Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 116 of 195
Found at i:20166394 original size:912 final size:904
Alignment explanation
Indices: 20163483--20166970 Score: 4690
Period size: 911 Copynumber: 3.9 Consensus size: 904
20163473 GTTGACTTAG
* * *
20163483 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGGCTGAGGGTTGTGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGACAGCACATGCTGGG
* * * *
20163548 CTCGGGCATGTGCTGATGCCATATTTTTCTTCGTCGGGGCACCATCAC-TAGAGAATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACGTCGAGCATCGTCGGAG
* ** *
20163612 AACCTGACCTGTAACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
* * *
20163677 CGAA-GGGTTCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAA
196 C-AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTAA
*
20163741 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
20163806 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
20163871 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAA
* * ** *
20163936 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * **
20164001 GGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGTTATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
20164066 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGC
585 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGC
* * * * *
20164131 GCATCTCGTCTCTCTAGCCGGA-GTAGTGCTCGCCCGTCCGCCTGCCTGTCCGCTTGTTTCGTCG
650 GCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCG-CC-CC--CCTGCCCGCTCGTTTCGTCG
* * ** * ** *
20164195 GTTGGCTTAGGCATACGGAGTTGATTCCCAGTCTAAGATTGGACCAGACCA-AGGGTTACGACAG
710 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTGTGGCAG
* * * * * *
20164259 AAGGATCGGTAGCACGCAGAGGGGGACCC-AGCTGATCCCCTGCTTGCGCATCCCACCCCTTTGG
774 TAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGATTGCGCATCCCACCCCTCTGG
* * **
20164323 CCGGCT--G-A-----ACGTTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
838 CTGGCTGAGCAGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
20164380 AA
903 AA
* * * * * * *
20164382 GCATATGGAGTTCA-TCCTAGTCTAAGATCGGACGGGACCGAGGATTGTGGCAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGACAGCACATGCTGGG
* * * *
20164446 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGTACCAT--CGTCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACGTC-GAGCATCGTCGGA
* * * *
20164509 GAACCTGACCAGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATG
130 GAACCTGACCGGCGACATTGGGGTTCCGACGATCG-GGGGGGCTGGGGGGTGTGCGCACATGATG
* * * * * *
20164574 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATGCGTC-ACAAACCTCAAGAACTC
194 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTA
* * *
20164638 TCACCCACTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
20164703 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
20164768 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAA
* *
20164832 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
20164897 GTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGA
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
20164962 AAGTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCAACCACCC-ATCGATCCACGGCTTG
584 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTG
* * * *
20165026 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTTGCCCACTTGTTTCTTCG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CC--C-TGCCCGCTCGTTTCGTCG
* * * *
20165091 GTTGGTTTAGGCATACGGAGTTCA-TCCCAATCTAAGATCAGACCGAACAGAGGGTTGTGGCAGT
710 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGCAGT
* * * * *
20165155 AGGATCGGCAGCATGCAGAGGGGGACCCGACCGATTCCTGGGTTGCGCATCCCGCCCCTCTGGCC
775 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGATTGCGCATCCCACCCCTCTGG-C
* * *
20165220 T-GCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCCAAGTTT
839 TGGCTGAGCAG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
20165283 AA
903 AA
*
20165285 GCTTACGGAGTTCATTCTCC-GTCTAGGCATACGGAGTTCTTCGGACCGGACTGAGGGTTGTGAC
1 GCATACGGAGTTCATTC-CCAGTCT----A-A--GA-----TCGGACCGGACTGAGGGTTGTGAC
* *
20165349 AGCACATGCTGGGCTCGGGCA-----T-GTGCCGCATTTTTCTTCGTCGGGGCACCATTCCCG--
53 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA-TCACGTC
* * * *
20165406 GAGCATCGTCGGAGAACCTGAACGGTGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGAAG
117 GAGCATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCTGGGGGG-TG
**
20165471 TGCGCACATGATGTGCAATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCAACAA
181 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAA
20165536 ACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
246 ACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
20165601 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
311 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * ** * *
20165666 AGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCTTGT-TGACAAAGTTTCGGGCCAA
376 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAA
* * * * *
20165730 AAAT-ATTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTAAAAAATCTTGAAAAAT
440 AAATCCTTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
*
20165794 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
504 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
20165859 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTA
569 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTA
*
20165924 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCACCCT-CCCG
634 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCTGCCCG
* * *
20165988 CTCGTTTCGTCGGTTGGCTCAGGCATACGAAGTTCATTCCCAGT-TGAAGATCAGACTGGA-TGA
698 CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCT-AAGATCAGACCGGACAGA
*
20166051 GGGTTGTGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGATTGCGCATCC
762 GGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGATTGCGCATCC
* *
20166116 CACCCCCCTGGCTGGCTGAGCAGCCGCACGCTCGTTTCGTGGGTTGACTCAGGCATACGGAGTTC
827 CACCCCTCTGGCTGGCTGAGCAGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
20166181 ATTCCCAGTCTAA
892 ATTCCCAGTCTAA
* * * *
20166194 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTGTGACAGCACATGCTGG
*
20166258 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCGTCGAAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---T-----CA-CGTCG-AG
* *
20166323 CATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCAACGATCGGGGGGG-TGGGGGGTCTGCG
120 CATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCG
* * *
20166387 CACATGATGTCCAATGGGTGCTGGTACTTGGCCCATA-ATTGGCCCCCTATCCCTCATCAAACCT
185 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCT
*
20166451 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
250 CGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
20166516 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCT
315 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
20166581 GAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
380 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
* * * * *
20166646 CTTCCGAATAAATTTTACAAAAAT-CGGAACCGCAAAAAGTTTCAAAAATCCT-AAAAAAAGGAA
445 CTTTCGAAAAAATTTTA-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA-GAA
* * *
20166709 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTACGAATTTACAAGC
508 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* ** * * * *
20166774 CATAAAAATGGCATTGGAACATAGGAATATGAAGTTGTGCCTACACCCACCTACCACCCTATCGA
573 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGA
* *
20166839 TCCACGGGTTGCGCTTCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--CCCC--CCCGCTCGT
638 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCTGCCCGCTCGT
* * * * * *
20166900 TTCTTCAGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTG
703 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTG
*
20166965 CGGCAG
768 TGGCAG
20166971 CACATGCTGG
Statistics
Matches: 2284, Mismatches: 232, Indels: 137
0.86 0.09 0.05
Matches are distributed among these distances:
893 1 0.00
894 3 0.00
895 88 0.04
896 87 0.04
897 205 0.09
898 321 0.14
899 79 0.03
902 3 0.00
903 84 0.04
904 7 0.00
905 3 0.00
907 55 0.02
908 21 0.01
909 197 0.09
910 158 0.07
911 606 0.27
912 212 0.09
913 66 0.03
914 49 0.02
916 39 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (904 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACGTCGAGCATCGTCGGAG
AACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTAAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCTGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGCAGTAGGATC
GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGATTGCGCATCCCACCCCTCTGGCTGGCTGA
GCAGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20167580 original size:715 final size:714
Alignment explanation
Indices: 20166194--20169398 Score: 4735
Period size: 715 Copynumber: 4.5 Consensus size: 714
20166184 CCCAGTCTAA
* *
20166194 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
20166259 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCGTCGAAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA---TC---G--TCG--G-AGC
* * * ** *
20166324 ATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCAACGATCGGGGGG--GTGGGGGGTCTGCG
120 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCG-GGGGGGTGTGCG
* * * *
20166387 CACATGATGTCCAATGGGTGCTGGTACTTGGCCCATA-ATTGGCCCCCTATCCCTCATCAAACCT
184 CAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
20166451 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
249 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
20166516 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCT
314 GTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
20166581 GAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
379 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAACACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * *
20166646 CTTCCGAATAAATTTTACAAAAAT-CGGAACCGCAAAAAGTTTCAAAAATCCT-AAAAAAAGGAA
444 CTACCGAAAAAATTTTA-AAAAATCCGAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA-GAA
* * *
20166709 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTACGAATTTACAAGC
507 AACAAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * *
20166774 CATAAAAATGGCATTGGAACAT--AGGAATATGAAGTTGTGCCTACACCCACCTACCACCCTATC
572 CATAAAAATGCCATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
** *
20166837 GATCCACGGGTTGCGCTTCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCCGCTCGTTT
635 GATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCCGCTCGTTT
*
20166902 CTTCAGTTGGCTTAG
700 CTTCGGTTGGCTTAG
* *
20166917 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
20166982 CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
20167047 ACCCGACCAACGGCATT-GGGTTCCGGCGATCGAGGGGGCCGGGGGGGTGCGCGCAAATGAGGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCAAATGATGTG
* * *
20167111 CGGTGGGTGCTGGTACTTGGCTCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
20167176 ACCCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCGATTAAAGTGTATGAAA
260 A-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
20167241 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
20167306 TTGCATGCCAAAAAAAATACAAGGAACACGTCTACCAAGTTTGGGGCCAGAACTCCTACCGAAAA
389 GTGCATGCCAAAAAAAATACAAGGAACACGTCTACCAAGTTTGGGGCCAAAACTCCTACCGAAAA
** * *
20167371 AATTTTAAAAAATTTGAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGCAAACAAATCATCT
454 AATTTTAAAAAATCCGAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAATCGTCT
* * *
20167436 TGCCATGAAGCATCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGCC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCC
* * * *
20167501 ATTGGCATGCTGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCATGACTTGG
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
*
20167566 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCCGCTCGTTTCTTCGGTTGGCTTA
20167631 G
714 G
* * * * *
20167632 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACTAGACCAAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** ** **
20167697 CTCGGGCATGTGCTGGTGTGGCATTTTTCTTCGCCGGGGCGTCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
20167762 ACCCGACCGACGGCATT-GGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCAAATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCAAATGATGTGC
* *
20167826 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
20167891 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
20167956 GAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
326 GAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
20168021 GCATGCCAAAAAAAATACAACGATCACGTCTACCAAGTGTGGGGCCAAAACTCC-ATCCGAAAAA
391 GCATGCCAAAAAAAATACAAGGAACACGTCTACCAAGTTTGGGGCCAAAACTCCTA-CCGAAAAA
20168085 ATTTTAAAAAATCCGAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAATCGTCTT
455 ATTTTAAAAAATCCGAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAATCGTCTT
*
20168150 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGCCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCA
*
20168215 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-AGCTTGC
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGC
* * * *
20168279 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGACCGCCTCCCGCTCTCCCGCTCGTTTCTTTGGT
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCC-C-C-CCCGCTCGTTTCTTCGGT
20168344 TGGCTTAG
707 TGGCTTAG
* *
20168352 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
20168417 CTCGGGCATGTGCTGGTGTTGCATTTTTCTTCATCGAGGCACCATCGTCGGAGCGTCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
20168482 ACCTGACCGACGGCATTGGGGTTACGGCGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCAAATGATGTG
*
20168547 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
20168612 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
20168677 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
20168742 TGCATGCCGACAAAAATACAAGGATA-ATGTGTACCAAGTTGAGGGGGCAAAACTCCTTCCGAAA
390 TGCATGCCAAAAAAAATACAAGGA-ACACGTCTACCAAGTT-TGGGGCCAAAACTCCTACCGAAA
* ** * *
20168806 AAATTTAAAAAAATCCGAAATTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
453 AAATTTTAAAAAATCCGAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAATCGTC
* *
20168871 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGC
* *
20168936 CATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * *
20169001 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCATTTCTTC-GTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCCGCTCGTTTCTTCGGTTGGCTT
20169065 AG
713 AG
* * * *
20169067 GCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
20169132 CTCGAGCATGTGCTGGTGCTGCATTTCTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
20169197 ACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGTGGCGGGCTGTGGGGTGTGCGCAAATG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATC--GGGG-GGCCGG--G-GGGGTGTGCGCAAATG
*
20169262 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
20169327 CTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
20169392 GAAATGG
320 GAAATGG
20169399 GGACCATTGT
Statistics
Matches: 2263, Mismatches: 190, Indels: 61
0.90 0.08 0.02
Matches are distributed among these distances:
711 13 0.01
712 34 0.02
713 437 0.19
714 134 0.06
715 707 0.31
716 26 0.01
717 7 0.00
718 2 0.00
719 2 0.00
720 306 0.14
721 13 0.01
722 248 0.11
723 334 0.15
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (714 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCAAATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGAACACGTCTACCAAGTTTGGGGCCAAAACTCCTACCGAAAAAA
TTTTAAAAAATCCGAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAATCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCCGCTCGTTTCTTCGGTTGGCTTAG
Found at i:20171914 original size:26 final size:26
Alignment explanation
Indices: 20171878--20171930 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20171868 GATAACTTAG
*
20171878 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
20171904 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
20171930 G
1 G
20171931 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:20173460 original size:901 final size:900
Alignment explanation
Indices: 20171161--20174430 Score: 4554
Period size: 905 Copynumber: 3.6 Consensus size: 900
20171151 GAGGTACCGA
*
20171161 CGATCGGGGGG-CAGTAGGGGT-TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
1 CGATCGGGGGGCCAG--GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
20171224 ATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
64 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTT
* ** * *
20171289 ACAGGTTTGTTTTCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGGTCACAA
129 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
20171354 AAGCTTGTACACTTCGAGATTTTAGCTG-ATGTTTTTCGTGCATGCCAACAAAAATACAAGGATC
194 AATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTCGTGCATGCCAACAAAAATACAAGGATC
* * ** *
20171418 ACGTCTACCAAGTTTGGCACCAAAACTCCTTTCAAAAAAATTTTAAAAAATC-CTGAACCGTAAA
259 ACGTCTACCAAGTTTGGGACCAAAAATCCTACCCAAAAAATTTTAAAAAATCTC-GAACCGTAAA
*
20171482 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
323 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
20171547 AAGGGACCATTGTATGAATTTACAACCCATAAACATGGCATTGTCACGTAGAAATATGAAGATGT
388 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * * *
20171612 GCCTAAACCCACCTACCACCCTATCGATCC-GGGCTTGCGCATCCTGTCTCTCTGGCCGGCATAG
453 GCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
*
20171676 TGCCCGCCCGCCCGCCTGCACGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAA
518 TGCCCGCCCGCCCG--T-CACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * *
20171740 TCTAAGATCCGATC-GGACTGAGGGTTGCGGTAGCAGGATCGACAGCATGTAGAGGGGGACCCGA
580 TCTAAGATCAGATCAGGACTGAGGGTTGCGGCAGCAGGATCG-CAGCATGTAGAGGGGGACCCGG
* * * * ** * *
20171804 CCGATCCCCAGCTTGCACATTCTACACCTCTGGCCGGCTGAGCGCCTGCACGATCGTTTCGTGGG
644 CTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
* * * * *
20171869 ATAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATC
709 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATC
* ** *
20171934 AGACCAGATCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCACATTTTTCT
774 AGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTTAGGCATGTGCTGGTGCCACATTTTTCT
*
20171999 TCACTGGGGCACCATCGCCGGAGTATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGG
839 TCACTGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGG
* *
20172061 CGATCGGGGGG-TAGGGGGT-TGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATAT
1 CGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
20172124 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTAC
66 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTAC
* *
20172189 AGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTTACAAAA
131 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
20172253 TCTTGTACACTTCGACTTTTTTGCTGAAAT-TTTTT-GTGCATGCCAACAAAAATACAAGGATCA
196 TCTTGTACACTTCAAGTTTTTAGCTG-AATGTTTTTCGTGCATGCCAACAAAAATACAAGGATCA
* * * *
20172316 TGTCTACCATGTTTGGGGCC-AAAA-CCTTTACCCAAAAAATTTTAAAAAATCTCGAACTGTAAA
260 CGTCTACCAAGTTTGGGACCAAAAATCC--TACCCAAAAAATTTTAAAAAATCTCGAACCGTAAA
* * *
20172379 AAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGGAGGCTT
323 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
20172444 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGCTGT
388 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* *
20172509 GCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCAGCGTAG
453 GCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
*
20172574 TGCCCGCCCGCCCGTC-CGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
518 TGCCCGCCCGCCCGTCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
20172638 AAGATTAGA-CAGGAATGAGTGTTGCGGCAGTAGGATCAGTAGCATGTAGAGGGGGACCCGGCTG
583 AAGATCAGATCAGGACTGAGGGTTGCGGCAGCAGGATC-GCAGCATGTAGAGGGGGACCCGGCTG
*
20172702 ATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTG
647 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTG
** * * * *
20172767 ACTTAGTTATACGGAGTTCTTTCCCAATCTAAGCATACAGAGTTCATTCTCAGTCGAAGTTCAGA
712 ACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGA
* * * * *
20172832 CTAGACCAAGGGTTGCGGTAGCACATGCTGGGCTTAGGCATGTACTGGTGCCGCATTTTTCTTCG
777 CCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTTAGGCATGTGCTGGTGCCACATTTTTCTTCA
* * *
20172897 CTGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCAACGGCATTGGGGTTCCGG
842 CTGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGG
* * * *
20172956 CGATCGGGGTGGCCGAGGGGGTTGTGCACACATGATGTGTGATGGGTGCCGGTACATGGCCCTTA
1 CGATCGGGG-GGCC-AGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
20173021 TATTGGCCCGCTATCTCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTT
63 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTT
* *
20173086 TATAGGTTAGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
128 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
20173151 AAATCTTGTACACTTCAAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGAT
193 AAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTCGTGCATGCCAACAAAAATACAAGGAT
*
20173215 CACGTCTACCAAGTTTGGGGCCAAAAATCCTACCCAAAAAATTTTAAAAAATCTCGAACCGTAAA
258 CACGTCTACCAAGTTTGGGACCAAAAATCCTACCCAAAAAATTTTAAAAAATCTCGAACCGTAAA
* * *
20173280 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCGTGAAACTTCAGGTGAAGGCTT
323 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
** * *
20173345 AAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCAGGCAGAAATATGAAGGTGT
388 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * * *
20173410 GCCTAAACCCACCTACTACACTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGCCCGCC
453 GCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-GCG-T
* ** * * * *
20173475 CGCCCACCCGCCCGCCCG-CCCGCTTGTTTTGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCA
516 AG--TGCCCGCCCGCCCGTCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * * * * * *
20173539 GTCTAAGATCAGATCA-GACCAAGGGTTGTGGCAGCAAGATTGGCAGCAAGCAGAGGGGGACCCA
579 GTCTAAGATCAGATCAGGACTGAGGGTTGCGGCAGCAGGA-TCGCAGCATGTAGAGGGGGACCCG
* * * * * *
20173603 G-TCGATCCTCGGCTTGTGCATCCCGCCTCTCTGGCCGGTTGAGCGCCCGCACGCCCGTTTTCGT
643 GCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCG-TTTCGT
20173667 GGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAG
706 GGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAG
* ** * * * * * * *
20173732 ATCGGACCAGACTGAGCGTTGCGACAGCACATACTGGGC-TCGAGCATGGGCTGGTGCCATATAT
771 ATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTTAG-GCATGTGCTGGTGCCACATTT
* ** * * * *
20173796 TTCTTCCCCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCGGCGGTATTGGGGTTCCG
835 TTCTTCACTGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
*
20173861 A
900 G
*
20173862 TGATCGGGGGGGCCAGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
1 CGATC-GGGGGGCCAG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
20173927 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
64 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTT
* * *
20173992 ACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCTAATGGTCACAA
129 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
20174057 AATCTTGTACACTTCAAGTTTTTAGCT-AATGTTTTTCGTCCATGCCAACAAAAATACAAGGATC
194 AATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTCGTGCATGCCAACAAAAATACAAGGATC
* * * ** * * *
20174121 ATGTCTACCAAGTTTGGGATCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTTGAACCGTAAAA
259 ACGTCTACCAAGTTTGGGACCAAAAATCCTACCCAAAAAATTTTAAAAAATCTCGAACCGTAAAA
*
20174186 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
324 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * * * *
20174251 AGGGACCATTG-ATGAATTTACAAACCATTAACATGGCATTGGCACGCAAAAATATGAAGATATG
389 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* * * * *
20174315 CCTAAACCTACCTACCACCCTA-CTGATCCACGGCTTGCACATCCTGTCTCTCTGGTCGGCGTAG
454 CCTAAACCCACCTACCACACTATC-GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
20174379 TGCCCGCCCGGCCGCCCACTCGCTCATTTCGTCGGTTGGCTTAGGCATACGG
518 TGCCCGCCCGCCCG-TCA--CGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
20174431 GCTCGGGCAT
Statistics
Matches: 2107, Mismatches: 227, Indels: 68
0.88 0.09 0.03
Matches are distributed among these distances:
894 30 0.01
895 301 0.14
896 7 0.00
897 262 0.12
898 204 0.10
899 3 0.00
900 175 0.08
901 301 0.14
902 8 0.00
903 6 0.00
904 126 0.06
905 498 0.24
906 182 0.09
907 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
CGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTCGTGCATGCCAACAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGACCAAAAATCCTACCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
CCGCCCGCCCGTCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGATCAGGACTGAGGGTTGCGGCAGCAGGATCGCAGCATGTAGAGGGGGACCCGGCTGATCC
CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTT
AGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAG
ACCAAGGGTTGCGGCAGCACATGCTGGGCTTAGGCATGTGCTGGTGCCACATTTTTCTTCACTGG
GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGG
Found at i:20173475 original size:4 final size:4
Alignment explanation
Indices: 20173466--20173497 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
20173456 GTCTCTTTGG
*
20173466 CCGC CCGC CCGC CCAC CCGC CCGC CCGC CCGC
1 CCGC CCGC CCGC CCGC CCGC CCGC CCGC CCGC
20173498 TTGTTTTGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.03, C:0.75, G:0.22, T:0.00
Consensus pattern (4 bp):
CCGC
Found at i:20173715 original size:26 final size:26
Alignment explanation
Indices: 20173679--20173731 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20173669 GTTGACTTAG
20173679 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
20173705 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20173731 G
1 G
20173732 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20175000 original size:26 final size:26
Alignment explanation
Indices: 20174964--20175013 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20174954 GACTTAGGCA
*
20174964 TACGGAGTTCATACCCAATCTAAGCG
1 TACGAAGTTCATACCCAATCTAAGCG
* *
20174990 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATACCCAATCTAAG
20175014 ATCAGACCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATACCCAATCTAAGCG
Found at i:20175893 original size:26 final size:26
Alignment explanation
Indices: 20175863--20175915 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20175853 GTTGACTTAG
20175863 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * * *
20175889 GCATATGCAGTTCCTTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20175915 G
1 G
20175916 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20177242 original size:26 final size:26
Alignment explanation
Indices: 20177206--20177258 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20177196 GTTGACTTAG
20177206 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
20177232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20177258 G
1 G
20177259 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20178137 original size:26 final size:26
Alignment explanation
Indices: 20178106--20178158 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20178096 GTTGACTTAG
*
20178106 GCATACGGAGTACATTCCTAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
*
20178132 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
20178158 G
1 G
20178159 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:20180509 original size:894 final size:888
Alignment explanation
Indices: 20178391--20181730 Score: 4383
Period size: 895 Copynumber: 3.8 Consensus size: 888
20178381 CCCCCTTAAT
* *** * *
20178391 ATGCTGGGCTCTG-GCACGTGCTGGTGATGTATTTTTCTTCGTCGGGGCACCATCGTCTGAGCAT
1 ATGCTGGGCTC-GAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
* * *
20178455 CGCCAGAGAACCTGACCTGCGGCATTGGGGTTCCGACGATCGGGGGGTC-G-GGGGGTGTGCGCA
65 CGCCGGAGAACCTGA---GCGGCATTGGGGTTCAGACGATCGGGGGGCCGGAGGGGGTGTGCGCA
* *
20178518 CATGATGCATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
127 CATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
20178583 AGAACTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGT
192 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
20178647 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTGA
257 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
20178712 ATTTTTTTGTGCAAGCCAAAACAAAAATACAAGGATCATGTC-GCCAAGTTTGGGGCCAAAACTC
322 ATTTTTTTGTGCATGCC--AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
** ** *
20178776 CTTCCGAAAAAATTTT-AAAAATCCTAAACCGTTAAGAGTTTCAAAAATCATGAAAAATAGAAAA
385 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* *
20178840 CGAGTCGTCTAGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
450 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
**
20178905 TAAAAATGGCATTGGCATTCAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCTTATCGAT
515 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACC-TATCGAT
* * * * * *
20178969 CCA-CGCTTGCACGTCCTGTCTCTCTGGCCGACGTAGTG-CCCGCCCGCCCGCTAGTTTCCCTCG
579 CCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGACCCGCCCGCCCGCTCGTTT-CGTCG
* * * * *
20179032 GTTGGCTTAGGCTTACGAAGTTCATTCCCAGTCTAAGA-TAGGACCAGATCGAGGGTTGCAGCAG
643 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTA-GACTAGACCGAGGGTTGCGGCAG
** * * * *
20179096 CAGGATCAACAGCACGTAGAGGGGGACTTGGCCGAT-ATCGACTTACGCATCTCGCTCCTT-TGG
707 CAGGATCAACAGCACGTAGA-GGGGACCCGACCGATCCTCG-CTTGCGCATCTCGC-CCTTCTAG
* * * *
20179159 CTGACTGACCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAG-TCATTCCCAGTCT
769 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
20179223 AAGAATGCAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAC
834 AAGAATG--GAGTTCATTCCCAATCTAAGATCGGAC--GACCGAGGGTTACGGCAGCAC
** *
20179282 ATGCTGGGCTC-AGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCAT
1 ATGCTGGGCTCGA-GCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
* * * * *
20179346 CACCGGAGAACCTGACCAGCGGCATTAGGGTTCTGTCGATCGGGGGGCTCGGGGGGGGTGTGCGC
65 CGCCGGAGAACCTG---AGCGGCATTGGGGTTCAGACGATCGGGGGGC-CGGAGGGGGTGTGCGC
* * *
20179411 ACATGATGTACGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATTCCTCATCAAACCTT
126 ACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
20179476 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCTATTAAAG
191 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
20179541 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
256 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
20179606 AACTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTC
321 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* ** ** *
20179671 TTTCGAAAAAATTTTAAAAAATCTTGAA-CGACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
386 TTCCGAAAAAATTTTAAAAAATCCCGAACCG-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
20179735 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
450 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
20179800 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATC
515 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATC
* * * *
20179865 CATGGCTTGCGCATTCCGTCTCTCTGGCTGGCGTAGTG-CCCGCCCGCCCGCTCGTTTTGTCGGT
580 CATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGACCCGCCCGCCCGCTCGTTTCGTCGGT
* *
20179929 TGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATTAGACTAGACCGAGGGTTGTGGCAGCAG
645 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTAGACCGAGGGTTGCGGCAGCAG
* * *
20179994 GATCAACAGCATGTAGAGGAGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCTTCTAGCCAA
710 GATCAACAGCACGTAGAGG-GGACCCGACCGATCCTC-GCTTGCGCATCTCGCCCTTCTAGCCGA
* *
20180059 CTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAAGC
773 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-
20180124 AAATGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAC
837 -AATGGAGTTCATTCCCAATCTAAGATCGGA-C-GACCGAGGGTTACGGCAGCAC
* * *
20180179 ATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTTGTCGAGGCACCATCGCTGGAGCATC
1 ATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
* * * * *
20180244 GCTGGAGAACCTGAGCGGCATTAGTGTTTCAG-CGATCAAGGGGGCCGGAGGGGATGTGCGCACA
66 GCCGGAGAACCTGAGCGGCATT-GGGGTTCAGACGATC-GGGGGGCCGGAGGGGGTGTGCGCACA
** * *
20180308 TGATGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAG
129 TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
20180373 AACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
194 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
20180438 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAAT
259 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
20180503 TTTTTTGTGCATGCCAA-AAAAATATC-AGGATCACGTCTCCCAAGTTTGGGGCCAAAACTCCTT
324 TTTTTTGTGCATGCCAACAAAAATA-CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
20180566 CTGGAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATTGAAAACGA
388 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
** *
20180631 GTTATCTTGCCATGAAACTTCACGTGAAGGGTTAA-GGACCATTGTATGAATTTACAAGCCATAA
453 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
20180695 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCATCTACCAGCCTATCGATCCAT
518 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCAT
* *
20180760 GGCTTGCGCATCCCGTTTCTCTGGCCGACGTAGTGCCGACCCGCCCGCCCGCCCACTTGTTTCGT
583 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---GACCCGCCCGCCCG----CTCGTTTCGT
* * * *
20180825 CAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA-TCGGACCGAGGGTTGCGGC
641 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACT-AGACCGAGGGTTGCGGC
* * * * * * *
20180889 AGCAGGATCGATAGCACGTAGAAGGGGACCGGACCGATCCCCGGCTTGTGCATCTGGCCCCTCTA
705 AGCAGGATCAACAGCACGTAG-AGGGGACCCGACCGATCCTC-GCTTGCGCATCTCGCCCTTCTA
*
20180954 GCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
768 GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
20181019 T----A---AG----------ATC-AA-ATC-G--GACTGAGGGTTACGGCAGCAC
833 TAAGAATGGAGTTCATTCCCAATCTAAGATCGGACGACCGAGGGTTACGGCAGCAC
* * ** *
20181053 ATGCTTGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCAGAG-A--
1 ATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
* * * * * * * *
20181115 ACC--TG-ACC-GA-TGACATTGGGTTTCCGGCGAACGGGGGGGCC-GAGGGGGGTGTGCGCACA
66 GCCGGAGAACCTGAGCGGCATTGGGGTTCAGACGATC-GGGGGGCCGGA-GGGGGTGTGCGCACA
* *
20181174 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAG
129 TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * * *
20181239 AACCCATACCCCCTTAAAAAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGT
194 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
20181304 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT
259 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
20181369 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCACAAAAATCCTT
324 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTT
*
20181433 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
388 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
20181498 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAA
453 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * ** * * * * *
20181563 AAATCTCACTGGCACATAGAAATATGAGGATGTACCTAAACCCACCTACCACCCTATCAATCCAC
518 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCAT
* * * *
20181628 GGCTTACGCATCCCGTCTCTCTGGCCGACATAGTGCTCGCTCGCCCACCCGCCCGTTCGTTTCGT
583 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-AC-C-CG----CCCGCCCGCTCGTTTCGT
*
20181693 CGGTTGGCTTAGGCATACGGAGTTCCTTCCCAGTCTAA
641 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
20181731 CATCAAACAA
Statistics
Matches: 2190, Mismatches: 208, Indels: 125
0.87 0.08 0.05
Matches are distributed among these distances:
865 10 0.00
866 235 0.11
867 131 0.06
868 162 0.07
869 1 0.00
871 1 0.00
872 8 0.00
873 1 0.00
874 73 0.03
878 1 0.00
879 3 0.00
880 2 0.00
881 3 0.00
891 95 0.04
892 121 0.06
893 151 0.07
894 372 0.17
895 378 0.17
896 123 0.06
897 132 0.06
898 2 0.00
899 5 0.00
900 177 0.08
901 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
ATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
GCCGGAGAACCTGAGCGGCATTGGGGTTCAGACGATCGGGGGGCCGGAGGGGGTGTGCGCACATG
ATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCATGGC
TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTAGACCGAGGGTTGCGGCAGCAGGATCAA
CAGCACGTAGAGGGGACCCGACCGATCCTCGCTTGCGCATCTCGCCCTTCTAGCCGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATGGAGTT
