGAACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTGATTCCCA
711 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
20042712 GTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACAT
776 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACAT
* * * * * * *
20042777 GCTAGGCTCGAGCATGTGATAGTGCCACATTTTTCTTTGCCGGGGCACCATCGTCGGAG
841 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * *
20042836 CATCGCCGGAGGACCTGACCGACGACATTGGGGTTCCGGCGATTGGGGGGCCGGGGGGTGTGTGC
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-GTGTGC
* * *
20042901 GCAGATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
20042966 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
20043031 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
20043096 TGAATTTTTTTGTTCATGTCAACAAAAATACAAGTATCACGTCTACTAAGTTTGGGCCCAAAACT
260 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * *
20043161 CCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAGGTTTAAAAAATCATGAAAAATAGAAA
325 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * *
20043226 GCGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCGTTGCATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
20043291 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
455 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
20043356 CCACAGCTTGCGCATCCCGTCTCTCTGGCTGACGTTGCGCCCGCCCGCCCGCCCGCCCACTCGTT
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG----TTCGTT
* * *
20043421 TCGTCGGTTGGCTTAGGCATACGGAGTTCA-TCCCTAGCCTAAGATCAAACCAGACCGAGGGTTG
581 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACTGAGGGTTG
* * * * * * * *
20043485 CAGCAGTAGGATCAGCAGGACACAGAGGGGGACCCTG-TCGATCCCCGGCTTGCACATCCCACCC
645 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCC
* * * **
20043549 CTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACAAAGTTCATTCC
709 CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * ** *
20043614 CTGACTAAGCATACGGAGTTGATTCCCAGTCTAAGATCAGACCTAACCGAGGGTTACGGCAGCAC
774 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAC
** ** *
20043679 ATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCACCGAGGCACCATCGTCGGAG
839 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * * *
20043740 -A--ACC--TGAA-C-G---G-TGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGAGGGCGTGC
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGC
* *
20043794 GCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACG
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
20043859 TCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
20043924 AGTGTCCGAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
195 AGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
20043989 CTG-ATTTTTTTGTGCATGCC-ACAAAAAATACAAGAATCACATCTACCAAGTTTGGGGCCAGAA
259 CTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
20044052 CTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
323 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
20044117 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAA
388 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
20044182 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
453 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
20044247 ATCCACGCCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C--TCATTTC
518 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTC
*
20044308 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TCGAGGGTTGCG
583 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCG
* * * * *
20044372 GCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGCGTATCCCGCCCCTC
647 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * ** *
20044437 TGGCCTGCTGAGCGCCCGCACGCTCGTTTTTTAGGTTGACTTAGGCATACGGAGTTCATTCCCAG
712 TGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * *
20044502 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGTAGCACATG
777 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATG
* * *
20044567 CTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAG
842 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * * *
20044625 CATCGCCGGAGAACTTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGG-CTGGGGGGTGTGCA
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCG
* * * * *
20044689 CACATGATGTGTGGTGGGTGCTCGTACTTGGCCCTTATATTGGCCCCTTATCCCCCATCAAACCT
66 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
20044754 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAA
131 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * **
20044819 GTGTTTGAAATGGGGTCACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAATT
196 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
** *
20044884 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGTGTCTACCAAGTTTCGGGCCAAAACTC
261 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* *
20044949 CTTCC-AAAAGAATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
326 CTTCCGAAAA-AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * *
20045013 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACGTTGTATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
20045078 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
455 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
20045143 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG--C--TCGTTTCGT
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGT
* * * *
20045204 CGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCAGCA
585 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
* * * * * ** * * *
20045269 ACAAGATTGGCAGCATGCAGAGGGGCACCCGGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTGA
650 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * **
20045334 CCGACTGAGCGCTCGCACACTCATTTCATAGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCT
715 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
20045399 AAGCATACAGAGTTCATTCACAATCTAAGATCAGACCGGACCGAGTGTTGCAGCAGCACATGCTG
780 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * *
20045464 GACTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTCGAAG
845 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * * *
20045519 CATCGCCAGAGAACCTAACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCAGGGGGGTGTGT
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGC
* *
20045584 GCACATGATGTGCGATGGGTTCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
20045649 TTGAGAAGTCGCACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
20045714 AGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTGGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
20045779 TGAATTTTTTTGTGCATGCCAACAAGAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACT
260 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** * * ** *
20045844 CCTTTCG-AAAAATTTTAAAAAATCTTGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
325 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
*
20045908 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
20045973 ATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
455 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
20046038 CCACGGCTTGCGC-TCCCGTCTCTCTAGTCGGCGTAGTGCCCACCCACCCACCCGCTCGCTCATT
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-T---TCGTT
* * ** *
20046102 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACTAAGGGTTGC
581 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
* * * * * * * ** *
20046167 AGCAGGAGGATTGGCAGCATGCAGA-GGGGACCC-AGCCAACCCCCGACTCACGCATCCAGCCCC
646 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCC
*
20046230 TTTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
710 TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * * *
20046295 AGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGACAGCAAA
775 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACA
* * * *
20046360 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT-TTTGTTGGGGCACCATCATTGGAG
840 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * *
20046419 CATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGCCCGGGGGGTGTGCG
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCG
* *
20046484 CACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
66 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
20046549 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAA
131 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
20046614 GTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT
196 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
20046679 GAATTTTTTTATGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTT-TGGCCAAAACTC
261 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
20046743 CTTCTGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATA-TAAA
326 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* *
20046807 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCA
391 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
20046872 TAAAAATGGCATTGGAACGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATC
456 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * ** * *
20046937 CATGGCTTGCGCATCCCATCTTTCTGATCGGCGTAGTTCCTGCCTGCCCGACCGCCCGCTCGTTC
521 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA------G--TGCCCGCCCGCCCGCCCGTTC
* * *
20047002 ATTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
578 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
* * * * * * * * *
20047067 TGCGGTAGCAGCATCGACAGCACGTAGAGGGGGA-TCGGCCGATCCCTGGCTTGCACA-CCCTAC
643 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-GC
* * * * * * *
20047130 CTCTCTGGCTGGCTAAGCACCCGTACGCTTATTTCGTGGGTT-AGCTTAGGCATACAGAGTTCAT
707 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGA-CTTAGGCATACGGAGTTCAT
** *
20047194 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAG
771 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* * * *
20047259 CACATGCTGGGCACGGGCATGTGCTGGTGCCACATTTTTCTTCG-CTGGGGCACCATTGCCGGAG
836 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAG
* * * * * *
20047323 CATCACCGGAGAACCTGACCGACGGCAATGGGGTTCCAATGATCGGGGGGGCTGGGGGGTGTGTG
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCG
* * * *
20047388 CACATGATGTGCGAAGGGTGCTGGTACTTAGCCCTTTTATTGGCCCCCTATCCCTCTTCAAACCT
66 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
20047453 GGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC-GT-GCCATTAAA
131 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
20047516 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGTT
196 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
20047581 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-GAAGAAAT
261 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA-AACT
* * *
20047645 CCTTCTGAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAA
325 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* *
20047710 ATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
20047775 AT-AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
455 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *** * * * *
20047839 CCATGGCTTGCGTATCCCGTCTCTCTGGCAAACGTAATGCCCACCCGCTCGCCCGCTT-GATTCG
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-TTCGTTTCG
** * * * *
20047903 TCTATTGGCTCAGGCATACGGAGTTCATTCCCCA-TCTAAGACCAAACTAGACTGAGGGTTGCGG
584 TCGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGG
* * * *
20047967 TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGTGCATCCCGCCCCTTT
648 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
20048032 GGCCGACTGAGCGCCCGCAAGCTCATTTTGTGGGTTGACTTGGGCATACGTAGTTCATTCCCATT
713 GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * **
20048097 CTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCAGAACGAGGGTTGTAGCAGCACATGC
778 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC
* *
20048162 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAG
843 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * **
20048219 CATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTATG
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCG
20048284 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
66 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
** * *
20048349 TAAGAACTCACACCCCCTTAAAGAGCAGTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAA
131 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
20048414 ATGTCTCG-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTTGAGTTTTTAGC
196 GTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
20048478 TAAATTTTTTTGTGCATGCCAA-AAAAAAATAAGGATCACATCTACCAAGTTTGGGGTCAAAACT
260 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** * ** * *
20048542 CCCTCTAAAAAAATTTTAAAAAATCTCGAACC-TGAAAAAGTTTTGAAAATCATTAAAAATAGAA
325 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * *
20048606 AACGAGTCATCTTGCCATGAAAGTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * *
20048671 CATAAAAATTGCATTGGCATGCATAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGA
454 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
20048736 TCCACGGCTTGCGCATCCCATCTTTCTGGTCGGCATAGTGCCCGCCCGCCCGCCCGCTCGCTCAT
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-T---TCGT
* * ** * *
20048801 TTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCGGTCTAAGATCAGACTGGATTGAGGGTTA
580 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
** * * * * * *
20048866 CAACAGCAGGATCGGTAGCACACAGAGGGGGACGC-AGCCGATCCCCGGCTTGCACATCTCACCC
645 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCC
* * * * * * * *
20048930 CTCTAGCCGACTGAGCACCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC
709 CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* ** * *
20048995 CATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAATTGGAACGAGGGTTGCAGCAGCA
774 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCA
* * * *
20049059 TATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTC-T--TC---AC-CCATCGTCGGAG
838 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * *
20049114 CATCACCAGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGTGGTGTG
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGGTGTG
* * *
20049179 CGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAAG
64 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
20049244 CTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTG-TAGTAGCCATTA
129 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * * * *
20049308 ACGTGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTATACAGTTCAAGTTTTTTG
194 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
20049373 TTGAATTTTTTTGTGCATACCAAGAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
259 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * ** * *
20049438 TCCTTCCGAAAAAATTTAAAAAAATCCCAAATCGTAAAAAGTTTTGAAAGTCGTCAAAAATAGAA
324 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
20049503 AACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
20049568 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
454 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
20049633 TCGAGGGCTTGCGCATCTCGTCTCTCTGGACGACGTAGTGCCCACCCGCTCGCCTGCCCGTTCGT
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGTTCGT
* * ** * *
20049698 TTCGTCGGTTGGCTTAGGCATACAGAGTTCAGTCCCAGTCTAAGATTGGACCAGACTGAGGGCTA
580 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
** * * * *
20049763 CGGGCAATAGGATC-GCAGCACACAGAGGGGGACCCGGCCGAT-CCCGGCTTGCACATCCCACCC
645 C-GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* ** * *
20049826 CTCTGGCAGTATGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
709 CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
20049891 CAGACTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAC
774 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAC
* * * **
20049956 ATACTGGGCTCGGGCATGTGCTGGAGCCGCATTTTTCTTTGTCGGGGCACTGTCGTCGGAG
839 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * * *
20050017 CATCACCGAAAAACCTGACCGACAGCATTAGGGTTCCGATGATCGGGGGGGCGGGGGGGTTGTGC
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG-TGTGC
* * * *
20050082 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCTCTATCCCTCATCAAAAC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
20050147 TCAAGAACTCACATCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
20050212 AGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
20050277 TGAATTTTTTTGTGCTTGCCAACAAAAATACAAGTATCATGTCTACCAAGTTT-GGGCCTAAAAC
260 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAAC
* * ** **
20050341 TCCTTCCAAAAAAAGTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAA
324 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * * * *
20050406 AACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAACGGAACATTGTTTGAATTTACGAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
20050471 CATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
454 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
20050536 TCCACAGCTTGCTCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCATTTCG
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCG
* * * * ** * *
20050601 TCTGTTGGCTCT-GGCATATGGAGTTCATTCCCCGTCTAAGA-CCGTACCAGACCAAGGGCTACG
584 TCGGTTGGCT-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCG
* * * ** * * *
20050664 GCAGCAGGATCGACAGTACGCAGAGTGGGACCCGGTCGATCCCTGGCTTGTGCATCCCGCCCTTC
647 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * ** * * * *
20050729 TGGCCGACTGAGCACCCGCACGCTTGTTTCGTGGGTTAACTTGGGCATACGGTGTTCATTCCCAT
712 TGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * ** *
20050794 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACAAAGGGTGGCGGCAGCACATG
777 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATG
** * ** *
20050859 CTGGGCTCGATCATGTGCTGGTGCCACATTTTT-TTCACCGAGGCACCATCGTCGGAG
842 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
** * * * * * * * *
20050916 CATCGTCAGAGAATCTGACTGACGGCATTGGGGTTCCGGCAACCGGGGGGGCCAAGGGGGTTGTG
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGGTGTG
* *
20050981 CGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAAC
64 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
20051046 CTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
129 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
20051111 AAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAG
194 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
20051176 CTGAACTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAAC
259 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * **
20051241 TCCTTTCGAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAA
324 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
20051306 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAAC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
20051371 CATAAACATGTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGA
454 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * ** *
20051435 TCCACGGCTTGCGCATCCTGTCTCTCTAGTCGAAGTAGTGCCTGCCCGCCCG--C--TCGTTTCG
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCG
* *
20051496 ACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACTGAGGGTTGCAG
584 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTGAGGGTTGCGG
* * * * * *
20051561 TAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCACGCCCCTCT
648 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
** * * **
20051626 GGCCGGCTGAGCGCCCGCACGCTCATTTCGTTTGTTGACTTAGGCATACAGAGCTCATTCGTAGT
713 GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* ** * *
20051691 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGGGTTACGGCAGCACATAC
778 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC
* *
20051756 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGG---CA----C----
843 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* *
20051802 CATCACCGGAGAACCTGACCGACGGCATTGGGGATCCGACGATGGCGGGGGCC-GGGGGGTGTGC
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGC
** * *
20051866 GCACATGATGTAAGATGGGTGCTGGTACTTGGCCCTTAGATT-GCTCCCTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
20051930 TTGAGAACTCACACCACCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
20051995 AGCGTTTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
20052059 TGACTTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATT
260 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
20052124 CCTTCCGAAAAAATTTTAAAAAATCCCGAACAC--AAAATGTTTCAAAAATCCTGAAAAATAGAA
325 CCTTCCGAAAAAATTTTAAAAAATCCCGAAC-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
** ** *
20052187 AATAAGTCGTCTTGCCGGGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** *
20052252 CATAAAAATATCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
454 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
20052317 TCCACGGCTTGCGCAACCCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCACCCGCTCGTTCCG
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCG
* * *
20052382 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGTGG
584 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGG
* **
20052446 CAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCATCGGCTTGCGCATCCCGCCCCTCT
648 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
20052511 GGCCGGCTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
713 GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
20052576 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGGCCAGATCGAGGGTTGCGGTAGCACATGC
778 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * **
20052641 TGGACTCAGGCATGTGCTGGGGCCGCAATTTTCTTCACCGGGGCACCATCGTCGGAG
843 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* ** * *
20052698 CATAACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGTGGCTGGTGGGGGGGTG
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGG-GGGGGTGTG
20052763 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
64 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * * *
20052828 CTCGAGAACTCATAGCCCCTGAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTA
129 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
20052893 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCAAGTTTTTAG
194 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
20052958 GTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATAATGGCTACCAAGTTTGGGGCCAAAAC
259 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * *
20053023 TTCGTCCGAAAAAATTTTAACAAATCTCGAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGAA
324 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * *
20053088 AACGAGTCGTCTTGCTAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * *
20053153 CATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGTCTAAACCCACCTATCAACCTATCGA
454 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
20053218 TCCACGGCTTGTGCATCCCGTCTCTCTTGCCGGCATAGTGCCCGCCCGCCCACCCGTTCGTTTCG
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCG
** ** * * *
20053283 TCGGTTGGCTTAGAAATACGGAGTTCATTCATAGTCTAAGATCAGACCAGACTGAAGGTTGCAGT
584 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGC
* * * * ** *
20053348 AGTAGGATCAGCAGCACGCAAAGGGGGACTCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTG
649 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * ** * * * *
20053413 GTCGGCTAAGTGCTTGCATGCTCATTTTGCGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
714 GCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* **
20053478 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGGCAGCACATGCT
779 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * *
20053543 GGGCTCGGGCATGTGCTAGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAG
844 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* ** ** * *
20053599 CATCACCAGAGAACCTGATAGGTGGCATTAGGGTTCCGGCGATCGGGGGGCCCGGGGGGGTGTGC
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGC
* *
20053664 GCACATGATGTGCGATGGGTGCTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
20053729 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
20053794 AGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * * *
20053859 TTAATTTTTTTGTGTATGCCAACAAAAAATACAATGAGCAAGTCTACGAAGTTTGGGGCCAAAAC
260 TGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
20053924 TCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
324 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
20053989 AACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
20054054 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
454 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
20054119 TCCACGGCTTGTGCAGCCCGTCTCTTTGGCCGCCGTAGTGCCCGCCCGCCCGCCTGCCTGCTCGT
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-C--CC-GTTCGT
* * * * *
20054184 TTCGTCGGTTGGCTTAGGCATACAGAGTTCATTACCAGTCTATGATCAGATCGGACTGAGGGTTG
580 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* * * * * * ** **
20054249 TGGTAGCAAGATCGGCAGCACGTAGATGGGGACCCGATCGATCCTTGGCTTGCGCATCCTACCCC
645 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * **
20054314 TCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCAT
710 TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * ** * *
20054379 AGTCTAAACATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCACA
775 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACA
* * ** **
20054444 TGCTAGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCACCGGGG---CA----C----
840 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
*
20054493 CATCACC--AGAACCTGACCGACGGCATTGGGGTTCC-AGCGATCGAGGGGGCCGGGGAGGTGTG
1 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCG-GGGGGCCGGGGGGGTGTG
20054555 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAAC
64 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
20054619 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTA
129 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
20054684 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
194 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
20054749 CTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAAC
259 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * ** *
20054814 TCCATCCGAAAAAATTTTAAAAAACTCTCGAACCGCT-AAAAGTTTTGAAAATCATGAAAAATAG
324 TCCTTCCGAAAAAATTTTAAAAAA-TCCCGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAG
*
20054878 AAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
387 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
20054943 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTAAC
452 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
** * * *
20055008 GATCCATAGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCTCCCGTCCGCCC
517 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
20055065 TCTTGTGGCC
Statistics
Matches: 12275, Mismatches: 1550, Indels: 387
0.86 0.11 0.03
Matches are distributed among these distances:
881 183 0.01
882 590 0.05
883 100 0.01
884 51 0.00
885 492 0.04
886 100 0.01
888 7 0.00
889 1 0.00
890 68 0.01
891 403 0.03
892 543 0.04
893 502 0.04
894 1460 0.12
895 405 0.03
896 1133 0.09
897 626 0.05
898 419 0.03
899 602 0.05
900 972 0.08
901 982 0.08
902 584 0.05
903 788 0.06
904 524 0.04
905 275 0.02
906 446 0.04
907 19 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAG
CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
Found at i:20053484 original size:26 final size:26
Alignment explanation
Indices: 20053455--20053507 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20053445 GTTGACTTAG
*
20053455 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20053481 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20053507 G
1 G
20053508 ATCGGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20054395 original size:26 final size:26
Alignment explanation
Indices: 20054361--20054411 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20054351 TTGACTTAGG
*
20054361 CATACGGAGTTCATTCATAGTCTAAA
1 CATACGGAGTTCATTCACAGTCTAAA
* *
20054387 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCACAGTCTAA
20054412 GATTGGATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCACAGTCTAAA
Found at i:20055150 original size:26 final size:24
Alignment explanation
Indices: 20055121--20055170 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 24
20055111 GCATACGTAG
20055121 TTCATTCCCAGTCTAAGCATATGGAC
1 TTCATTCCCAGTCTAAG-AT-TGGAC
20055147 TTCATTCCCAGTCTAAGATTGGAC
1 TTCATTCCCAGTCTAAGATTGGAC
20055171 CGGACCGCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 5 0.21
25 2 0.08
26 17 0.71
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (24 bp):
TTCATTCCCAGTCTAAGATTGGAC
Found at i:20055773 original size:760 final size:750
Alignment explanation
Indices: 20054323--20055820 Score: 2215
Period size: 760 Copynumber: 2.0 Consensus size: 750
20054313 CTCTGGCCGA
*
20054323 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAAAC
1 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAAC
* * *
20054388 ATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGGCT
66 ATATGGACTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCT
20054453 CGAGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCACCAGAACCTGACCGACGGCA
131 CGAGCATGTGCTGGTG-CATATTTTTCTTCACCGGGGCACCATCACCAGAACCTGACCGACGGCA
*
20054518 TTGGGGTTCCAGCGATCGAGGGGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
195 TTGGGGTTCCAGCGATCGAGGGGGCCAGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
20054583 CTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
260 CTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAAAGCA
* * *
20054648 TTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
325 TTTGAGATGTTACAGGTTTACTGCCAGTAGACATTAAAGTGTCTGAAATGGGGACACTCTTTTCA
* *
20054713 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAA
390 AATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACAAAAA
* *
20054778 TACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCATCCGAAAAAATTTTAAAAAACTCTC
455 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAAGTTTAAAAAACTCTC
** * *
20054843 GAACCGCTAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCAC
520 GAACCGCTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
* * *
20054908 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAT
585 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCACGCAAAAAT
* * *
20054973 ATGAAGATGTGCCTAAACCCACCTGCCACCCTAACGATCCATAGCTTGCGCATCCCGTCTCTCTG
650 ATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACAGCTTACGCATCCCGTCTCTCTG
** * *
20055038 GCTGGCGTAGTGCCCTCCCGTCCGCCCTCTTGTGGC
715 GCCAGCGTAGTGACCGCCCGTCCGCCCTCTTGTGGC
* * * *
20055074 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAAC
* * * *
20055139 ATATGGACTTCATTCCCAGTCTAAGATTGGACCGGACCGCGGTTTGCGACAGCACATGCTGGGCT
66 ATATGGACTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCT
** *
20055204 CGAGCATGTGCTGGTG-ATGCATTTTTCTTTGCCAGGGCACCATCGTCGGAGCATCACCGGAGAA
131 CGAGCATGTGCTGGTGCAT--ATTTTTCTTCACC-GGG-------G-C--ACCATCACC--AGAA
* *
20055268 CCTGACCGACGGCATTGGGGTTTC-GACGGTCG-GGGGGCCAGGG-GGTGTGCGCACATGATGTG
181 CCTGACCGACGGCATTGGGGTTCCAG-CGATCGAGGGGGCCAGGGAGGTGTGCGCACATGATGTG
** *
20055330 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATTTTGAGAACTCAC
245 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
20055395 ACCCACTTAAAAAGCGTTTGAGATTTTACAGGTTTACTGCCAGTAGACATTAAAGTGTCTGAAAT
309 ACCCACTTAAAAAGCATTTGAGATGTTACAGGTTTACTGCCAGTAGACATTAAAGTGTCTGAAAT
*
20055460 GGGGACACTCTTTTCAAATAGTCATAAAATCTTGTACACTTC-ATGTTTTTAGCTGAA-TTTTTT
374 GGGGACACTCTTTTCAAATAGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTT
* * * *
20055523 ATGCATGCCAACAAAAGTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC-CCTTCC-AAGA
438 ATGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAA-A
*
20055586 AAAGTTTAAAAAA-TCTCGATCCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
502 AAAGTTTAAAAAACTCTCGAACCGCT-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
**
20055649 TCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTGTAAGCCATAAAAAT
566 TCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
20055714 CGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
631 CGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACAGCT
*
20055779 TACGCATCTCGTCTCTCTGGCCAGCGTAGTGACCGCCCGTCC
696 TACGCATCCCGTCTCTCTGGCCAGCGTAGTGACCGCCCGTCC
20055821 TTTCGTTTCG
Statistics
Matches: 669, Mismatches: 58, Indels: 31
0.88 0.08 0.04
Matches are distributed among these distances:
749 2 0.00
751 145 0.22
752 3 0.00
759 2 0.00
760 202 0.30
761 18 0.03
762 114 0.17
763 151 0.23
764 32 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (750 bp):
CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAAC
ATATGGACTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCT
CGAGCATGTGCTGGTGCATATTTTTCTTCACCGGGGCACCATCACCAGAACCTGACCGACGGCAT
TGGGGTTCCAGCGATCGAGGGGGCCAGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAAAGCAT
TTGAGATGTTACAGGTTTACTGCCAGTAGACATTAAAGTGTCTGAAATGGGGACACTCTTTTCAA
ATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAAGTTTAAAAAACTCTCG
AACCGCTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
TGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCACGCAAAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACAGCTTACGCATCCCGTCTCTCTGG
CCAGCGTAGTGACCGCCCGTCCGCCCTCTTGTGGC
Found at i:20056038 original size:26 final size:27
Alignment explanation
Indices: 20056001--20056051 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
20055991 GTTCACTTAG
20056001 GCATACGAAGTTCATTCCC-AGTCTGA
1 GCATACGAAGTTCATTCCCTAGTCTGA
*
20056027 GCATACGGAGTTCATTCCCTAGTCT
1 GCATACGAAGTTCATTCCCTAGTCT
20056052 AAGGTCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (27 bp):
GCATACGAAGTTCATTCCCTAGTCTGA
Found at i:20057662 original size:26 final size:26
Alignment explanation
Indices: 20057633--20057685 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20057623 GTTGACTTAG
20057633 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
20057659 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
20057685 G
1 G
20057686 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:20058548 original size:26 final size:26
Alignment explanation
Indices: 20058519--20058571 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20058509 GTTGACTTAG
20058519 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
20058545 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
20058571 G
1 G
20058572 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:20058768 original size:886 final size:891
Alignment explanation
Indices: 20056712--20061526 Score: 6461
Period size: 886 Copynumber: 5.4 Consensus size: 891
20056702 TGCCCGTCCT
* * * * *
20056712 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTAATTCCCAGTCTAAGCATAC
1 CCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATAC
* * * * * * *
20056777 GGAGATCATTCCCAATCTAA-ATCAGACCGAACCGAGGGTTACGACAGCACATGCTGGGTTCGGG
66 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAG
** *
20056841 CATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGA
131 CATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCAT-ACCGGAGCATCACCGGAGAACCTGA
*
20056906 CCGGCGGCATTGGGGTT-CGG-C-GGCC-GGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGG
195 CCGGCGGCATTGGGGTTCCGGTCGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
20056967 TACTTGGCCCTTATATT-GGCCCTCTATCCCTCATGAAACCTCGAGAACTCACACCCCCTTAAAG
260 TACTTAGCCCTTATATTGGGCCC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
20057031 AGCATTCGAGATTTTACAGGTTTGCTGCCAGTAG-CATTTAAAGTGTCTGAAATGGGGACACTTT
324 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACTTT
* * * *
20057095 TTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGATTTTTTTTGTGCATGCCAAC
388 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC
* ** *
20057160 AAAAATAAAAGGATCACACCTACCAAGTTTGGGGCCAAAACACCTTCC-AAAAAAGTTTTAAAAA
453 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAA
* * *
20057224 ATCCC-GACTTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAA
517 ATCCCAAAC-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
20057288 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCTTGGCATGC
581 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
20057353 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
646 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
20057418 ACTCTGGTCAGCGTAGTGCCCGCCCGCCCGCACGCTCATTTCGTCGGTTGGCTTAGGCATACAGA
711 TCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCACGCTCATTTCGTCGGTTGGCTTAGGCATACAGA
* * *
20057483 GTTAATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGGGGTAGTAGGATCGACAGCTCGTAAA
776 GTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGGGGCAGTAGGATCGACAGCTCGTAGA
*
20057548 GGGGGACCCGATCGATCCTCGGCTTGCGCATTCTGCCCCTCTGGCCAGCTTA
841 GGGGGACCCGATCGATCCT-GGCTTGCGCATTCTGCCCCTCTGGCCAGCTGA
* * * *
20057600 CCACCCGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATAC
1 CCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATAC
* * *
20057665 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTCCGACAGCACATGCTGGGCTCGAG
66 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAG
* * *
20057730 CATGAGCTGGTGCCACATTTTTCTTTGCCGAGGCACTATCACCGGAGCATCACCGGAGAACCTGA
131 CATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCAT-ACCGGAGCATCACCGGAGAACCTGA
* *
20057795 CCGGCGGCATTGGGGTT-CGG-C-GGCCGGGGGGGTGTGCGCACATGATATGCGGTGGGTGCTGG
195 CCGGCGGCATTGGGGTTCCGGTCGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
20057857 TACTTAGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGA
260 TACTTAGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
20057921 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGAACACTTTTT
325 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
20057986 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAA
390 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAA
*
20058051 AAATACTAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
455 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** * *
20058116 CCAAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
520 CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
20058181 ACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGC-TTGGCATGCAGAA
585 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
*
20058244 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTC
650 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
20058309 TGGTCAGCGTAGTGCCCGCCCGCCCGCACGCTCATTTCGTCCGTTGGCTTAGGCATACAGAGTTA
715 TGGCCAGCGTAGTGCCCGCCCGCCCGCACGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTC
* *
20058374 ATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGGGGTAGTAGGATCGACAGCTCGTAAAGGGG
780 ATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGGGGCAGTAGGATCGACAGCTCGTAGAGGGG
* *
20058439 GACCCGATCGATCCTGGCTTCCGCATTCTGCCCCTCTGGCCAGCTTA
845 GACCCGATCGATCCTGGCTTGCGCATTCTGCCCCTCTGGCCAGCTGA
* * * *
20058486 CCACCCGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATAC
1 CCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATAC
* * *
20058551 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTCCGACAGCACATGCTGGGCTCGAG
66 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAG
* * *
20058616 CATGAGCTGGTGCCACATTTTTCTTTGCCGAGGCACTATACCGGAGCATCACCGGAGAACCTGAC
131 CATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATACCGGAGCATCACCGGAGAACCTGAC
* *
20058681 CGGCGGCATTGGGGTT-CGG-C-GGCCGGGGGGGTGTGCGCACATGAATATGCGGTGGGTGCTGG
196 CGGCGGCATTGGGGTTCCGGTCGGGCCGGGGGGGTGTGCGCACATG-ATGTGCGATGGGTGCTGG
20058743 TACTTAGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGA
260 TACTTAGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
20058807 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGAACACTTTTT
325 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
20058872 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAA
390 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAA
*
20058937 AAATACTAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
455 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** * *
20059002 CCAAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTC
520 CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * *
20059067 ACGTGAAGGCTTAAGAGACCACTGTATGAATTTACAAGCCATGAAAATGGCATTGGCACGCAGAA
585 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * *
20059132 ATATGAAGATCTACCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCTGTCTCTC
650 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
20059197 TGGCCGGCGCAGTGCCCGCCCGCCCGCACGCTCACTCGTTTCGTCGATTGGCTTAGGCATATAGA
715 TGGCCAGCGTAGTGCCCGCCCGCCCGCACGCTCA----TTTCGTCGGTTGGCTTAGGCATACAGA
** * * * *
20059262 GTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGG-TGGTGGCAGTAGGATCGACAGCACGCAG
776 GTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGG-GGCAGTAGGATCGACAGCTCGTAG
* * ** * * **
20059326 AGGGGGACCCGGTCGATCCCCGGCTTGCATATCCCGCCCCTCTGGCTGGCTGA
840 AGGGGGACCCGATCGAT-CCTGGCTTGCGCATTCTGCCCCTCTGGCCAGCTGA
* * * * *
20059379 ACGCCCGCACGCTCATTTCATGGGTTGACTCAGGCATACGGAGTTCATTCCCTGTCTAAGCATAC
1 CCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATAC
* * * * *
20059444 GGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTCGGCTC-A
66 GGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGA
*
20059507 GGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCAT--C---G--T---CGGAGAACCTG
130 -GCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATACCGGAGCATCACCGGAGAACCTG
**
20059562 ACCGATGGCATTGGGGTTCCGGCTATCGGGGGAGCC-GGGGGGTGTGCGCACATGATGTGCGATG
194 ACCGGCGGCATTGGGGTTCCGG---TC---GG-GCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
20059626 GGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAGCTTACACCCC
252 GGTGCTGGTACTTAGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
20059691 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAATAAAGTGTCTGGAATGGGGA
317 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
20059756 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTGAGCTGAATT-TTTTATGCAC
382 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
* * *
20059820 GCCAACAAAAATACAAGGACCACGTCTACCAAGTTTGGGGCCGAAACACCTTCCGAAAAAATTTT
447 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
20059885 AAAAAATCCCAAACCGTAAAAACTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATGTTGCCAT
512 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
20059950 GAAACTTCATGTGAAGGCTTAAGGGACCATTATATGAATTTACCAGCCATAAAAATGGCATTAGC
577 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
20060015 ATGCAGAAATATGAAGAAGTGCCTAAACCCGCCTAGCACTCTATCGATCCGCGGCTTGCGCATCC
642 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
20060080 CGTCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATA
707 CGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCACGCTCATTTCGTCGGTTGGCTTAGGCATA
* * * *
20060145 CGGAGTTCATTCCCAGTCTAAGAT-AGGACCAGACCGAGGGTTGCGGCAGCAGGATC-AGCAG-T
772 CAGAGTTCATTCCCAGTCTAAGATCA-GATCAGACCGAGGGTTGGGGCAGTAGGATCGA-CAGCT
* *
20060207 ACGTAGA-GGGGACCC-AGCCGATCCCCGGCTTGCGCA-TCTCGCCCC-CTGGCC-GACTGA
835 -CGTAGAGGGGGACCCGA-TCGAT-CCTGGCTTGCGCATTCT-GCCCCTCTGGCCAG-CTGA
* * *
20060264 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATAC
1 CCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATAC
* * * * * * *
20060329 GGATTTCATTCCCAGTCTATGATCAGACCGGACTGAGGGTGGTGGCCGCACATGCTGGGCTCGGG
66 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAG
* * ** **
20060394 CATGTGCTGATACTGCATTTTTC-TT----------C--ACCGGAGCATCGTCGGAGAACCTGAC
131 CATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATACCGGAGCATCACCGGAGAACCTGAC
** * * *
20060446 CGATGGCATTGAGGTTCCGACGATCAAGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGT
196 CGGCGGCATTGGGGTTCCG--G-TC---GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *** * * *
20060511 GCTGGTACTTGGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTCAAGAACTTAAACCCCCTT
255 GCTGGTACTTAGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
20060576 AAAGAGCGTTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
320 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
20060641 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACC
385 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCC
* * *
20060706 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
450 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
*
20060771 AAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
515 AAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
20060836 ACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATG
580 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
20060901 AAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
645 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * ** *
20060966 CTCTCTGGCC-GACGTAGTGCCCGCCTGCCCTCCAACCCACTTGTTTCATCGGTTGGCTTAGGCA
710 CTCTCTGGCCAG-CGTAGTGCCCGCCCGCCC-GC-A--CGCTCATTTCGTCGGTTGGCTTAGGCA
* * ** * * * ** * * *
20061030 TACGGGGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTACGGCAGCAGGATCGATAGCA
770 TACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGGGGCAGTAGGATCGACAGCT
* * * * *
20061095 CGCAGAGGGGGACCCGACCGATCTTCGGCTTGCGCATCCTGCCCCCTCTGGCCGGCTGA
835 CGTAGAGGGGGACCCGATCGATCCT-GGCTTGCGCATTCTG-CCCCTCTGGCCAGCTGA
* * * * *
20061154 GCGCCCGCACACTTGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
1 CCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATAC
* * * *
20061219 GGAGTTGATTCCCAGTCTAAGATCAGATCGGA-TCGAGGGTTGCGCCAGCACATGCTGGGGTCGA
66 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGACAGCACATGCTGGGCTCGA
** * * *
20061283 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT--C---GC--CA---GAGAACTTGA
130 GCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATACCGGAGCATCACCGGAGAACCTGA
* * * *
20061338 TCGGCGGCATTGGGGTTCCGCGCGATCGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGC
195 CCGGCGGCATTGGGGTT-C-CG-G-TC---GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
20061403 GTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCC
253 GTGCTGGTACTTAGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
20061468 TTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAAT
318 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
20061527 ACAAGGATCA
Statistics
Matches: 3551, Mismatches: 294, Indels: 158
0.89 0.07 0.04
Matches are distributed among these distances:
874 2 0.00
877 1 0.00
879 1 0.00
881 2 0.00
882 238 0.07
883 298 0.08
884 8 0.00
885 210 0.06
886 588 0.17
887 411 0.12
888 244 0.07
889 383 0.11
890 232 0.07
891 352 0.10
892 229 0.06
893 195 0.05
894 150 0.04
895 2 0.00
896 1 0.00
898 2 0.00
901 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAG
CATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATACCGGAGCATCACCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGGTCGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTAGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCAGCGTAGTGCCCGCCCGCCCGCACGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCA
TTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGGGGCAGTAGGATCGACAGCTCGTAGAGGGGG
ACCCGATCGATCCTGGCTTGCGCATTCTGCCCCTCTGGCCAGCTGA
Found at i:20059442 original size:26 final size:26
Alignment explanation
Indices: 20059412--20059464 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20059402 GTTGACTCAG
*
20059412 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20059438 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20059464 G
1 G
20059465 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20061217 original size:26 final size:26
Alignment explanation
Indices: 20061187--20061239 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20061177 GTTAACTTAG
20061187 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20061213 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20061239 G
1 G
20061240 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20062017 original size:26 final size:26
Alignment explanation
Indices: 20061981--20062033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20061971 GTTGACTTAG
*
20061981 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20062007 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20062033 G
1 G
20062034 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20062905 original size:26 final size:26
Alignment explanation
Indices: 20062874--20062926 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20062864 GTTGACTTAG
20062874 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
20062900 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20062926 G
1 G
20062927 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:20065459 original size:26 final size:26
Alignment explanation
Indices: 20065422--20065474 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20065412 GTTGACTTAG
*
20065422 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACTAAGTTCATTCCCAGTCTAA
20065448 GCATACTAAGTTCATTCCCAGTCTAA
1 GCATACTAAGTTCATTCCCAGTCTAA
20065474 G
1 G
20065475 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACTAAGTTCATTCCCAGTCTAA
Found at i:20066360 original size:26 final size:26
Alignment explanation
Indices: 20066324--20066376 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20066314 GTTGACTTAG
20066324 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
20066350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20066376 G
1 G
20066377 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20066578 original size:902 final size:894
Alignment explanation
Indices: 20064563--20067846 Score: 4214
Period size: 902 Copynumber: 3.7 Consensus size: 894
20064553 AGGCATATGG
* * * *
20064563 AGTTCATTCCCAGTCTAAGATCGGACCGTACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCA
* * *
20064628 TGTGCTGGTGCCCCATTTTTCTTCACC-GGGCAACCATCG-CTGGAGCATCACCAGAGAACCTGA
66 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGC-ACCATCGTC-GGAGCATCGCCAGAGAACCTGA
* * * * * * * *
20064691 CCGACAGCATTGGGCTTCTGGTGATC-AGGGGGCTGGGGGGTGTGCACACATGATGTGTGATGGG
129 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCAGGGGGGTGTGCACACATGATGTGCGATGGG
* *
20064755 TGCTAGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
20064820 TAAAGAGGATTTGAGATGTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGTGGG-C
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGGAC
* * * *
20064884 ACTTCTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
20064949 CCAACAAAAATACAAGGATCACGTGTACCAAG-TTCGGCCCAAAATTCCTT-CGAACAAATTTTA
388 CCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTCCGAA-AAATTTTA
* *
20065012 AAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
451 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
20065077 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGAATTGGCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCA
*
20065142 AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
581 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
20065207 GTCTCTTTGGCAG-GT-GCTACGC-CCCGCCCGTCCG-CTCGTTTCGTCGGTTGCCTTAGGCATA
646 GTCTCTCTGGCAGCGTAG-TGCCCGCCCGCCCGCCCGCCTCGTTTCTTCGGTTGGCTTAGGCATA
* *
20065268 CGGAGTTCT-TTCCCAGTCTAAGATCAAATCA-GACCGACGGTTGCGGTAGCAGGATCGGCAGCA
710 CGGAGTT-TATT-CCAGTCTAAGATC-AA-CAGGACCAAGGGTTGCGGTAGCAGGATCGGCAGCA
* * * * *
20065331 CGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT-AGCTGGCTGAGCGCCC
771 CGCAGA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGA-CAGGCTAAGCGCCC
* *
20065395 GTACGCTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACTA
834 GTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGA
* * * *
20065456 AGTTCATTCCCAGTCTAAGATCAGACCGGACC-ACGGTTGTGATAGCGCATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCA
* * * * *
20065520 TGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGCCGGAAAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACC
* * * * * *
20065585 GGCGGCATTGGGGTTCCGGCGATTGGAGGGGCTGGGGGGGGTTTGCGCACATGATGTGCGGTGGG
131 GGCGGCATTGGGGTTCCGGCGATCGGGGGGGC--AGGGGGGTGTGCACACATGATGTGCGATGGG
*
20065650 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
20065715 TAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* **
20065780 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTG-ATGTTTTTCATGCATG
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT-TTTTTTGTGCATG
*
20065844 CCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAATTTTAA
388 CCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTCCGAAAAATTTTAA
* * * * *
20065909 AAAATCCCGAACCACAAAAAGGTTT-AAAAATCATGAAAAATATAAAAGGAGTCGTCGTGCCATG
452 AAAATCCCAAACCGCAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
20065973 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCA
* *
20066038 TGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCC
581 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
20066103 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCATTCGTTTCTTCGCTTGGCTTAGGC
646 GTCTCTCTGG-CAGCGTAGTGCCCGCCCGCCCGCCCG-CC--TCGTTTCTTCGGTTGGCTTAGGC
* * * *
20066168 ATACGGAGTTTATTCCAGTCTAAGACCGAACAGGACCAAGGGTTGTGGCAGTAGGATCGGCAGCA
707 ATACGGAGTTTATTCCAGTCTAAGATC-AACAGGACCAAGGGTTGCGGTAGCAGGATCGGCAGCA
* * * * *
20066233 CGCAGAGGGGCACCCAGCCGATCCCCGGCCTGTGCATCCCGCCCCTCTGACCGGCTAAGCGCCTG
771 CGCAGAGGGG-ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGACAGGCTAAGCGCCCG
* *
20066298 TACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGG
835 TACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGA
* * *
20066358 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCA
* * ** * * *
20066423 TGGGCTGGTGCCGCATTTTTCTTCCCCAAGGCACCATCGTCGGACCATCGCCGGAGAACCTAACC
66 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACC
** *
20066488 GGCGGCATTGGGGTTCCGATGATCGGGGGGGCAGTGGGGGTGTGCACACATGATGTGCAATGGGT
131 GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCAG-GGGGGTGTGCACACATGATGTGCGATGGGT
* * * **
20066553 GCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTAAGGCCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
20066618 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
20066683 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTGTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * **
20066748 AAGAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTAATTCTAAAAAAATTTTAAA
390 AACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTC-CGAAAAATTTT-AA
* * *
20066813 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTTAAAAATAGAAAATGAGTCGTCTTGCCATGA
452 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
20066878 AACTTCACGTGAAGGCTTAA-GG------G-ATG------C-AG------AAATGGCATTGGCAT
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCAT
*
20066922 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
20066987 TCTCTCTAGTCAGCGTAGTGCCTACCCGGCCGCCCGCCCGTCCGCTCGTTTCATT-GGTTGGCTT
647 TCTCTCT-GGCAGCGTAGTG----CCCGCCCGCCCGCCCG--C-CTCGTTTC-TTCGGTTGGCTT
* * * * ** * *
20067051 AGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGAACCTAGGGTTGCGGTAGCAAAACCGA
703 AGGCATACGGAGTTTATTCC-AGTCTAAGATCA-ACAGGACCAAGGGTTGCGGTAGCAGGATCGG
* * * * *
20067116 TAACACGTAGAGGGAGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTAAGC
766 CAGCACGCAGAGGG-GACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGACAGGCTAAGC
* * *
20067181 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
830 GCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGA
* * * * * *
20067246 AGTTCATTCTCAGTCTAAGATC-GAATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGT
1 AGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
* * * *
20067310 ATGTGCTGGTGCCACATTTTTCTTCGGCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGAC
* * * * *
20067375 CGGCGGCATTAGGGTTCCGGCGATTGGGGGGGCCA-GGGGG-GTACGCACATGATATGCGATGGG
130 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-CAGGGGGGTGTGCACACATGATGTGCGATGGG
* *
20067438 TGTTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCA-CAAACCTCGAGAACTCTCACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
20067501 TGAAGAGCATTTCAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
20067566 C-TTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTCT-GCTAAATTTTTTTGTGCATG
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT-TAGCTGAATTTTTTTGTGCATG
** * * *
20067629 CCAACAAAAAT-ACTGTATTTCACGTCTACCAAATTTGGGGCCAAAACTCCTCCTGAAAAAATTT
388 CCAACAAAAATAAAAGGA--TCACGTCTACCAAGTTTGGGGCCAAAACTCTTCC-G-AAAAATTT
*** * * *
20067693 TAAAAAATCTGGAACCGTAAAAAGTTTCAAAAATCGA-GAAAAATAGGAAACGAGTCGTCTGGCC
449 TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGTCTTGCC
*
20067757 ATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
513 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
20067822 GCATGCAGAAATATGAAGATGTGCC
578 GCATGCAGAAATATGAAGATGTGCC
20067847 CACACGCTCG
Statistics
Matches: 2082, Mismatches: 239, Indels: 129