CATTCCCAATCTAAGATCGGACGACCGAGGGTTACGGCAGCAC
Found at i:20182292 original size:706 final size:709
Alignment explanation
Indices: 20180966--20182440 Score: 2147
Period size: 706 Copynumber: 2.1 Consensus size: 709
20180956 CGACTAAGCG
* * * *
20180966 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAAATC
* * * * * * *
20181031 GGACTGAGGGTTACGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACC
66 AGACTGAGGGATACAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATAATTTTATTCACC
* * * *
20181096 GGGGCACCATCGCCAGAGAACCTGACCGATGACATTGGGTTTCCGGCGAACGGGGGGGCCGAGGG
131 GGGGCACCATCGCCAGAGAACCTGACCGACGACATTGGGGTTCCGACGAACGGGGAGGCCGAGGG
* *
20181161 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
196 GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTC
*
20181226 ATCAAGCCTCGAGAACCCATACCCCCTTAAAAAGCAATTGAGATTTTACAGGTTTGCTGCCAGTA
261 ATCAAGCCTCGAGAACCCACACCCCCTTAAAAAGCAATTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
20181291 GCTATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
326 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAA
* * * * * **
20181356 TTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGC
391 TTTTCAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTAAAAAGTTTGGGC
*
20181421 ACAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
456 ACAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
*
20181486 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATT
521 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
20181551 TACAAGCCATAAAAATCTCACTGGCACATAGAAATATGAGGATGTACCTAAACCCACCTACCACC
586 TACAAGCCATAAAAATCGCACTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACC
* * *
20181616 CTATCAATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACATAGTGCTCGCTCGCCCA
651 CGATCAATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCA
* *
20181675 CCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCCTTCCCAGTCTAACATCAAA-C
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAAATC
* * * *
20181739 AAGA-TCGAGGGATGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGTAATTTTATTCG
66 -AGACT-GAGGGATACAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATAATTTTATTCA
* * * * ** * *
20181803 TCGGGGCACCATCGTCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATC-GGGAGGCC-CG
129 CCGGGGCACCATCGCCAGAGAACCTGACCGACGACATTGGGGTTCCGACGAACGGGGAGGCCGAG
20181866 GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT-GACCCCTATCCC
194 GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCC
* * ** *
20181930 TCATCCAA-CCTTGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCA
259 TCAT-CAAGCCTCGAGAACCCACACCCCCTTAAAAAGCAATTGAGATTTTACAGGTTTGCTGCCA
*
20181994 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
20182059 GAATTTGTCA-CTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTAAAAAGTTT
388 GAATTT-TCAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTAAAAAGTTT
**
20182123 AGGGC-CAAAAATCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCA
452 -GGGCACAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* * *
20182187 TGAAAAGTAGAGAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
516 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
20182252 GAATTTACAGGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAGCCACCTA
581 GAATTTACAAGCCATAAAAATCGCACTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTA
* * * * * *
20182317 CCACCCGATCGATCCACGGCTTGCGCATCCCGTCTCTTTGTCCGACTTAGTGCCCGCCCGCCCG
646 CCACCCGATCAATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCA
* *
20182381 CCCGCCTACCCGCTCGTTTTGTCGGTTGGCTTCGGCATACGGAGTTCATTCCCAGTCTAA
1 CCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
20182441 GATTGGATTG
Statistics
Matches: 681, Mismatches: 76, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
706 413 0.61
707 61 0.09
708 9 0.01
709 150 0.22
710 48 0.07
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (709 bp):
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAAATC
AGACTGAGGGATACAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATAATTTTATTCACC
GGGGCACCATCGCCAGAGAACCTGACCGACGACATTGGGGTTCCGACGAACGGGGAGGCCGAGGG
GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTC
ATCAAGCCTCGAGAACCCACACCCCCTTAAAAAGCAATTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAA
TTTTCAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTAAAAAGTTTGGGC
ACAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATCGCACTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACC
CGATCAATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCA
Found at i:20182604 original size:26 final size:26
Alignment explanation
Indices: 20182574--20182624 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20182564 GTTGACTTAG
20182574 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20182600 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
20182625 TGATTGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20183504 original size:26 final size:26
Alignment explanation
Indices: 20183474--20183526 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20183464 GTTGACTTAG
* * *
20183474 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTCCATTCCCAGTGTAA
20183500 GCATACAGAGTCCATTCCCAGTGTAA
1 GCATACAGAGTCCATTCCCAGTGTAA
20183526 G
1 G
20183527 ATCGGTCCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTGTAA
Found at i:20183901 original size:899 final size:899
Alignment explanation
Indices: 20181812--20184407 Score: 3591
Period size: 899 Copynumber: 2.9 Consensus size: 899
20181802 GTCGGGGCAC
* *
20181812 CATCGTCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGAGGCCCGGGGGGTGTGCG
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC--GAGGGCCGGGGGGTGTGCG
* * *
20181877 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT-GACCCCTATCCCTCATCCAACCT
64 CACATGATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
20181941 TGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
129 TGAGAACTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
20182006 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAATTTGTCA-C
193 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TTAGC
* * * * ** *
20182070 TGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTAAAAAGTTTAGGGCCAAAAAT
257 TGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACT
* * * * * *
20182135 CCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAGTAGAGA
322 CCTTCCGAAAAAATTTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* *
20182200 ACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCC
387 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
20182265 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCGATCGAT
452 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGAT
* * * *
20182330 CCACGGCTTGCGCATCCCGTCTCTTTGTCCGACTTAGTGCCCGCCCGCCCGCCCGCCTACCCGCT
516 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCG----CCCGCT
* * ** *
20182395 CGTTTTGTCGGTTGGCTTCGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGATCGAGGG
577 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACAGGACCGAGGG
* * * * *
20182460 TTGCAGCTGTAGGATCGGTAGCACGCATAGGGGGACCCGATCGTTCCCCGGCTTGCGCATCCCGC
642 TTGCAGCAGTAGGATCGGTAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCAC
*
20182525 CCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
707 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * * ** * *
20182590 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATTGGACCGGACCAAGGGTTGGGGCAGC
772 CCCAGTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCGGACCAAACCAAGGGCTGCGGCAGC
* *
20182655 ACATGCTGGGCTGAGGCATGTGCTGGTGTTGCATTTTTCTTCACCGGGGCACCATCGTCGGAG
837 ACATGCTGGGCTGAGGCATGTGCTGGTGTCGCATTTTTCTTCACCAGGGCACCATCGTCGGAG
* * * * ** *
20182718 CATCATCGAAGAATCGGACCGATGGCATTGGGGTTCCGACGATCGAGGGGCCAGGGGGTGTGCGC
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGA-GGGCCGGGGGGTGTGCGC
** * * * *
20182783 ACATGATGTGGGATGGGTGCTGCTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAATCTC
65 ACATGATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
* * *
20182848 GAGAACTCACAGCCTCGTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
130 GAGAACTCACACCCCCTTAAAGAGCATT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
20182913 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG
194 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* ** *
20182978 AAGTTTCTTGTGCATGAGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
259 AAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCC
** * *
20183043 TTCCGAAAAAA-TTT-AAAAATCCCAAACTGTAAAAAGATTAAAAAATCGTGAAAAATAGAAAAC
324 TTCCGAAAAAATTTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
20183106 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
389 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
20183171 CAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTCAACCAACCTACCACCCTATCGATCC
454 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCC
* * * *
20183236 ACGGCTTGCACATCCCGTCTCTCTGGCCTACGTCA-TGCCCGCCCGCCCGCTCGCCCTCTCATTT
518 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-AGTGCCCGCCCGCCCGCTCGCCCGCTCGTTT
* ** *
20183300 CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTGCA
582 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACAGGACCGAGGGTTGCA
*** * *
20183365 GCAGTAGGATCAACAGCACGCAGAGGGGGACCC-AGCCGATCCCCGGCTTGCACATCCCACCCCT
647 GCAGTAGGATCGGTAGCACGCAAAGGGGGACCCGA-TCGATCCCCGGCTTGCACATCCCACCCCT
* **
20183429 CTGGCCGGCTGAGCACCCGCGTGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
711 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * ** *
20183494 GTTTAAGCATACAGAGTCCATTCCCAGTGTAAGATCGGTCCAAACTGAGGGCTGCGGTAGCACAT
776 GTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCGGACCAAACCAAGGGCTGCGGCAGCACAT
** * *
20183559 GCTGGTTTG-GGCATGTGCTGGTGTCGTA-TTTTCTTCGCCAGGGCACCATCGTCGGAG
841 GCTGGGCTGAGGCATGTGCTGGTGTCGCATTTTTCTTCACCAGGGCACCATCGTCGGAG
* * *
20183616 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGATGATCGAACGGGCCGGGGGGTGTGCG
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-A-GGGCCGGGGGGTGTGCG
*
20183681 CAGATGATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
64 CACATGATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
20183746 TGAGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAA
129 TGAGAACTCACACCCCCTTAAAGAGCAT-TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
20183811 GTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
193 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
20183876 GAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTCGGACCAAAACTC
258 GAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTC
* * *
20183941 CTTTCGAAAAAATTTTAAAAAATCCTGAA-TCATAAAATGTTTCAAAAATCGTGAAAAATAGAAA
323 CTTCCGAAAAAATTTTAAAAAATCCTGAACT-GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
20184005 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
387 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** * * * *
20184070 ATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCAACTACCTTATCGAT
452 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGAT
* *
20184135 CCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCG-CC-CT--CCCGCTCGTT
516 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTT
* * ** *
20184196 TCATCTGTCAGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCA-GACCGAGGGTTG
581 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CAGGACCGAGGGTTG
* * * * ** * * *
20184260 CGGCAGCAGGATCGGTAGCATGCAAAGGGGGACCCGATCAATCGTCGACTTGCTCATCCCACCCT
645 CAGCAGTAGGATCGGTAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCACCCC
* * * * * * * *
20184325 TCTAGTCGGCTGAGTGCCCGCACGTTCATTTCATGGGTTGACGTAGGCATACGGAATTCATTTCC
710 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
20184390 AGTCTAAGCATACGGAGT
775 AGTCTAAGCATACGGAGT
20184408 TCAGTCTAAG
Statistics
Matches: 1483, Mismatches: 191, Indels: 41
0.86 0.11 0.02
Matches are distributed among these distances:
897 179 0.12
898 66 0.04
899 287 0.19
900 245 0.17
901 198 0.13
902 2 0.00
903 2 0.00
904 208 0.14
905 61 0.04
906 235 0.16
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGCCGGGGGGTGTGCGCA
CATGATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
AGAACTCACACCCCCTTAAAGAGCATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
GTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTT
CCGAAAAAATTTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACAGGACCGAGGGTTGCAGCAG
TAGGATCGGTAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCACCCCTCTGGC
CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGGAGTCCATTCCCAGTCTAAGATCGGACCAAACCAAGGGCTGCGGCAGCACATGCTGG
GCTGAGGCATGTGCTGGTGTCGCATTTTTCTTCACCAGGGCACCATCGTCGGAG
Found at i:20184595 original size:26 final size:26
Alignment explanation
Indices: 20184555--20184607 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20184545 GATGACTTAG
20184555 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* * *
20184581 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
20184607 G
1 G
20184608 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:20186929 original size:26 final size:26
Alignment explanation
Indices: 20186893--20186945 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20186883 GTTGACTTAG
* *
20186893 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
20186919 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
20186945 G
1 G
20186946 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:20187821 original size:26 final size:26
Alignment explanation
Indices: 20187792--20187844 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20187782 GTTGACTTAG
* *
20187792 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20187818 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20187844 G
1 G
20187845 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20188774 original size:900 final size:891
Alignment explanation
Indices: 20186874--20189758 Score: 3723
Period size: 900 Copynumber: 3.2 Consensus size: 891
20186864 TCGCACACTT
* * *
20186874 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTACCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
20186939 GTCTAAGATCGAACCGGATCGAGGGTTGCGGTAGCACATGCCGGGCTCGGGCATGTGCTGGTGCC
66 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCG
* * ** *
20187004 ACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCGGTTGCTTTGGG
131 ACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGG
* * * *
20187069 GTTCCGGTGATCGGAGGGGCCGGGAGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGG
196 GTTCCGGTGATCGGGGGGGCCAGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
20187134 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTCAAGAGCATTTA
260 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
20187199 AGATTTTGCA-GTTTGGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
325 AGATTTTACAGGTTT-GCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
20187263 GGTCGCAAAATCTTGTACACTTCGGGATTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATAC
389 GGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* *
20187328 AAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTAAAC
453 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAAC
* * *
20187392 C-GTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
518 CTG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTG
*
20187456 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATG
582 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGCATTGGCATGCAG-AATATG
* * * * *
20187521 AAGATGTGCCAAAAGCAACCTACCACCTTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCC
645 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCC
* * * *
20187586 GGCATAGC-GCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCATAGGCATACGGAGTTCATTC
710 GACGTAGCTG-CCG-CCGCCCGCCCGCTCGTTTCATC-GTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
20187650 CTAGTCTAAGATCAGACCGAACTGAGGGTTACGGTAGCAAGATTGGCAGCATGTAGAGGGGGACC
772 CTAGTCTAAGATGAGACCGAACAGA-GGTTGCGGTAGCAAGA-TAGCAGCACGTAGAGGGGGACC
* * * * **
20187715 CGGTCGATCCCCGGCTTA-CACATCCTACCACTTTCCCCGGCTGAGCGCCCTCACGCTC
835 CGATCGATCCCCGGC-TAGCGCATCC-ACCCCTCTGGCCGGCTGAGCGCCCTCACGCTC
* * *
20187773 GTTCCATTGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * ** * * *
20187838 ATCTAAGATCGGACCGAACCGAATGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCAGGTGCG
66 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCG
* * * * **
20187903 ACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGGGAGCCTGACCAACGGCATTGGG
131 ACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGG
*
20187968 GTTCCGGTGATCGGGGGGGCCAGGGGCTGTGCGCACATGATGTGCG-T-GGTGCTGGTACTTGGC
196 GTTCCGGTGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
20188031 CCTTATATTGGCCCCCTATCCCTCATGAAACCTGGAGAACTCACA-CCCCTTAAAGAGCATTTGA
261 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
20188095 GATTTTACAGGTTTGCTGCCAGTAGCCAA-TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
326 GATTTTACAGGTTTGCTGCCAGTAG-CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
20188159 GTCACAAAATCTTGTACACTTCAAGTTTTAGCTGATTTTTTTTATGCATGCCAACAAAAATACAA
390 GTCACAAAATCTTGTACACTTCGAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
20188224 GGATGATGTCCACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCAAACCT
455 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCT
* * *
20188288 GAAAAAGTTTGAAAAATCATGAAAAATATAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAG
520 GAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAG
*
20188353 GCTTAAGGGACCATTGTATGAATTTACAAGCCAATAAAAATGAATTGGCAT-CAGAATATGAAGA
585 GCTTAAGGGACCATTGTATGAATTTACAAGCC-ATAAAAATGCATTGGCATGCAGAATATGAAGA
* * *
20188417 TGTGCCTAAA-CCACCAACGCACCCTATCCGATGCCACAGCTTTGCACATCCTGTTCTCCTCTGG
649 TGTGCCTAAACCCACCTAC-CACCCTAT-CGAT-CCACGGC-TTGCACATCCCG-TCT-CTCTGG
*
20188481 CCCGACGTAGTGCTGCCTGCCGCCCGCGCCG-TCGTTTCGTCTGTTGGCTTAGGCATACGGAGTT
708 -CCGACGTA--GCTGCC-GCCGCCCGC-CCGCTCGTTTCATC-GTTGGCTTAGGCATACGGAGTT
* * * * * *
20188545 CATTCCTAGTCTAAGATGAAACCGGACCGAGGCTTGCGGCAGCATGATCAGTAGCACGTAGAGGG
767 CATTCCTAGTCTAAGATGAGACCGAACAGAGG-TTGCGGTAGCAAGAT-AGCAGCACGTAGAGGG
* * * * **
20188610 GGACCCGATCGATCCCCGGCTAGTGGATCTCGCCCCTCTGGCCGACTGAGCGCCCGAACGCTC
830 GGACCCGATCGATCCCCGGCTAGCGCATC-CACCCCTCTGGCCGGCTGAGCGCCCTCACGCTC
* *
20188673 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCCAAGCATACGGAGTTCATTCCCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * *
20188738 GTCTAAGATCGGACCGGACCGCGTGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT
66 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCG
* * * * *
20188803 ACATTTTTCTTCACCGGGGTACCATCGTC---G-------AG-GAACCTGATCGGTGGAATTGGG
131 ACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGG
** *
20188857 GTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
196 GTTCCGGTGATCGGGGGGGCCA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
20188922 CCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
260 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
20188987 AGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
325 AGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
20189052 GTCACAAAATATTGCACACTTCGAGTTCTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACA
390 GTCACAAAATCTTGTACACTTCGAGTT-TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
20189117 AGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCTCGAACA
454 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAAC-
* * *
20189182 AT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCATGCCATAAAACTTCATGTGA
518 CTGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGA
* * *
20189246 AGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATGTGA
583 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCATTGGCATGC-AGAATATGA
* * * *
20189311 AGATGTACTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCA
646 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCG
* * * * *
20189376 ACGTAG-TG-C-CCGCCCGCCCGCTCATTTCATCGATTGGCTCAAGCATACGTAGTTCATTCCCA
711 ACGTAGCTGCCGCCGCCCGCCCGCTCGTTTCATCG-TTGGCTTAGGCATACGGAGTTCATTCCTA
* * * * *
20189438 GTCTAAGATCG-GACCAAAACAAAGGTTGCAGTAG-AAGGATTGACAGCCCGTAGAGGGGGACCC
775 GTCTAAGAT-GAGACC-GAACAGAGGTTGCGGTAGCAA-GATAG-CAGCACGTAGAGGGGGACCC
* * * * *
20189501 GATTGATCCTCGGCTTGCGCATCCCCCCTCTCTGGCCGGCTGAGCGCCCTCACACTC
836 GATCGATCCCCGGCTAGCGCATCCACCC-CTCTGGCCGGCTGAGCGCCCTCACGCTC
* * * * * *
20189558 GTTTCGTGGGTTGACATAGGCATACGAAGTTCATTCTCGGTCTAAGCATAGGGAGTTCATTCCCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * ** *
20189623 GTCTAAAATCAGATCGGACCAAGGGTTGCAGG-AGCACATATTGGGTTCGGGCATGTGCTGGTGT
66 GTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-
* * *
20189687 CG-CATTTTTCTTC-CCTGGGGCACCATTG-CTGGAGCATCATCAGAGAACCTGATCGGCGGCAT
129 CGACATTTTTCTTCGCC-GGGGCACCATCGTC-GGAGCATCACCAGAGAACCTGACCGGCGGCAT
20189749 TGGGGTTCCG
192 TGGGGTTCCG
20189759 ACGATCGAGG
Statistics
Matches: 1733, Mismatches: 198, Indels: 113
0.85 0.10 0.06
Matches are distributed among these distances:
884 13 0.01
885 252 0.15
886 9 0.01
887 1 0.00
888 3 0.00
889 37 0.02
890 24 0.01
891 14 0.01
892 93 0.05
893 113 0.07
894 262 0.15
895 264 0.15
896 101 0.06
897 34 0.02
898 32 0.02
899 195 0.11
900 281 0.16
901 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCG
ACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGG
GTTCCGGTGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCTG
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCATTGGCATGCAGAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTA
GCTGCCGCCGCCCGCCCGCTCGTTTCATCGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
GATGAGACCGAACAGAGGTTGCGGTAGCAAGATAGCAGCACGTAGAGGGGGACCCGATCGATCCC
CGGCTAGCGCATCCACCCCTCTGGCCGGCTGAGCGCCCTCACGCTC
Found at i:20189210 original size:26 final size:26
Alignment explanation
Indices: 20189158--20189215 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
20189148 TTCCTTCCGA
* *
20189158 AAAAATTTTAAAAAATCTCGAACAAT
1 AAAAAGTTTAAAAAATCTCGAAAAAT
*
20189184 AAAAAGTTTCAAAAATCAT-GAAAAAT
1 AAAAAGTTTAAAAAATC-TCGAAAAAT
20189210 AGAAAA
1 A-AAAA
20189216 CGAGTCGTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.62, C:0.09, G:0.07, T:0.22
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCTCGAAAAAT
Found at i:20190381 original size:25 final size:25
Alignment explanation
Indices: 20190346--20190403 Score: 100
Period size: 25 Copynumber: 2.3 Consensus size: 25
20190336 GTTGACTTAG
20190346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCAT-CGGAGTTCATTCCCAGTCTAA
20190372 GCATCGGAGTTCATTCCCAGTCTAA
1 GCATCGGAGTTCATTCCCAGTCTAA
20190397 G-ATCGGA
1 GCATCGGA
20190404 TCGGATCGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 6 0.19
25 22 0.69
26 4 0.12
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (25 bp):
GCATCGGAGTTCATTCCCAGTCTAA
Found at i:20191276 original size:26 final size:26
Alignment explanation
Indices: 20191247--20191299 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20191237 CTTGACTTAG
* *
20191247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
20191273 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
20191299 G
1 G
20191300 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:20191400 original size:11 final size:11
Alignment explanation
Indices: 20191380--20191412 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
20191370 GTCGGGGCAC
*
20191380 CATCGCCGGAG
1 CATCGTCGGAG
20191391 CATCGTCGGAG
1 CATCGTCGGAG
20191402 CATCGTCGGAG
1 CATCGTCGGAG
20191413 AACCTGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:20193776 original size:556 final size:554
Alignment explanation
Indices: 20192676--20193788 Score: 1419
Period size: 556 Copynumber: 2.0 Consensus size: 554
20192666 AAACTTCACG
* * * *
20192676 TGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAAATGGTATTGGCATGCAGAAAT
1 TGAAGGCTTAAGGGACCATTGCATGAATGTACAAGCCATAAAAAATGGCACTGGCACGCAGAAAT
20192741 ATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTG
66 ATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTG
* * *
20192806 GCCGACGTAGTGCCCGCCCACCCGCCGCCCTCTCGTGTCATCGGTTGGCTTAAGCATACAGAGTT
131 GCCGACGTAGTGCCCGCCCACCCGCCGCCCGCTCATGTCATCAGTTGGCTTAAGCATACAGAGTT
* *** ** * * *
20192871 CATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAAAGGG
196 CATTCCCAGTCTAAGATCAGACAAAATCGAGGGTTACGGCAGCAGGATCAGCAGCACACAAAGGG
* * * * * *
20192936 GGACCCTACGGTCCCTGGCTTACGCATGCAACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
261 GGACCCGACGATCCCCGGCTTACGCATCCAACCCCTCTGGCCGACTGAGCGCCCGCACGCTCATT
* * * * ** **
20193001 TCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATCGTATGGAGTTCATTCCTAGTC
326 CCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAGAGTTCATTCCTAGTC
* ** * *
20193066 TAAGATCAGACCGGATTGAGGGTTGCAGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACA
391 TAAGATCAGACAGGATCAAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTACCACA
** * *
20193131 TTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGATCGGCAGCATTGGGGTT
456 TTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTT
*
20193196 TTGACGATAGGGGGGCCGGGGGGGTTGTGCGCACA
521 CTGACGATAGGGGGGCCGGGGGGG-TGTGCGCACA
* *
20193231 TGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCAT-AAAAATGGCACTGGCACGTAGAAAT
1 TGAAGGCTTAAGGGACCATTGCATGAATGTACAAGCCATAAAAAATGGCACTGGCACGCAGAAAT
* * *
20193295 ATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCGACGGCTTGCGCATCCCGTCTCTCTG
66 ATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTG
* * * * * * * * *
20193359 GCC-AGCGTAGTGGCCGCCCGCCTGCCCGCCCGCTTATTTCGTTAGTTGGCTTAGGCATACGGAG
131 GCCGA-CGTAGTGCCCGCCCACCCG-CCGCCCGCTCATGTCATCAGTTGGCTTAAGCATACAGAG
* *
20193423 TTCATTCCCAGTCTAAGATCAGATCAAAAT-GAGGGTTACGGTAGCAGGATCAGCAGCACACAGA
194 TTCATTCCCAGTCTAAGATCAGA-CAAAATCGAGGGTTACGGCAGCAGGATCAGCAGCACACAAA
** *
20193487 GGGGGAACCCGACTGATCCCCGGCTTGTGCATCCAGCCCCTCTGGCCGACTGAGCGCCCGCACGC
258 GGGGG-ACCCGAC-GATCCCCGGCTTACGCATCCAACCCCTCTGGCCGACTGAGCGCCCGCACGC
20193552 TCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAGAGTTCATT-C
321 TCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAGAGTTCATTCC
** * * * * *
20193616 TCAGTCTAAGATTGGATAGGATCAAGGGTTGCGGTAGCACTTGCTGGGCTCGGGCATGTGCTGGT
386 T-AGTCTAAGATCAGACAGGATCAAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGT
** * * * * *
20193681 ACCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGTATCACCGGAGAACTTGACCGACGGTATT
450 ACCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACAGCATT
* * * *
20193746 GGGGTTCTGGCGATCTGGGGGGTC-GGGGGGTGTGCGCTCA
515 GGGGTTCTGACGAT-AGGGGGGCCGGGGGGGTGTGCGCACA
20193786 TGA
1 TGA
20193789 TGTGCGATGG
Statistics
Matches: 474, Mismatches: 77, Indels: 14
0.84 0.14 0.02
Matches are distributed among these distances:
552 1 0.00
553 60 0.13
554 125 0.26
555 60 0.13
556 221 0.47
557 7 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (554 bp):
TGAAGGCTTAAGGGACCATTGCATGAATGTACAAGCCATAAAAAATGGCACTGGCACGCAGAAAT
ATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTG
GCCGACGTAGTGCCCGCCCACCCGCCGCCCGCTCATGTCATCAGTTGGCTTAAGCATACAGAGTT
CATTCCCAGTCTAAGATCAGACAAAATCGAGGGTTACGGCAGCAGGATCAGCAGCACACAAAGGG
GGACCCGACGATCCCCGGCTTACGCATCCAACCCCTCTGGCCGACTGAGCGCCCGCACGCTCATT
CCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAGAGTTCATTCCTAGTC
TAAGATCAGACAGGATCAAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTACCACA
TTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTT
CTGACGATAGGGGGGCCGGGGGGGTGTGCGCACA
Found at i:20195398 original size:26 final size:26
Alignment explanation
Indices: 20195369--20195420 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20195359 GTTGACTTAG
*
20195369 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20195395 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20195421 AATCAGACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20196301 original size:26 final size:26
Alignment explanation
Indices: 20196272--20196322 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
20196262 GTTGACTTAG
* *
20196272 GCATACAAAGTTTATTCCCCGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
20196298 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAAAGTTCATTCCCAGTCTA
20196323 GGATTGGATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:20197879 original size:903 final size:903
Alignment explanation
Indices: 20193231--20217165 Score: 15838
Period size: 903 Copynumber: 26.1 Consensus size: 903
20193221 TGTGCGCACA
* * *
20193231 TGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCACTGGCACGTAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
*
20193296 TGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCGACGGCTTGCGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * ** *
20193360 CCAGCGTAGTGGCCGCCCGCCTGCCCGCCCGCTTATTTCGTTAGTTGGCTTAGGCATACGGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* * ** * *
20193425 CATTCCCAGTCTAAGATCAGATCAAAATGAGGGTTACGGTAGCAGGATC-AGCAGCACACAGAGG
196 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGA-CAGCACGCAGAGG
* * * *
20193489 GGGAACCC-GACTGATCCCCGGCTTGTGCATCCAGCCCCTCTGGCCGACTGAGCGCCCGCACGCT
260 GGG-ACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * * *
20193553 CATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAGAGTTCATTCTC
323 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* ** * * * * *
20193618 AGTCTAAGATTGGATAGGATCAAGGGTTGCGGTAGCACTTGCTGGGCTCGGGCATGTGCTGGTAC
388 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * *
20193683 CACATTTTTCTTTGTCGGGGCACCATCGCCGGAGTATCACCGGAGAACTTGACCGACGGTATTGG
453 CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGG
* * * *
20193748 GGTTCTGGCGATCTGGGGGGTCGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTTGTACTTGG
518 GGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
20193813 CCCTTATATTGGCCCACTATCCCGCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTG
582 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
20193878 AGATTTTAGAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTGAAATG
647 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
20193943 GTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTCGTGCATGCCAAAAAAAATACA
712 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
20194008 AGGATCATGTCTACCAAGTTTGGGCCCAAAACT-CCTTCTAAAAAAATTTTAAAAAATCCCGAAC
777 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGAAC
* * * * *
20194072 CGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGCCTTGCCAAGAAACTTAACG
842 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * *
20194134 TGAATGCTTAA-GGACAATTGTACGAATTTAGAAGCCATAAAAATGGCATTGGCACATAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
*
20194198 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
20194263 CCGGGGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTTGTCTGTTAGCTTAGGCATACGGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* ** * * ** *
20194328 CATTCCAAGTCTAAGATGGGACCGGATCGAGGGTTGGGGCACCAGGATC-AGCAGCACGCAGAGG
196 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGA-CAGCACGCAGAGG
* * * * * * **
20194392 GGGATCCGGTCAATCCCCAGCTTGCGCATCCCGCCCCTCGGGCCGACTGAGCGCCCACACTTTCG
260 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *
20194457 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
325 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * * * *
20194522 TCCAGGCTTGGACTGGACCTAGGGTTGTGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGTCG
390 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
** * **
20194587 CATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTTGGAGAACCTGACCGACGGCATTGGGG
455 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
*
20194652 TTCCGGGGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
520 TTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
20194717 CTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACACACGCCCCCTTAAAGAGCATTTGAG
584 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
20194782 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGT
649 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
20194847 CACAAAATCTTGTACACTACGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
714 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * *
20194912 GATCACGTCTACCAAGTTTGGGGCCAAAA-AACCTTCCAAAAACATTTTAAAAAATCCTGAACTG
779 GATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGAACCG
* * *
20194976 CAAAATGTTTCAAAAATCCTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
844 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
20195036 TGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATT-GC-CATGCAGAAA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT--AGAAA
* * * *
20195099 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACCTGTGCATCCCGTCTCTCT
64 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
20195164 GGCCGGCGTAGT----G-----CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTGGGCATACGAAG
129 GGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAG
* * *** * ** *
20195220 TTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTAGCAGTAGGATCGGGAGCACACAGAG
194 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAG
* * * ** *
20195285 GGGGACCCGG-CTGATCCCCGGCTTGTGCATCCCTCCCCTCTGGCCGGTTGAAAGCTCGCACGCT
259 GGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
20195349 CGTTTTGTTGGTTGACTTAGGCATACGGAGTTTATTCCCAATCTAAGCATACGGAGTTCATTCCC
323 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * * ** * *
20195414 AGTCTAAAATCAGACTGGACCGAGAGTTACGGCAGTGCATGTTGGGCTCGCGCATGTGCTGGTGC
388 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* *
20195479 CGTATTTTTCTTCGTCGGGGCATCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGG
453 CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGG
* *
20195544 GGTT-CAGCGGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTG
518 GGTTCCGGC-GATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
20195608 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTT
581 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
20195673 GAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTTAAATGGGGACACTCTTTTT-AAA
646 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAA
* * *
20195737 TGGTCACAAAATCTTGTCCACTTCAAGTTTTTAGCTGAATTTTTGTGTGCATGCCAACAAAAATA
710 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
20195802 CATGGATCAAGTCTACCAAGTTTTGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAAT-CTCG
775 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCT-G
* * *
20195865 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCTTGAAACTTCACG
839 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
20195930 TGAAGGCTTAAGGGACCATTGTATAAATTTACAAACCATAAAAATGGCATTGGCACATAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* * * * *
20195995 TAAAGGTGTGCCTAAACGCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * ** * *
20196060 CTGGCATAGTGCCCGCCCACCCATCCGTCCGCTCGTTTCATC-GATTGGCTTAGGCATACGGAGT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAG-TTGGCTTAGGCATACGGAGT
* * * * * * * **
20196124 TCATTCCCAGTCTAGGATCAGATCAAATCGAGGGCTACGACAGTAGGATCGACAGCACATAGAGG
195 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGG
** * * ** *
20196189 GGGACCCAATCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCGAATGAGCGCCCGTACGCTCG
260 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
** * *
20196254 TTTCGTGGGTTGACTTAGGCATACAAAGTTTATTCCCCGTCTAAGCATACGGAGTTCATTCCCAG
325 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** * * *
20196319 TCTAGGATTGGATTGGACCGGGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGTCG
390 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * *
20196384 CATTTTTTTTCGTCGGGGCACCATCGCCCGATCATCGTCAGAGAACCTGATCGGCGGCATTGGGG
455 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* *
20196449 TTCCGGGGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTTCTTGGC
520 TTCCGGCGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
20196514 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTCGA
583 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
20196579 GATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGG
648 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * *
20196644 TCACAAAATCTTGTACACTTTGAGTTTTTACCTGAATTTTCTTGTGCGTGCCAACAAAAGTACAA
713 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