0.85 0.10 0.05
Matches are distributed among these distances:
882 2 0.00
883 238 0.11
884 122 0.06
885 13 0.01
886 42 0.02
887 56 0.03
888 285 0.14
889 6 0.00
890 2 0.00
891 3 0.00
892 95 0.05
893 39 0.02
894 5 0.00
895 230 0.11
896 211 0.10
897 12 0.01
898 7 0.00
899 12 0.01
901 8 0.00
902 425 0.20
903 159 0.08
904 110 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCA
TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACC
GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCAGGGGGGTGTGCACACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTCCGAAAAATTTTAAAAAA
TCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCAGCGTAGTGCCCGCCCGCCCGCCCGCCTCGTTTCTTCGGTTGGCTTAGGCATACGGAGT
TTATTCCAGTCTAAGATCAACAGGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGG
ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGACAGGCTAAGCGCCCGTACGCTCATTT
CGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGA
Found at i:20067249 original size:26 final size:26
Alignment explanation
Indices: 20067212--20067264 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20067202 GTTGACTTAG
*
20067212 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20067238 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20067264 G
1 G
20067265 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20068455 original size:641 final size:636
Alignment explanation
Indices: 20067238--20068484 Score: 1797
Period size: 641 Copynumber: 2.0 Consensus size: 636
20067228 CCCAGTCTAA
* * * *
20067238 GCATACGAAGTTCATTCTCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAAGATTGCGACAGCACATGCTGGG
* * *
20067303 CTCGGGTATGTGCTGGTGCCACATTTTTCTTCGGCGGGGCACCATCGCCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGGCAGGACACCATCGCCGGAGCATCGTCAGAGA
* * * * * *
20067368 ACCTGACCGGCGGCATTAGGGTTCCGGCGATTGGGGGGGCCAGGGGGGTACGCACATGATATGCG
131 ACCTAACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCAGGGGGGTACGCACAGGATATACG
** * *
20067433 ATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCACAAACCTCGAGAACTCTCACCC
196 ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCTATCCCTCACAAACCTCAAGAACTCACACCC
* * *
20067498 CCTTGAAGAGCATTTCAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGG
261 CCTTAAAGAGCATTTCACATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGG
*
20067563 ACACTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTCTGCTAAATTTTTTTGTGCAT
326 ACACTTTTTCAAACGGTCACAAAATCTTGTACACTCCGAGTTTTCTGCTAAATTTTTTTGTGCAT
* * *
20067628 GCCAACAAAAATACTGTATTTCACGTCTACCAAATTTGGGGCCAAAACTCCTCCTGAAAAAATTT
391 GCCAACAAAAATACAGGA-TTAACGTCTACCAAATTTGGGGCCAAAACTCCTCCTGAAAAAATTT
* * * *
20067693 TAAAAAATCTGGAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGGAAACGAGTCGTCTGGCCA
455 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCATCTGGCCA
20067758 TGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGG
520 TGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGG
20067823 CATGCAGAAATATGAAGATGTGCCCACACGCTCGTTTCGTGGGTTGACTTAG
585 CATGCAGAAATATGAAGATGTGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * *
20067875 GCATACGGAGTTCATTCCCAGTCTAAGATCTG-ATC-GAACTGAAGATTGCGATAGCACATGCTG
1 GCATACGAAGTTCATTCCCAGTCTAAGATC-GAATCAG-ACCGAAGATTGCGACAGCACATGCTG
* * ** * *
20067938 GGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTTAGGACACCATCGTCGGAGCATC-TCTGG
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGGCAGGACACCATCGCCGGAGCATCGTC-AG
* * **
20068002 AGAACCTAACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGAGGGGGTGTGTGCACAGGAT
128 AGAACCTAACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCC-AGGGGG-GTACGCACAGGAT
* *
20068067 GTACGGTGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
191 ATACGATGGGTGCCGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCA-CAAACCTCAAGAACT
*
20068132 CACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGA
254 CACACCCCCTTAAAGAGCATTTCACATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGA
* * * * *
20068197 AATGGGGACACTTTTTTCAAACGGTCAGAAAGTCTTGTATACTTCGAGTTTT-TAGCTGAATTTT
319 AATGGGGACAC-TTTTTCAAACGGTCACAAAATCTTGTACACTCCGAGTTTTCT-GCTAAATTTT
* * *
20068261 TTTGTGCATGCCAAGAAAAATACAAGGA-TAACGTCTACCAAGTTTGGGGCCAAAATTCCTTCC-
382 TTTGTGCATGCCAACAAAAATAC-AGGATTAACGTCTACCAAATTTGGGGCCAAAACTCC-TCCT
**
20068324 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATC-ATGAAAAATAGAAAACGAG
445 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGA-GAAAAATAGAAAACGAG
* * *
20068388 TCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
509 TCATCTGGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
20068453 AATGGCATTGGCATGGAGAAATATGAAGATGT
574 AATGGAATTGGCATGCAGAAATATGAAGATGT
20068485 ACCTAAACCC
Statistics
Matches: 539, Mismatches: 59, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
636 3 0.01
637 142 0.26
638 7 0.01
639 40 0.07
640 14 0.03
641 262 0.49
642 69 0.13
643 2 0.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (636 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAAGATTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGGCAGGACACCATCGCCGGAGCATCGTCAGAGA
ACCTAACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCAGGGGGGTACGCACAGGATATACG
ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCTATCCCTCACAAACCTCAAGAACTCACACCC
CCTTAAAGAGCATTTCACATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTCAAACGGTCACAAAATCTTGTACACTCCGAGTTTTCTGCTAAATTTTTTTGTGCAT
GCCAACAAAAATACAGGATTAACGTCTACCAAATTTGGGGCCAAAACTCCTCCTGAAAAAATTTT
AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCATCTGGCCAT
GAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGC
ATGCAGAAATATGAAGATGTGCCCACACGCTCGTTTCGTGGGTTGACTTAG
Found at i:20070382 original size:879 final size:879
Alignment explanation
Indices: 20067844--20071744 Score: 5169
Period size: 879 Copynumber: 4.4 Consensus size: 879
20067834 ATGAAGATGT
* * *
20067844 GCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGAT
1 GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
20067909 C-GAACTGAAGATTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCG
66 CAG-ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
** * * * * * *
20067973 TTAGGACACCATCGTCGGAGCATCTCTGGAGAACCTAACCGACGGCATTGGGGTTCTGACGATCG
130 TCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * * * * *
20068038 GGGGGGCCGA-GGGGGTGTGTGCACAGGATGTACGGTGGGTGCCGGTACTTGGCCCTTATATTGG
195 AGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
20068102 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGG
260 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
20068167 TTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCAGAAAGTCT
325 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
20068232 TGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATAACGTCT
390 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATAACGTCT
*
20068297 ACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTT
455 ACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTT
* *
20068362 GAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGAC
520 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
20068427 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAGAAATATGAAGATGTACCTAAA
585 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAA
* * *
20068492 CCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTTGGCGTAGTGCCCAC
650 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGC
* * *
20068557 CCGTCCGCC-CACCTGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
715 CCGCCCGCCGC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
** * * * * ** * *
20068621 ATTGGACCGGACCGAGGGTTGCAGCT-GCAGGATTGGCAGCACATAGAGGGGGACCCGATCGATC
778 ATCAGACCGAACTGAGGGTTGCAGCTAGCAGGATCGACAGCACGCAAAGGGGGACCCGACCGATC
* * *
20068685 CCCGGCTTGCGCATCCTGCCTCTCAGGCCGGCTGAGC
843 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
20068722 GCCCACACGCTCATTTCATGGGTTGACTTTGGCATACGGAGTTGATTCCCAGTCTAAGATCGGAC
1 GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** *
20068787 CGGACCGAGCATTGC-AGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
66 CAGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* *
20068851 TC-GGGCACCATTGCCGGAGCATCG-TCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATC
130 TCGGGGCACCATCGCCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
*
20068914 -AGGGGGGCCGGGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
194 GA-GGGGGCCGAGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
20068978 TGGCCCCCTATCCCTCATCAAACCTCGGGAACT-ACA-CCCCTTAAAGAGCATTTGAGATTTTAC
257 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
20069041 AGGTTTGCTCCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAGAA
322 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
***
20069106 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATTGTG
387 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATAACG
* * *
20069171 TCTACCATGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CAGAACCGCAAAATA
452 TCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCTCA-AACCGCAAAA-A
* **
20069235 -TTTTGAAAATCATGAAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTA
515 GTTTTGAAAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * *
20069299 AGGGACCATTGTATGAATTTACAAGTCATAAAAAAGGCTTTGGCA-GATAGAAATATGAAGATGT
579 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-TAGAAATATGAAGATGT
* * * *
20069363 GCCTAAACCCACTTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT-TCGG-TCAGCGT
643 ACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCT-GGCGT
* * ** * * * * * *
20069426 AATGCCTGCCCGCCTATCCGTCCACTTGTTTCGTCTGTTGGATGAGGCATAC-GAAGTTCATTCC
706 AGTGCCCGCCCGCC-CGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCC
* *
20069490 CAGTCTAAGATCAGACCGAACTGAGGGTTGC-GGTAGTAGGATCGACAGCACGCAAAGGGGGACC
769 CAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCTAGCAGGATCGACAGCACGCAAAGGGGGACC
*
20069554 CAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
834 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
20069600 GCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
1 GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
*
20069665 CAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCATCGT
66 CAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
** * ** * *
20069730 CGGGGCACCATCATCGGAGCAACGCTGGAGAACCTGATTGACGGCATTGGGGTTCCGATGATCGA
131 CGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGA
*
20069795 GGGGGCCGAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
196 GGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * * *
20069860 CCCCTATCTCTCATCAAACCTCGAGAACTCACACCCGCTTAAAGAGTATTTTAGATTTTATAGGT
261 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
20069925 TTGCAGCCAGTAGCCTTTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATTGTCACAAAATCTT
326 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
20069990 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA
391 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATAACGTCTA
* * *
20070055 CCAAGTCTGGGGCCAAAATTCCTTCCGAAAAAATTTAAAAAAATCTCAAACCGTAAAAAGTTTTG
456 CCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTG
* *
20070120 AAAATCGTGAAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
521 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
20070185 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAAC
586 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAAC
* * * *
20070250 CCACCTACGACCCTATCGATCAACGGCTTGCGCATCCCATCTCTTTGGCTGGCGTAGTGCCCGCC
651 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCC
* * *
20070315 GGCCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGAT
716 CGCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
* * * *
20070380 CAGACCGAATTGAGGGTTGCAGCTA-CAGGATCAACAGCACGCAGAGGGGGACCCGACCGATCCT
780 CAGACCGAACTGAGGGTTGCAGCTAGCAGGATCGACAGCACGCAAAGGGGGACCCGACCGATCCC
* * *
20070444 CGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGGGC
845 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
20070479 GCCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
1 GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * * * *
20070544 TGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGC
66 CAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * *
20070609 CGAGGCACCATCGCCGGAGCATCGCCGTAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGG
131 CGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGA
*
20070674 GGGGGCCG-GGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCGTTATATTGG
196 GGGGGCCGAGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
20070738 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATG
260 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * * *
20070803 TTTGCCGGCAGTAGCCATCAAAATGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCT
325 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * *
20070868 TGTACACTTTGAGTTTTTAGCTTATTTTTTTTGTGCATGCCAACAAAAATAAAAGGATGACATCT
390 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATAACGTCT
* * * * *
20070933 ACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTGAAAAAATCCCAAACCGCAAAAAGTTTC
455 ACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTT
* * * * * * *
20070998 AAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAGGGATTAAGTGAC
520 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * * *
20071063 CATTGTATGAATATACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCTTGAA
585 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAA
* * * *
20071128 CCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGC
650 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGC
* *
20071193 CCG--C-CAGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
715 CCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
* * * *
20071255 CCGACCGGA-TCGAGGGTTGCAGC-AGCAGGATCGACAGCATGCAAATGGGGACCCGACCGATCC
780 CAGACCGAACT-GAGGGTTGCAGCTAGCAGGATCGACAGCACGCAAAGGGGGACCCGACCGATCC
* * * ** *
20071318 CCGGCTTGCGCATCTCGGCCCTCTGGTCGATTGAAC
844 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
** *
20071354 GATCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATCCGG
1 GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT----A-----
* * *
20071419 AGTTCATTCCCACTCTAAGATCGGATCACACCGAGGGTTGCGACAGCACATGCTAGGCTTGGGCA
57 AG---------A-TC--AGA-C----CAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * * *
20071484 TGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACTGGAGCATTG-TCGGAGAACCTGAC
105 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCT-GGAGAACCTGAC
* * * * *
20071548 CGGCGGCATTGGGGTTCCGACGATCG-GGGGG--GCGGGGGGTGTGCGCATATGATGTGTGGTGA
169 CGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGG
* *
20071610 GTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCTC
234 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
20071674 ATAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCAATAGCCATTAAAGTGTCTGAAATGGGGAC
299 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
20071739 ACTTTT
364 ACTTTT
20071745 ACAAGCCATA
Statistics
Matches: 2648, Mismatches: 314, Indels: 103
0.86 0.10 0.03
Matches are distributed among these distances:
874 2 0.00
875 182 0.07
876 3 0.00
877 279 0.11
878 613 0.23
879 1078 0.41
880 217 0.08
881 2 0.00
884 2 0.00
893 1 0.00
894 2 0.00
896 2 0.00
897 99 0.04
898 45 0.02
899 6 0.00
900 5 0.00
901 110 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (879 bp):
GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
CGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGA
GGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATAACGTCTA
CCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTG
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCC
CGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
AGACCGAACTGAGGGTTGCAGCTAGCAGGATCGACAGCACGCAAAGGGGGACCCGACCGATCCCC
GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
Found at i:20071419 original size:26 final size:26
Alignment explanation
Indices: 20071382--20071435 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
20071372 TGGGTTGACT
*
20071382 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCACTC
*
20071408 TAGGCATCCGGAGTTCATTCCCACTC
1 TAGGCATACGGAGTTCATTCCCACTC
20071434 TA
1 TA
20071436 AGATCGGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCACTC
Found at i:20072087 original size:26 final size:26
Alignment explanation
Indices: 20072051--20072103 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20072041 GTTGACTTAG
* *
20072051 GCATACGGAGTTCTTTCTCGATCTAA
1 GCATACGGAGTTCATTCCCGATCTAA
*
20072077 GCATACGGAGTTGATTCCCGATCTAA
1 GCATACGGAGTTCATTCCCGATCTAA
20072103 G
1 G
20072104 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCGATCTAA
Found at i:20072869 original size:26 final size:26
Alignment explanation
Indices: 20072840--20072892 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20072830 CAGACCACTG
20072840 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20072866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20072892 G
1 G
20072893 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20073566 original size:786 final size:789
Alignment explanation
Indices: 20072050--20073622 Score: 2336
Period size: 786 Copynumber: 2.0 Consensus size: 789
20072040 GGTTGACTTA
* * * *
20072050 GGCATACGGAGTTCTTTCTCGATCTAAGCATACGGAGTTGATTCCCGATCTAAGATCGGACCGGA
1 GGCATACGGAGTTCATTCCCGATCTAAGCATACGGAGTTCATTCCCGATCTAAGATCGGACCAGA
* * * *
20072115 CTGAAGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTCTCTTCACCGGG
66 CTCAAGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTAGTGCCGCATTTCTCTTCACCGGG
* * * ** *
20072180 GCAACATCGTCGGAGCATCACTAGAGAACCTGACCGGTGGCATTAGGGTTCCGGTGATCGGGGGG
131 GCAACATCGCCAGAGCATCACCAGAGAACCTGACCGACGGCATTAGGGTTCCGATGATCGGGGGG
* * *
20072245 GCCGGGGGGTGTACGCAGATGATGTGGGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTA
196 GCCGGGGGGTGTACGCACATGATGTGCGATGGGTACTGGTACTTGGCCCCTATATTGGCCCCCTA
* * *
20072310 TCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTT
261 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTG
*
20072375 CCAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAA
326 CCAGTAACCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACAA
* *
20072440 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACCTCTACGAAG
391 TTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACCTCTACCAAG
* * * * *
20072505 TTTGGGTCCAAAACTCCTTTCGAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
456 TTTGGGTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAT
*
20072570 CGTGAAAAATAGAAAACAAGTCCTCTTCCCATGAAACTAGACGTGAACGCTTAAGGGACCATTGT
521 CGTGAAAAATAGAAAACAAGTCCTCTTCCCATGAAACTACACGTGAACGCTTAAGGGACCATTGT
*
20072635 ATGAATTTACAAGCCATAAAAATGGAATTGGCATGTAGAAATATGAAGATGTGCCAAAACCCACC
586 ATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACC
* *
20072700 TACCACCCTATCGATGCACGGCTTGCACATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
651 TACCACCCTATCGATCCACGGCTTGCACATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCA
* * * * * *
20072765 GCCCGCCTACTCATTTCGTTGGTCGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGAC
716 ACCCACCCACTCATTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
20072830 CAGACCACT
781 CAGACCACT
20072839 GGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTCCC-AGTCTAAGATCGGACCA
1 GGCATACGGAGTTCATTCCCGA-TCTAAGCATACGGAGTTCATTCCCGA-TCTAAGATCGGACCA
* * * *
20072902 GAC-CAAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTAGTGCCGTATTTTTCTTCACC
64 GACTCAA-GGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTAGTGCCGCATTTCTCTTCACC
* * * * *
20072966 GGGGCAACATCGCCAGAGTATCACCGGAGAACCTGACCGACGGTATTGGGGTTCTGATGATC-GG
128 GGGGCAACATCGCCAGAGCATCACCAGAGAACCTGACCGACGGCATTAGGGTTCCGATGATCGGG
* *
20073030 GGGGCCGGGGGGTGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCC
193 GGGGCC-GGGGG-GTGTACGCACATGATGTGCGATGGGTACTGGTACTTGGCCCCTATATTGGCC
*
20073095 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
256 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
20073160 TACTGCCAGTAGCCATTAAAGTTTCTGAAATGGAGACACTTTTTTCAAATGG-CAC-AAATCTTG
321 TACTGCCAGTAACCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * * *
20073223 TACACTTTGAGTTTTTAGCTCATTTTTTTTGTGCATG-CTAACAAAAATACAAGGATCACGTCTA
386 TACAATTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACCTCTA
*
20073287 CCAAGTTTTGGG-CCAGAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTC
451 CCAAG-TTTGGGTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTC
** * * * * *
20073351 -AAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGCAGGCTTAAGGGAC
515 AAAAATCGTGAAAAATAGAAAACAAGTCCTCTTCCCATGAAACTACACGTGAACGCTTAAGGGAC
* *
20073415 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
580 CATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCAAAA
* * * **
20073480 CCCACCTACCACTCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGGTTTAGTGCCCGC
645 CCCACCTACCACCCTATCGATCCACGGCTTGCACATCTCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * *
20073545 CCGCCAACCCACCCGCTCATTTCGTCGATTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGA
710 CCGCCAACCCACCCACTCATTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGA
20073610 TCAGACCAGACCA
775 TCAGACCAGACCA
20073623 AGGGTTGCGG
Statistics
Matches: 701, Mismatches: 77, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
786 244 0.35
787 74 0.11
788 59 0.08
789 167 0.24
790 157 0.22
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (789 bp):
GGCATACGGAGTTCATTCCCGATCTAAGCATACGGAGTTCATTCCCGATCTAAGATCGGACCAGA
CTCAAGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTAGTGCCGCATTTCTCTTCACCGGG
GCAACATCGCCAGAGCATCACCAGAGAACCTGACCGACGGCATTAGGGTTCCGATGATCGGGGGG
GCCGGGGGGTGTACGCACATGATGTGCGATGGGTACTGGTACTTGGCCCCTATATTGGCCCCCTA
TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTG
CCAGTAACCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACAA
TTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACCTCTACCAAG
TTTGGGTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAT
CGTGAAAAATAGAAAACAAGTCCTCTTCCCATGAAACTACACGTGAACGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACC
TACCACCCTATCGATCCACGGCTTGCACATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCA
ACCCACCCACTCATTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
CAGACCACT
Found at i:20074612 original size:26 final size:26
Alignment explanation
Indices: 20074575--20074627 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20074565 GTTGACTTAG
*
20074575 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20074601 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20074627 G
1 G
20074628 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:20077156 original size:26 final size:26
Alignment explanation
Indices: 20077127--20077182 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
20077117 TGTGTTGACT
20077127 TAAGCACACAGAGATCGTTCCCAGTC
1 TAAGCACACAGAGATCGTTCCCAGTC
* * * *
20077153 TAAGCATACGGAGTTCTTTCCCAGTC
1 TAAGCACACAGAGATCGTTCCCAGTC
20077179 TAAG
1 TAAG
20077183 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCACACAGAGATCGTTCCCAGTC
Found at i:20078038 original size:26 final size:26
Alignment explanation
Indices: 20078008--20078060 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20077998 GTTGACTTAG
*
20078008 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20078034 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20078060 G
1 G
20078061 ATGGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20078939 original size:26 final size:26
Alignment explanation
Indices: 20078903--20078954 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
20078893 TGACTTAGGC
20078903 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
20078929 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
20078955 TCGGATCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:20079301 original size:894 final size:895
Alignment explanation
Indices: 20076254--20079868 Score: 4692
Period size: 894 Copynumber: 4.1 Consensus size: 895
20076244 TTACTTAGGG
* * * * * * *
20076254 ATACGGAGTTCATTCCCAATCTAAAATCGAACCCGG-CTGAGGGTTGCGGCAGCACATGCTGGCC
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTACGGCAGCACATGCTGGGC
* * * * **
20076318 TCGGGCATGTTCTAGTGCCATATTTTTCTT-TGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
65 TCGGGAATGTGCTGGTGCCACATTTTTCTTCT--CGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * *
20076382 ACTTGACCGGCGACATTGGGGTTCCGGCAATCGGGGGGGCCGAGGGGGTGTGTGCACATGATGTG
128 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
20076447 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAAGTCAT
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCAC
* * **
20076512 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTATGGAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
20076577 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
20076642 TGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAGCCTCATTCCGAAAAA
388 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *** * *
20076707 ATTTTAAAATATCCTAAACTATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
20076772 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
20076837 TTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
583 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
* *
20076902 CATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCG--C-C-CGCCTGCTCGTTTCGTCGGTTGGC
* * ** * *
20076967 TTAGGCATACGGAGTTCTTTACCAGTCTAAGATCGGATTGGACCGAGGGTTATGGCAGCAGGATC
706 TTAGGCATACGAAGTTCATT-CCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCAGGATC
* * * * ** * * * * * *
20077032 -GATAGCACGTAAAAGGGGACCCGGTCGATCCCCAGCTTACGTATACTGCCCCTCTGGCCGACTG
770 AGACAGCACGCAGAAGGGGA-CTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
20077096 AGCGCCCGCACGCTCGTTTCATGTGTTGACTTAAGCACACAGAGATCGTTCCCAGTCTAAGC
834 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * * * *
20077158 ATACGGAGTTCTTTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT
* ** *
20077223 CGGGCATGTGCTGCTGGTGCCGTATTTTTCTTCGCTGGGGCACCA---TC---G-----CCGGAG
66 CGGG-A-ATG-TGCTGGTGCCACATTTTTCTTCTC-GGGGCACCATCGTCGGAGCATCACCGGAG
*
20077277 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
127 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * *
20077341 TCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCGCTCATCAAA-ATTCAAGAACTT
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-AAGAACTC
* * *
20077405 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCTATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
* *
20077470 ATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * *
20077534 TGTGCAAGCCAACAAAAATAAGTGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
386 TGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** *
20077599 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
20077664 TTGGCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * ** *
20077729 CATTGGCACATAAAAATATAAAGATG-GCCAAAACCCACCTACCGTCCTATCGATCCACGGCTTG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTG
* *
20077793 CGCATCCCGTCTCCCTGGCCGGCCTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGT-------CGCCCGCCCGCCTGCTCGTTTCGTCGGTTG
* * * * * * * *
20077858 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGTCTGAGGGTTGCAATAGTAGGA
704 GCTTAGGCATACGAAGTTCATT-CCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCAGGA
* *
20077923 T-AGACAGCACGCA-AA-AGG---G---GA--CCCGG--T-CG-ATCCCGCCCCTCTGGCCGGTT
768 TCAGACAGCACGCAGAAGGGGACTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
20077973 GAGCGCCTGTACGGTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* *
20078036 ATACAGAGTTCATTCCCAGTCTAAGATGGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCT
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT
* * * * *
20078101 CGGGCATGTGCTGGTG-C-CATTTTTCATCTCCGGGAAGCCATCGTCGGAGCATCACCGAAGAAC
66 CGGGAATGTGCTGGTGCCACATTTTTCTTCTCGGGGCA-CCATCGTCGGAGCATCACCGGAGAAC
* ** * * * *
20078164 CTGACCGATGGCATTGGGGTTTTGACGATCGGGGCGGCCGGGGGGGTTTTGCGCACATGATGTAC
130 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGC
* * * *
20078229 GATGGGTGCTGGAACTTGGCCCTTATATTGGACCCCTATCTCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACA
* * *
20078294 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCAAGTAGCCATTAAAGTGTCGAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
20078359 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
20078424 GCATGCCAAAAAAAATAAAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
389 GCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
20078489 TTTTAAAAAAT-CTCAAACCGGAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
454 TTTTAAAAAATCCT-AAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
20078553 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCA
518 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** *
20078618 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
* * * * *
20078683 CATCCCGTCTCTCTGGCCGGCGTAGT-GCCTGCCTGTC-GCTCGTTTCGTCGGTCGGTTTAGGCA
648 CATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
20078746 TATGGAGTTCATTCCTAGTCTAAGATTGGATC-GACCGAGGGTTACGGCAGCAGGATCAG-CAGC
713 TACGAAGTTCATTCC-AGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCAGGATCAGACAGC
* * * *
20078809 ACGCAGAGGGGGACCTGACCGATCCCCGGCTTGTGCATCCCGCCGCTCTGGCCGGCTAAGCGCCC
777 ACGCAGAAGGGGA-CTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
20078874 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
*
20078929 ATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCT
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT
* *
20078994 CGAGAATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCACCGGAGAAC
66 CGGGAATGTGCTGGTGCCACATTTTTCTTC-TCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
** **
20079059 CTGACCGACGGCATTGGATTTTTGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
130 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
** * *
20079124 ATGGGTGCTGGTACTTGGCCCTTATATTGGCTTCCTGTCCCTCATCAAACCTTGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACAC
*
20079189 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTAAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
*
20079254 GGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT-TG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
20079317 CATGCCAACTAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
390 CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
20079382 TTTAAAAAATCCTGAATCGCAAAAAGTTTTAAAAATCGTGAAAAACATAAAACGAGTCGTCTTGC
455 TTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
20079447 CATGAAACTTGACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
20079512 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGACTTGCACA
585 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCA
* * * *
20079577 TCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCTGCTCATTTCGTCGATTGGCTTAGGC
650 TCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
20079642 ATACGAAGTTCATTCCAGTCTAAGATCGGACCAGATCGAGGGCTGCGACAGAAGGATC-GGCA-C
712 ATACGAAGTTCATTCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCAGGATCAGACAGC
* * * * *
20079705 ACGCAGAAGGGGAATCAGCTGATCCCCGACTTGCGCATCCCGCCCCTC-GGCCGGCTGAGCGTCC
777 ACGCAGAAGGGGACTGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
20079769 GCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
*
20079824 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
20079869 GCACCCGCAC
Statistics
Matches: 2373, Mismatches: 279, Indels: 127
0.85 0.10 0.05
Matches are distributed among these distances:
872 4 0.00
873 13 0.01
874 1 0.00
875 8 0.00
876 4 0.00
878 158 0.07
879 55 0.02
880 11 0.00
882 4 0.00
884 44 0.02
885 6 0.00
886 183 0.08
887 210 0.09
888 61 0.03
889 5 0.00
891 3 0.00
892 262 0.11
893 299 0.13
894 397 0.17
895 375 0.16
896 112 0.05
897 66 0.03
901 1 0.00
903 2 0.00
904 59 0.02
906 3 0.00
907 27 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT
CGGGAATGTGCTGGTGCCACATTTTTCTTCTCGGGGCACCATCGTCGGAGCATCACCGGAGAACC
TGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GAAGTTCATTCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCAGGATCAGACAGCACGC
AGAAGGGGACTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
Found at i:20079832 original size:26 final size:26
Alignment explanation
Indices: 20079796--20079848 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20079786 GTTGACTTAG
*
20079796 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20079822 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20079848 G
1 G
20079849 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20080174 original size:26 final size:26
Alignment explanation
Indices: 20080138--20080188 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20080128 TGACTTACGG
20080138 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
20080164 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
20080189 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:20082364 original size:900 final size:898
Alignment explanation
Indices: 20079950--20083862 Score: 5350
Period size: 901 Copynumber: 4.3 Consensus size: 898
20079940 CCGGCGTGCT
* * * * *
20079950 CGCCCCCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAAATCAGACCAG
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * ** * ***
20080015 ACCGAGGGTTACAGTAGCAGGATCGGTAGCACGCAGAGGGGGAATCGATTGATCCTTAGCTTGCG
66 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * *
20080080 CGTCCCGCCCCTCTGGCCGACT-AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTACGG-ATACG
131 CATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA-GGCATACA
*
20080143 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCAAGGGT
194 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACA-GACCGAGGGT
* * * *
20080208 TGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
258 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC
* ** *
20080273 GTCGGAGCATCGTCGGAGAACCTGACCGGGGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGG
323 GTCGGAGCATCCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCAGGGGGGCCGGGGG
* **
20080337 GTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCAATTATATTGGCCCCCTATCCCTCAT
388 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * * *
20080402 CAAACGTCGAGAACTGACACCTCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGC
453 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
20080467 CATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATTGTCACAAAATCTTGTACACTTTGACTT
518 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTT
* * * ***
20080532 TTTAGCTGCATTTTTTTGTGGATGCC-AACAAAAATACAAGGATCACGTCTATCAAGTTTGATTC
583 TTTAGCTGAATTTTTTTGTGCATGCCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * **
20080596 AAAAACTCCTTTCAAAATAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCATGAAA
648 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAA
* * * *
20080660 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTATGAATC
712 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
20080725 TACAAGCCATAAAAATGGCATTGGCGCACAGAAATATGAGGATGTACCTAAACCCACCTACCACC
777 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACC
* * * * * * *
20080790 CCATCGATCCATGACTTGCGCATCCCGTCTTTCTGGCCGGAGTAGTGCCCACCCGCT
842 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* *
20080847 CGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * *
20080912 ACGGAGGGTTATGGCAGCAGGATCGGCACCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCG
66 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* *
20080977 CATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAG
131 CATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* * * * * *
20081042 AGTTCATTCCTTA-TGTAATCATACGAAGTTCATTCCCAGTCCAAGATCGGACTGGACC-AGGGG
195 AGTTCATTCC-CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGACCGA-GGG
* ** * * * *
20081105 TTGCGATAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTCCTTCACCAGGGCACCAT
257 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT
*
20081170 CGTCGGAGCATCGC-CGGAGAACTTGACCGACGGCATTGGGGTTCCGACAATCAGGGGGGCCGGG
322 CGTCGGAGCATC-CTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCAGGGGGGCCGGG
20081234 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
386 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
20081299 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTGACAGGTTTGCTGCCAGTA
451 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
20081364 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAG
516 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAC
* *
20081429 TTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGATCACCTCTACCAGGTTTGGG
581 TTTTTAGCTGAATTTTTTTGTGCATGCCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* ** *
20081493 GCCAAAACTCCTTCCAAAAAAATTTCAAAAAATTTTGAACCGCAAAAAGTTTCAAAAATCATGAA
646 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAA
*
20081558 AAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
711 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** * * *
20081623 TTACAAGAAATAAAAGTGGCATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCAC
776 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCAC
* *
20081688 CCTATCAATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
841 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * *
20081746 CGCCCGCTCGTTACCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAAATCA
1 CGCCCGCTCGTT-TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * ** *
20081811 GACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGT
65 GACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
**
20081876 GCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACA
130 GCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
*
20081941 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGT
194 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGT
* * * * *
20082006 TATGGCAGCACATGCTGGGCTTGAGAATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATC
258 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC
* * *
20082071 GTCGGAGCATCACT-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
323 GTCGGAGCATC-CTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCAGGGGGGCC-GGG
* ** *
20082135 GGGTGTGCGCACATGATGTGCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCTTCCTGTCCCTC
386 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
20082200 ATCAAACCTTGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
451 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * * *
20082265 GGCATTAAAGTGTGTGAAGTGGAGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAC
516 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAC
* * *
20082330 TTTTTAACTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGATGACGTCTATCAAGTTTGGG
581 TTTTTAGCTGAATTTTTTTGTGCATGCCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
20082394 GGCAAAAATCGTTCCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAA
646 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAA
*
20082459 AAATAGAAAACGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
711 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
20082524 TTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATCTACATAAACCCACCTACCAC
776 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCAC
* * *
20082589 CCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGTC
841 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * *
20082647 CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATGCCTAGTCTAAGATCGGACCAG
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * ** * * * * * *
20082712 ACTGAGGGTTACAGCAGCAGGATCGATAGTACACTGAGGGGGACCCGGTTGATCCCCGACTTGCG
66 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * * *
20082777 CATCCCGCCCCTCTGGCCGACTGAGCGCCCACTCGCTCGTTTCGTTGGTTGACTTAGGCATACGG
131 CATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* * * *
20082842 AGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGGTTGGACTGGACCGAGGGTT
195 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGACCGAGGGTT
* * * *
20082907 ACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCCTCGTCGGGGCACCATCG
259 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG
* * * * * * * *
20082972 CCAGAGCATCGTCGGAGAGCC-GGCACTAGCGGCATTAGGGTTCCGGCAATCAGGGGGGCCGGGC
324 TCGGAGCATCCTCGGAGAACCTGAC-CGA-CGGCATTGGGGTTCCGACAATCAGGGGGGCCGGG-
* *
20083036 GGGTGTGCGCACATGATGTGCGATGGTTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTC
386 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * * *
20083101 ATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTCAGATTTTACAGGTTTGTTACCAGTA
451 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
20083166 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTTTGA
516 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGA
* * * *
20083231 GTTTTTCGCTAAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCATGTCTACCAAGTTTGG
580 CTTTTTAGCTGAATTTTTTTGTGCATGCCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** *
20083295 GTCCAAAACTCCATCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTATGA
645 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGA
*
20083360 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAA
710 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *** * * *
20083425 TTTACAAGCCAGAAAAATGGCATTGGCATGTAGAAATATGAAAAGGTGCCTAAACCCACCTACCA
775 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCA
* * * * *
20083490 CCGTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCCGCATAGTGCCCGTCCGCCCCCC
840 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCC
* * * *
20083553 CTCCCGCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGG
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * *
20083618 ACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACA
66 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * * * **
20083683 CATCCCGCCCCTCTGGCCGGTTAAGCGCCCGCACACTCATTTTATGGGTTGACTTAGGCATACAG
131 CATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* * * * *
20083748 AGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTATAAGGTCAGATCAGACCGAGGGTT
195 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTT
* * * *
20083813 ACGGCAGCACATGCTAGGCTTGGGCATGTGTTGGTGCTGCATTTTTCTTC
259 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
20083863 GCCAGGCCAC
Statistics
Matches: 2653, Mismatches: 333, Indels: 51
0.87 0.11 0.02
Matches are distributed among these distances:
897 131 0.05
898 191 0.07
899 485 0.18
900 612 0.23
901 688 0.26
902 278 0.10
904 1 0.00
906 265 0.10
907 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
CATCCCGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTAC
GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC
GGAGCATCCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCAGGGGGGCCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTT
AGCTGAATTTTTTTGTGCATGCCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
Found at i:20082870 original size:26 final size:26
Alignment explanation
Indices: 20082834--20082886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20082824 GTTGACTTAG
20082834 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20082860 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20082886 G
1 G
20082887 GTTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20083777 original size:26 final size:26
Alignment explanation
Indices: 20083740--20083792 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20083730 GTTGACTTAG
* *
20083740 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
20083766 GCATAC-GAAGTTCATTCCCAGTATAA
1 GCATACAG-AGTTCATTCCCAGTATAA
20083792 G
1 G
20083793 GTCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:20086435 original size:26 final size:26
Alignment explanation
Indices: 20086399--20086478 Score: 160
Period size: 26 Copynumber: 3.1 Consensus size: 26
20086389 GGGTTGACTC
20086399 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
20086425 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
20086451 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
20086477 AG
1 AG
20086479 ATTGGACCAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAGTCTA
Found at i:20088202 original size:26 final size:26
Alignment explanation
Indices: 20088166--20088216 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20088156 TGACTTAGGT
*
20088166 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAAAGTTCATTCCCAGTCTAAGC
20088192 ATACAAAGTTCATTCCCAGTCTAAG
1 ATACAAAGTTCATTCCCAGTCTAAG
20088217 GTCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
ATACAAAGTTCATTCCCAGTCTAAGC
Found at i:20089875 original size:26 final size:26
Alignment explanation
Indices: 20089839--20089891 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20089829 GTTAACTTAG
* * *
20089839 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAATCTAA
20089865 GCATACAGAGTTCATTACCAATCTAA
1 GCATACAGAGTTCATTACCAATCTAA
20089891 G
1 G
20089892 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAATCTAA
Found at i:20090786 original size:26 final size:26
Alignment explanation
Indices: 20090711--20090789 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
20090701 GTTGACTTAG
* * *
20090711 GCATACAGAGTTCATTTCCAGTCCAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20090737 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20090763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20090789 G
1 G
20090790 ATCGGATCGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20091190 original size:895 final size:885
Alignment explanation
Indices: 20088979--20092384 Score: 4367
Period size: 895 Copynumber: 3.8 Consensus size: 885
20088969 GTTGACTTAG
* * * *
20088979 GCATACGGAGTTCATTCTCAATCTACGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-CGAACCGAGGGTTGCGGCAGCACATGCTGGG
*
20089044 CTAGGGCATGTGCTGGTGCCGCATTTTTC-T--TC---G--CT-GGAGCATCGTCGGAGAACCTG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTCGGAGCATCGTCGGAGAACCTG
* * *
20089100 ACCGACGGCATTGGGGTTCCGGCGATC-GAGGGGCTGGGGGGTGTGCGCTCATGATGTGCGATGG
130 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGG
20089164 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
20089229 TTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCACTAAAGTGTCTA-ACA-TGGGG
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGA-ATTGGGG
* * * *
20089292 ACACTTTTTTCAGATGGTCACAAAATCTTGTGCACTTCAAGTTTTTAGCTGAATTTTTTTTTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
* * *
20089357 TGCCAAAAAAAATACAAGAATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-TTT
* * * *
20089422 TAAAAAATCCCGAACC-TCAAAAA-TTTTCAAAAATCGTGAAAAATAGCAAACGAGTCGTCTTGC
453 AAAAAAATCCCGAACCGT-AAAAAGTTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* **
20089485 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATGGCATT
516 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * *
20089550 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCA
581 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
* * * *
20089615 TCCCGTCTCTTTGGCCGGCGTAGAT-CCCGCCCGCCCGCCCGCCCCTCGTTTTGTCGGTTGGCTT
646 TCCCGTCTCTCTGGCCGGCGTAG-TGCCTGCCCG--CG-CCGCCCCTCGTTTTATCGATTGGCTT
* * *
20089679 AGGCATACGAAGTTCATTCCCAATCTAAGATAAGACC-GAGCAAGGGTTGCGGCAACAGGATCGA
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACCGGA-CAAGGGTTGCGGCAACAGGATCGG
* * * * * *
20089743 CAGCACGCGGAGGGGGACCTGGCTGATCCTCGGCTTGCACATCCCACCGTTCTGGCTGGCTAAGT
771 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGG-ATG--CATCCCA-CGTTCTGGCTGGCTAAGC
* **
20089808 GCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 GCACGCACGCTCGTTTC--CAGTT-ACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
20089865 GCATACAGAGTTCATTACCAATCTAAGATCGGACTGGACCAAGGGTAGCGGTAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGAC-GAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
20089930 CTCGGGCATGCGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA-C-TCGGAGCATCGTCGGAGA
* *
20089995 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGAGGGGGGTGTGCGCACATGATG
125 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C--TGGGGGGTGTGCGCACATGATG
* * * * *
20090060 TGCGATGGGTGCGGGTACTTGGCCCTAATATTGGCCCCCAATCCCTCATAAAACCTTGAGAACTC
187 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
20090125 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAACTGTCTGGA
252 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGA
*
20090190 A-TGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
317 ATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
20090254 TTATGCGTGCCAACAAAAATACATGGATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAA
382 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * *
20090319 AAAATTAAAAAAATCCCGAACCGTAAAAAGTTTTGCAAATCATGAAAAATAAAAAACGAGTCGTC
447 AAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
20090384 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
20090449 CATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
577 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
20090514 CACATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGTCTGCTCACCCACTCATTTTATCGATTG
642 CACATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG-C-GC-CGCCC-CTCGTTTTATCGATTG
* * *
20090579 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGATCAAGGGTTACGGCAACAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACCGGA-CAAGGGTTGCGGCAACAGGA
* * * * *
20090644 TCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCCGGATGCA-CGCTCGTTTCGTGGGTTGACT
767 TCGGCAGCACGCAGAGGGGGACCCGGCCGAT-CCCCGGATGCATCCCACG-TTC-T-GGCTGGCT
* ** * * * * *
20090708 TAG-GCATACAGAGTTCATTTCCAG-T-C-CAAGCATACGGAGTTCATTCCCAGTCTAA
828 AAGCGCACGCA-CGCTCGTTTCCAGTTACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
20090763 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAACACATGTTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-CGAACCGAGGGTTGCGGCAGCACATGCTGGG
* *
20090828 CTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCTTCGTCGGAGCATCGTCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA----C-TCGGAGCATCGTCGGAGA
* * *
20090893 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATATGC
125 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
** *
20090958 GATGGGTGCTGGTACTCCGCCCTTATATTGGCCCCCTATCCCACATCAAAACC-CGAGAACTCAC
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCAC
*
20091022 ACCCCCTTAAAGAGCATTTGAGTTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAT
254 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAAT
* *
20091086 TGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
20091151 GTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
384 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * *
20091216 ATTTTAAAAAATCCCAAACCGTAAAATGTTTTGAAAATCTTGAAAAATAGAAAACGAGTTGTCTT
449 ATTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
20091281 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
20091346 TTGGCACGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTGTCGATCCACGACTTGCG
579 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
* * * *
20091411 CATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGC-CCG---TTCGTTTCATCGATTGGCTTAG
644 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCGCCGCCCCTCGTTTTATCGATTGGCTTAG
* * * * * *
20091472 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGTGATGCGACAGCAGGATCGGCA
709 GCATACGGAGTTCATTCCCAGTCTAAGATAAGACCGGAC-AAGGGTTGCGGCAACAGGATCGGCA
* * ** * *
20091537 ACACGCAGAGGGGGACCCTGCCGATCCCC-GACTTTCGCATCCCACCCCTCTGGCCGGCTGAGCG
773 GCACGCAGAGGGGGACCCGGCCGATCCCCGGA---T-GCATCCCA-CGTTCTGGCTGGCTAAGCG
20091601 CACGCACGCTCGTTT-CATGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 CACGCACGCTCGTTTCCA---GTT-ACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
20091657 GCATACTTAGTTCATTGCCAGTCTAAGATTGGACCATACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACGA-ACCGAGGGTTGCGGCAGCACATGCTGGG
* *
20091722 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA--C----CATCATCGGAGAACCTG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTCGGAGCATCGTCGGAGAACCTG
** ** * * * * *
20091781 ACCGATAGCATTGGGGTTATGGCGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGTGATGG
130 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGG
*
20091846 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
20091911 TTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTA-AAATAGGGA
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATTGGGGA
* * *
20091975 CACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTCTGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* ** *
20092040 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAAACCTTTCGAAAAAATTTA
390 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTA
** ** *
20092105 AAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAT
454 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
20092170 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCAGAAAAATGGCATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
20092235 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGTACATCC
584 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCC
* ** ** *
20092300 CGTCTCTCTGGCCGACGTAGTGCCCACCCGC-CCG---CTCGTTTCGTCGGA-TAGCTTAGGCAT
649 CGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCGCCGCCCCTCGTTTTATC-GATTGGCTTAGGCAT
20092360 ACGGAGTTCATTCCCAGTCTAAGAT
713 ACGGAGTTCATTCCCAGTCTAAGAT
20092385 CGGACTGGAT
Statistics
Matches: 2218, Mismatches: 244, Indels: 118
0.86 0.09 0.05
Matches are distributed among these distances:
882 5 0.00
883 288 0.13
884 265 0.12
885 5 0.00
886 87 0.04
887 100 0.05
888 14 0.01
889 11 0.00
890 5 0.00
891 3 0.00
892 2 0.00
893 3 0.00
894 125 0.06
895 464 0.21
896 5 0.00
897 1 0.00
898 172 0.08
899 3 0.00
900 44 0.02
901 8 0.00
902 10 0.00
903 213 0.10
904 330 0.15
905 50 0.02
906 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACGAACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTCGGAGCATCGTCGGAGAACCTGA
CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATTGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTAAA
AAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
TCTCTCTGGCCGGCGTAGTGCCTGCCCGCGCCGCCCCTCGTTTTATCGATTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATAAGACCGGACAAGGGTTGCGGCAACAGGATCGGCAGCACGCAG
AGGGGGACCCGGCCGATCCCCGGATGCATCCCACGTTCTGGCTGGCTAAGCGCACGCACGCTCGT
TTCCAGTTACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20091661 original size:26 final size:26
Alignment explanation
Indices: 20091631--20091683 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20091621 GTTGACTTAG
20091631 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
** *
20091657 GCATACTTAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20091683 G
1 G
20091684 ATTGGACCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20094156 original size:26 final size:26
Alignment explanation
Indices: 20094120--20094172 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20094110 GTTGACTTAG
*
20094120 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20094146 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20094172 G
1 G
20094173 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20094261 original size:892 final size:891
Alignment explanation
Indices: 20092356--20095779 Score: 4489
Period size: 878 Copynumber: 3.8 Consensus size: 891
20092346 GATAGCTTAG
* * * *
20092356 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
20092421 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-T-TCCG-GCA-CG---GAGA
* * * * *
20092486 ACCTAACCGGCGACGTTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATATGCG
124 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
20092551 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
189 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
20092616 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
254 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* *
20092681 GGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTG
319 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** * * *
20092746 CATGCCAAAAAAAATACGAGTCTCACGTGTACCAAGCTTGGAGCCAAAAATCCTTCTAAAAAAAT
384 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGAGCCAAAACTCCTTCCAAAAAAAT
* * * **
20092811 TTAAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
449 TTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
20092876 CATAAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
514 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
20092941 GGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCAAGGCTTGCGCA
579 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * ** *
20093006 TCCCGTCTCTCTAGCTGGCGTAGTGCCCGCCCGCCCGCACGCTCGTTTTATCGGTTGCCTTAGGC
644 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
20093071 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGA-TCGAGGGTTATGGTAGGAGGATCAACAG
709 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTATGGCAGCAGGATCGATAG
* * * * * *
20093135 CACGCAGAGGGGGAC-CCGACCGATCCCCGACTTGTGCATCCTGCCCCTATGGCTGG-TTGAGCG
773 CACGCAGAGGGGGACTCAG-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTT-AGCA
20093198 CCCGCACGCTT-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CCCGCACG-TTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
20093254 GCATACTTAGTTCATTCCTAGTCTAAGATTGGACTGGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
20093319 CTCGGGCATGTGCTGGTGCCGCCTTTTTGTTCGTCGGGGCACCA-T-C-GC-CGGAGAACCTGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTCCGGCACGGAGAACCTGAC
* * * * * * * *
20093380 CGGTAGCATTGGGGTTCTGGCGATCAGGGGGCCGGGGGGTGTGCGCTCTTGATCTGCGATGTGTG
131 CGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
20093445 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * * *
20093510 TAGAGCATTTGAGATTTTACAGCTTTCCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* * * *
20093575 TTTTTCAAATGGTCACAAAATCTTGTGCACTTCAAATTTTTAGCTGAATTTTTTTTGTGCACGCC
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCC
* *
20093640 AAATAAAAATACAAGGATCACTTCTACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTAAA
390 AAA-AAAAATACAAGGATCACGTCTACCAAGCTTGGAGCCAAAACTCCTTCCAAAAAAATTTAAA
* *
20093705 AAAATCCCGAATCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
454 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
20093770 AACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
20093835 GTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGAT-CACGGCTTGCACATCCCG
584 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
** * *
20093899 TCTCTCTGGCCGACGTAGTTTCCGCCTACCCGCCCGCCCTCTCATTTCGTCGGTTGGCTTAGGCA
649 TCTCTCTGGCCGACGTAG--T--GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
**
20093964 TACGGAGTTCATTCCCAGT-TGAAGATCGGACTGGACTGAGGGTTATGGCAGCAGGATCGATAGC
710 TACGGAGTTCATTCCCAGTCT-AAGATCGGACCAGACTGAGGGTTATGGCAGCAGGATCGATAGC
* * *
20094028 ACGCAAAGGGGGACTCAGCCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTTAGCACCT
774 ACGCAGAGGGGGACTCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTTAGCACCC
20094093 GCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
20094146 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
20094211 CTTGGGCATTTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-TCC-G-GCA-C---GGAGA
* * * * *
20094276 ACCGGACCGGTGGCATTAGGTTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACACGATGTGCG
124 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
**
20094341 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTGTCAAACCTCGAGAACTCACAC
189 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
20094406 CCCCTTGAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTCAAATGG
254 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* *
20094471 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTACTTTTTAGCTGAATTTTTTTGTG
319 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
20094536 CATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
384 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGAGCCAAAACTCCTTCCAAAAAAAT
** * ** * *
20094601 TTTGAAAAATCCCTAACCGTAAAAAGTTTTGAAAATCGTGAAAGTTAAAAAACGAGTCGTGTTGC
449 TTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
20094666 CATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
514 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
20094731 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAGCAGCCTATCGATTCACGGCTTGCGCA
579 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
20094796 TCCCATCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCTTGCCTGCTCGTTTCGTTGGTTGGCTT
644 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC---CC-GCTCGTTTCGTCGGTTGGCTT
* * * ** * ** *
20094861 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGGGGCAGTACTATCGG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTATGGCAGCAGGATCGA
* * * * * *
20094926 TAGCACGCAGAGGGGTACTCGGTCGATCCCCAGCTTGCGCATCAC-GCCCCTCTGGCCGACTGAG
770 TAGCACGCAGAGGGGGACTCAGCCGATCCCCGGCTTGCGCATC-CTGCCCCTCTGGCCGGCTTAG
* *
20094990 CACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
20095048 G-AT-C-G-G----------A-C------CGG--T---CCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
20095087 CTCGGGCATGTGCGGGTGCTGTATTTGTCTTCGTCGGGGCACCATCTCCAGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-TCC-G-G---CA-CGGAGA
* * *
20095152 ACCTGACCGGCGGCATTGGGGTTCCGGCAATCGGGGGGGCCAGGGGGGCTGTGCGCACATGATGT
124 ACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGG-TGTGCGCACATGATGT
* *
20095217 GCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
186 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
20095282 CACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
251 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
*
20095347 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
316 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
20095411 GTGCATGCCAAAAAAAATACAGGGATCATGTCTTCCAAGCTTGGGGCCAAAACTCCTTCCGAAAA
381 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGAGCCAAAACTCCTTCCAAAAA
* * * * *
20095476 AATTTTAAAAAATCTCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTCGTCT
446 AATTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
20095541 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGC
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
20095606 ATTGGCATGCT-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
576 ATTGGCACG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
20095670 CGCATCCCGTCTTTCTGGCCGACGTAGCGGCCGCCCGCCCGCCCGCCCGCTCG-TTCTGTCTGTT
640 CGCATCCCGTCTCTCTGGCCGACGTA---G-TGCCCGCCCGCCCGCCCGCTCGTTTC-GTCGGTT
* * * * *
20095734 GGCTTAGGCATATGGAGTTTAGTACCAGTCTAAGATCAGACCAGAC
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
20095780 CGACGGTTGC
Statistics
Matches: 2239, Mismatches: 246, Indels: 102
0.87 0.10 0.04
Matches are distributed among these distances:
876 98 0.04
877 11 0.00
878 319 0.14
879 197 0.09
881 4 0.00
882 13 0.01
887 231 0.10
888 50 0.02
889 215 0.10
890 3 0.00
891 3 0.00
892 281 0.13
893 5 0.00
895 2 0.00
898 114 0.05
899 1 0.00
900 3 0.00
901 225 0.10
902 231 0.10
903 233 0.10
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTCCGGCACGGAGAACCTGAC
CGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCACGTCTACCAAGCTTGGAGCCAAAACTCCTTCCAAAAAAATTTAAAAA
AATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTATGGCAGCAGGATCGATAGCACGCAGA
GGGGGACTCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTTAGCACCCGCACGTT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20097554 original size:26 final size:26
Alignment explanation
Indices: 20097518--20097570 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20097508 GTTGACTTAG
*
20097518 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20097544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20097570 G
1 G
20097571 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20098431 original size:26 final size:26
Alignment explanation
Indices: 20098401--20098453 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20098391 GTTGACTTAG
* *
20098401 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20098427 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20098453 G
1 G
20098454 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20098632 original size:883 final size:890
Alignment explanation
Indices: 20095758--20099344 Score: 4757
Period size: 898 Copynumber: 4.0 Consensus size: 890
20095748 GAGTTTAGTA
* * * *
20095758 CCAGTCTAAGATCAGACCAGACCGACGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGTT
1 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * * * * *
20095823 GCCGCATTTTTCTTCGCCAGGGCATCACCGTCGGAGCATTG-CTGGAGAACCTGACCGACAACGG
66 GCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTAACCGACGAC-A
* * *
20095887 TAGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTA
129 TTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTA
*
20095952 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
193 CTTGGCCCTTATATTGG--CCC--TCCCTCATC--ACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
20096017 ATTTGAGATGTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTGTTC
252 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
20096082 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTG-ATTTTTTTTGTGCATGACAACAAA
317 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTTATGCATGACAACAAA
* *
20096146 AATACAAGGACCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
382 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATC
* *
20096211 TCAAACCGCAAAGAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
446 CCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
20096276 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAGATGGCATTGGCATGCATG-
511 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-GA
* * * * **
20096340 AATATAAAGATATGCCTAAACCCACCTACCACCATATCAATCCACAACTTGCGCATCCCGTCTCT
575 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
20096405 CTGGCCGACATAGTGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
640 CTGGCCGGCGTCGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATT
* * * * * ** *
20096470 CCCAGTCTAAGATTATACCGGATCAAGGCTTATGGCAGTAGGATCGGTAGCATGCAAAAGGGGAC
705 CCCAGTCTAAGATCAAACAGGATCGAGGGTTGCGGCAGTAGGATCGGTAGCATGCAAAGGGGGAC
* * * *
20096535 CCGATCGAACCCCGGCTTGCTCATCTCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTTA
770 CCGATCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCA
**
20096600 TGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
835 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
20096656 CCAGTCTAAGATCGAACCAGACCGAGGTTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
1 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * **
20096721 GCCACATTTTTCTTCATCGGGGCACCATCATCGGAGCTTTGTCGAAGAACCTAACCGACGGTATT
66 GCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGACGACATT
* * * *
20096786 GGGGTTCCGACGATCGGGGGTATCGGGGGGGGTGTACACACATGATGTGCGATGGGCGCTGGTAC
131 GGGGTTCCGACGATCGGGGG--GCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAC
* *
20096851 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGGGAACTCACACCCCCTTAAAGAGCA
194 TTGGCCCTTATATTGG--CCC--TCCCTCATC--ACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
20096916 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCA
253 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
20096981 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT-TTTTTTATGCAT-ACCAACAAA
318 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTTATGCATGA-CAACAAA
* ** * *
20097044 AATACAAGGATCATGTCTAAAAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCC
382 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
** * * *
20097109 TGAACCGTAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
447 CAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
20097174 TGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAA
512 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
20097239 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCT
577 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
20097304 GGCCGGCGTCGTGCCCGCCCGCCCGCTCGCCCGCTAGTCTCGTCAGTTGGCTTAGGCATACGAAG
642 GGCCGGCGTCGTGCCCGCCCGCCCGCT------C-A-TTTCGTCGGTTGGCTTAGGCATACGAAG
* * * * *
20097369 TTCACTT-CTAATCTAAGATCAGATC-GGATCGAGGGTTGTGGTAGTAGGATCGGTAGCATGCAA
699 TTCA-TTCCCAGTCTAAGATCA-AACAGGATCGAGGGTTGCGGCAGTAGGATCGGTAGCATGCAA
* * * *
20097432 AGGGGGACCCGACCGATCCCCAGCTTGCTCATCCCGCCCCTCTGGCTGGCTGAGCGCCTGCACGC
762 AGGGGGACCCGATCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
20097497 TTGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTC
827 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
20097561 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATATGCTGGT
1 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* ** * * *
20097626 GCCACATTTTTCTTCACCGGGGCACTATCG-CCAAGCATCGCCAGAGAACCTGACCGACGACATT
66 GCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGACGACATT
* * * * * *
20097690 GAGGATCCAATGATCGGGGGGCCGGGGGGGTGTGCAAACATAATGTGCGATGGGTGCTGGTACTT
131 GGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
* *
20097755 GGCCCTTATATTTG-CC-CCCT-ATC-CCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGAT
196 GGCCCTTATATTGGCCCTCCCTCATCACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * *
20097816 TTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATCGGGACATTTTTTTCAAAAGGTCA
261 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
20097881 CAAAATCTTGTACACTTCAAGTTTTTAGCT-AATGTTTTTTATGCATGAGAACAAAAATACAAGG
326 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTTATGCATGACAACAAAAATACAAGG
* *
20097945 ATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATCCCAAACTGCA
391 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCA
20098009 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
456 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
20098074 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGATGAT
521 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* *
20098139 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGTCTCTCTGGCCGGCGT
586 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * *
20098204 CGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
651 CGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
* *** * * *
20098269 ATCAAACAGGA-CTGAGGGTTGCAGCAGTAGGATCAACACCACGCAGAGGGGGACCC-AGTCGAT
716 ATCAAACAGGATC-GAGGGTTGCGGCAGTAGGATCGGTAGCATGCAAAGGGGGACCCGA-TCGAT
* * * * * *
20098332 CCCCGGCTTGCACATCCCACCCCACTGGCCGGCTGAGCGCCCACGCGCTCGTTTCATCGGTTGAC
779 CCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
* *
20098397 TTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGAAGTTCATTC
844 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
20098444 CCAGTCTAAGATCGGACCAAACTGAGGGTTACGGTAGCACATGCTGGGCT-GGGCATGTGCTGGT
1 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* *** * * *
20098508 GCCATA-TTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAATCGGCGGCATT
66 GCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGACGACATT
* * * * ** * *
20098572 CGGGTTCTGACGATCGGACGGGCCGAGGGGGTGTGCGTAGATGATGTTCGATGGGTGCTGGTACT
131 GGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACT
*
20098637 TGGCCCATATATTGGCCCCCTATCCCTCATCAAAACCTCGAGAACTCACACCCCCCTTAAAGAGC
195 TGGCCCTTATATTGG--CCC--TCCCTCATC---ACCTCGAGAACTCACA-CCCCCTTAAAGAGC
*
20098702 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
252 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
20098767 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-GTTTTTTATGCATGCCAACAAA
317 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTTATGCATGACAACAAA
* *
20098831 AATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCC
382 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
20098896 CGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
447 CAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
20098961 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGCAAAAA
512 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * *
20099026 TATGAAGATGTGCCTAATCCCACCAACCACCTTATCGATCCACGGCTTGCGCATCCCATCTCTCT
577 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
20099091 GGCCGGCAAAGTACCCGCCCGCCCGCCCTCCCGTTCATTTCGTCGGTTGGCTTAGGCATCCAAAG
642 GGCCGGC---GT---CG--TGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAG
** * * * * * * *
20099156 TTCATTCCCAGTCTAAGATTTGACCA-GACCGAGGGTTGCGGCAGCAAGATTGGTAGCATGTAGA
699 TTCATTCCCAGTCTAAGA-TCAAACAGGATCGAGGGTTGCGGCAGTAGGATCGGTAGCATGCAAA
** * *
20099220 GGGGGACCCGATCGATCGTCGACTTGCTCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCT
763 GGGGGACCCGATCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
20099285 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCTAGTCTAAGCATACGGAGTTCA
828 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
20099345 GTCTAAGATT
Statistics
Matches: 2355, Mismatches: 285, Indels: 92
0.86 0.10 0.03
Matches are distributed among these distances:
881 19 0.01
882 60 0.03
883 278 0.12
885 1 0.00
886 2 0.00
889 4 0.00
890 3 0.00
891 217 0.09
892 191 0.08
893 1 0.00
894 15 0.01
895 187 0.08
896 206 0.09
897 224 0.10
898 369 0.16
899 7 0.00
902 54 0.02
903 1 0.00
904 230 0.10
905 283 0.12
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGACGACATT
GGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCTCCCTCATCACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTTATGCATGACAACAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCA
AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
CGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
ATCAAACAGGATCGAGGGTTGCGGCAGTAGGATCGGTAGCATGCAAAGGGGGACCCGATCGATCC
CCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
Found at i:20099406 original size:179 final size:179
Alignment explanation
Indices: 20099164--20099523 Score: 499
Period size: 179 Copynumber: 2.0 Consensus size: 179
20099154 AGTTCATTCC
* * *
20099164 CAGTCTAAGATTTGACCAGACCGAGGGTTGCGGCAGCAAGATTGGTAGCATGTAGAGGGGGACCC
1 CAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCATGCAGAGGGGGACCC
* ** * * *
20099229 GATCGATCGTC-GACTTGCTCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGT
66 GACCGATCCCCAG-CTTGCTCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCATTTCAT
* * *
20099293 GGGTTGACTTAGGCATACGGAGTTCATTTCTAGTCTAAGCATACGGAGTT
130 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
20099343 CAGTCTAAGATTAGATCGGACCGAGGGTTGTGGTAGC-AGAATCGGTAGCATGCAGATGGGGACC
1 CAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAAG-ATCGGTAGCATGCAGAGGGGGACC
* * *
20099407 TGACCGATCCCCAGCTTGCTCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCAT
65 CGACCGATCCCCAGCTTGCTCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCATTTCAT
*
20099472 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTT
130 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTT
20099522 CA
1 CA
20099524 TTCCCAATCT
Statistics
Matches: 158, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
178 2 0.01
179 155 0.98
180 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (179 bp):
CAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCATGCAGAGGGGGACCC
GACCGATCCCCAGCTTGCTCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCATTTCATG
GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTT
Found at i:20099514 original size:26 final size:26
Alignment explanation
Indices: 20099484--20099536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20099474 GTTGACTTAG
*
20099484 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
20099510 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20099536 G
1 G
20099537 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:20100411 original size:26 final size:26
Alignment explanation
Indices: 20100375--20100427 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20100365 GTTGATTTAG
20100375 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20100401 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20100427 G
1 G
20100428 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20101080 original size:896 final size:898
Alignment explanation
Indices: 20099343--20102943 Score: 4877
Period size: 896 Copynumber: 4.0 Consensus size: 898
20099333 ATACGGAGTT
** * * * * * * ** * *
20099343 CAGTCTAAGATTAGATCGGACCGAGGGTTGTGGTAGCAGAATCGGTAGCATGCAGATGGGGACCT
1 CAGTCTAAGATCGGACCAGACCGAGGGTTG-AGTAGAAGGATCGGCAGCACACAGAGGGGGACCC
* * * * *
20099408 GACCGATCCCCAGCTTGCTCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATG
65 GACCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTG
* *
20099473 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGA
130 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
*
20099538 TCGGACCAAACCGAGGGTTGCGACAGCACATGCTGGGCT-AGGCATGTGCTAGTG-C-CATTTTT
195 TCGGACCAAACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT
* * * ** *
20099600 CTTCGCCGGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGACC-AGCGGCATTGGGGTTTCGA
260 CTTCACCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGA
**
20099664 CGATC-GGGCAGGCCGGGGGGGTGTGCGCACA-GATGTGCGATGGGTGCTGGTACTTGGCCCTTA
324 CGATCAGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
20099727 TATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
389 TATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
20099792 TACAGGTTTGCTGCCCGTAGCCTTTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACA
453 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
20099857 AAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAA-AGAAAATACAAGGAT
518 AAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGAT
** *
20099921 CACGTCTACCAAGTTTGCGATGAAAACTCTTTCTGAAAAATTTTTAAAAAATCCCGAACCGTAAA
582 CACGTCTACCAAGTTTGCGACCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAA
20099986 AA-TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
647 AAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
** * * **
20100050 AAGGGACTGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAAATGT
712 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATAC
* * * * *
20100115 GCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTTTGG-CGGACGAA
777 ACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-CGTA
20100179 GTGCCCG-CC-C-GCCCGCTCATTTCATCGGTTGGATTAGGCATACGGAGTTCATTCC
841 GTGCCCGCCCTCTGCCCGCTCATTTCATCGGTTGGATTAGGCATACGGAGTTCATTCC
* * * * *
20100234 CAGTCTAAGATTGGA-CAGGACCAAGGGTTGTAGCAGAAGGATCGACAGCACACAGAGGGGGAAC
1 CAGTCTAAGATCGGACCA-GACCGAGGGTTG-AGTAGAAGGATCGGCAGCACACAGAGGGGGACC
* * *
20100298 CGATCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGACTGAACACCCGCACGCTCGTTTCGT
64 CGACCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGT
* *
20100363 GGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
129 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
** * * * *
20100428 ATCGGACCGGACCGAGGGTTACGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
194 ATCGGACCAAACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTT
* * *
20100493 TCTTCACCGAGGCACCATCGCCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGCGGTTCCGG
259 TCTTCACCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
*
20100558 CGATC-GGGGGGGCCGGGGGGGATGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
324 CGATCAGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
20100622 ATATTGGGCCCCTATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
388 ATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
20100687 TTCCAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
452 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
20100752 AAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAA-AGAAAATACAAGGA
517 AAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGA
** *
20100816 TCACGTCTACCAAGTTTGCGATGAAAACTCTTTCTGAAAAATTTTTAAAAAATCCCGAACCGTAA
581 TCACGTCTACCAAGTTTGCGACCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
20100881 AAA-TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
646 AAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
20100945 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATA
711 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATA
20101010 CACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
776 CACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * ** *
20101075 GTGCCCGCCCACCCGTTCGCCCGTTTGTTTCATCGGTTGGCA-TAGGCATACAGAGTTCATTCC
841 GTGCCCG-CC-CTC--T-GCCCGCTCATTTCATCGGTTGG-ATTAGGCATACGGAGTTCATTCC
* *
20101138 CAGTCTAAGATCGGACCAGACTGAGGGTT-ACGGTA-ATAGGATCGGCAGCACGCAGCA-GGGGA
1 CAGTCTAAGATCGGACCAGACCGAGGGTTGA--GTAGA-AGGATCGGCAGCACACAG-AGGGGGA
* * * * **
20101200 CCCGACCTATCCCTGGTTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTC
62 CCCGACCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTC
* *
20101265 GTGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A---T-
127 GTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *** * *
20101313 ---T-GG-----ACTGAGGGTTGCAACAATGCATGCTGGGCTCAGGCATATGCTGATGCCGCATT
192 AGATCGGACCAAACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATT
** *
20101369 TTTCTTTGCCG-GTGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTC
257 TTTCTTCACCGAG-GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
** *
20101433 CGGTGATCAGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
321 CGACGATCAGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
20101498 TTCTATTGGCCCCTATCCCTCATCAAACCTCAAGAACTGACA-CCCCTTAAAGAGCATTTGAGAT
386 TTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * * *
20101562 TTTACAAGTTTTCTGCCAGTAGCAATTAAAATGTCTGATATGGGGACACTTTTTTCAAATGGTCA
451 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
20101627 CAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
516 CAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
20101692 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTTAA
581 TCACGTCTACCAAGTTTGCGACCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
20101757 AAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
646 AAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
20101822 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAGGATG
711 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATA
** * ** ** *
20101887 TTCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGTAGGTGTA
776 CACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
** *
20101952 GTGCCCGTCCACCCGTCTGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
841 GTGCCCG----CCC-TCTGCCCGCTCATTTCATCGGTTGGATTAGGCATACGGAGTTCATTCC
* * * * * * * *
20102015 TAATCTAAGATCGGACCAGATCGAGGGTTGCGTTAGTAGGATCGGTAGCA-AGTAGAGGTGG-CC
1 CAGTCTAAGATCGGACCAGACCGAGGGTTGAG-TAGAAGGATCGGCAGCACA-CAGAGGGGGACC
* **
20102078 CGGCCGATCCTTGGCTTG-TGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCG
64 CGACCGATCCCCGGCTTGCT-CATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCG
* *
20102142 TGGGTTGACTTAGGCATACAAAGTTCATTCCC-GTCTAAGCATACGGAGTTCATTGCCAGTCTAA
128 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *
20102206 GATCGGACCAAACCGAGGGATGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
193 GATCGGACCAAACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTT
* * ** *
20102271 TTCTTCATCGAGGCACCATCGCCGGAGCATCGTCGGAGGGCCTGACCGATGGCATTGGGGTTCCG
258 TTCTTCACCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * *
20102336 ACGATCGGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGGTACTTGGCCATT
323 ACGATCAGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
** * *
20102400 ATATTGGCCCCCTATTTCTCATCAAACCTTGAGAACTCAGACCCCCTTAAAGAGCATTTGAGATT
388 ATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
20102465 TTACAGCTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCAC
452 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
20102530 GAAATCTTGT--ACTTTGAGTTTTTAGCTGCATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
517 AAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * **
20102593 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCTAGAACCGTAA
582 CACGTCTACCAAGTTTGCGACCAAAACT-CTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
* * * *
20102657 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCACGTGAAGGTT
646 AAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
20102722 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATA
711 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATA
20102787 CACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTA
776 CACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* ** * * *
20102851 GTGTCCGCCCGCCTGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCC
841 GTG-CC-CGC-CCT--CTGCCCGCTCATTTCATCGGTTGGATTAGGCATACGGAGTTCATTCC
20102914 CAGTCTAAGATCGGACCAGACCGAGGGTTG
1 CAGTCTAAGATCGGACCAGACCGAGGGTTG
20102944 CGGCAGCACA
Statistics
Matches: 2404, Mismatches: 233, Indels: 138
0.87 0.08 0.05
Matches are distributed among these distances:
875 7 0.00
876 291 0.12
877 303 0.13
878 153 0.06
879 17 0.01
880 3 0.00
883 2 0.00
884 1 0.00
888 2 0.00
890 1 0.00
891 203 0.08
892 13 0.01
893 1 0.00
894 79 0.03
895 11 0.00
896 465 0.19
897 11 0.00
898 3 0.00
899 80 0.03
900 335 0.14
901 144 0.06
902 93 0.04
903 3 0.00
904 179 0.07
905 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
CAGTCTAAGATCGGACCAGACCGAGGGTTGAGTAGAAGGATCGGCAGCACACAGAGGGGGACCCG
ACCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACCAAACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTC
TTCACCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
ATCAGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
TCTACCAAGTTTGCGACCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATACACCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
CGCCCTCTGCCCGCTCATTTCATCGGTTGGATTAGGCATACGGAGTTCATTCC
Found at i:20103556 original size:715 final size:708
Alignment explanation
Indices: 20102180--20103637 Score: 2170
Period size: 715 Copynumber: 2.0 Consensus size: 708
20102170 TCCCGTCTAA
* *
20102180 GCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAAACCGAGGGATGCGGCAGCACATGCTGGG
1 GCATACGGAGTTTATTACCAGTCTAAGATCGGACCAAACCGAGGGATGCGGCAGCACATGCTGGG
* *
20102245 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCGTCGGAGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGACCATCGTCGGAGA
* * * * *
20102310 GCCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGAAC-GGGAGGGCCGGGGGGTGTGCGCACATGATGTA
* ** *
20102375 CGATGGGTGGTGGTACTTGGCCATTATATTGGCCCCCTATTTCTCATCAAACCTTGAGAACTCAG
195 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAG
* *
20102440 ACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 AACCCCTTAAAGAGCATTTGAGATTTTACAGCTTTACTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * * * *
20102505 GGGGACACTTTTTTCAAATGGCCACGAAATCTTGTACTTTGAGTTTTTAGCTGCATTTTTTTGTG
325 GGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACTTCGAGTTTTTAGCTGAATATTTTTATG
* *
20102570 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
390 CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
20102635 TTTAAAAAATCTAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCCTGC
455 TTTAAAAAATCCAGAACCGCAAAAAGTTTAGAAAATCGTGAAAAATAGAAAACGAGTCATCCTGC
*
20102700 CATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
20102765 GGCATGCAGAAATATGAAGATACACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
585 GGAATGCAGAAATATGAAGATACACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * ** *
20102830 TCCCGTCTCTCT-GCCGGCGTAGTGTCCGCCCGCCTGCCTGCCCGCTTGTTTCGTCGGTTGGCTT
650 TCCCATCTCTCTGGCCGACATA--GT--GCCC-AC--CC-ACCCGCTCATTTCATCGGTTGGCTT
20102894 AG
707 AG
* * *
20102896 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTTATTACCAGTCTAAGATCGGACCAAACCGAGGGATGCGGCAGCACATGCTGGG
* * ** *
20102961 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTGCCATCGTCGGACCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGACCATCGTCGGAGA
* *
20103026 ACCTGACCGGCGGCATTGGGGTTCCGGCGAAC-GGAGGGCCGGGGGGGTGTGCGCACATGATGTA
131 ACCTGACCGACGGCATTGGGGTTCCGACGAACGGGAGGGCC-GGGGGGTGTGCGCACATGATGTA
* * * *
20103090 CGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATTAAATCTCGAGAACTCA-
195 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAG
* * * *
20103154 AACCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTC-AAAAT
260 AACCCCTTAAAGAGCATTTGAGATTTTACAGCTTTACTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
20103218 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTA
325 GGGGACACTTTTTTCAAATGGCCACAAAATCTTGT--ACTTCGAGTTTTTAGCTGAATATTTTTA
*
20103283 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGTCCAAATA-TCCTTCCGAAAA
388 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAA-ACTCCTTCCGAAAA
* * * * *
20103347 AATTTTAAAAAATCCCGAACCGCAGAAAGTTTAGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
452 AATTTTAAAAAATCCAGAACCGCAAAAAGTTTAGAAAATCGTGAAAAATAGAAAACGAGTCATCC
*
20103412 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
***
20103477 ATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGAATGCAGAAATATGAAGATACACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
20103542 GCATCCCATCTCTCTGGCCGACATAGTGCCCACCCACCCGCTCATTTCATCGGTTGGCTTAG
647 GCATCCCATCTCTCTGGCCGACATAGTGCCCACCCACCCGCTCATTTCATCGGTTGGCTTAG
* *
20103604 GCATACGGAGTTTATTACAAGTCTAAGATTGGAC
1 GCATACGGAGTTTATTACCAGTCTAAGATCGGAC
20103638 TGGACTGAAG
Statistics
Matches: 671, Mismatches: 66, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
708 54 0.08
709 2 0.00
711 1 0.00
712 4 0.01
713 37 0.06
714 63 0.09
715 356 0.53
716 154 0.23
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (708 bp):
GCATACGGAGTTTATTACCAGTCTAAGATCGGACCAAACCGAGGGATGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGACCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGAACGGGAGGGCCGGGGGGTGTGCGCACATGATGTAC
GATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGA
ACCCCTTAAAGAGCATTTGAGATTTTACAGCTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATG
GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACTTCGAGTTTTTAGCTGAATATTTTTATGC
ATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCAGAACCGCAAAAAGTTTAGAAAATCGTGAAAAATAGAAAACGAGTCATCCTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GAATGCAGAAATATGAAGATACACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCATCTCTCTGGCCGACATAGTGCCCACCCACCCGCTCATTTCATCGGTTGGCTTAG
Found at i:20103800 original size:26 final size:26
Alignment explanation
Indices: 20103763--20103815 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20103753 GTTGACTTAG
20103763 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20103789 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
20103815 G
1 G
20103816 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20105162 original size:715 final size:717
Alignment explanation
Indices: 20103789--20105277 Score: 2344
Period size: 715 Copynumber: 2.1 Consensus size: 717
20103779 CCCAGTCTAA
* * *
20103789 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
20103854 CTCGGGCATGTGCTAGGGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTAGGGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCATCGGAGA
* * *
20103919 ACCTGATAGGCGGCATTGGGGTTCTGGCGATCGGAAGGGCCGGGGGGTGTGCGCACATGATGCGC
131 ACCTGACAGGCGGCATTGGGGTTCTGGCGAACGG-AGGGCCGGGGGGTGTGCGCACATGATGCAC
* * *
20103984 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACTTCTACAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGACAACTCAAA
20104049 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCACTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCACTAAAGTGTCTGAAATG
20104114 GGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTTAT
325 GGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTTAT
* ** * * *
20104179 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGAAAGAA
390 GCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGCAGCCAAAACTCCTTCCGAAAAAA
*
20104244 TTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
20104309 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
20104374 TGGCATGCAGAAATATGAAGATACACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
585 TGGAATGCAGAAATATGAAGATACACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * ** * *
20104439 ATCCCGTCTCTCTGGTCGACGTAGTGTCTGCCCGCCTGCCTGCCCGCTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCCACCTGCCCGCTCATTTCATCGGTTGGCT
20104504 TAG
715 TAG
* * * *
20104507 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
** ** * *
20104572 CTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGTGCCATCGTCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTAGG-GCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCATCGGAG
* *
20104636 AACCTGACCGGCGGCATTGGGGTTCTGGCGAACGG-GGGCCGGGGGGGTGTGCGCACATGATGTA
130 AACCTGACAGGCGGCATTGGGGTTCTGGCGAACGGAGGGCC-GGGGGGTGTGCGCACATGATGCA
* * *
20104700 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATTAAACCTCGAGAACTCAA
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGACAACTCAA
* * * *
20104765 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTG-AAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCACTAAAGTGTCTGAAAT
*
20104829 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTT-TT
324 GGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTCTT
*
20104892 GTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGCAGCCAAATA-TCCTTCCGAAA
388 ATGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGCAGCCAAA-ACTCCTTCCGAAA
** * *
20104956 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCGTGAAAAATAGAAAATGAGTCGT
452 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGT
*
20105020 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** *
20105085 GCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGAATGCAGAAATATGAAGATACACCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * *
20105150 GCGCATCCCGTCTCTTTGGTCGGCATAGTGCCCGCCCGCCCACCTGCTCGCTCATTTCATCGGTT
646 GCGCATCCCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCCACCTGCCCGCTCATTTCATCGGTT
20105215 GGCTTAG
711 GGCTTAG
* *
20105222 GCATACGGAGTTCATTCCCAATCTAAAATCAGACCGGACCGAGGGTTGCGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCA
20105278 GGATCGACAG
Statistics
Matches: 703, Mismatches: 63, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
714 1 0.00
715 406 0.58
716 12 0.02
717 139 0.20
718 145 0.21
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTAGGGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCATCGGAGA
ACCTGACAGGCGGCATTGGGGTTCTGGCGAACGGAGGGCCGGGGGGTGTGCGCACATGATGCACG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGACAACTCAAAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCACTAAAGTGTCTGAAATGG
GGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTTATG
CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGCAGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGAATGCAGAAATATGAAGATACACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
TCCCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCCACCTGCCCGCTCATTTCATCGGTTGGCTT
AG
Found at i:20105431 original size:26 final size:26
Alignment explanation
Indices: 20105381--20105433 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20105371 GTTGACTTAG
* *
20105381 GCATACAGAGTTCATTTCTAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
20105407 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20105433 G
1 G
20105434 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20106317 original size:26 final size:26
Alignment explanation
Indices: 20106287--20106339 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20106277 GTTGACTTAG
*
20106287 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20106313 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20106339 G
1 G
20106340 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20106526 original size:906 final size:902
Alignment explanation
Indices: 20104507--20112385 Score: 10575
Period size: 867 Copynumber: 8.9 Consensus size: 902
20104497 GTTGGCTTAG
* *
20104507 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
20104572 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTGCCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * *
20104637 ACCTGACCGGCGGCATTGGGGTTCTGGCGAAC--GGGGGCCGGGGGGGTGTGCGCACATGATGTA
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTG
* * *
20104700 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATTAAACCTCGAGAACTCAA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
20104765 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTG-AAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
20104829 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
20104893 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGCAGCCAAATA-TCCTTCCGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-ACTCCTTCCGAAAA
* * *
20104957 AATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCGTGAAAAATAGAAAATGAGTCGTC
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTC
*
20105021 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* **
20105086 CATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** * * *
20105151 CGCATCCCGTCTCTTTGGTCGGCATAGTGCCCGCCCGCCCACCTGCTCGCTCATTTCATCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCG-TCGCTCGTTTCGTCGGTTG
* * * *
20105216 GCTTAGGCATACGGAGTTCATTCCCAATCTAAAATCAGACCGGACCGAGGGTTGCGGTAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * * * *
20105281 TCGACAGCACACAGAGTGGGACCCAACCGATCCCCGGCATGTGCATCCCGCCCCTCTGGCCGACT
777 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
20105346 GAGCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACAGAGTTCATTTCTAATCTAA
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *** * *
20105407 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGCTACGATTGCATATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * **
20105472 CTTGGGCATGTCCTGGTGCCATATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * ** ** *
20105537 ACCTGACCGGCGGCATTAGGATTCCAGCGAT-TAGGGGGCCGGGGGGGTGTGCACACGTGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTG
** *
20105601 CGATGGGTGCTGGTACTTGGCATTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
20105666 ATCCCCTTAACGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGGGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
20105731 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
20105796 TGCGTGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
20105861 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
20105926 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCAT-AAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
20105990 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCG
585 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
20106055 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCTGCCCGTCCGCTCGTTTTGTCAGT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCTGCCCGT-CGCTCGTTTCGTCGGT
* * * ** * *
20106120 TGGCTTAGGCATACAGTGTTCATTCCCAGTCTAAGATCAGAACAGATAGAGGGTTGCGGGAACAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
* * * * * ** * * *
20106185 GATCGGTAGCACGTAAAGGGGGACCAGGCCGATCCCTAGCTTGCACATCCTGCCCCTCTGGTCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
20106250 CTGAGC-CCCGGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
20106313 GCATACGGAGTTCATTCCTAATCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
20106378 CTCGGGCATGTGCTGGCGCAGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * *
20106443 ACCTAACTGGAGGCATTGGGGTTCTGGCGATTGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
*** * *
20106508 GATGGGTGCTGGTACTTGGAATTTATATTGGCCCCCTATCGCTCATCAAA-CTCTAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
20106572 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGGGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
20106637 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
20106702 GCACGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
20106767 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTAGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
20106832 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
20106897 TGACACACAGAAATATAAAGATGTGCTTGAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
20106962 ATCCCGTCTCTCTGGCCGGCGTAGTGCTCG--C-CC-GCCCGT-G--CATTTCGTCGGTTAGCTT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGTCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
20107020 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTACGGTAGCAGGATCGA
716 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
* ** * *
20107085 TAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGC
781 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
20107150 GCCCGCACGCTCG-TTCGTGGGTTGACTTAGGCATACGGAG----TT--CA---T--
846 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
20107195 ---T-C------C--T---AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
20107245 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * *
20107310 ACCTGACCGGCCGG-ATTGTGGTCCTGGCGATCAGGGGGGCCGTGGGGG-GTGCACACATGATGT
131 ACCTGACCGG-CGGCATTGGGGTTCTGGCGATCGGGGGGGCCG-GGGGGTGTGCACACATGATGT
*
20107373 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
20107438 CA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
20107502 TGTGGTCACTTTTTTCAAATGGTCACACAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
20107567 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACGCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
20107632 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
20107697 TGCCATGAAAGTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
20107762 ATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
20107827 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCTGCTCGTTTCGTCGATTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGTC-GCTCGTTTCGTCGGTTGG
* * * ** *
20107892 CTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGATCAGATTGAGGGTTGCGGTAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* *** * *
20107957 CGGCAGCAAGCAGAGGGGGACCCGGTTGATCCCCGGCTTACGCATCCCTCCCCTCTGGCCGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
20108022 AGCGCCCACACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
20108082 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACAGAGGTTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
20108147 CTCGGGCATGTGCTGGTGCCGCA-TTTTCTTCGCCGCGGCACCA---TC---G--TCG---GAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * *
20108200 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-----AG--GGGGGGTGTGCCCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
* *
20108258 GGTGGGTGCTGGTACTAGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 GATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
20108323 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
20108388 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
20108453 CGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAG
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
20108518 ATTTAAAAAAATCCCGAACCGC-AAAATTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
20108582 GCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
20108647 ATGGCACCCAAAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
20108712 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-G-CC-T-GCTCGTTTCGTCGGTTGGCT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGTCGCTCGTTTCGTCGGTTGGCT
* * ** * * * *
20108770 TAGGCATACGGAGTTCATTCCTAGCCTAAGATTGGACCGGACCGAGGGTTGTGGCAGTAGGATTG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * * * *
20108835 GTAGCA-GACAGAGAGGGACCCGACTGATCCCCGACTTACACATCCCACCCCTCTGGCCTGCTGA
780 GCAGCACG-CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * * * *
20108899 GCGCCCGCGCGTTCCTTTCATGGGTGGACTCAGGCATTCGGAGTTTATTCCCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
20108958 GCATACGGAGTTCATTTCCAGTCTAAGATCGAACCAAACCGAGGGTTACGGCAGCACA---T--G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
20109018 CT---G---GTGC---T---GCATTTTTCTTCGTCGGGGCACCA---TC---G--T---CAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * * *
20109060 ACCCGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGACCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
* *
20109125 TATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
20109190 CCCCCTTAGAGGGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
20109255 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
20109320 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** *
20109385 TTTTAAAAAATCCCGAACCATAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
20109450 CCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
20109515 TGGCACAC-GAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
586 TGGCACACAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** *
20109579 CATCCCGTCCCTCTGGCCAACGTAGTGCCTG--C-CC-G-CC--CGCTCGTTTCGTCGGTTGGCT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGTCGCTCGTTTCGTCGGTTGGCT
** * * *
20109637 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCAGCAGCAGGATTG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
20109702 GTAGCA-GACGGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGA
780 GCAGCACG-CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
** * * * *
20109766 GCGCCCGCGTGTTCCTTTCGTGGGTGGACTTAGGCATTCGGAGTTCATTCCCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
20109825 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACTGACGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
20109890 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---GC--CG--A-AGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * * *
20109944 ACCCGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGACCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
* *
20110009 TG-TGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 -GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
20110073 ACCCCCTTAAAGGGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
20110138 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTAGAGTTTTTAGTTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
20110203 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** * *
20110268 ATTTTAAAAAATCTCGAATCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
20110333 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * ***
20110398 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAATGGCCCTATCGATCCACGGCTTGCG
585 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
20110463 CATCCCGTCTCTCTGGCCGGCATAGTGCGCGCCCGCCTGCCCGCCCACTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCG-TCGCTCGTTTCGTCGGTTGGC
* * * *
20110528 TTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACC-GAATCGAGGGTTACAGCAGCAGGAT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGAT
* * * **
20110592 CGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
20110657 AGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCGTACGGAGTTCATTCCTAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
20110717 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
20110782 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * * ** * * *
20110847 ACCTGACCGGTGGCATTAGGGTTTTCGTAATCAGGGGGGCCTGGGGCGG-GTGTAAGCGCATGAT
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGG-GGTGTG-CA-CACATGAT
* **
20110911 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATGTCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * *
20110976 CACATCCCCTTAAAAAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGG
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
20111041 AATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
20111106 TTGTGCATGCCAACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
20111171 AAAATTTTAAAAACTCCTGAACCGGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
20111236 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
20111301 GCATTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
582 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
20111366 GCGCATCCCGTCCCTCTGGCCGGCGTAGT----TCCCGCCTACCCGGTCGCTCGTTTCGTCGATT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCC-GTCGCTCGTTTCGTCGGTT
*
20111427 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * * * * * *
20111492 ATCGGCAGCACGTAGAGGGGGACTCGGCCGATCCCCAGCTTGTGCATCTCGCCCCTATGGCCGAC
776 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
20111557 TGAGCGACCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
20111619 GCATACTGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCGGCAGCACATGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT-GG
** * * * *
20111684 GCTCGGGCATGTTATGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCTTC-CCGAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC-AGA
* * *
20111748 GAACCTGACCGACGGCATTGGGGTT-TCGACGATCGAGGGGGCCGGGGGGTGTGCACACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCT-GGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATG
*
20111812 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
20111877 ACACACCCTTAAAGAGCATTTGAGATTTTACTAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-GA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
20111941 AATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGATTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
20112006 TTGTGCATGCCAACAAAAACACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCTTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** *
20112071 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAGAATCATGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
20112136 TTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * * *
20112201 GCATTGGCATGCAGAAATATGAAGATGTACCTAAACACACCTACCACCCTATCGATCCTCAGCTT
582 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
20112266 GTGCACCCCGTCTCTCTAGCCGGCGTAGTGCCCG--C-CC-G-CC--CGCTCGTTTCGTCGGTTG
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGTCGCTCGTTTCGTCGGTTG
* *
20112324 GCTTAGGCATTCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
20112386 CATGCTGGGC
Statistics
Matches: 6205, Mismatches: 644, Indels: 264
0.87 0.09 0.04
Matches are distributed among these distances:
859 3 0.00
860 55 0.01
862 1 0.00
865 4 0.00
866 251 0.04
867 1055 0.17
868 20 0.00
869 1 0.00
870 4 0.00
871 8 0.00
872 4 0.00
873 2 0.00
875 146 0.02
876 250 0.04
878 5 0.00
879 3 0.00
880 3 0.00
881 3 0.00
882 8 0.00
883 32 0.01
884 781 0.13
885 204 0.03
886 1 0.00
887 4 0.00
888 1 0.00
889 7 0.00
890 29 0.00
891 2 0.00
892 282 0.05
893 29 0.00
894 130 0.02
895 6 0.00
896 79 0.01
897 1 0.00
898 10 0.00
899 5 0.00
900 563 0.09
901 195 0.03
902 422 0.07
903 351 0.06
904 7 0.00
905 314 0.05
906 917 0.15
907 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGTCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20108085 original size:26 final size:26
Alignment explanation
Indices: 20108056--20108108 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20108046 GTTGACTTAG
20108056 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20108082 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20108108 G
1 G
20108109 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20108694 original size:884 final size:884
Alignment explanation
Indices: 20107180--20118390 Score: 9694
Period size: 884 Copynumber: 12.6 Consensus size: 884
20107170 GTTGACTTAG
* * *
20107180 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
20107245 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAG-AAC--C--TG-
* * *
20107310 ACCTGACCGGCCGGATTGTGG-TCCTGGCGATCAGGGGGGCCGTGGGGGGTGCACACATGATGTG
125 ACC-GA-CGG-C--ATTGGGGTTCC-GACGATCAGGGGGG--GT-----GTGCGCACATGATGTG
*
20107374 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
177 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
20107439 A-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
242 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
20107503 GTGGTCACTTTTTTCAAATGGTCACACAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTG
307 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
20107568 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACGCCTTCCAAAAAA
372 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
*
20107633 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
437 ATTTTAAAAAATCCCGAACCGC-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
20107698 GCCATGAAAGTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
501 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
20107763 TTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
566 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
20107828 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCTGCTCGTTTCGTCGATTGGC
631 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * ** *
20107893 TTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGATCAGATTGAGGGTTGCGGTAGCAGGATC
696 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * *
20107958 GGCAGCAAGCAGAGGGGGACCCGGTTGATCCCCGGCTTACGCATCCCTCCCCTCTGGCCGGCTGA
761 GGCAGCAAGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGA
* *
20108023 GCGCCCACACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
826 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
20108082 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACAGAGGTTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** *