20196709 GGATCATGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCAAAAAAATTTTAAAAAATCTTGGACC
778 GGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGAACC
* *
20196773 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAAATTCACG
843 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * **
20196834 TGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATGGGCACGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* *
20196899 TGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
20196964 CCGGCGTAGTGCCCGCCCGCCTGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* * * * * *
20197029 CATTCCCAGTCTAAGATCGGACCAGACCAATGGTTGCAGCAGTAGGATCGACAGCACGCAGAGGG
196 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGG
*** * * * *
20197094 GGATGTGGTCGATCCTCGGCTTGCGTATCCCGCCCCTCTGTCCGGCTGAGCGCCCGTACGCTCGT
261 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
**
20197159 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAACTAAGCATACGGAGTTCATTCCCAGT
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * *
20197224 CTATGATCAGACCAGACCGAGGGTTGCAGCAGGACATGCTGGGCTCGGGCATGAGCTGGTGCCGC
391 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * **
20197289 ATTTTTCTTCATCGGGGCCCCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGT
456 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
* * *
20197354 T-TGGCTGATCGTGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCC
521 TCCGGC-GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * * * * *
20197418 TTATACTAGCCCCCTATCCGTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTCGAGA
585 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
20197483 TTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGTG
650 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT-
* *
20197548 GC-CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAT-TCAACAAAAATTCA
714 -CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAACAAAAATACA
* ** * *
20197611 GGGATCACGTCTACCAAGTTTGGGGCCAAAA-TACCTTCTGAAAAATTTTTAAAAAATCCTAAAC
777 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGAAC
* *
20197675 CGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
842 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
20197737 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* * * * *
20197802 TGAAGATGTGCCCAAACACACCTACCACCATATCGATCCACGACTTGTGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
20197867 CCGGCATAGTGCCTG----CCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCGTACGGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* ** *
20197928 CATTCCTAGTCTAAGATCAGA-TTGAACTGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGG
196 CATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGG
* * * * * * *
20197992 GGGACCCGATCGATCCCCTGCTTGTGCATCCCACCCCTCTGGCCGACTGAGCGCCTGCATGCTCG
260 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
20198057 TGTCGTGGGTTGAC-T-----TA--G-G--------CA---T--GC--A--GAGTTCTTTCCCAG
325 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
20198096 TTTAAGATTGGACCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATTTGCTGGTGCTA
390 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-C
* * * * *
20198161 G-ATTTTT-TT--TC---GC-CGA--G--GCACCATCGCCGGAGAACCT-ACCGGGCGGCATTAG
454 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGG
* * *
20198213 GGTTACGGTGAT-GGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTG
518 GGTTCCGGCGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
20198277 GCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTT
581 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
20198342 GAGATTTTATAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAAT
646 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * * * *
20198407 GGTTACAAAATCTTGTACACTTCAAATTTGTAGCTGAATTTTTTTTTTACATACCAACAAAAATA
711 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATA
*
20198472 CAAGGATCACGTCTAACAAGTTTGGGGCC-AAA--A-C-TCC-----------------T--T--
775 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGA
*
20198511 --C-C---AA-----AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
840 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * *
20198564 TGAAGGCTTAAGGGAACATTGTATGGATTCACAAGTCATAAAAATGGCATTGGCATGCA-A-AAA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAA
* * * *
20198627 TGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCCCATCTCTCT
64 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
20198692 GGCTGACGTAGTGCCCGCCCGCCCGCTCGCCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
129 GGCCGGCGTAGTGCCCG-CC-CAC-C-CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
* * * * * ** * * *
20198757 AGAGTTCATTCCTAGTCTAACATCGGA-CAGGATCGAGGGTTGTGGTAGCAGGATCGGCAACACG
190 GGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTACGGCAGCAGGATCGACAGCACG
* ** * * * *
20198821 TAGAGGGGGACCCACTCGATCCCCGGCTTGCACATCTCGCCCCTCTGGTCGGCTGAGCACCCGCA
254 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * ** *
20198886 CGCTCATTTTGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACGGAATTCAT
319 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * * *
20198951 TCCCAGTCTAAGATCAGACCGGACCAAAGGTTGTGGCAACACATGCTGGACTCAGACATGTGCTG
384 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
** ** * * *
20199016 GTGTAGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCACTGGAGAACCTGACCGACGGCA
449 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCA
* * * * *
20199081 TTGGGGTTCCGACGGTCAGGGGGGTCGGGGGGGTGTACGCATATGATGTGCGATGGGTGCTGGTA
514 TTGGGGTTCCGGCGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
20199146 TTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGA
577 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
20199211 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
642 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
20199276 AAATGGTCACAAAATCTTGTACACATT-GAGTATTTAGCTGAATTGTTTTGTGCATGCCAACAAA
707 AAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * *
20199340 AATACAGGGATCACGTGTACCAATTTTGGGG-AAAAACT-CCTTCCGAAAAAATTTTAAAAAAT-
771 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATC
* * ** * *
20199402 CTCGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTT
836 CT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
20199467 CATG
900 CACG
* * ***
20199471 TGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* * *
20199536 TGAATATGTGCCTAAACCCACCTTCCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
20199601 CTGACGTAGTGCCCTCTCACCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTATGCATACGGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* * * * * ** *
20199666 CATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATGCCAGCAGGATCGGCAGCACATAGTGGG
196 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGG
* * * * **
20199731 GGACCCGGTCGAT-CCCGGACTTGCACATCCTGTCCCTCTGGACGGCTGAGCGCCTACACGCTCG
261 GGACCCGGTCGATCCCCGG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * *
20199795 TTTTGTGGGTTGACTTAGGCATACGGAGTTCAGTCGCAGTCTAAGCATATGGAGTTCATTCCCAG
325 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * * * *
20199860 TCGAAGATCGGATCGGATCGAGGGTTACGGTAGCACATGTTAGGCTGGGGCATGTGCTGGTGCCA
390 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * **
20199925 TATTTTTCTTCG-CTGGGGCGCCATCGTCGGAGCATCGCAGAAGAACCTGACCGGTGGCATTGGG
455 CATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
* * *
20199989 GTTCCGGCGATCGAGGGGGCCGGGGGGGTGTGCTCACTTGATGTACGATGGGTGCTGGTACTTGG
519 GTTCCGGCGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
20200054 CCCTTATTTTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTG
582 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
20200118 AGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
647 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
20200183 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAA
712 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * **
20200248 ATGATCACGTCTACCAAGTTTGGGGCTAAAACTA-CTTCTGAAAAAATTTTAAAAAATCCCT-AA
777 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAAT-CCTGAA
* *
20200311 CCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
841 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
20200374 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGGCATTGGCATGCA-A-AAA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAA
* *
20200437 TATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCAACCCGTCTCTCT
64 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * * * * **
20200502 GGCCGATGTAGCGCCCGTCCACCCGACCGCCTGCTCATTTCGTTGGTTGGCTTAGGCATA-GGAA
129 GGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGG-A
* * * * *
20200566 GTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACTGCAGCAGGATCGGCAGCACGCAGA
193 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGA
* * * * * * * *
20200631 GGGGGACCCGGTCGATCCCCTGCTTGTGCATTCCGCCCCTCTGGTCGGCTAAGCACCTGCCCGCT
258 GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
20200696 CGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTGCCAGTCTAAGCATACAGAGTTCATTCCC
323 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * ***
20200761 AGTCTAAGATCGGACCGGACCGAGGGTT-CGACAGCACATGCTAGGCTTTCGCATGTGCTGGTGC
388 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * ** * *
20200825 CACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCAAGAGAACTTGACC-AGCGACATTG
453 CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTG
**
20200889 GGGTTCCAACGATCGGAGGGGCCGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
517 GGGTTCCGGCGATCGG-GGGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
** **** * * * * ** ** * **
20200954 TGGCCCACATA-TGGAATTC-ATTCC-CAGTCTAAGCATATG-GAGTTCATTCTCAGTCT--A-A
579 TGGCCCTTATATTGGCCCCCTATCCCTCA-TC-AAACCT-CGAGAACTCACACCCCCT-TAAAGA
* *** * * * * * * **
20201012 G-A-TCG-GATCGGACCGAGGGTTAC-G---GTAGCACA-TGATGGGCTCAGGCATGTGCTAGTG
640 GCATTTGAGATTTTA-C-AGGTTTGCTGCCAGTAGC-CATTAAAGTG-TCTGAAATG-G---G-G
* * * * * * * * ** ** * *
20201069 CCTTATTTTTCTTCGTAGA-GG-CAC--CATCCCTGGAGGATTGTCGGAGAACCTGATCGGCGGT
696 AC--ACTTTT-TTC--AAATGGTCACAAAAT-CTTGTA-CACT-TC-GAG----TTTTTAGCTGA
* * * * ******** * ** * * * **
20201130 ATTGGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACTTGATGTACGGTGGGT-GCTGG
748 ATT---TTTTTG-TG--CA----TGCC-AACAAAAAT--ACA-AGGAT-CAC-GT--CTACCAAG
* * * * * ** **** ** * ** ** * * ****
20201194 TACTT-GGCCCTTATATTGGCC--CCCTATCCCTCATCAAACCTCGAGAA-CTCACACCCCTT-A
795 T--TTGGGGCC-AAAACT-ACCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCA
* * *** * *** * * * ** *
20201254 AAGAGCATTTGAGATTTTATA-G-GT-TTGC-TGCCA-G-TA-GGCA-T
856 AAAATCATGAAAAATAGAAAACGAGTCGT-CTTGCCATGAAACTTCACG
* * * * * * *
20201295 TAAAGTGTTTGAAATGGGGA-CATT-T-T---TTTCAAATAGTCA-CAAAAT--C-TTGTACACT
1 TGAAG-GCTT--AA--GGGACCATTGTATGAATTT-ACA-AGCCATAAAAATGGCATTG-GCACA
* ** * * * * ** ** ** *** * *
20201350 TCGAGTTTTTAACTGGATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCAT-G-TCTACCAAG
58 TAGAAATATGAA---GA------TGTGCCT--AAACCCACCTACCACCCT-ATCGATCCA-C-GG
* * *** * ********* * *** ** ***
20201413 TTTGGAGCTAAAAC-TCTTTTCAAAAAAATTTTAAAAAAT-CCCGAACCGCAAAAAGTTTC-AAA
109 CTT-GCGC-ATCCCGTC-TCTC-TGGCCGGCGT----AGTGCCCG--CC-C-ACCCG-CCCGCCC
** * * * * * * * * * ***
20201475 AATCGTGAAAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCAT
161 GCTCGT-----TTCG---TC-AGTTGGCTT---A-G--GCAT-ACG--GA-G-TTCA-TTCCCA-
* ** * *** * * * *
20201540 TGTATGAATTTACA-AGCCATAAAAATGGCATT--GGCACCCAGAAATATGA-AG-ACGTGCCTA
204 -GTCT-AAGAT-CAGA-CCAGACCGA-GG-GTTACGGCA-GCAG-GAT-CGACAGCAC--G-C--
* ***** ** * * * * *
20201600 AACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGCCT
255 -A--GA-GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC----TG--A
* * * * * * *
20201665 GCCTGCCCGCCCGCTCGTTTCATCGGTTGGCCTAGGCATATGGAGTTCATTTCCAGTCTAAG-AT
310 G-C-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* ** ** * *
20201729 CGGACCAGACTGAGGGTT-GTGGTAGCAGGATCGGT-AGCA-CGCAGAGGGGTACCCGACTGATC
373 ---A-C-G---GA--GTTCAT--TCCCA-G-TC--TAAG-ATCG--GACCGG-A-CCGA-GGGT-
** * * * * ** * * * * *
20201791 CCCGGCTTGCGCATCCCGCCCCTCTGGCCA-GCTAAGC-GCCTGCACGC-TCGTTTCGTTGGTTG
415 TGCGGC-AGCACATGCTG-GGCTC-GGGCATG-T--GCTG-GTGC-CGCAT-TTTTC-TTCGTCG
**** * * * * * * * * ** *
20201853 ACTTAGGCAT--ACAGAGTTCAT-TCC-TAG--TCTAAGCAC-ACGGCGTT--CATTCCCAGTCT
470 GGGCA-CCATCGCCGGAG--CATCGCCGGAGAACCTGA-C-CGACGGCATTGGGGTT-CC-GGC-
**** * *** * * **
20201909 AAGATCAGACCAGACTAAGGGT-TACAGCAGCACATGCTGGGCTCGGGCATGAACTGCTGCTGTA
527 --GATC-GGGGGGCCGGGGGGTGT---GC-GCACATGAT--G-T-GCG-ATG-GGTGCTG--GTA
*** * ** * * ** * * * * * **
20201973 -TT-TTTCTTCGT-CGGGGCACC-ATCGCCAGAGC-ATCGCTGGAGAACCTGACTAGCGAC--AA
577 CTTGGCCCTT-ATATTGGCCCCCTATC-CCTCATCAAAC-CTCGAGAA-CTCAC-ACCCCCTTAA
* ** * ** ** * *** * * * **
20202031 TG-GGGTTCG-GATGAT-CAGG-GGGCCAGGGGGGT-GTCCA-CACA-TGATGTGCGATGGTTGC
637 AGAGCATTTGAGATTTTACAGGTTTG-C-TGCCAGTAG-CCATTAAAGTG-TCTGAAATGG--G-
** ** ** * ** * * ***
20202089 TGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCTTTA
695 -GACACTT------T-T-TT-----CAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAGTTT-
** ** ** ** *
20202153 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTGAATGGGGA-CACTT
740 -TTAGC---TGA-ATTTT-----TTTG-TG-CA-T-GCCAACAAA-AATACAA---GGATCACGT
* ** * * * **** ** **** * * ***
20202217 TTTTCAA--CT-GGTCACAAAA-T-CTTGTACACTTTGAGTTTTTGGCTGAAT-TTTATTGTGCA
787 CTACCAAGTTTGGGGC-CAAAACTACCT-T-C-CAAAAAAATTTT-AAAAAATCCTGA-ACCGCA
** * * * * *** * * * *** * *
20202276 TGCCAA----CAAAAATACAAGGATAACATCTACCTAGT-TTGGGGCCA--AAACTCCATCCAA
846 --AAAAGTTTCAAAAAT-CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA--C-G
** *** *** * ** * ** *
20202333 AAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCG
1 TGAAGGCTTAAGGGA-CC---ATTGTATGAA--TTT-ACAA----G--CCATA-AAAATG-G-CA
* * * * *** ** * *
20202398 TCTTGC-CAT-GAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCC-AT--A
50 T-TGGCACATAGAAA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCACCCTATCGA
*** * *** *** * ** * ** *
20202458 AAAATGGCGTTG-GCATGTAG-AAATATGAAGATGTGCCTA-AACCCACCTACCACCCTATCGAT
102 TCCACGGC-TTGCGCATCCCGTCTCTCTG--GCCG-GCGTAGTGCCC-GC--CCA-CC---CG--
* * * ** * * *
20202520 CCACGGCTTGCGCATCCCGTATC-TCTGGCCGGCATAGTGCCCGCCTGCCTGCCCGATCGTTTCG
154 CC-C-GC--CCGC-T--CGTTTCGTC-AGTTGGCTTA--G---GCAT-AC-G---GA--G--T--
** * * * * ** *
20202584 TCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCG-AACCAAGGGTTATGG
195 TC-ATT--CCCAGTC-TA---AG---A-T--CAGAC-CAGA-CCGAGGGTTA-C---------GG
* ** * * *
20202648 CAGCAGGATCGACAGCACGCAGAGGAGGACCCGACCGATCCCCGGTTTGCGCATCCCACCTCTCT
235 CAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
*
20202713 GGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG----TT--CA-T
300 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
20202771 -T---C---C------CA-----A-TCTAAGATCGGACCGGACCGAAGGTTACGGCAGCACATGC
365 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * * * *
20202817 TGGGCTCGGGCAAGTGCCGGTGCCACATTTTTCTTCATTGGGGCACCATCGTCGGAGCATCGTCG
430 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
* * *
20202882 AAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGTGTGCGCACATAA
495 GAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG-CC-GGGGGGTGTGCGCACATGA
* * * *
20202947 TATGTGATGTGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
558 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
20203012 TCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTG
623 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
20203077 AAATTGGAACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
688 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * **
20203142 TTTGTGCACGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTTGGGCCAAAACT-TCATCTG
753 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCA
* * *
20203206 AAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAACCATGAAAAATAGAAAATGAGT
818 AAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
20203270 CGTCTTGCCATGAAACTTCACG
882 CGTCTTGCCATGAAACTTCACG
* * * *
20203292 TGAAGGCTTAAGGGACCATTCTATGAATTTACAAGGCATAAAAATGGCACTGGCACGTAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* * ** * *
20203357 TGAAGATGTGTCTAAAGCTGCCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
20203422 CCTGCGTTGTGCCCG----CCCGCCCGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
** * * * * * *
20203483 CATTCTTAGTCTAAGATCTGACCAGACCGAGTGTTGCGGTAGTAGGATCGACAGCACGCGGAGGG
196 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGG
** * * * **
20203548 GGACCCGACCGATCCCCGGCTTGCGCATCTCGCACCTCTGGCCGGCTGAACGCCTACACGCTCGT
261 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
20203613 TTCATGGGTTGACTTAGGCATAC-G-G---------AG--T-----T-C--A-TT-A---CCAGT
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
20203652 CTAAGATCGGACTGGACCGAGGGTTACGGTAGCACAT-CTTGGGCTCTGGCATGTGCTGGTGCTG
391 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC-TGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * *
20203716 CATTTTTCTTCGCCAGGGCACCATCACTGGAGCGTCGTC-GAGAACCTGACCGGCGGCATTGGGG
455 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * *
20203780 TTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGATGGTACTTGGCCC
520 TTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
20203845 TTATATTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCTTTAAA
585 ------T------TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
20203910 CAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
638 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
20203975 TTTCAAATGGTAACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTTTTTGTGCATGACAAA
703 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * *
20204040 AAAAATACAAGGATCATGCCTACCAAGTTTGGGGCCAAAAAT-CCTTTC-GAAAAATTTTAAAAA
768 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAA
*
20204103 ATCCTGAACGGC-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
833 ATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
20204167 TTCAGG
898 TTCACG
***
20204173 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* * * ** ** *
20204238 TAAAGATGTGCCTAAACCCACCTACCCCCCCATCGATCTGCGGCTTGCTTATCCCGTATCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * * * * * * *
20204303 TCGACGTAGTACCCGGCCGCCCACCCGCCCTCTCGATTCATCGGTTGGTTTAGGCATACGAAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* * * * * ** * *
20204368 CATTCTCAGTCTAAGATCAGATCAGATCGAGGGTTGCGACAGCACAATCTG--GGCTCGGGCATG
196 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATC-GACAGCAC--GCA-G
* ** ** * *** ** * * * *
20204431 TGCTGGTGCCGTATTTTTCTTCACCGG---G-GCA--CC-ATCGTC-GG-AGAACCTGATCGCCC
257 AGGGGGACCCG-GTCGATC--C-CCGGCTTGCGCATCCCGCCCCTCTGGCCG--GCTGAGCGCCC
* * * * * *
20204487 GTACGTTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTCAGCATACGGAGTT
316 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
20204552 CATTCCTAGTGTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATTTG
381 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * * *
20204617 CTGGTGCCGCAATTTTCTTTGCCGGGGCACCATCGCCGAAGCATCGCCGGAGAACCTGACCGGCA
446 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACG
** * * *
20204682 GCATTGGGGTTCCAACGATCGGGGGGGCGGGGGGTGTGCGGACATGATGTGTGATGGGTGCTGGT
511 GCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
20204747 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAG
576 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * * * *
20204812 AATTTGAGATTTTACAGGCTTGCTCCCAGTAGCAATTAAAATGTCTAAAATGGGGACACTTTTTT
641 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
20204877 CAAATGGTCATAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
706 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * *
20204942 AATAAAAGGATCACATTTACCACGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTAAAAAAATC
771 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATC
* * * * *
20205006 CTGAACCGTAAAAAGATTT-AAAATTCGTGAAAAATAAAAAACGAGTCCTCTTGCCATGAAACTT
836 CTGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
20205070 CACG
900 CACG
* ** * ***
20205074 TGAAAGCTCGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
*
20205139 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * **
20205204 TCGACGTAGT----G----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGGATACATAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* * * * * * * **
20205261 CATTCCTAGTCTAAGATTAGACC-GAACTGAGAGTTGCAGCAGCAAGATCGGTAGCACGCAGAAG
196 CATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAG-AG
** * * * * * *
20205325 GGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCTTCTGGCTGGTTGAGCCCCCGCACGCTC
259 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
20205390 GTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A
324 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
20205437 -TC----A---GACCGGACTGAGGGTTGTGACAGCACATGCTGGGCTCGGGCTTGTGCTGGTGCC
389 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * *
20205494 ACATTTTTCTTTGTTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGG
454 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
* * * * * **
20205559 GTTCAGGCGATCGGGGGGGCCGTGGGGTGTGCGCACAAGGTGTCCGATGGGTGCTGGTACTCAGC
519 GTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
20205624 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
583 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
20205689 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACCCTTTTTTCAAATGG
648 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
20205754 TCACAAAATCTTGTACATTTCGATTTTTTAGCTGAATATTTTTGTACATGCCAACAAAAATACAA
713 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* ** **
20205819 GGATCACGTCTACCATGTTTGGGGCCAAAACT-CCTTCTGAAAAAATTTTAAAAAATCCAAAACC
778 GGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGAACC
* ** * * *
20205883 GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGACATGAAACTTCACG
843 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
20205944 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
*
20206009 TGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
20206074 CCGGCGTAGTGCCCGCCCGCCCACCCACCAGTCCACCCGTTCGTTTCGTCGGTTGGCTTAGGCAT
131 CCGGCGTAGT----GCCCGCCCA--C-CC-GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
** ** * * * * * *
20206139 ACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAATGGTTGCAGCAGCAGGATTGACAGCGC
188 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCAC
* * * ** * ** * * * *
20206204 GCAGAGGGAGACTCGGCCGATCCTTGGCTTGTGCATCGTGCCCCTCCGACTGGCTGAGCGCCCAC
253 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
** * * * *
20206269 ACATTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTGA
318 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * *
20206334 TTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGAGGCAGTAGGATCGACAGGACGCAGAT-GAG
383 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA-CAT-G-CTGG--GC---TCG-G
* * * * *** * * * * * * *
20206398 GACCTGATCGATCCCCAGCTGGCGCATCCCTC-ACCTTGGGCCGACTGAGCGCC-CA-CAT-GCT
439 G--C--AT-G-T--GCTGGTGCCGCATTTTTCTTCGTCGGGGC-AC-CATCGCCGGAGCATCGC-
* *** ** * * * * ** **** * * *
20206459 CGTTTCGTG-GGTTGACTTA-GGCATACGGAGTTCATTC-CCAATCTAAGCATAC-GGAGTTCAT
493 CG----GAGAACCTGACCGACGGCAT-TGGGGTTC---CGGCGATC-GGGGGGCCGGGGGGT--G
* * * ** * * ** *
20206520 TCCCTGTCTAGGATCAGACCAGACCGA-GGGTTACGAC-AGCACATGCTGGGCCCGGGCATGTGC
547 T-GC-G-C-A-CAT--GA--TGTGCGATGGG-T--G-CTGGTAC-T--T-GGCCC--TTATAT--
*** * * * * * ** *** * ** *
20206583 TGGTGTCGTATTTTTCTTCATCAGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTGG
591 TGGCCCCCTA---TCCCTCATCA----A--A-C-CTCGAG-AAC-TCACACCCCCTTA-AAG-AG
* * * ** * *** * * * * *
20206648 CATTAG-GGTTCTGGGGATCTAGG-GGGCCGGGGGGTGTGCGCACATAATGTG-CAATGGGTACT
641 CATTTGAGATT-T---TA-C-AGGTTTG-CTGCCAGT-AGC-CA-TTAAAGTGTC--T--GAAAT
* ** ** * ** *
20206710 GGTACTTGGTC-CTTATATTTACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAA
692 GG-----GGACACTT-T-TTT----CAAAT-GGTCA-CAAA-ATCTTG---T-ACA---CTT--C
** * ** * * *
20206774 GAGCGTTT-G-AG-ATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGAAACA
734 GAGTTTTTAGCTGAATTTT-----TTTG-TG-CA-T-GCCAACAAAAAT-AC---AA-GG-ATCA
* * ** * * * **
20206835 CTTTTTTCAA--CT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGAAATTTTTTTGTGCA
784 CGTCTACCAAGTTTGGGGC-CAAAA-C---TAC-CTTCCA------A---AAA---AATT-T---
** * ** ** * *
20206897 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCTCAAAACCCCCTCCGAAAAAATTT
827 T-----AAAAAAT-C-CTGAAC-CG-C-AAAAAG-TT----TCAAAA-ATCAT--G-AAAAA-TA
* * * * *
20206962 TAAAA--AATC--C-TGAACCATAAAAAGTTTCGAAAATCA
872 GAAAACGAGTCGTCTTG--CCAT-GAAA-CTTC----A-CG
*** * ** * ** ** * * *
20206998 TGAAAAATAGAAAACGAGTCATCTTGCCGTGAAACTACACGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAGGCT--TAAGGGA-CCA--TTG-TATG-AA-TTTAC---AAGCCATAA---A--AATG---
* * * * ** ** * * **
20207063 GAACTT-ACAAGCCATAAAAATGGCATTGGCGCACAGAAATATGAAGATGTACCTAAACCCACCT
47 GCA-TTGGC-A--CATAGAAAT---A-T---G-A-AG--ATGTG--CCTAAACC-CACCTA-CC-
* * * * *
20207127 ACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCATGGTGCCCGCTCGCCCG
92 A-C-CC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG
* * *
20207192 CCCGCCCTCTCGTTTCGTCCA-TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAT
154 CCCGCCCGCTCGTTTCGT-CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * ** * * * *** *
20207256 CGGACAGAGAGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACTCAACCAATCCCCGGCTT
218 CAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
* * * *
20207321 GCACATCCCACCCCTCTGGCCAGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
283 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* ** *
20207386 CGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCTTACCGGATCGAGG
348 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
** * ** * * *
20207451 GTTG-GAATAGCACATGCTGGGCTCGGTCAATACGCAAAGGGGGACCCGATCGATCCCTGGCTTG
413 GTTGCG-GCAGCACATGCTGGGCTCGGGC-ATGTGC---TGGTG--CCG--C-AT---T---TTT
* * * * * **** * *** **
20207515 CGTATCCTGCCCCTCTGGCCGACTGAGCGCCCGCATGC-TCGTTTCATAGGTTGACTTA-GGCAT
462 C-T-T-C-G----TCGGGGC-AC-CATCG-CCGGA-GCATCGCCGGAGAACCTGACCGACGGCAT
* * * * * * ** * * * * *
20207578 ACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTACG-GTAGCACATGCTGGGC-T
515 -TGG-G---GTT-CC-GGC---GATCGG--GGGGCCGGGGGGT--GTG-CGCACATGATGTGCGA
* **** * *** * * * ** * * * *
20207641 TGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT-TGCCGGAGC-ATCGTCGGAAA
565 T-GG---GTGCTGGT-AC-T-TGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCTC-GAGA
** ** * * * * ** *
20207704 AC-CTGA--CCGGT---G-GCA-TTGGGGTTTCGACGATCGG--GGGGGCCAGGGGGGTGTGCCC
621 ACTCACACCCCCTTAAAGAGCATTTGAGATTT-TAC-A--GGTTTGCTGCCA-----GT-AG-CC
* * * ** * ** **
20207759 ACATGATGTG-C-GATGGGTGCTGGTAC-CTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
675 A-TTAAAGTGTCTGA--AATG--GGGACACT-----TT-T-TT-----CAAAT-GGTCA-CAAA-
* ** * ** * * * *
20207821 CTCAAGAACTCACACCCCCTTAAAGAGCATTT-G-AGATTTTACAGGTTTTCTGCCAATTGCCAT
720 ATCTTG---T-ACA----CTT--CGAGTTTTTAGCTGAATTT-----TTTTGTG-C-A-TGCCAA
* ** * * * * ** * * * **** *
20207884 TAAAGTGTCTAAAATGGAAACACTTTTTTCAA--AT-GGTCACAAAA-T-CTTGTACACTGCTAG
767 CAAA---AATACAA-GG-ATCACGTCTACCAAGTTTGGGGC-CAAAACTACCT-T-C-CAAAAAA
* *** ** ** ** * ** * * * * ***
20207944 TTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCCACCAAGTCTGGGC
823 ATTTTA----AAAAATCCTGAAC-CG-CAA-AAAGTTTCAAAAATCA--T-GA-AAAAT-AGAAA
* * ** ** * * ** * * *
20208009 TCAAAACCCCTTTCGAAAAAATTTTA-A
876 ACGAGTCGTCTTGCCATGAAACTTCACG
** ** * ** ** * * ** * * *
20208036 AAAATCCTGAACCGAAAAAAGTT-TCATAAATCATGGAA--AATAGAAAATGAGTCGTCTTGC-C
1 TGAAGGCTTAA--GGGACCA-TTGT-ATGAAT-TTACAAGCCATA-AAAATG-G-CAT-TGGCAC
* * * ** *** * * * *** *
20208097 GT-GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCC-AT--AAAAATGGC
57 ATAGAAA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCACCCTATCGATCCACGGC
* *** * ** * ** *
20208158 ATTG-GCA-CACAG-AAATATGAAGATGTGCCTA-AACCCACCTACCACCCTATCGATCCATGAC
110 -TTGCGCATC-CCGTCTCTCTG--GCCG-GCGTAGTGCCC-GC--CCA-CC---CG---C----C
* * * * * ** *** *
20208219 TTGCGCATCCCGTCTCTTTGGTCGGCATGGTGCCCGC-TCGCCCACCCGCCCTCTCGTTTCGTCC
156 ---CG---CCCG-CTCGTT--TCGTCA-GTTG---GCTTAG-GCATACGGAGT-TC-ATTC--CC
* * * * * *
20208283 -GTTGGCTTAGGCATACGAAGTTCATTCCCAG-TCTAAGATCAGACCGGACTGAGAGTTATGGTA
203 AG-T--C-TAAG-AT-C--AG---A---CCAGACCGAGGGT--TA-CGG-C----A---------
* * * * * *
20208346 GCAGGATCGGCAACACGCAGAGGGGGACCCGATCGATCCCCGACTTACGCATCCCACCCCTCTGG
237 GCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
20208411 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCA
302 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * **
20208476 AAGCATACGAAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTGCGGTAGCACATGCCA
367 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * *
20208541 GGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCACCATCGTTCGAAGCATCGTCGG
432 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CCGGAGCATCGCCGG
* * *
20208606 AGAACCTGACCGATGGCATTGGGGTT-TGGCGATCGGGGGGGCCGGGGGGGTGCGCGCACATGAT
496 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGAT
* * *
20208670 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGACAACT
559 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
20208735 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAATAGCCATTAAATTGTTTGA
624 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
20208800 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGACTTTTT
689 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
20208865 TTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAACTTTGGGGCTAAAAAT-CCTTCCGA
754 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAA
* ** ** * * * *
20208929 AAAAATTTAAAAAAATCCCAAACCGCAAAAAGGATCAGAAATCGTGAAAAATA-AAACATGAATC
819 AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA-ACGAGTC
* *
20208993 ATCTTGCCATGAAACTTGACG
883 GTCTTGCCATGAAACTTCACG
20209014 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
*
20209079 TGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * ** * * * *
20209144 CAGGCGTAGTGCCCACCCGTCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* ** * * ** * *
20209209 TATTCGTAGTCTAAGAAT-GGA-CAGGACCAAGGGTTGTGGCAACAGGATCGACAGCATGCAGAG
196 CATTCCCAGTCTAAG-ATCAGACCA-GACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAG
* ** * * * * *
20209272 GGGGAGCCGACCGATCCCCGACTTGCGCATCCCGCCCATCTGGTCGACTGAGCGCCCACACGCTC
259 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *** *
20209337 ATTTCGTGGGTTGACTTAAGCATGTAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
324 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
20209402 GTCTAAGATCAGACGGGACCGAGGGTTGCGGTAGCACATGCTAGGATCGAGCATGTGCTGGTGCC
389 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
20209467 GCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGG
454 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
* * * * *
20209532 GTTCCGGCCACCAGGGGGGCTGAGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGGACTTGG
519 GTTCCGGCGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
20209597 CCCTTATATTGGCCTCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
582 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
20209662 AGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
647 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
20209727 GTCACAAAATATTGTACACATCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAAAAAAAATACA
712 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
** * * * *
20209792 AGGATCATATCTACCAAGTTTGGGGCCAAAAAT-CCTTTCGAAAAAATTTTAAAAAATCCCGAAC
777 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGAAC
* * * * *
20209856 TGC-AAAGGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCGTGAAACTTCACG
842 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* ***
20209917 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* * *
20209982 TGAAGATTTGCCCAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* ** * * * * ** *
20210047 CCGGCGTAGTGCCCACCCGTCCGCCCGCCCACTTGTTTCATCGGTTGGCTTAGTTATACAGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* ** * * * * *
20210112 CATTCCCAGTCTAAGATCAGA-CAGGACCAAGGGTTGTGGCAACAAGATCGGCAGCATGCAGAAG
196 CATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGG
* ** * * * *
20210176 GGGAGCCGACCGATCCCTGGCTTGCGCGTCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCG
260 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
20210241 TTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
325 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
20210306 TCTAAGATCGGACTGGACCGAGTGTTGCGGCAGCACATGCTGGGATCGGGCATGTGCTAGTGCCG
390 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
20210371 CATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGG
455 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * * * *
20210436 TTCCGGCCACCGGGGTGGCCGAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGGACTTGTC
520 TTCCGGCGATCGGGG-GGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * **
20210501 CCTTATATTAGCCCCCTATCCCTCACCAAACCTCGAGAACTCGTACCCCCTTAAAGAGCATTTGA
583 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * *
20210566 GATTTTACAGGTTTGCTTCCAGTGGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATTG
648 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
20210631 TCACAAAATATTGTACACGTT-GAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACA
713 TCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
** ** * **
20210695 AGGATCATATCTACCAAGTTTGATGCCAAAA--ACCTTCCGAAAAAATTTTAAAAAATCCCAAAC
777 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGAAC
** *
20210758 TAC-AAAAGTTTCAAAAATCATGAAAAATAGAAAAC-AGGTCGTCTTGCCGTGAAACTTCACG
842 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACG
* *
20210819 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACACAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* * *
20210884 TGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTTTCTCTGC
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * * * * * * *
20210949 CCGACATGGTGCCCGCTCGCCCGCCTGGCCGCTCGTTTCATCGGTTGGATTAGTCATATGGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
** * * * ** ** ** **
20211014 CATTCGTAGTCTAAGTTTAGACC-GAATCGAGGGTTGTGATAGCAGGATCGGTAGCACATAGAGG
196 CATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGG
*** ** * * * *
20211078 GGGACCCAACCGATCCCCGGCTTATGCATCCCGCACCTCTAGCCGGCTGAGCGACTGCACGCTCG
260 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * * *
20211143 TTTCATGAGTTGACTTACGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAG
325 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
20211208 CCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCA
390 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * ** * * * *
20211273 CA-TTTTCTT-GTCAGGGCTCCATCATCAGAGCATCG-TGAGAGAACCTGACCGGCGGCATTAGG
455 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG-GAGAACCTGACCGACGGCATTGGG
* * * *
20211335 GTTCCGACGATCGGGGGGGTCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGC
519 GTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
20211400 CCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCAC-CCACCCTTAAAGAGCATTTA
583 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCCTTAAAGAGCATTTG
* * *
20211464 AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAATTGTTTGAAATGGGGACACTTTTTTCAAATG
647 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
20211529 GTCAAAAAAT-TTTTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACA
712 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * ** **
20211593 AGGATCATGTCTACCAAGTTTGTGGTAAAAACT-CCTTCCAAAAAAATTTTAAAAAATCCCAAAC
777 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGAAC
** * *
20211657 CTTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACG
842 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * ** *
20211719 TGAAGGCTT-AGAGGACCATTGTATCAATTTACAAGCCATAGAAATTTCATTGGC-CTACAGAAA
1 TGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-ATAGAAA
* * *
20211782 TATGAAGATGTGCCTAAACCCACCTAACACACTATCGATCCACGGCTTGCGCATCCAGTCTCTCT
64 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * *
20211847 GGCCGGCGTAGTGCCCACCTACCCGCCCG-CCGTTCATTTCATC-GATCGACTTAGGCATACGGA
129 GGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAG-TTGGCTTAGGCATACGGA
* * * * * **
20211910 GTTCATTCCCAATCTAAGATC-GAATCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAG
193 GTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAG
* ** * * * ** **
20211974 AGGAGGACCCGACCAATCCCCGGCTTGTGCATCCCGCCCTTCTGGCCTACTGAGCGCCCTTACGC
257 AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
20212039 TCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G--------
322 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* **
20212092 -A--C------C--A---GACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTG
387 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * * ***
20212143 TCGTATTTTTCTTCATCGGGGCACCATCACCGAAGCATCGCCAGAGAACCTGACCGGTAGCATTG
452 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
* * * * *
20212208 GGGTTCCGGTGATCGGAGGGGCCGAGGGGGGTGTGCGCACATGTTGTGCGATGTGTCCTAGTACT
517 GGGTTCCGGCGATCGG-GGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
20212273 TGGCCCTTATATT-GCCCCCTATCCCTCACCAAACCTTGAGAACTCACACCCCCTTAAAGAGTAT
579 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
20212337 TTCG-GATTTTATAGGTTTGTTGCCAGTAGCCATTAATGTGTCTAAAATGGGGACACTTTTTTCA
644 TT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
20212401 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAA
708 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
20212466 TACAAGGATCATGCCTACCAAGTTTGGGGCAAAAAAT-CCTTGCAAAAAAATTTTAAAAAAT-CT
773 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCT
* ** * * * *
20212529 CGAACCGTAAAAAGTTTTGAAAATCATTAAAAATAGAAAACGAGTTGTCCTGCCATCAAACTTCA
838 -GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
20212594 CA
902 CG
* ** *
20212596 T-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCACGCAGGAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
*
20212660 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTTG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-TG
* *
20212725 G-CGGTGTAGTGCCCGCCTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
130 GCCGGCGTAGTG--C-CC-G-CC-CAC--CCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
* * *** * *
20212789 TACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGTAGCAGCAGGATTGGCAGCA
187 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCA
* * * * *
20212854 CGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTTGCCGGCTGAGCGCCTG
252 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* ** * * * * *
20212919 CATGCTCGTTTTATGGGTTAACCTAGGCATACGGGGTTCTTTCCCAGTGTAAGCATACGGAGTTC
317 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* *
20212984 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGCCTCGGGCATGTGC
382 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
20213049 TGGTGCTGTATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGG
447 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGG
* * *
20213114 CATTGGGGTTCCGACGATCGGGGGGTCGGGACGGGTGTGCGCTCATGATGTGCGATGGGTGCTGG
512 CATTGGGGTTCCGGCGATCGGGGGGCCGGG--GGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
20213179 TACTTGGCCCTTATATTGGTCCCCTATCCCTCATTAAACCTCGAGAACTCACACCACCTTAAAGA
575 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
20213244 GCATTTGAGATTTTACAGGCTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
640 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
20213309 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
705 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** * * *
20213374 AAATATGAGGATCATGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTTAAAAAAT
770 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAAT
* ** * * * *
20213438 -CTCACACCGCAAAAAGTTTTGAAAATCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACG
835 CCTGA-ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
20213502 TCACG
899 TCACG
* * * * *
20213507 TGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATATAAATTGCATTGGCTCACAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* * * *
20213572 TGAAGATATGTCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** *
20213637 CCGGCGTAGTGCCCG----CTTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
** *
20213698 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGG
196 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGG
* * * *
20213763 GGACCCGGTCGATCCCCGGCTTGCGCATCCCACTCCTTTGGCCGGCTGAGTGCCCGCACGCTCGT
261 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
20213828 TTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT--TGAG--------C---
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
20213879 C----A---GACC--A---AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGGGCCGT
391 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
**
20213932 ATTTTTCTTCACCGGGG---CA----C----CATCGCCGGAGAACCTGACCGACGGCATTGGGGT
456 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
* ** * * *
20213986 TTCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGAACTTGGCC
521 TCCGGCGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
20214051 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCCTTAAAGAGCATTTGA
584 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGA
* *
20214116 GATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG
648 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
20214181 TCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATACAA
713 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * **
20214246 GGATCACGTCTACCAAGTTTGCGGCCAAAACT-CCATCCAAAAAAATTTTAAAAAATCCAAAACC
778 GGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGAACC
* *
20214310 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTGACG
843 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * *
20214371 TGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATCAAAATGGCATTGGCACAGAAAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* * * **
20214436 TGAAGATGTGCCTAAATCCACCTACCACCCTATCGATTCATGGCTTGCGCATCTTGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
20214501 CCGGCGTAGTGCCCGCGCGCCTGCACGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* * * *
20214566 CATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAACAGGATCGGCAGCACGTAGAGGG
196 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGG
* * **
20214631 GGACCTGGTCGATCCCCGGCTTGCGCATCCCAG-CCCTCTGGCCGGTTGAGCGCCCGCACATTCG
261 GGACCCGGTCGATCCCCGGCTTGCGCATCCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
20214695 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--G--TA---AG---------A-
325 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * **
20214741 TC--AGATCGGA----A-TGAGGGTTACAGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTA
390 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * *
20214799 CTTTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCACCAGAGAAGCTGACCGACGGCATTGGGG
455 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * * * *
20214864 TTCCGACGATCGGTGGGGCTGGGGAGTGTGCGCTCATGATGTGCGAGGGGTGCTGGTACTTGGCC
520 TTCCGGCGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
20214929 CTTATATTGG-CCCCTATCCCTCATCAAACCTCGAAAACTCACACTCCCC-TATAGAGCATTTGA
584 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCCTTAAAGAGCATTTGA
* ** * *
20214992 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATCAGGACATTTTTTTCAAATAG
648 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * * *
20215057 TCACTAAATCTTGTACACTTCGAGTTTCTAGCTAAATGTTTTTT-TGCCTACCAATAAAAATACA
713 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACA
***
20215121 AGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCTGGAAAAA-TTTAAAAAAT-CTCGAA
777 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCT-GAA
* * * *
20215183 CCGAAAAAAGCTTT-GAAAATCATGAAAAATAGAAAACGATTCGTCCTGCCATGAAACTTCACG
841 CCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
20215246 TGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-T-GAAA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAA
* * *
20215309 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCAATGGCTTGCGCATCCCGTCTCTCT
64 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
20215374 GGCCGGCGTAGTGCCCG------CG--TGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
129 GGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAG
* * * ** * * ** ** *
20215431 TTCATTCCCAGTCTAAGATCGGATCGGATTGAAGGTTGCGATAGCAGGATCGGTAGCACACAGAG
194 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAG
* **
20215496 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTTGGCTGAGCGCCCGCACGCTC
259 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
20215561 ATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCA
324 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
20215626 GTCAAAGATCGGACCAGACAGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTAGTGCC
389 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * **
20215691 ACATTTTTCTTCG-CGGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTTA
454 GCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGG
* * * *
20215755 CGTTCTGGTGATCTGGGGGGCCGTGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
518 GGTTCCGGCGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
20215820 GGCCCTTATATAT-GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
580 GGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
20215884 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAA
644 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
20215949 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAA-
709 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* ** *
20216013 AGCAGGGATCACGTCTAAAAAGTTTGGGGCCAAAACT-CCTTCTAAAAAAATTTTAAAAAATCCT
774 A-CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCT
** **
20216077 GAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
838 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
20216142 G
903 G
* * ***
20216143 TGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTTGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
** * * * *
20216208 TGAAGATGTGGATAAACCCACCTACCACCCTATCCATCAATGGCTTGCGCATTCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
20216273 CCGACGTAGT----G----CCCGCCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
131 CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* * * * * ** * *
20216330 CATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAAGATCGGTAACACGCCGAGGG
196 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGG
* ** * * * * * *
20216395 GGATCCGACCGATCCTCGACTTGCGCATCTCGCCCCTTTGGTCGGCTGAGCGCCCGCACACTCGT
261 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * **
20216460 TTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGT
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * *
20216525 CTAAGATCGAACCAGACAGAGGATTAG-GGCAGCACATGCTGGACTCGGGCATCTACTGGTGCCG
391 CTAAGATCGGACCGGACCGAGGGTT-GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
20216589 TATTTTTCTTCGTCGGGGCACCATCGCTGAAGCATCGTCGGAGAACCTGACCGACGGCATTGGGG
455 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* **
20216654 TTTCAACGATCGGGGGGGCCGGAAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
520 TTCCGGCGATC-GGGGGGCC-G--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
20216719 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
581 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
20216784 GAGATTTTACATGTTTGCTGCCAATAGCCATCAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
646 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
20216849 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAAAAAAAATAC
711 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * * ** * *
20216914 AAGGATCACCTCTACCATGTTAGGGGCAAAAAAT-CCTTCTGAAAAAATGTTAAAAAATTCTGAA
776 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGAA
** *
20216978 ATGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
841 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * ***
20217041 TGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* * * * *
20217106 TGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCATGACTTGCGCATCTCGTCTC
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
20217166 GGGCATGTGC
Statistics
Matches: 18287, Mismatches: 3421, Indels: 2653
0.75 0.14 0.11
Matches are distributed among these distances:
827 172 0.01
828 1 0.00
829 2 0.00
832 2 0.00
833 1 0.00
834 1 0.00
835 156 0.01
836 3 0.00
840 1 0.00
841 2 0.00
842 1 0.00
843 1 0.00
844 1 0.00
852 2 0.00
855 1 0.00
857 2 0.00
859 3 0.00
860 3 0.00
861 80 0.00
862 71 0.00
863 330 0.02
864 387 0.02
865 6 0.00
866 5 0.00
867 185 0.01
868 248 0.01
869 123 0.01
870 461 0.03
871 46 0.00
872 86 0.00
873 358 0.02
874 264 0.01
875 258 0.01
876 404 0.02
877 264 0.01
878 56 0.00
879 50 0.00
881 178 0.01
882 26 0.00
883 217 0.01
884 55 0.00
885 344 0.02
886 98 0.01
887 14 0.00
888 18 0.00
889 5 0.00
890 4 0.00
891 14 0.00
892 16 0.00
893 190 0.01
894 780 0.04
895 132 0.01
896 214 0.01
897 550 0.03
898 542 0.03
899 731 0.04
900 473 0.03
901 205 0.01
902 1584 0.09
903 2604 0.14
904 1315 0.07
905 16 0.00
906 9 0.00
907 177 0.01
908 7 0.00
909 5 0.00
910 142 0.01
911 505 0.03
912 125 0.01
913 2 0.00
914 18 0.00
915 3 0.00
916 3 0.00
917 7 0.00
918 6 0.00
919 15 0.00
920 5 0.00
921 20 0.00
922 12 0.00
923 6 0.00
924 6 0.00
925 16 0.00
926 23 0.00
927 16 0.00
928 30 0.00
929 23 0.00
930 36 0.00
931 12 0.00
932 16 0.00
933 13 0.00
934 12 0.00
935 17 0.00
936 4 0.00
937 11 0.00
938 4 0.00
939 6 0.00
940 7 0.00
941 16 0.00
942 5 0.00
943 12 0.00
944 11 0.00
945 6 0.00
946 5 0.00
947 6 0.00
948 1 0.00
949 3 0.00
950 7 0.00
951 6 0.00
952 3 0.00
953 4 0.00
954 9 0.00
955 6 0.00
956 4 0.00
957 3 0.00
958 13 0.00
959 33 0.00
960 16 0.00
961 16 0.00
962 35 0.00
963 9 0.00
964 22 0.00
965 22 0.00
966 23 0.00
967 7 0.00
968 7 0.00
969 7 0.00
970 3 0.00
971 13 0.00
972 9 0.00
973 8 0.00
974 14 0.00
975 18 0.00
976 46 0.00
977 22 0.00
978 13 0.00
979 5 0.00
980 5 0.00
981 6 0.00
982 13 0.00
983 9 0.00
984 52 0.00
985 4 0.00
986 3 0.00
987 5 0.00
988 4 0.00
989 19 0.00
990 6 0.00
991 12 0.00
992 7 0.00
993 10 0.00
994 25 0.00
995 28 0.00
996 20 0.00
997 25 0.00
998 18 0.00
999 12 0.00
1000 7 0.00
1001 16 0.00
1002 15 0.00
1003 13 0.00
1004 20 0.00
1005 24 0.00
1006 22 0.00
1007 15 0.00
1008 20 0.00
1009 25 0.00
1010 46 0.00
1011 23 0.00
1012 26 0.00
1013 17 0.00
1014 8 0.00
1015 7 0.00
1016 5 0.00
1017 10 0.00
1018 14 0.00
1019 14 0.00
1020 26 0.00
1021 17 0.00
1022 7 0.00
1023 17 0.00
1024 494 0.03
1025 677 0.04
1026 768 0.04
1027 806 0.04
1028 701 0.04
1029 788 0.04
1030 662 0.04
1031 644 0.04
1032 640 0.03
1033 608 0.03
1034 524 0.03
1035 590 0.03
1036 655 0.04
1037 602 0.03
1038 493 0.03
1039 518 0.03
1040 517 0.03
1041 385 0.02
1042 512 0.03
1043 439 0.02
1044 369 0.02
1045 444 0.02
1046 471 0.03
1047 414 0.02
1048 641 0.04
1049 278 0.02
1050 500 0.03
1051 362 0.02
1052 436 0.02
1053 229 0.01
1054 293 0.02
1055 589 0.03
1056 417 0.02
1057 278 0.02
1058 274 0.01
1059 351 0.02
1060 422 0.02
1061 322 0.02
1062 238 0.01
1063 266 0.01
1064 335 0.02
1065 306 0.02
1066 312 0.02
1067 274 0.01
1068 318 0.02
1069 292 0.02
1070 345 0.02
1071 1304 0.07
1072 513 0.03
1073 167 0.01
1074 163 0.01
1075 155 0.01
1076 153 0.01
1077 339 0.02
1078 137 0.01
1079 183 0.01
1080 188 0.01
1081 212 0.01
1082 125 0.01
1083 299 0.02
1084 80 0.00
1085 184 0.01
1086 61 0.00
1087 672 0.04
1088 118 0.01
1089 70 0.00
1090 101 0.01
1091 77 0.00
1092 80 0.00
1093 75 0.00
1094 94 0.01
1095 380 0.02
1096 129 0.01
1097 67 0.00
1098 65 0.00
1099 60 0.00
1100 43 0.00
1101 98 0.01
1102 64 0.00
1103 68 0.00
1104 73 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGG
GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
TCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTACCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCA
AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
Found at i:20200746 original size:26 final size:26
Alignment explanation
Indices: 20200716--20200768 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20200706 GTTGACTTAG
*
20200716 GCATAC-GAAGTTCATTGCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
20200742 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20200768 G
1 G
20200769 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20200990 original size:26 final size:26
Alignment explanation
Indices: 20200961--20201012 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20200951 ACTTGGCCCA
20200961 CATATGGAATTCATTCCCAGTCTAAG
1 CATATGGAATTCATTCCCAGTCTAAG
* *
20200987 CATATGGAGTTCATTCTCAGTCTAAG
1 CATATGGAATTCATTCCCAGTCTAAG
20201013 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (26 bp):
CATATGGAATTCATTCCCAGTCTAAG
Found at i:20201167 original size:244 final size:244
Alignment explanation
Indices: 20200726--20201203 Score: 604
Period size: 244 Copynumber: 2.0 Consensus size: 244
20200716 GCATACGAAG
*
20200726 TTCATTGCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCG
1 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCG
* ** * * * *
20200791 ACAGCACATGCTAGGCTTTCGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCA
66 ACAGCACATGATAGGCTCACGCATGTGCTAGTGCCACATTTTTCTTCGTAGAGGCACCATCCTCA
*
20200856 GAGCATCGCAAGAGAACTTGACCAGCGACATTGGGGTTCCAACGATCGGAGGGGCCGGGGAGGGT
131 GAGCATCGCAAGAGAACCTGACCAGCGACATTGGGGTTCCAACGATCGGAGGGGCCGGGGAGGGT
*
20200921 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCACATATGGAA
196 GTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCACATATGGAA
** * *
20200970 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTAC
1 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-C
** * * **
20201035 GGTAGCACATGATGGGCTCAGGCATGTGCTAGTGCCTTATTTTTCTTCGTAGAGGCACCATCC-C
65 GACAGCACATGATAGGCTCACGCATGTGCTAGTGCCACATTTTTCTTCGTAGAGGCACCATCCTC
* * * * * * ** * *
20201099 TGGAGGATTGTC-GGAGAACCTGATCGGCGGTATTGGGGTTTCGACGATCAGG-GGGGCCGGGG-
130 -AGAGCATCG-CAAGAGAACCTGACCAGCGACATTGGGGTTCCAACGATC-GGAGGGGCCGGGGA
* *
20201161 GGGTGTGCGCACTTGATGTACGGTGGGTGCTGGTACTTGGCCC
192 GGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCC
20201204 TTATATTGGC
Statistics
Matches: 198, Mismatches: 32, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
244 99 0.50
245 96 0.48
246 3 0.02
ACGTcount: A:0.20, C:0.23, G:0.32, T:0.25
Consensus pattern (244 bp):
TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCG
ACAGCACATGATAGGCTCACGCATGTGCTAGTGCCACATTTTTCTTCGTAGAGGCACCATCCTCA
GAGCATCGCAAGAGAACCTGACCAGCGACATTGGGGTTCCAACGATCGGAGGGGCCGGGGAGGGT
GTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCACATATGGAA
Found at i:20203873 original size:13 final size:12
Alignment explanation
Indices: 20203838--20203869 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
20203828 GTGATGGTAC
*
20203838 TTGGCCCTTATA
1 TTGGCCCCTATA
20203850 TTGGCCCCTATA
1 TTGGCCCCTATA
20203862 TTGGCCCC
1 TTGGCCCC
20203870 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:20206330 original size:26 final size:26
Alignment explanation
Indices: 20206294--20206346 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20206284 GTTGACTTAG
* *
20206294 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20206320 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20206346 G
1 G
20206347 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20207417 original size:26 final size:26
Alignment explanation
Indices: 20207381--20207433 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20207371 GTTGACTTAG
20207381 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20207407 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20207433 G
1 G
20207434 ATCTTACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20210292 original size:26 final size:26
Alignment explanation
Indices: 20210256--20210311 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
20210246 TGGGTTGACT
20210256 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
20210282 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
20210308 TAAG
1 TAAG
20210312 ATCGGACTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:20211191 original size:26 final size:26
Alignment explanation
Indices: 20211161--20211213 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20211151 GTTGACTTAC
*
20211161 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
* *
20211187 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
20211213 G
1 G
20211214 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:20212974 original size:26 final size:26
Alignment explanation
Indices: 20212945--20212997 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20212935 GTTAACCTAG
* * *
20212945 GCATACGGGGTTCTTTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20212971 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20212997 G
1 G
20212998 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20216507 original size:26 final size:26
Alignment explanation
Indices: 20216477--20216529 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20216467 GTTGACTTAG
*
20216477 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20216503 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20216529 G
1 G
20216530 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:20217695 original size:590 final size:594
Alignment explanation
Indices: 20216568--20217755 Score: 1841
Period size: 590 Copynumber: 2.0 Consensus size: 594
20216558 ACATGCTGGA
* * * *
20216568 CTCGGGCATCTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGAAGCATCGTCGGAGA
1 CTCGGGCATCTACTGGTGACGCATTTCTCTTCGTCGGGGCACCATCGCTGAAGCATCGCCGGAGA
*
20216633 ACCTGACCGACGGCATTGGGGTTTCAACGATCGGGGGGGCCGGAAGGGGGTGTGCGCACATGATG
66 ACCTGACCGACGACATTGGGGTTTCAACGATCGGGGGGGCCGG-AGGGGGTGTGCGCACATGATG
*
20216698 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
130 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
20216763 ACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAATAGCCATCAAAGTGTCTAAA
195 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATCAAAGTGTCTAAA
* *
20216828 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTT
260 ATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAAGTTTTT
*
20216893 TGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCATGTTAGGGGCAAAAAATCCTTCTGAAA
325 TGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTAGGGGCAAAAAATCCTTCTGAAA
* * *
20216958 AAATGTTAAAAAATTCTGAAATGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
390 AAATGTTAAAAAATTCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
20217023 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATTG
455 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGG
** *
20217088 CATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCATGACTTG
520 CATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGACTTG
*
20217153 CGCATCTCGT
585 CGCATCCCGT
* * *
20217163 CTCGGGCATGTGCTGGTGACGCATTTCTCTTCGTCGGGGCACCATCG-TCGGAGCATCGCCGGAG
1 CTCGGGCATCTACTGGTGACGCATTTCTCTTCGTCGGGGCACCATCGCT-GAAGCATCGCCGGAG
* ** *
20217227 AACCTGACTGGTGACATTGGGGTTTCGACGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATG
65 AACCTGACCGACGACATTGGGGTTTCAACGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATG
*
20217290 TGCAATGGGTGCTGGTATTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCAAGAACTC
130 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * *
20217354 ACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
195 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATCAAAGTGTCTAAA
*
20217418 ATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTT
260 ATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAAGTTTTT
* * ** * * * *
20217483 TGTGCATGGCAAGAAAAATGGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAG
325 TGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTAGGGGCAAAAAATCCTTCT-GA-
* * * * *
20217547 AAAACT-TTAAAAAATTCCGAACCGTAAATAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
388 AAAAATGTTAAAAAATTCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
20217611 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAAT
453 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAAT
* * * *
20217676 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
518 GGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGACT
20217741 TGCGCATCCCGT
583 TGCGCATCCCGT
20217753 CTC
1 CTC
20217756 TCTGGTCGAC
Statistics
Matches: 540, Mismatches: 50, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
589 1 0.00
590 355 0.66
591 40 0.07
592 50 0.09
594 2 0.00
595 92 0.17
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (594 bp):
CTCGGGCATCTACTGGTGACGCATTTCTCTTCGTCGGGGCACCATCGCTGAAGCATCGCCGGAGA
ACCTGACCGACGACATTGGGGTTTCAACGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGT
GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATCAAAGTGTCTAAAA
TGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAAGTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTAGGGGCAAAAAATCCTTCTGAAAA
AATGTTAAAAAATTCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGACTTGC
GCATCCCGT
Found at i:20218008 original size:26 final size:26
Alignment explanation
Indices: 20217972--20218050 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
20217962 GTTGACTTAG
20217972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20217998 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20218024 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20218050 G
1 G
20218051 ATCGGATCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20219827 original size:26 final size:26
Alignment explanation
Indices: 20219791--20219841 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20219781 TTGACTTAGG
* *
20219791 CATACGGAGTTTATTCCCAGTCTAAC
1 CATACGAAGTTCATTCCCAGTCTAAC
20219817 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
20219842 GATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAC
Found at i:20220420 original size:886 final size:886
Alignment explanation
Indices: 20217163--20220794 Score: 4536
Period size: 926 Copynumber: 4.0 Consensus size: 886
20217153 CGCATCTCGT
* *
20217163 CTCGGGCATGTGCTGGTGACGCATTTCTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
1 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
20217228 ACCTGACTGGT-GACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
66 ACCTGACCGGTCG-CATTGGGGTTCCGACGAT-----GGG--GGGGGGTGTGCGCACATGATGTG
* * **
20217292 CAATGGGTGCTGGTATTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
123 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
20217356 A-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
188 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
20217420 GGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTG
253 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
* * ** * *
20217485 TGCATGGCAAGAAAAATGGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAGAAA
317 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
20217550 ACTTTAAAAAATTCCGAACCGTAAATAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
382 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
20217615 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCA
447 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
**
20217680 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
512 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** *
20217745 CATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGC
577 CATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-T------GCCCGCTCATTTCATCGGTTGGC
* * * *
20217810 TTACGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-AGAGGGTTGC-AGC-AGCAGG
634 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGA-AGGGTTACGA-CTAGCAGG
* * * * * *
20217872 ATC-GAAGCATGCATTG-GGGGTCCCGACCGATCCCCGGCTTGTGCATCAT-GCCCCTCTGGCCG
697 ATCGGCAGCA--CATAGAGGGGACCCGACCGAT-CCTGACTTGCGCATC-TCGCCCCTCTGGCCG
* *
20217934 GCTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
758 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT---
*
20217999 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACC
820 -A-AC------CA-T---A--C---G---A---AGTTCATTCCCAGTCTAAGATCGGACCAGACC
* *
20218064 GAGGGTTGTGACAACACATGCTGGG
862 GAGGGTTGCGACAGCACATGCTGGG
* *
20218089 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCGCCGGAGA
1 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
20218154 ACCTAACCGG-CGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATCATAT
66 ACCTGACCGGTC-GCATTGGGGTTCCGACGA-T-----GG--GGGGGGGTGTGCGCACATGATGT
20218218 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
122 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
20218283 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT--AGTCTCTGAAA
187 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
20218346 TGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTTTT
252 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTG
* **
20218411 TGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTT-GGGCCTAAAACTCCTTTTGAAAA
317 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAA
* * * * * *
20218475 AATTTTAAAAAACCCCGAGCCACAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGCCT
381 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
20218540 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
446 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
20218605 ACTGGCATGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGC
511 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
20218670 GCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCTGCCTGCCTGCCCGTTCGTTTCGTCGGTTGG
576 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTG-C--CC-G--C--TCATTTCATCGGTTGG
* **
20218735 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAAACCAAGGGTTACTG--TAGCAG
633 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATGAAGGGTTAC-GACTAGCAG
* * * * * * *
20218797 GATTGGCAGCCCGTAGAGGGGCATCCGGCCGATCCTGAGCTTGTGCATCCCGCCCCTCTGGCCGG
696 GATCGGCAGCACATAGAGGGG-ACCCGACCGATCCTGA-CTTGCGCATCTCGCCCCTCTGGCCGG
* * * * * *
20218862 CTGAGCACCCGCACGCTCATTTCGTTGATTGACTTAGGCATACTGAGTTCATTCCTAGTCTAAGC
759 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACC
* * * * * * * *
20218927 ATATGGAGTTCATTTGCCAGTCTATGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
824 ATACGAAGTTCA-TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * **
20218991 CTCAGGCATGTTCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCG-CTGGAGCATCATCGGAG
1 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAG
20219055 AACCTGACCGGTCGCATTGGGGTTCC-AGCGATCGGGGGAGGGGGTGTGCGCACATGATGTGCGA
65 AACCTGACCGGTCGCATTGGGGTTCCGA-CGAT--GGGG-GGGGGTGTGCGCACATGATGTGCGA
* * *
20219119 TGGGTGCTGGTTCTTGGTCCTTATATTGGCCCCCTATCCCCCATCAAACCTTGAGAACTCACACC
126 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
* * *
20219184 CCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAATGGG
191 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
** *
20219249 GACGGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGC
256 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGC
* *
20219314 ATGCCAA-AAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
320 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
20219378 TTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTTCTTGCC
385 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
20219443 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
450 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
20219508 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCAT
515 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
20219573 CCCGTCTCTCTAGTCGGCGTAGTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGCATACG
580 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGCATACG
** * *
20219638 GAGTTCAGACCCAGTCTAAGATCAGACCAGATGAAGGGTTACGA-TAGCAGGATCGGCAGTACAC
645 GAGTTCATTCCCAGTCTAAGATCAGACCAGATGAAGGGTTACGACTAGCAGGATCGGCAGCACAT
* * * *
20219702 AGAGGGAGACCCGACCGATCCCTGACTTGCACATCTCGCCCCTCTGACCGGTTGAGCGCCCGCAT
710 AGAGGG-GACCCGACCGAT-CCTGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
20219767 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAACCATACGAAGTTCATT
773 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGAAGTTCATT
* * * *
20219832 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCTGCACATGCTAGG
838 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * ** *
20219881 CTCGGGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGTTACCATCGTCGGAGCATTGCCGGAGA
1 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
20219946 ACCTGACCGATCG-ATTGGGGTTTCGGCGAT-TGGGGGGGTGTGCACACATGATGTGTGATGGGT
66 ACCTGACCGGTCGCATTGGGGTTCCGACGATGGGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
20220009 GCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACTCACACCCCCTT
131 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
* * * *
20220074 AAAGAGCATTTGTGATTTTACAGGTTTACTGCCAGTTGCCGTTAAAGTGTCTGAAATGGGGACAC
196 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
20220139 TTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCC
261 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCC
*
20220204 AACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
325 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
20220269 AAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAACATAGAAAACGAGTCGTCTTGCCATGAA
390 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
20220334 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACG
455 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * *
20220399 TAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCCATCCACGACTTGCGTATCCCGT
520 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * **
20220464 CTCTCTGACCGGCGTAGTGCCGGCCCACCCGCTCACTCGTTTCATCGGTTGGCTTAGGCATACGG
585 CTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCA----TTTCATCGGTTGGCTTAGGCATACGG
* *** ** * * *
20220529 AGTTCATTCCCAGTCTAAGATCGGATTGGACTG-AGGGTTGTGACT-GCAGGATCAGTAGCACGT
646 AGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAAGGGTTACGACTAGCAGGATCGGCAGCACAT
* * * * *
20220592 AGAGGGG----GAGC-AT-CTCACTTACGCATC-CTGCCTCTCTGGCCGGCTGAGTGCCCGCACG
710 AGAGGGGACCCGACCGATCCTGACTTGCGCATCTC-GCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * * *
20220650 CTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTC
774 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGAAGTTCATTC
* **
20220715 CCAGTCCAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
839 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
20220763 CTCGAGCATGCGCTGGTGCCGTATTTTTCTTC
1 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
20220795 CCCAGGGACC
Statistics
Matches: 2392, Mismatches: 264, Indels: 144
0.85 0.09 0.05
Matches are distributed among these distances:
881 1 0.00
882 161 0.07
884 4 0.00
885 212 0.09
886 269 0.11
889 15 0.01
890 187 0.08
891 183 0.08
892 7 0.00
893 1 0.00
895 1 0.00
896 4 0.00
897 130 0.05
898 4 0.00
899 318 0.13
900 21 0.01
901 8 0.00
902 124 0.05
903 1 0.00
907 1 0.00
912 1 0.00
915 1 0.00
916 2 0.00
918 1 0.00
919 1 0.00
921 2 0.00
922 2 0.00
923 1 0.00
924 2 0.00
925 11 0.00
926 422 0.18
927 212 0.09
928 33 0.01
929 49 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (886 bp):
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGTCGCATTGGGGTTCCGACGATGGGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGATGAAGGGTTACGACTAGCAGGATCGGCAGCACATAGAGGG
GACCCGACCGATCCTGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGAAGTTCATTCCCAGTCT
AAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
Found at i:20221160 original size:26 final size:26
Alignment explanation
Indices: 20221123--20221173 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20221113 GTTGACTTAG
*
20221123 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20221149 GCATAC-GAAGTTCATTCCCAGTCTA
1 GCATACAG-AGTTCATTCCCAGTCTA
20221174 TGATCGGGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20221831 original size:16 final size:16
Alignment explanation
Indices: 20221810--20221842 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
20221800 CCGATGTAGT
*
20221810 GCCCGCCCGCCCGCTC
1 GCCCGCCCGCCCACTC
20221826 GCCCGCCCGCCCACTC
1 GCCCGCCCGCCCACTC
20221842 G
1 G
20221843 TTTCGTCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.67, G:0.24, T:0.06
Consensus pattern (16 bp):
GCCCGCCCGCCCACTC
Found at i:20222050 original size:26 final size:26
Alignment explanation
Indices: 20222020--20222072 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20222010 GTTGACTTAG