20108147 CTCGGGCATGTGCTGGTGCCGCA-TTTTCTTCGCCGCGGCACCATCGTCGGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGAC
* * * *
20108211 GGCATTGGGGTTCCGGCGATCAGGGGGGGTGTGCCCACATGATGTGCGGTGGGTGCTGGTACTAG
131 GGCATTGGGGTTCCGACGATCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT-T
20108276 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
195 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
20108341 TGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
260 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
20108406 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAATA
325 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
20108471 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAGATTTAAAAAAATCCCGAA
390 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAA
* * *
20108536 CCGCAAAATTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
455 CCGCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * * *
20108601 AGGTTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAATGGCACCCAAAAATATGA
520 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
*
20108666 AGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
585 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
20108731 GCGTAGTGCCCGCCCGCCT--------GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
650 ACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** * * * * * *
20108788 TCCTAGCCTAAGATTGGACCGGACCGAGGGTTGTGGCAGTAGGATTGGTAGC-AGACAGAGAGGG
715 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAAG-CAGAGGGGG
* * * * * * *
20108852 ACCCGA-CTGATCCCCGACTTACACATCCCACCCCTCTGGCCTGCTGAGCGCCCGCGCGTTCCTT
779 ACCCGATC-GATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * * *
20108916 TCATGGGTGGACTCAGGCATTCGGAGTTTATTCCCAGTCTAA
843 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
20108958 GCATACGGAGTTCATTTCCAGTCTAAGATC-GAACCAAACCGAGGGTTACGGCAGCACA---T--
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
20109017 GCT---G---GTGC---T---GCATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCCGACCGG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGA
* *
20109070 CGGCATTGGGGTTCCGACGATCGGGGGGACCGGGGGGTGTGCGCACATGATGTGCTATGGGTGCT
130 CGGCATTGGGGTTCCGACGATC------A-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
20109135 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAGA
188 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
20109200 GGGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
253 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
20109265 TTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
318 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
20109330 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAAAAATTTTAAAAA
383 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAAAAATTTTAAAAA
** *
20109394 ATCCCGAACCATAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
447 ATCCCGAACC-GCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
20109459 TTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC-
511 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
*
20109523 GAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTC
576 G-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
20109588 CCTCTGGCCAACGTAGT--------GCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
640 TCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * *
20109645 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCAGCAGCAGGATTGGTAGC-AG
705 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAAG
* * * *
20109709 ACGGAGGGGGACCCGA-CTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCCCG
770 -CAGAGGGGGACCCGATC-GATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
** * * * *
20109773 CGTGTTCCTTTCGTGGGTGGACTTAGGCATTCGGAGTTCATTCCCAGTCTAA
833 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
20109825 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACTGACGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
20109890 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGAACCCGACCGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGAC
*
20109955 GGCATTGGGGTTCCGACGATCGGGGGGACCGGGGGGTGTGCGCACATGATGTGCTG-TGGGTGCT
131 GGCATTGGGGTTCCGACGATC------A-GGGGGGGTGTGCGCACATGATGTGC-GATGGGTGCT
* *
20110019 GGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
188 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
20110084 GGGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
253 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
20110149 TTTCAAATGGTCACAAAATCTTGTACAATTAGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAT
318 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
20110214 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
383 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
* * * ** * *
20110279 TCTCGAATCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
448 TCCCGAACCGC-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
20110344 TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
512 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* ***
20110409 AAATATGAAGATGTGCCTAAACCCACCAATGGCCCTATCGATCCACGGCTTGCGCATCCCGTCTC
577 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
20110474 TCTGGCCGGCATAGTGCGCGCCCGCCTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACG
642 TCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * *
20110539 GAGTTCATTCTCAGTCTAAGATCAGACC-GAATCGAGGGTTACAGCAGCAGGATCGACAGCACA-
707 GAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCA-AG
*
20110602 CAGAGGGGGACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
770 CAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
20110667 CGCTCGTTTCGTAGGTTGACTTAGGCGTACGGAGTTCATTCCTAGTCTAA
835 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
20110717 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
20110782 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAG-A--ACCTG---
* * ** * ** *
20110847 ACCTGACCGGTGGCATTAGGGTTTTCGTAATCAGGGGGGCCTGGGGCGGGTGTAAGCGCATGATG
125 ACC-GA-C---GGCATT-GGGGTTCCG--A-C-----GATCAGGGG-GGGTGTGCGCACATGATG
* **
20110912 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATGTCTCATCAAACCTCGAGAACTC
175 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
20110977 ACATCCCCTTAAAAAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGA
240 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
20111042 ATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAATTTTTT
305 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
20111107 TGTGCATGCCAACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
370 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * *
20111172 AAATTTTAAAAACTCCTGAACCGGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
435 AAATTTTAAAAAATCCCGAACC-GCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
20111237 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
499 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
20111302 CATTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
564 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * ** *
20111367 CGCATCCCGTCCCTCTGGCCGGCGTAGT----TCCCGCCTACCCGGTCGCTCGTTTCGTCGATTG
629 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTG
*
20111428 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGA
694 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * ** * ** * * *
20111493 TCGGCAGCACGTAGAGGGGGACTCGGCCGATCCCCAGCTTGTGCATCTCGCCCCTATGGCCGACT
759 TCGGCAGCAAGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCT
* * * *
20111558 GAGCGACCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
824 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
20111619 GCATACTGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCGGCAGCACATGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT-GG
** *
20111684 GCTCGGGCATGTTATGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCTTCCCGAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT---C---G--T--CG-GAG
* *
20111749 AACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGTGTGCACACATGATGTG
119 AACCTGACCGACGGCATTGGGGTTCCGACGATC-A----G--GGGGGGTGTGCGCACATGATGTG
*
20111814 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
177 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
20111879 ACACCCTTAAAGAGCATTTGAGATTTTACTAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-GAAA
242 ACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
20111943 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGATTTTAGCTGAATTTTTTT
306 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
20112008 GTGCATGCCAACAAAAACACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAA
371 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAA
* ** * *
20112072 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAGAATCATGAAAAATAGAAAACGAGTCGTT
435 AAATTTTAAAAAATCCCGAACCGC-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
20112137 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
499 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
20112202 CATTGGCATGCAGAAATATGAAGATGTACCTAAACACACCTACCACCCTATCGATCCTCAGCTTG
564 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
20112267 TGCACCCCGTCTCTCTAGCCGGCGTAGT----G--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTG
629 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTG
* * *
20112324 GCTTAGGCATTCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCA-CA
694 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * ** ** *** *** * **
20112388 TGCTGGGC-TCAGGAATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCAC-CATCGTCGGAGAAC
759 T-C--GGCAGCAAGCA-GAGGGGGACCCG-ATCGATC--C-CCGGCTTACGCATC--C--CGCCC
* * * ** ** *** * ** ** * * *
20112451 CTGACCGG-CGGCATTAGGGTTTCGACAATCG-GGGGGGCCTGGGGCGGGTGTAAGCACA-TGAT
812 CT--CTGGCCGGC-TGAGCG-CCCG-C-A-CGCTCGTTTCGTGGGTTGACT-TAGGCATACGGA-
* * ** **
20112513 GTGCGATGGGTGCTGGTACTTG
868 GTTC-AT---TCCCAGT-CTAA
* **** * * ** * ** ****** ***
20112535 GCCCTTATATTGGCCCCCTATGCCTCA-TCAAACCTCGAGAACTCACATTCCCTTAAAG-AGC-C
1 G--C--ATA-CGGAGTTC-ATTCC-CAGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCAC
* *** **** * * * ** **
20112597 -T-TTGAAATTTTACAGATTTGCTACCAGTAG-C-CATTAAAGTGTCTAAAAT-GGGGACACTTT
58 ATGCTGGGCTCGGGC--ATGTGCT---GGT-GCCGCATT----TTTCT-TCATCGGGG-CACCAT
** ** * ** * * * *** * ***** * *
20112657 TTTC--A-AATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTAAATCTTTTTGTGCGTGC-
111 CGTCGGAGAA-CCTGAC-CGA-C--G-GCA-TTGGGGTTCCGA-C--GATCAGGGGGGGTGTGCG
* ** * * * * *** * *** * **
20112718 CAACA-AAAATAC-AAGGAT-C----ACATCTACC--A-AGTTGGTGCCAAAACTCCTTCCAAAA
166 C-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TTGG-CCCCCTA-TCCCT-C-ATC
** ** * ** * * * * *** * * *
20112773 AAATTTTAAAAACTC-C-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAAGGAGTCG
225 AAACCTCGAGAACTCACAC-CCCCTTAAAGAG---C----AT-TTG--AGATTTTACAGG-TTTG
* * * * * * * * *
20112836 TCTTGCCATGAAACTTCACGTGAAG-G-CT-TAA--GGGAC-CATTCTATGAACT--TACAGGCC
278 -C-TGCCA-GTAGC--CA-TTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGT-CA---C
*** * ** * * * ** ** ** * *
20112893 AAAAAAATG-GCA-TT-G-G--CAT-GCAGAAATATGATGAT--ATGCCTAAACCCACCTACCAC
332 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCC--AACAAAAATACAAG
** * * * * *** * * ****** ** ***** *
20112949 CCT-A--TCGATCCACGACTT-GTG-CATCCCGTCTCTCTGGGCGGCGTAGT--GCCCGCCCG-C
394 GATCACGTCTA-CCAAG-TTTGGGGCCAAAAC-TC-CTTTCGAAAAAATTTTAAAAAATCCCGAA
*** **** *** * * * ** **
20113006 CCGTCCACTCGTTTCGTCGAT--TG--GCTTAGGCATACGGAGT--TCATTCCCAGTCTAAGATC
455 CCG--CAAAAGTTTCAAAAATCATGAAAAATA-GAAAAC-GAGTCGTC-TTGCCA-TGAAACTTC
** * * ** ** ** * ***
20113065 AGACCAGACCGAGGGTT-ACGG--CA--G-CGGGGTTGGC-AGCACGTAAAGGGGGACCCGA-T-
514 --ACGTGA---AGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGG---C-ATTG
* ** * * ** **** ** * * * * **
20113121 GAATC-CCTAACT-T-ACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTG
569 GCA-CGCAGAAATATGAAG-AT---GTGCCTAAACCCACCT-ACCA-CC-C-T-ATCGATCCACG
* * * * * * * * **** ** ** *** *
20113183 GGTTGACTTAGGCATACGGTGT-TCAT-TCCCACTCTA-AG--CATATG-GAGTTCATTC-CTAG
624 GCTTG-C----GCATCCCGTCTCTC-TGGCCGAC-GTAGTGCCCGCCCGCCTGCCCGCCCGCTCG
** ** * ** ** ** **** * *
20113241 TCTAAGATCGGACCAGACCGAGGGTTACGGAAGCACATGCTGGGGGTGGGCT-TG-TGCTAGTGC
682 T-TTCG-TCGG--TTGGCTTAGGCATACGG-AGTTCAT--TCCCAGT---CTAAGAT-C-AG-AC
* ******* * * ** * * * * *
20113304 CACATTTTTCTTCACTGGGGCACCATCAACGG-AGCATCACCAGA---GAACCTGATCGGTGGCA
734 CAGACCGAGGGT---TGCGGCAGCAGGATCGGCAGCA--AGCAGAGGGGGACCCGATCGAT--C-
*** * * * ***** * ** * * ** **
20113365 TTAGGGTTTCGGCAAT-CGGTTGGGCCGGGGGGGTGTA-CGCCCGCACACTCGTTTCACGGCCTG
791 CCCGGCTTAC-GC-ATCCCGCCCCTCTGGCCGGCTG-AGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
20113428 ACTAAGGCATACGGAGTTTATTCCCAGTCTAA
853 ACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
20113460 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
20113525 CTCGGGCATATGCCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGGAG
66 CTCGGGCATGTG-CTGGTGCCGCATTTTTCTTCATCGGGGCA-C--CATC---G--T---CGGAG
* **
20113590 AACCTGATCGACGGCATTGGGGTTCCGGTGATCGGAGGGCCAGGGGGTGTGCGCACATGATGTGC
119 AACCTGACCGACGGCATTGGGGTTCCGACGATC--A-GG---GGGGGTGTGCGCACATGATGTGC
20113655 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
178 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
20113720 CCCCATTAAAGACCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGCAATG
243 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
20113785 GGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
308 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * * *
20113850 GCATGCCAACAAAAATACAAGGATCCCGTCTACCAAGTTTATGGCGAAAAATCCTTCCGAAAAAA
373 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
** ** * *
20113915 TTTTAAAAAATCCAAAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTG
438 TTTTAAAAAATCCCGAACC-GCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
20113980 CCATGAAACTTCACGT-ATAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCA
502 CCATGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
20114044 TTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCC-ATCGATCCACAGCTTACG
566 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
20114108 CAACCCGTCTCTCTGGCCGACGTAGTGCCGGCCCG-CTCGCCCGCCTGCCCGCTCGTTTCGTCGG
631 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCT-G--C-CC-GCCCGCTCGTTTCGTCGG
* * * * *
20114172 TTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGGGTTGTGGCAGT
691 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGC
* * * * *
20114236 AGGATCGACAGCACA-CAGACGGGGACCCGATCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGT
755 AGGATCGGCAGCA-AGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGC
* * * * * *
20114300 AGGTTGAGCGACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTA
819 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
20114365 A
884 A
* *** * *
20114366 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATTAGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * **
20114431 CTCGAGCATGTTCTGGTGTCATATTTTTCTTCACCGGGGCACCATCACCGGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGAC
* * * * * *
20114496 GGTATTAGTGTTCCGACGATCGGGGGGGCTGGGGGGCTGTGCGCACATGATGTGTGATCGGTG-T
131 GGCATTGGGGTTCCGACGATC-----AG--GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCT
* *
20114560 CAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
188 -GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
20114625 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
252 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* **
20114690 TTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATAACAA
317 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
20114755 -AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
382 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
* * * * *
20114819 ATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTTGTCTTGCCATCAAAC
447 ATCCCGAACCGC-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * ***
20114884 TTGACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATA
511 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
20114949 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTGCGCATCCCGTCT
576 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * ** * * * *
20115014 CTCTGGCTGGCGTAGTGCCCGCCCGCCCACCCACCCACTCGTTTTGTCAGTTGGCTTAGGCATAC
641 CTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
20115079 GGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAAGGTTGCGGTAGCAGGATCGACAGCACA-
706 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA-AG
* * *
20115143 CAGATGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
770 CAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * **
20115208 CGCTCGTTTCGTGGGCTGACTTAGGCATCCAAAGTTCATTCCCAGTCTAA
835 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
20115258 GCATGCAGAGCTCATTCCTAGTCTCAGATCGGATCGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
20115323 CTCGAGCATGTGATGGTGCCGTATTTTTCTTTC-CCGGCGCACCA---TC-----A-C-GA---T
66 CTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCATCGGGGCACCATCGTCGGAGAACCTGACCGA
* *
20115374 CGG----GGGG---C--CG---A---GGGGTGTGTGCACATGATGTGCGATGGTTGCTGGTACTT
130 CGGCATTGGGGTTCCGACGATCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* **
20115424 GGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATT
195 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
20115489 TGAGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATATTTTTTTCAAA
260 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
20115554 TGGAT-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAT
325 TGG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * * *
20115618 ACAAGGATCACTTTTACCAAGTTTAGGACTAAAACACC-TTCTGAAAAAATTTTAAAAAATCCCG
389 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCG
* ** * *
20115682 AACCGTAGAAAGTTTTGAGAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
453 AACCGCA-AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
20115747 TGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAGTGGCACGTAGAAATA
517 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * *
20115812 TGAAGATGTGCCAAAACCCAGCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGG
582 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* ** *
20115877 CC-ACGAAAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGT
647 CCGACG-TAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * *** * * *
20115941 TCATTCCAAGTCTAAGATCAGACCAGACTGAGGGTTACAATAGCAGGATTGGCAGCACGTAGAGG
711 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAAGCAGAGG
* ** * * * * * * *
20116006 GGGACCCGGTCGATCCCCATCATGCACATCCCGCCCCTCTGGCCGGCTGAGGGACCGTATGCTCG
776 GGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * *
20116071 TTTTGTGGGTTGACTTAGGCATATGGAATTCATTCCCACTCTAA
841 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
20116115 GCATACGGAGTTCATTCCCAGTCTAAGATGGGACTGGACCGTGGGTTGCGACGGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
20116180 TTCGGGCATGTGCTGGTGATGCATTTTTCTTC-TCCGGGGCACCATCACCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAT-CGGGG------CA-C----CATCGTCGGAG
**
20116244 AACCTGACCGGTGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
119 AACCTGACCGACGGCATTGGGGTTCCGACGATCA-----G--GGGGGGTGTGCGCACATGATGTG
* * *
20116309 CAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCAC
177 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
20116374 ACCCCATTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTAAT
242 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
20116439 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
307 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *** *
20116504 TGCATGCCAACAAGAATACAAGGATC-CTGTCTACTAAGTTCATGGCCAAAAATCCTTTCGAAAA
372 TGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * *
20116568 AATTTTAAAAAAT-CC-AACATCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCAT
436 AATTTTAAAAAATCCCGAAC--CG-CAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
20116631 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATG
498 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
20116696 GCATTGGCACGCAGAAATATGAAGATATACCTAAACCCACCTACCACCCTATCGATCCACGGCGT
563 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
20116761 ACGTATCCCATCTCTCTGGCCGACGTAGTGCCGGCCCGCCCGCCCGCCCGTTCGTTTCGTCAGTT
628 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTT
** * *
20116826 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGG
693 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * * * *
20116891 ATCGACAGCACGCAGACGGGGACCCGATCGATCCCCGGCTTTCGCATCCTGCCCCTCTGGCCGGT
758 ATCGGCAGCAAGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGC
* * * *
20116956 TGAGCGACCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
823 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * *
20117018 GCATACGAAGTTCATTCCCAGTCTAAGATCAAATCAGATAGAGGCTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
20117083 CTCGAGCATGTTCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCAGAGAACCTGACCGAT
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGAC
* * * * * ** *
20117148 GGCATTAGTGTTTCGATGATCGGGGGGGCTGGGGAGCTGTGCGCACATGATGTGCGATCAGTGCC
131 GGCATTGGGGTTCCGACGATC----AGG--GGGG-G-TGTGCGCACATGATGTGCGATGGGTGCT
20117213 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
188 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
20117278 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
253 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* ***
20117343 TTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT-AAGTTTTTTTGTGCATAATAA
318 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
* *
20117407 -AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTTTCCAAAAAAATTTTAAAA
382 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAAAAATTTTAAAA
* * * * * * *
20117470 AATCTCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAACAAAAAACGAGTCGTCTAGCCATCAAA
446 AATCCCGAACCGC-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * **
20117535 CTTCACGTGAAAGCTTAGGGGACCATTGTATGAATTTACAAGCCAT-AAATTGGCATTGGCATAC
510 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * *
20117599 AGAAATATGAAGATGTGACTAAACCCACCTATCACCCTATCGATCCATGGCTTGCGCATCCCGTC
575 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
20117664 TCTCTGGCTGGCGTAGT----G--C-CC-GCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
640 TCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * **
20117721 CGGAGTTCATACCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAACGCG
705 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAAG
* * * * * * * * * *
20117786 TAGATGAGGACTCGATCGATCCCCGAC-TAGCGTATTCCGCCCCTCTGGCCAGTTGAGTGCCCGC
770 CAGAGGGGGACCCGATCGATCCCCGGCTTA-CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
20117850 ACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
834 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * *
20117901 GCATGTGGAGTTCATTCCTAGTCTCAGATCGGATCAGACCGAGGGTTGTGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
20117966 CTCGAGCATGTGATGGTGCCGCA--TTT-TTC-T----------TCGTCGG-G-----G--C-AC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGAC
* *
20118008 --CA-------T-C-ACGATC-GGGGGGGTGTGCGCACATGATGTGCGTTGGGTGCTAGTACTTG
131 GGCATTGGGGTTCCGACGATCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
20118061 GCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
196 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
20118126 GAGATTGTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACA-TTTTTTCAAAT
261 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
20118190 GGAT-ACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATA
326 GG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * *
20118254 AAAGGATCACTTTTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA
390 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAA
* * *
20118319 CCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
455 CCG-CAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
20118384 AAGGCTT
519 AAGGCTT
20118391 TATGAAGATG
Statistics
Matches: 8375, Mismatches: 1465, Indels: 1000
0.77 0.14 0.09
Matches are distributed among these distances:
839 57 0.01
840 269 0.03
841 4 0.00
842 4 0.00
844 2 0.00
849 5 0.00
850 1 0.00
851 1 0.00
856 212 0.03
857 515 0.06
858 2 0.00
859 7 0.00
860 57 0.01
861 1 0.00
862 1 0.00
863 3 0.00
864 1 0.00
865 8 0.00
866 249 0.03
867 462 0.06
868 5 0.00
869 4 0.00
870 3 0.00
871 5 0.00
872 4 0.00
873 1 0.00
875 6 0.00
876 223 0.03
877 1 0.00
878 6 0.00
879 4 0.00
880 3 0.00
881 6 0.00
882 3 0.00
883 291 0.03
884 782 0.09
885 209 0.02
887 1 0.00
888 3 0.00
889 2 0.00
890 22 0.00
891 99 0.01
892 754 0.09
893 218 0.03
894 41 0.00
895 221 0.03
896 339 0.04
897 11 0.00
898 15 0.00
899 9 0.00
900 429 0.05
901 67 0.01
902 350 0.04
903 769 0.09
904 16 0.00
905 37 0.00
906 583 0.07
907 23 0.00
908 21 0.00
909 16 0.00
910 29 0.00
911 35 0.00
912 30 0.00
913 38 0.00
914 35 0.00
915 47 0.01
916 47 0.01
917 39 0.00
918 72 0.01
919 30 0.00
920 47 0.01
921 34 0.00
922 66 0.01
923 46 0.01
924 41 0.00
925 37 0.00
926 39 0.00
927 26 0.00
928 23 0.00
929 24 0.00
930 21 0.00
931 23 0.00
932 4 0.00
933 16 0.00
934 12 0.00
935 3 0.00
936 4 0.00
937 1 0.00
938 10 0.00
939 7 0.00
940 7 0.00
941 6 0.00
942 1 0.00
943 10 0.00
944 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGAC
GGCATTGGGGTTCCGACGATCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
CGCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAAGCAGAGGGGGAC
CCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20108968 original size:26 final size:26
Alignment explanation
Indices: 20108932--20108984 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20108922 GTGGACTCAG
* *
20108932 GCATTCGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20108958 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20108984 G
1 G
20108985 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20109835 original size:26 final size:26
Alignment explanation
Indices: 20109799--20109851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20109789 GTGGACTTAG
*
20109799 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20109825 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20109851 G
1 G
20109852 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20110730 original size:26 final size:26
Alignment explanation
Indices: 20110694--20110743 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20110684 GACTTAGGCG
*
20110694 TACGGAGTTCATTCCTAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
20110720 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20110744 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:20111629 original size:26 final size:26
Alignment explanation
Indices: 20111593--20111645 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20111583 GTTGACTTAG
20111593 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20111619 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20111645 G
1 G
20111646 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20113223 original size:26 final size:26
Alignment explanation
Indices: 20113194--20113246 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20113184 GTTGACTTAG
*
20113194 GCATACGGTGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
* * *
20113220 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
20113246 G
1 G
20113247 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:20113464 original size:26 final size:27
Alignment explanation
Indices: 20113429--20113485 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 27
20113419 CACGGCCTGA
*
20113429 CTAAGGCATACGGAGTTTATTCCCAGT
1 CTAAGGCATACGGAGTTCATTCCCAGT
20113456 CTAA-GCATACGGAGTTCATTCCCAGT
1 CTAAGGCATACGGAGTTCATTCCCAGT
20113482 CTAA
1 CTAA
20113486 AATCAGACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (27 bp):
CTAAGGCATACGGAGTTCATTCCCAGT
Found at i:20114376 original size:26 final size:26
Alignment explanation
Indices: 20114340--20114392 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20114330 GTTGGCTTAG
*
20114340 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20114366 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20114392 G
1 G
20114393 ATCAAATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20116118 original size:26 final size:26
Alignment explanation
Indices: 20116089--20116141 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20116079 GTTGACTTAG
*
20116089 GCATATGGAATTCATTCCCACTCTAA
1 GCATACGGAATTCATTCCCACTCTAA
* *
20116115 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCACTCTAA
20116141 G
1 G
20116142 ATGGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCACTCTAA
Found at i:20117021 original size:26 final size:26
Alignment explanation
Indices: 20116992--20117044 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20116982 GTTGGCTTAG
*
20116992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20117018 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20117044 G
1 G
20117045 ATCAAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20117985 original size:883 final size:883
Alignment explanation
Indices: 20104507--20118014 Score: 10816
Period size: 903 Copynumber: 15.1 Consensus size: 883
20104497 GTTGGCTTAG
* * * *
20104507 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
* ** *
20104572 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTGCCATCGTCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATC-AC---GCA----C-GAGA
** * * * * * *
20104637 ACCTGACCGGCGGCATTGGGGTTCTGGCGA--ACGGGGGCCGGGGGGGTGTGCGCACATGATGTA
121 ACCTGACCGATGGCATTAGGGTTCCGACGATCAGGGGGGCC-GGGGGCTGTGCGCACATGATGTG
* * * *
20104700 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATTAAACCTCGAGAACTCAA
185 CGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
20104765 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTG-AAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
20104829 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * *
20104893 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTT-GCAGCCAAATATCCTTCCGAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAG-GGCCAAAAATCTTTCCGAAAA
* * *
20104957 AATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCGTGAAAAATAGAAAATGAGTCGTC
443 AATTTTAAAAAAT-CCGAACAGTAAAAAGTTTCA-AAAATCGTGAAAAATAAAAAACGAGTCGTC
*
20105021 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGG
506 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
20105086 CATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
571 CATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
20105151 CGCATCCCGTCTCTTTGGTCGGCATAGT-GCCCGCCCGCCCACCTGCTCGCTCATTTCATCGGTT
636 CGCATCCCGTCTCTCTGG-CGACGTAGTCGCCCGCCCG--C-CC-GCTCG----TTTCGTCGGTT
* * * *
20105215 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAAATCAGACCGGACCGAGGGTTGCGGTAGCAGG
692 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGG
** * * * * *
20105280 ATCGACAGCACACAGA-GTGGGACCCAACCGATCCCCGGC-ATGTGCATCCCGCCCCTCTGGCCG
757 ATCGACAGCACGTAGACG-GGGACCCGATCGATCCCCGACTA-GCGCATTCCGCCCCTCTGGCCG
** * * * * * * *
20105343 ACTGAGCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACAGAGTTCATTTCTAATCTAA
820 GTTGAGCGACCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** ** * *
20105407 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGCTACGATTGCATATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
* * * ** * *
20105472 CTTGGGCATGTCCTGGTGCCATATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCACTGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCA---TC--A-C-GCAC--GAGA
** * * * * *
20105537 ACCTGACCGGCGGCATTAGGATTCC-AGCGATTA-GGGGGCCGGGGGGGTGTGCACACGTGATGT
121 ACCTGACCGATGGCATTAGGGTTCCGA-CGATCAGGGGGGCC-GGGGGCTGTGCGCACATGATGT
** * *
20105600 GCGATGGGTGCTGGTACTTGGCATTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCA
184 GCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
20105665 CATCCCCTTAACGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGGGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
20105730 TGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * *
20105795 GTGCGTGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
378 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCTTTCCGAAAA
* * * * *
20105860 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
443 AATTTTAAAAAAT-CCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
*
20105925 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCAT-AAAATGGC
507 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
20105989 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGC
572 ATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
20106054 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCTGCCCGTCCGCTCGTTTTGTCAG
637 GCATCCCGTCTCTCTGG-CGACGTAGT---CG------C-CC-GCCCGCCCGCTCGTTTCGTCGG
* * * * * *
20106119 TTGGCTTAGGCATACAGTGTTCATTCCCAGTCTAAGATCAGAACAGA-TAGAGGGTTGCGGGAAC
690 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGC
** * * * ** * * *
20106183 AGGATCGGTAGCACGTAAAGGGGGACCAGGCCGAT-CCCTAGCTTGCACA-TCCTGCCCCTCTGG
754 AGGATCGACAGCACGTAGACGGGGACCCGATCGATCCCCGA-CTAGCGCATTCC-GCCCCTCTGG
* * * * * *
20106246 TCGGCTGAGC-CCCGGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
817 CCGGTTGAGCGACC-GCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
20106310 TAA
881 TAA
* * * * * * *
20106313 GCATACGGAGTTCATTCCTAATCTAAGATTGGA-CTGGACCGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGTGACAGCACATGCTGG
* * *
20106377 GCTCGGGCATGTGCTGGCGCAGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCAGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCA-C---GCA----C-GAG
* * * * * ** * *
20106442 AACCTAACTGGA-GGCATTGGGGTTCTGGCGATTGGGGGGGCCGGGGGGTGTGCACACATGATGT
120 AACCTGAC-CGATGGCATTAGGGTTCCGACGATCAGGGGGGCCGGGGGCTGTGCGCACATGATGT
*** * *
20106506 GCGATGGGTGCTGGTACTTGGAATTTATATTGGCCCCCTATCGCTCATCAAA-CTCTAGAACTCA
184 GCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
20106570 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGGGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20106635 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
20106700 ATGCACGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAA
378 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAAT-CTTTCCGAAA
* * * * *
20106764 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTAGTC
442 AAATTTTAAAAAAT-CCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
20106829 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
506 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
20106894 CATTGACACACAGAAATATAAAGATGTG-CTTGAACCCACCTACCACCCTATCGATCCACGGCTT
571 CATTGGCACGCAGAAATATGAAGATGTGAC-TAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
20106958 GCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCTCGCCCGCCCG-TGCATTTCGTCGGTTAGCTTA
635 GCGCATCCCGTCTCTCTGG-CGACGTAGTCGCCCGCCCGCCCGCT-CGTTTCGTCGGTTGGCTTA
* * ** * * * *
20107021 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTACGGTAGCAGGATCGAT
698 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * *
20107086 AGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCG
763 AGCACGTAGACGGGGACCCGATCGATCCCCGACTAGCGCATTCCGCCCCTCTGGCCGGTTGAGCG
* * *
20107151 CCCGCACGCTCG-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
828 ACCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
20107206 G-AT-C-G-G---------A--C------C-G----GACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
* * * * *
20107245 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATC-AC---GCA----C-GAGA
** * * *
20107310 ACCTGACCGGCCGG-ATT-GTGG-TCCTGGCGATCAGGGGGGCCGTGGGG-GGTGCACACATGAT
121 ACCTGACC-GATGGCATTAG-GGTTCC-GACGATCAGGGGGGCCG-GGGGCTGTGCGCACATGAT
**
20107371 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
182 GTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
20107436 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
246 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
20107500 AATGTGGTCACTTTTTTCAAATGGTCACACAATCTTGTACACTTCGATTTTTTAGCTGAATTTTT
311 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * ** * *
20107565 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGAGCCAAAACGCCTTCCAA
376 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGG-GCCAAAAATCTTTCCGA
* * * * *
20107629 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
440 AAAAATTTTAAAAAAT-CCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCG
* *
20107694 TCTTGCCATGAAAGTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
504 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
20107759 GGCATTGGCATGCAGAAATATGAAGATGT-ACCCAAACCCACCTACCACCCTATCGATCCACGGC
569 GGCATTGGCACGCAGAAATATGAAGATGTGA-CTAAACCCACCTACCACCCTATCGATCCACGGC
* *
20107823 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCTGCTCGTTTCGTCGA
633 TTGCGCATCCCGTCTCTCTGG-CGACGTAGT---CG--C-CC-GCCCGCCCGCTCGTTTCGTCGG
* * * * * *
20107888 TTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGATCAGATTGAGGGTTGCGGTAGCA
690 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCA
* * * * * * * * *
20107953 GGATCGGCAGCAAGCAGAGGGGGACCCGGTTGATCCCCGGCTTA-CGCATCCCTCCCCTCTGGCC
755 GGATCGACAGCACGTAGACGGGGACCCGATCGATCCCCGAC-TAGCGCATTCCGCCCCTCTGGCC
* * * * *
20108017 GGCTGAGCGCCCACACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
819 GGTTGAGCGACCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
20108082 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACAGAGGTTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
* * * *
20108147 CTCGGGCATGTGCTGGTGCCGCA-TTTTCTTCGCCGCGGCACCAT--CGTC-GGAGAACCTGACC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCACG-CACGAGAACCTGACC
* * * * *
20108208 GACGGCATTGGGGTTCCGGCGATCA----GG--GGGGG-TGTGCCCACATGATGTGCGGTGGGTG
129 GATGGCATTAGGGTTCCGACGATCAGGGGGGCCGGGGGCTGTGCGCACATGATGTGCGAT-GGTG
* *
20108266 CTGGTACTAGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
193 CTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* *
20108331 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
**
20108396 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
* * * *
20108461 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAAAGATTTAAA
387 AACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAAT-CTTTCCGAAAAAATTTTAA
* * * * *
20108525 AAAATCCCGAACCG-CAAAATTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
451 AAAAT-CCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
* * *
20108589 AACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAATGGCAC
515 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * *
20108654 CCAAAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
580 GCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
20108719 TCTCTCTGGCCGGCGTAGT-GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
645 TCTCTCTGG-CGACGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** * * * * ** *
20108783 TTCATTCCTAGCCTAAGATTGGACCGGACCGAGGGTTGTGGCAGTAGGATTGGTAGCA-GACAGA
709 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACG-TAGA
* * * * * * **
20108847 -GAGGGACCCGA-CTGATCCCCGACTTA-CACATCCCACCCCTCTGGCCTGCTGAGCGCCCGCGC
773 CG-GGGACCCGATC-GATCCCCGAC-TAGCGCATTCCGCCCCTCTGGCCGGTTGAGCGACCGCAT
* * * * * * *
20108909 GTTCCTTTCATGGGTGGACTCAGGCATTCGGAGTTTATTCCCAGTCTAA
835 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
20108958 GCATACGGAGTTCATTTCCAGTCTAAGATCGAACCAAACCGAGGG-T-T-AC-G-----GC--AG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
* *
20109012 --C-A-CA--TGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAT--CGTCA-GAGAACCCGACC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCACG-CACGAGAACCTGACC
** * * *
20109068 GGCGGCATTGGGGTTCCGACGATC-GGGGGGACCGGGGGGTGTGCGCACATGATGTGCTATGGGT
129 GATGGCATTAGGGTTCCGACGATCAGGGGGG-CCGGGGGCTGTGCGCACATGATGTGCGAT-GGT
20109132 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
192 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* * * *
20109197 AGAGGGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
20109262 TTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
* *
20109327 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAA
387 AACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCTTTCCGAAAAAATTTTAAA
* * *
20109392 AAATCCCGAACCA-TAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
452 AAAT-CCGAA-CAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
*
20109456 AACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
515 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
20109521 AC-GAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
580 GCAG-AAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
20109585 GTCCCTCTGGCCAACGTAGT-GCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
644 GTCTCTCTGG-CGACGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
** * ** * *
20109649 GTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCAGCAGCAGGATTGGTAGCAG-ACG-
708 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGA-TCG-A-CAGCACGT
* * * * * * * * *
20109712 -GAGGGGGACCCGA-CTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCG
770 AGACGGGGACCCGATC-GATCCCCGACTAGCGCATTCCGCCCCTCTGGCCGGTTGAGCGACCGCA
* * * *
20109775 TGTTCCTTTCGTGGGTGGACTTAGGCATTCGGAGTTCATTCCCAGTCTAA
834 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
20109825 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACTGACGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
* *
20109890 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--CGC-CGAAGAACCCGACC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCACGCACG-AGAACCTGACC
** * *
20109952 GGCGGCATTGGGGTTCCGACGATC-GGGGGGACCGGGGGGTGTGCGCACATGATGTGCTG-TGGG
129 GATGGCATTAGGGTTCCGACGATCAGGGGGG-CCGGGGGCTGTGCGCACATGATGTGC-GAT-GG
*
20110015 TGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
191 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* * *
20110080 TAAAGGGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
256 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
20110145 CTTTTTTCAAATGGTCACAAAATCTTGTACAATTAGAGTTTTTAGTTGAATTTTTTTGTGCATGC
321 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
* * * *
20110210 CAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAA
386 CAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCTTTCCGAAAAAATTTTAA
* ** * *
20110275 AAAATCTCGAATCA-CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATG
451 AAAATC-CGAA-CAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATG
*
20110339 AAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
514 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * ***
20110404 CGTAGAAATATGAAGATGTGCCTAAACCCACCAATGGCCCTATCGATCCACGGCTTGCGCATCCC
579 CGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
20110469 GTCTCTCTGGCCGGCATAGTGCGCGCCCGCCTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGC
644 GTCTCTCTGG-CGACGTAGT---CG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
20110534 ATACGGAGTTCATTCTCAGTCTAAGATCAGACC-GAATCGAGGGTTACAGCAGCAGGATCGACAG
701 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGACAG
** * * * * * *
20110598 CACACAGAGGGGGACCCGATCGATCCCCGGCTTA-TGCATCCCGCCCCTCTGGCCGGCTGAGCGC
765 CACGTAGACGGGGACCCGATCGATCCCCGAC-TAGCGCATTCCGCCCCTCTGGCCGGTTGAGCGA
* * * *
20110662 CCGCACGCTCGTTTCGTAGGTTGACTTAGGCGTACGGAGTTCATTCCTAGTCTAA
829 CCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
20110717 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
* * *
20110782 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCA---TC--A-C-GCA-C-GAGA
* * * ** *
20110847 ACCTGACCGGTGGCATTAGGGTTTTCGTA--ATCAGGGGGGCCTGGGGCGGGTGTAAGCGCATGA
121 ACCTGACCGATGGCATTAGGG-TTCCG-ACGATCAGGGGGGCC--GGG-GGCTGTGCGCACATGA
* ** *
20110910 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATGTCTCATCAAACCTCGAGAAC
181 TGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* * * *
20110975 TCACATCCCCTTAAAAAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
245 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
20111040 GAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAATTTT
310 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
20111105 TTTGTGCATGCCAACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGA
375 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCTTTCCGA
* * * * *
20111170 AAAAATTTTAAAAACTCCTGAACCGGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
440 AAAAATTTTAAAAAATCC-GAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCG
20111235 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
504 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
20111300 GGCATTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
569 GGCATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** ** *
20111365 TGCGCATCCCGTCCCTCTGGCCGGCGTAGTTCCCGCCTACCCGGTCGCTCGTTTCGTCGATTGGC
634 TGCGCATCCCGTCTCTCTGG-CGACGTAG-T--CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
20111430 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC
695 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATC
* * * ** * * * **
20111495 GGCAGCACGTAGAGGGGGACTCGGCCGATCCCC-AGCTTGTGCA-TCTCGCCCCTATGGCCGACT
760 GACAGCACGTAGACGGGGACCCGATCGATCCCCGA-CTAGCGCATTC-CGCCCCTCTGGCCGGTT
** * *
20111558 GAGCGACCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
823 GAGCGACCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
20111619 GCATACTGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCGGCAGCACATGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCT-GG
* ** * * *
20111684 GCTCGGGCATGTTATGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCTTCCCGAGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCAT---C--A-C-GCAC--GAG
* * * * *
20111749 AACCTGACCGACGGCATTGGGGTTTCGACGATC-GAGGGGGCCGGGGGGTGTGCACACATGATGT
120 AACCTGACCGATGGCATTAGGGTTCCGACGATCAG-GGGGGCCGGGGGCTGTGCGCACATGATGT
* *
20111813 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
184 GCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
20111878 CACACCCTTAAAGAGCATTTGAGATTTTACTAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-GAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
20111942 ATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGATTTTAGCTGAATTTTTT
312 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
20112007 TGTGCATGCCAACAAAAACACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
377 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCTTTCCGAAA
* * ** * * * *
20112072 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAGAATCATGAAAAATAGAAAACGAGTCGTT
442 AAATTTTAAAAAATCC-GAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
*
20112137 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
506 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
20112202 CATTGGCATGCAGAAATATGAAGATGT-ACCTAAACACACCTACCACCCTATCGATCCTCAGCTT
571 CATTGGCACGCAGAAATATGAAGATGTGA-CTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
20112266 GTGCACCCCGTCTCTCTAGCCGGCGTAGT-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
635 GCGCATCCCGTCTCTCT-GGCGACGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
20112330 GCATTCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCA-CATGCTGG
699 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT-C---
* * * * *** ** ** * ** * *
20112394 GCTCAGGAATGT-G-CTGGTG--CCGCATTTTTCTTC-ACCGGGGCA--CC-ATCGTCGGAGAAC
760 G-ACA-GCACGTAGAC-GGGGACCCG-ATCGATCCCCGACTAGCGCATTCCGCCCCTCTG-G--C
* * * **** ** * ** * * * ** *
20112451 C---TGACCGGCGGCATTAGGGTTTCGACAATCGGGGGGGCCTGGGGCGGGTGTAAGCACATGAT
818 CGGTTGAGCGACCGCATGCTCGTTTCG----T--GGGTTGACTTAGGC----ATACGGAGTTCAT
* *
20112513 GTGCGATGGGTGCT--
873 -TCCCA---GT-CTAA
* ** * * * * * * * *
20112527 G-GTACTTGGCCCTTATATTGGCCC--CCTATGCCTC--ATCAAACC-----TCGAGA-ACTCAC
1 GCATAC--GG-AGTT-CATT--CCCAGTCTAAG-ATCGGATCAGACCGAGGGTTGTGACA-GCAC
* ******* * * * ** * * * * * * * * ** *
20112581 ATTCCCTTAAAGAGCCTTTGAAATTTTACAG-A-TTTGCTAC-C--AGTAGCCATTAAAGTGTCT
58 ATGCTGGGCTCGAGCATGTG--CTGGTGCCGCATTTTTCTTCTCGGGGCA-CCA-TCACG-CACG
* *** ** ** * * ** * ****** * ** * **
20112641 AAAATGGGGACACTTTTTTCA-AATGG-TCAC-AAAATCTTGTACATTTC-GAGTTTTTAGCTAA
118 AGAA-CCTGAC-C-GATGGCATTAGGGTTC-CGACGATC-AG-GGGGGCCGGGGGCTGT-GC-GC
* ** *** *** ** * * * *** *
20112702 ATCTTTTTGTGCG-TGCCAACAAAAATACAAGGATCACATCTACCAAGTTGGTGCCAAAACTCCT
175 A-CATGATGTGCGATG-GTGC--TGGTACTTGG--C-CCT-TA--TA-TTGG-CCCCCTA-TCCC
** ** * * ** * * * * *** *
20112766 TCCAAAAAAATTTTAAAAACTC-C-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAA
227 T-C-ATCAAACCTCAAGAACTCACAC-CCCCTTAAAGAG---C----AT-TTG--AGATTTTACA
* * * * * * * * * *
20112829 GGAGTCGTCTTGCCATGAAACTTCACGTGAAG-G-CT-TAA--GGGAC-CATTCTATGAACTTAC
279 GG-TTTG-C-TGCCA-GTAGC--CA-TTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAA---A-
* * * * * *** * *** ** ** *
20112888 AGGCCAAAAAAATGGCATTG-GCA-TGC-AG-AAATATGATGATATGCCTAAACCCACCTACCAC
332 TGGTC-ACAAAAT--C-TTGTACACTTCGAGTTTTTA-GCTGA-ATTTTTTTATGCA--TGCCA-
* *** * * ** ** * ****** **
20112949 CCTATCGATCCACGACTTGTGCATCCCGTCT-CTCTGGGCGGCGTAGTGCCCGCCCGCCCGTCC-
388 AC-AAAAAT--AC-A--AG-G-ATCACGTCTAC-C----AAGTTTAG-GGCCAAAAATCTTTCCG
**** ** **** ** * *** **** ** * *
20113012 -ACTCGTTTCGTCGATTGGCTTAGGCA-TACGGAG-TTC-ATTCCCAGTCTAAGATCAGACCAGA
439 AAAAAATTT--TAAAAAATCCGA-ACAGTAAAAAGTTTCAAAAATC-GTGAAAAAT-A-A--AAA
* * * *** *** ** * * *
20113073 CCGAGGGTTACGGC-AGCGGGGTTGGCAGCACGTAAAGG-----GGGACCCGA-TGAATCCCTAA
496 ACGA--G-T-CGTCTTGCCATG-AAACTTCACGTGAAGGCTTAAGGGA-CC-ATTGTAT---GAA
* ** ******* ** *** * ** * **
20113131 CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGT-TGACTTAGG
551 TTTA--CAAGCCATAAAAATGG-C-ATTG-GCA--CGCA-G-AAATAT-GAAGATGTGAC-TAAA
** * ** * * * * *
20113195 CATACGGTGTTCATTCCC-A-C--TCTA-AGCATATGGAGTTCATTCCTAGTCTAAGATC-GGAC
605 CCCAC-CT-ACCA--CCCTATCGATCCACGGC-T-T-GCG--CA-TCC-CGTCT---CTCTGG--
* ** *** * *** * * *****
20113254 CAGACCG-AG-GGTTACGGAAGCACATGCT-G-GGGGTGGGCTTGTGC-TAGTGCCACATTTTTC
654 C-GA-CGTAGTCG-CCCGCCCGC-C-CGCTCGTTTCGTCGG-TTG-GCTTAG-G-CATA-CGGAG
* * * * ** * *
20113314 TTCACTGGGGCACCA-TC-AACGGAGCATCACCAGAGAACCTGATCGG-T--GGCATTAGGGT-T
709 TTCA-T---TC-CCAGTCTAA--GATCA-GACC-G-G-A-CTGA-GGGTTGCGGCAGCAGGATCG
* * * * *** * *** * *** ** * * *** *
20113373 TCGGCA-ATCGGTTGGG-CCGGGGGGGTGTACG-CCCGCACACT-CGTTTCAC-GGCC---TGA-
761 ACAGCACGTAGACGGGGACCCGATCGATCCCCGACTAGCGCATTCCGCCCCTCTGGCCGGTTGAG
* ** * ** * ***** * *
20113429 CTAAGGCATACGGAGTTT-ATTCCCAGTC-TAAGCATACGGAGTTCATTCCCAG--T--
826 CGACCGCATGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
20113482 -C-TA---A----A-----A-TC--AGA-C----CAGACCGAGGGTTGCGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
* * *
20113525 CTCGGGCATATGCCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGGAG
66 CTCGAGCATGTG-CTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCA-C---G---CA-C-GAG
* * * ** *
20113590 AACCTGATCGACGGCATTGGGGTTCCGGTGATC-GGAGGGCCAGGGGG-TGTGCGCACATGATGT
120 AACCTGACCGATGGCATTAGGGTTCCGACGATCAGGGGGGCC-GGGGGCTGTGCGCACATGATGT
*
20113653 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
184 GCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
20113718 CACCCCATTAAAGACCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGCAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20113783 TGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
20113848 TTGCATGCCAACAAAAATACAAGGATCCCGTCTACCAAGTTTATGGCGAAAAATCCTTCCGAAAA
378 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCTTTCCGAAAA
* * *
20113913 AATTTTAAAAAATCCAAAACCA-TAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATC
443 AATTTTAAAAAATCC-GAA-CAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
*
20113977 TTGCCATGAAACTTCACGT-ATAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTG
506 TTGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
20114041 GCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCC-ATCGATCCACAGCTT
570 GCATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
20114105 ACGCAACCCGTCTCTCTGGCCGACGTAGTGCCGGCCCGCTCGCCCGCCTGCCCGCTCGTTTCGTC
635 GCGCATCCCGTCTCTCTGG-CGACGTAGT--C-G--C-C-CG--C-CC-GCCCGCTCGTTTCGTC
* * * * * *
20114170 GGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGTGGCAG
688 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAG
* ** * * * * *
20114235 TAGGATCGACAGCACACAGACGGGGACCCGATCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGT
753 CAGGATCGACAGCACGTAGACGGGGACCCGATCGATCCCCGACTAGCGCATTCCGCCCCTCTGGC
* * * * *
20114300 AGGTTGAGCGACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTA
818 CGGTTGAGCGACCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
20114365 A
883 A
** * * *
20114366 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATTAGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
* * ** * *
20114431 CTCGAGCATGTTCTGGTGTCATATTTTTCTTCACCGGGGCACCATCAC-C-GGAGAACCTGACCG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCACGCACGAGAACCTGACCG
* * * * * *
20114494 ACGGTATTAGTGTTCCGACGATCGGGGGGGCTGGGGGGCTGTGCGCACATGATGTGTGATCGGTG
130 ATGGCATTAGGGTTCCGACGATCAGGGGGGC-CGGGGGCTGTGCGCACATGATGTGCGAT-GGTG
* **
20114559 -TCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
193 CT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
20114623 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * **
20114688 TTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATAAC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
* *
20114753 AA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
387 AACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCTTTCCGAAAAAATTTTAAA
* * * * * *
20114817 AAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTTGTCTTGCCATCAA
452 AAATC-CGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
* * **
20114882 ACTTGACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
20114947 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTGCGCATCCCGT
581 CAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
20115012 CTCTCTGGCTGGCGTAGTGCCCGCCCGCCCACCCACCCACTCGTTTTGTCAGTTGGCTTAGGCAT
646 CTCTCTGGC-GACGTAGT---CGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * *
20115077 ACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAAGGTTGCGGTAGCAGGATCGACAGCAC
703 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
** * * * * *
20115142 ACAGATGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
768 GTAGACGGGGACCCGATCGATCCCCGACTAGCGCATTCCGCCCCTCTGGCCGGTTGAGCGACCGC
* * * **
20115207 ACGCTCGTTTCGTGGGCTGACTTAGGCATCCAAAGTTCATTCCCAGTCTAA
833 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
20115258 GCATGCAGAGCTCATTCCTAGTCTCAGATCGGATCGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
* *
20115323 CTCGAGCATGTGATGGTGCCGTATTTTTC-T-T----------T--C-C-CG-G---C-G--C-A
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCACGCACGAGAACCTGACCGA
* *
20115364 ---C--CA----T-C-ACGATC-GGGGGGCCGAGGGG-TGTGTGCACATGATGTGCGATGGTTGC
131 TGGCATTAGGGTTCCGACGATCAGGGGGGCCG-GGGGCTGTGCGCACATGATGTGCGATGG-TGC
* *
20115416 TGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTTAAGAACTCACACCCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* * *
20115481 AGAGCATTTGAGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATATTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
20115546 TTTTCAAATGGAT-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
324 TTTTCAAATGG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
* * * * * *
20115610 ACAAAAATACAAGGATCACTTTTACCAAGTTTAGGACTAAAACA-CCTTCTGAAAAAATTTTAAA
388 ACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAA-ATCTTTCCGAAAAAATTTTAAA
* * ** * *
20115674 AAATCCCGAACCGTAGAAAGTTTTGAGAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
452 AAAT-CCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
* *
20115739 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAGTGGCACG
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * *
20115804 TAGAAATATGAAGATGTGCCAAAACCCAGCTACCACCCTATCAATCCACGGCTTGCGCATCCCGT
581 CAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
20115869 CTCTCTGGCCACGAAAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCAT
646 CTCTCTGGCGACG-TAGT---CGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *** * *
20115934 ACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACTGAGGGTTACAATAGCAGGATTGGCAGCAC
703 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * * *
20115999 GTAGAGGGGGACCCGGTCGATCCCC-A-TCATGCACATCCCGCCCCTCTGGCCGGCTGAGGGACC
768 GTAGACGGGGACCCGATCGATCCCCGACT-A-GCGCATTCCGCCCCTCTGGCCGGTTGAGCGACC
* * * * *
20116062 GTATGCTCGTTTTGTGGGTTGACTTAGGCATATGGAATTCATTCCCACTCTAA
831 GCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
20116115 GCATACGGAGTTCATTCCCAGTCTAAGATGGGA-CTGGACCGTGGGTTGCGACGGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGTGACAGCACATGCTGG
* * **
20116179 GTTCGGGCATGTGCTGGTGATGCATTTTTCTTCTCCGGGGCACCATCACCGGAGCATCGTCGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCT-CGGGGCACCATCA-C---GCA----C-GAG
* * *
20116244 AACCTGACCGGTGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
120 AACCTGACCGATGGCATTAGGGTTCCGACGATCAGGGGGGCCGGGGGCTGTGCGCACATGATGTG
* *
20116309 CAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCAC
185 CGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
20116374 ACCCCATTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
20116439 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * *
20116504 TGCATGCCAACAAGAATACAAGGATC-CTGTCTACTAAGTTCATGGCCAAAAATCCTTT-CGAAA
379 TGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTAGGGCCAAAAAT-CTTTCCGAAA
* *
20116567 AAATTTTAAAAAATCC-AACATCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCAT
442 AAATTTTAAAAAATCCGAACA--GTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGT
*
20116631 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATG
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
20116696 GCATTGGCACGCAGAAATATGAAGATAT-ACCTAAACCCACCTACCACCCTATCGATCCACGGCG
570 GCATTGGCACGCAGAAATATGAAGATGTGA-CTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
20116760 TACGTATCCCATCTCTCTGGCCGACGTAGTGCCGGCCCGCCCGCCCGCCCGTTCGTTTCGTCAGT
634 TGCGCATCCCGTCTCTCTGG-CGACGTAGT--C-GCCCGCCCGCCCG--C--TCGTTTCGTCGGT
* *
20116825 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAG
691 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAG
* * **
20116890 GATCGACAGCACGCAGACGGGGACCCGATCGATCCCCGGCTTTCGCA-TCCTGCCCCTCTGGCCG
756 GATCGACAGCACGTAGACGGGGACCCGATCGATCCCCGACTAGCGCATTCC-GCCCCTCTGGCCG
* *
20116954 GTTGAGCGACCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
820 GTTGAGCGACCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** * * *
20117018 GCATACGAAGTTCATTCCCAGTCTAAGATCAAATCAGATAGAGGCTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
* *
20117083 CTCGAGCATGTTCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCAC-CA-GAGAACCTGACCG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCACGCACGAGAACCTGACCG
* * * * * *
20117146 ATGGCATTAGTGTTTCGATGATCGGGGGGGCTGGGGAGCTGTGCGCACATGATGTGCGATCAGTG
130 ATGGCATTAGGGTTCCGACGATCAGGGGGGCCGGGG-GCTGTGCGCACATGATGTGCGAT-GGTG
* *
20117211 CCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
*
20117276 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * ***
20117341 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT-AAGTTTTTTTGTGCATAAT
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTATGCATGCC
* *
20117405 AA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCAAAAAAATTTTAAA
387 AACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCTTTCCGAAAAAATTTTAAA
* * * *
20117469 AAATCTCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAACAAAAAACGAGTCGTCTAGCCATCAA
452 AAATC-CGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
* * * **
20117534 ACTTCACGTGAAAGCTTAGGGGACCATTGTATGAATTTACAAGCCAT-AAATTGGCATTGGCATA
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
20117598 CAGAAATATGAAGATGTGACTAAACCCACCTATCACCCTATCGATCCATGGCTTGCGCATCCCGT
581 CAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
20117663 CTCTCTGGCTGGCGTAGT-GCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
646 CTCTCTGGC-GACGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * * *
20117727 TCATACCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAACGCGTAGATG
710 TCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGACG
* * * * * * *
20117792 AGGACTCGATCGATCCCCGACTAGCGTATTCCGCCCCTCTGGCCAGTTGAGTGCCCGCACGCTCG
775 GGGACCCGATCGATCCCCGACTAGCGCATTCCGCCCCTCTGGCCGGTTGAGCGACCGCATGCTCG
* *
20117857 TTTCGTGGGCTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
840 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
20117901 GCATGTGGAGTTCATTCCTAGTCTCAGATCGGATCAGACCGAGGGTTGTGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
*
20117966 CTCGAGCATGTGATGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCACG
20118015 ATCGGGGGGG
Statistics
Matches: 10353, Mismatches: 1646, Indels: 1234
0.78 0.12 0.09
Matches are distributed among these distances:
855 3 0.00
856 208 0.02
857 520 0.05
858 9 0.00
859 14 0.00
860 57 0.01
861 2 0.00
863 3 0.00
864 1 0.00
865 5 0.00
866 262 0.03
867 998 0.10
868 24 0.00
869 13 0.00
870 16 0.00
871 14 0.00
872 17 0.00
873 12 0.00
874 12 0.00
875 157 0.02
876 268 0.03
877 18 0.00
878 16 0.00
879 20 0.00
880 37 0.00
881 17 0.00
882 9 0.00
883 313 0.03
884 787 0.08
885 196 0.02
886 12 0.00
887 16 0.00
888 3 0.00
889 18 0.00
890 43 0.00
891 110 0.01
892 736 0.07
893 257 0.02
894 185 0.02
895 258 0.02
896 356 0.03
897 24 0.00
898 30 0.00
899 27 0.00
900 565 0.05
901 235 0.02
902 411 0.04
903 1054 0.10
904 41 0.00
905 372 0.04
906 930 0.09
907 18 0.00
908 7 0.00
909 9 0.00
910 32 0.00
911 23 0.00
912 9 0.00
913 22 0.00
914 13 0.00
915 3 0.00
916 5 0.00
917 6 0.00
918 13 0.00
919 6 0.00
920 13 0.00
921 2 0.00
922 17 0.00
923 5 0.00
924 3 0.00
925 4 0.00
926 9 0.00
927 13 0.00
928 7 0.00
929 14 0.00
930 15 0.00
931 11 0.00
932 5 0.00
933 5 0.00
934 3 0.00
935 6 0.00
936 18 0.00
937 11 0.00
938 3 0.00
939 11 0.00
940 8 0.00
941 12 0.00
942 14 0.00
943 14 0.00
944 16 0.00
945 11 0.00
946 19 0.00
947 4 0.00
948 1 0.00
949 9 0.00
950 11 0.00
951 7 0.00
952 1 0.00
953 2 0.00
954 5 0.00
955 1 0.00
956 3 0.00
957 1 0.00
958 8 0.00
959 13 0.00
960 2 0.00
961 8 0.00
962 8 0.00
963 5 0.00
964 2 0.00
965 4 0.00
966 3 0.00
967 2 0.00
968 3 0.00
969 5 0.00
970 10 0.00
971 8 0.00
972 6 0.00
973 8 0.00
974 14 0.00
975 2 0.00
976 14 0.00
977 8 0.00
978 5 0.00
979 7 0.00
980 3 0.00
982 6 0.00
983 2 0.00
984 4 0.00
985 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCACGCACGAGAACCTGACCGA
TGGCATTAGGGTTCCGACGATCAGGGGGGCCGGGGGCTGTGCGCACATGATGTGCGATGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAAT
CCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCGACGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGACGGGGACC
CGATCGATCCCCGACTAGCGCATTCCGCCCCTCTGGCCGGTTGAGCGACCGCATGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20119589 original size:26 final size:26
Alignment explanation
Indices: 20119553--20119605 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20119543 GTTGACTTAG
20119553 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20119579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20119605 G
1 G
20119606 ATCAAATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20122420 original size:875 final size:872
Alignment explanation
Indices: 20121309--20124444 Score: 3568
Period size: 858 Copynumber: 3.6 Consensus size: 872
20121299 TCACACCCCC
* *
20121309 TTAAAGTGTCTAATATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTT
1 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
20121374 TAGCTGAATTTTTTTGTGCGTGCCAAAAAAAATACAAGGATCACATCTGCCAAATTTGGGGCCAA
66 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
20121439 AACTCCTTCCGAAAAAAGTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATA
131 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * * * *
20121504 GAAAACAAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTTCA
196 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACA
* * * * *
20121569 AGCCATAAAAATGGCATTTGCATGCAGAAATATGAAGATGTACCTAAACCAACCTGCCACCCTAT
261 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTAT
* * * *
20121634 CGATCCACGGCTTGCGCATCACGTCTCTCTGGCAGGAGTAGTGCCCACCCGCCTGCCCGCCCGTT
326 CGATCCACGGCTTGCGCATCCCATCTCTCTGGC-GGCGTAGTGCCCACCCGCC-GCCCGCCCGCT
* * **
20121699 CATTTTGTCGGCTGCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGG
389 CATTTCGTCGGTTGCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * *
20121764 TTGCGGTAGCAAGATCGACAGCACGCAGAGGGAG-CCCCGCCGATCCCTGACTTACGCATCCTGC
454 TTACGGCAGCAAGATCGACAGCACGCAGAGGGAGACCCAGCCGATCCC-GACTTACGCATCCTGC
* ** ** * *
20121828 CCCTCTGGCCAGCTGAGAACCTGCACGCTTATTTCATGGGTTGACTTAGGCTTACGGAGTTCATT
518 CCCTCTGGCCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
20121893 CCCAGTCTAAG-AT-CG-GATCG-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
583 CCCAGTCTAAGCATACGAGATCGAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * **
20121954 CTGATGCCATATTTTTCTTCGCCAAGGCACCATCACTGAAGCATCACCGGAAACCTGACCGACGG
648 CTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACTG-AGCAT-A-CGGAAACCTGACCGACGG
* * * *
20122019 CATTGGGGTTCCGACGATCGGGGCGGTCGGGGGGGTGTCCGCACATGATTTACGATGGGTGCTGG
710 CATTGGGGTTCCGA-GATCGGGGCGGTC-AGGGGGTGTGCGCACATGATGT-CGATGGGTACTGG
20122084 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
772 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
20122149 GCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCA
837 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
20122185 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTG
1 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
20122249 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAA
66 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
20122314 AACT-CTATCCAAAAAAATTTTAGAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAAT
131 AACTCCT-TCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* ** * *
20122378 AGAAAACGAGTTGTCTCACCATTAAACTTCACGTGAAGGCTTAAAGGACCATTGTATAAATTTAC
195 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAC
* * *
20122443 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCAACCTA
260 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTA
* * * *
20122508 TCGATCCACTGCTTGCGCATCCCATCTCTCTGGCTTGTGTAGTG-CCA-----C-CCCGCCCGTT
325 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGC-GGCGTAGTGCCCACCCGCCGCCCGCCCGCT
* * * * *
20122566 CATTTTGTCGGTTGGCC-TAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGACTACACTGAGG
389 CATTTCGTCGGTT-GCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * ** * * * * * *
20122630 GTTACGGCAGCAGGATCGATAATACGTAGAGGGGGACCCGGCCAATCCCCAGCTTGCGCAT-CTC
453 GTTACGGCAGCAAGATCGACAGCACGCAGAGGGAGACCCAGCCGATCCCGA-CTTACGCATCCT-
* * *
20122694 GCCCCTCTGGCCGGTTGAGTGCCTGGATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
516 GCCCCTCTGGCCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
20122759 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGAACCGAGGGTTGCGGCA
581 TTCCCAGTCTAAGCATAC---G---------------AGATCG-A--G-ACCGAGGGTTGCGGCA
* * *
20122824 GCACATGCTAGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCAT--C---G-
624 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACTGAGC
* * *
20122883 -T-CGGAAA----ACC-A--G-A--------CCG-G--C--GGC-AT-TGGGGGTGTGCGTACAT
689 ATACGGAAACCTGACCGACGGCATTGGGGTTCCGAGATCGGGGCGGTCAGGGGGTGTGCGCACAT
* * * **
20122923 GATGTGCGATGGGTTCTGGTAATTGGCCATTATATTGAACCCCTATCCCTCATCAAACCTCGAGA
754 GATGT-CGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
20122988 ACTCACACCCCTTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCA
818 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
20123043 TTACAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTT
1 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * *
20123108 TAGCTGAA-TTTTTTATGCACGCGAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAA
66 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * *
20123172 AATTCTTTTCGAAAAAATTTTCAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
131 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* *
20123237 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATGTACA
196 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACA
* *
20123302 AGCCATAAAAATGGCATTGGCATGCAGAAATGTGAAGATGTGCCTAAACCCGCCTACCAACCTAT
261 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTAT
** **
20123367 CGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCTGCCCGTCCGCCCGCCCGCT
326 CGATCCACGGCTTGCGCATCCCATCTCTCTGG-CGGCGTAGTGCCCACCCG-CCGCCCGCCCGCT
* * * * * * ** *
20123432 CGTTTCGTCGATTGGCTTAGGCGTACGGAGTTCATTCCCAGACTAAGATCACCCCAGATCGAGGG
389 CATTTCGTCGGTTGCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * * *
20123497 TTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCTAGCCGATCCCCGACTTACGCATCCCGC
454 TTACGGCAGCAAGATCGACAGCACGCAGAGGGAGACCCAGCCGAT-CCCGACTTACGCATCCTGC
* * * *
20123562 CCCTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATT
518 CCCTCTGGCCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* *
20123627 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGGCTGAGGGTT-AGACAGC
583 CCCAGTCTAAGCATACG-AG---------A-TC---G---AGA-C---C-GAGGGTTGCGGCAGC
* * * * * *
20123691 ATATGCTGGCCTCAGGCATTTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCA
626 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCA-CTGAGCA
* * * * *
20123756 TAGTCAGAGAACCTGACCGGCGGCGTTGGGGTTCCGATGATCGGGGGGGCCAGGGGGTGTGCGCA
690 TA--CGGA-AACCTGACCGACGGCATTGGGGTTCCGA-GATCGGGGCGGTCAGGGGGTGTGCGCA
* * *
20123821 CATGATGTGGATGGGTACTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAA
751 CATGATGTCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
** *
20123886 GAACTCACACCCCCTTGGAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCA
816 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
20123943 TTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTT
1 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
20124007 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCGAA
66 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * ** *
20124072 AAATCCTTCTGAATAAATTTTTAAAAAATCCTGAATTGCAAAAAGTTTCAAAAATTATGAAAAAT
131 AACTCCTTC-CAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* *
20124137 GGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTTTATGAATTTAC
195 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAC
* *
20124202 AAGCCATAAAAGTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
260 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTA
* * *
20124267 TCGATCCACGGCTTGCGCATCCCATCTCCCTGGTCGGCGTAGTGCCCGCCCGCGCGCCCACCCGC
325 TCGATCCACGGCTTGCGCATCCCATCTCTCTGG-CGGCGTAGTGCCCACCCGC-CGCCCGCCCGC
* * * * * *
20124332 TCGTTTCGTCGGTTGGCTTATGCATAC-AGAGTTCATTCCCAGTCTGAGATCTGACCGGACCGAG
388 TCATTTCGTCGGTTGCCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * *
20124396 GGTTATGGCAGCAAGATCGATAGCACGCAGA-GAAGGACCCAGCCGATCC
452 GGTTACGGCAGCAAGATCGACAGCACGCAGAGGGA-GACCCAGCCGATCC
20124445 TCAACTTGCA
Statistics
Matches: 1904, Mismatches: 250, Indels: 188
0.81 0.11 0.08
Matches are distributed among these distances:
849 3 0.00
858 440 0.23
859 16 0.01
860 1 0.00
861 4 0.00
862 3 0.00
863 2 0.00
864 1 0.00
865 57 0.03
866 182 0.10
867 103 0.05
868 91 0.05
869 3 0.00
870 1 0.00
871 1 0.00
873 2 0.00
874 5 0.00
875 270 0.14
876 62 0.03
877 2 0.00
878 1 0.00
879 3 0.00
881 3 0.00
883 6 0.00
884 1 0.00
886 1 0.00
888 1 0.00
889 5 0.00
892 1 0.00
893 4 0.00
894 65 0.03
895 1 0.00
897 1 0.00
899 47 0.02
900 182 0.10
901 333 0.17
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (872 bp):
TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTAT
CGATCCACGGCTTGCGCATCCCATCTCTCTGGCGGCGTAGTGCCCACCCGCCGCCCGCCCGCTCA
TTTCGTCGGTTGCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
ACGGCAGCAAGATCGACAGCACGCAGAGGGAGACCCAGCCGATCCCGACTTACGCATCCTGCCCC
TCTGGCCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGAGATCGAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGTATTTTTCTTCACCGGGGCACCATCACTGAGCATACGGAAACCTGACCGACGGCATTGG
GGTTCCGAGATCGGGGCGGTCAGGGGGTGTGCGCACATGATGTCGATGGGTACTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCA
Found at i:20122781 original size:26 final size:26
Alignment explanation
Indices: 20122745--20122797 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20122735 GTTGACTTAG
*
20122745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20122771 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20122797 G
1 G
20122798 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20123648 original size:26 final size:26
Alignment explanation
Indices: 20123611--20123663 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20123601 GTTGACTTAG
20123611 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20123637 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
20123663 G
1 G
20123664 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20124642 original size:171 final size:171
Alignment explanation
Indices: 20124261--20124642 Score: 375
Period size: 171 Copynumber: 2.2 Consensus size: 171
20124251 CCCACCTACC
* * * *
20124261 ACCCTATCGATCCACGGCTTGCGCATCCCATCTCC-CTGG-TCGGCGTAGTGCCCGCCCGCGCGC
1 ACCC-ATCGATCCACGGCTTGCGCATCCC-GCCCCTCTGGCTCGGCATACTGCCCGCCCGCGCGC
* * * **
20124324 CCACCCGCTCGTTTCGTCGGTTGGCTTATGCATACAGAGTTCATTCCCAGTCTGAGATCTGACCG
64 CCACCAGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCCAAGATCTGACCG
*
20124389 GACCGAGGGTTATGGCAGCAAGATCGATAGCACGCAGAGAAGG
129 GACCGAGGGTTATGGCAGCAAGATCGACAGCACGCAGAGAAGG
* * ** * * *
20124432 ACCCAGCCGATCCTCAACTTGCACATCCCGTCTCTCTGGCT-GGCATACTGCCCGCCCGTC-CGC
1 ACCCA-TCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCTCGGCATACTGCCCGCCCG-CGCGC
** *
20124495 CTGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAAGTTTATTCCCAATCCAAGAT-TGGAC
64 CCACCAGCTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAATCCAAGATCT-GAC
* * * * **
20124558 CAGG-CTGAGGGTTATGGTAGCAGGATC-AGCAGCACGTAGAGGGGG
127 C-GGACCGAGGGTTATGGCAGCAAGATCGA-CAGCACGCAGAGAAGG
* *
20124603 ACCCGATCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGC
1 ACCC-ATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGC
20124643 CGGTTAAGCA
Statistics
Matches: 168, Mismatches: 34, Indels: 18
0.76 0.15 0.08
Matches are distributed among these distances:
170 5 0.03
171 158 0.94
172 5 0.03
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.22
Consensus pattern (171 bp):
ACCCATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCTCGGCATACTGCCCGCCCGCGCGCCC
ACCAGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCCAAGATCTGACCGGA
CCGAGGGTTATGGCAGCAAGATCGACAGCACGCAGAGAAGG
Found at i:20124720 original size:26 final size:26
Alignment explanation
Indices: 20124686--20124735 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20124676 GACTTAGGTT
*
20124686 TACGGAGTTCATACCCAGTCTAAGCA
1 TACGAAGTTCATACCCAGTCTAAGCA
*
20124712 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATACCCAGTCTAAG
20124736 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATACCCAGTCTAAGCA
Found at i:20125609 original size:26 final size:26
Alignment explanation
Indices: 20125579--20125631 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20125569 GTTAACTTAG
20125579 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
20125605 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20125631 G
1 G
20125632 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20126417 original size:896 final size:892
Alignment explanation
Indices: 20124491--20128108 Score: 4829
Period size: 896 Copynumber: 4.1 Consensus size: 892
20124481 GCCCGCCCGT
* * * * * * * * *
20124491 CCGCCTGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTTATTCCCAATCCAAGATTGG
1 CCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTGG
* ** ** ** * * *
20124556 ACCAGG-CTGAGGGTTATGGTAGCAGGA-TCAGCAGCACGTAGAGGGGGACCC-GATCGATCCCC
66 A-CTGGACCAAGGGTTGCGACAGCAGGATTGA-CAGCACGTAGAGGGGGACCCGGGT-GA-CCCT
* * * * * *
20124618 GGCTTGCGTATCCCGCCCCTCTGGCCGGTTAAGCACTCGCACGTTCGTTTCATGGGTTGACTTAG
127 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAG
** * * *
20124683 GTTTACGGAGTTCATACCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
192 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * *
20124748 CGAGGGTTGTGACAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGCG
257 CGAGGGTTCTGACAGCACATGCTGGGCTC-GACATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
*** * *
20124813 CACCATCACCGGAGCATCGTCGTTCAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
321 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG
*
20124878 CC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
385 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
20124942 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
450 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
20125007 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
515 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
20125072 TTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAATAAAAATAAAAGGATCACGTCTACCAAGT
580 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGT
* * * **
20125136 TTGGGGCCAAAACTCCTTTCGAAAAATTTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATC
645 TTGGGGCCAAAAATCCTTCCGAAAAA-ATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* *
20125201 ATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTA
709 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *** * ***
20125266 TGAATTTACAAGCCATAAAAATGGCGTTGGCACATAGAAATATGAAGATGTGCCAAAACTTGCCT
774 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
20125331 ACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTAGCC-AGCGTAGTGCCCGC
839 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGT----GC
* * * * *
20125389 CCGCCCGCCCGCTCGTTTCATCG-TTGGCTTAGGCATATGGAGTTGATTCTCAGTCTAAGATCGG
1 CCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTGG
** * * * * * **** *
20125453 ACCAGACCGAGGGTTGTGGCAGTAGGA-TCAGCAGCACGTAGAGGGGGACCCAACCGATCCC-CG
66 ACTGGACCAAGGGTTGCGACAGCAGGATTGA-CAGCACGTAGAGGGGGACCCGGGTGA-CCCTGG
* *
20125516 CTTGCGCATCCCACCCCTCTGGCCGGCTAAACGCCCGCACGCTCGTTTCATGGGTTAACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGC
* * * * *
20125581 ATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACTGGACTG
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* *
20125646 AGGGTTACAG-CAGCACATGCTGGGCTCTGACATGTGCTGGTGCCAC-TTTTTCCTTTGTCGGGG
259 AGGGTT-CTGACAGCACATGCTGGGCTC-GACATGTGCTGGTGCCACATTTTT-CTTCGTCGGGG
* * *
20125709 CACCATCGCCGGAGCGTCGTCGGAGAACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGA
321 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-
* *
20125774 TC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
385 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
20125838 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
450 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
20125903 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
515 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
20125968 TTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATTACAAGGATCACACCTACCAAG
580 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGCCTACCAAG
** * *
20126033 TTTGGGGCCAAAAATCCTTTTGAAAAAATTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATC
644 TTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* * *
20126098 ATGAAAAATAAAAAACGAGTTGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
709 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
20126163 TGAATTTACTAGCCATAAAAATGGCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCT
774 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
20126228 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
839 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * *
20126282 CCGCCCTTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGGTTG
1 CCGCCC-GCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTG
* * * *
20126347 AACTGGACCAAGGGTTGCGACAGCAGGATTGATAGCTCATAGAGGGGGACCCGGGTGACCCGTGG
65 GACTGGACCAAGGGTTGCGACAGCAGGATTGACAGCACGTAGAGGGGGACCCGGGTGACCC-TGG
* * *
20126412 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGAA-TTAGG
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTT-AACTTAGG
*
20126476 CATACAGAGTTCATTCCCAGTCTAA-CAT-C-G-G---------A--C------C-GA----ACC
193 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* *
20126515 GAGGGTTGTGCCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
258 GAGGGTTCTGACAGCACATGCTGGGCTCGA-CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* * * * **
20126580 ACCATCATCGAAGCATCGTAGGAGAACCTGACCGACGGCATTGGGCTTCCGGTGATCGAGGGGGC
322 ACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGC
20126645 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
386 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
20126710 CCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
451 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
20126775 TAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCCTGTACACT
516 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
20126840 TCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGCCTACCAAGT
581 TCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGT
* * * * * *
20126905 TTGGGGCCAAAAATCCTTCTGAAATAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATT
645 TTGGGGCCAAAAATCCTTCCGAAA-AAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* *
20126970 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTA
709 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
20127035 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCGTAAACCCACCT
774 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
20127100 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
839 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* *
20127154 CCGCTCGTCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTGG
1 CCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTGG
** * * *
20127219 ACTGGAATGAA-GGTTGCGACAACAGGATCGACAGCACGTAGAGAGGGACCCGGGTGACCCCTGG
66 ACTGG-ACCAAGGGTTGCGACAGCAGGATTGACAGCACGTAGAGGGGGACCCGGGTGA-CCCTGG
* * * * * * *
20127283 CTTACGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCAAGCTCATTTCGTGGGTTGACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGC
*
20127348 ATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * * *
20127413 AGGGTTGC-GGCAGCACAAGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCATCG-CTGGGG
259 AGGGTT-CTGACAGCACATGCTGGGCTC-GACATGTGCTGGTGCCACATTTTTCTTCGTC-GGGG
* * * * *
20127476 CTCCATCGTCC-GAGCATCGCCGGAGAACCTGACCGGCGGCATTGTGGTTCCGACGATCGGGGGG
321 CACCATC-ACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * ***
20127540 GCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCCCATACTTGGCCCTTATATTGGCCCCCTA
385 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
20127605 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAAGTTTGCTG
450 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * * *
20127670 CCAGTAGTCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAAGGACACAAAATCTTGTTCAC
515 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
20127735 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTACAAAAT
580 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGT
* * *
20127800 TTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATC
645 TTGGGGCCAAAAATCCTTCCGAAAAAA-TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* * *
20127865 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAGGGGACCATTGTA
709 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
20127930 TGAATTTACAAGCCATAAAAATGGCATTCGCATGGAGAAATATGAAGATGTGCCTAAACCCACCA
774 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
20127995 ACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGC
839 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * *
20128049 CCGCCCGCCCGCTCGTTTCGTCAATTGGCTTAGGCATACGGGGTTCATTCCCAATCTAAG
1 CCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20128109 CATACAGAGT
Statistics
Matches: 2423, Mismatches: 242, Indels: 113
0.87 0.09 0.04
Matches are distributed among these distances:
869 3 0.00
870 104 0.04
871 438 0.18
872 248 0.10
873 1 0.00
874 3 0.00
875 2 0.00
881 1 0.00
883 1 0.00
884 1 0.00
886 1 0.00
892 2 0.00
893 11 0.00
894 20 0.01
895 413 0.17
896 710 0.29
897 397 0.16
898 67 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
CCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTGG
ACTGGACCAAGGGTTGCGACAGCAGGATTGACAGCACGTAGAGGGGGACCCGGGTGACCCTGGCT
TGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
GGTTCTGACAGCACATGCTGGGCTCGACATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
TCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGG
CCAAAAATCCTTCCGAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
Found at i:20127383 original size:26 final size:26
Alignment explanation
Indices: 20127346--20127398 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20127336 GTTGACTTAG
20127346 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20127372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20127398 G
1 G
20127399 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20128797 original size:737 final size:736
Alignment explanation
Indices: 20127341--20128844 Score: 2240
Period size: 737 Copynumber: 2.0 Consensus size: 736
20127331 CGTGGGTTGA
* * * *
20127341 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
1 CTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACAGAGTCCATTCCCAGTCTAAGATCGAAC
** * *
20127406 CGGACCGAGGGTTGCGGCAGCACAAGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCATCGC
66 CAAACCGAGGGTTGCGACAGCACAAGCTGGGCTCAGGCATGTGCTGGTGCCGCATTGTTCATCGC
* * *
20127471 TGGGGCTCCATCGTCCGAGCATCGCCGGAGAACCTGACCGGCGGCATTGTGGTTCCGACGATCGG
131 TGGGGCACCATCGTCCGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* * *
20127536 GGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCCCATACTTGGCCCTTATATTGGCCC
196 GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCCATACTTGGCCCCTATATTGGCCC
*
20127601 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAAGTTT
261 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
*
20127666 GCTGCCAGTAGTCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAAGGACACAAAATCTTGT
326 GCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAAGGACACAAAATCTTGT
* *
20127731 TCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTACA
391 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTACA
20127796 AAATTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAA
456 AAATTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAA
*
20127861 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAGGGGACCAT
521 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCAT
*
20127926 TGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGGAGAAATATGAAGATGTGCCTAAACCC
586 TGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
20127991 ACCAACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCG
651 ACCAACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGGCCAGCGTGGTGCCCGCCCG
20128056 CCCGCTCGTTTCGTCAATTGG
716 CCCGCTCGTTTCGTCAATTGG
**
20128077 CTTAGGCATACGGGGTTCATTCCCAATCTAAGCATACAGAGTCCATTCCCAGTCTAAGATCGAAC
1 CTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACAGAGTCCATTCCCAGTCTAAGATCGAAC
* * * * *
20128142 CAAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTGTTCTTCG-
66 CAAACCGAGGGTTGCGACAGCACAAGCTGGGCTCAGGCATGTGCTGGTGCCGCATTGTTCATCGC
* * * * *
20128206 TCGGGGCACCATTG-CCGGAGCATTGTCAGAGAACTTGACTGGCGGCATTGGGGTTCCGACGATC
131 T-GGGGCACCATCGTCC-GAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
***
20128270 GGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGG
194 GGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCCATACTTGGCCCCTATATTGG
* * * * * *
20128335 CCCCCTATCGCTCATCAAACCTCGGGAACTCACACCCCCTTAAATATCATTTGAGATTTTATAGG
258 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAG
* * * *
20128400 TTTGGTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
323 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAAGGACACAAAATCT
* * *
20128465 TGTACTCTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATTCAAGGATCACGTCT
388 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCT
* * * * *** *
20128530 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTT
453 ACAAAATTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTT
*
20128595 AAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
518 -AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGA
* *
20128660 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCATAAATATGAAGATGTGCCTAA
582 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAA
* * * * * *
20128725 ACGCACCTACCATCCTATCCATCCCCGGCTTATGCATCCCGTCTCTCTGGCCAGCGAT-GTGCCC
647 ACCCACCAACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGGCCAGCG-TGGTG-CC
**
20128789 GTCGCCCGCCCGCTCGCTCATTTCGTCGGTTGG
710 --CGCCCGCCCGCTCG----TTTCGTCAATTGG
* *
20128822 CTTAGTCATACGGAGTTCATTCC
1 CTTAGGCATACGAAGTTCATTCC
20128845 TAGCCTAAGA
Statistics
Matches: 685, Mismatches: 71, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
735 3 0.00
736 172 0.25
737 286 0.42
738 175 0.26
739 3 0.00
741 14 0.02
745 32 0.05
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (736 bp):
CTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACAGAGTCCATTCCCAGTCTAAGATCGAAC
CAAACCGAGGGTTGCGACAGCACAAGCTGGGCTCAGGCATGTGCTGGTGCCGCATTGTTCATCGC
TGGGGCACCATCGTCCGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCCATACTTGGCCCCTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAAGGACACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTACA
AAATTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAA
AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCC
ACCAACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGGCCAGCGTGGTGCCCGCCCG
CCCGCTCGTTTCGTCAATTGG
Found at i:20130000 original size:975 final size:976
Alignment explanation
Indices: 20128108--20130033 Score: 2703
Period size: 975 Copynumber: 2.0 Consensus size: 976
20128098 CCCAATCTAA
*
20128108 GCATACAGAGTCCATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACAGAGTCCATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTGCGACAGCACATGCTAGG
* * ** * * *
20128173 CTCGGGCATGTGTTGGTGCTGCATTGTTCTTCGTCGGGGCACCATTGCCGGAGCATTGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTGTTCTTCACCAGGGCACCATCGCCGGAGCATCGTCAGAGA
* * * * ** * * *
20128238 ACTTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGACATTGGGGTTCCGACGATCGAAGGGGTCCGGCGGGTGTGCGCACATGATGTA
* * *
20128303 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCGCTCATCAAACCTCGGGAACTCAC
196 CGATGGGTGCTGATACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
20128368 ACCCCCTTAAATATCATTTGAGATTTTATAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * *
20128433 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGATTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * * *
20128498 TGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
391 TGCATACCAACAAAAATACAAGGATCACGTCTAACAAATTTGGGGCCAAAACGCCTTCCGAAAAA
* * ** *
20128563 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
456 ATTTTAAAAAATCCTAAACCAAAAAAAGTTTTAAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
*
20128628 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
521 TGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
20128693 ATTGGCATGCATAAATATGAAGATGTGCCTAAACGCACCTACCATCCTATCCATCCCCGGCTTAT
586 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACGGCTTAC
20128758 GCATCCCGTCTCTCTGGCCAGCGATGTGCCCGTCGCCCGCCCGCTCGCTCATTTCGTCGGTTGGC
651 GCATCCCGTCTCTCTGGCCAGCGATGTGCCCG-CGCCCGCCCGCTCGCTCATTTCGTCGGTTGGC
* * * * * *
20128823 TTAGTCATACGGAGTTCATTCCTAGCCTAAGATCGGATCGGACCGACGGTTGCGGCAGTAAGATC
715 TTAGGCATACGGAGTTCATTCCTAGCATAAGATCGGACCAGACCGACGGTTACGGCAGCAAGATC
* * * *
20128888 GGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGGTTACGCATCCCTCCCCTCTGGCCGGCTGA
780 GGCAGCATGCAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGA
* ** *
20128953 GAGCCCGTACGCTCGTTTTGTGGGTTGACTTACGCATACAAAGTTCATTCCCAGTCTAAGCATAC
845 GAGCCCGCACAATCGTTTTGTGGGTTGACTTACGCATACAAAGTTCATTCCCAGTCTAAGCAGAC
* * *
20129018 GGAGTTCATTCGCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGACACTTTTTTCAAGTGGCTT
910 GGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAAGGTTGCGGACACTTTTTTCAAGTGGCTT
20129083 AG
975 AG
* *
20129085 GCATACAGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGC-AGCAGCACATGCTA
1 GCATACAGAGTCCATTCCCAGTCTAAGATCGA-ACCAAACCGAGGGTTGCGA-CAGCACATGCTA
* * * *
20129148 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGTGCACCATCGTCGGAGCATCG-CTGG
64 GGCTCGGGCATGTGCTGGTGCCGCATTGTTCTTCACCAGGGCACCATCGCCGGAGCATCGTC-AG
20129212 AGAACCTGACCGACGACATTGGGGTTCCGACGATCGAAGGGG-CCGGCGGGTGTGCGCACATGAT
128 AGAACCTGACCGACGACATTGGGGTTCCGACGATCGAAGGGGTCCGGCGGGTGTGCGCACATGAT
*
20129276 GTACGATGGGTG-TCGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
193 GTACGATGGGTGCT-GATACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
20129340 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
* *
20129405 AAAT-GGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTTGAGTTTTTAGCTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
** * *
20129469 TTTATGCATATGAACAAAAATACAAGGATCATGTCTAATAAATTTGGGGCC-AAACGCCTTCCGA
387 TTTATGCATACCAACAAAAATACAAGGATCACGTCTAACAAATTTGGGGCCAAAACGCCTTCCGA
*
20129533 AAAAATTTTAAAAAATCCTAAACCAAAAAAAAGTTTT-GAAAATCGTAAAAAATAGAAAACGAGT
452 AAAAATTTTAAAAAATCCTAAACC-AAAAAAAGTTTTAAAAAATCGTAAAAAATAGAAAACGAGT
* *
20129597 CGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTAGAGGCCATAAAA
516 CGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAA
20129662 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACGG
581 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACGG
* * * *
20129727 CTTGCGCATCCCGTCTCTTTGGCCGGCG-TAGT-CCC-CGCCCGCCATAG-TGCCTGCTCATTTC
646 CTTACGCATCCCGTCTCTCTGGCCAGCGAT-GTGCCCGCGCCCGCC--CGCT--C-GCTCATTTC
* * ** *
20129788 GTCGGTTGGCTTAGGCATATGGAGTTCATTCCCT-GTATAAGATTTGACCAGACTGA-GGTTTAC
705 GTCGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGCATAAGATCGGACCAGACCGACGG-TTAC
* * * * * **
20129851 GGTAGCAGGATTGGCATCATGCAGAGGGTGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCCT
768 GGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCT
* ** * **
20129916 TTGGTTGGCTGA-ACGCCCGCACAATCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
833 CTGGCCGGCTGAGA-GCCCGCACAATCGTTTTGTGGGTTGACTTACGCATACAAAGTTCATTCCC
*
20129980 AGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAAGGTT
897 AGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAAGGTT
20130034 ACAGCAGCAC
Statistics
Matches: 834, Mismatches: 101, Indels: 30
0.86 0.10 0.03
Matches are distributed among these distances:
971 8 0.01
972 1 0.00
973 5 0.01
974 212 0.25
975 319 0.38
976 146 0.18
977 143 0.17
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (976 bp):
GCATACAGAGTCCATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTGCGACAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTGTTCTTCACCAGGGCACCATCGCCGGAGCATCGTCAGAGA
ACCTGACCGACGACATTGGGGTTCCGACGATCGAAGGGGTCCGGCGGGTGTGCGCACATGATGTA
CGATGGGTGCTGATACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
TGCATACCAACAAAAATACAAGGATCACGTCTAACAAATTTGGGGCCAAAACGCCTTCCGAAAAA
ATTTTAAAAAATCCTAAACCAAAAAAAGTTTTAAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACGGCTTAC
GCATCCCGTCTCTCTGGCCAGCGATGTGCCCGCGCCCGCCCGCTCGCTCATTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCTAGCATAAGATCGGACCAGACCGACGGTTACGGCAGCAAGATCG
GCAGCATGCAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAG
AGCCCGCACAATCGTTTTGTGGGTTGACTTACGCATACAAAGTTCATTCCCAGTCTAAGCAGACG
GAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAAGGTTGCGGACACTTTTTTCAAGTGGCTTA
G
Found at i:20132633 original size:26 final size:26
Alignment explanation
Indices: 20132603--20132655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20132593 GTTGACTTAG
*
20132603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20132629 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20132655 G
1 G
20132656 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20133531 original size:26 final size:26
Alignment explanation
Indices: 20133494--20133546 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20133484 GTTGACTTAG
*
20133494 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20133520 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20133546 G
1 G
20133547 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20134425 original size:26 final size:26
Alignment explanation
Indices: 20134395--20134447 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20134385 GTTGACTTAG
*
20134395 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20134421 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20134447 G
1 G
20134448 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20134986 original size:903 final size:900
Alignment explanation
Indices: 20131728--20138888 Score: 9362
Period size: 901 Copynumber: 8.0 Consensus size: 900
20131718 GTTGACTTAG
* * * * * *
20131728 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATACTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
** * * * *
20131793 CTCATGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCT-GAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCAT--CCTAGAG
* * *
20131857 AACCTGACTGGCGGCATTTGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATG
128 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATG
* *
20131922 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * ** *
20131987 GCACCCTCTTAAAGAGCATTTGATATTTTACAGGTTTGCTAACAGTAGCCATTAAAGGGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
20132052 ATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTATTGGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * **
20132117 TGCGCATGCCAACAAAGATACAAGGATCACGTCTAAAAAAGTTTGGGGCCAAAACTCCTTCC-AA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAA-TCCTTCCGAA
* * * * *
20132181 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGAGTCAT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
20132246 CTTGCCATGAAGCTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
20132311 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGTTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
20132376 GCGCATCCCATCTCTTTGGCCAGCGTAGTGC-C-CGCCTGCCCGCCTGCTCGTTTCGTCGGTTGG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
20132439 CTTAGGCATACGGAGTTCATTCCCATTCTAAGAGTGA-ATCAGACCGAAGGTTGCAGTAGTAGGA
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCGAGGGTTGCAGCAGCAGGA
* * * ** *
20132503 TCGACAGCACGCAGAGGGGGACCCGACCGATCACCGGCTTGCCCATCCTACCCCTCTGGCCGGCT
775 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* *
20132568 GACCGACCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
20132629 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGAATGCAGCAGCACATGCTGGG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * *
20132694 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAACGGGGCACCATCCCCAGAGCATCGTCGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCCTAG-AGA
* * *
20132759 ACCTGACCGGCGACATTGGGGTTCTGGTGATCGGGGGGGCC--GGGGGGTGTGCACACATGATGT
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATGT
* *
20132822 GCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
20132887 CACCCCCTTATAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20132952 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
20133017 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAATCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAA
* * * * *
20133082 AATTTTAAAAAATCTCGAACTGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
20133147 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
20133212 ATTGGCACGCATAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
20133277 ACATCCCGTCTCTTTGGCCGGCGTAGTGC-C-CACCCGCCATAGTGCCCGCTCGTTTCGTCGGTT
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCCCGCC----CGCCCGCTCGTTTCGTCGGTT
* *
20133340 GGCTTAGGCATATGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGTT----------G
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGG
* * * * * * * * *
20133395 -T-GGTAGCATGCAGAGGGGGCCCCGATCGATACCCAGCTTGCACATCCCGCCCCTTTGGTCGAC
774 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
*
20133458 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** *
20133520 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGCTGTGATAGCACATGCTAGG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
20133585 CTCGGGCATGTGCTGCTGTCGCATTTTTCTTCGCC-GGGCACCATCGTCGGAGCATCGCCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATC-CTAGAGA
* *
20133649 ACCTGACCGGCGGCATTGGGGTTCCCGCGATCGGGGGGGCC--GGGGGGTGTACACACATGATGT
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATGT
* * *
20133712 GCGATAGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
20133777 CACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20133842 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** *
20133907 GTGCATGCCAA-AAAAGATACAAGGATCACGTCTAAAAAAGTTTGGGGCTAAAAATCCTTCCGAA
389 GTGCATGCCAACAAAA-ATACAAGGATCACGTCT-ACCAAGTTTGGGGC-CAAAATCCTTCCGAA
* * * *
20133971 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGATAATCTTGAAAAATAGAAAACTAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
20134036 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAGGCTATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
20134101 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** *
20134165 GCGCATCCCGTCTCTCTGGCCGGAATAGTGCTCGCCCGTCCGCCCGCCCGTTCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCC--CCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
20134230 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCATACTGAGGGTTGTC-GCAGCAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-CAGCAGCAG
* * **
20134294 GATCGGTAACACGCAGAGGGGGACCTAACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGA
773 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
20134358 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
20134421 GCATACAGAGTTCTTTCCCAGTCTAAGATCGGACCAGAATGAGGGTTGCGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* *
20134486 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATTGCCAGAGCTTCACTAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATC-CTAGAGA
* * * * * *
20134551 ACCTGACTGACGGCATTAGGGTTCCGGCGATCGGGGGGGTC-GGGGGGTTGTGCGCACATGATGT
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATGT
**
20134615 GCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCCTCATCAAACCTCGAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAACCTCGAGAACTC
* *
20134680 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
20134745 ATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
20134810 TGTGCAAGCCAACAAAAATACAGGGATGACGTCTACCATGTTTGGGGCCAAAATGCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAT-CCTTCCGAAA
*
20134875 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
20134940 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
20135005 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCCTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
20135070 CGCATCCCGTCTCTTTGGTCGACGTAGTGCCCACCCACCTACCCGCCCGCTTGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCC-CC-GCCCGCCCGCTCGTTTCGTCGGTTG
** * * *
20135135 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTACGGCAGTAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGA
* * * * * * *
20135200 TCGGTAGCACGCAGAGGGGGAACCCGGCTGATCCCCGACTTGTGCATCCAGCCCCTCTGGCCG-G
775 TCGGCAGCACGCAGAGGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * * * *
20135264 TCGAGCGCCCGCGCGCTCATTCCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAATCTAA
839 T-GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
20135327 GCACACAGAGTTCATTCTCAATCTAAGATTGGACCGGACTGAGGGTTATGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
** * * * *
20135392 CTCGGGCATGTGCTGGTGCCGCATTTTTCTT-TTCGGGGCACCATCGCCGGAGTATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCCT-AGAGA
* ** * * * *
20135456 ACCTGATCGGCGGCATTGGGGTTCTAGCGATCTGGGGGGCC-GGGGGGGTTTGCACTCATAATGT
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATGT
* * *
20135520 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCGCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
20135585 CACCCCCCTTAAAGGGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 CA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
20135650 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
20135715 TGTGCACGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAA
* * *
20135780 AAA-TTTAAAAAATCCCGAACCGC----------AAAAATCATGAAAAATAAAAAACGAGTTGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * * * *
20135834 TTGCCAAGAAACTTAACGTGAATGCTTAAGGGACAATTGTACGAATTTAGAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
20135899 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
20135964 CGCATCCAGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGTCCGCTCGTTTCCTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCG-CC-CCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** ** *
20136029 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGATTGAGGGTTAG-GGCAGCAGG
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-GCAGCAGCAGG
* * * * *
20136093 ATCGGCAGCACACAGAGGGGGACCC-AGTCGATCCCCAGCTTGCGCATCTCGCCCC-CGGGCCGA
774 ATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
*
20136156 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
838 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
20136219 GCATATGGAGTTCATTCCCAGTCTAGGATCGGACTGGACCT-AGGGTTGCGGTAGCACATGCTGG
1 GCATA-CGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CTGAGGGTTGCGGCAGCACATGCTGG
* ** * *
20136283 GCTCGGGCATGTGCTGGTGTCAAATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCCT-AGAG
* * *
20136348 AACCTGACCGACGGCATTGGGGTTCCAGG-GATCGAGGGGGCC-GGGGGGGTGTGCGCACATGAT
128 AACCTGACCGGCGGCATTGGGGTTCC-GGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGAT
*
20136411 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
** *
20136476 CATGCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCCATTAAAGTGTC-
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAG-CCATTAAAGTGTCT
* * *
20136540 GAAATGGGGACACTTGTTTC-AATTGTCACAAAATCTTGTACACTTCGAGTTTTTAACCTGAATT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATT
* *
20136604 TTTTTAGGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CAAAA-CCTTT
384 TTTTT--GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTC
* * ** * * * *
20136667 CAAAAAAATTTT--AAAATCCCAAACTACAAATA-TTTTGAAAATTGTGAAAAATTA-AAAATGA
447 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAA-TAGAAAACGA
* * *
20136728 GTCATCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAA
511 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
20136793 AAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
576 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
20136858 GGCCTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-G--CCCGCCCGCCCGCTCGTTTCGTTG
641 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCCCGCCCGCCCGCTCGTTTCGTCG
* * ** *
20136917 GTTGGCTTGGGCATACGGAGTTCATTCCCAGTTTAAGATC-GAACTGGACCGAGGGTTGCAACAG
706 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCAGCAG
* * *
20136981 CAGGAAT-GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGTCTTGTGCATCCCGCCCCTCTAG
770 CAGG-ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* ** * * * *
20137045 CCGGCTGAAAGCCCGCACGCTCATTTTATGGGCTGACATAGGCATACGGAAGTTCATTCCCAGTC
834 CCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG-AGTTCATTCCCAGTC
20137110 TAA
898 TAA
*
20137113 G-AT-C-AG---------A--C-----T-GGA-C---C-GAGGGTTGCGGCAGCACATGTTGGGC
1 GCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * **
20137153 TTGGGCATGTGCTGGTGCCGCCTTTTTCTTCACTGAGGCATCATCGTCAGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATC-CTAGAGAA
* * * * * * *
20137218 CCTGACCGGCGGCATTGGGGTTTCGGGGATCGAGAGGGCCAGGGGGGGTGTGCGCACTTGATGTG
130 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATGTG
* *
20137283 CGATGGGTGCTGGTACTTGGTCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
20137347 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
20137412 GGGAACACTTGTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTCTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
20137477 TGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAAA
* * * *
20137542 TTTTTAAAAAATCCCGGAA-CGGAAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTA
454 ATTTTAAAAAATCCC-GAACCGCAAAAA-GTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
20137606 TTGCCATGAAAATTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
20137671 CATGGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
20137736 CGTATCCCGTCTCTCTGGCCGGCGTAGTGCCTCCCCGCCCGCCCGCCCGCTCATTTCGCCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CTCGCC-CCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
20137801 GCTTAGGCATACGGAGTTCATACCCAGTCTAAGATCGGACCAGACCGATGGTTGTAGCAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGA
* * * * ** * ** *
20137866 TTGACAGCACGCAAAGGGGGACCC-AGCAGATCCCCGGCTTGCTTATCCTGCCCCTCTTTCCG-G
775 TCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * * *
20137929 TGAGCGCCCGCCCGCTCATTTCGTGGGTTGACTAAGGCATACGAAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
20137991 GCATACGGAGTTCATTCCCAGTATAAGATCGAATCAGACCT-A-GGTTGCGGCAGCACATGCTGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGA-CTGAGGGTTGCGGCAGCACATGCTGG
* ** * * * *
20138054 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTT-TTCGGGGCACCATCGTCGGAGTATCGTCAGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCCT-AGAG
* * * * *
20138118 AACCTGACCGGCGACATTGGGGTTCTGGCGATCTGGGGGGCC-GGGGGGGTTTGCACTCATGATG
128 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATG
** * *
20138182 TATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCGCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
20138247 ACACCCCCCTTAAAGGGCATTTGATATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 ACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
20138312 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATGTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
20138377 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CACCTCCGAC
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATC-CTTCCGAA
* ** * *
20138441 AAAATTTAAAAAAATCTTGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
20138506 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
20138571 GCATTGGCACGCAGAAATATGAAGATGTGCCCAAACACACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
20138636 GTGCATCCCGTCTCTCTGGCCGACGTAGTGC-CTG--CCCGCCCGCCCGATCGTTTCGTCGGTTG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTC-GCCCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *
20138698 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATCGAGGGTTGCAACAGCAGG
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGCAGCAGG
* * ** * * *
20138762 ATCGACAGCACGCAAAGGGGGACCCGACCGATGTCCGGCTTGCGTATCCCACCCCTTTGGCCGAC
774 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * *
20138827 TGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
20138889 AATTGGATCG
Statistics
Matches: 5494, Mismatches: 628, Indels: 279
0.86 0.10 0.04
Matches are distributed among these distances:
865 44 0.01
866 14 0.00
867 51 0.01
868 215 0.04
869 54 0.01
870 12 0.00
871 4 0.00
872 174 0.03
873 3 0.00
874 2 0.00
876 1 0.00
878 19 0.00
879 41 0.01
880 128 0.02
881 2 0.00
882 2 0.00
889 4 0.00
890 415 0.08
891 389 0.07
892 332 0.06
893 267 0.05
894 315 0.06
895 46 0.01
896 3 0.00
897 133 0.02
898 78 0.01
899 457 0.08
900 169 0.03
901 536 0.10
902 222 0.04
903 517 0.09
904 372 0.07
905 319 0.06
906 154 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCCTAGAGAAC
CTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20136223 original size:26 final size:26
Alignment explanation
Indices: 20136193--20136243 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20136183 GTTGACTTAG
20136193 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
20136219 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
20136244 GGATCGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20137997 original size:26 final size:26
Alignment explanation
Indices: 20137960--20138017 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
20137950 CGTGGGTTGA
20137960 CTAAGGCATACGAAGTTCATTCCCAGT
1 CTAA-GCATACGAAGTTCATTCCCAGT
*
20137987 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGAAGTTCATTCCCAGT
*
20138013 ATAAG
1 CTAAG
20138018 ATCGAATCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGAAGTTCATTCCCAGT
Found at i:20139693 original size:26 final size:26
Alignment explanation
Indices: 20139657--20139709 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20139647 GTTGACTTAG
*
20139657 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
20139683 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
20139709 G
1 G
20139710 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:20141000 original size:902 final size:894