* * *
20222020 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20222046 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20222072 G
1 G
20222073 ATGGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20222943 original size:26 final size:26
Alignment explanation
Indices: 20222907--20222956 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20222897 TCATGGTGCC
20222907 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
* **
20222933 TACGGTGTTCATTCTGAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20222957 ATCGGATCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:20223580 original size:291 final size:292
Alignment explanation
Indices: 20223046--20223628 Score: 888
Period size: 291 Copynumber: 2.0 Consensus size: 292
20223036 CCATCACTGG
* ** * * *
20223046 AGCATCACTGGAGAACCTGACTGGCGGCATTGGGGTTCTGGTGATGGGGGGGCCGGGGGGGTGTG
1 AGCATCACCGGAGAACCTGACCAGCCGCATTGGGGTTCCGGTGATGGGGGGGCCGAGGGGGTGTG
* * * *
20223111 TGCACATGATGTGCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTGTCCCTTATCAAAC
66 CGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCTTATCCCTCATCAAAC
* * *
20223176 CTCGAAAACTCACTCCCTCTTAAAGGGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTA
130 CTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTA
*
20223241 AAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAG
195 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
20223305 CTGAATTTTTTTATGCATGCCAACCAAAATACA
260 CTGAATTTTTTTATGCATGCCAACAAAAATACA
*
20223338 AGCATCGCCGGAGAACCTGACCAGCCGCATTGGGGTTCCGGTGATCGGGGGGGCC-AGGGGGTGT
1 AGCATCACCGGAGAACCTGACCAGCCGCATTGGGGTTCCGGTGAT-GGGGGGGCCGAGGGGGTGT
* *
20223402 GCGCACATGATGTGTGATGGGTGTTGGTACTAT-CCCTTATATTGG-CCCTCTATCCCTCATCAA
65 GCGCACATGATGTGCGATGGGTGCTGGTACT-TGCCCTTATATTGGCCCCT-TATCCCTCATCAA
* *
20223465 ACCTC-AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCG
128 ACCTCGAA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCA
20223529 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
192 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
20223594 TAGCTGAATTTTTTTGTGCATGCCAATAAAAATAC
257 TAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
20223629 GAGGATCATG
Statistics
Matches: 264, Mismatches: 22, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
290 6 0.02
291 139 0.53
292 109 0.41
293 10 0.04
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.30
Consensus pattern (292 bp):
AGCATCACCGGAGAACCTGACCAGCCGCATTGGGGTTCCGGTGATGGGGGGGCCGAGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGCCCTTATATTGGCCCCTTATCCCTCATCAAACC
TCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTATGCATGCCAACAAAAATACA
Found at i:20224151 original size:26 final size:26
Alignment explanation
Indices: 20224100--20224153 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
20224090 GTTGACTTAG
* *
20224100 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTACTAGGCTAA
* *
20224126 GCATATGGAGTTCATTAGTAGGCTAA
1 GCATACGGAGTTCATTACTAGGCTAA
20224152 GC
1 GC
20224154 TCGGACCAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACTAGGCTAA
Found at i:20227171 original size:876 final size:875
Alignment explanation
Indices: 20223338--20228471 Score: 6135
Period size: 876 Copynumber: 5.8 Consensus size: 875
20223328 CCAAAATACA
*
20223338 AGCATCGCCGGAGAACCTGACCAGCCGCATTGGGGTTCCGGTGATCGGGGGGGCC-AGGGGGTGT
1 AGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGTGATC-GGGGGGCCGAGGGGGTGT
* * *
20223402 GCGCACATGATGTGTGATGGGTGTTGGTACTAT--CCCTTATATTGGCCCTCTATCCCTCATCAA
65 GCGCACATGATGTGCGATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
20223465 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGT
129 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
20223530 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
194 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * *
20223595 AGCTGAATTTTTTTGTGCATGCCAATAAAAATACGAGGATCATGTCTACCAAGTTTGGGACCAAA
259 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAA
* * *
20223660 ACTCCTTCCAAAAAAATTTTAAAAAATCCCCAACCGTAAAAAGTTTTAAAAATCATAAAAAATAG
324 ACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAG
** * *
20223725 AAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTAGAA
389 AAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
20223789 GCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATC
454 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
20223854 GATCCACGACTTGCGCATCCCGTTTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTCCGCCCGTCC
519 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCCC-T--
* * * *
20223919 GCTTGTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-GAACCG
580 --TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCG
* * ** * * * * * * * * *
20223983 AGGGTTGTGGCAGCAGGATTGGTAGCATGCA-AAGGGGACCCGGCCGATTCTCGGGTTACACATC
642 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATC
* * *
20224047 CTGCCCCTTTGG-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
707 CCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
* *
20224111 TCATTCCTAGTCTAAGCATATGGAGTTCATTAGTAGGCTAAGCTCGGACCAGACCGAGGGTTG-T
771 TCATTCCCAGTCT----A-A--GA--TC-------GG---A--TC-G----GACCGAGGGTTGCA
* * * * * *
20224175 GACAGAACATTCTGAGCTC-AGGCATGTACTGGTGCCGCATTTTTCTTCGTCAGGGCACCATTGC
810 G-CAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
*
20224239 CAG
873 CGG
* * * * * * *
20224242 AGTATCGTCGGAGAACCTGACCAGCGGCAATGAGGTTTCGATGATCGGGGGGCCGGGGGGGGAGT
1 AGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGTGATCGGGGGGCC--GAGGGG-GT
* * * *
20224307 GTGTGCTCATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCTCTATCCCTCATCA
63 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
20224372 AACCTCAAGAACTAAGACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCA
128 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
20224437 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
193 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
20224502 TGGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAA
258 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAA
* * * * *
20224567 AACTCCTCTAAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCCAAAATCATGAAAAATA
323 AACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATA
* * * * *
20224632 AAAAACGAGTCGTCTGGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTCTATGAATTTACA
388 GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
20224697 AGCCATAAAAATTGCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTGCCACCCTAT
453 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
20224762 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGTCCG--C-TC
518 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCCCTTC
* * * * *
20224824 GTTTCGTCGGGTGGCTTAGGCATATGCAGTTCATTCCCAGTCTCAGATCGGACCAGACCAAGGGT
582 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
** * * *
20224889 TGCGGCAGCAGGATCGGTAGCACGTAGAGGGAGACCCGATCGATCCCCAGCTTGCGCATCCCGCC
647 TGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCC
* * ** * * *
20224954 CCTCCGGCCGATTAATCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
712 CCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
* * * * * *
20225019 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCACACGCTGGGCTC-AGGCATTTGTTGG
777 CCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGA-GCATGTGCTGG
* * *
20225083 TGTCGCATTTTTTTTCGTCGGGGCACCACCGCCGG
841 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * *
20225118 AGCATCACCGGAGAACCTGATC-GACGGCATTGGGGTTTCGGTGATCGGGGGGCCGGGGGGGTGT
1 AGCATCGCCGGAGAACCTGACCAG-CGGCATTGGGGTTCCGGTGATCGGGGGGCCGAGGGGGTGT
* * *
20225182 GCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCACCAAA
65 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
20225247 CCTCAAGAACTCACACCTCCTTAAAGAGCAGTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
130 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
20225312 AAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTAAACTTCGAG-TTTTA
195 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * * *
20225376 GCTGAATTGTTTTGAGCATGCCAACAAAAATAAAAGGATC-CAATCTAACAAGTTTGGGGCGAAA
260 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC-GTCTAACAAGTTTGGGGCCAAA
* * * *
20225440 ACTCC-TTCTGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCCTAAAAAATA
324 ACTCCTTTC-AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATA
* *** * *
20225504 GAAAACAAGTTGTCTTGCCATGAAACTTGTTGTGAAGGCTTAAGGGAACATTGTATGCATTTACA
388 GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** *
20225569 AGCCATAAAAATGGCATTGG-TGGACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTA
453 AGCCATAAAAATGGCATTGGCACG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
20225633 TCGATCCACGGCTTGCGAATCCCATCTCTCTGGCTGGCATAGTGCCCGCCCG--C-CCG---TTC
517 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCTTC
* * * * *
20225692 GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCTGACCGAAGGT
582 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * * *
20225757 TGCGGTAGCAGGATCAACAGCAAGCAGAGGGGGACCCGATCGATCCCCAGCTT-CTGCATCTCAC
647 TGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGC-GCATCCCGC
* * * * *
20225821 CCCTCTGGCCGGCTTAGCGCCTGCACCCTCGTTTCGTGGGTTGACTTAGGCATACACAGTTCATT
711 CCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
* * * * * *
20225886 CCCAGTCTAAGATCAGACCGGACCAAGGGTTGCCGCAGCACATGCTAGGCTCGGGCATGTGCTGG
776 CCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGG
* ** *
20225951 TGCCGTATTTTTCTTCACCGGGGCACCATCACCGG
841 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* ** * ** *
20225986 AGCATCGTCGGAGAACCTGACTGGCGGCATTAGGGTTCCGACGATCGAGGGGGCCCA--GGGTGT
1 AGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGTGATCG-GGGGGCCGAGGGGGTGT
* **
20226049 GCGCACATGATGTGCGATGGGTGCT-GTAACTTAGCCCTTATATTGGCCCCCTATCTTTCA-CAA
65 GCGCACATGATGTGCGATGGGTGCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-A
** *
20226112 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCA
128 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
20226177 TTAAAGTGTCTGAAATGGGGACATTTTTTTCAAAGGGTCACAAAATCTTGTTCACTTCGAGCTTT
193 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
20226242 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGCGTTTAAAAAGTTTGGGGCCAA
258 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAA
** * * * *
20226307 AACTCCTTTCAAAAAAATTTTAAAAAATCAAGAACCGCAAAAAGTTTCTAAAATCGTGAAAAATA
323 AACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATA
* * *
20226372 GAAAACGAGTCGTTTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
388 GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
20226437 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTCCCACTCTAT
453 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* ** *
20226502 CGATCTC-CGGCTTGTGCATCCCGTCTCTCTGGTTGGCGTAGTGCCCGCCCGCCCGCCTGCCCTT
518 CGATC-CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC-GCCC-T
* * * *
20226566 TCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCGGACCAGACTGAGG
580 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * *** *
20226631 GTTGCGACAGCAGGATCGACAGCTCGCAGAGGGGGACCCGACCGATCCTTTGCTT-CGCATCTCG
645 GTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCG
* * *
20226695 CCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCAT
710 CCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
* *
20226760 TCCCAGTCTAAGATCGGATTGGACCGAGGGTTACAGCAGCACATGCTGGGCTCGAGCATGTGCTG
775 TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTG
* *
20226825 GTGCTGCATTTTTCTTCGTCGGGGCACCACCGCCGG
840 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * * *
20226861 AGCTTCGCCGAAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGT
1 AGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGTGATC-GGGGGGCCGAGGGGGTGT
* * * * *
20226926 GCACAAATGATGTGCGATGGGTGTTGATACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAA
65 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
20226991 CCTCGAGAACTCACA-CCCCTTATAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATT
130 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * * * *
20227055 AAAATGTTTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATTTTGTACATTTTGAGTTTTTA
195 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * *
20227120 GCTGAATTTTTTTGGGCATGCCAAAAAAAATAAAAGTACCACGTCTAAAAAGTTTGGGGCCAAAA
260 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAA
* * * * * *
20227185 CTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
325 CTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGA
20227250 AAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
390 AAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
20227315 CCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAATCCCACCTACCACCCTATCG
455 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
20227380 ATCCATGACTTGCGCATTCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCTAC-CCGCCCACTC
520 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC--CGCCGCCC-TTC
* * * * * *
20227443 GTTTCGTTGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGTCCGGACAGAGGGT
582 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * * *
20227508 TGTGGCAGCAAGATCGGCAGCACGTAGAGGGGGACTCGACCGATCCCC-GACTTGCGCATCCCAC
647 TGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAG-CTTGCGCATCCCGC
* *
20227572 CCCTCTGG-TCCGCTGAGCACCCGCACGCTCGTTTCGTGTGGTTGACTTAGGCATACAGAGTTCA
711 CCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTG-GGTTGACTTAGGCATACAGAGTTCA
* *
20227636 TTCCCAGTCTAAGCATACAGATTTCATTTCCATTCTAAGATCGGATCAGACCAAGGGTTGCGGCA
774 TTCCCAGTCTAAG-AT-C-G------------------GATC-G----GACCGAGGGTTGCAGCA
* * * *
20227701 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGG
813 GCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * * * *
20227764 AGCATCGCCAGAGAACCTGACTAACAGCATTGGGGTTCTGGTGATCGGGGGGTCG-GGGGGTGTG
1 AGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGAGGGGGTGTG
* * *
20227828 CGCACATGATGTGGGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAAC
66 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
20227893 CAT-GAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
131 C-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
20227957 AAAGTGTTTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCAAGTTTTTA
195 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * *
20228022 GCTGAATTTATTTT-TTCACGCCAAGAAAAATACAA-GATCACGTCTACCAAGTATGGGGCCAAA
260 GCTGAATTT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAA
* * **
20228085 ACTCC-TTCTGAAAAAATTTTGAAAAATCAGGAACCGTAAAAAGTTTCAAAAATCATAAAAAATA
324 ACTCCTTTC-AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATA
*
20228149 GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACA
388 GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
20228214 AGCCATAAAAGTGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
453 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * * * * * *
20228279 CAATCTACGGCTTACGCATCCCATTTCTTTGACCGACATAGTGCCCACCCGTCCGCCCGCCCGCT
518 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCG-CC-CT
* *
20228344 T-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCAAG
580 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAG
* * * * * *
20228407 GGTTACGGCAGTAGGATCGACAGCACGTAGAGGGGGACCCGGCTGATCCCC-GACTTACGCATCC
644 GGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAG-CTTGCGCATCC
20228471 C
708 C
20228472 TCATCAAACC
Statistics
Matches: 3668, Mismatches: 479, Indels: 168
0.85 0.11 0.04
Matches are distributed among these distances:
866 3 0.00
867 176 0.05
868 562 0.15
869 14 0.00
870 2 0.00
871 5 0.00
872 267 0.07
873 179 0.05
874 7 0.00
875 310 0.08
876 637 0.17
877 111 0.03
878 4 0.00
879 1 0.00
880 2 0.00
881 1 0.00
883 1 0.00
886 1 0.00
893 2 0.00
895 2 0.00
897 1 0.00
898 4 0.00
899 1 0.00
900 3 0.00
901 393 0.11
902 342 0.09
903 124 0.03
904 40 0.01
906 5 0.00
907 31 0.01
908 306 0.08
909 131 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
AGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGAGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAC
TCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAA
AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCTTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTC
TGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
TCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG
CATTTTTCTTCGTCGGGGCACCATCGCCGG
Found at i:20227661 original size:26 final size:26
Alignment explanation
Indices: 20227622--20227674 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20227612 GTTGACTTAG
20227622 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
20227648 GCATACAGATTTCATTTCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20227674 G
1 G
20227675 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20228135 original size:901 final size:904
Alignment explanation
Indices: 20226745--20228471 Score: 2509
Period size: 901 Copynumber: 1.9 Consensus size: 904
20226735 GTTGACTTAG
* ** *
20226745 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACAGCAGCACATGCTGGG
** * *
20226810 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCACCGCCGGAGCTTCGCCGAAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCACCGCCGGAGCATCGCCGAAGA
**
20226875 ACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCACAAATGATGTG
131 ACCTGACCAACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCACAAATGATGTG
* * *
20226940 CGATGGGTGTTGATACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGAGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
20227005 ACCCCTTATAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATG
261 ACCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATG
* * * **
20227070 GGGACACTTTTTTCAAAGGGTCACAAAATTTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGG
326 GGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGG
* * *
20227135 GCATGCCAAAAAAAATAAAAGTACCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAGAA
391 GCACGCCAAAAAAAATAAAAGTACCACGTCTAAAAAGTATGGGGCCAAAACTCCTTCCGAAAAAA
* * *
20227200 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
456 TTTTAAAAAATCACGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACAAGTCGTCTTG
20227265 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
20227330 TGGCATGCAGAAAAATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCATGACTTGCGC
586 TGGCACGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTACGC
* * * * * *
20227395 ATTCCGTCTCTCTGGCCGACGTAGTGCCC-GCCG-CCTACCCGCCCACTCGTTTCGTTGGTTGGA
651 ATCCCATCTCTCTGACCGACATAGTGCCCACCCGTCC-ACCCGCCCACTCGTTTCGTCGGTTGGA
* ** * **
20227458 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGTCCGGA-CAGAGGGTTGTGGCAGCAAGAT
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCA-AGGGTTACGGCAGCAAGAT
* * *
20227522 CGGCAGCACGTAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGTCCGCTG
779 CGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCACCCCTCTGGTCCGCTG
20227587 AGCACCCGCACGCTCGTTTCGTGTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
844 AGCACCCGCACGCTCGTTTCGTGTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
20227648 GCATACAGATTTCATTTCCATTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACAGCAGCACATGCTGGG
* * *
20227713 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCC-AGAG
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCACCGCCGGAGCATCGCCGA-AG
* * * * * *
20227777 AACCTGACTAACAGCATTGGGGTTCTGGTGATC-GGGGGGTCG-GGGGGTGTGCGCACATGATGT
130 AACCTGACCAACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCACAAATGATGT
* * *
20227840 GGGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCAT-GAGAACTC
195 GCGATGGGAGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
* * *
20227904 ACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
259 ACA-CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAA
20227969 ATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTATT
323 ATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT-TT
** * * * ** *
20228034 TT-TTCACGCCAAGAAAAATACAAG-ATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCTGAA
387 TTGGGCACGCCAAAAAAAATAAAAGTACCACGTCTAAAAAGTATGGGGCCAAAACTCCTTCCGAA
* * *
20228097 AAAATTTTGAAAAATCAGGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACAAGTCGT
452 AAAATTTTAAAAAATCACGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACAAGTCGT
* *
20228162 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAGTG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
20228227 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCTACGGCTT
582 GCATTGGCACGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTT
* * * * *
20228292 ACGCATCCCATTTCTTTGACCGACATAGTGCCCACCCGTCCGCCCGCCCGCTTGTTTCGTCGGTT
647 ACGCATCCCATCTCTCTGACCGACATAGTGCCCACCCGTCCACCCGCCCACTCGTTTCGTCGGTT
* * *
20228357 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCAAGGGTTACGGCAGTAGG
712 GGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCAAGGGTTACGGCAGCAAG
* *
20228422 ATCGACAGCACGTAGAGGGGGACCCGGCTGATCCCCGACTTACGCATCCC
777 ATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCC
20228472 TCATCAAACC
Statistics
Matches: 725, Mismatches: 92, Indels: 15
0.87 0.11 0.02
Matches are distributed among these distances:
901 316 0.44
902 262 0.36
903 147 0.20
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (904 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACAGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCACCGCCGGAGCATCGCCGAAGA
ACCTGACCAACAGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCACAAATGATGTG
CGATGGGAGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATG
GGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGG
GCACGCCAAAAAAAATAAAAGTACCACGTCTAAAAAGTATGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCACGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACAAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTACGC
ATCCCATCTCTCTGACCGACATAGTGCCCACCCGTCCACCCGCCCACTCGTTTCGTCGGTTGGAT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCAAGGGTTACGGCAGCAAGATCG
ACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCACCCCTCTGGTCCGCTGAG
CACCCGCACGCTCGTTTCGTGTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:20229013 original size:588 final size:588
Alignment explanation
Indices: 20227879--20229036 Score: 1707
Period size: 588 Copynumber: 2.0 Consensus size: 588
20227869 TTGGCCCCCT
* *
20227879 ATCCCTCTTCAAACCATGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCATGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
20227944 GCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACA
* *
20228009 CTTCAAGTTTTTAGCTGAATTTATTTTTTCACGCCAAGAAAAATACAAGATCACGTCTACCAAGT
131 CTTCAAGTTTTTAGCTGAATTTATTTTTGCACGCCAACAAAAATACAAGATCACGTCTACCAAGT
* * *
20228074 ATGGGGCCAAAACTCCTTCTGAAAAAATTTTGAAAAATCAGGAACCGTAAAAAGTTTCAAAAATC
196 ATGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACCATAAAAAGTTTCAAAAATC
* * *
20228139 ATAAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTA
261 ATAAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTA
* *
20228204 TGAATTTACAAGCCATAAAAGTGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
326 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
20228269 ACCACCCTATCAATCTACGGCTTACGCATCCCATTTCTTTGACCGACATAGTGCCCACCCGTCCG
391 ACCACCCTATCAATCCACGGCTTACGCATCCCATCTCTCTGACCGACATACTGCCCACCCGTCCA
* * * * * *
20228334 CCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACA
456 CCCGCCCGCTCGTTTCATCGATTGGCTTAAGCATACGCAGTTCATTCCCAGTCTAAGATAGAACA
* * * *
20228399 GGACCAAGGGTTACGGCAGTAGGATCGACAGCACGTAGAGGGGGACCCGGCTGATCCCCGACTTA
521 GGACCAAGGGTTACAGCAGCAGGATCGACAGCACGCAGAAGGGGACCCGGCTGATCCCCGACTTA
20228464 CGC
586 CGC
20228467 ATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 ATCCCTCATCAAACCAT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
20228531 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACCAAATCTTGTAC
65 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTAC
* *
20228596 ACTTCAAGTTTTTAGCTGAATTT-TTTTATGCATGCCAACCAAAATACAAGGATCACGTCTACCA
130 ACTTCAAGTTTTTAGCTGAATTTATTTT-TGCACGCCAACAAAAATACAA-GATCACGTCTACCA
* * *
20228660 AGT-TTGGGCCAGAACTCCTTC-GAAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAA
193 AGTATGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAATCACGAACCATAAAAAGTTTCAAA
* * * **
20228723 AATCGTGAAAACTAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCAT
257 AATCATAAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCAT
* * *
20228788 TGTATGAATTTTCAAGCCATAAAAATGGCATTGGGATGCAGAAATATGAAGATGTGCCTAAACCC
322 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * * *
20228853 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTACTGCCCGCCCG
387 ACCTACCACCCTATCAATCCACGGCTTACGCATCCCATCTCTCTGACCGACATACTGCCCACCCG
*
20228918 -CCTACCTGCCCGCTCGTTTCATCGATTGGCTTAAGCATACGCAGTTCATTCCCAGTCTAAGATT
452 TCC-ACCCGCCCGCTCGTTTCATCGATTGGCTTAAGCATACGCAGTTCATTCCCAGTCTAAGA-T
* * * * *
20228982 AG-TCTGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGG
515 AGAACAGGACCAAGGGTTACAGCAGCAGGATCGACAGCACGCAGAAGGGGACCCGG
20229037 TCGATCGCTA
Statistics
Matches: 507, Mismatches: 57, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
587 8 0.02
588 480 0.95
589 19 0.04
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.25
Consensus pattern (588 bp):
ATCCCTCATCAAACCATGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACA
CTTCAAGTTTTTAGCTGAATTTATTTTTGCACGCCAACAAAAATACAAGATCACGTCTACCAAGT
ATGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACCATAAAAAGTTTCAAAAATC
ATAAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCAATCCACGGCTTACGCATCCCATCTCTCTGACCGACATACTGCCCACCCGTCCA
CCCGCCCGCTCGTTTCATCGATTGGCTTAAGCATACGCAGTTCATTCCCAGTCTAAGATAGAACA
GGACCAAGGGTTACAGCAGCAGGATCGACAGCACGCAGAAGGGGACCCGGCTGATCCCCGACTTA
CGC
Found at i:20230876 original size:26 final size:26
Alignment explanation
Indices: 20230840--20230892 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20230830 GTTGACTTAG
20230840 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20230866 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20230892 G
1 G
20230893 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20231793 original size:26 final size:26
Alignment explanation
Indices: 20231743--20231795 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20231733 GATGGCTTAG
** *
20231743 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20231769 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20231795 G
1 G
20231796 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20232231 original size:889 final size:888
Alignment explanation
Indices: 20229968--20233451 Score: 4579
Period size: 889 Copynumber: 3.9 Consensus size: 888
20229958 GTTGACTTAG
*
20229968 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* ** *
20230033 CTCGGGCAT-TGCTGGTGCCGTATTTTTCTTCGTCGGGCCACCATCACCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT--CC-G-G-ATCG--G-AGA
* * * * * **
20230097 ACCTGATCGGCAGCATTGGGGTTCCGACGATCGAGAGGGCCGGGGGGTGTGTGCACATGATGTGC
123 ACCTGACCGACGGCATTGGGGTTTCGACGATCG-GGGGGCCGGGGGGTGTGCACACATGATGTGC
* *
20230162 GATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCTATCCCTCATC-AACCTCAAGAACTCACAC
187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCCCATCAAACCTCAAGAACTCACA-
*
20230226 CCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
251 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-G
* * *
20230291 GGACACTTTTTTCCAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTG
315 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATG
* * * *
20230356 CATGCAAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAGAAAAT
379 CATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** * * * *
20230421 TTTAAAAATTCTTGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAAAAAATGAGTCGTCTTCC
444 TTTAAAAAATC-CAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
20230486 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AGCCATAAAAATGGAATT
508 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATT
* * * *
20230550 GGAACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACAGGTTGCACA
573 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
* * * *
20230615 TCCCGTCTCTCTGGCTGACGTAGTGCCCATC-CATCCACCCGCCCGCTCGTTTCGTCGGTTAGG-
638 TCCCGTCTCTCTGGCCGACATAGTGCCCGTCGC--CCACCCGCTCGCTCGTTTCGTCGGTT-GGC
*
20230678 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGGCGA-AGC-GAAT
700 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-GCGATAGCAGGAT
* * * * * *
20230741 CGACAGGACGCAGAGGGGGACCCAGTCAATCCTCGGCTTACGCATCTTGCCCCTTTGGCCGGCTG
764 CGGCAGCACGCAGAGGGGGACCCAGTCAATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
* *
20230806 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
829 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
20230866 GCATACTGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
20230931 CTTGAGCATGTGCTGGTGTCGTATTTTTGTTCACCGGGGTACCATCGCCGAAGGATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT--CC---GGA-T--CGGAGA
* * *
20230996 ACTTGACCGACGGCATT-GGGTTTCCAGCGATCGGGGGGGCCGAGGGGGTATGCACACATGATGT
123 ACCTGACCGACGGCATTGGGGTTTCGA-CGATC-GGGGGGCCG-GGGGGTGTGCACACATGATGT
* * *
20231060 GCAATGGGTGTTGGTACTTGGCCCTTATATTGGCTCCCTATCCCCCATCAAACCTCGAGAACTCA
185 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCCCATCAAACCTCAAGAACTCA
* * *
20231125 CACCCTCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAGGTGTCTGAAA
249 CACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20231190 TGGGAGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTA
313 TGGGA-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTA
* ** * *
20231255 GCGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTTTGGCCAAAAATCCTTTCGAAAA
377 -TGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
20231320 AATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
441 AATTTTAAAAAATCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
20231385 GCCCTAAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
506 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAA
** * *
20231450 TTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCAAAGCTTGCG
571 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* * * * *
20231515 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCGGCCCACCCGCTTGCTCGTTTCATTGGTTGGC
636 CATCCCGTCTCTCTGGCCGACATAGTGCCCGTC-GCCCACCCGCTCGCTCGTTTCGTCGGTTGGC
* * * *
20231580 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACGGAGGGTTGCGATAACAGGATC
700 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATC
* * * *
20231645 GGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGTTGA
765 GGCAGCACGCAGAGGGGGACCCAGTCAATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGA
* * **
20231710 GCGCCCGCACGCTCGTTTCGTGGGATGGCTTAGGCATACGGAGTTCATTTTCAGTCTAA
830 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
20231769 GCATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACCGAGGGTGGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
20231834 CTCGGGCATTTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT-C-G-TCGGAGAACCTAACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCGGATCGGAGAACCTGACC
* *
20231896 GACGGTATTGGGGTTTCGGCGATCGGGGGGCC-GGGGGTGTGCACACATGATGTGCGATGGGTGC
131 GACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGC
* * *
20231960 TGGTACTTGGCTCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAA
196 TGGTACTTGGCCCTTATATTGGCCCC-TATCCCCCATCAAACCTCAAGAACTCACA-CCCCTTAA
* *
20232025 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACTCTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTT
* *
20232090 TTTTCAAATGGTCACAAAATCTTGAACACTTCAAGTTTTTAGCTGAATTTTTTATGCATGCTAAC
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGCATGCTAAC
* * * *
20232155 AATATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAA
388 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* ** * *
20232220 TCTCAAACCGTAAAAATTTTTGAAAATCGTGAAAGATAGAAAACGAATCGTCTTGCCATGAAACT
453 TC-CAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * ** *
20232285 TCACGTGAAGGCTTAAGGGACCATTTTATGAAATTACAAGCCATAAAAATGGAATTGGCATGCTG
517 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACACAG
* * * ** *
20232350 AAATGTTAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCATGGCATGCGCATCCCGTCTC
582 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
* * ** * * *
20232415 TCTGGCCGACATAGTGCCCGCCTGCCCGCTTGCTCGCTCATTTCGTCAGTTGGCATAGGCATACG
647 TCTGGCCGACATAGTGCCCGTC-GCCCACCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * ** * *
20232480 GAGTTCATTCCCAGTCTAAGATCGGACCATACCAAGGGTTGCGGTAGCAACATTGGCAGCACGTA
711 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGGCAGCACGCA
* * *
20232545 GAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCACGCCCCTCTGGCCGGCTGAGCGCCCGTACG
776 GAGGGGGACCCAGTCAATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
**
20232610 CTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
841 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
20232658 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGATTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
20232723 CTCGGGCATGTGCTGGTGCTGCATTTGTCTTCATCGGGGCACCAT-C-G-CCGGAGAACCTGACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCGGATCGGAGAACCTGACC
* * *
20232785 -AGCGACATTGGGGTTTCGACGATTGGGCGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
131 GA-CGGCATTGGGGTTTCGACGATCGGG-GGGCCGGGGGGTGTGCACACATGATGTGCGATGGGT
*
20232849 GCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCTCCTT
194 GCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCCCATCAAACCTCAAGAACTCACACC-CCTT
20232914 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGACAC
*
20232979 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATGTTTTTCGTGCATGC
321 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTT-ATGCATGC
* * * * ** * *
20233043 CAACAAAAATTC-AGCGATCACGTCAACCAGGTTTGGGGCCAAAACTAGTTCTGAAAAAATTTTC
384 TAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
20233107 AAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
448 AAAAATCCA-AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
20233172 AAACTTCATGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCA
512 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCA
* *
20233237 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGCATCCC
577 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
* * * * * * * *
20233302 ATTTCTTTGACCGACATAATG-CC--CG----CCCGCCCGCTCGTTTCGTTGGTTGGGTTAGGCA
642 GTCTCTCTGGCCGACATAGTGCCCGTCGCCCACCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * ** *
20233360 TACGGAGTTCATTCCCAGTTTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGTAGCA
707 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGGCAGCA
*
20233425 AGCAGAGGGGGACCCAGTCAATCCCCG
772 CGCAGAGGGGGACCCAGTCAATCCCCG
20233452 ACTTATGCAT
Statistics
Matches: 2276, Mismatches: 275, Indels: 84
0.86 0.10 0.03
Matches are distributed among these distances:
884 102 0.04
888 74 0.03
889 705 0.31
890 16 0.01
891 207 0.09
892 277 0.12
893 7 0.00
894 1 0.00
896 1 0.00
898 75 0.03
899 61 0.03
900 54 0.02
901 123 0.05
902 365 0.16
903 207 0.09
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCGGATCGGAGAACCTGACC
GACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGCATGCTAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACACAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTG
GCCGACATAGTGCCCGTCGCCCACCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGG
GGACCCAGTCAATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20233605 original size:171 final size:171
Alignment explanation
Indices: 20233321--20233650 Score: 419
Period size: 171 Copynumber: 1.9 Consensus size: 171
20233311 ACCGACATAA
* * * * *
20233321 TGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGGTTAGGCATACGGAGTTCATTCCCAGTTTAAGAT
1 TGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** ** ** *
20233386 CAGACCGGACTGAGGGTTACGGCAGCAGGATCGGTAGCAAGCAGAGGGGGACCC-AGTCAATCCC
66 CAGACAAGACCAAGGGTTACGGCAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACT-AATCCC
*
20233450 CGACTTATGCATCCCACCCATCTGACCGACGTAGTGCCCGCC
130 CGACTTACGCATCCCACCCATCTGACCGACGTAGTGCCCGCC
*
20233492 TGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