Alignment explanation
Indices: 20139256--20142213 Score: 3715
Period size: 902 Copynumber: 3.3 Consensus size: 894
20139246 AACTCCTTCC
** *
20139256 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * *
20139321 TTTAAGGGACTATTGTATGGATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATGTGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * *
20139386 TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTTG-CTGAC
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCT-AC
* * * *
20139450 GTAGTGCCCGCCCG-TCCGCC-CTCCCGCTCGTTTCGTCAGTTAGCTTAGGCATACGGAGTTCAT
195 GTAGTGCCCGACCGCT-CGCCGCT-TCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * *
20139513 TCCTAGTGTAACATCGGACAGGATCGAGGGTTGTGGTAGCAGGATCGGCAGCACGTAGAA-GGGG
258 TCCTAGTCTAAGATTGGA-AGGAT-GAGGGTTGTGGCAGCAGGATCGGTAGCACGCA-AAGGGGG
* * * * * *
20139577 ACCCGATCGAT-CCTCGGCTTGCGCATCCCGCTCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTT
320 ACCCGACCGATCCCT-GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCC-AACGCTCGTT
*
20139641 TCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTCCATTCCCAGTC
383 TCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCCAGTCTAAGCATACAGAGTCCATTCCCAGTC
* * * **
20139706 TAAGATCGGATCGGACCGAGGGTTGC-AGCAACACATGCTGGGCTCAGGCATGTGCTGGTGTCAT
448 TAAGATCGGACCGGACCGAGGGTTGCGA-CAACACATGCTGGGCTCGGGCATGTGCTGGTGACGC
* * * * *
20139770 ATTTTTCTTCGTCGAGGCACCATCCCCGGAGGATCGTCGGATAACCTGACTGGCTG-CTTTGCGG
512 ATTTTTCTTCGCCG-GGCACCAT-CCCGGAGCAT-G-CGGAGAACCTGAC-GGC-GACATTGGGG
** * * *
20139834 TTTTGGCGATCAGAGGGGCCGGGGGGTGTGCGCACATGATGTGC-AGCGGGTGCTAGTACTTGGC
571 TTACGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATC-GGTGCTAGTACTTGGC
*
20139898 CCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGA
635 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGA
*
20139963 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAGACTTTTTTCAAATGG
699 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
20140028 TCACAAAATTTTGTACACTTCGGGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACCA
764 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * *
20140093 GGATCACGTCTACCAAATTTGGGGCTAAAACTCCTTC-CAAAAAATTTTTAAAAAATCCCCAACC
829 GGATCACGTCTACCAAGTTTAGGGCAAAAACTCCTTCTGAAAAAA-TTTTAAAAAATCCCAAACC
20140157 GT
893 GT
* * * *
20140159 AAAAAGTTTCGAAAGTCATGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTCCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
20140224 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* **
20140289 TGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCTTTG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCTACG
* * * *
20140354 TAGTGCCCAAACGCTCGCCGGTTCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCC
196 TAGTGCCCGACCGCTCGCCGCTTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * *
20140419 TAGTCTAAGATTGGAATGGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGCATAGGGGGAACC
261 TAGTCTAAGATTGGAA-GGA-TGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAAAGGGGGACCC
*
20140484 GACCG-TCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCACCCATACGCTCGTTTCGTG
324 GACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCA-ACGCTCGTTTCGTG
* ** * * *
20140548 GGTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTCCCCGTCTAAGA
388 GGTTGACTTAGGCATAAAGAGTTCATTCCCAGTCTAAGCATACAGAGTCCATTCCCAGTCTAAGA
* * * *
20140613 TTGGACCAGATCGAGGGTTGCGACAACACATGCTGGGCTCGGGCATATGCTGGTGACGCATTTTT
453 TCGGACCGGACCGAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTT
* * *
20140678 CTTCGCCAGGGCACCATCACCGGAGCATTGCCGGAGAACTTGATCGACGACATTGGGGTTCCGGC
518 CTTCGCC-GGGCACCATC-CCGGAGCA-TG-CGGAGAACCTGA-CGGCGACATTGGGGTTACGGC
* * * *
20140743 GATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATTGGTGTTGGTACTTGGCCCTTATAT
578 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATCGGTGCTAGTACTTGGCCCTTATAT
*
20140808 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAGAGAGCATTTGAGATTTTAC
643 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTAC
* * *
20140873 AGGTTTGCTGCCAGTAGCCATTAAAATG-CATAAAATGGGGACACATTTTTCAAATGGTCACAAA
707 AGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
20140937 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAACTACAAGGATCAC
771 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * *
20141002 GTCTACCAAGTTTAGGACAAAAACTCCCTCTGAAAAAATTTAAAAAAATCCCAAACCGT
836 GTCTACCAAGTTTAGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGT
* ** * * *
20141061 AAAAAGTTTAAAAAATTGTGAAAAATGGAGAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
20141126 CTTATGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * **
20141191 TGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCACATCCCGTCACTCTAGCCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCTACG
* * * * * * * * *
20141256 TAGTGCCCGTCCACCCGTCCGCCT-GCTCATTTCATCGGTTGCCTTAGGCATATGGACTTCATTC
196 TAGTGCCCGACCGCTCG-CCGCTTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
20141320 CCAATCTAAGATTGGACCA-GATTGAAGGTTGCGGCAGCAGGTTTGGCT-GCATGCAAAGGGGGA
260 CTAGTCTAAGATTGGA--AGGA-TGAGGGTTGTGGCAGCAGGATCGG-TAGCACGCAAAGGGGGA
* * * * *
20141383 CCCTG-CTGATCCTTGGCTTGCGCAT-CTCGCCCCTCTGGCCGGCTGAGTGCTCGCAA-GCTCAT
321 CCC-GACCGATCCCTGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGA--GCACCCAACGCTCGT
* *
20141445 TTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCTAGTCTAAGCATACGGAGTCCATTCCCAGT
382 TTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCCAGTCTAAGCATACAGAGTCCATTCCCAGT
* * * * *
20141510 CTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGATAGGCTCGGGCATGTGCTGGTGCCGC
447 CTAAGATCGGACCGGACCGAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTGCTGGTGACGC
* *
20141575 ATTTTTTTTCCCCGGGGCACCAT-------C--GCGGAGAACCTGACCGGC-AGCATTGGGGTTA
512 ATTTTTCTTCGCC-GGGCACCATCCCGGAGCATGCGGAGAACCTGA-CGGCGA-CATTGGGGTTA
* * *
20141630 CGACGATCGGGGGGGCCGGGGGGGATGTGCGCACATGATGTGCGATCGATGCTAGTACTTGGCCC
574 CGGCGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCAATCGGTGCTAGTACTTGGCCC
* *
20141695 TTATATTGGCCCCCTATCCCTCATCAACCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
637 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGA
* * **
20141760 TTTTATAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACGTTTTTTTCAAATGGTC
701 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * * *
20141825 ACAAAATCTTGTACATTTTGAGTTTTTAGCTAAATTTTTTTGTGCATCCCAACAAAAATACAAGG
766 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * * * * * * *
20141890 ATCACGCCTACCATGTTTAGAGCCAAAAA-TCCTTCTGAAAAAATTTTAAAAATTCTCGAGCCGC
831 ATCACGTCTACCAAGTTTAG-GGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGT
*
20141954 AAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
20142019 CGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * **
20142084 TGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCTACG
* * * * *
20142149 TAGTGCCTG-CCAGCCCGCCTGTCTGCCTGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTC
196 TAGTGCCCGACC-GCTCGCC-G-CT-TC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
20142213 A
256 A
20142214 CTCCCATCTA
Statistics
Matches: 1791, Mismatches: 225, Indels: 84
0.85 0.11 0.04
Matches are distributed among these distances:
890 1 0.00
891 40 0.02
892 10 0.01
893 447 0.25
894 10 0.01
895 1 0.00
897 32 0.02
901 3 0.00
902 759 0.42
903 476 0.27
904 7 0.00
905 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCTACG
TAGTGCCCGACCGCTCGCCGCTTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
TAGTCTAAGATTGGAAGGATGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAAAGGGGGACCCGA
CCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCAACGCTCGTTTCGTGGGT
TGACTTAGGCATAAAGAGTTCATTCCCAGTCTAAGCATACAGAGTCCATTCCCAGTCTAAGATCG
GACCGGACCGAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTT
CGCCGGGCACCATCCCGGAGCATGCGGAGAACCTGACGGCGACATTGGGGTTACGGCGATCGGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCAATCGGTGCTAGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
TTTAGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGT
Found at i:20143802 original size:877 final size:874
Alignment explanation
Indices: 20142177--20160624 Score: 8276
Period size: 902 Copynumber: 20.4 Consensus size: 874
20142167 CTGTCTGCCT
** * * * * * *
20142177 GCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCACTCCCA-TCTAAG-TCAGACTGGACTGA
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
** * * *
20142240 GGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGCGCAC
66 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * * * * *
20142305 CACCGCCAAAGCATCGTCGGAGAACCTGATCGGTGGCATCGGGG-GCC--C---C-----GG--G
131 CATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* *
20142357 GGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCT
196 GGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
20142422 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTACT
260 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
20142487 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
325 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
20142552 TTTTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGG
390 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * *
20142617 GCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCG-AGCTGCAAAAAGTTTCGAAAGTCATGA
455 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCT-CAAAAAGTTTCAAAAATCGTGA
* * *
20142681 AAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAG
519 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * *
20142746 TTTACGAGCCATAAAAATGGCAATGGGAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
584 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
** *
20142811 CCCTATCGATCCACGGCTTGCGTTTCCCGTCTCTCTGGCCGGCGTAGTGCCTGCACGCCCGCCCG
649 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CGCCCGCCCG
* * *
20142876 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGATCAGAC
713 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* ** * * *
20142941 TGAGGGCTGCAGCAGCAGGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGTA
778 TGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCA
* ** * *
20143006 TCCCGCCCCCCTGGCCGATTGAGCGCCCGTAT
843 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
20143038 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* *
20143103 GGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
66 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * * * * * *
20143168 CATCGTCAGAGTATTGCCGGAGAATCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGTCG
131 CATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* *
20143233 GGGGCTGTGCGCACATGATGTCTGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCT
196 GGGG-TGTGCGCACATGATGTC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
20143298 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAG
259 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
20143363 TAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
324 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* ** * *
20143428 ATTTTTTAGCTGAATTTTTTTGAACATGCCAACAGAAATACAAGGATCACGTCTACCAAGTTTCG
389 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* ** *
20143493 GGCCAAAACTCCTTCCGAAAAGATTTTAAAAAATCTTGAACCTCAAAAAGTTTTAAAAATCGTGA
454 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGA
* * *
20143558 AAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTACGAA
519 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** * *
20143623 TTTACACCCCATAAAAATGACATTGGCACGTAGAAATATGAAGATGTTCCTAAACCCACCTACCA
584 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* **
20143688 CCCTATCGATCCACGGCTTGCGTATCTTGTCTCTCTGGCCGGCGTAGTGCCCGCACGCCCGCCCG
649 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CGCCCGCCCG
* * * *
20143753 CCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGCCAAAC
713 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * *
20143818 TGAGGGTT--ATGACAGCAGGATCGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCG
778 TGAGGGTTGCA-G-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACG
* * * * **
20143881 CATCCCGCCCTTCTAGCCAGCTAAGCGCCTACAC
841 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
20143915 GCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
1 GCTCATTTCGTGGGTTGAC-----C-TA-G--G--------CA---T-A-C----GGAGTTCATT
* * *
20143980 CCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCATATGCTGGGCTCGGGCATGTGCTGG
40 CCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
20144045 TGCCGCATTTTTCCTCGTCGGGG---CA-C-T------ATCGTC---G-----GA----CGGTAT
105 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * *
20144087 TGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACA
170 TGGGGTTCCGACGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACT
20144152 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCAT
233 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
20144216 TTGAGTTTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAA
298 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * **
20144281 ATAGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGTGTGCCAACAAAAAT
363 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* *
20144346 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGA
428 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * *
20144411 A-CTGTAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACG
493 ACCT-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
**
20144475 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACCCAGAAATA
557 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* *
20144540 TGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGG
622 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * * *
20144605 CCGACGTAGTG--C-CTGCCTGCTCGCCCGATCGTTTCATCGGTTGGCCTAGGCATATGGAGTTC
687 CCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** * ** * * * * * *
20144667 ATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAGCATGATCGGTAGTACGCAAAGAGA
752 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * *
20144732 GACCCGACTGATCCCCGGC-TAGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCTGCAC
817 GACCCGACCGATCCCCGGCTTA-CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
20144790 GCTTGTTTCATTGGTTGACTTAGACATACGAAGTTCATTCCTAGTCTAAGCACACGGAGTTAATT
1 GC-----TCA-T--TT--C---G---T--G-GGTTGA--CCTAG-----GCATACGGAGTTCATT
* * * *
20144855 CCCAGTCTAAGATTC-AACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGAGCTG
40 CCCAGTCTAAGA-TCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* *** *
20144919 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCG-CTGGAGAACCTGATTAGCGGT
104 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTC-GGAGAACCTGACCGGCGGC
* * * * * * * * * *
20144983 AATGGGGTTCTGGCGATCAGGGGAGCCAGGGTGGTGTCCGCACATAATGTGTGGTGGTTGCTGGT
168 ATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGTGTGCGCACATGATGT-CGATGGGTGCTGGT
* *
20145048 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAG
230 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
20145113 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTGTTT
295 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
20145178 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGATTAATTTTTTTGTGCGTGCCAACAAA
360 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
20145243 AAAACAAGGACCACCTCTACCAAGTTTGGGGCCAAAA-TGCCTTCCGAATAAATTTTAAAAAATC
425 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATC
*
20145307 CC-ATACCGT-AAAACA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAAC
489 CCGA-ACC-TCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
20145369 TTCACATAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
551 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
*
20145434 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCT
616 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
20145499 CTCTGGCCAGCGTAGTGCCCGCCCGCCCACTCACCCGCTCGCTCGTTTCGTTGGTTGGCTTAGGC
681 CTCTGGCCGGCGTAGTGCCCG-CCG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * ** * *
20145564 ATACAAAGTTCATTCCCAGTCTAAGATCTGACC-GAACCAATGGTTGCAACAGCAGGATCGGCAG
741 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCAGCAGCAGGATCGGCAG
* * * * * * *
20145628 CATGCAAAGGGGGACCC-AGCCGATCCCTGGCTTACGCATCCTGCCCCTCTGGCCTGCTGAACAC
805 CACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
20145692 CTGCAC
869 CCGCAC
* * * * *
20145698 GCTCGTTTCGTGGGTTGACTTGGTTCCCAGTCTAAGTATATGGAGTTCATTCCCAGTCTAAGATT
1 GCTCATTTCGTGGGTTGA---------C---CTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** ** * ***
20145763 GGATTGGACCGAGGGTTACGATAGCACATGCTGGGCTCCGGCATGTGCTGGTGTTACATTTTTCT
54 GGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * *
20145828 TCATCGGGGCACCATCGTCGGAGCGTCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
119 TCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* *
20145893 TCAGGGGGGCCGGGGG-GTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGG
184 TCGGGGGGGCCGGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGG
**
20145957 CCGGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
248 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
20146022 TTTGCTGCCAGTAGCCATTAAAGTGTCTGCAATTGGAACACTTTTTTCAAATGATCACAAAATCT
313 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
20146087 TGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG-CGACAAAAAATACAAGGATCACGTC
378 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTC
* ** * *
20146151 TACCACGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTTT
442 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTT
*
20146216 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGA
507 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
**
20146281 CCATTGTATGAATTTACAAGATATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
572 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
** * ** *
20146346 ACCTGCCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCCAGCCGGTGTAGTG--C-
637 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * * * *
20146408 CCGCCCGCTCGCGCACTCATTTTGTCGGTTGCCTTAGGCATACGGAGTTCATTCTCAGTCTAAGA
702 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** *
20146473 TCGGACCAGA-TCGAGGGTTGCGGTAATAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCC
767 TCAGACCAGACT-GAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * *
20146537 CCGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAACGCCTGCAC
831 CCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * *
20146581 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * *
20146646 GGGTTACGGCAACGCATCCTGGGCTCCGGCATGTGCT-GTGCCGTATTTTTCTTCGTCGGGGCAC
66 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* *
20146710 CATCGTCGGAGCGTCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG
131 CATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-
*
20146774 GGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCC
195 -GGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
20146839 CTCATCAAACCTCAAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
258 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
20146904 GTAGCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
20146969 GAGTTTTTAGCTGAATTTTTTTGTGCATGACAAAAAAAATACAAGGATCACGCCTACCAAGTTTG
388 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * ** *
20147034 GGGCCAAAAATCCTTTCG-AAAAATTTTAAAAAATCTCGAACGGCAAAAAGTTTCAAAAATCATG
453 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTG
*
20147098 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGA
518 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
20147163 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACC
583 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * * * * * *
20147228 ACCCTATCGATCCGCGGCTTGCTTATCCCATCTTTCTGTCCGACGTAGTACCCACCCGCCCGCCC
648 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCGCCCGCCC
* * * *
20147293 GCCCTCTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAATCTAAGATCAGACCAGA
712 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * * ** * ** ** * *
20147358 CCGAGGGTTGCGATAGCA-CATGCTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTC-ATCACC
777 CTGAGGGTTGC---AGCAGCAGGATCGGCAGCACGCA-GAGGGGGACCCG-A----CCGATCCCC
*** *** ** *
20147420 GGGGAAC-CAT--CG--CCGGAGAAC--CTGACCGCCCGCA-
833 GGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * ** * *
20147454 GCTCGTTTCGTGAGTTGATTTAGGCTTACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A--
* * * *
20147519 CCTAGTGTAAGATCGGGCCAGATCGAGGGTTGCGGCAGTATATGCTGGGCTCAGGCATGTGCTGG
57 CC----G---GA------C----CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * ** * * * *
20147584 TGTCACATTTTTCTTCACCGGGGCACCATAG-CCGAAGCATCGTCGAAGAACCTGACCGGTGGCA
105 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAG-AGCATCGTCGGAGAACCTGACCGGCGGCA
* * *
20147648 TTAGGGGTTCCAACGACCGGGGGGGCCGGGAGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
169 TT-GGGGTTCCGACGATCGGGGGGGCCGGG-GGTGTGCGCACATGATGT-CGATGGGTGCTGGTA
* * *
20147713 CTTGGCCCTTATATTGGCTCCCTATCCTTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGC
231 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
20147778 ATTTGAGATTTTACAGGTTTGCTCCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTC
296 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
20147843 AAATGGTCATAAAATATTGTACACTTCGAGTTTTTAGCTCAATTTTTTTATGCATGCCAACAAAA
361 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
20147908 ATAGAAGGATCACATCTACCACA-TTTGCGGCTAAAACTCTTTCCGAAAAAATTTTAAAAAATCC
426 ATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
20147972 CGAACCGT-AAAAAGTTTCAAAATTTGTGAAAAATAAAAAACGAGTCCTCTTGCCATGAAACTTC
490 CGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * *
20148036 ACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCA-TTCATA
554 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT-AGA
* *
20148100 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCATGGCTTGCGCATCCCGTCTCT
618 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* ** * *
20148165 CTGGCCGGCGTAGTGCCTGTCCTTCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
683 CTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * ** * * *
20148230 AGTTAATTCGCAGTCTAAGATTTGATCAGA-TCGATGGTTGCAGCAGCAGGATCGACAGCACGCA
747 AGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCAGCAGCAGGATCGGCAGCACGCA
* * * * * * **
20148294 GAGGGGGACCCGACCGATCTCTGGCTTACGCATCCCG-TCCTTTCGGTCGGCTAAGCGCCCTTAC
811 GAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCT-GGCCGGCTGAGCGCCCGCAC
* * * * *
20148358 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGAACCAA
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * ***
20148423 GGGTTACGGCAGCACATGCTGGGCTAGGGCTTGTGCTGGTGTTACATTTTTCTTCGTCGGGGCAC
66 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
*
20148488 CATCGTCGGAGCATCG-CGGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
131 CATCGTCAGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * **
20148552 AGAGGGTGTGCGCACAAGATGTCCGATGGGTGCTGGTACTCAGCCCTTATATTGGCCCCCTATCC
195 -GGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
20148617 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
258 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
20148682 ATAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
20148747 GATTTTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTG
388 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
20148812 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAATATTCAGAACCGCAAAAA-TTTCAAAAATCATG
453 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTG
* * **
20148876 AAAAATAGAAAACGAGTCGTCTTGACATTAAACTTCACGCAAAGGCTTAAGGGACCATTGTATGA
518 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
20148941 ATTTACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTACCTAAACCCACCTACC
583 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
20149006 ACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCC
648 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCC
* * * * *
20149071 ACCCTCTCGTTTCGTCGGTTGGCTTAGACATACGGAGTTCATTCCCTGTCTAAGATCACACCAGA
712 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * ** * * *
20149136 CCGATGGTTGCAGCAGCAGGATCAACAGCATGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGC
777 CTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGC
* * *
20149201 ATCCCGCCCCGCTGGCCGGCTAAACGCCCGCAC
842 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * * **
20149234 GCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGA---GTTC
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGACCGGACC
* * * * ** * **
20149296 -A---TT-C-CCAGTCTA-A-GATCGGAC-C-GG-ATCGAG--GGTTGAGGCA-----GTAGGAT
64 GAGGGTTACGGCAG-C-ACATGCT-GGGCTCGGGCAT-GTGCTGG-TGCCGCATTTTTCTTCG-T
* * * * * ** * ** *
20149343 C--GGCAGCA-C-ACA-A--AT-G--GG-G-ACCCGATCGATCTCCAGCTTGCGCATCC--C-AC
123 CGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCG-GCGGCA--TTGGGGTTCCGACGAT
**** ** * * * * * ** *
20149393 CCCTAGGGCC--GACTGAGCGCCCGT-ACGCTCGTTTCGTG--GGTTGACTTAGG--C--ATA-C
185 CGGGGGGGCCGGGGGTGTGCGCACATGATG-TCGATGGGTGCTGG-T-ACTT-GGCCCTTATATT
**** * * * ** ** ** * * **** *
20149448 GGAGTTC-ATTCC-CAGTCTAAGCATACG-GATTTCATTCCCAGTCTAGA-ATCAGACCAGA--C
246 GGCCCCCTATCCCTCA-TC-AAACCT-CGAGAACTCACACCCCCT-TAAAGAGCATTTGAGATTT
* * * * ** * *** *
20149507 CA-AGGGTTGC-GGCAGCA--CATGCT-GGGCTCGGGCATGTGCTGGTGTCGA-ATTTTTCTTCA
307 TACAGGTTTGCTGCCAGTAGCCAT--TAAAG-T--GTC-TGAAATGG-G--GACACTTTT-TTCA
* * ** * * *** * * * * ** * *
20149566 CCGA-GG-CAC--CATCGCCGGAGCATCGTCGGAGAACCTGACCGTCGGCATTAGGGTTCCGGGG
362 --AATGGTCACAAAATC-TTGTA-CA-CTTC-GAG-TTTTTA--G-CTGAATT---TTTTTGTGC
* * ***** * * * ** * * * * *
20149627 AT-CTAGGGGGTCGGGGGGTGTGTGCACATGATGTGCAATGGGTACTGGAA-CTT-GGCCCTTAT
414 ATGCCA-----AC-----AAAAATACA-AGGA--T-C-ACGTCTAC--CAAGTTTGGGGCC-AAA
* ** **** ** * ** ** * ** * * * *** *
20149689 ATTGGCC--CCCTATCCCTCATCAAACCTCGAGAA-CTC-ACACCTCTT-AAAGAGCATTTGAGA
461 ACT--CCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGT-TTCAAAAATCGTGAAAAA
*** * * * *
20149749 TTTTACA-G-GTTTGCTGCTAGTAGCCATTAAAGTGT--C-TGAAAGG-----GGGA-CACTTGT
523 TAGAAAACGAG-TCG-T-CT--T-GCCATGAAACT-TCACGTG-AAGGCTTAAGGGACCA-TTGT
* * * ** * * * ****
20149803 TTCAAATGGT-C-A--CA-AAATCTTGTACACTTCG-A-GTTTTAAGATGAATTTTTTTATGCGT
579 AT-GAAT-TTACAAGCCATAAA-AATG-GCA-TTGGCACG---T-AGA--AATATGAAGAT--GT
*** * * ** * * * ****
20149861 GCC-AACAAAAAACAAGGATCACC--TCTA-CCA-GGTTTGGGGCCAAAATG-C-CT-T--CC-G
631 GCCTAA-ACCCACCTACCA-C-CCTATCGATCCACGGCTT-GCG-CATCCCGTCTCTCTGGCCGG
** * * ****** * ***** * *** ** * *
20149915 AATAAATTTTCAAAAATCCC-ACCGTAAAAT-GTTTCAAAAATC-G-TGAAAAATA-AAAAAC-C
691 CGT--A-GTGCCCGCCGCCCGCCCGCCCGCTCGTTTC----GTCGGTTG--GCTTAGGCATACGG
* * * * ** *
20149974 AGCCGTC-TTGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTA-TGA-ATTTACAAGCC
747 AG--TTCATTCCCA-G-----T--C-T-AA-G-ATCA--GACCA--G-ACTGAGGGTTGC-AG-C
** * * * ** * *
20150036 TTAAAAATGGCATTGGCACGTA-GAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGA
791 ---AGCA-GG-ATCGGCA-GCACG---CA-G-AG--G-G-------GGACC--CGA-CCGATC--
* * * * *
20150100 TCCACGGCTTGCGCATCCCGTCTCTTTGGCCGG-TGTAGTGCCCGTCCGTCCGCCC
830 -CC-CGGCTTACGCATCCCGCCCCTCTGGCCGGCTG-A--G--CG--C--CCGCAC
* * * * * * *
20150155 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACCGA
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * *
20150220 TGGTTGCAACAGCAGGATCAACA-GCACGTAGAGCGGGACCCGGCCGATCCCCG-GCTTGCGCAT
66 GGGTT---ACGGCA-G--C-ACATG--C-T-----GGG-CTCGGGC-AT----GTGC-TG-G--T
* *** * *** * * * * *
20150283 CCCGCCCCTCTGGCCAGTTGAGAGCCTGTACGC-TCGTTTCATGGGTTGAATTAGGCATACGGAG
106 GCCGCATTTTTCTTC-GTCG-G-G---GCAC-CATCG--TCA---G-AGCA-T---CGT-CGGAG
** * ** * * * * ** * **
20150347 TTCATTCCCAGTCTAAGCATACGGAGTTCATTTCGAATCTAAGATCGGACCGGACCAAGGGT-TA
153 AACCTGACC-GGC--GGCAT-TGGGGTTC----CG-A-C---GATCGG-GGGGGCCGGGGGTGT-
* * * *** * ** * *
20150411 CGATAGCACATGCTGGGCTCGGGCATGTGCTGCTGTCGTA-TT-TTTCTTCGT-CGGGGCACC-A
203 -G--CGCACATGAT--G-TC--G-ATG-GGTGCTG--GTACTTGGCCCTT-ATATTGGCCCCCTA
** * * * * ** * ** * ** * *****
20150472 TCGCCAGAGC-ATCGC-CGTAGAACCTGATCGGCAGCATTAGGGTTCCGGCGATCGGGGGGGCCG
255 TC-CCTCATCAAAC-CTCG-AGAA-CTCA-C-ACCCCCTTAAAG----AGC-AT-TTGAGATTTT
*** * * * **** * * ** *
20150535 GGGGGTGTGC-GCACATGATGTGCGATGGGTGCTGGTCTTGGCCCTTATATTGGCCCCCTATCCC
308 ACAGGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-GTC-T-G-----AAATGGGGACACT-T---
** ** * *** * * ** * *
20150599 TCATCAAA-CCTCA-AGAA-CTCACACCCCGTTAAAGAGCATTT--CAGATTTTATAGGTTTGCT
356 TTTTCAAATGGTCACAAAATCTTGTA-CAC-TT--CGAGTTTTTAGCTGAATTT-T---TTTG-T
** * * * * ** * *
20150659 GCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA--AT-GGGCTCAAAATCTT
412 G-CA-T-GCCAACAAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-CTC
* * ** *
20150719 GTATACTTCGATTTTTTAGTTGAATATTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTA
465 CT-T-C--CGA------A----AA-A--ATT-T---T----A-AAAAAT-C-CCGA--ACCTC-A
** *
20150784 CCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCA
499 AAAAGTTT-----CAAAAAT-CGT--G--AAA---------------------------------
20150849 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
521 --AA----------TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
20150914 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
574 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
** *
20150979 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCATGTCTCTCTAGCCGGCGTAGTCCTCGCC
639 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG---T-GCC
* * *
20151044 CGTCGACCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
700 CGCCG-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * *
20151109 AGATCAGACC-GGTTAGAGGGTTGCTG-AGCAGGATCGGTAGCATGCAGAGCGGGACCCGGCCGA
764 AGATCAGACCAGACT-GAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * *
20151172 TCCCTGGCTTGCGCATCCCACCCTTCTGGCCGGCTGAGCGCCCGCAC
828 TCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
20151219 GTTCGTTTCATGGTTTAGATTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
1 G--C---TCA---TTTCG--T--G------G-GTTGA--CCTAG-----GCATACGGAGTTCATT
* * ** * * *
20151284 CCCAGTCTAAGATCGGACCAGACCGAGGATTGTGACAGCAAATGCTGGGCTCGGGGATGTGCTGG
40 CCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * ** * *
20151349 TGTCGTATTTTTCTTCACCGGGGCACCATCG-CTAGAGCATCGTCGGAGAACCTTACTGGCGGCA
105 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-AGAGCATCGTCGGAGAACCTGACCGGCGGCA
* * * *
20151413 TTGAGGTTCC-AGCGATC-GGGGGGCCGGGGGGGTCTACGCACATGATGTGGGATGGGTGCTGGT
169 TTGGGGTTCCGA-CGATCGGGGGGGCC--GGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGT
*
20151476 TCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
230 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
20151541 CATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTCAAGTGTCTAAAATGGGGACACTTTTTT
295 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
20151606 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
360 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
20151671 AATACAAGGATCACGTCTACCAAGGTTAGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCT
425 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* *
20151736 CGAACCGT-AAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTC
490 CGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * *
20151800 ACGTGAATGCTTAAGGGACCATTGCATGATTTTACAAGCTC-TAAAAATGGCATTGGCATGTAGA
554 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGGCATTGGCACGTAGA
* * *
20151864 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTGCGCAACCCGTCTCT
618 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
20151929 CTGGCCGACGTAGTG--C-CCGCCTGCCCGCCCGCTTGTTTCATCAGTTGGCTTAGGCATATGGA
683 CTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * * *
20151991 GTTCATTCCCAGTCTAAGATCAAATCAGACTGAGGGTTACGGTAGTAGGATTGAG-AGCATGTAG
748 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCG-GCAGCACGCAG
* * * * *
20152055 AGGGGGACTCGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCAC
812 AGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
** * * * *
20152118 GCTTGTGTCGTGGGTTGACTTTGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGATTTCGTT
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAG--T---C-TA-AGA------T
* * * *
20152183 CCCAGTCTAAGATCAGACTGGACCGAGGTTTACGGCAGCACATGCTAGGCTCGAGCATATGCTGG
53 --C-G-----GA-C---C-GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
20152248 TGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGCCGGAGACCCTGACCGACGGCAT
105 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCAT
*
20152313 TGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTACT
170 TGGGGTTCCGACGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACT
* *
20152378 TGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTT
233 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
20152443 TTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCAGAAATGGGGAAACTTTTTT-AA
298 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
20152507 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAGAAAAAT
363 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * **
20152572 ACAAGGATCACGTTTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGA
428 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* *
20152637 ATCGT-AAAAAGTTTCAAAAATCGTG-AAAATAGAAAACGAGTCGACTTGCCATGAAACTTCACG
493 A-CCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
20152700 TGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
557 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* * *
20152765 TGAAGATGTGCCTAAACCCACCAACCAGCCTATCGATCCACGGCTTGCGCATCCGGTCTCTCTGG
622 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
20152830 CCGACGTAGTG--C-CCGCCCGTCTGCCCGTTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTC
687 CCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** * * * ** *
20152892 ATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACAGCAGCA-CATGCTGG--GCTGGGCATGT
752 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGAT-C-GGCAGC-ACGCA-GA
** ** **** * *** ** * ** *
20152954 GCTGGTGCCGTATTTTTCTTCATCGGGGCAC-CATCACCGGAGCATC--GCC-G--GAGAACCTG
813 GGGGGACCCG-ACCGATC--C-CCGGCTTACGCATC-CC-GCCCCTCTGGCCGGCTGAGCGCCCG
20153013 -ATC
872 CA-C
* * ** ** ** *
20153016 GGCGGCA-TT-G-GGGTT--CCTACG-AT-CGG-G-GGA--CCCGGAGGGGTGTG-T-GGACATG
1 -GC-TCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCC--A-GTCTAAGATCGGAC-CG
** * * * * **** * *** * * * **** *
20153068 ATGTGCGATGGG-TGCTG--GTACTTGACCCTTATAT-TGGC--CCCCT-ATCCCTCATCAAACC
60 --GACCGA-GGGTTACGGCAGCACATG---CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** *** ** * * * ** * * * ** * * *
20153126 TCAAAAAC-TCACACCCCCTTAAAGAGCAT--T-TGAG-ATTTTA-C--AGG-TTTGCTGCTACT
119 TC---GTCGGGGCACCATCGT-CAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* **** * * * *** * ** * * * **** *
20153182 AGCCAT-TAAAGTGTCTGAAATG-G-GGACACTTTTTTC-A-AGTTGTCACAAAATCTTGTACAC
180 A-CGATCGGGGGGGCCGGGGGTGTGCGCACA-TGATGTCGATGGGTG-C-TGGTA-CTTG-GC-C
* * * **** * *** ** * * *
20153242 TTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAGTACAAGGA-TCACATCTACCAAG
238 CTT-A--TATTGGC--CCCCTATCCCT-CAT--C---AAACCT-CGAGAACTCACA-C--CC--C
* * * * * **** * * * * * * **
20153306 TTTAGGGCCAAAATCTTTTCGAAAAAATTTTA-AAAAAT-CT-CGAATCG-TA-AAAAGTTTCAA
286 CTTA-----AAGAGCATTT-G---AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*** *** **** * * * * ** *
20153366 AAATAATGA-AAAATAAAAAACGAGTCGTCTCGCCAAGAAAC-T-T-CAC-GCGAAGGCTTAAG-
342 AAATGGGGACACTTTTTTCAA--A-T-G-GTC-ACAA-AATCTTGTACACTTCG-AGTTTTTAGC
* * * * * * * * * * *
20153425 GGACCA-TTGTATGAAATTACAAGCC-ATAAAAATGGCATTGGA--ATGGAT-TAGTC-A-TAT-
399 TGA--ATTTTTTTG----TGCATGCCAACAAAAAT-ACA-AGGATCA-CG-TCTA-CCAAGTTTG
** * * *** * * * * * *
20153482 -GG----AGTTCATTCCCAGTCTAAGTTT---AGA--CCGAA-C-C-GAAGGTTGTGATAGCAGG
453 GGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAAATCCCGAACCTCAAAAAGTT-TCA-A--A-A
** * ** ** * * * *
20153534 ATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCAG-CTTGCGCAT---CCTGTCCCTCTGGT
512 ATCGTGA-AAAATAGA-----AAACGA--G-T---C-GTCTTGC-CATGAAACT-TCAC-GT-GA
* * * * * * * * ** * **
20153595 TGGC-TGAGTGACTGCACGCTCGTTTCGTGAGTTGACTTATG-CATACGAA-GTTCATTCCCA-G
560 AGGCTTAAGGGAC--CA---T--TGT-ATGAATTTAC--AAGCCATAAAAATG-GCATTGGCACG
** ** * * * ** * * *
20153656 TCTAAGCATATCG-AG-T-T--C-ATTCCCAGTCTAACATCAGACTGGA-CCGA-GGGTTGTGGC
614 TAGAA--ATAT-GAAGATGTGCCTAAACCCA-CCTACCACCCTA-TCGATCC-ACGGCTTG-CGC
* * * * * * * ***
20153713 AGCACAT-TCT-GGGCTCGAGCAT-GTG-CTG--G--TG-CCG-CATTTC-TCTTCGTCGG--GG
672 ATCCCGTCTCTCTGGC-CG-GCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGT-TTCGTCGGTTGG
* * ** * * * * * *
20153765 C--A-CCATCGTCGGAG--CATCGTCGGAGAACT-TGATC-GA-CGGCATTG-GGGTTTCGGCGA
734 CTTAGGCAT--ACGGAGTTCAT--TCCCAG-TCTAAGATCAGACCAG-ACTGAGGGTTGCAGC-A
* ** * * * * ** *** * * * * ** *
20153821 TCGAGGGGCCGGGGGATGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA--TATT
792 GC-A-GGATC--GGCA---GCACGCA-GA-GGGGGACCCG-ACCGATCCCCGG--CTTACGCA-T
* ** * * * *
20153884 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-CACCCCCTTAAA
844 --CCCGC---CCCTC-T---GGC-CG-G--CTGAGCGCCCGC---AC
*** * ** * * ** ** * * ** *
20153930 GAGAATTT-GAGATTTTACAATTTTGC-T-CCCAATAGCCATT-AAAGTGTCTAAAAT-GG---G
1 GCTCATTTCGTGGGTTGAC--CTAGGCATACGGAGT--TCATTCCCA--GTCTAAGATCGGACCG
* **** * * * * ** ** *
20153987 GAAC-TTTTTTCAAATGGTCA-CAAAAT-CTTGTGCACTTTG-A-GT--TTTTAGCTG-ATTTTT
60 GACCGAGGGTT---ACGG-CAGC-ACATGC-TGGGCTC-GGGCATGTGCTGGT-GCCGCATTTTT
* * ** * ** * * * * * * **
20154044 TTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACT--CCTTC
117 CTTCGT-CGGGGC----ACCAT-C---G-TCAGAGC-ATC--G-TCGGAG---AACCTGACCGGC
****** *** ** ****** ***** **** * *** *****
20154107 --CAAAAAAATTTTAAAAAATCCATCACCGCAAAAAGT-TTTAAAAATTG-TGAAAAATAAAAAA
165 GGC-ATTGGGGTTCCGACGAT-CGGGGGGGCCGGGGGTGTGCGCACA-TGATG-TCGAT-GGGTG
* * ** * * ** ** *
20154168 C-GAGTCATCTT-GCCATGA-ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
225 CTG-GT-A-CTTGGCCCTTATATTGGC--CCCCT----AT--CCCT--CAT-C--AAACCT--CG
* ** * * * ** *
20154230 ATGTGCCTAAACCCACCTACCACCC-TACCGATCCA--CG-GCTTTCGTATCCCGTCTCT-CTGG
272 A---G----AACTCA-C-ACC-CCCTTAAAGA-GCATTTGAGATTT--TA-CAGGT-T-TGCTGC
* * * * ** *** * ** * * * *** *
20154290 C--T-GGC-GT--AGTGACCG-CCTGCCCACTCATTTCATCGATTGGCTCAGGC-ATATGGAGTT
321 CAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGG-TCA--CAAAATCTTGTA
* * * * * ****** * ** *
20154347 CA-TTCCCAG-TCTAAGATCGGACCGGACTGAGGGTTGCGGCAACAGGATTGGCAGAATGCAGAG
382 CACTT-CGAGTTTTTAGCT-GAATTTTTTTG-TGCATGC--CAACA--A-----A-AATACA-A-
** ** * ** *
20154410 GGGGACCCGATCGATCCCGGTCTTGCACATCCCGCCCTTCTGGCCGG-C-TGAGTTTTTGGCTGA
432 ---G----GATC-A---C-GTC-T--AC--CAAG---TT-TGG--GGCCAAAACTCCTT--CCGA
**** ** ** ** * *
20154473 ATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAGAAAACTAAT
472 A-AAAATT-T---T----A-AAAAAT-C-CCGA--ACCTC-AAAAAGTTT---CA-AAAA-T--C
* * *
20154538 TTCGAAAAAATTTTAAAAAATCTCGAACCG-CAAAAAGT-TTTCAAAATCGTGAAAAATAAAAAA
515 GT-G-AAAAA---TAGAAAA---CG-A--GTC-----GTCTTGC-----C---------------
*
20154601 TGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
544 --------------ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
20154666 TAAAAATGGCATTGGCACGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
595 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
20154731 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-------ACCCACCCGTCCGCTCGTTTA
660 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTC
* * * * * * * * *
20154789 ATCAGTCGGCTCAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTGCGG
725 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAG
** * * ** ** ** *
20154854 CAATAGGATTGGTAGCATACAGAGGGGGACCCGGTCGATCCCCTTCTTGCGCATCCCGCCCCTCT
790 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCT
* *
20154919 GGCCGACTGAGAGCCCGCAC
855 GGCCGGCTGAGCGCCCGCAC
* * * *
20154939 GCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T
* *
20155004 CCCAGTTTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTGCTGG
53 --C-G-----GA-C----CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
** * * *
20155069 TTTCGCATTTTTCTTCG-CTGGGGCACCATCGCCAGAGCATCGTTGGAGAACCTGACCGACGGCA
105 TGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCA
* * *
20155133 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCCCGCATGATGTGCGATGGGTGCTTGTAC
169 TTGGGGTTCCGACGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTAC
*
20155198 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCA
232 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
20155263 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTATTTTC
297 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT-TTTTC
* ** * * *
20155327 GAATGGTCACAAAAAGTTGTACACTTCCAGTTTTTAGCTGACTTTTTTTGTGCATACCAACAAAA
361 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
20155392 ATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCC
426 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * *
20155457 GAACCACAAAAAGTTTAAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCAC
491 GAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
20155522 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGGCATTGGCATGCAGAAAT
556 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
* * * * * *
20155587 ATGAATG-TGAGTCTAAACCCACCAACCACCCTATCGATCTACGGCTTACGCATCCCGTCTCTAT
621 ATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * ** *
20155651 GGCCGGCATAGTG--C-CCGTCTGCCCGCCTACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
685 GGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * *
20155713 TCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGTACGTAGAGG
750 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGG
* * * * *
20155778 GGGACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCACCCGCAC
815 GGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
20155838 GCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACCGAGTTCATT
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT--CG-G---A--
* * *
20155903 CCTAGTGTAAGATCAGACCGGACCAAGGGTTACGACAGCACATGCTGGGCTCGAGCGTGTGCTGG
57 CC--------G----GACC-G----AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
20155968 TGCTGAATTTTTCTTTGTCGGGG---CA----C----CATCGTCGGAGAACCTGACCGGCGACAT
105 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * * * *
20156022 TGGGGTTTCGACGATCGGGGGGGCTGGGGGGTGTGCGCAGATGATGTGCGATGGTTGTTGGTACT
170 TGGGGTTCCGACGATCGGGGGGGC-CGGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACT
** * * * ***
20156087 TCACCCTTATGTTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACACTTGCTTAAAGAGCAT
233 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
20156152 TTGAGATTTT-CAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
298 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
20156216 ATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCAAGCCAAAAAAAAT
363 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * **
20156281 ACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATCCTTA
428 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * * *
20156346 ACCGCAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGT
493 ACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* **
20156411 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCACACAGAAATAT
558 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
*
20156476 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGC
623 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * * * *
20156541 CGACGTAATGCCCGCCCGTCCGCCCGCCCGCTCATTTTGTCAGTTGGCTTAGGCATACGGAGTGC
688 CGGCGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * *
20156606 ATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTG-AGGCAGCAGGATCGGTAGCATGCAGACGG
752 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCA-GCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * * *
20156670 GGACTCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCGCCCGTAA
816 GGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
20156729 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G------
* *
20156794 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGG
56 ---A--C------C-G----GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
20156859 TGCCGTATTTTTCTTCG-CGAGGGCACCATCG-CTGGAGCATCGCCGGAGAACCTGACCGACGGC
105 TGCCGCATTTTTCTTCGTCG-GGGCACCATCGTC-AGAGCATCGTCGGAGAACCTGACCGGCGGC
* * * * *
20156922 ATTGGGGTTCCGGCAATCGAGGGGGCCGAGGGGGGTGTGCGCACGTGATGTGTGATGGGTGCTGG
168 ATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGTGTGCGCACATGATGT-CGATGGGTGCTGG
* ** *
20156987 TACTTGGCCCTTATATTGGCTCGTTATCCCTCATCAAACCTCGAGAACTCCCACCCCCTTAAAGA
229 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
20157052 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAACGTTTCTGAAATGGGGACACTTTTT
294 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
20157117 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTCTAGCTGAATATTTTTATGCATGCCAACAA
359 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * *
20157182 AAATACAAAGATCATGTCTACCAAATTTGGGGCCAAAACTCCTTTCGAAAAAATTTTTAAAAATC
424 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** * * *
20157247 CCGAACCGT-AAAAAGTTTTGAAAATCGTAAAAAATAGAAAATGAGTCGTCTGGCCATGAAACTT
489 CCGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
** *
20157311 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAA
553 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
* *
20157376 AATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCT
618 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
20157441 CTTGCCGGCGTAGT-------GCCCGCCCGCCCGCTCGTTTTGTCGTTTGGCTTAGGCATACGGA
683 CTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * *
20157499 GTGCATTCCCAGTCTAAGATCGGACTAGATTGAGGGTTGCGGCAGTAGGATCGGTAGCACACAGA
748 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGA
* * * *
20157564 GGGGGACCCGACCGATCCCAGGCTTACGTATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTAC
813 GGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * *
20157626 GCTCGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGA
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * *
20157691 GGGTTGCTGCAGCACATGCTGCGG-TCGGGCATGTGCTGATGCCACATTTTTTTTCGTCGGGGCA
66 GGGTTACGGCAGCACATGCTG-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * ** ** ** * * *
20157755 CCATCATCGGAGCATCACCAAAGAACCTGACCGATGGCACTGGGGTTCCGGCGATCGGCGGGGCC
130 CCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* *
20157820 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGACCCCCTATCC
195 -GGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
20157885 CTCATCAAACCTTGAGAACTCACATCCCCTTAAATAGCATATGAGATTTTACAGGTTTGCTGCCA
258 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
** *
20157950 GTAGCCATTAAAGTGTCTGAAATGGACACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
20158015 GAGTTTTTAGTTGATTTTTTTTGTGCATGCCAAAAAAAATACACGGATCACATCTACCAAGTTTG
388 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
** ** *
20158080 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGT-AAAAAGTTTTGAAAATCAT
453 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCGT
* * *
20158144 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCGTTGTATG
517 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * * *
20158209 AATTTACAAGCCATAGAAATGGCATTGGCATGCAGAAATATGGAGATGTACCTAAACCAACCTAC
582 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
20158274 CACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGG-C--C---G-G--CG--G---GCCC
647 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCC
* *
20158325 GTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
712 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
** * * ** * **
20158390 CCAAGGGTT----------G-T-GGTAGCATGCAGAGGGGGACCCGGTCGATCCCCAGCTTGTGC
777 CTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGC
* * * *
20158443 ATGCCACCCTTCTGGTCGGCTGAGCGCCCGCAC
842 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * *
20158476 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGA
1 GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * *
20158541 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCAC
66 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * ** * ** ** * *
20158606 CATCATCGGAGCATCACCGGACAACCTGACCGATGGCATTGGGG-TCCGACGATAAGCGGGGCTG
131 CATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* * * *
20158670 GAGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTCGCTCTTATATTGGGCCCCTATCCC
196 G-GGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
20158735 TCATCAAACTTCGAGAACTCACACCCCCTTAAAGTGTATTTGAGATTTAACAGGTTTGCTGCCAG
259 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
20158800 TAGCAACTAAAGTGTCTAAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
324 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
20158865 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGG
389 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * ** ** *
20158930 GGCTAAAAATCCTTTCAAAAAAATTTTAAAAAATCTAGAA-CTGCAAAAAGTTTTGAAAATCCTG
454 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCT-CAAAAAGTTTCAAAAATCGTG
* * *
20158994 AAAAATAGATAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCCTTGTATGA
518 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
20159059 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCTACC
583 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
20159124 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCC-CATCCACC
648 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGC--CCGCC
* * * * * * ** *
20159188 TGCTCGCTCATTTTGTTGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGG
711 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * * * * * * *
20159253 ACCGAGGGTTGCGGTAGCAAGATCAGTAGCACGTAGAGGGGGACTCGACTGGTCCCCGACTTGCG
776 ACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACG
* *
20159318 CATCCCGCCCCTCTGGCAGGCTGAGCGCCCACAC
841 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
20159352 GCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCATTTCGT-GG--G--TT--G---AC------C--T---AG-----GCATACGGAGTTCATT
* * * * * * * * *
20159417 CCCAGTCTAAGATTGGACTGGACCAACGGTTGCAGTAGCACATGCTGGGCTTGAGCATGTGCTGG
40 CCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * **
20159482 TGCTGCATTTTTTTTCGTCGGGGCACCATCATCGGAGCATCATCGGAGAACCTGACCGATGGCAT
105 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * * * *
20159547 TGGGG-TCCGGCGATCAGCGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
170 TGGGGTTCCGACGATC-GGGGGGGCCGGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACT
* * * *
20159611 TCGCTCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTAT
233 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
20159676 TTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGTCACTTTTTTCAA
298 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
20159741 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAAAT
363 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * *
20159806 ACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTTCGAAAAAAATTTAAAAAATCTCGA
428 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * * * *
20159871 ATCGT-AAAAAGTTTTGAAAAA-CGTGAAAAATAGAGAACGAGTCATCTTGCCATTAAACTTCAC
493 A-CCTCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * * * *
20159934 GTGATGGCTTCAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAAT
556 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
** * * *
20159999 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTAGCATCCCATCTCTTTA
621 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
*
20160064 GCCGGCGTAGTGCCCGCCCACACGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
686 GCCGGCGTAGTGCCCG----C-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
20160129 GAGTTCCTTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGTAGCAGGATCAGCAGCACGTA
746 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCA
* * * ** * *
20160194 GAGGGGGACCC-AGCCTATCCCCAGCTTACGCATTCCGCCCCTCTGGCCAACTGAG-GGCCGTAC
811 GAGGGGGACCCGA-CCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
20160257 GCTCGTTTTGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
1 GCTCATTTCG-TGG--G--TT--G---AC------C--T---AG-----GCATACGGAGTTCATT
* * * *
20160322 CCCAATCTAAGATCGGACCGGATCGAGGGTTGC-GCTAGCACATGCTAGGCTCGGGCATGTGCTG
40 CCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGC-AGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
20160386 GTGCCGCATTTTTTTTCGTCGAGGCACCATCGTC-GTGGCATCATCGGAGAACCTGACCGACGGC
104 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAG-AGCATCGTCGGAGAACCTGACCGGCGGC
20160450 ATTGGGGTTCC-AGCGATCGGGGGGGCCGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
168 ATTGGGGTTCCGA-CGATCGGGGGGGCCGGG-GGTGTGCGCACATGATGT-CGATGGGTGCTGGT
** * * *
20160514 ACTTGGCCCTTATATTGGCCCTGTATCCATCATCAAACCTCGAGAACTCACACGCCCTTCAAGAG
230 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
20160579 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCT
295 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
20160625 TGTACACTTC
Statistics
Matches: 13413, Mismatches: 2753, Indels: 2797
0.71 0.15 0.15
Matches are distributed among these distances:
837 3 0.00
838 1 0.00
839 6 0.00
840 7 0.00
841 5 0.00
842 10 0.00
843 26 0.00
844 15 0.00
845 13 0.00
846 7 0.00
847 15 0.00
848 15 0.00
849 461 0.03
850 221 0.02
851 20 0.00
852 6 0.00
853 4 0.00
854 15 0.00
855 4 0.00
856 10 0.00
857 8 0.00
858 7 0.00
859 14 0.00
860 7 0.00
861 44 0.00
862 81 0.01
863 113 0.01
864 90 0.01
865 17 0.00
866 33 0.00
867 37 0.00
868 47 0.00
869 492 0.04
870 113 0.01
871 411 0.03
872 277 0.02
873 77 0.01
874 23 0.00
875 309 0.02
876 459 0.03
877 944 0.07
878 120 0.01
879 399 0.03
880 142 0.01
881 33 0.00
882 14 0.00
883 178 0.01
884 25 0.00
885 18 0.00
886 29 0.00
887 365 0.03
888 175 0.01
889 27 0.00
890 32 0.00
891 724 0.05
892 28 0.00
893 23 0.00
894 165 0.01
895 156 0.01
896 47 0.00
897 496 0.04
898 280 0.02
899 703 0.05
900 479 0.04
901 285 0.02
902 946 0.07
903 125 0.01
904 148 0.01
905 549 0.04
906 437 0.03
907 5 0.00
908 136 0.01
909 7 0.00
911 3 0.00
912 6 0.00
913 30 0.00
914 3 0.00
915 1 0.00
916 4 0.00
917 4 0.00
918 6 0.00
919 10 0.00
920 6 0.00
921 53 0.00
922 7 0.00
923 5 0.00
924 2 0.00
926 2 0.00
927 3 0.00
928 4 0.00
929 3 0.00
930 1 0.00
931 2 0.00
932 2 0.00
933 5 0.00
934 5 0.00
935 4 0.00
936 11 0.00
937 11 0.00
938 24 0.00
939 9 0.00
940 15 0.00
941 19 0.00
942 11 0.00
943 13 0.00
944 2 0.00
945 6 0.00
946 9 0.00
947 3 0.00
948 1 0.00
949 5 0.00
950 10 0.00
951 8 0.00
952 2 0.00
953 8 0.00
954 1 0.00
955 7 0.00
956 9 0.00
958 3 0.00
959 2 0.00
960 2 0.00
961 7 0.00
962 4 0.00
963 3 0.00
964 4 0.00
965 8 0.00
966 9 0.00
967 8 0.00
968 3 0.00
969 3 0.00
971 3 0.00
973 4 0.00
974 1 0.00
975 6 0.00
976 3 0.00
977 7 0.00
978 3 0.00
980 1 0.00
981 5 0.00
982 1 0.00
984 2 0.00
985 2 0.00
986 5 0.00
987 4 0.00
988 5 0.00
989 3 0.00
990 9 0.00
991 11 0.00
992 2 0.00
993 10 0.00
994 4 0.00
995 2 0.00
996 6 0.00
997 12 0.00
998 17 0.00
999 21 0.00
1000 17 0.00
1001 26 0.00
1002 21 0.00
1003 30 0.00
1004 19 0.00
1005 13 0.00
1006 4 0.00
1007 10 0.00
1008 14 0.00
1009 8 0.00
1010 14 0.00
1011 4 0.00
1012 8 0.00
1013 9 0.00
1014 9 0.00
1015 7 0.00
1016 15 0.00
1017 8 0.00
1018 6 0.00
1019 17 0.00
1020 8 0.00
1021 8 0.00
1022 16 0.00
1023 26 0.00
1024 451 0.03
1025 621 0.05
1026 695 0.05
1027 711 0.05
1028 564 0.04
1029 706 0.05
1030 593 0.04
1031 548 0.04
1032 581 0.04
1033 523 0.04
1034 412 0.03
1035 482 0.04
1036 560 0.04
1037 516 0.04
1038 414 0.03
1039 482 0.04
1040 489 0.04
1041 367 0.03
1042 481 0.04
1043 412 0.03
1044 341 0.03
1045 385 0.03
1046 351 0.03
1047 321 0.02
1048 578 0.04
1049 240 0.02
1050 455 0.03
1051 339 0.03
1052 407 0.03
1053 210 0.02
1054 259 0.02
1055 558 0.04
1056 295 0.02
1057 253 0.02
1058 249 0.02
1059 320 0.02
1060 395 0.03
1061 292 0.02
1062 210 0.02
1063 260 0.02
1064 167 0.01
1065 255 0.02
1066 274 0.02
1067 227 0.02
1068 281 0.02
1069 240 0.02
1070 141 0.01
1071 238 0.02
1072 391 0.03
1073 128 0.01
1074 126 0.01
1075 134 0.01
1076 135 0.01
1077 303 0.02
1078 127 0.01
1079 161 0.01
1080 168 0.01
1081 210 0.02
1082 117 0.01
1083 294 0.02
1084 70 0.01
1085 177 0.01
1086 47 0.00
1087 132 0.01
1088 102 0.01
1089 63 0.00
1090 96 0.01
1091 68 0.01
1092 67 0.00
1093 73 0.01
1094 89 0.01
1095 207 0.02
1096 109 0.01
1097 52 0.00
1098 59 0.00
1099 41 0.00
1100 37 0.00
1101 94 0.01
1102 57 0.00
1103 65 0.00
1104 65 0.00
1105 55 0.00
1106 51 0.00
1107 32 0.00
1108 21 0.00
1109 30 0.00
1110 58 0.00
1111 29 0.00
1112 28 0.00
1113 20 0.00
1114 26 0.00
1115 23 0.00