1 TGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * *
20233557 CAGACAAGACCAAGGGTTGTGGCAGTAGGATTGACAGCACGTAGAGGGGGACCCGACTAATCCCC
66 CAGACAAGACCAAGGGTTACGGCAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACTAATCCCC
* * * * *
20233622 GGCTTGCGCATCCTACCCCTCTGGCCGAC
131 GACTTACGCATCCCACCCATCTGACCGAC
20233651 TGAGCGCCCG
Statistics
Matches: 133, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
171 131 0.98
172 2 0.02
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.21
Consensus pattern (171 bp):
TGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACAAGACCAAGGGTTACGGCAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACTAATCCCC
GACTTACGCATCCCACCCATCTGACCGACGTAGTGCCCGCC
Found at i:20234617 original size:26 final size:26
Alignment explanation
Indices: 20234587--20234637 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20234577 GTTGACTTAG
*
20234587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20234613 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
20234638 GCCGGCGTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20234880 original size:26 final size:26
Alignment explanation
Indices: 20234851--20234903 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20234841 GTTGACTTAG
20234851 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20234877 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20234903 G
1 G
20234904 ATCGGATGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20234890 original size:264 final size:260
Alignment explanation
Indices: 20234406--20234901 Score: 654
Period size: 260 Copynumber: 1.9 Consensus size: 260
20234396 CTCCCGCACT
*
20234406 CTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
1 CTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAG
* * * * *
20234471 GGATGCGGCAGCAGCATCGACAGCACGTAGAGAGGGACCCGGTCGATCCCCGGCTTACGCATCCC
66 GGATGCGGCAGCAGCATCGACAGCACATAGAGAGGGACCCAGCCGATACCCGACTTACGCATCCC
*** * *
20234536 GTGCCTCTAGCCGGTTGACCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
131 ACCCCTCTAGCCGGCTGACCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCA
20234601 TTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAGCCGGCGTAGTGCTCGCCCGCCCGTCTG
196 TTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAGCCGGCGTAGTGCTCGCCCGCCCGTCTG
* * *
20234666 CTCATTTCGTC-AGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGATCGGACTGA
1 CTCATTTCATCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGA
* * * * * ** *
20234730 GGGTTGTGGTAGCAGGATC-AGCAGCACATAGAGGGGGACCCAGCCGATACTTGACTTGTGCATG
65 GGGATGCGGCAGCAGCATCGA-CAGCACATAGAGAGGGACCCAGCCGATACCCGAC-T-T--ACG
* * * * * * *
20234794 CATGCCACCCCTCTGGCCGGCTGAGCGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGA
125 CATCCCACCCCTCTAGCCGGCTGACCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
*
20234859 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
190 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
20234902 AGATCGGATG
Statistics
Matches: 200, Mismatches: 30, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
259 2 0.01
260 99 0.50
261 1 0.00
262 1 0.00
264 97 0.49
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.24
Consensus pattern (260 bp):
CTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAG
GGATGCGGCAGCAGCATCGACAGCACATAGAGAGGGACCCAGCCGATACCCGACTTACGCATCCC
ACCCCTCTAGCCGGCTGACCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCA
TTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAGCCGGCGTAGTGCTCGCCCGCCCGTCTG
Found at i:20237581 original size:26 final size:26
Alignment explanation
Indices: 20237545--20237594 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20237535 GACTTAGGCA
*
20237545 TACGGAGTTCATTCTCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
20237571 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20237595 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:20238999 original size:896 final size:896
Alignment explanation
Indices: 20234638--20240876 Score: 7656
Period size: 909 Copynumber: 7.0 Consensus size: 896
20234628 TCCCAGTCTA
* ** * ** * *
20234638 GCCGGCGTAGTGCTCGCCCGCCCGTCTGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
1 GCCGGCGTAGTGCCCGCCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
* * * * * * **
20234703 TCCCATTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGGATCAGCAGCACATAGAGGGGGA
66 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-GAAGCACGCAGAGGGGGA
* * * * * * *
20234768 CCC-AGCCGATACTTGACTTGTGCATGCATGCCACCCCTCTGGCCGGCTGAGCG-CCTGCATGCT
130 CCCGA-CCGATCCCTGGC-T-T--ACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCT-CACGCT
* *
20234831 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
189 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCC
** * *
20234896 AGTCTAAGATCGGA-TGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
254 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
* ** * * * *
20234960 CGCATTTTTCTTCCCCGGGGCACCATCG-CTGGAGCATCATCGGAGAACTTGACCGGCGGCATTG
319 CGTATTTTTCTTCGTCAGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGACCGACGGCATTG
* * *
20235024 GGGTTTCGACGATCGGGGGGGCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
383 GGGTTCCGACGATC-GGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
20235089 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
447 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
20235154 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
512 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
20235219 GTCACAAAATCTTGTGCACTTCGTGTTTTTAGCTGAATTTTTTTATGCAAGCCAAAAAAAATACA
577 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
** * * *
20235284 AGGATCACGTCTACCAAGTTTGGTACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACC
642 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACC
* * * * * *
20235349 GCAAAAAGTTTGAAAAAT-TGTGACAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTAA
707 GTAAAAAGTTTCAAAAATCAG-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
20235413 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGA
771 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGA
* * *
20235478 AGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTACGCATCCCGTCTCTCTA
836 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* ** * *
20235539 GCCGGTGTAGTGCCCGCCCGCCCGCCCGCATGCCCGCACGCTCATTTCGTCGATCGGCTTAGGCA
1 GCCGGCGTAGT----GCCCGCCCG-CC-CA----C-C-CGCTTGTTTCGTCGGTTGGCTTAGGCA
* * *
20235604 TACAGAGTTCATTCCCAATCTAAGAT-TGAACCGGACCGAGGGTTGCGGCAGCAGGATGGACAGC
54 TACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGA-AGC
* * * * * ***
20235668 ACGTAGAGGGGGACTCGACCGATCCCCGGCTTGCCCATCCCATGCCTCTGGCCGGCTGAGCGCCC
117 ACGCAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
20235733 GT-ATGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-AGAG
182 -TCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AG
* * * * * * * * * * *
20235796 TTCATTCCTATTCTATGATCAGACCAAATCGAGGGTTGCAGTAGCACATGTTGGGCTTGGGCATT
245 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * **
20235861 TGCTGGTGCCGTATTTTTCTTCGCCAAGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGA
310 TGCTGGTGTCGTATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGA
* * **
20235926 CGGCATTGGGGTTCCGATGATCGGGGGGTTGGGGCATGTGCGCACATGATGTGCGATGGGTGCTG
375 CGGCATTGGGGTTCCGACGATCGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
20235991 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
439 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * *
20236056 AGCATTTGAGATTTTACGGGCTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACATTTTT
504 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
20236121 TTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTGAATTTTTTTATGCATGCCAACA
569 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
20236186 AAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
634 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* ** *
20236250 CCCGAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGCAACTT
699 CTCGAACCGTAAAAAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
20236315 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACA-CAG
764 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAG
* * * *
20236379 AAATATGAAGATGTGCCGAAAGCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCGTCTC
828 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
20236444 TCTG
893 TCTG
* * * * *
20236448 GCCGACGTA--G--CGCCCACCCACCCACTCGTTTCATCGGTTGGCTTAGGCATACGCATACGGA
1 GCCGGCGTAGTGCCCGCCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTAGGCATA--C--A--GA
* * * *
20236509 GTGCATTCCTAGTCAAATATCAGACCGGACCGAGGGTT-----A-C--GA-C--AGCACGCAGAG
60 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAAGCACGCAGAG
* * * * **
20236563 GGGGACTCGGCCAATCCCTGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCGACACGCTC
125 GGGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTC
*
20236628 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
190 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
* * * * * *
20236693 GTCCACGATCGTACCGGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
255 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
** * *
20236758 GTATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCGA-TGGAGAACCTAACCGACGGCATTGG
320 GTATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATC-ACCGGAGAACCTGACCGACGGCATTGG
*
20236822 GGTTCC-AGCGATCGGGAGGGTCTGGGGGTGTGCGCACATGATGTGC-AGTGGGTGCTGGTACTT
384 GGTTCCGA-CGATCGGG-GGG-CGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTT
* * * *
20236885 GGCCCTTACATTGGCACCCTATCCCTCATCAAACTTCAAGAACTCACACCCCCTTAAAGAGCATT
445 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
20236950 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAA
510 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
20237015 GGGTCACAAAATGTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATA
575 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * *
20237080 CAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAAT-TCCAA
640 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT-CGA
* * * *
20237144 ACCGTAAAATGTTTCAAAAATTATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
704 ACCGTAAAAAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
20237209 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
769 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATAT
*
20237274 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTG
834 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
20237337 GCCAGCGTAGT----GCCCGCCCACCTGCTCGTTTCGTCGGTTGACTTAGGCATAC-GAAGTTCC
1 GCCGGCGTAGTGCCCGCCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCA
* * * * * * * * *
20237397 TTCCTAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCACGATCAGCAGAACGTAGAGGGTG
65 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-GAAGCACGCAGAGGGGG
* * * * * *
20237462 ACCTGACCGATCCCAGGCTTATGCATCCCGCCCCTCTGGTCGGCTGAGCTTCCC-CACGCTTGTT
129 ACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCCTCACGCTCGTT
* * *
20237526 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCGTACGGAGTTCATTCCCAGTC
193 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTC
* * * *
20237591 TAAGATTGGACCAGACCGAGGGTTGTGGCAGCACAGGCTGGGCTCGGGCATGTGCTGGTGTCGCA
258 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTA
** *
20237656 TTTTTCTTCACCAGGCCACCATCGTCGGAGCATCGGCAGAGCATCGCCGGAGAACCTGACCGACG
323 TTTTTCTTCGTCAGGGCACCATCGTCGGAGCAT--------CA---CCGGAGAACCTGACCGACG
** * * * *
20237721 GCATTGGGGTTCCGGTGGTCGAAGGGGGCCGGGCGGGGTGTGGGCACATAATGTGTGATGGGTGC
377 GCATTGGGGTTCCGACGATCG--GGGGG-C-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
20237786 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGATCTCAGACCCCCTAAA
437 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
20237851 AGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC-T
502 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
20237915 TTTTCATATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAG
567 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * * *
20237980 CAAAAATAGAAGGATCATGTGTACGAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAT
632 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * * *
20238045 ATC-CTAAATCGCAAAAAGTTTCAAAAAT-TGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
697 ATCTC-GAACCGTAAAAAGTTTCAAAAATCAG-GAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
20238108 ACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
760 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
* ** * *
20238173 CAGAAATATGAAGATGTGGCTAAACCCACCTACCGTCCTATTGATCCACGGCTTGCGCATCTCGT
825 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
20238238 CTCTCTG
890 CTCTCTG
* * * *
20238245 GCTGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACAGAGTCCAT
1 GCCGGCGTAGTGCCCGCCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
* ** * * * * *
20238310 TCCCAATCTAAGATCAGACCAAATCAAGGGTTGCAGTAGCAGGATCGATAGAACGCAGAGGGGGA
66 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-AGCACGCAGAGGGGGA
* * * * * *
20238375 CCCAACCGAT-CGTCGGCTTGCGGATCCCGCCTCTCT-GCCGGCTGAGAGCCCTCACGCTCGTTT
130 CCCGACCGATCCCT-GGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTT
** * * * * *
20238438 AATGGGTTCACTTAGGTATACGGAGTTCATTCACAGTCTAAGCATACGAAGTTCATTCCCTGTCA
194 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* * ** *
20238503 AAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGTCGCAT
259 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTAT
* *
20238568 TTTTCTTCGTCGGGGCACTATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTC
324 TTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTC
* * *
20238633 CGACGATCGGGGGTCCAGGGGGGCGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG-CCTT
389 CGACGATCGGGGG-GC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
20238697 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATT
452 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
20238762 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
517 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
20238827 AAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCACAAAAAATACAGGGAT
582 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * *
20238892 CACATCTACCAA-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAA
647 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAA
* * *
20238956 AAGTTTCAAAAATCAGGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
712 AAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
20239021 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCATAAATATGAAGATGT
777 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGT
** **
20239086 GCCTAAACCTGCCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTG
842 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * *
20239141 GCTGGCATAGTTCCCGCCCGCCCACCCGCCGTTTGTTTCGTCGATTGGCTTTGGCATACGGAGTT
1 GCCGGCGTAGTGCCCGCCCGCCCACCCG-C--TTGTTTCGTCGGTTGGCTTAGGCATACAGAGTT
* ** * *
20239206 CATTCCCAGTCTAAGATCAAACCAAACTGAGCGTTGCGGCAGCAGGATCAGCAA-CACGCAGAGG
63 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-G-AAGCACGCAGAGG
* * * * * * * * * *
20239270 GGGACCCGATCGATCCCTTGCATACGTATCCTGCCCTTCTGGCTGGCTGAGAGCCCGCACACTCG
126 GGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCG
* ** *
20239335 TTTCGTGGGTTAACTTAGGCATAAAGAGTTCATTCCAAGTCTAAG-AT-C---G---A-----A-
191 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * * *
20239386 -C------C-G---A-ACCGAGGGTTACGGCAGCACATGCTAGGCTCGGCCATGTGCTGGTGCCG
256 TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCG
** * * *
20239439 TATTTTTCTTCGTTGGGGCACCATCG-CTAGAGCATCATCGGAGAACCTGATCGACGGCATTGGG
321 TATTTTTCTTCGTCAGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGACCGACGGCATTGGG
* * * *
20239503 GGT--G-C---C----GGC--GAGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCA
385 GTTCCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
20239556 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
450 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
20239621 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
515 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * * *
20239686 ACAAAATCTTGTACACTTCGAGTTCTTAGCTAAATTTTTTTATGCATGCCAACAAAAATATAAGG
580 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * * *
20239751 ATCACGTCTACCATGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTGAAAAAT-TCCGAACCGT
645 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT-CGAACCGT
*
20239815 AAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAG
709 AAAAAGTTTCAAAAATCAG-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * * * *
20239879 GCTTAAGGGACCATTGTATGAATTTAGAAGCTATAAAAAAGGCATTGGCATGTAGAAATATAAAG
773 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAG
* *
20239944 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACACATCCCGTCTCTCTG
838 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
20240003 GCCAGG-GTAGTGCCCGCCCGCCCGCCCG-TTCGTGTCGTCAGTTGGCTTAGGCATAC-GTAGTT
1 GCC-GGCGTAGTGCCCGCCCGCCCACCCGCTT-GTTTCGTCGGTTGGCTTAGGCATACAG-AGTT
* ** ** * * * * *
20240065 CATTCCTAGTCTAAGATTGGATTGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGTAAAAGG
63 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-GAAGCACGCAGAGGG
* * * * *
20240130 GGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGT
127 GGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGT
* * *
20240195 TTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAATCTAATCATACGAAGTTCATTCCCAGT
192 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
* * * ** *
20240260 CTAAGATCAGACCAGACTGAGGGTTACGGTGGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT
257 CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGT
* * * * *
20240325 ATTTTTCTTCGTCAGGGCGCCATC-ACTGGAGCATCACCGGAGAACTTAACCGGCGGCATTGGGG
322 ATTTTTCTTCGTCAGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGG
* * * *
20240389 TTTCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCC
386 TTCCGACGA-TCGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
20240454 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAG
449 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
20240518 ATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGT
514 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
20240583 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
579 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* * * * * * *
20240648 GATCACGTCTA-CATGTTTGGGGCCAAAACTCCTGCCGAAAAAATATTAAAAATTCTTGAATCGT
644 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGT
* *
20240712 AAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
709 AAAAAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
20240777 CTTAAGAGACCATTGTATGAATTTACAAGCCATAAAGATGGCATTGGCATA-TAGAAATATGAAG
774 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAGAAATATGAAG
20240841 ATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
838 ATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
20240877 CTTGTCACAG
Statistics
Matches: 4630, Mismatches: 560, Indels: 300
0.84 0.10 0.05
Matches are distributed among these distances:
858 4 0.00
859 161 0.03
860 39 0.01
861 204 0.04
862 235 0.05
863 3 0.00
864 2 0.00
867 1 0.00
868 1 0.00
871 1 0.00
872 2 0.00
873 1 0.00
874 103 0.02
875 1 0.00
878 1 0.00
879 1 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 33 0.01
884 1 0.00
885 101 0.02
886 1 0.00
887 243 0.05
888 243 0.05
889 258 0.06
891 4 0.00
892 2 0.00
893 25 0.01
894 2 0.00
895 213 0.05
896 352 0.08
897 321 0.07
898 163 0.04
899 223 0.05
900 102 0.02
901 16 0.00
902 1 0.00
903 4 0.00
905 8 0.00
906 35 0.01
907 6 0.00
908 310 0.07
909 464 0.10
910 352 0.08
911 165 0.04
912 121 0.03
913 97 0.02
914 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCCGGCGTAGTGCCCGCCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAAGCACGCAGAGGGGGAC
CCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTT
TTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG
ACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
TTCAAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
Found at i:20240249 original size:26 final size:26
Alignment explanation
Indices: 20240213--20240263 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20240203 TTGACTTAGG
*
20240213 CATACGGAGTTCATTCCCAATCTAAT
1 CATACGAAGTTCATTCCCAATCTAAT
*
20240239 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAATCTAA
20240264 GATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAATCTAAT
Found at i:20248330 original size:26 final size:26
Alignment explanation
Indices: 20248292--20248342 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20248282 GTTGACTTAG
*
20248292 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20248318 GCATACGGCGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
20248343 TTGAGGGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20249902 original size:26 final size:26
Alignment explanation
Indices: 20249872--20249925 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
20249862 TGGGTTGACT
** *
20249872 TAGGCATATGGAGTTCGTTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
20249898 TAGGCATCCAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
20249924 TA
1 TA
20249926 AGATCGAACC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:20250790 original size:26 final size:26
Alignment explanation
Indices: 20250754--20250806 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20250744 GTTGACTTAG
*
20250754 GCATATGGAGTTGATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20250780 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20250806 G
1 G
20250807 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:20251228 original size:857 final size:855
Alignment explanation
Indices: 20250076--20251702 Score: 2490
Period size: 857 Copynumber: 1.9 Consensus size: 855
20250066 CGGGTCGGGG
* *
20250076 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTACCCTAATCAAACCTCGAGAACTCACACCC
1 GGGTGCTGGTACTTGGCCCTTATATTGGCACCCTTACCCTAATCAAACCTCAAGAACTCACACCC
* * *
20250141 CTTAAAGAGCATTTGATATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGCAGCCACTAAAGTGTCTGAAATGGGGA
* * *
20250206 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAA
*
20250271 GCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTCGGGCCAAAACTCCTTTCAAAAAAATTTT
196 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTTCAAAAAAATTTT
*
20250336 AAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAC
261 AAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAC
* *
20250401 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGC
326 GAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGAATTGGC
** * * * * * *
20250466 ATGCAGAAATGTGAAGATGTGCCTAAACCCACCTGCCACCTTATCGATCCACGGCTTGCGCATCC
391 ACACAGAAATATGAAGATGTGCCTAAACCCAACTACAACCCTATCGATCCACAGCTTGCGCATCC
* * * *
20250531 CGTCTCTCTGGCCGGCATAATGCTCGCCCGCCC-GTCCACCCGCTCGTTTCGTCGGTTGGCTTAG
456 CGTCTCTCTGGCCGACATAATGCCCGCCC-CCCTGCCCACCAGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
20250595 ACATACGGAGTTCATTTCCAGTC-AGAGATCAGACTAGACCGAGGGTTGCGGCAGTAGGATCGG-
520 ACATACGGAGTTCATTCCCAATCTA-AGATCAGACTAGACCGAGGGTTGCGGCAGCAAGATAGGC
* ** ** * *
20250658 TAGCACGCAGAGGGTTACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTTGCCGGTTGAGC
584 AAG-ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
20250723 ACCTACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTGATTCCCAGTCTAAGCATATGG
648 ACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAGCATACGG
** *
20250788 AGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTGGTGGCAGCACATGCTAGGCTCGAGCA
712 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGGCGGCAGCACATGCTAGGCTCGAGCA
20250853 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGC
777 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGC
20250918 ACAAGATGTACGAT
842 ACAAGATGTACGAT
* * *
20250932 GGGTGCTGGTACTTGGCCCTTATATTGGCA-TCGTATCCCTCATCAAACCTCAAGAACTCACACC
1 GGGTGCTGGTACTTGGCCCTTATATTGGCACCCTTA-CCCTAATCAAACCTCAAGAACTCACA-C
*
20250996 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGCAGCGACTAAAGTGTCTGAAATGGG
64 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGCAGCCACTAAAGTGTCTGAAATGGG
* *
20251061 GACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATGTTTTTGTGC
129 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
* * * *
20251126 AAGCCAACAAAAATACAAGGATC-CTGTCTGCGAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAT
194 AAGCCAAAAAAAATACAAGGATCAC-GTCTACCAAGTTTCGGGCCAAAACTCCTTTCAAAAAAAT
* *
20251190 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGC
258 TTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
20251255 CATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATT
323 CACGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGAATT
*
20251320 GGCACATAGAAATATGAAGATGTGCCTAAACCCAACTACAACCCTATCGATCCACAGCTTGCGCA
388 GGCACACAGAAATATGAAGATGTGCCTAAACCCAACTACAACCCTATCGATCCACAGCTTGCGCA
* * *
20251385 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCCTGCCCACCAGCTTGTTTCGTCGGTTGGCTT
453 TCCCGTCTCTCTGGCCGACATAATGCCCGCCCCCCTGCCCACCAGCTCGTTTCGTCGGTTGGCTT
* * *
20251450 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAAGATAGG
518 AGACATACGGAGTTCATTCCCAATCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAAGATAGG
* * *
20251515 CAAGACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGC
583 CAAGACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
20251580 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGA
648 ACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGA
* * *
20251645 GTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
713 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGGCGGCAGCACATGCTAGGCT
20251703 TGGGCATGTG
Statistics
Matches: 691, Mismatches: 74, Indels: 12
0.89 0.10 0.02
Matches are distributed among these distances:
855 3 0.00
856 128 0.19
857 557 0.81
858 3 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (855 bp):
GGGTGCTGGTACTTGGCCCTTATATTGGCACCCTTACCCTAATCAAACCTCAAGAACTCACACCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGCAGCCACTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAA
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTTCAAAAAAATTTT
AAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAC
GAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGAATTGGC
ACACAGAAATATGAAGATGTGCCTAAACCCAACTACAACCCTATCGATCCACAGCTTGCGCATCC
CGTCTCTCTGGCCGACATAATGCCCGCCCCCCTGCCCACCAGCTCGTTTCGTCGGTTGGCTTAGA
CATACGGAGTTCATTCCCAATCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAAGATAGGCAA
GACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
CACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGGCGGCAGCACATGCTAGGCTCGAGCATCGT
CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACAA
GATGTACGAT
Found at i:20251640 original size:25 final size:26
Alignment explanation
Indices: 20251611--20251662 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
20251601 GTTGACTTAG
20251611 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20251636 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20251662 G
1 G
20251663 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20252157 original size:26 final size:26
Alignment explanation
Indices: 20252120--20252172 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20252110 GTTCACTTAG
*
20252120 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20252146 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20252172 G
1 G
20252173 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20253730 original size:874 final size:869
Alignment explanation
Indices: 20252154--20254820 Score: 3567
Period size: 874 Copynumber: 3.0 Consensus size: 869
20252144 AAGCATACGA
* * *
20252154 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGACGGTTGCAGCAGCACATGCTGGGCTCGGGTA
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
20252219 TGTGCTGGTGCCGCATTTTACTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * * **
20252284 GGCGGCATTGGGGTTCCGACGA-TCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
131 GGCGGCATTGGGGTTTCGGCGATTGA-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGG
20252348 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCT
* * * *
20252413 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAATAGCCATTAAAGTGTCTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* * * * *
20252478 CATTTTTCAAATGGTCACAAAATATTGTAAACATCGAGTTTTTAGCTGAATTTTTTTGGGCATGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
20252543 CAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGACCAAAAATCATTCCGAAAAAATTTTAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGA-CAAAACTCCTTTCGAAAAAATTTTAA
* *
20252608 AAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTACCATGA
452 AAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
*
20252673 AACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
20252738 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** * * * * *
20252803 TCTCTCTGGCTGGCGTTGTGCCTGCCTGA-CCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATAC
647 TCTCTCTGGCCGGCG-CCTGCCCG-CTCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
* *
20252867 AGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGTAGGATCGATAGCACGC
710 AGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGC-GTAGCAGGATCGACAGCACGC
* * * * * **
20252932 AAAGGGGGACCGGACCGATCCCTGGCTTACGCATCCTGCCCCTCTGGCCGGCAGAGCGCCCGTAT
774 AAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACAT
*
20252997 GCTCATTTCATGGGTTGACTTAGGCATATGG
839 GCTCGTTTCATGGGTTGACTTAGGCATATGG
* * * * *
20253028 AGTTCATTCCCAGTCTAAGATCGGTTCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
20253093 TGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACTATCGTCGGAGCATCGTCGGAGAACCTAACC
66 TGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* *
20253158 GGTGGCATTGGGGTTTCGGCGATTGAGGGGGCCGGGGTGGTGTGCGCAAATGATGTGCAATGGGT
131 GGCGGCATTGGGGTTTCGGCGATTGAGGGGGCCGGGG-GGTGTGCGCACATGATGTGCAATGGGT
* *
20253223 GCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCTTCAAACCTCGAGAACTCACACCCCTTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TT
* *
20253288 AAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTATAAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
* *
20253353 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTATGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
20253418 AACAAAAATACAAGGATCACGTCTACCAAGTTTAGGG-CGAAAACTCCTTTCGAAAAAATTTTAA
389 AACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGAC-AAAACTCCTTTCGAAAAAATTTTAA
* * * *
20253482 AAAAT-CTAGAACCGCAAAAAGGATT-AAAAATCGTGAAAAATAAAAAATGAGTCATCTTGCCAT
452 AAAATCCT-GAACCGCAAAAA-GTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCAT
* * *
20253545 GAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGTCATAAAAATGGTATTGGC
515 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
20253610 ATGCAGAAATATGAAGTTCTGCCTAAACCCACCTACCACCCTACCGAAT-CACGGCTTGCGCATC
580 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCACGGCTTGCGCATC
*
20253674 TCGTCTCTCTGGCCGGCGCACTGCCCGCTCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
644 CCGTCTCTCTGGCCGGCGC-CTGCCCGCTCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
* * ** *
20253739 ACGGAGTTCATTCCTAGTCTAAGATTGGACCAAACCAAGGGTTGCGTAGCAGGATCGACAGCACG
708 ACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGTAGCAGGATCGACAGCACG
* * *
20253804 CAGAA-GGGAACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCAGGCCGGTTGAGCGCCCAC
773 CA-AAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCAC
*
20253868 ACGCTCGTTTCATGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAACATACG
837 ATGCTCGTTTCATGGGTTGACTTAGG----C--A--T-A-T----G-----------G
* *
20253926 AAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGGACATGCTGGGCTTGGGC
1 -AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
20253991 ATGTGCTGGTGTTGTATTTTT-TTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGAC
65 ATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
* * * * * *
20254055 CGGCCGCATTGGGGTTTCAGCGATCGAGGGGGCCGGGGGGTGTACGCACACGATGTTCAATGGGT
130 CGGCGGCATTGGGGTTTCGGCGATTGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGT
* * * *
20254120 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAACAACTCACACCCACTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTT
* * **
20254185 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTTGCCATTAAAGTGTCTAAAATGGAAACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
*
20254250 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
20254315 AACAAAAATACAAGGATTACGTCTACCACGTTTGGGGTCAAAACTCC-TTCTGAAAAAATTTTAA
389 AACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACAAAACTCCTTTC-GAAAAAATTTTAA
*
20254379 AAAATCCTGAACC-CTAAAAAGTTTCAAAAATTGTAAAAAAT-AAAAACGAGTCGTCTTGCCATG
452 AAAATCCTGAACCGC-AAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATG
*
20254442 AAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
20254507 CGTAGACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
581 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
20254572 GTCTCTCTGGCCGGCATAGTGCCTACCCGCCCGCCTGCCCGCT-AGTTTCATCGGTTGGCTTAGG
646 GTCTCTCTGGCCGGC-----GCCTGCCCGCTCACCCGCCCGCTCA-TTTCGTCGGTTGGCTTAGG
* ** * * * *
20254636 CATACAGAGTTCATTCTCAGTCTAAGATCAGACAGGACCGAAGTTTGCAGCAGCAGGATCGACAG
705 CATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGC-GTAGCAGGATCGACAG
* * * * * * * *
20254701 CACACAGAGGGGGACCCAACTGATCCCCGACTTGCGCATCCCGCCCCTCTAGCTGGCTGAGCACC
769 CACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * **
20254766 CACATGCTCGTTTTATGGGTTGACTTACGCATACAG
834 CACATGCTCGTTTCATGGGTTGACTTAGGCATATGG
20254802 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
20254821 CATACGGAGT
Statistics
Matches: 1572, Mismatches: 169, Indels: 103
0.85 0.09 0.06
Matches are distributed among these distances:
873 107 0.07
874 658 0.42
875 29 0.02
876 1 0.00
877 1 0.00
879 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
887 1 0.00
892 1 0.00
893 1 0.00
895 3 0.00
896 157 0.10
897 286 0.18
898 78 0.05
899 77 0.05
900 73 0.05
901 95 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
GGCGGCATTGGGGTTTCGGCGATTGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGACAAAACTCCTTTCGAAAAAATTTTAAAAAA
TCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGCCTGCCCGCTCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTT
CATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGTAGCAGGATCGACAGCACGCAAAGGGG
GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACATGCTCGTT
TCATGGGTTGACTTAGGCATATGG
Found at i:20253925 original size:26 final size:26
Alignment explanation
Indices: 20253895--20253944 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20253885 TGACTTAGGT
*
20253895 ATACGGAGTTCATTCCCAGTCTAAAC
1 ATACGAAGTTCATTCCCAGTCTAAAC
20253921 ATACGAAGTTCATTCCCAGTCTAA
1 ATACGAAGTTCATTCCCAGTCTAA
20253945 GATCAGATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAAC
Found at i:20254319 original size:897 final size:899
Alignment explanation
Indices: 20253028--20254986 Score: 2762
Period size: 897 Copynumber: 2.2 Consensus size: 899
20253018 AGGCATATGG
* * **
20253028 AGTTCATTCCCAGTCTAAGATCGGTTCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCA
* * *
20253093 TGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACTATCGTCGGAGCATCGTCGGAGAACCTAACC
66 TGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
** * * * *
20253158 GGTGGCATTGGGGTTTCGGCGATTGAGGGGGCCGGGGTGGTGTGCGCAAATGATGTGCAATGGGT
131 GGCAGCATTGGGGTTTCAGCGATCGAGGGGGCCGGGGTGGTGTACGCAAACGATGTGCAATGGGT
* * * * *
20253223 GCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCTTCAAACCTCGAGAACTCACACCCCTTT
196 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAACAACTCACACCCCTTT
* * **
20253288 AAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTATAAAATGGGGACAC
261 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATAAAATGGAAACAC
*
20253353 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTATGCATGCC
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTATGCACGCC
20253418 AACAAAAATACAAGGATCACGTCTACCAAGTTTAGGG-CGAAAACTCCTT-TCGAAAAAATTTTA
391 AACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGTC-AAAACTCCTTCT-GAAAAAATTTTA