1116 25 0.00
1117 15 0.00
1118 16 0.00
1119 12 0.00
1120 18 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (874 bp):
GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
CATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
GGGGTGTGCGCACATGATGTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCC
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
GGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCC
CGCCCCTCTGGCCGGCTGAGCGCCCGCAC
Found at i:20143968 original size:26 final size:26
Alignment explanation
Indices: 20143938--20143990 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20143928 GTTGACTTAG
20143938 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
20143964 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20143990 G
1 G
20143991 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20144516 original size:879 final size:885
Alignment explanation
Indices: 20142200--20160624 Score: 8451
Period size: 877 Copynumber: 20.3 Consensus size: 885
20142190 GTTGGCTTAG
* * * * ** *
20142200 GCATACGGAGTTCACTCCCA-TCTAAG-TCAGACTGGACTGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
20142263 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGCGCACCACCGCCAAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG-G--GCA---CC-ATG-ATCGTCGGAG-
* * * ** *
20142328 ACCTG-A-T-CGG-T--GGC-ATCGGGGGCCCCGGGGGGGTGTGTGCACATGATGTGCGATGGGT
122 ACCGGTATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
20142386 GCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACTCACACCCCCTT
186 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
20142451 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCTACTAGCCATTAAAGTGTCTGAAATGGGGACAC
251 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
20142516 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTACATGCC
316 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
20142581 AAAAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCGAAAAAATTTAAAA
381 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * * *
20142646 AAATCCCGAGCTGCAAAAAGTTTCGAAAGTCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAA
446 AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * * *
20142711 ACTTCACGTGAAGGCGTAAGGGACCATTGTATGAGTTTACGAGCCATAAAAATGGCAATGGGAGG
511 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* **
20142776 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTTTCCCGT
576 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
*
20142841 CTCTCTGGCCGGCGTAGTGCCTGCACGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
641 CTCTCTGGCCGGCGTAGTGCCCGC-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * **
20142906 ACAGAGTTCATTCCCAGTCTAAGATTAGATCAGACTGAGGGCTG-CAGCAGCAGGATCAACAGCA
705 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGA-CAGCAGGATCGGCAGCA
* * * * ** * *
20142970 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCCCGCCCCCCTGGCCGATTGAGCGCCCG
769 CGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCGCCTG
* * *
20143035 TATGCTCATTTCGT-GG--G--TT--G---AC------C--T---AG-----
834 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
20143061 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
*
20143126 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCAGAGTATTGCCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT-GATC---G---T--C-G-G
* * * * *
20143190 AATCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGTCGGGGGCTGTGCGCACATGATGT-
120 -A---GA-C--CGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
20143254 CTGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCA
178 C-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
20143319 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAT
242 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20143384 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
307 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * *
20143449 GAACATGCCAACAGAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCGAAAA
372 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * * *
20143514 GATTTTAAAAAATCTTGAACCTCAAAAAGTTTTAAAAATCGTGAAAAATAGAGAACGAGTCGTCT
437 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * ** *
20143579 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACACCCCATAAAAATGAC
502 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
20143644 ATTGGCACGTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
567 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * *
20143709 GTATCTTGTCTCTCTGGCCGGCGTAGTGCCCGCACGCCCGCCCGCCCGCTCATTTCATCGGTTGG
632 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
20143774 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGCCAAACTGAGGGTTATGACAGCAGGAT
696 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGAT
* * * * * *
20143839 CGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCTTCTAGCCAGCTA
761 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTA
* * *
20143904 AGCGCCTACACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
826 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
20143964 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
20144029 CTCGGGCATGTGCTGGTGCCGCATTTTTCCTCGTCGGGGCA-C-T-ATCGTC-G-GA-CGGTATT
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATGATCGTCGGAGACCGGTATT
* * *
20144088 GGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACAT
131 GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
20144153 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATT
196 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
20144217 TGAGTTTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAA
261 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * **
20144282 TAGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGTGTGCCAACAAAAATA
326 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
20144347 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
391 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * *
20144412 CTGTAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTG
456 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
**
20144477 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACCCAGAAATATG
521 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* *
20144542 AAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCC
586 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * * * *
20144607 GACGTAGTG--C-CTGCCTGCTCGCCCGATCGTTTCATCGGTTGGCCTAGGCATATGGAGTTCAT
651 GGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * * * * * * * *
20144669 TCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAGCATGATCGGTAGTACGCAAAGAGAGA
716 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * *
20144734 CCCGACTGATCCCCGGC-TAGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCTGCACGCTTGTTT
781 CCCGACCGATCCCCGGCTTA-CGCATCCCGCCCCTCTGGCCGGCTAAGCGCCTGCACGCTCGTTT
* * * *
20144798 CATTGGTTGACTTAGACATACGAAGTTCATTCCTAGTCTAA
845 CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
20144839 GCACACGGAGTTAATTCCCAGTCTAAGATTC-AACCAGACCGAGGGTTACAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCGGACCGAGGGTTACGGCAGCACATGCTGG
* *
20144903 GCTCGGGCATGAGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCG-CTGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT-------G-ATCGTC-GGA
* * * * * * * *
20144967 GAACCTGATTAGCGGTAATGGGGTTCTGGCGATCAGGGGAGCCAGGGTGGTGTCCGCACATAATG
121 G-A-C-------CGGTATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* * * *
20145032 TGTGGTGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
176 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
20145097 ACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
241 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
20145162 ATGGGGACACTTGTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGATTAATTTTTT
306 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
20145227 TGTGCGTGCCAACAAAAAAACAAGGACCACCTCTACCAAGTTTGGGGCCAAAA-TGCCTTCCGAA
371 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAA
* *
20145291 TAAATTTTAAAAAATCCC-ATACCGTAAAACA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTC
435 AAAATTTTAAAAAATCCCGA-ACCGCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
20145354 GTCTTGCCATAAAACTTCACATAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
498 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
20145419 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGC
563 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
20145484 TTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCACTCACCCGCTCGCTCGTTTCG
628 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG--C-C-CGCCCGCCCGCTCGTTTCG
* ** * ** * **
20145549 TTGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCTGACC-GAACCAATGGTTGCAA
688 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGA
* * * *
20145613 CAGCAGGATCGGCAGCATGCAAAGGGGGACCC-AGCCGATCCCTGGCTTACGCATCCTGCCCCTC
752 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTACGCATCCCGCCCCTC
* *
20145677 TGGCCTGCTGAA-CACCTGCACGCTCGTTTCGTGGGTTGAC-T-----T--G--G----TTCCCA
816 TGGCCGGCT-AAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
20145727 GTCTAA
880 GTCTAA
* * * ** **
20145733 GTATATGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** *
20145798 CTCCGGCATGTGCTGGTGTTACATTTTTCTTCATCGGGGCACCATCGTCGGAGCGTCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---T--GA---TCGTC-G-G-
* * *
20145863 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCC-GGGGG-GTGCGCACATGATGTGG
120 A---GA-C--CGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
**
20145926 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCGGCTATCCCTCATCAAACCTCGAGAACTCACA
179 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
20145991 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAATT
244 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
20146056 GGAACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
309 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * **
20146121 GCATG-CGACAAAAAATACAAGGATCACGTCTACCACGTTTGGGGCCAAAACTCCTTCTAAAAAA
374 GCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
20146185 ATTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
438 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* **
20146250 GCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCA
503 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
20146315 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCTGCCTACCATCCTATCGATCCACGGCTTGCG
568 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * * * * *
20146380 CATCCCGTCTCTCCAGCCGGTGTAGTG--C-CCGCCCGCTCGCGCACTCATTTTGTCGGTTGCCT
633 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * ** **
20146442 TAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGA-TCGAGGGTTGCGGTAATAGGATC
698 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGTGACAGCAGGATC
* *
20146506 GGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGTTGA
762 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCT-A
20146571 A-CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAA
826 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * *
20146630 G-AT-C--AG---------A--C-----T------GGACCGAGGGTTACGGCAACGCATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* **
20146669 CTCCGGCATGTGCT-GTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---T--GA---TCGTC-G-G-
*
20146733 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
120 A---GA-C--CGGTATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
20146797 CGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAATTCAC
178 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
20146862 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
243 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
20146927 GGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
308 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
20146992 TGCATGACAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAAATCCTTTCG-AAAA
373 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
20147056 ATTTTAAAAAATCTCGAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
438 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
20147121 GCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
503 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
20147186 TTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCGCGGCTTGCT
568 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * * *
20147251 TATCCCATCTTTCTGTCCGACGTAGTACCCACCCGCCCGCCCGCCCTCTCGATTCGTCGGTTGGC
633 CATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
20147316 TTAGGCATACGGAGTTCATTCCAAATCTAAGATCAGACCAGACCGAGGGTTGCGATAGCA-CATG
697 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGAT-
* * ** ** * * *** ***
20147380 CTGG--GCTCGGGCATGTGCTGGTGCCGCATTTTTC-ATCACCGGGGAAC-CAT--CG--CCGGA
761 C-GGCAGCAC--GCA-GAGGGGGACCCG-A----CCGATCCCCGGCTTACGCATCCCGCCCCTCT
** * * * * * *
20147437 GAAC--CTGACCGCCCGCA-GCTCGTTTCGTGAGTTGATTTAGGCTTACGAAGTTCATTCCCAGT
817 GGCCGGCTAAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
20147499 CTAA
882 CTAA
* * * * * * * * *
20147503 GCATACAGAGTTCATTCCTAGTGTAAGATCGGGCCAGATCGAGGGTTGCGGCAGTATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * **
20147568 CTCAGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATAGCCGAAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT-------G-ATCGTCG--G-
* * *
20147633 ACCTGACCGGTGGCATTAGGGGTTCCAACGACCGGGGGGGCCGGGAGGTGTGCGCACATGATGTG
120 A---GACCGGT---ATT-GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
20147698 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCTTCATCAAACCTCGACAACTCAC
178 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
20147763 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCAATTAAAGTGTCTGAAAT
243 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
20147828 GGGGACACTTTTTTCAAATGGTCATAAAATATTGTACACTTCGAGTTTTTAGCTCAATTTTTTTA
308 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
20147893 TGCATGCCAACAAAAATAGAAGGATCACATCTACCACA-TTTGCGGCTAAAACTCTTTCCGAAAA
373 TGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
20147957 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAATTTGTGAAAAATAAAAAACGAGTCCTCT
437 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
20148022 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
502 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
20148087 ATTGTCA-TTCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCATGGCTTG
567 ATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * *
20148151 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGTCCTTCCGTCCGCCCGCTCGTTTCGTCAGTTG
631 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * ** * * *
20148216 GCTTAGGCATACGGAGTTAATTCGCAGTCTAAGATTTGATCAGA-TCGATGGTTG-CAGCAGCAG
695 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGTGA-CAGCAG
* * * * * *
20148279 GATCGACAGCACGCAGAGGGGGACCCGACCGATCTCTGGCTTACGCATCCCG-TCCTTTCGGTCG
758 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCT-GGCCG
* *
20148343 GCTAAGCGCCCT-TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
822 GCTAAGCG-CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
20148407 G-AT-C--CG---A----C---C---GA----ACC--A---AGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * **
20148446 CTAGGGCTTGTGCTGGTGTTACATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGCGGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT-GATC---G--T--C--G-G
* * * * *
20148510 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGAGGGTGTGCGCACAAGATGTC
120 -A---GA-C--CGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
**
20148575 CGATGGGTGCTGGTACTCAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
178 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
20148640 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCCGAAAT
243 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
20148705 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTG
308 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
20148770 TACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
373 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
20148835 ATTTTAAAATATTCAGAACCGCAAAAA-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
438 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * **
20148899 GACATTAAACTTCACGCAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
503 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
20148964 TTGGCAAGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTG
568 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
20149029 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCACCCTCTCGTTTCGTCGGTTGGC
633 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
20149094 TTAGACATACGGAGTTCATTCCCTGTCTAAGATCACACCAGACCGATGGTTG-CAGCAGCAGGAT
697 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGA-CAGCAGGAT
** * * * *
20149158 CAACAGCATGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCGCTGGCCGGCTA
761 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTA
* * * * * *
20149223 AACGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
826 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
20149283 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGA-GGCAGTAGGAT-C-G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-ACGGCAGCA-CATGCTG
* * ** *** * * * ** * *
20149345 GCAGCAC--ACAAATG--GG-GACC-CGATCGATCTCCAG-CTTGCGCATCCCA--CCCCTAGG-
64 G--GCTCGGGCATGTGCTGGTG-CCAC-ATTTTTCTTC-GTC-GGGGCA--CCATGATCGTCGGA
* * * * *** * * * * *
20149400 G-CC-G-ACTGAGCG-CCCGTACGCTC----GTTTCGTGGGTTGACTTAG-GCATACGGA-GTTC
121 GACCGGTATTG-GGGTTCCG-ACGATCGGGGGGGCCGGGGGGTG---T-GCGCACA-TGATGTGC
** * * * *** * * **
20149455 -ATTCCCAGT-CTAAGCATAC--GG--ATT-TCATT--CCCAGTCTA-GAATCAGACCAGACCAA
179 GA-T--GGGTGCT--G-GTACTTGGCCCTTAT-ATTGGCCC--CCTATCCCTC--ATCAAACCTC
* ** * *** **** * * * * * ** * * * *
20149510 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG-GTGT-CGAATTTTTCTTCACCG-AGG
233 GAG-AAC-TCA-CACCCCCT--TAAAGAGCATTTG-AGATTTTAC-AGGTTTGCTGC-CAGTAGC
** * * * ** *** * * *** *
20149572 CA--CCA-TCGCCGGAGCATCGTCGGAGAACCTGACCGTCGGCATTAGGGTTC-CGGGGATCTAG
290 CATTAAAGT-GTCTGA-AAT-G--GG-G-A-C--ACTTTTTTCA-AATGG-TCAC-AAAATCTTG
**** * ** * * ** ** *** * ** *
20149633 --GGGGTCGGGGGGTGT-G-TGCA-CATGATGTGCAATGGGTACTGGAACTTGGCCCTTATATTG
342 TACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAAC--AAAAAT---AC--A-A--G
** * * * ** * ** * * * * * ***
20149693 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCT-CTT---AAAGAGCATTTGAGATTTTA
395 GATCAC-GT--CT-A-CCAAGTTTG-GGGC-CAAAACTCCTTCCGAAA-A-AATTTTAAAAAAT-
** ** * * ** * ** *** * * ** * * *
20149754 CAGGTTTGCTGCTAGTAGCCATT-AAAGTGTC-TG-AAAGGGGGACACTTGT-TTCAAATGGTCA
450 CCCG--AACCGCAAAAAG--TTTCAAA-AATCGTGAAAAATAGAAAACGAGTCGTC---TTGCCA
** * ** * *** * ** ** * *
20149815 CAAAATCTTGTACACTTCG-AGTTTTAAGATGAATTTTTTTATG-CGTGCCAA--CAAAAAACAA
507 TGAAA-C-T-T-CACGT-GAAGGCTTAAG--GGACCATTGTATGAATTTACAAGCCATAAAA-AT
*** * * ** * * ** * ** *** * *
20149876 GG-ATCACCTC-TACCAGGTTTG--G--G-GCCAAAATGCCTTCCGAATAAATTTTCAAAAATCC
564 GGCATTGGCACGTA-GAAATATGAAGATGTGCCTAAA--CCCACCTACCACCCTATC---GAT-C
* *** * ****** *** * ***** ** * **
20149934 CAC--CGT-AAAAT---GTTTCAAAAATCGTGAAAAATAAAAAACCAG-CCGTCTTGCCATGAAA
622 CACGGCTTGCGCATCCCGTCTCTCTGGCCG-GCGTAGT-GCCCGCC-GCCCG-CCCGCC-CG-CT
* * * * * ** * * * * * **
20149992 C--TTC-AC-ATAAAGGCTTAAGGGACCAT-TGTA-TGAATTTACAAGCCTTAAAAAT-GGCATT
681 CGTTTCGTCGGT--TGGCTT-A-GG--CATACGGAGTTCA-TTCCCAGTC-T-AAGATCAG-ACC
* *** * * * * ****** * * *
20150050 GGCAC-GTAGAAATATGA-AG-ATG-T-GCCTA-AAC-CTA-CCTACCACCCTATCGATCCACGG
736 AG-ACTG-AGGGTTGTGACAGCAGGATCGGC-AGCACGC-AGAGGGGGACCCGACCGATCCCCGG
* * * * * * * *
20150107 CTTGCGCATCCCGTCTCTTTGGCCGGTGTAGTGCCCGTCCGTCCGCCCGCTCGTTTCGTCGGTTG
797 CTTACGCATCCCGCCCCTCTGGCCGG-CTA-AG--CG-CC-T--GCACGCTCGTTTCGTGGGTTG
* * *
20150172 GCTTAGGCATACGGAGTTCATTCCCAGTCCAA
854 ACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
20150204 GATCAGACCAGACCGATGGTTGCA-ACAGCAGGATCAACAGCA-CGTAGAGCGGGACCCG-GCCG
1 G--CATA-C-G---GA--GTT-CATTC-CCA-G-TCTA-AG-ATCG--GA-CCGGA-CCGAG--G
* ** * * * * ** * * * * **
20150266 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCA-GT--TGAGAGCCTGTACGCTCGTTTCATGGG
45 GT-TACGGC-AGCACATGCTG-GGCTC-GGGCATGTGCTG-GTGCC---AC-AT-TTTTC-TTCG
* * * * * * * ** ** * *
20150328 TTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCGAAT-CTAAGAT
99 TCG----GGGC--AC-CA--TGA-T--C-GTC---GGAGACCG-G-T-ATTGGGGTTCCGACGAT
** * ** * * * * * *
20150392 CGGACCGGACCAAGGGTTACGAT-AGCACATGCTGGGCTCGGGCATGTGCTGCTGTCGTA-TT-T
145 CGG-GGGGGCCGGGGGGT--G-TGCGCACATGAT--G-T-GCG-ATG-GGTGCTG--GTACTTGG
** * ** * * ** * * * * ** * **
20150454 TTCTTCGT-CGGGGCACC-ATCGCCAGAGC-ATCGC-CGTAGAACCTGATCGGCAGCATTAGGGT
198 CCCTT-ATATTGGCCCCCTATC-CCTCATCAAAC-CTCG-AGAA-CTCA-C-ACCCCCTTAAAG-
* ** * ******** * * * ****
20150515 TCCGGCGATCGGGGGGGCCGGGGGGTGTGC-GCACATGATGTGCGATGGGTGCTGGTCTTGGCCC
255 ---AGC-AT-TTGAGATTTTACAGGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-GTC-T-G---
* * ** * ** ** * *** * * **
20150579 TTATATTGGCCCCCTATCCCTCATCAAA-CCTCA-AGAA-CTCACACCCCGTTAAAGAGCATTT-
304 --AAATGGGGACACT-T---TTTTCAAATGGTCACAAAATCTTGTA-CAC-TT--CGAGTTTTTA
* * ** * * * * **
20150640 -CAGATTTTATAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCA
359 GCTGAATTT-T---TTTG-TG-CA-T-GCCAACAAAAAT-AC---AA---GGATCACGTCTACCA
* ** *
20150702 A--AT-GGGCTCAAAATCTTGTATACTTCGATTTTTTAGTTGAATATTTTTGTACATGCCAACAA
409 AGTTTGGGGC-CAAAA-CTCCT-T-C--CGA------A----AA-A--ATT-T---T----A-AA
** * ** *
20150764 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATC
446 AAAT-C-CCGAAC-CG-C-AAAAAGTTT-----CAAAAAT-CGT--G--AA--------------
20150829 CTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
482 ---------------------AAA----------TAGAAAACGAGTCGTCTTGCCATGAAACTTC
20150894 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
516 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
**
20150959 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCATGTCTCTC
581 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
20151024 TAGCCGGCGTAGTCCTCGCCCGTCGACCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATA
646 TGGCCGGCGTAG---T-GCCCGCCG-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** *
20151089 CGGAGTTCATTCCCAGTCTAAGATCAGACC-GGTTAGAGGGTTGCTG--AGCAGGATCGGTAGCA
706 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTG-TGACAGCAGGATCGGCAGCA
* * * * * * * * *
20151151 TGCAGAGCGGGACCCGGCCGATCCCTGGCTTGCGCATCCCACCCTTCTGGCCGGCTGAGCGCCCG
769 CGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCGCCTG
* * * *
20151216 CACGTTCGTTTCATGGTTTAGA-TTAGGCATAC-AGAGTTCATTCCTAGTCTAA
834 CACGCTCGTTTCGTGGGTT-GACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * ** * *
20151268 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGATTGTGACAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** **
20151333 CTCGGGGATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA----T---G-ATCGTCGGAG-
* * * *
20151398 ACCTTACTGGCGGCATTGAGGTTCC-AGCGATC-GGGGGGCCGGGGGGGTCTACGCACATGATGT
122 -----AC---CGGTATTGGGGTTCCGA-CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
20151461 GGGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
177 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
20151526 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTCAAGTGTCTAAAA
242 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
20151591 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
307 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
20151656 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTAGGGCCAAAAGTCCTTCCGAAAA
372 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
20151721 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCT
437 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
20151786 CGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGCATGATTTTACAAGCTC-TAAAAATGG
502 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGG
* * *
20151850 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTG
566 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
20151915 CGCAACCCGTCTCTCTGGCCGACGTAGTG--C-CCGCCTGCCCGCCCGCTTGTTTCATCAGTTGG
631 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** ** *
20151977 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAATCAGACTGAGGGTTACGGTAGTAGGAT
696 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGAT
* * * * * * *
20152042 TGAG-AGCATGTAGAGGGGGACTCGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCT
761 CG-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCT
* * * * * * * *
20152106 GAGTGCCCGCACGCTTGTGTCGTGGGTTGACTTTGGCATATGGAGTTCATTCCCAGTCTAA
825 AAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * * *
20152167 GCATACAGATTTCGTTCCCAGTCTAAGATCAGACTGGACCGAGGTTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
20152232 CTCGAGCATATGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---T----G-ATCGTC-G-GA
* * *
20152297 CCCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGGACATGATGTGC
121 ----GA-C--CGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
20152362 GATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
179 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
20152427 CCCCCTTAAAGAGCTTTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCAGAAATG
244 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
20152492 GGGAAACTTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
309 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
20152556 GCATGCCAAGAAAAATACAAGGATCACGTTTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAA
374 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** * * *
20152621 TTTTAAAAAATCTTGAATCGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAACGAGTCGACTTG
439 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
20152685 CCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
504 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
20152750 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCAGCCTATCGATCCACGGCTTGCGC
569 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
20152815 ATCCGGTCTCTCTGGCCGACGTAGTG--C-CCGCCCGTCTGCCCGTTCATTTCGTCAGTTGGCTT
634 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * *
20152877 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGG-T-T-ACAGCAGCACATG
699 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAG--GAT-
** * *
20152939 CTGG--GCTGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACC-ATCACCGG---A-GC
761 C-GGCAGC-ACGCA-GAG--GG-G--G-A-----C--C--C---G-ACCGATCCCCGGCTTACGC
** * ** * * *** *** * *
20152997 ATCGCCGGAGAACCTGATCGG-CGGCATTGGGGTTCCTACGATCGGGGGACCCGGAGGGGTG--T
804 ATC-CC---GCCCCT-CT-GGCCGGC-TAAGCG--CCTGC-A-CGCTCGTTTC-GTGGGTTGACT
* * * ** *
20153059 GT-GGACAT--GATGTGCGATGGGTGCTGGTACTTGAC
857 -TAGG-CATACGAAGTTC-AT---TCCCAGT-C-T-AA
* * **** * * ** ** ** *** ** *
20153094 CCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCAAAAACTCACACC--CCCTTAAAG-AGCAT
1 GC--ATA-CGGAGTTC-ATTCC-CAGTCTAAGATC--GGAC-CGGACCGAGGGTTACGGCAGCAC
* * *** * ** ** * ** * *** ** **
20153155 TTG-AGATTTTACAGGTTTGCTGCTACTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTC
58 ATGCTG-GGCT-CGGGCATG-TGCTGGT-GCCA--CATTTTTCT-TCGTCGGGG-CACCATGATC
* ** *** * * *** ****** * *****
20153218 AAGT-TGTCA-CAAAATCT--TGTACACTTTGAT-TTTTTAGCTGAATTTTTTTGTGCATGC-CA
115 --GTCGGAGACCGGTAT-TGGGGTTC-CGACGATCGGGGGGGCCG---GGGGGTGTGC--GCACA
* * * * * * * *** * ** ***** * *
20153277 AGAAAAGTAC-AAGGATCACAT-CTACCAAGTTTAGGGCCAAAATCTTTTCGAAAAAAT--TTTA
171 TG--ATGTGCGATGGGT-GC-TGGTA-C----TT--GGCCCTTATATTGGC-CCCCTATCCCTCA
** * * ***** * ** *** * *** * *
20153338 AAAAATCTCGA-ATCGT-A-AAAAGTTTCAAAAATAATGAAAAATAAAAAACGAG-TCGTCTCGC
224 TCAAACCTCGAGAAC-TCACACCCCCTT-AAAGAGCATTTGAGATTTTACA-G-GTTTG-CT-GC
* * *** * * * * * * *
20153399 CAAGAAACTTCACGCGAAG-G-CT-TAA--GGGAC-CATTGTATGAAATTACAAGCCATAAAAAT
283 C-AGTAGC--CA-TTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAA-T---GGTCA-CAAAAT
* * * * * ** *
20153458 GGCATTGGAATGGATTAGTCATATGGAGTTCATTCCCAGTCT-AA--GTTTAGACCGA-ACCGAA
338 --C-TT-G--T--A-CA--C-T-TCGAGTT--TT--TAG-CTGAATTTTTTTGTGC-ATGCC-AA
***** ** ** ** * * *
20153519 GGTTGTGATAGC-AGGATCGACAG-C-ACGTAG-AGGGGGACCCGACCGATCCCCAGCTTGCG-C
383 --CAAAAATA-CAAGGATC-AC-GTCTACCAAGTTTGGGG--CC-A---AAACTC--CTTCCGAA
*** * ***** * * * **** *** * * * ***
20153579 ATCCTGTCCCT-CTGGTTGGCTGAGTGACTGCACGCTCGTTTCGTGAGTTGACTTATGCATACGA
435 AAAAT-T--TTAAAAAAT-CCCGA---ACCGCA-AAAAGTTTCAAAAATCG--TGAAAAATA-GA
** * * * ** * * * * **
20153643 AGTTC-ATTCCCAGTCTAAGCATATCGAGTTCATTCCCAGTCTAA--CATCAGACTGGACCGAGG
489 A-AACGAGT--C-GTCT-TGC-CAT-GA-AAC-TTCAC-GT-GAAGGC-TTA-A-GGGACC-ATT
** ** * * * * ** *
20153705 GT-TG---TGGC-AGCACAT---TCTGGGC-TCGAGCATGT-G--CTGGTGCCGCAT-TTCTCTT
539 GTATGAATTTACAAGC-CATAAAAAT-GGCATTG-GCACGTAGAAAT-ATGAAG-ATGTGC-C-T
*** * * ** ** * ** * * ** *
20153757 CGTCGGGGCACC-ATCGTCGGAGC-ATCGTCGGAGAACTT--G-ATCGACGGCAT-TGGGGTTTC
597 AAAC---CCACCTACCACCCTATCGATCCAC-G-G--CTTGCGCATC-CCGTC-TCTCTGG--CC
* * ** *** ** * * * * *
20153816 GGCGATCGAGGGGCCGGGGGATGTGCGCAC-AT-GATGTGCAATGGGTGCTGGTACTT-GGCCCT
651 GGCG-T--AGTGCCCGCCGCCCGCCCGCCCGCTCG-T-TTC-GTCGGT--TGG--CTTAGG--C-
* **** * * ** * **** * *
20153878 TATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACAC---CCCCT-T-AAAG-AGAAT
703 -ATA-CGGAGTTC-ATTCC-CAGTCTAAGATC-AG-AC-CAGACTGAGGGTTGTGACAGCAGGAT
** ** *** ** * **** ** *** **
20153936 TTG-AG-ATTTTACA-ATTTTGCTCCCAATAGCC-ATTAAAGTG-TCTA-AAATGGGGAACTTTT
761 CGGCAGCA---CGCAGA-GGGGGACCC--GA-CCGATCCCCG-GCT-TACGCATCCCG--C--CC
* * * * * *** ** * * ** *** *
20153995 TTCAAATGGTC-ACAAAATCTTGTGCACTTTGAGTTTTTAGCTGATTTTTTTTTGTGCATGCCAA
813 CTC---TGGCCGGC-TAAGCGCCTGCACGCT-CG--TTTCG-TGGGTTGACTTAG-GCAT-----
** * * * *
20154059 AAAAAATACAAGGATCACA-TCTAA
864 ACGAAGTTC-A--TTCCCAGTCTAA
** ** * * * * * ** * *** **
20154083 -CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCATCACCGCAAAAAGTTTTA
1 GC-A---TACGG----AGTTCATTCC-----CAGTCT--AAGAT-C-GGACCGGACCGAGGGTTA
* *** ***** * * ** * * * ** **** *
20154147 ----A--AAATTG-TGAAAAATAAAAAACGAGTCATCTTGCCATGAATTTAC-AAG-C-CATAAA
49 CGGCAGCACA-TGCTG--GGCTCGGGCATGTG-C-TGGTGCCA-CATTTTTCTTCGTCGGGGCAC
* * * * * ** * * * * ******* *
20154202 AATG-GCATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCA
108 CATGATCGTCGG-A-GACCGGTAT-TG--G-GGTTCC--GA-CGA--T-CGGGGGGGCCG----G
* * * * ** * ** * * * * * **
20154265 CGGCT-TTCGTATCCCG-TCT-CTCTGGCTGGCGTAGTGACCGCCTGCCCACTCAT-TT---CAT
157 GGGGTGTGCGCA-CATGATGTGCGATGGGT-GC-TGGT-A---CTTGGCC-CTTATATTGGCCCC
* ** * * ** ** ** * ** * *
20154323 CGATTGGCTCAGGCATA--T-G-GAGTTCATTCCCAGTCT-AAGATCGGA-CCG-GA--CT-GAG
214 CTA-TCCCTCA-TCAAACCTCGAGAACTCACACCCCCT-TAAAGA--GCATTTGAGATTTTACAG
* * * * * * * * *** * *** **
20154378 GGTTGCGGCAACAGGATTGGCA--GAA-TG-C--AGAGGGGGACCCGATCGATCCCGGTCTTGCA
274 GTTTGCTGC--CA-G-TAGCCATTAAAGTGTCTGAAATGGGGACAC--TTTTTTCAAATGGT-CA
**** * * ** * *
20154437 CATCCCGCCCTTCTGGC-CGGCTGAGTTTTTGGCTGAATGTTTTTGTGCATGCCAACAAAAATAC
332 CA---AAATCTTGT-ACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* ** ** * *
20154501 AAGGATCATGTCTACCAAGTTTGGGGAGAAAACTAATTTCGAAAAAATTTTAAAAAATCTCGAAC
392 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * *
20154566 CGCAAAAAGTTTTC-AAAATCGTGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCATGTG
457 CGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
20154630 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAAG
521 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
20154695 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
586 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * ** * * * *
20154760 GGCGTAGT-------ACCCACCCGTCCGCTCGTTTAATCAGTCGGCTCAGGCATATGGAGTTCAT
651 GGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * ** * * **
20154818 TCCCAGTCTAAGATCAAACCGGATTGAGGGTTGCGGCAATAGGATTGGTAGCATACAGAGGGGGA
716 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAGGGGGA
** ** * * * * * *
20154883 CCCGGTCGATCCCCTTCTTGCGCATCCCGCCCCTCTGGCCGACTGAGAGCCCGCACGCTCGTTTT
781 CCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCGCCTGCACGCTCGTTTC
20154948 GTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAA
846 GTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * * * *
20154988 GCATATGGAGTTCATTCCCAGTTTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * *
20155053 CTCGGGCAAGTGCTGGTTTCGCATTTTTCTTCG-CTGGGGCACCATCGCCAGAGCATCGTTGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCAT-------G-ATCG-TCG-G
* * *
20155117 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCCCGCATGATGTG
120 -A---GA-C--CGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
20155182 CGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCAC
178 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
20155247 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
243 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* ** * *
20155312 GGGGACA-TTATTTTCGAATGGTCACAAAAAGTTGTACACTTCCAGTTTTTAGCTGACTTTTTTT
308 GGGGACACTT-TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
20155376 GTGCATACCAACAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
372 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
20155441 AATTTTAAAAAATCCCGAACCACAAAAAGTTTAAAAAATCGTGAAAAATAAAAAACAAGTCGTCT
437 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
20155506 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGGC
502 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * * *
20155571 ATTGGCATGCAGAAATATGAATG-TGAGTCTAAACCCACCAACCACCCTATCGATCTACGGCTTA
567 ATTGGCACGTAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * **
20155635 CGCATCCCGTCTCTATGGCCGGCATAGTG--C-CCGTCTGCCCGCCTACTCGTTTCGTCGGTTGG
631 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
20155697 CTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGAT
696 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGAT
* * * * *
20155762 CGGCAGTACGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTA
761 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTA
* * * *
20155827 AGCACCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
826 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * *
20155887 GCATACCGAGTTCATTCCTAGTGTAAGATCAGACCGGACCAAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * ** *
20155952 CTCGAGCGTGTGCTGGTGCTGA-ATTTTTCTTTGTCGGGGCACCATCG-TCGGAGAACCTGACCG
66 CTCGGGCATGTGCTGGTGC-CACATTTTTCTTCGTCGGGGCACCAT-GATCGTCGGA---GACC-
* * * * * *
20156015 GCGACATTGGGGTTTCGACGATCGGGGGGGCTGGGGGGTGTGCGCAGATGATGTGCGATGGTTGT
125 G-G-TATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
** * * * ***
20156080 TGGTACTTCACCCTTATGTTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACACTTGCTTAA
188 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
20156145 AGAGCATTTGAGATTTT-CAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
253 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
20156209 TTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCAAGCCAA
318 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
20156274 AAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAA
383 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** * * *
20156339 ATCCTTAACCGCAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTGGCCATGAAAC
448 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* **
20156404 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCACACA
513 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
*
20156469 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
578 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * *
20156534 CTCTGGCCGACGTAATGCCCGCCCGTCCGCCCGCCCGCTCATTTTGTCAGTTGGCTTAGGCATAC
643 CTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *
20156599 GGAGTGCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGAGGCAGCAGGATCGGTAGCATGC
707 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGC
* * * * * * * * * * *
20156664 AGACGGGGACTCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCGCCCGTAA
772 AGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCGCCTGCAC
*
20156729 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
20156778 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
** *
20156843 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-CGAGGGCACCATCGCTGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG-GGGCACCA----T---G-ATCGTC-G-G
* * * * *
20156907 AACCTGACCGACGGCATTGGGGTTCCGGCAATCGAGGGGGCCGAGGGGGGTGTGCGCACGTGATG
120 -A---GA-C--CGGTATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
* * **
20156972 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCGTTATCCCTCATCAAACCTCGAGAACTC
176 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
20157037 CCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAACGTTTCTGAA
241 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
20157102 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTCTAGCTGAATATTTT
306 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
20157167 TATGCATGCCAACAAAAATACAAAGATCATGTCTACCAAATTTGGGGCCAAAACTCCTTTCGAAA
371 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * *
20157232 AAATTTTTAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAATGAGTCGTC
436 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
20157297 TGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
501 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
20157362 CATTGGCACACAAAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTA
566 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
20157427 CGCATCCCGTCTCTCTTGCCGGCGTAGT-------GCCCGCCCGCCCGCTCGTTTTGTCGTTTGG
631 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
20157485 CTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCGGACTAGATTGAGGGTTGCGGCAGTAGGAT
696 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGAT
* * * * * *
20157550 CGGTAGCACACAGAGGGGGACCCGACCGATCCCAGGCTTACGTATCCCGCCCCTCTGGCCGGTTG
761 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTA
* *
20157615 AGCGCCCGTACGCTCGTTTCGT-GG--G---T--G-----G-A---C-TT---AG-----
826 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
20157649 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCTGCAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTG-G
* * *
20157714 G-TCGGGCATGTGCTGATGCCACATTTTTTTTCGTCGGGGCACCATCATCGGAGCATCACCAAAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATGATC---G--T---C---G
* * * * *
20157778 AACCTGACCGATGGCACTGGGGTTCCGGCGATCGGCGGGGCCGGGGGGTGTGCGCACATGATGTG
119 GA---GACC---GGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
20157843 CGATGGGTGCTGGTACTTGGCTCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCAC
178 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
20157908 ATCCCCTTAAATAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
243 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * * *
20157973 GGACACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTG
308 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
20158038 TGCATGCCAAAAAAAATACACGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
373 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * ** * *
20158103 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTT
438 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
20158168 GCCATGAAACTTCACCTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAGAAATGGCA
503 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
20158233 TTGGCATGCAGAAATATGGAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCA
568 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
20158298 CATCCCGTCTCTCTGG-C--C---G-G--CG--G---GCCCGTCTGCTCGTTTCGTCGGTTGGCT
633 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
**
20158349 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGT-------GG-T--
698 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGATCG
* ** * ** * * * * *
20158404 --AGCATGCAGAGGGGGACCCGGTCGATCCCCAGCTTGTGCATGCCACCCTTCTGGTCGGCTGAG
763 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAG
* * *
20158467 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
828 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
20158525 G-AT-C--AG---------A--C-----T------GGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
** * *
20158564 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCATCGGAGCATCACCGGACA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATGATC---G--T---CGG---
* ** * * * *
20158629 ACCTGACCGATGGCATTGGGG-TCCGACGATAAGCGGGGCTGGAGGGTGTGCGCACATGATGTGT
120 A---GACC---GGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
20158693 GATGGGTGCTGGTACTTCGCTCTTATATTGGGCCCCTATCCCTCATCAAACTTCGAGAACTCACA
179 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * *
20158758 CCCCCTTAAAGTGTATTTGAGATTTAACAGGTTTGCTGCCAGTAGCAACTAAAGTGTCTAAAATG
244 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
20158823 GGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
309 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
20158888 GCATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCTAAAAATCCTTTCAAAAAAA
374 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** * ** * * *
20158953 TTTTAAAAAATCTAGAACTGCAAAAAGTTTTGAAAATCCTGAAAAATAGATAACGAGTCGTCCTG
439 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
20159018 CCATGAAACTTCACGTGAAGGCTTAAGGGACCCTTGTATGAATTTACAAGCCATAAAAATGGCAT
504 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
20159083 TGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
569 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
20159148 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCC-CATCCACCTGCTCGCTCATTTTGTTGGTTAGC
634 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** * * * ** *
20159212 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAAGATC
697 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGATC
* * * * * * * * * *
20159277 AGTAGCACGTAGAGGGGGACTCGACTGGTCCCCGACTTGCGCATCCCGCCCCTCTGGCAGGCTGA
762 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAA
** *
20159342 GCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAA
827 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * * * * * *
20159401 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAACGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** * *
20159466 CTTGAGCATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCATCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA-C--CAT----G-ATCGTCGGAG-
* * * * *
20159531 ACCTGACCGATGGCATTGGGG-TCCGGCGATCAGCGGGGTCGGGGGGTGTGCGCACATGATGTGT
122 ACC-G---G-T---ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
20159595 GATGGGTGCTGGTACTTCGCTCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
179 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
20159660 CCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATG
244 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
20159725 GGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGC
309 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
20159790 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTTCGAAAAAA
374 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * * *
20159855 ATTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAAA-CGTGAAAAATAGAGAACGAGTCATCTT
439 TTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * *
20159919 GCCATTAAACTTCACGTGATGGCTTCAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGAA
503 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
20159984 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTAG
568 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
20160049 CATCCCATCTCTTTAGCCGGCGTAGTGCCCGCCCACACGCCTGCCCGCCCGCTCGTTTCGTCGGT
633 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----C-CGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * ** *
20160114 TGGCTTAGGCATACGGAGTTCCTTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-ACAGTAGCA
693 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGA-CAGCA
* * * * *
20160178 GGATCAGCAGCACGTAGAGGGGGACCC-AGCCTATCCCCAGCTTACGCATTCCGCCCCTCTGGCC
757 GGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCC
** * * * * *
20160242 AACTGAGGGCC-GTACGCTCGTTTTGTTGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTA
821 GGCTAAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTA
20160305 A
885 A
* * * * *
20160306 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGC-GCTAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGC-AGCACATGCTGG
* * * *
20160370 GCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGAGGCACCATCGTCGTGGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA------T-G-ATCGTC-G-G
* *
20160435 AACCTGACCGACGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGCGGTGTGCGCACATGATGT
120 -A---GA-C--CGGTATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
** *
20160499 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTGTATCCATCATCAAACCTCGAGAACTCA
177 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
20160564 CACGCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCT
242 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
20160625 TGTACACTTC
Statistics
Matches: 13353, Mismatches: 2895, Indels: 2587
0.71 0.15 0.14
Matches are distributed among these distances:
847 1 0.00
849 465 0.03
850 172 0.01
851 2 0.00
853 1 0.00
854 1 0.00
855 5 0.00
856 4 0.00
857 3 0.00
858 4 0.00
860 2 0.00
861 21 0.00
862 76 0.01
863 73 0.01
864 68 0.01
865 2 0.00
866 3 0.00
867 2 0.00
868 5 0.00
869 452 0.03
870 80 0.01
871 376 0.03
872 257 0.02
873 52 0.00
874 20 0.00
875 360 0.03
876 490 0.04
877 947 0.07
878 93 0.01
879 402 0.03
880 138 0.01
881 19 0.00
882 8 0.00
883 172 0.01
884 12 0.00
885 25 0.00
886 9 0.00
887 359 0.03
888 136 0.01
889 16 0.00
890 21 0.00
891 754 0.06
892 24 0.00
893 34 0.00
894 153 0.01
895 294 0.02
896 43 0.00
897 453 0.03
898 272 0.02
899 799 0.06
900 475 0.04
901 286 0.02
902 907 0.07
903 135 0.01
904 164 0.01
905 527 0.04
906 465 0.03
907 18 0.00
908 153 0.01
909 14 0.00
910 28 0.00
911 17 0.00
912 41 0.00
913 53 0.00
914 18 0.00
915 25 0.00
916 37 0.00
917 33 0.00
918 21 0.00
919 6 0.00
920 16 0.00
921 56 0.00
922 16 0.00
923 17 0.00
924 28 0.00
925 13 0.00
926 15 0.00
927 9 0.00
928 6 0.00
929 11 0.00
930 23 0.00
931 38 0.00
932 29 0.00
933 23 0.00
934 21 0.00
935 4 0.00
936 15 0.00
937 15 0.00
938 7 0.00
939 2 0.00
940 6 0.00
941 8 0.00
942 2 0.00
943 6 0.00
944 21 0.00
945 5 0.00
946 17 0.00
947 19 0.00
948 11 0.00
949 16 0.00
950 11 0.00
951 14 0.00
952 4 0.00
953 14 0.00
954 4 0.00
955 14 0.00
956 26 0.00
957 5 0.00
958 6 0.00
959 9 0.00
961 11 0.00
962 6 0.00
963 8 0.00
964 9 0.00
965 8 0.00
966 8 0.00
967 2 0.00
968 3 0.00
969 11 0.00
970 7 0.00
971 18 0.00
972 12 0.00
973 9 0.00
974 15 0.00
975 11 0.00
976 10 0.00
977 13 0.00
978 19 0.00
979 24 0.00
980 13 0.00
981 30 0.00
982 28 0.00
983 13 0.00
984 18 0.00
985 14 0.00
986 22 0.00
987 20 0.00
988 14 0.00
989 18 0.00
990 26 0.00
991 23 0.00
992 17 0.00
993 21 0.00
994 21 0.00
995 18 0.00
996 30 0.00
997 26 0.00
998 19 0.00
999 21 0.00
1000 24 0.00
1001 11 0.00
1002 14 0.00
1003 11 0.00
1004 12 0.00
1005 6 0.00
1006 6 0.00
1007 9 0.00
1013 1 0.00
1014 5 0.00
1015 8 0.00
1016 9 0.00
1017 3 0.00
1018 1 0.00
1019 9 0.00
1020 4 0.00
1021 6 0.00
1022 1 0.00
1024 452 0.03
1025 627 0.05
1026 698 0.05
1027 718 0.05
1028 587 0.04
1029 716 0.05
1030 598 0.04
1031 550 0.04
1032 584 0.04
1033 529 0.04
1034 424 0.03
1035 486 0.04
1036 574 0.04
1037 522 0.04
1038 417 0.03
1039 487 0.04
1040 490 0.04
1041 367 0.03
1042 484 0.04
1043 417 0.03
1044 350 0.03
1045 389 0.03
1046 354 0.03
1047 324 0.02
1048 582 0.04
1049 242 0.02
1050 456 0.03
1051 343 0.03
1052 410 0.03
1053 211 0.02
1054 263 0.02
1055 562 0.04
1056 295 0.02
1057 255 0.02
1058 249 0.02
1059 320 0.02
1060 396 0.03
1061 293 0.02
1062 215 0.02
1063 260 0.02
1064 217 0.02
1065 261 0.02
1066 292 0.02
1067 246 0.02
1068 294 0.02
1069 254 0.02
1070 165 0.01
1071 253 0.02
1072 449 0.03
1073 134 0.01
1074 140 0.01
1075 138 0.01
1076 136 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATGATCGTCGGAGACCGGTATT
GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAGGGGGA
CCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCGCCTGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:20149287 original size:26 final size:26
Alignment explanation
Indices: 20149257--20149309 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20149247 GTTGACTTAG
20149257 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
20149283 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
20149309 G
1 G
20149310 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:20149423 original size:185 final size:185
Alignment explanation
Indices: 20149099--20149523 Score: 530
Period size: 185 Copynumber: 2.3 Consensus size: 185
20149089 TTGGCTTAGA
* *
20149099 CATACGGAGTTCATTCCCTGTCTAAGATCACACCAGACCGATGGTTGCAGCAGCAGGATCAACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCACACCAGACCGAGGGTTGCAGCAGCAGGATCAACAG
** * * * ** *
20149164 CATGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCGCTGGCCGGCTAAACGCC
66 CACACAAAGGGGGACCCAACCGATCCCCAGCTTGCGCATCCCACCCCGAGGGCCGACTAAACGCC
20149229 CGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAG
131 CGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAG
** * * * **
20149284 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTG-AGGCAGTAGGATCGGCA
1 CATACGGAGTTCATTCCCAGTCTAAGATCACACCAGACCGAGGGTTGCA-GCAGCAGGATCAACA
* * * * * * *
20149348 GCACACAAATGGGGACCCGATCGATCTCCAGCTTGCGCATCCCACCCCTAGGGCCGACTGAGCGC
65 GCACACAAAGGGGGACCCAACCGATCCCCAGCTTGCGCATCCCACCCCGAGGGCCGACTAAACGC
* * * *
20149413 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
130 CCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAG
* * * *
20149469 CATACGGATTTCATTCCCAGTCT-AGAATCAGACCAGACCAAGGGTTGCGGCAGCA
1 CATACGGAGTTCATTCCCAGTCTAAG-ATCACACCAGACCGAGGGTTGCAGCAGCA
20149524 CATGCTGGGC
Statistics
Matches: 202, Mismatches: 35, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
184 3 0.01
185 199 0.99
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (185 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCACACCAGACCGAGGGTTGCAGCAGCAGGATCAACAG
CACACAAAGGGGGACCCAACCGATCCCCAGCTTGCGCATCCCACCCCGAGGGCCGACTAAACGCC
CGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAG
Found at i:20149471 original size:26 final size:26
Alignment explanation
Indices: 20149442--20149492 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20149432 GTTGACTTAG
20149442 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20149468 GCATACGGATTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
20149493 GAATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20150387 original size:26 final size:26
Alignment explanation
Indices: 20150337--20150389 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20150327 GTTGAATTAG
*
20150337 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
20150363 GCATACGGAGTTCATTTCGAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20150389 G
1 G
20150390 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20151272 original size:26 final size:26
Alignment explanation
Indices: 20151242--20151294 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20151232 TTTAGATTAG
*
20151242 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20151268 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20151294 G
1 G
20151295 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20151678 original size:906 final size:900
Alignment explanation
Indices: 20149283--20160624 Score: 7599
Period size: 905 Copynumber: 12.6 Consensus size: 900
20149273 CCCAGCCTAA
* * *
20149283 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGAGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * ** *
20149348 GCACACAAATG-GGGACCCGATCGATCTCCAGCTTGCGCATCCCACCCCTAGGGCCGACTGAGCG
66 GCACGCAGA-GCGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
* *
20149412 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
20149477 TTTCATTCCCAGTCT-AGAATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
195 GTTCATTCCCAGTCTAAG-ATCAGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGCA
* * * *
20149541 TGTGCTGGTGTCGAATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
259 TGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACC
* * ** * * * *
20149606 GTCGGCATTAGGGTTCCGGGGATCTAGGGGGTCGGGGGGTGTGTGCACATGATGTGCAATGGGTA
324 GGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
20149671 CTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCTCTTA
389 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
20149735 AAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAGGGGGACACT
454 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* * * * *
20149800 TGTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGATGAATTTTTTTATGCGTGCCA
519 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
20149865 ACAAAAA-ACAAGGATCACCTCTACCAGGTTTGGGGCC-AAAATGCCTTCCGAATAAATTTTCAA
584 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTTAAA
* * * * *
20149928 AAATCC--CACCGTAAAATGTTTCAAAAATCGTGAAAAATAAAAAACCAGCCGTCTTGCCATGAA
648 AAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
20149991 ACTTCACATAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCACG
713 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
20150056 TAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
778 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* ** * *
20150121 CTCTTTGGCCGGTGTAGTGCCCGTCCGTCCGCCCGC-TCGTTTCGTCGGTTGGCTTAG
843 CTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTTCGTTTCGTCAGTTGGCTTAG
* * * * ** **
20150178 GCATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACCGATGGTTGCAACAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
20150243 GCACGTAGAGCGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGTTGAGAGC
66 GCACGCAGAGCGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * *
20150308 CTGTACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
20150373 TTCATTTCGAATCTAAGATCGGACCGGACCAAGGGTTACGATAGCACATGCTGGGCTCGGGCATG
196 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGCATG
* ** * *
20150438 TGCTGCTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGTAGAACCTGATCGG
261 TGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGG
*
20150503 CAGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
326 CGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
20150568 GGT-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCGTTAAA
391 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
20150632 GAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
456 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
* * * * * * *
20150697 TTTCAAATGGGCTCAAAATCTTGTATACTTCGATTTTTTAGTTGAATATTTTTGTACATGCCAAC
521 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
20150762 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAAA
586 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
*
20150827 TCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
651 TCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
20150892 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
716 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
**
20150957 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCATGTCTC
781 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
20151022 TCTAGCCGGCGTAGT-CCTCGCCCGTCGACCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAG
846 TCTGGCCGACGTAGTGCC-CGCCCGT----CCGCCCG-CT--TCGTTTCGTCAGTTGGCTTAG
* * * *
20151084 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGTTAGAGGGTTGCTG-AGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
20151148 GCATGCAGAGCGGGACCCGGCCGATCCCTGGCTTGCGCATCCCACCCTTCTGGCCGGCTGAGCGC
66 GCACGCAGAGCGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * * *
20151213 CCGCACGTTCGTTTCATGGTTTAGA-TTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGA
131 CCGCACGCTCGTTTCATGGGTT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * ** * *
20151277 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGATTGTGACAGCAAATGCTGGGCTCGGGGAT
195 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGCAT
* * * *
20151342 GTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCTAGAGCATCGTCGGAGAACCTTACTG
260 GTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCG
* * * *
20151407 GCGGCATT-GAGGTTCCAGCGATC-GGGGGGCCGGGGGGGTCTACGCACATGATGTGGGATGGGT
325 GCGGCATTAG-GGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
*
20151470 GCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
388 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
20151535 AAAGAGCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTCAAGTGTCTAAAATGGGGACAC
453 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
20151600 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
518 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
20151665 AACAAAAATACAAGGATCACGTCTACCAAGGTTAGGGCCAAAAGTCCTTCCGAAAAAATTTTAAA
583 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
* *
20151730 AAAT-CTCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTCGCCATGA
648 AAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
20151794 AACTTCACGTGAATGCTTAAGGGACCATTGCATGATTTTACAAGCTC-TAAAAATGGCATTGGCA
712 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGGCATTGGCA
* * * *
20151858 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTGCGCAACCC
776 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
20151923 GTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTT-GTTTCATCAGTTGGCTTAG
841 GTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTTCGTTTCGTCAGTTGGCTTAG
* * * * * * * *
20151982 GCATATGGAGTTCATTCCCAGTCTAAGATCAAATCAGA-CTGAGGGTTACGGTAGTAGGATTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCG-G
* * * * * * * *
20152046 -AGCATGTAGAGGGGGACTCGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGT
64 CAGCACGCAGAGCGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGC
* * * * * *
20152110 GCCCGCACGCTTGTGTCGTGGGTTGACTTTGGCATATGGAGTTCATTCCCAGTCTAAGCATACAG
129 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * ** * * * * *
20152175 ATTTCGTTCCCAGTCTAAGATCAGACTGGACCGAGGTTTACGGCAGCACATGCTAGGCTCGAGCA
194 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGCA
* * * *** * * *
20152240 TATGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGCCGGAGACCCTGACC
259 TGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACC
* * * * *
20152305 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGGACATGATGTGCGATGGGTG
324 GGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
20152370 CTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
389 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
20152435 AAGAGCTTTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTC-AGAAATGGGGAAAC
454 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AAATGGGGACAC
*
20152499 TTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCC
518 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
20152563 AAGAAAAATACAAGGATCACGTTTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
583 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
* * *
20152628 AAATCTTGAATCGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAACGAGTCGACTTGCCATGAA
648 AAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
20152692 ACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
713 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
20152757 CAGAAATATGAAGATGTGCCTAAACCCACCAACCAGCCTATCGATCCACGGCTTGCGCATCCGGT
778 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
20152822 CTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCCCG-TTCATTTCGTCAGTTGGCTTAG
843 CTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTTCGTTTCGTCAGTTGGCTTAG
* * * * *
20152879 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACAGCAGCA-CATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGAT-C-GG
** * * ** **** ** ** * * *** *
20152943 --GCTGGGCATGTGCTGGTGCCGTATTTTTCTTCATC-GGGGCA-CCATCACCGGAGCATCGCCG
64 CAGC-ACGCA-GAGCGGGACCCG-ACCGATCCCCGGCTTGCGCATCC--CACC-CCTC-TGGCC-
* * * * ** * ** ** *
20153004 GAGAACCTGATCGGCGGCATTG-GGGTTCCTACGATCGGG-GGACCCGGAGGGGTGTGTGGACAT
121 G-G---CTGAGCGCCCGCA-CGCTCGTT--T-C-AT-GGGTTGA--CTTA---G-GCAT--AC-G
* * ** ** * **** * * **
20153067 GATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCAAA
167 GA-GTTC-AT---TCCCAGT-C-T-AAGC--ATA-CGGAGTTC-ATTCC-CAGTCTAAGATC--A
* * *** * * ** * *** * ** ** * * *
20153131 AACTCACACC--CCCTTA-AAGAGCATTTG-AGATTTTACAGGTTTGCTGCTACTAGCCATTAAA
217 GAC-CAGACCAAGGGTTACGACAGCACATGCTG-GGCT-CGGGCATG-TGCTGGT-GTC-GT-AT
* * ** ** ** *** * * ** * * ***
20153192 GTGTCTGAAATGGGGACACTTTTTTCA-AG--TTGTCACAAAATCTTGTACAC-TTTG-ATT---
275 TTTTCTTCACCGGGG-CACCATCGCCAGAGCATCGCCGGAGAA-CCTG-AC-CGGCGGCATTAGG
*** * * *** ** **** * * * * * * *
20153249 -TTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAGTACAAGGATCA-CATCTACCA--AGT--T
336 GTTCCGGC-G-A-----TCGGGGGGGCCGGGGGGTGTGC--GCA-CATGATGTGCGATGGGTGCT
* *** * ** ***** * * ** * * *****
20153308 --TA--GGGCCAAAATCTTTTCGAAAAAAT--TTTAAAAAATCTCGA-ATCGT-A-AAAAGTTTC
391 GGTACTTGGCCCTTATATTGGC-CCCCTATCCCTCATCAAACCTCGAGAAC-TCACACCCCCTT-
* ** *** * *** * * * * *** *
20153364 AAAAATAATGAAAAATAAAAAACGAG-TCGTCTCGCCAAGAAACTTCACGCGAAG-G-CT-TAA-
453 AAAGAGCATTTGAGATTTTACA-G-GTTTG-CT-GCC-AGTAGC--CA-TTAAAGTGTCTAAAAT
* * * * * * * *
20153424 -GGGAC-CATTGTATGAAATTACAAGCCATAAAAATGGCATTGGAATGGATTAGTCATATGGAGT
510 GGGGACAC-TTTTTTCAAA-T---GGTCA-CAAAAT--C-TT-G--T--A-CA--C-T-TCGAGT
* * * ** * *****
20153487 TCATTCCCAGTCT-AA--GTTTAGACCGA-ACCGAAGGTTGTGATAGC-AGGATCGACAG-C-AC
556 T--TT--TAG-CTGAATTTTTTTGTGC-ATGCC-AA--CAAAAATA-CAAGGATC-AC-GTCTAC
** ** *** * * *** * ***** *
20153545 GTAG-AGGGGGACCCGACCGATCCCCAGCTTGCG-CATCCTGTCCCT-CTGGTTGGCTGAGTGAC
609 CAAGTTTGGGG--CC-AAAAAT---C--CTTCCGAAAAAAT-T--TTAAAAAAT-CCTGA---AC
* * **** *** * * * *** ** * * *
20153607 TGCACGCTCGTTTCGTGAGTTGACTTATGCATACGAAGTTC-ATTCCCAGTCTAAGCATATCGAG
659 CGTA-AAAAGTTTCAAAAATCG--TGAAAAATA-GAA-AACGAGT--C-GTCT-TGC-CAT-GA-
** * * * * ** ** **
20153671 TTCATTCCCAGTCTAA--CATCAGACTGGACCGAGGGT-TG---TGGC-AGCACAT---TCTGGG
712 AAC-TTCAC-GT-GAAGGC-TTA-A-GGGACC-ATTGTATGAATTTACAAGC-CATAAAAAT-GG
* * * * ** * *** * * * *
20153726 C-TCGAGCATGT-G--CTGGTGCCGCAT-TTCTCTTCGTCGGGGCACC-ATCGTCGGAGCATCGT
768 CATTG-GCACGTAGAAAT-ATGAAG-ATGTGC-C-TAAAC---CCACCTA-C--C--ACCCT-AT
** * * * *** * * *** ** *
20153785 CGGA-GAACTTGATCGACGGCATTGGGGT-T-TC-GG-CGATCG-AGGGGCCGGGGGATGTGCGC
819 C-GATCCAC-GGCTTG-C-GCA-TCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCG-TCCGCCC
* * * * **
20153844 ACAT-GATGTGCAATGGGTGCTGGTACTT-G
877 GCTTCG-T-TTC-GTCAGT--TGG--CTTAG
* **** * * ** ** **** *** *
20153873 GCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACA-C-CCCCTTAAAG-AGA
1 G--C--ATA-CGGAGTTC-ATTCC-CAGTCTAAGATC-AG-AC-CGGATCGAGGGTTGCGGCAGC
*** * * * *** *** * ** ***** * *
20153934 ATTTGAGATTTTACAATTTTGCTCCCAATAGCCATTAAAGTGTCTAAAATGGGGAACTTTTTTCA
56 A---G-GA-TCGGC-A----GCACGC-AGAG-C-GGGACCCGACCGATCCCCGG--C---TTGCG
* ** *** ** ***** * * ** ** ** * ** *
20153999 AATGGTCACAAAATCTTGTGCAC-TTTGAGTTTTTAGC-TGATTTTTTTTTGTGCATGCCAAAAA
103 CAT-CCCAC-CCCTC-TG-GC-CGGCTGAG-CGCCCGCACGCTCGTTTCATG-GGTTGAC-TTAG
** * * * * ** * *** ***** * * *
20154062 AAATACAAGGA-TCACATCTAACAAGTTTGGGGCCAAAAC-TCCTTCCAAAAAAATTTTAAAAAA
160 GCATAC--GGAGT-TCAT-T-CCCAGTCT-AAG-C-ATACGGAGTT-CATTCCCAGTCT--AAGA
* ** ** *** ***** * * ** *
20154125 TCCATCACC-GCAAAAAGTTTTA--A-A--A-ATTG-TGAAAAATAAAAAACGAGTCATCTTGCC
214 T-CA-GACCAG-ACCAAGGGTTACGACAGCACA-TGCTG--GGCTCGGGCATGTG-C-TGGTGTC
* * * * *** ** * * ** * ** *
20154182 ATGAATTTAC--AAGCC--ATAAAAAT-GGCATTG-GCAT-G-CAGA-AATATGA-AGATGTGCC
271 GT-ATTTTTCTTCA-CCGGGGCACCATCGCCA--GAGCATCGCCGGAGAACCTGACCGGCG-GCA
* ***** ** * * **** ** ** * * * ** * ** * *
20154237 TAAACCCACCTACCACCCTACCGATCC-ACGGCT-TTCGTATCCCG-TCT-CTCTGGCTGGCGTA
331 TTAGGGTTCCGGCGA-TCGGGGGGGCCGGGGGGTGTGCGCA-CATGATGTGCGATGGGT-GC-TG
* * * ** * ** * * ** ** *
20154298 GTGACCGCCTGCCCACTCAT-TT---CATCGATTGGCTCAGGCATA--T-G-GAGTTCATTCCCA
392 GT-A---CTTGGCC-CTTATATTGGCCCCCTA-TCCCTCA-TCAAACCTCGAGAACTCACACCCC
* * ** * * * * * * * *
20154355 GTCT-AAGATCGGA-CCG-GA--CT-GAGGGTTGCGGCAACAGGATTGGCA--GAA-TG-C--AG
450 CT-TAAAGA--GCATTTGAGATTTTACAGGTTTGCTGC--CA-G-TAGCCATTAAAGTGTCTAAA
* * *** * *** ** **** * * ** *
20154408 AGGGGGACCCGATCGATCCCGGTCTTGCACATCCCGCCCTTCTGGC-CGGCTGAGTTTTTGGCTG
508 ATGGGGACAC--TTTTTTCAAATGGT-CACA---AAATCTTGT-ACACTTC-GAGTTTTTAGCTG
* * ** * **
20154472 AATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAGAAAACTAA
565 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
* * *
20154537 TTTCGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTTC-AAAATCGTGAAAAATAAAAA
630 TTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAA
* * *
20154600 ATGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
693 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
20154665 ATAAAAATGGCATTGGCACGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
758 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * **
20154730 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACCCACCCGT----CCGC-TCGTTTAA
823 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTTCGTTTCG
* *
20154790 TCAGTCGGCTCAG
888 TCAGTTGGCTTAG
* * * ** * *
20154803 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTGCGGCAATAGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
** * ** ** * * *
20154868 GCATACAGAGGGGGACCCGGTCGATCCCCTTCTTGCGCATCCCGCCCCTCTGGCCGACTGAGAGC
66 GCACGCAGAGCGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
** * *
20154933 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAG
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * * *
20154998 TTCATTCCCAGTTTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAG
196 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGCATG
* * * * ** *
20155063 TGCTGGTTTCGCATTTTTCTTCGCTGGGGCACCATCGCCAGAGCATCGTTGGAGAACCTGACCGA
261 TGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGG
* * * *
20155128 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCCCGCATGATGTGCGATGGGTGCT
326 CGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
20155193 TGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAA
391 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
20155258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTA
456 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT-
* ** * * *
20155322 TTTTCGAATGGTCACAAAAAGTTGTACACTTCCAGTTTTTAGCTGACTTTTTTTGTGCATACCAA
520 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
20155387 CAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
585 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* ** * * *
20155452 ATCCCGAACCACAAAAAGTTTAAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAAC
650 ATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
20155517 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGGCATTGGCATGCA
715 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
* * * * *
20155582 GAAATATGAATG-TGAGTCTAAACCCACCAACCACCCTATCGATCTACGGCTTACGCATCCCGTC
780 GAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * ** *
20155646 TCTATGGCCGGCATAGTGCCCGTCTGCCCGCCTAC-TCGTTTCGTCGGTTGGCTTAG
844 TCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTTCGTTTCGTCAGTTGGCTTAG
* * * * *
20155702 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * ** * *
20155767 GTACGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCAC
66 GCACGCAGAGCGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * *
20155832 CCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACCGAG
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
20155897 TTCATTCCTAGTGTAAGATCAGACCGGACCAAGGGTTACGACAGCACATGCTGGGCTCGAGCGTG
196 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGCATG
* ***
20155962 TGCTGGTG-CTGAATTTTTCTTTGTCGGGGCACCAT---C---G--T---CGGAGAACCTGACCG
261 TGCTGGTGTC-GTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCG
* * * * * * * *
20156015 GCGACATTGGGGTTTCGACGATCGGGGGGGCTGGGGGGTGTGCGCAGATGATGTGCGATGGTTGT
325 GCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
** * * * ***
20156080 TGGTACTTCACCCTTATGTTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACACTTGCTTAA
390 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
20156145 AGAGCATTTGAGATTTT-CAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
455 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* * *
20156209 TTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCAAGCCAA
520 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
20156274 AAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAA
585 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* * * * *
20156339 ATCCTTAACCGCAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTGGCCATGAAAC
650 ATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* **
20156404 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCACACA
715 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
*
20156469 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
780 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
20156534 CTCTGGCCGACGTAATGCCCGCCCGTCCGCCCGCCCGCTCATTTTGTCAGTTGGCTTAG
845 CTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCG--C-TTCGTTTCGTCAGTTGGCTTAG
* * * *
20156593 GCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGA-CTGAGGGTTGAGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGC
* * * * * * *
20156657 AGCATGCAGA-CGGGGACTCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGTTGAGC
65 AGCACGCAGAGC-GGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGC
* * * *
20156721 GCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
129 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * **
20156786 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
194 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGCA
* * **
20156851 TGTGCTGGTGCCGTATTTTTCTTC-GCGAGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGAC
259 TGTGCTGGTGTCGTATTTTTCTTCACCG-GGGCACCATCGCCAGAGCATCGCCGGAGAACCTGAC
* * * * * *
20156915 CGACGGCATTGGGGTTCCGGCAATCGAGGGGGCCGAGGGGGGTGTGCGCACGTGATGTGTGATGG
323 CGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGG
* ** *
20156980 GTGCTGGTACTTGGCCCTTATATTGGCTCGTTATCCCTCATCAAACCTCGAGAACTCCCACCCCC
386 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
20157045 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAACGTTTCTGAAATGGGGAC
451 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
* * * *
20157110 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTCTAGCTGAATATTTTTATGCATG
516 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
20157175 CCAACAAAAATACAAAGATCATGTCTACCAAATTTGGGGCCAAAACTCCTTTCGAAAAAATTTTT
581 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* ** * * *
20157240 AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAATGAGTCGTCTGGCCATG
646 AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
20157305 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
711 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * *
20157370 CACAAAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
776 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
20157435 GTCTCTCTTGCCGGCGTAGTGCCCG--C--CCGCCCGC-TCGTTTTGTC-GTTTGGCTTAG
841 GTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTTCGTTTCGTCAG-TTGGCTTAG
* * ** * * *
20157490 GCATACGGAGTGCATTCCCAGTCTAAGATCGGACTAGATTGAGGGTTGCGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * *
20157555 GCACACAGAGGGGGACCCGACCGATCCCAGGCTTACGTATCCCGCCCCTCTGGCCGGTTGAGCGC
66 GCACGCAGAGCGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * *
20157620 CCGTACGCTCGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
20157681 ---------A-TC---G----GACC-G----AGGGTTGCTG-CAGCACATGCTGCGG-TCGGGCA
196 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTAC-GACAGCACATGCTG-GGCTCGGGCA
* * ** * ** ** * * **
20157722 TGTGCTGATGCCACATTTTTTTTCGTCGGGGCACCATCATCGGAGCATCACCAAAGAACCTGACC
259 TGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACC
** * * *
20157787 GATGGCACTGGGGTTCCGGCGATCGGCGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
324 GGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
20157852 CTGGTACTTGGCTCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCCTTA
389 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * **
20157917 AATAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGACACACT
454 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* * *
20157982 TTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTGTGCATGCCA
519 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
20158047 AAAAAAATACACGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
584 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* ** * *
20158112 AATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
649 AATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * *
20158177 CTTCACCTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAGAAATGGCATTGGCATGC
714 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * * *
20158242 AGAAATATGGAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
779 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
20158307 TCTCTGGCCG--G-CG-G---GCCCGT----CTGC-TCGTTTCGTCGGTTGGCTTAG
844 TCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTTCGTTTCGTCAGTTGGCTTAG
* * * * *
20158352 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGC---AT-----
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
** * * * * *
20158409 GCA-G-AG-G-GGGACCCGGTCGATCCCCAGCTTGTGCATGCCACCCTTCTGGTCGGCTGAGCGC
66 GCACGCAGAGCGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* *
20158470 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-AT-C--AG
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* *
20158531 ---------A--CT--G----GACC-G----AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
196 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGCATG
* * ** ** * * *
20158574 TGCTGGTG-CTGCATTTTTTTTCGTCGGGGCACCATCATCGGAGCATCACCGGACAACCTGACCG
261 TGCTGGTGTC-GTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCG
** * * ** * * * *
20158638 ATGGCATT-GGGGTCCGACGATAAGCGGGGCTGGAGGGTGTGCGCACATGATGTGTGATGGGTGC
325 GCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
20158702 TGGTACTTCGCTCTTATATTGGGCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAA
390 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * * * *
20158767 AGTGTATTTGAGATTTAACAGGTTTGCTGCCAGTAGCAACTAAAGTGTCTAAAATGGGGTCACTT
455 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
20158832 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
520 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
20158897 AAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCTAAAAATCCTTTCAAAAAAATTTTAAAAA
585 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* * ** * * *
20158962 AT-CTAGAACTGCAAAAAGTTTTGAAAATCCTGAAAAATAGATAACGAGTCGTCCTGCCATGAAA
650 ATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
20159026 CTTCACGTGAAGGCTTAAGGGACCCTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
714 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
*
20159091 AGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
779 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
** * * * * * ** *
20159156 TCTCTGGCCGGTGTAGTGCCCGCCCATCCACCTGCTCGCTCATTTTGTTGGTTAGCTTAG
844 TCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCT---TCGTTTCGTCAGTTGGCTTAG
** * * * * *
20159216 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAAGATCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * *
20159281 GCACGTAGAGGGGGACTCGACTGGTCCCCGACTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGC
66 GCACGCAGAGCGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* *
20159346 CCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
** ** * * * * *
20159411 TTCATTCCCAGTCTAAGATTGGACTGGACCAACGGTTGC-AGTAGCACATGCTGGGCTTGAGCAT
196 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGA-CAGCACATGCTGGGCTCGGGCAT
* * ** ** * **
20159475 GTGCTGGTG-CTGCATTTTTTTTCGTCGGGGCACCATCATCGGAGCATCATCGGAGAACCTGACC
260 GTGCTGGTGTC-GTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACC
** * * * * *
20159539 GATGGCATT-GGGGTCCGGCGATCAGCGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTG
324 GGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
20159603 CTGGTACTTCGCTCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
389 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
20159668 AAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGTCACT
454 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
*
20159733 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCA
519 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
20159798 AAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTTCGAAAAAAATTTAAAA
584 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* * * * *
20159863 AAT-CTCGAATCGTAAAAAGTTTTGAAAAA-CGTGAAAAATAGAGAACGAGTCATCTTGCCATTA
649 AATCCT-GAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
20159926 AACTTCACGTGATGGCTTCAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCAT
712 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* ** *
20159991 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTAGCATCCCA
777 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
20160056 TCTCTTTAGCCGGCGTAGTGCCCGCCCACACGCCTGCCCGCCCGC-TCGTTTCGTCGGTTGGCTT
842 TCTCTCTGGCCGACGTAGTGCCCG--C-C-CG--T--CCGCCCGCTTCGTTTCGTCAGTTGGCTT
20160120 AG
899 AG
* * * * * * *
20160122 GCATACGGAGTTCCTTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGTAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * **
20160187 GCACGTAGAGGGGGACCC-AGCCTATCCCCAGCTTACGCATTCCGCCCCTCTGGCCAACTGAG-G
66 GCACGCAGAGCGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
* * ** * * *
20160250 GCCGTACGCTCGTTTTGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAA
130 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * *
20160315 GTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCG-CTAGCACATGCTAGGCTCGGGCA
195 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGAC-AGCACATGCTGGGCTCGGGCA
* * * ** * * * **
20160379 TGTGCTGGTGCCGCATTTTTTTTCGTCGAGGCACCATCGTC-GTGGCATCATCGGAGAACCTGAC
259 TGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCAG-AGCATCGCCGGAGAACCTGAC
* * * *
20160443 CGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGCGGTGTGCGCACATGATGTGCGATGGGT
323 CGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
** * *
20160508 GCTGGTACTTGGCCCTTATATTGGCCCTGTATCCATCATCAAACCTCGAGAACTCACACGCCCTT
388 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
20160573 CAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCT
453 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
20160625 TGTACACTTC
Statistics
Matches: 8231, Mismatches: 1688, Indels: 1045
0.75 0.15 0.10
Matches are distributed among these distances:
848 1 0.00
849 472 0.06
850 200 0.02
851 2 0.00
852 3 0.00
853 1 0.00
854 3 0.00
856 5 0.00
859 2 0.00
860 4 0.00
862 68 0.01
863 1 0.00
864 68 0.01
865 1 0.00
866 1 0.00
867 3 0.00
869 445 0.05
871 105 0.01
872 8 0.00
873 1 0.00
874 2 0.00
875 2 0.00
876 97 0.01
877 2 0.00
878 1 0.00
880 3 0.00
883 2 0.00
884 1 0.00
886 1 0.00
887 357 0.04
888 144 0.02
889 9 0.00
890 11 0.00
891 285 0.03
892 11 0.00
893 26 0.00
894 69 0.01
895 755 0.09
896 104 0.01
897 467 0.06
898 431 0.05
899 676 0.08
900 30 0.00
901 20 0.00
902 659 0.08
903 12 0.00
904 111 0.01
905 831 0.10
906 793 0.10
907 4 0.00
908 2 0.00
909 2 0.00
910 9 0.00
911 6 0.00
912 1 0.00
913 3 0.00
914 3 0.00
915 1 0.00
916 2 0.00
918 2 0.00
919 4 0.00
920 5 0.00
921 5 0.00
922 2 0.00
923 6 0.00
924 16 0.00
925 5 0.00
926 4 0.00
927 2 0.00
928 1 0.00
929 8 0.00
930 17 0.00
931 36 0.00
932 28 0.00
933 21 0.00
934 20 0.00
935 9 0.00
936 22 0.00
937 16 0.00
938 22 0.00
939 3 0.00
940 19 0.00
941 15 0.00
942 4 0.00
943 3 0.00
944 9 0.00
945 3 0.00
946 10 0.00
947 11 0.00
948 4 0.00
949 13 0.00
950 10 0.00
951 12 0.00
952 4 0.00
953 10 0.00
954 3 0.00
955 12 0.00
956 19 0.00
957 5 0.00
958 7 0.00
959 9 0.00
961 3 0.00
962 5 0.00
963 6 0.00
964 6 0.00
965 6 0.00
968 3 0.00
969 11 0.00
970 3 0.00
971 16 0.00
972 10 0.00
973 8 0.00
974 10 0.00
975 1 0.00
976 9 0.00
977 8 0.00
978 9 0.00
979 12 0.00
980 4 0.00
981 12 0.00
982 10 0.00
983 4 0.00
984 15 0.00
985 8 0.00
986 14 0.00
987 20 0.00
988 22 0.00
989 16 0.00
990 16 0.00
991 13 0.00
992 6 0.00
993 9 0.00
994 12 0.00
995 11 0.00
996 16 0.00
997 15 0.00
998 10 0.00
999 13 0.00
1000 19 0.00
1001 12 0.00
1002 6 0.00
1003 4 0.00
1004 3 0.00
1005 2 0.00
1006 1 0.00
1008 2 0.00
1009 3 0.00
1010 3 0.00
1011 7 0.00
1012 4 0.00
1013 6 0.00
1014 2 0.00
1017 7 0.00
1018 2 0.00
1019 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGAGCGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGCATG
TGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGG
CGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
TCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTTCGTTTCGTCAGTTGGCTTAG
Found at i:20153672 original size:26 final size:26
Alignment explanation
Indices: 20153635--20153686 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20153625 GTTGACTTAT
20153635 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20153661 GCATATCG-AGTTCATTCCCAGTCTAA
1 GCATA-CGAAGTTCATTCCCAGTCTAA
20153687 CATCAGACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20155897 original size:26 final size:26
Alignment explanation
Indices: 20155861--20155913 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20155851 GTTGACTTAG
*
20155861 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
* *
20155887 GCATACCGAGTTCATTCCTAGTGTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
20155913 G
1 G
20155914 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:20156343 original size:24 final size:25
Alignment explanation
Indices: 20156310--20156366 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 25
20156300 AGTTTGGGGC
* *
20156310 CAAAACTCCTT-CCGAAAAAATTTT
1 CAAAAATCCTTACCGAAAAAAGTTT
*
20156334 CAAAAATCCTTAACCGCAAAAAGTTT
1 CAAAAATCCTT-ACCGAAAAAAGTTT
20156360 CAAAAAT
1 CAAAAAT
20156367 TGTAAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 10 0.36
26 18 0.64
ACGTcount: A:0.47, C:0.23, G:0.05, T:0.25
Consensus pattern (25 bp):
CAAAAATCCTTACCGAAAAAAGTTT
Found at i:20156788 original size:26 final size:26
Alignment explanation
Indices: 20156752--20156804 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20156742 GTTGACTTAG
*
20156752 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20156778 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20156804 G
1 G
20156805 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20158082 original size:869 final size:868
Alignment explanation
Indices: 20155887--20163126 Score: 7529
Period size: 902 Copynumber: 8.2 Consensus size: 868
20155877 CCCAGTCTAA
* * * * * *
20155887 GCATACCGAGTTCATTCCTAGTGTAAGATCAGACCGGACCAAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG-CAGCACATGCTGGG
* * * *
20155952 CTCGAGCGTGTGCTGGTGCTGAATTTTTCTTT-GTCGGGGCACCA---TC---G--T---CGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTT-TTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * *
20156005 AACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCTGGGGGGTGTGCGCAGATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * ** * * *
20156070 CGATGGTTGTTGGTACTTCACCCTTATGTTGGCCCCCTATCCCTCATCAAACATCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*** *
20156135 ACTTGCTTAAAGAGCATTTGAGATTTT-CAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
20156199 GGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
20156264 TGCAAGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* ** * ** * * *
20156329 ATTTTCAAAAATCCTTAACCGCAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTG
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
20156394 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
20156459 TTCGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
20156524 CATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGTCCGCCCGCCCGCTCATTTTGTCAGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGT-A-G--TG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
20156589 TTAGGCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGAGGCAGCAGGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * *
20156654 GGTAGCATGCAGACGGGGACTCGATCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGTCGGTTG
771 GGTAGCACGCAGAGGGGGACCCGACCGATCC-CAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
20156718 AGCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAG
835 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
20156752 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-T--A-AG---------A-TC--AGATC-G----GAC
* * *
20156817 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-CGAGG
40 CGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCG-GG
* * * *
20156881 GCACCATCG-CTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCAATCGAGGG
103 GCACCATCGTC-GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* * * *
20156945 GGCCGAGGGGGGTGTGCGCACGTGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCG
167 GGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
20157010 TTATCCCTCATCAAACCTCGAGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
230 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
20157075 CTACCAGTAGCCATTAACGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
295 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * * * *
20157140 CACTTTGAGTTTCTAGCTGAATATTTTTATGCATGCCAACAAAAATACAAAGATCATGTCTACCA
360 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* *
20157205 AATTTGGGGCCAAAACTCCTTTCGAAAAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTTGAAA
425 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAA
* * *
20157270 ATCGTAAAAAATAGAAAATGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
490 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
20157335 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCATAAACCCA
555 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* *
20157400 CCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTTGCCGGCGTAGTGCCCGCCCGC
620 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * **
20157465 CCGCTCGTTTTGTCGTTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCGGACTAGATT
685 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * *
20157530 GAGGGTTGCGGCAGTAGGATCGGTAGCACACAGAGGGGGACCCGACCGATCCCAGGCTTACGTAT
750 GAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCAGGCTTGCGCAT
* * *
20157595 CCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTGGACTTAG
815 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
20157649 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCTGCAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC-GCAGCACATGCTG-G
* * * **
20157714 G-TCGGGCATGTGCTGATGCCACATTTTTTTTCGTCGGGGCACCATCATCGGAGCATCACCAAAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
20157778 AACCTGACCGATGGCACTGGGGTTCCGGCGATCGGCGGGGCCGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
20157843 CGATGGGTGCTGGTACTTGGCTCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
20157908 ATCCCCTTAAATAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * * *
20157973 GGACACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
20158038 TGCATGCCAAAAAAAATACACGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
** * *
20158103 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
20158168 GCCATGAAACTTCACCTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAGAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
20158233 TTGGCATGCAGAAATATGGAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCA
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
20158298 CATCCCGTCTCTCTGGCCGGC---G-G---GCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
20158356 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTT----------G-T-GGTAGCAT
714 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
** * * * * *
20158409 GCAGAGGGGGACCCGGTCGATCCCCA-GCTTGTGCATGCCACCCTTCTGGTCGGCTGAGCGCCCG
779 GCAGAGGGGGACCCGACCGAT-CCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
20158473 CACGCTCGTTTCGTGGGTTGACTTAG
843 CACGCTCGTTTCGTGGGTTGACTTAG
*
20158499 GCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGC-GCAGCACATGCTGG
* * *
20158563 GCTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCATCGGAGCATCACCGGAC
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* ** * * *
20158628 AACCTGACCGATGGCATTGGGG-TCCGACGATAAGCGGGGCTGGAGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
20158692 TGATGGGTGCTGGTACTTCGCTCTTATATTGGGCCCCTATCCCTCATCAAACTTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
20158757 ACCCCCTTAAAGTGTATTTGAGATTTAACAGGTTTGCTGCCAGTAGCAACTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
20158822 GGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
20158887 TGCATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCTAAAAATCCTTTCAAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
** * * * * *
20158952 ATTTTAAAAAATCTAGAACTGCAAAAAGTTTTGAAAATCCTGAAAAATAGATAACGAGTCGTCCT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
20159017 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCCTTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
20159082 TTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
20159147 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCATCCACCTGCTCGCTCATTTTGTTGGTTAGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC--GC-CC-GCTCG----TTTCGTCGGTTGGC
* * * *
20159212 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAAGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * * *
20159277 AGTAGCACGTAGAGGGGGACTCGACTGGTCCCCGACTTGCGCATCCCGCCCCTCTGGCAGGCTGA
771 GGTAGCACGCAGAGGGGGACCCGACCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
20159342 GCGCCCACACGCTCGTTTCATGGGTTGACTTAG
836 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
20159375 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC--AGA-T---C-GGAC
* * * * * *
20159440 CAACGGTTGCAGTAGCACATGCTGGGCTTGAGCATGTGCTGGTGCTGCATTTTTTTTCGTCGGGG
40 CGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGG
* * * * * *
20159505 CACCATCATCGGAGCATCATCGGAGAACCTGACCGATGGCATTGGGG-TCCGGCGATCAGCGGGG
104 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * * * *
20159569 TCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTCGCTCTTATATTGGGCCCCTAT
169 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
20159634 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGC
234 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
20159699 CAGTAGCAATTAAAGTGTCTAAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACT
299 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
20159764 TCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
364 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * *
20159829 TAGGGCCAAAAATCCTTTCGAAAAAAATTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAAACG
429 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCG
* * * * * *
20159894 TGAAAAATAGAGAACGAGTCATCTTGCCATTAAACTTCACGTGATGGCTTCAGGAACCATTGTAT
494 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
20159959 GAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
559 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
** * * *
20160024 CCACCCTATCGATCCACGGCTTTAGCATCCCATCTCTTTAGCCGGCGTAGTGCCCGCCCACACGC
624 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----G------C-C
* *
20160089 CTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCCTTCCCAGTCTAAGATCAG
678 C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
20160154 ACCAGACCGAGGGTTACAGTAGCAGGATCAGCAGCACGTAGAGGGGGACCC-AGCCTATCCCCA-
742 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-CCGAT-CCCAG
* * ** * * * *
20160217 GCTTACGCATTCCGCCCCTCTGGCCAACTGAG-GGCCGTACGCTCGTTTTGTTGGTTGACTTAG
805 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
20160280 GCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGAT
1 GCATACGGAGTTCATTCCCAG--T---C-T---AAG----------ATC--AGATCGGA-C----
* *
20160345 CGAGGGTTGCGCTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGAGG
40 CGAGGGTTGCGC-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGG
*
20160410 CACCATCGTCGTG-GCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCC-AGCGATCGGGGG
104 CACCATCGTCG-GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGG
* **
20160473 GGCCGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTGT
167 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
20160538 ATCCATCATCAAACCTCGAGAACTCACACGCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * ** *
20160603 GCCAGTAGCCAATAAAGTGTCT----T--GTACACTTCGAGTTTT----TGG-CTA-AATTTTTT
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT----TTTTCAAATGGTC-ACAA-AATCT
* * * * ***** *** *** * ****** * *
20160656 TTTGCA-TGCCAACAAAAATA-C--AAGGATCACGT-C-TTCCAAGTTTGGGTCCAA-AACTC-C
356 TGTACACT-TCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGA-TCAC
* * ** * ** * *** * * * ** ***
20160713 TTTTGAAAAAATTT----AAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
417 GTCT-ACCAAGTTTGGGGCCAAAACT-CCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTA-A
* **** * *
20160774 AAA----TG--AGTCGTG-TTGCTATG-AAAC---T--TC---ACGTG--A----A-G-----GC
478 AAAGTTTTGAAAATCGTGAAAAATA-GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
***
20160811 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAATAGAAATATGAAGAT
542 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
** * * * *
20160876 GCACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTATGGCCAGCGT
607 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* *
20160941 AGT----GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
672 AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** * * ** *
20161002 ATCAGACCAGACCAAGGGTTGTGGTGGCAGGATCTGTAGTACATAGAGGGGGACCCGACTGATCC
737 ATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCC
* * * ** * * * *
20161067 CCGACTTGCCCATCCCGCCTTTCTGGCTGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTAACTT
802 CAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
20161132 AG
867 AG
20161134 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A-TC-------GGACC-G--
* * * * *
20161199 CAAGGGTTTTG-GTAGCACATGCTGGGCTCGAGCATGTGCTGGTGACGCATTTCTCTTCGTCGGG
42 --AGGG--TTGCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGG
* * * **
20161263 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGACATTAGGGTTTTGACGATCGGGGGG
103 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* ** * * *
20161328 GTCGGGGGGTGTGCTTACATGATGTGCGAAGGGTGCTGGTATTTGGCCCTTATACTGGCCCCCTA
168 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
20161393 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
20161458 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTACAAATGCTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * **
20161523 TTCGAGTTTTTAGCTGAAGTTTTTTGTGCAAGCCAAGAAAAATGGAAGGATCACGTCTACCAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * * * * * **
20161588 TTGGCGCCAAAACTCCTTCCTAGAAAACTTTAAAAAATCCTGAACCGTAAATAGTTTCAAAAATC
428 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATC
* * *
20161653 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATA
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
20161718 TGAATTTGCAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
*
20161783 ACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCG
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C-
* * * *
20161848 CCTGCCCACTCGTTTCGTCGGTTGGCTTCGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA-C
681 CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * * *
20161912 TGAACCAAGGGTTGCGGTAGCAGGATTGGTAGCACGTAGAGAGGGACCCGACCGATCCCTGACTT
745 AG-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCAGGCTT
* * * * *
20161977 GCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACTCTCATTCCGTGGGTTGAGTTAG
809 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** *
20162037 GCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGACTAAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG-CAGCACATGCTGGG
* * ** ** *
20162102 CTCGAGCATGTGCTGGTGTCATATTTTTCTTTAC--CGGGGCACCATCG-CTGGAGCATCGTCAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTT-TTT-CGTCGGGGCACCATCGTC-GGAGCATCACCGG
* * *
20162164 AGAACATGATCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGAGGGGGTGTGCACACATGAT
127 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGAT
* *
20162228 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
20162293 AACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
20162358 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
20162423 TTGGGCATGTCAACAAAAATACAAGGATCACGTCGACCAAGTTTGGGGCCAAAACTCCTTTCGAA
386 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * ** *
20162488 AAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAAAT-GTGAAAAATAGAGAACGAGTCG
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-TGAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
20162552 TCTGGCCATGAAACTTCACGTGATGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
20162617 AGAATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCATGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
20162682 TGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCTGCCCACCTGCCCGCCCGCTCGCTTGTTTCGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TG--C-CC-GCCCGCCCGCT--C--GTTTCGT
* * *
20162747 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGGCA
698 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * **
20162812 GCAGGATCGGTAGCACGCAAAGGGGGACCC-AGCTGATCCCCA-GCTTGCGCATCCTACCCCTCT
763 GCAGGATCGGTAGCACGCAGAGGGGGACCCGA-CCGAT-CCCAGGCTTGCGCATCCCGCCCCTCT
* * *
20162875 GGCTGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAG
826 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * *
20162918 GCATACAGAGTTCATTCCCTA-TCTAAGGTTGGACCGAACCGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCC-AGTCTAAGATCAGATCGGACCGAGGGTTGC-GCAGCACATGCTGG
* * * ** * * *
20162982 GCTCAGGCATGTGCTGGTGCCGCATTTCTCTTCCCCAGGGCACCAACGTCGGAGCATCATCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
20163047 AACCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
20163112 CTATGGGTGCTGGTA
194 CGATGGGTGCTGGTA
20163127 TTTGAAACTT
Statistics
Matches: 5384, Mismatches: 721, Indels: 524
0.81 0.11 0.08
Matches are distributed among these distances:
836 2 0.00
837 3 0.00
845 3 0.00
846 1 0.00
847 2 0.00
848 1 0.00
849 472 0.09
850 217 0.04
851 5 0.00
852 6 0.00
853 131 0.02
854 292 0.05
855 2 0.00
856 9 0.00
858 1 0.00
859 3 0.00
860 24 0.00
861 4 0.00
862 74 0.01
863 12 0.00
864 69 0.01
865 40 0.01
866 4 0.00
867 6 0.00
869 568 0.11
870 6 0.00
871 118 0.02
872 5 0.00
873 1 0.00
874 5 0.00
875 8 0.00
876 112 0.02
877 545 0.10
878 13 0.00
879 11 0.00
880 5 0.00
881 316 0.06
882 23 0.00
883 1 0.00
884 4 0.00
885 3 0.00
886 6 0.00
887 1 0.00
888 2 0.00
889 7 0.00
890 11 0.00
891 182 0.03
892 4 0.00
893 7 0.00
894 4 0.00
895 24 0.00
896 14 0.00
897 210 0.04
898 4 0.00
899 8 0.00
900 22 0.00
901 7 0.00
902 641 0.12
903 187 0.03
904 105 0.02
905 519 0.10
906 273 0.05
907 3 0.00
908 1 0.00
910 5 0.00
911 2 0.00
912 2 0.00
913 2 0.00
914 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (868 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
AGAGGGGGACCCGACCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAG
Found at i:20159405 original size:26 final size:26
Alignment explanation
Indices: 20159375--20159427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20159365 GTTGACTTAG
20159375 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20159401 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20159427 G
1 G
20159428 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20160317 original size:26 final size:26
Alignment explanation
Indices: 20160280--20160332 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20160270 GTTGACTTAG
*
20160280 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20160306 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
20160332 G
1 G
20160333 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20161170 original size:26 final size:26
Alignment explanation
Indices: 20161134--20161186 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20161124 GTTAACTTAG
20161134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20161160 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20161186 G
1 G
20161187 ATTGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20162523 original size:877 final size:877
Alignment explanation
Indices: 20160622--20163126 Score: 3067
Period size: 877 Copynumber: 2.8 Consensus size: 877
20160612 CAATAAAGTG
* * * *
20160622 TCTTGTACACTTCGAGTTTTTGGCTAAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACG
1 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * * * * * *
20160687 TCTTCCAAGTTTGGGTCCAAAACTCCTTTTGAAAAAATTTAAAAAAATCCCAAACTGTAAAAAGT
66 TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
* * *
20160752 TTCAAAAATCGTGAAAAATAGAAAATGAGTCGTGTTGCTATGAAACTTCACGTGAAGGCTTAAGG
131 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*** **
20160817 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAATAGAAATATGAAGATGCACCT
196 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
* * * *
20160882 AAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTATGGCCAGCGTAGT---
261 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* *
20160944 -----G--C-CC-GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
326 CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * * * *
20161000 AGATCAGACCAGACCAAGGGTTGTGGTGGCAGGATCTGTAGTACATAGAGGGGGACCCGACTGAT
391 AGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGAT
* ** * * * *
20161065 CCCCGACTTGCCCATCCCGCCTTTCTGGCTGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTAAC
456 -CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
20161130 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
520 TTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C-------GGA-C
** ** * * * *
20161195 AGATCAAGGGTTTTGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGACGCATTTCTCTTCGTC
563 ----CAAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTCGCC
* * * * **
20161260 GGGGCACCATCG-TCGGAGCATCACCGGAGAACCTGACCGGCGACATTAGGGTTTTGACGATCGG
624 GGGGCACCATCGCTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* ** * * *
20161324 GGGGGTCGGGGGGTGTGCTTACATGATGTGCGAAGGGTGCTGGTATTTGGCCCTTATACTGGCCC
689 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
20161389 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
754 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
20161454 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTACAAATGCTCACAAAA
819 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * **
20161513 TCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCAAGCCAAGAAAAATGGAAGGATCACG
1 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * * * * *
20161578 TCTACCAAGTTTGGCGCCAAAACTCCTTCCTAGAAAACTTTAAAAAATC-CTGAACCGTAAATAG
66 TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAG
* *
20161642 TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
130 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
20161707 GGACCATTATATGAATTTGCAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
195 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* *
20161772 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTAC
260 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * *
20161837 CCGCCCGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCTTCGGCATACGGAGTTCATTCCTAGTCT
325 CCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
20161902 AAGATCAGA-CTGAACCAAGGGTTGCGGTAGCAGGATTGGTAGCACGTAGAGAGGGACCCGACCG
390 AAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCG
* * * *
20161966 ATCCCTGACTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACTCTCATTCCGTGGGTTG
454 ATCCC-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
20162031 AGTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGACCGGACTAAGGGTTACGACAGCACAT
518 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACAT
* ** *
20162096 GCTGGGCTCGAGCATGTGCTGGTGTCATATTTTTCTTTACCGGGGCACCATCGCT-GGAGCATCG
583 GCTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCGCTCGGAGCATCA
* * * *
20162160 TCAGAGAACATGATCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGAGGGGGTGTGCACACA
648 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACA
* *
20162224 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAG
712 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
20162289 AACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
777 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
20162354 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
842 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
20162390 TCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGGGCATGTCAACAAAAATACAAGGATCACG
1 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* *
20162455 TCGACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGT
66 TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
* * * *
20162520 TTCAAAAAAT-GTGAAAAATAGAGAACGAGTCGTCTGGCCATGAAACTTCACGTGATGGCTTCAG
131 TTC-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
20162584 GGACCATTGTATGAATTTACAAGCCATAAAAATAGAATTGGCATGCAGAAATATAAAGATGTGCC
195 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
20162649 TAAACCCACCTACGACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGC
260 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * *
20162714 CTGCCCACCTGCCCGCCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
325 C--CGC-CC-GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
20162779 GTCTAAGATCAGACCAGATCAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAAAGGGGGACCC-A
386 GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGA
* * ** * * *
20162843 GCTGATCCCCAGCTTGCGCATCCTACCCCTCTGGCTGGCTGAGCGCCTGCACGCTCATTTCGTGG
451 -CCGATCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * * *
20162908 GTTGACTTAGGCATACAGAGTTCATTCCCTA-TCTAAGGTTGGACCGAACCGAGGGTTGC-AGCA
514 GTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCGGACCGGACCAAGGGTTGCGA-CA
* * * * * *
20162971 GCACATGCTGGGCTC-AGGCATGTGCTGGTGCCGCATTTCTCTTCCCCAGGGCACCAACG-TCGG
577 GCACATGCTGGGCTCGA-GCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCGCTCGG
* * * *
20163034 AGCATCATCGGAGAACCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGCCGAGGGGTGTG
641 AGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
*
20163099 CGCACATGATGTGCTATGGGTGCTGGTA
706 CGCACATGATGTGCGATGGGTGCTGGTA
20163127 TTTGAAACTT
Statistics
Matches: 1407, Mismatches: 176, Indels: 72
0.85 0.11 0.04
Matches are distributed among these distances:
876 8 0.01
877 550 0.39
878 8 0.01
879 2 0.00
880 7 0.00
881 330 0.23
882 15 0.01
889 1 0.00
890 1 0.00
891 286 0.20
892 1 0.00
896 1 0.00
899 2 0.00
900 1 0.00
901 2 0.00
902 9 0.01
903 183 0.13
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (877 bp):
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGAT
CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCT
GGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCGCTCGGAGCATCATCG
GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAA
Found at i:20163633 original size:565 final size:566
Alignment explanation
Indices: 20162560--20163677 Score: 1462
Period size: 565 Copynumber: 2.0 Consensus size: 566
20162550 CGTCTGGCCA
* *
20162560 TGAAACTTCACGTGATGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGAATTGG
1 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGAATTGG
** ** *
20162625 CATGCAGAAATATAAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCATGGCTTGCGCATC
66 CACACAGAAATATAAAGATGCACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
* * * *
20162690 CCATCTCTCTGGCCGGCGTAGTGCCTGCCCACCTGCCCGCCCGCTCGCTTGTTTCGTCGGTTGGC
131 CCATCTCTCTGGCCGACGTAGTGCCCGCCCACCTGCCCACCCGCTC-C-TGTTTCGTCGGATGGC
* * * * *
20162755 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGGCAGCAGGATC
194 TTAAGCAAACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAAGATC
* * * * *
20162820 GGTAGCACGCAAAGGGGGACCCAGCTGATCCCCAGCTTGCGCATCCTACCCCTCTGGCTGGCTGA
259 GGCAGAACGCAAAGGGGGACCCAGCCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCTGACTGA
* * * *
20162885 GCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTATCTAAGGTTGG
324 GCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCTATCTAAGATCGG
* * *
20162950 ACCGAACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTCTCTTC
389 ACCGAACCGAGGGTTGCAGCAGCACATACTGGGCTCAGGCATGTGCTGATGCCACATTTCTCTTC
* * * *
20163015 CCCAGGGCACCAACGTCGGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTTCGGCGATC
454 CCCAGGGCACCAACGTCAGAGAATCATCGGAGAACCTGACCGAC-ACATTGGGGTTCCGACGATC
20163080 GGGGGGGCCGAGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTATT
518 GGGGGGGCCGAGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTATT
* *
20163129 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
1 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGAATTGG
* * * * *
20163194 CACATAGAAATATGAAGATGCACCTAAATCGACCTACCACCCTATTGATCCATGGCTTGCGCATC
66 CACACAGAAATATAAAGATGCACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
* * * *
20163259 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCTGCCCATCCGCT-C-GTTTCTTCGGATGGCTT
131 CCATCTCTCTGGCCGACGTAGTGCCCGCCCACCTGCCCACCCGCTCCTGTTTCGTCGGATGGCTT
* * *
20163322 AATCAAACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGG
196 AAGCAAACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAAGATCGG
* ** * *
20163387 CAGAACGCAGAGGGGGACCC-GACCGATCGTCGGGTTGCGCATCCCACCCCTCTGGCCT-ACTGA
261 CAGAACGCAAAGGGGGACCCAG-CCGATCCCCAGCTTGCGCATCCCACCCCTCTGG-CTGACTGA
* * * *
20163450 GTGCCCGCACGGTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCG
324 GCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCTA-TCTAAGATCG
* ** * * * * *
20163514 GATCGGGCTGAGGGTTG-TGACAGCACATACTGGGCTCGGGCATGTGCTGATGCCATATTTTTCT
388 GACCGAACCGAGGGTTGCAG-CAGCACATACTGGGCTCAGGCATGTGCTGATGCCACATTTCTCT
** * *
20163578 TCGTCGGGGCACCATCAC-T-AGAGAATCGTCGGAGAACCTGACCTGTA-ACATTGGGGTTCCGA
452 TCCCCAGGGCACCA--ACGTCAGAGAATCATCGGAGAACCTGACC-G-ACACATTGGGGTTCCGA
*
20163640 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
513 CGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGC
20163678 GAAGGGTTCT
Statistics
Matches: 473, Mismatches: 68, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
564 3 0.01
565 307 0.65
566 4 0.01
567 4 0.01
569 155 0.33
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (566 bp):
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGAATTGG
CACACAGAAATATAAAGATGCACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
CCATCTCTCTGGCCGACGTAGTGCCCGCCCACCTGCCCACCCGCTCCTGTTTCGTCGGATGGCTT
AAGCAAACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAAGATCGG
CAGAACGCAAAGGGGGACCCAGCCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCTGACTGAGC
GCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCTATCTAAGATCGGAC
CGAACCGAGGGTTGCAGCAGCACATACTGGGCTCAGGCATGTGCTGATGCCACATTTCTCTTCCC
CAGGGCACCAACGTCAGAGAATCATCGGAGAACCTGACCGACACATTGGGGTTCCGACGATCGGG
GGGGCCGAGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTATT
Found at i:20164392 original size:26 final size:25
Alignment explanation
Indices: 20164356--20164407 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
20164346 GTTGACTTAG
20164356 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
* *
20164382 GCATATGGAGTTCATCCTAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
20164407 G
1 G
20164408 ATCGGACGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:20165317 original size:26 final size:26
Alignment explanation
Indices: 20165256--20165323 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
20165246 TGGGTTGTCT
*
20165256 TAGGCATACGGAGTTCATTCCAAGTT
1 TAGGCATACGGAGTTCATTCCAAGTC
* * *
20165282 TAAGCTTACGGAGTTCATTCTC-CGTC
1 TAGGCATACGGAGTTCATTC-CAAGTC
20165308 TAGGCATACGGAGTTC
1 TAGGCATACGGAGTTC
20165324 TTCGGACCGG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 34 0.97
27 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCAAGTC
Found at i:20166204 original size:26 final size:26
Alignment explanation
Indices: 20166168--20166220 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20166158 GTTGACTCAG
*
20166168 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20166194 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20166220 G
1 G
20166221 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20166317 original size:11 final size:11
Alignment explanation
Indices: 20166301--20166330 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
20166291 GTCAGGGCAC
20166301 CATCGTCGAAG
1 CATCGTCGAAG
20166312 CATCGTCGAAG
1 CATCGTCGAAG
20166323 CATCGTCG
1 CATCGTCG
20166331 GAGAACCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (11 bp):
CATCGTCGAAG
Done.