* *
20253481 AAAAAT-CTAGAACCGC-AAAAAGGATT-AAAAATCGTGAAAAATAAAAAATGAGTCATCTTGCC
454 AAAAATCCT-GAACC-CTAAAAA-GATTCAAAAATCGTAAAAAAT-AAAAACGAGTCATCTTGCC
* * *
20253543 ATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGTCATAAAAATGGTATTG
515 ATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTG
* * *
20253608 GCATGCAGAAATATGAAGTTCTGCCTAAACCCACCTACCACCCTACCGAAT-CACGGCTTGCGCA
580 GCACGCAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTACCG-ATCCACGGCTTGCACA
* * * *
20253672 TCTCGTCTCTCTGGCCGGC-GCACTGCCCGCTCACCCGCCCGCTCA-TTTCGTCGGTTGGCTTAG
644 TCCCGTCTCTCTGGCCGGCAGC-CTACCCGCCCACCCGCCCGCT-AGTTTCATCGGTTGGCTTAG
* ** *
20253735 GCATACGGAGTTCATTC-CTAGTCTAAGATTGGACCA-AACC-AAGGGTTGC-GTAGCAGGATCG
707 GCATACAGAGTTCATTCTC-AGTCTAAGATCAGA-CAGAACCGAA-GGTTGCAGCAGCAGGATCG
* * * *
20253796 ACAGCACGCAGAAGGGAACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC-AGGCCGGTTGA
769 ACAGCACACAGAAGGGAACCCAACCGATCCCCGACTTGCGCATCCCGCCCCTCTA-GCCGGCTGA
* * * *
20253860 GCGCCCACACGCTCGTTTCATGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAACATAC
833 GCACCCACACGCTCGTTTCATGGGTTGACTTACGCATACAGAGTTCATTCCCAGTCTAAACATAC
20253925 GA
898 GA
* * *
20253927 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGGACATGCTGGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCA
* * *
20253992 TGTGCTGGTGTTGTATTTTT-TTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * *
20254056 GGCCGCATTGGGGTTTCAGCGATCGAGGGGGCCGGGG-GGTGTACGCACACGATGTTCAATGGGT
131 GGCAGCATTGGGGTTTCAGCGATCGAGGGGGCCGGGGTGGTGTACGCAAACGATGTGCAATGGGT
*
20254120 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAACAACTCACACCCAC-T
196 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAACAACTCACACCC-CTT
* *
20254184 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTTGCCATTAAAGTGTCTAAAATGGAAACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATAAAATGGAAACA
* *
20254249 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTATGCACGC
* * *
20254314 CAACAAAAATACAAGGATTACGTCTACCACGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGTCAAAACTCCTTCTGAAAAAATTTTAA
* * *
20254379 AAAATCCTGAACCCTAAAAAGTTTCAAAAATTGTAAAAAATAAAAACGAGTCGTCTTGCCATGAA
455 AAAATCCTGAACCCTAAAAAGATTCAAAAATCGTAAAAAATAAAAACGAGTCATCTTGCCATGAA
*
20254444 ACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACG
520 ACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
20254509 TAGACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGT
585 CAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCACATCCCGT
* *
20254574 CTCTCTGGCCGGCATAGTGCCTACCCGCCCGCCTGCCCGCTAGTTTCATCGGTTGGCTTAGGCAT
650 CTCTCTGGCCGGC--A--GCCTACCCGCCCACCCGCCCGCTAGTTTCATCGGTTGGCTTAGGCAT
* *
20254639 ACAGAGTTCATTCTCAGTCTAAGATCAGACAGGACCGAAGTTTGCAGCAGCAGGATCGACAGCAC
711 ACAGAGTTCATTCTCAGTCTAAGATCAGACAGAACCGAAGGTTGCAGCAGCAGGATCGACAGCAC
* * * *
20254704 ACAGAGGGGGACCCAACTGATCCCCGACTTGCGCATCCCGCCCCTCTAGCTGGCTGAGCACCCAC
776 ACAGAAGGGAACCCAACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCAC
* * * *
20254769 ATGCTCGTTTTATGGGTTGACTTACGCATACAGAGTTCATTCCCAGTCTAAGCATACGG
841 ACGCTCGTTTCATGGGTTGACTTACGCATACAGAGTTCATTCCCAGTCTAAACATACGA
* * * *
20254828 AGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCA
** * * * * * *
20254893 TGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATTGCCAGAGCATCCTCGGAGAACCTGATC
66 TGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* *
20254958 GGCAGCATTGGGGTTCCAGCAATCGAGGG
131 GGCAGCATTGGGGTTTCAGCGATCGAGGG
20254987 TGATAGCAGG
Statistics
Matches: 937, Mismatches: 104, Indels: 35
0.87 0.10 0.03
Matches are distributed among these distances:
895 2 0.00
896 154 0.16
897 287 0.31
898 78 0.08
899 79 0.08
900 70 0.07
901 203 0.22
902 64 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCA
TGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
GGCAGCATTGGGGTTTCAGCGATCGAGGGGGCCGGGGTGGTGTACGCAAACGATGTGCAATGGGT
GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAACAACTCACACCCCTTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATAAAATGGAAACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTATGCACGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGTCAAAACTCCTTCTGAAAAAATTTTAAA
AAATCCTGAACCCTAAAAAGATTCAAAAATCGTAAAAAATAAAAACGAGTCATCTTGCCATGAAA
CTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCACATCCCGTC
TCTCTGGCCGGCAGCCTACCCGCCCACCCGCCCGCTAGTTTCATCGGTTGGCTTAGGCATACAGA
GTTCATTCTCAGTCTAAGATCAGACAGAACCGAAGGTTGCAGCAGCAGGATCGACAGCACACAGA
AGGGAACCCAACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCACACGCT
CGTTTCATGGGTTGACTTACGCATACAGAGTTCATTCCCAGTCTAAACATACGA
Found at i:20254830 original size:26 final size:26
Alignment explanation
Indices: 20254794--20254846 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20254784 GTTGACTTAC
20254794 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
20254820 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20254846 G
1 G
20254847 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20257324 original size:909 final size:897
Alignment explanation
Indices: 20255097--20262079 Score: 8823
Period size: 893 Copynumber: 7.8 Consensus size: 897
20255087 GTTGACTTAG
* * ** ** * * *
20255097 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATGGGACCAAAGGTTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* *
20255162 CTCGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATC-TCTGGAGCATCGCCAGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATC-GGAGCATCGCCGGAG
**** * * * *
20255226 AACCTGATTAACGGCATTGGGGTTTCGACGATCGGGGGGGCGGGGGGTGTGCACACATGATGTGT
130 AACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
20255291 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-CCTCTCATCAAACCTTGAGAACTCAC
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC-CTCATCAAACCTTGAGAACTCAC
* * * *
20255355 ACCCCCTTAAATAGCATTTGAGATTTTATAGGTTTGCTGCCAGGAGCCATTAAAGTATCT-AGAA
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AA
*
20255419 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
20255484 GTACATGCCAA-AAAATATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
387 GTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* *
20255548 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
20255613 TTGCCATGAAACTTCACATGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
20255678 CGTTGGCATGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
20255743 CGCATCCTGTCTCTCTAGCCGACGTAATGCCCGCCCG--CCCGC-TCGT--TTCGTCGGTTGGCT
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCATCGTCGTTCGTCGGTTGGCT
* * * * * * *
20255803 TAGGCTTATGGAGTTCATTCCCATTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTAGGATTG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGA-TC
* * * ** * * *
20255868 GTAGCACGTAGAGGGGGACGCAATCGATCCCCGACTTGCGCATCCTGTCCCTCTGGCTGACTGAG
775 GCAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
* *
20255933 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATCATT-CCAGTCTAA
840 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
20255990 GCATACGGAGATCATTCCCAGTCGAAGATCGGACCAAACCGAGGGTTGCGGCAACACATGC-CGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
*** * *
20256054 CTCGAAAATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCAGG-G
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCC-GGAG
* *
20256118 AACCTGACAGGCGGCATTGGGGTTCC-AGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATT-GGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
20256182 GCTATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
20256247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
20256312 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCTAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
20256377 TTGAATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * ** ** * * * *
20256442 TATTTTAAAAAATCCCGAACCCCAAAAAGTTTTGAAAATCTTAAAAAATAAAAAATGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
20256507 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
20256572 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
582 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * **
20256637 GCATCTCATCTCTCTGGCCAATGTTTTGCCCGCCCGCCCGCCTGCATGCCTGTTCGTGTCGTCGG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CC-GCAT--C-G-TCGT-TCGTCGG
* ** * *
20256702 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCA
705 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTA
* * *
20256767 AGATCAGCAGCACGTAGAGGGGGACCCAGCCGATCCCCGCCTTGCGCATCCCGCCCCTCTGGCTG
770 GGATC-GCAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTG
* * * * * *
20256832 GCTGAGCGCCCGTACGCTCGTTTTGTGGTTTAACTTAGGCATACAGAGTTCATTCCCAATCTAA
834 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
20256896 GCATACAGAGTTCATTCCC-CTCTAAGATCAGACCGGAGTGAGGGTTGCGGTAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* *
20256960 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * *
20257025 ACCTGACCGGCGGCATTAGGGTTTCGACGATCGGGGTGGCCAAAGGGGTGTGTGCGCACATGATT
131 ACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGG-GGCC---GGGGGGTGTGCGCACATGATG
* *
20257090 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAATCTTGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
20257155 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
20257220 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * **
20257285 TGTGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * ** * *
20257350 AGATTTGAAAAAATCTCGAACCCTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAATCGTT
451 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
20257415 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
20257480 CATTGGCACGTAGAAGTATGAAGACT-TGCCTAAAGCCACCTACCACCCTATCGATTCACGGCTT
581 CATTGGCATGTAGAAATATGAAGA-TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
20257544 GCGCATCACGTCTCTCTGGCCCGACAG-AGTGCCTGCCTGCCCGCC-CACCCGCTTGTTTCGTCG
645 GCGCATCCCGTCTCTCTGG-CCGAC-GTAGTGCCCGCCCGCCC-CCGCA-TCG-TCG-TTCGTCG
* * * * * * **
20257607 GTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAACATCAGACCAGACTGAGGGTTCCGACAGT
704 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGT
* * * *
20257672 AGGATCGGCAGCACGTAGAGGGGGACCC-GACCGATCCCCGGCTTGAGCATCCCACCCCTCTGGC
769 AGGATC-GCAGCACGCAGAGGGGGACCCAG-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGC
* * * * *
20257736 CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAATTCATTCCCAGTCTA
832 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
20257801 A
897 A
* * ** * * *
20257802 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACAAGA-TCAAGGGTTGCGGCCA-AATATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTGCGG-CAGCACATGCTG
* * * * **
20257865 GGCTCAGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGA
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGA
* * *
20257930 GAACCTGACCGACGGCATTGACGTT-CGAGCGATCGGGGGGGCTGGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGGCGGCATTG-GGTTCCGA-CGATC-GGGGGGC-CGGGGGGTGTGCGCACATGAT
* ** * * **
20257994 GTGCGATGGCTGCTTTTACTTGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCAAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
**
20258059 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGTGT-TCG
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-G
* * *
20258122 AAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTT
319 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
20258187 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
384 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * *
20258252 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCG
449 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
20258317 TCTTGCCATGAAACTTCACGTGAAGGCTTTAAGGGACCATTGTATGAATTTAAAAACCATAAAAA
514 TCTTGCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
20258382 TGGCATTGGCACGTAGAAAGATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
578 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
20258447 TTGCGCATCCCGTCTCTCTAGG-CGGCGTAGTGCCCGCCCACCCACCTGC-CCGCTCAATTCATC
643 TTGCGCATCCCGTCTCTCT-GGCCGACGTAGTGCCCGCCCGCCC-CC-GCATCG-TC-GTTCGTC
* * * * * *
20258510 TGTTGGCTTAGGCATCCGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGTTTGCGGTAG
703 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
* * * *
20258575 GAGGATCGATAGCACGCAGAGGGGGA-CCTGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGG
768 TAGGATCG-CAGCACGCAGAGGGGGACCCAG-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
* * * * *
20258639 CCGGTTAAGCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCTCAGTC-
831 CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
20258703 --
896 AA
* * *
20258703 -C--A---AG---A-T--CA----AA-CT-GGA-C---C-GAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
20258745 CTCGGGCTTGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTGGGGGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * * * *
20258810 ACCTGACCAGCGGCATTAGGGTTCCGGCAATCGAGAGGGCC-GAGGG-GTACGCACATGATGTGC
131 ACCTGACCGGCGGCATT-GGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * ** *
20258873 GATGGGTGTTGGCACTTGACCCTTATATTCACCCCCTATCCCTCAAT-AAACCTCGAGAACTCAC
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTTGAGAACTCAC
* *
20258937 ACCCTCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * *
20259002 GGGGACTTTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
20259067 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCCTTCTG-AAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAAA
* * *
20259131 AATTTTAAAAAATCACGAACTC-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTGGTC
452 AATTTTAAAAAATCTCGAAC-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
20259195 TCGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
20259260 CATTGCGCA--AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTT
581 CATTG-GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
20259323 GCACATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCACCTACCCGCAT-GCTCGTTTCGTCGGT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC--CCCGCATCG-TCG-TTCGTCGGT
* * * * * *
20259387 AGGCTTAGGCATACGGAGTTCATTCCCAATCTAACATTAGACCGGATCGAGGGTTGTGGTAGTAG
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAG
* * * *
20259452 GATCGACAGCACACAGAGGGGGACCC-GACCGATCCCCGACTTACGCATCCCACCCCTCTGGCTA
771 GATCG-CAGCACGCAGAGGGGGACCCAG-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTG
* *
20259516 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAA
834 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
20259580 GCATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGA-TCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTGCGGCAGCACATGCTGG
* * * * * * *
20259644 GCTTGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGAGGCACCACCGTCGGAGCATCGCCAGTG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAG
* * * * * * *
20259709 AACCTGACCGACAGAATTGAGGTTCCGACGATCGGGGGGCCAAGGGGCTGTGTGCACATGACGTG
130 AACCTGACCGGCGGCATTG-GGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
20259774 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCAT
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
20259839 GCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
20259904 GGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * *
20259969 TGCATGCCAACAAAAATACAATGATCACGTC-AGCAATGTTCAGGTCCAAAACTCCTTCCGAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAAATCCTTCCGAAAA
20260033 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
20260098 TGTCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
20260163 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * * * * * *
20260228 GCATCTTGCCCCTCTGGTCGACATATTGCCCGCCCGTCCACCAGC-TCGT--TTCCTCGATTGGC
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-CCCGCATCGTCGTTCGTCGGTTGGC
* * * * * * *
20260290 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGTGTTTCGGTAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATC
* * * * * *
20260355 GATAGCACGCAGAGTGGGACCCAGTCGATCCCC-AGCTTGTGCA-CCCGCCCCTCTGTCCGGCTG
775 G-CAGCACGCAGAGGGGGACCCAGCCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCTGGCTG
* * * * * *
20260418 AGTGCCTGCACGCTCGTTTTGTGGCTTGAGTTAGGCATACGGAGTTCACTCCCAGTCTAA
838 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
20260478 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCACCTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * *
20260543 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCG-CTGAGG----A--A-C----CATCGTCGAAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCATCGGAGCATCGCCGGAG
* * * *
20260596 AACCTGATCGGAGGCATTGGGGTTCCGACAATCGGGGGGCCGGGGGGGGTGTGTGCACATGATGT
130 AACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* *
20260661 GCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * *
20260726 CACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAG
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20260791 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
20260856 ATGCATGCCAAAAAAAATACAAGGATCACGTATGCCAAGTTTGGGGCCAAAAAATCCTTCCAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAAATCCTTCCGAAA
*
20260921 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
20260986 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
20261051 TATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
581 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
20261116 CGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--CCCGC-TCGT--TTCATCGGTTGGCT
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCATCGTCGTTCGTCGGTTGGCT
* * *
20261172 TAGGCATTCGGAGTTCATTCCCAGTCTAAGATTC-GACCGGGCCGAGGGTTGTGGTAGTAGGATT
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTGCGGTAGTAGGA-T
* * * ** *
20261236 GGCAGCACACAGAGGGGGACCCGAG-CGATCCCCGGCTTGCGCATGTCGCCCCTCTGGCTAGCTG
774 CGCAGCACGCAGAGGGGGACCC-AGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTG
* * *
20261300 AGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
838 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
20261360 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
* ** * * **
20261425 CTCGGGCATGTGCTTGTGCCGTATTTTTCTTCGTCGGGGTACCATC-GCTGGAGCATCAACGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATC-GGAGCATCGCCGGAG
* ** * *
20261489 AACCTGATCGGCAACTTTGGGGTTCCGACGATCGGGGGACCGGGGGGTGTGCGCACATGATGTGC
130 AACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
20261554 AATGGGTGCTGGTACTTGACTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * *
20261619 CCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTTAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
20261684 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
20261749 GCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGTCCAAAACCCCTTCCGAAAAA
389 GCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * *
20261814 ATTTTAAAAAATCCCAAACCGTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
20261879 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
20261944 ATTGGCATGTAGAAATATGAAGATGTGCCCAAACCCACCTACCACCGTATCGATCCACGACTTAC
582 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
20262009 GCATCCCGTCTCTCTGGCCGATGTAGTGCCTGCCCG--CCCG-TTCGT--TTCGTCGGTTGGCTT
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCATCGTCGTTCGTCGGTTGGCTT
20262069 AGGCATACGGA
712 AGGCATACGGA
20262080 CCGGACCGAG
Statistics
Matches: 5307, Mismatches: 643, Indels: 277
0.85 0.10 0.04
Matches are distributed among these distances:
873 2 0.00
874 261 0.05
875 115 0.02
876 258 0.05
877 12 0.00
878 101 0.02
879 3 0.00
880 1 0.00
881 102 0.02
882 160 0.03
883 5 0.00
884 1 0.00
885 7 0.00
886 2 0.00
887 41 0.01
888 240 0.05
889 227 0.04
891 248 0.05
892 303 0.06
893 561 0.11
894 9 0.00
895 5 0.00
896 40 0.01
897 3 0.00
898 163 0.03
899 105 0.02
900 104 0.02
901 20 0.00
902 360 0.07
903 91 0.02
904 452 0.09
905 390 0.07
906 316 0.06
907 119 0.02
908 7 0.00
909 454 0.09
910 18 0.00
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCGCATCGTCGTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGCAGCA
CGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20257806 original size:26 final size:26
Alignment explanation
Indices: 20257776--20257828 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20257766 GTTGACTTAG
*
20257776 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
20257802 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
20257828 G
1 G
20257829 ATCGAACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:20260488 original size:26 final size:26
Alignment explanation
Indices: 20260452--20260504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20260442 CTTGAGTTAG
20260452 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
20260478 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
20260504 G
1 G
20260505 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:20261373 original size:26 final size:26
Alignment explanation
Indices: 20261337--20261386 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
20261327 GACTTAGGCG
20261337 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
20261363 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20261387 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:20264503 original size:878 final size:871
Alignment explanation
Indices: 20263191--20266557 Score: 4358
Period size: 878 Copynumber: 3.8 Consensus size: 871
20263181 GGAGAGTCGG
* *
20263191 GGGGTGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATCTTGGCCCCCTATCC
1 GGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
20263256 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
65 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
** * *
20263321 GTAGCCACAAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACATTT
130 GTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
20263385 CGAGTTTTTAGCTGAATTTTTTTTTGCAAGCAAAAAAAAATA-AAGGATCATGTCTACCAAGTTT
194 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
20263449 TGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGT
259 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAT
20263514 GACAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
324 GA-AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
20263579 AATTTACAAGCCATAAAAATGGCATTGGCTCGCCA-AAATATGAAGATGTGCCTAAACCCACCTA
388 AATTTACAAGCCATAAAAATGGCATTGGC-AGGCAGAAATATGAAGATGTGCCTAAACCCACCTA
20263643 CCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGGCGTAGTGCCCGACCGCCCGC
452 CCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGGCGTAGTG--C--CCGCCCGC
** * **
20263708 CCGCCCGCTCGTTTCGTTAGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACCCCA
513 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * ** *
20263773 GACCGAGGGTTGTGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCTAGCTTGT
578 GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGC
* * * *
20263838 GCATCCCGCCCCTCTGGCCGGCTAAGCGCCCACACGCTCATTTCGTTGGTTGACTTAGGCATACG
643 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACA
* * *
20263903 GAGTTCATTCCCAGTCTATGATCGGACCGGATTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
708 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
* * *
20263968 ATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCATCGGACCATCGCCGGAGAACCTGAC
773 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGAC
** *
20264033 CGGCGACATTAAGGTTCTGACGATCGGGGGGGCC
838 CGGCGACATTGGGGTTCCGACGATCGGGGGGGCC
* * *
20264067 AGGGGGTGTGCGCACATGATGTGTGATAGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCA
1 -GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-
* *
20264132 CC-CATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGACATTTTACAGGTTTGCTGCC
64 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
20264196 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTT
129 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
20264261 CGAGTTTTTATCTGATTTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTT
194 CGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * *
20264326 TGGGGCCAAAACTCCTTTCGAAAAAACTTTAAAAAATC-CTGAACCGCAAAAAGTTTTAAAAATC
258 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATC
*
20264390 ATGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTA
322 ATGAAA-ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
** * *
20264455 TGAATTTACAAGTTATAAAAATGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCTACCT
386 TGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
20264520 ACCACCCTATCGATCCTCGGCTTGCACATCTCATCTCTCTTGCCGGCGTAGT--------GCCCG
451 ACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * ** *
20264577 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTCCATTCCCAGTCTAAGATTGGA-CTGAA
516 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A
* * * * *
20264641 CCGATGGTTGTGGCTA-CAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCA
580 CCGAGGGTTGCGG-TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
* *
20264705 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGTTCATTTCATGGGTTGACTAAGGCATATGG
644 CATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCATTTC----G-TG-----GG--T-T-G
* * *
20264770 AGTTCATTCCCAGTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
695 A---C-TT---AG-----GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * * **
20264835 G-TGACATCACATGCTGGGCTCGGGCATATGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATC
748 GCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
* * * * * * *
20264899 GCCGGAGCATTGCTGGAGAACCTGACCGACGTCATTGGGGTTCCGGCGATC---GAGG--
812 ACCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCC
**
20264954 GGGGGTGTGCGCACATGATGTTTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CC
* * *
20265019 AT-ATCAAACCTTGAGAACTCACACCCCCTTAAAGTGCATTCGAGATTTTACAGGTTTGCTGCCA
65 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* ** * * *
20265083 GTAGCCATTAAAGTGTCTAAAATGGGGATGCATTTTTCAAATGGTCACAAAATCTTGTAAACTTT
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
20265148 GAGTTTTTGGTTGAATTTTTTTGGGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * **
20265213 GGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATGTCGAACCGTAAAACA-TTTTGAAAATCAT
260 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAA-AGTTTCAAAAATCAT
* * *
20265277 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAGGTGAAGGCTTAAGCGACCATTGTATG
324 G-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
20265342 AATTTACAAGCCATGAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
20265407 CACCTTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGTCCGCCCGCCCGCC
453 CACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-C
* *
20265472 TGCCTTCTCGTTTCGTCGGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
517 --CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * *
20265537 ACTGAGGGCTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACTCGACTGGTCCCCGGCTTGCG
579 ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
* * * *
20265602 CATCTCG-CCCTATGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTACGCATACAG
644 CATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAG
* * * *
20265666 AGTTGATTCCCAGCCTAAGATCAGACCGTACTGAGGGTTGCCGCAGCACATGCTGGGCTCGGGCA
709 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
* * * *
20265731 TGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCAGAGAACCTGACC
774 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACC
*
20265796 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCC
839 GGCGACATTGGGGTTCCGACGATCGGGGGGG-CC
*
20265830 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATC
1 --GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
**
20265895 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
64 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
20265960 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTGGTACACTT
129 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* ** * * * *
20266025 CGAGTTTTTCGCTGAATTTTTTTGTGCATGTGAACAAAAACACAAGGATCACGTCTACCATGTTA
194 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
20266090 GGGGCCAAAACTCCTTCC-ACAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCG
259 GGGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCA
*
20266154 TGAAAAGTAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
323 TGAAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
20266219 GAATCTACAAGCCATAAAAGTGGC-TATGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
387 GAATTTACAAGCCATAAAAATGGCAT-TGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * **
20266283 ATCAGCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCATG
451 ACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* *
20266348 CCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGAC
516 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * * ** * * *
20266413 TGAGGGTTGCGGCAGTAGGATTGGTAGCATGCAGAGGAGGACCTAGCCGATCCTCGACTTACGCA
581 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCA
* * * * ** **
20266478 TCCCACCACTCTGGTCGACTGGGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAG
646 TCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAG
*
20266543 TTCATT-CTAGTCTAA
711 TTCATTCCCAGTCTAA
20266558 ACATACAGAG
Statistics
Matches: 2172, Mismatches: 248, Indels: 143
0.85 0.10 0.06
Matches are distributed among these distances:
865 2 0.00
866 149 0.07
867 2 0.00
870 140 0.06
871 2 0.00
873 3 0.00
874 116 0.05
875 59 0.03
876 200 0.09
877 35 0.02
878 700 0.32
879 2 0.00
880 2 0.00
882 2 0.00
883 2 0.00
884 3 0.00
885 246 0.11
886 208 0.10
887 3 0.00
889 3 0.00
891 3 0.00
892 139 0.06
893 5 0.00
894 1 0.00
896 35 0.02
897 108 0.05
898 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (871 bp):
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
GTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG
CCCCTCTGGCCGACTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
TCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGACA
TTGGGGTTCCGACGATCGGGGGGGCC
Found at i:20264798 original size:26 final size:26
Alignment explanation
Indices: 20264757--20264814 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
20264747 CATGGGTTGA
* *
20264757 CTAAGGCATATGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTCCATTCCCAGT
20264784 CTAAGCATACGGAGTCCATTCCCAGT
1 CTAAGCATACGGAGTCCATTCCCAGT
20264810 CTAAG
1 CTAAG
20264815 ATCAGACCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGTCCATTCCCAGT
Found at i:20266568 original size:25 final size:26
Alignment explanation
Indices: 20266534--20266583 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
20266524 TTGACTTAGG
*
20266534 CATACAGAGTTCATT-CTAGTCTAAA
1 CATACAGAGTTCATTCCCAGTCTAAA
20266559 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
20266584 GATTGAACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.30
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:20270092 original size:26 final size:26
Alignment explanation
Indices: 20270056--20270108 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20270046 GTTGACTTAG
20270056 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
20270082 GCATAGGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20270108 G
1 G
20270109 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20271450 original size:904 final size:900
Alignment explanation
Indices: 20269196--20275496 Score: 7847
Period size: 904 Copynumber: 7.1 Consensus size: 900
20269186 GTTGACTTAG
* * ** * * * *
20269196 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTTCAGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAGGGTTGCGGCAGCACATGCTGGG
* * * **
20269261 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGG-G--GCA-C--C--A--A-CACCGGGGA
65 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGAGCACCATCGTCGGAGCATCACCGAAGA
* ** * * *
20269315 ACCTGACCGACAGCATTGGGGTTCCGGTGATCGGGGGG-CTAGGAGGTGTGCACACAAGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCC-GTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
20269379 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAAGTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
**
20269444 CCCCCTTAAAGATTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
20269508 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
20269573 GCATGCCAACAAAAATATAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCCTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
20269638 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAATCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * ***
20269703 CCATGAAACTTCAGGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCACAAAAATGATGT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
20269768 TGGCACGTAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
20269833 ATCTCGTCTCTCTGGCCGGCATGGTGCCCGCCCGCCTGCTCG---TTCGTTTCATTGGTTGGCTT
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGTCGTTTCGTCGGTTGGCTT
* * * *
20269895 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAAGGTTAC-GATAGTAGGATTG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-TAGCAGGATTG
* * * *
20269959 ACAGCATGTAGAGGGGGACCCGA-CTGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGA
778 ACAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
20270023 GCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * **
20270082 GCATAGGGAGTTCATTCCTAGTCTAAGATTGGACC-GAACCGAGGGTTGCAGCAGCACATATTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A-TGAGGGTTGCGGCAGCACATGCTGG
* * * * ** * *
20270146 GCTCGAGCTTGTGCTGGTGCCGCATTTTTCTTTGCTGG-GCACCATCACCGGAGCATC-GCTAGA
64 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGAGCACCATCGTCGGAGCATCACCGA-A
* ** * *** * * *
20270209 GAACCTGACTGGTGGCATTGGGGTTCCGATGATCGAGGTTTCGAGGGGGTTGTGCACACATGATC
128 GAACCTGACCGACGGCATTGGGGTTCCG-TGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATG
**
20270274 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAATTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
20270339 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
20270404 ATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTA
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
20270469 TGTGCATGCCGAA-AAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
386 TGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** *
20270533 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
20270598 CTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAAATTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** *
20270663 GCATTGGCACACATAAATATGAAGATGTCCCTAAAATCACCTAACACCCTATCGATCCACGGCTT
580 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
20270728 GCGCATCTCGTCTCTCTGACCGGTGTAGTACCCGCCCGCCTGCCCGCCCGGTCATTTCGTCGATT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCC-GTCGTTTCGTCGGTT
* * *
20270793 GGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCAGTAGCAAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGG
** * * * * *
20270858 ATTGGTAGCACACAAATGGGGACCCGACCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGC
774 ATTGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
** * * *
20270923 TGAATGCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
20270985 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGATAGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAT-GAGGGTTGCGGCAGCACATGCTGGG
* ** * * * *
20271050 TTCGAGCATGTTTTGGTGCCATATTTTTCTTCACCGGAGCAGCATCGTCGAAGCATCACCGAAGA
65 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGAGCACCATCGTCGGAGCATCACCGAAGA
*
20271115 ACCTGACCGACGGCATTGGGGTTCCGTCGATCGGGGGGGCCGGGGAGGGTCTGCGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGT-GATC-GGGGGGCCGGGG-GGGTGTGCGCACATGATGT
* * * *
20271180 GCAATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCGAACCTTGAAAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
20271244 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGTAG
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20271309 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * *
20271374 GTGCATGCCAA-AAAAACTACTTGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 GTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
**
20271438 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* **
20271503 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAACAG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
20271568 CATTGGCACACAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATC-AGTCCACGGCTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCCACGGCTT
* **
20271632 GCGCATCCTGTCTCTCTGGCCGGTATAGTGCCCCCCCGCCCGCCTGCCCGCCCGTTCGTTTCGTC
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCTGCCCGCCCG-TCGTTTCGTC
* * * **
20271697 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGT-TGAACCAGACCGAGGGCTGCAACA
705 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCAGTA
* * * * * * * * *
20271761 ACAGGATCGACAGCACGCGGAGGGGGACTCGACCGATCCCCGACCTACGCATCCCACCCCTCTGG
769 GCAGGATTGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* ** * * *
20271826 CCGACTGAGTACCCACACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
834 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
20271891 AA
899 AA
* * * * *
20271893 GCTTACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCACATGTTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAGGGTTGCGGCAGCACATGCT-GG
** * * ** * * *
20271958 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGCTGAAG
64 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGAGCACCATCGTCGGAGCATCACCGAAG
* * *
20272023 AACCTGACCGGCGGCATTGGGGTTCTGGTGATCAGGGGGCCGGGCGGGGGTGTGCGCACATGATG
129 AACCTGACCGACGGCATTGGGGTTC-CGTGATCGGGGGGCC-GG-GGGGGTGTGCGCACATGATG
20272088 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
20272153 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
20272218 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * * * * * * *
20272283 TGTGTGTGACAATAAAAATACAAGGATCACGTCTACCAAGCTTGCGGCCAAAAATCTTTTCGAAG
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
20272348 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAATCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * * **
20272413 TTGCCATGCAACTTCACGAGAAGGCTTAAAGGACCATTGTATGAATTTACATGCCATAAAAATTT
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * * *
20272478 CATTCGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGACTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
20272543 TGCATACCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGTCAG--C-TCGTTTCGTCGGTTGG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGTCGTTTCGTCGGTTGG
* ** * ** *
20272605 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGAT
* * * * * * * *
20272670 CGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTATAGCTGGTTT
776 TGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-CT
* *
20272735 GAGCGCCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATAC---G---A-----AG--T--
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
20272781 ---T-----G-T--TTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCAGCAGCACATACTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAGGGTTGCGGCAGCACATGCTGGG
* * * *
20272835 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTC-ACTGAGGCACCATCGTGGGAGCATCACCGGAG
65 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGA-GCACCATCGTCGGAGCATCACCGAAG
* * *
20272899 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGTTTGCGCACATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCG-TGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
20272964 ACGATGGGTACTGCTACTTCGCCCTT-TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
20273028 CAACCGCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
20273093 TGGGGGCACTTGTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
20273158 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAATCCTTCTGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
20273223 AATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
20273288 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
20273353 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCATCCTATCGATCCACGGCTTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * **
20273418 GCATCCCGTCTCTCAGGCCGACATAGTGCCCGCCCGCC--CCCG--C-TCGTTTAATCGGTTGGC
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGTCGTTTCGTCGGTTGGC
* * * * *
20273478 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTCCAGCAGCAGGATT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATT
* ** * * * * *
20273543 GGCAGCACGCAGAGGTTGACCAGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTAA
777 GACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
20273608 GCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
842 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
20273667 G-AT-C-G-G---------A--CT--G----GACC----GAGGGTTACGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGAGGGTTGCGGCAGCACATGCTGGGC
* * * * ** *
20273707 TCGGGTATGTGCTGGTGCCGTATTTTTCTTCGTC-GAGGCACCATCGTCGGAGCGTCGTCGTAGA
66 TCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGA-GCACCATCGTCGGAGCATCACCGAAGA
* * * *
20273771 ACATGACCGATGGCATTGGGGTTCCGGCGATTGGGGGGCC-GGGGGGTGTGGCGGCACATGAATG
130 ACCTGACCGACGGCATTGGGGTTCC-GTGATCGGGGGGCCGGGGGGGTGT-GC-GCACATG-ATG
* * ** *
20273835 TGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCCTATCCATCATCTCACCTGGAGAACT
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACT
* *
20273900 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
20273965 AATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
20274030 TTGTCCGTGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
20274095 AAAATTTAAAAAAATCCCAAACCGCAAAAAAGTTTCAAAAATCGTGAAAATTAGAAAACGAGTCG
450 AAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
20274160 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
20274225 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
579 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
20274290 TGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGACC-GCCTGCCAGCTCATTTCGTCGA
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCTGCCCGCCCG-TCGTTTCGTCGG
* * *
20274354 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTCGCA
707 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCA
* * * * *
20274419 GGATTCG-TAGCACGCTGAGGGGGACCC-AGTCGATCCCCGGCTAGCGCATCCTGCCCCTCTAGC
772 GGATT-GACAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
20274482 TGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
835 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
20274547 A
900 A
* *
20274548 GCATACCGAGTTCATTCCTAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
20274613 CTCGGGCATGTGCTGGTGCCGTATTTCTCTTCGTCGGGGCACCATCGTTGGAGCATCACCGGAGA
65 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGAGCACCATCGTCGGAGCATCACCGAAGA
* * * * * *
20274678 ACCTGACC-AGTGGCATTGAGGTTCCAATGATCGAGAGGGCCGGGGCGGTGTGCACACATGATGT
130 ACCTGACCGA-CGGCATTGGGGTTCC-GTGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
20274742 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
20274807 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
20274872 TGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCAAGTTTTTACCTGATTTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
20274937 GTACATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
20275002 AATTTTAAAAAATCTCAAACCACAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
20275067 TGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
20275132 ATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * *
20275197 GCATCCCTTCTCTCTGGCCGGCGCGGTGCCCGCCCGCCT------AC-TCGTTTCATCGGTTGGC
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGTCGTTTCGTCGGTTGGC
* * * *
20275255 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGCGTTGCAGTAGCAAGATT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATT
* * ** * *
20275320 GACAGCACGCAGAGGAGGA-CCAATCGATATCTGGCTTGCGCATCCCGCCCCT-TGGGTCGGCTG
777 GACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTG
* * ** *
20275383 AGCGCCCGCACGCTAGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTTGCAGTATAA
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
20275443 GCATACGGAGTTCATTCCCGGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAGGGTTGCGGCAG
20275497 TAGGATCAGC
Statistics
Matches: 4683, Mismatches: 612, Indels: 231
0.85 0.11 0.04
Matches are distributed among these distances:
869 7 0.00
870 10 0.00
871 145 0.03
872 152 0.03
873 5 0.00
874 644 0.14
875 240 0.05
876 88 0.02
877 52 0.01
879 1 0.00
880 2 0.00
881 176 0.04
882 6 0.00
883 1 0.00
884 3 0.00
885 3 0.00
886 89 0.02
888 3 0.00
889 1 0.00
890 2 0.00
891 1 0.00
892 1 0.00
893 1 0.00
894 2 0.00
895 139 0.03
896 121 0.03
897 2 0.00
898 129 0.03
899 340 0.07
900 3 0.00
902 120 0.03
903 302 0.06
904 646 0.14
905 279 0.06
906 49 0.01
907 112 0.02
908 258 0.06
909 143 0.03
910 399 0.09
911 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGAGGGTTGCGGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGAGCACCATCGTCGGAGCATCACCGAAGAA
CCTGACCGACGGCATTGGGGTTCCGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATTGACA
GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20274558 original size:26 final size:26
Alignment explanation
Indices: 20274522--20274574 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20274512 GTTGACTTAG
*
20274522 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCTAGTCTAA
20274548 GCATACCGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCTAGTCTAA
20274574 G
1 G
20274575 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCTAGTCTAA
Found at i:20275631 original size:185 final size:184
Alignment explanation
Indices: 20275259--20275666 Score: 518
Period size: 185 Copynumber: 2.2 Consensus size: 184
20275249 GTTGGCTTAG
* * *
20275259 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGCGTTGCAGTAGCAAGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCGTTGCAGCAGCAAGATAGACA
* * *
20275324 GCACGCAGAGGAGGACCAATCGATATCTGGCTTGCGCATCCCGCCCCTTGGGTCGGCTGAGCGCC
66 GCACGCAGAGGAGGACCAATCGATACCCGGCTTGCGCATCCCGCCCCTTGGGCCGGCTGAGCGCC
*
20275389 CGCACGCTAGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTTGCAGTATAA
131 CGCACGCTAGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTTCCAGTATAA
* * * * *
20275443 GCATACGGAGTTCATTCCCGGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCAG-C
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCGTTGCAGCAGCAAGAT-AGAC
* * ** * * *
20275507 AGCACGCAGTGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCT-GGCCGGTTGAGC
65 AGCACGCAGAGGAGGA-CCAATCGATACCCGGCTTGCGCATCCCGCCCCT-TGGGCCGGCTGAGC
* * * *
20275571 GCCTGCACGTTCA-TTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCTAGTCTAA
128 GCCCGCACGCT-AGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTTCC-AGTATAA
* *
20275628 GCATACGGAGGTCATTCCCAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
20275667 CAAGTGTTGC
Statistics
Matches: 193, Mismatches: 26, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
184 71 0.37
185 120 0.62
186 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCGTTGCAGCAGCAAGATAGACA
GCACGCAGAGGAGGACCAATCGATACCCGGCTTGCGCATCCCGCCCCTTGGGCCGGCTGAGCGCC
CGCACGCTAGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTTCCAGTATAA
Found at i:20275642 original size:26 final size:26
Alignment explanation
Indices: 20275602--20275654 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20275592 GTTGACTTAG
* *
20275602 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
20275628 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
20275654 G
1 G
20275655 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:20277031 original size:67 final size:67
Alignment explanation
Indices: 20276923--20277049 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
20276913 GGGTTGCGAC
*
20276923 AGCACATGCCGTGCTCGAGCATGTGCTGGTGTTGCATTTTTCTTCACCGGGGCACCATCGTTGGA
1 AGCACATGCCGTGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTTGGA
20276988 GT
66 GT
* *
20276990 AGCACATGCTGTGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCG
1 AGCACATGCCGTGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCG
20277050 CTAGAGCATC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.15, C:0.26, G:0.29, T:0.30
Consensus pattern (67 bp):
AGCACATGCCGTGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTTGGA
GT
Found at i:20277851 original size:26 final size:26
Alignment explanation
Indices: 20277815--20277867 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20277805 GTTGACTTAG
*
20277815 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20277841 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20277867 G
1 G
20277868 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20278749 original size:26 final size:26
Alignment explanation
Indices: 20278712--20278764 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20278702 GTTGACTTAG
*
20278712 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20278738 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20278764 G
1 G
20278765 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20279292 original size:902 final size:902
Alignment explanation
Indices: 20276990--20283060 Score: 4924
Period size: 902 Copynumber: 6.7 Consensus size: 902
20276980 TCGTTGGAGT
* * * **
20276990 AGCACATGCTGTGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCTAGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGA
* * * *
20277055 GCATCACCGGACAACCTGATCGACGGCATTGGGGTTCC-AGCGATCGGGGGGCCGAGGGGGTGTG
66 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCGAGGGGGTGTG
* *
20277119 CACACA-AATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
20277183 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * * * *
20277248 AAGTGTCTAAAATTGGGACACTTTTTTGAAATGGTTACAAAATCTTATACACTTTGAGTTTTTAG
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * *
20277313 TTGAATTTTTTTATGCGTGCCAACAAAAATACAAGGATCACGTCTACTAA-TTTTGGAGCCAAAA
325 CTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGG-GCCAAAA
* * * *
20277377 TTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGAGAAAAAATAA
389 CTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTT-GAAAATCGTG-AAAAATAG
* * *
20277442 AAAATGAGTCTTCTTGCCATTAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAA
452 AAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
20277507 GCCATAAAAATGGAATTGGAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
517 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * ** * * * * *
20277572 GATCCATGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCTGTCCGCTCACTC
582 GATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGATGTAGTGCCCGCCTGCCCGCCCGCACGCTC
* * *
20277637 GTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTTCAACTCTAAGATTGAACTGGAT-AGAGGG
647 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAACTCTAAGATTTAACTGGATCAGAGGG
* * * * * *
20277701 TTACGGTAGCAAGATCGGCAGCACATAGAGGGTGACCC-AGCCGATCCCCAGCTTGCGCATCCCG
712 TTGCGGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCG
* * *
20277765 CCCGTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
776 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
20277830 TTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGG---A---TTGCAGC
841 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAGGGTTGCGGC
* * *
20277886 AGCACATACTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCA-CTGCGGCACCATCGCCGG
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGCCGG
* * * *
20277950 AGCATCGCCAGAAAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCGACGGGGGGTG
65 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGA--GGGGGTG
20278015 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
128 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
20278080 ACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
193 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
20278145 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA-AAAATCTTGTACACTTCGAGTTTTT
258 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
20278209 AGCTGAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-ATTTGCAGCCAA
323 AGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTTG-GGCCAA
* * *** * *
20278273 AACTCCTTTCAAAAAATTTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
387 AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTT-GAAAATCGTGAAAAATA
* *
20278338 GAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACA
451 GAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
20278403 AGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
516 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
20278468 CGATCCACGGCTTGCCCATCCAGTCTCTCTGGCCGATGTAGTGCCCGCCTGCCCGCCCGCCCACT
581 CGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGATGTAGTGCCCGCCTGCCCGCCCGCACGCT
* *
20278533 CGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCAACTCTAAGATTTAACTGGA-CAAAGG
646 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAACTCTAAGATTTAACTGGATCAGAGG
* * * *
20278597 GTTGCGGTAGCAGGATCGGCAGCACATAGAGGGTGACCC-AGTCGATCCCCGGCTTGCGCATCCC
711 GTTGCGGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCC
* * * * * *
20278661 GCTCGTTTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCA
775 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
20278726 TTCCCAGTCTAAGCATACGAAGTTCATTTCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGC
840 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC-AGGGTTGCGGC
* * * * *
20278790 AGCACATGCTGGCCTTGGGCATGTGGTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGA
* *
20278855 GCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGGCC-AGGGGGTGTG
66 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCGAGGGGGTGTG
* *
20278919 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTGATATTGGCCCCCAATCCCTCATCAAAC
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
20278984 CTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
20279049 AAGTGTCTGAAAT-GAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAA
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
20279113 CTGATTTTTTTTATGCATGGTAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAGAAC
325 CTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAC
*
20279178 TCCTTCCAAAAAAATTTTAAAAAGTCCCAAACCGCAAAAAGTGTTGAAAATCGTGAAAAATAGAA
390 TCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGT-TTGAAAATCGTGAAAAATAGAA
* *
20279243 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGC
454 AATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
20279308 CATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
519 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * * * * *
20279373 TCCAAGGCTTGTGCAGCCCA-TCTTTCTGGCCAACGTAGTGCCCGGCC-GCCCACCCTCCCGTTC
584 TCCACGGCTTGCGCA-TCCAGTCTCTCTGGCCGATGTAGTGCCC-GCCTGCCCGCCCGCACGCTC
* * ***
20279436 ATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAA-TCTAAGATCGGACTGGATC-GAGG
647 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AACTCTAAGATTTAACTGGATCAGAGG
* * * * * *
20279499 GTTGCGGCAGCAGGATCGGTAGCACACAGAGGGGGATCCGATCGATCCCTGGTTTTCGCATCCCG
711 GTTGCGGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
*
20279564 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
776 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
20279629 TCCCAGTCTAA-AAT-C-G-G---A----C---C--AGA-C----C--A--AGGGTTACGGT
841 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAGGGTTGCGGC
* * * ** * * **
20279666 AGCACGTGCTGTGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACAATCATCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGA
* * ** * * * * ****
20279731 GCATCGTCGGAGAACCTGACCGACGATATTGGGGTTTC-AGTGATCGGAGGGCCCA-AATTTGTG
66 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCGAGGGGGTGTG
** * * *** * *** ** * * ** ** **** *
20279794 -GC-CAAAACTCCTTTCGATAAAT-TTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAAT-CGT
130 CGCACATGA-T--GTGCGATGGGTGCT---GGTA-CTTGGCCCTTATATTG-GCCCCCTATCCCT
* * *** * *
20279855 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCA-TTGTA
187 ----CAT--CAAAC----C-TC--G--A-G-AAC-TCAC---ACCCCCTTAA-AGAGCATTTG-A
* * * * * ** * **
20279918 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAAT--CCA
229 -GATTTTAC-AG--GT-----TTGC--TGCCA-GTAGCCAT-T-AA-A-GTGTCTGAAATGGGGA
***** ** * ** * * ** * * * * *
20279980 C-CTACCACCCTATCGATC-CACGA-CTTG--CGCATCCCGTCTCTCTGGCCG-A---TGTAGTG
278 CACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGT-T-TTTAGCTGAATTTTTTTGTG
* ** * *** * * * ***
20280036 CCT-GC--C---CGTCCGCCCG-TCAGCTTGT-TTCGTC-AGTTGGCTTAGG-C-ATACGGAGTT
340 CATGGCAACAAAAATAC-AAGGATCA-C--GTCTAC--CAAGTT---TTGGGCCAAAAC-TCCTT
***** * * * ** ** ** *
20280090 -CATTCCCAGTCT--AAGAT--CAAACCGGACCGAGGGTTGTGATAACAGGATCG-GTAGCATTC
395 CCAAAAAAATTTTAAAAAATCCCAAACC-G-CAAAAAGTT-TG--AA-A--ATCGTG-AAAAAT-
*** * * * * ** * * * ** *
20280149 AGAAGGGGACTCGATCGATCCTCGACTTACGCATCCCGCCCGTCTGGCCGGTTGAACGCCTGTAC
450 AGAAAATGAGTC-ATC-TTGC-C-A-TGAAACTTCACG--TG-AAGG-C--TT-AA-G---GGAC
* * ** * * * *** * ** *
20280214 GC-TCGTTTCGTGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTC-TA-AGCATATG--GA-
499 -CAT--TGT-ATGAATTTAC-AAGCCATAAAAATG-GCATTGGCA--CATAGA-AATATGAAGAT
* ** * ** * ** * ** * * * * *
20280272 GT-TC-ATTCCCAGTCTATGATCGAACCGGAT-CGTGGGTTAGGGTAGTAGGATCAGTAGCACAT
555 GTGCCTAAACCCA-CCTACCACCCTATC-GATCCACGGCTT-GCGCA-T----CCAGT--CTC-T
* * * * *
20280334 AAGGGTGACCCGACCGATCCCCGGCTTGCGCATCCCACACCTCTAGCTGGCTGAGCGCCCGTACG
609 ----CTG----G-CCGAT-----G--T-AG--TGCC-C-GC-CT-GC---C----CGCCCGCACG
* * * *
20280399 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CATAGTCTAAGCATACGGAGTTCATT
644 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCA-A--CT---C-TA---AG---A--
* * * * * * *
20280463 CCTAGTCTAAGATCGGACCAAACCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGGAC
694 --T--T-TAA-CT-GGATC--A--GAGGGTTGCGGCAGCAAGATCGGCAGCACACAGAGGGGGAC
* * *
20280528 CCGA-CTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCGGCACGCTCGTTTC
748 CCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
20280592 ATGAGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
812 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
*
20280657 AGATCGGATCAGACCGAGGGTTGCGGC
877 AGATCGGATCGGACC-AGGGTTGCGGC
* *
20280684 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGAA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGA
* * * * * *
20280749 GCATCTCCGAAAAACTTGACAGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGACGGGGGGTGT
66 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGA--GGGGGTGT
* * *
20280814 GCGCGCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAA
129 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * **
20280879 CCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCCACCAGTAGCCATT
194 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
20280944 AAAGTGTCT-AACATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTT
259 AAAGTGTCTGAA-ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
20281008 AGCTGAATATTTTTGTGCATGCCAA-AGAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
323 AGCTGAATTTTTTTGTGCATGGCAACA-AAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAA
* *
20281072 AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTTGAAAATCATGAAAAATA
387 AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG-TTTGAAAATCGTGAAAAATA
*
20281137 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA-GAATTTACA
451 GAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
20281201 AGCCATAAAAATGGCATTGGCACATAGAAATATGAACATGTGCCTAAACCCACGTACCACCCTAT
516 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * **
20281266 CGATCCACGGCTTGCGCATCCCGTCTCTCAGGCCG--GCA-TG---G--TGAACGCCCGCACGCT
581 CGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGATGTAGTGCCCGCCTGCCCGCCCGCACGCT
* * * **
20281323 TGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAA-AGTAAGA-TTAGACTGGATC-GA
646 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAACTCTAAGATTTA-ACTGGATCAGA
* * * * * ** * * * *
20281385 GGGTTGCAGCAGCAAGATCGACAGCACGCAAAGGGAGACCCGCCCTATCCCTGTCTTGCGAATCC
709 GGGTTGCGGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * *
20281450 CGTCCTTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCGGGGGTTGACTTAGGCATACGGAGTTC
774 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
20281515 ATTCCCAGTCTAAG-AT-C--AG---A----C---CT--GA-C----C-G---AGGGTTACGGC
839 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAGGGTTGCGGC
* * * ** ** *
20281554 AGCACATGCTGGGCTCGAGCATATGCTGGAGCCATATTTTTCTTTGTCGGGGCACCATCCCCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGA
** * * * * *
20281619 GCATCATCGGAGAACCTGATCGGCGGCATTGGGGTTCCGGCGGT-GGGGGGCCGGGGGGGGTATG
66 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GAGGGGGTGTG
* * *
20281683 CACACATGATGGGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAA-
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
20281747 CTCAAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
20281812 AAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAG
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
20281877 CCGAATTTTTTTGTGCAT-GCGAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAA
325 CTGAATTTTTTTGTGCATGGC-AACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAA
* * * * ** * *
20281941 ATCTTTCCGAAAGAATTTTAAAAAATTACAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGA
389 CTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG-TTTGAAAATCGTGAAAAATAGA
* * * *
20282006 AAATAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAACTTACAAG
453 AAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
***
20282071 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
518 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
** * * * *
20282136 ATCCACGGCTTATGCATCCCGTCTCTCTGGTCGATGTAGTG--C-CC-ACCCG--C-C-CGTTCG
583 ATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGATGTAGTGCCCGCCTGCCCGCCCGCACGCTCG
* * * * * * * * * *
20282193 TTTCGTCAGTTCGCTTAGGCATACGGAGTTCATTCCCAGTGTATGA-TCAAATCAGA-CCGAGGG
648 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAACTCTAAGATTTAACT-GGATCAGAGGG
* * * * * * *
20282256 TTGTGGCAACAAGATCGACAGCACGCAGAGGGGGACCCGATCGAACCCCGGCTCGTGCATCCCGC
712 TTGCGGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * * * * * *
20282321 CCCTCTGGCTGCCTAAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGTATACGGAATTCATT
777 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
20282386 CCCAGTCTCAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGAGTTGCGGT
842 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC-CAGGGTTGCGGC
* * * *
20282448 AGCACATGCTGGGCTCGGGCATGTGCCGATGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGA
* *
20282513 GCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-AGGGTGG-GAT
66 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGG-GGTG-T
* * * *
20282576 GCGCACTTTGATGTGTGATGGGTGCTGGTACTTGGCCCTTGTATTGGCACCCTATCCCTCATCAA
129 GCGCAC-ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * *
20282641 TCCTTGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAT
193 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
20282706 TAAAGTGTATGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTT
258 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
20282771 AGCTGAATTTTTTTGTGCA-GTCCAACAAAAATAAAAGGATTACGTCTACCAAGTTTGGGGCCAA
323 AGCTGAATTTTTTTGTGCATG-GCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAA
* * * * * *
20282835 AACTCTTTCCCAAAAAATTTTAAAAAATCTCGAAA-CGTAAAAAGTTTCAAAAATCATGAAAAAT
387 AACTCCTTCCAAAAAAATTTTAAAAAATC-CCAAACCGCAAAAAGTTT-GAAAATCGTGAAAAAT
** *
20282899 AGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTAC
450 AGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
20282964 AAGCCATAAAAATGACATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
515 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
20283029 TCAATCCACGGCTTACGCATCCCA-TCTCTCTG
580 TCGATCCACGGCTTGCGCAT-CCAGTCTCTCTG
20283061 AAAGGCGTAG
Statistics
Matches: 4093, Mismatches: 760, Indels: 644
0.74 0.14 0.12
Matches are distributed among these distances:
866 1 0.00
867 284 0.07
868 333 0.08
869 11 0.00
870 103 0.03
871 2 0.00
872 4 0.00
873 3 0.00
874 4 0.00
875 16 0.00
876 102 0.02
878 1 0.00
879 14 0.00
880 6 0.00
881 1 0.00
882 4 0.00
883 2 0.00
884 2 0.00
885 7 0.00
886 3 0.00
888 1 0.00
889 3 0.00
890 3 0.00
891 1 0.00
892 3 0.00
893 3 0.00
894 108 0.03
895 68 0.02
896 595 0.15
897 415 0.10
898 144 0.04
899 162 0.04
900 7 0.00
901 36 0.01
902 638 0.16
903 22 0.01
904 113 0.03
905 17 0.00
906 10 0.00
907 5 0.00
908 11 0.00
909 10 0.00
910 15 0.00
911 9 0.00
912 15 0.00
913 12 0.00
914 8 0.00
915 12 0.00
916 7 0.00
917 1 0.00
918 2 0.00
919 1 0.00
921 2 0.00
922 42 0.01
923 2 0.00
924 2 0.00
926 9 0.00
927 14 0.00
928 11 0.00
929 10 0.00
930 15 0.00
931 7 0.00
932 3 0.00
933 1 0.00
935 1 0.00
936 1 0.00
938 1 0.00
940 2 0.00
944 2 0.00
945 3 0.00
950 1 0.00
951 3 0.00
952 2 0.00
953 1 0.00
955 3 0.00
956 3 0.00
957 1 0.00
959 2 0.00
960 1 0.00
961 2 0.00
962 1 0.00
963 3 0.00
964 2 0.00
965 9 0.00
966 51 0.01
967 8 0.00
968 9 0.00
969 14 0.00
970 6 0.00
971 5 0.00
972 2 0.00
974 1 0.00
975 4 0.00
976 2 0.00
978 2 0.00
979 2 0.00
980 8 0.00
981 3 0.00
982 10 0.00
983 6 0.00
984 14 0.00
985 14 0.00
986 6 0.00
987 20 0.00
988 6 0.00
989 11 0.00
990 5 0.00
991 12 0.00
992 136 0.03
993 13 0.00
994 8 0.00
995 17 0.00
996 6 0.00
997 8 0.00
999 5 0.00
1000 3 0.00
1001 1 0.00
1002 1 0.00
1003 1 0.00
1004 1 0.00
1006 3 0.00
1007 1 0.00
1008 3 0.00
1009 1 0.00
1011 4 0.00
1013 3 0.00
1015 1 0.00
1016 3 0.00
1017 11 0.00
1018 103 0.03
1019 1 0.00
1020 5 0.00
1021 5 0.00
1022 3 0.00
1023 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGA
GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACT
CCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTGAAAATCGTGAAAAATAGAAAA
TGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCAGTCTCTCTGGCCGATGTAGTGCCCGCCTGCCCGCCCGCACGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAACTCTAAGATTTAACTGGATCAGAGGGTTGC
GGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT
CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAGGGTTGCGGC
Found at i:20280266 original size:26 final size:26
Alignment explanation
Indices: 20280237--20280287 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20280227 GTTGACTTAG
20280237 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20280263 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
20280288 TGATCGAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20280451 original size:26 final size:26
Alignment explanation
Indices: 20280421--20280473 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20280411 GTTGACTTAG
20280421 GCATACAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCATAGTCTAA
* *
20280447 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCATAGTCTAA
20280473 G
1 G
20280474 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCATAGTCTAA
Found at i:20280609 original size:185 final size:184
Alignment explanation
Indices: 20280078--20280678 Score: 729
Period size: 185 Copynumber: 3.3 Consensus size: 184
20280068 GTTGGCTTAG
* * ** * **
20280078 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGATAACAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGTAGGATCGGTA
** * * * * * * * *
20280143 GCATTCAGAAGGGGACTCGA-TCGATCCTCGACTTACGCATCCCGCCCGTCTGGCCGGTTGAACG
66 GCACACAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
20280207 CCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 CCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
* * * * * * *
20280263 GCATATGGAGTTCATTCCCAGTCTATGATCGAACCGGATCGTGGGTTAGGGTAGTAGGATCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGTAGGATCGGTA
* * * * * * *
20280328 GCACATA-AGGGTGACCCGACCGATCCCCGGCTTGCGCATCCCACACCTCTAGCTGGCTGAGCGC
66 GCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
20280392 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCATAGTCTAA
131 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC-CAGTCTAA
* * * *
20280447 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAGGGTTACGGTAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGTAGGATCGGTA
* * *
20280512 GCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGC
66 GCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
20280577 CGGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
131 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TTCCAGTCTAA
* *
20280632 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTT
20280679 GCGGCAGCAC
Statistics
Matches: 351, Mismatches: 61, Indels: 8
0.84 0.15 0.02
Matches are distributed among these distances:
183 1 0.00
184 150 0.43
185 197 0.56
186 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGTAGGATCGGTA
GCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAA
Found at i:20280636 original size:26 final size:26
Alignment explanation
Indices: 20280606--20280658 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20280596 GTTGACTTAG
*
20280606 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20280632 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20280658 G
1 G
20280659 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20283230 original size:26 final size:25
Alignment explanation
Indices: 20283193--20283244 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
20283183 GTTGACTTAG
**
20283193 GCATACGAGTTCATTCCTGGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
20283218 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
20283244 G
1 G
20283245 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:20285563 original size:901 final size:895
Alignment explanation
Indices: 20283111--20285938 Score: 3664
Period size: 899 Copynumber: 3.2 Consensus size: 895
20283101 GTTGGCTTAT
* * * * * * * *
20283111 GGGGACCCGGTCGATCCTCGGCTTGTGCAT-CC-CCCCTTTGGCCGGCTGACCGCCAGCACGCTC
1 GGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGA-TGCCCGCACGCTC
**
20283174 ATTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCTGGTCTAAGCATACAGAGTTCATTCCCA
65 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * *
20283238 GTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCGCAAGCATGTGCTGGTGCC
130 GTCTCAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCGCAAGCATGTGCTGGTGCC
* * * * * * *
20283303 ACATTTTTCTTCATCGGGGCACTACCGCTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGG
195 ACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGACGGAGAACCTGACCGATGGAATTGGG
20283368 G-TT---C---C-----G--A-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
260 GTTTCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
20283418 CTTATATTGGCCCCCTATTCCTCATCAAATCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAG
325 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
** ** * *
20283483 ATTTTACAGGTTTGCTAACAACAGCCTTTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATTGT
390 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
20283547 CACAAAATCTTGTACCCTTCGAGTTTTTGGCTGAATTTTTTTGTGCACT-CCAAAAAAAGTACAA
455 CACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCA-TGCCAAAAAAA-TACAA
* *
20283611 GGATCACGTCTACCAAGTTTGGGGCAAAAAA-TCTTTTTGAAAAAATTTTAAAAAATCCTGAACC
518 GGATCACGTCTACCAAGTTTGGGG-AAAAAACTCATTCTGAAAAAATTTTAAAAAATCC-GAACC
* *
20283675 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTCGCCATGAAACTTCACGTGAA
581 ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAA
* *** *
20283740 GGCTTAGGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACATAGAAATTTGAA
646 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
*
20283804 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGACAGG
711 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG-CAGG
* * *
20283869 CGTAGCCCCGCCCGCCCG--TCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
775 CGTAGTCCCGCCCGCCCGCCTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* *** * ** * *
20283932 AGTCTAAGATTAGACCAGACCAAGGGTTGTGGCCGTAGGATCAGAAGCACGCAAAG
840 AGTCTAAGATTGGACCAGAATGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAAAG
* * * * * *
20283988 GGGGACCCGACCGATCCCC-AGCTTGTGTATCGCGCCCCTC-GGCCGACTGACCGCCAGCACGCT
1 GGGGACCCGATCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGACTGA-TGCCCGCACGCT
* *
20284051 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCC-GATCTAAGCATAC-GAAGTTCATTC
64 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAGCATACAG-AGTTCATTC
*
20284114 CCAGTC-CAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCGCAAGCATGTGCGGG
127 CCAGTCTC-AGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCGCAAGCATGTGCTGG
* * * * * *
20284178 TGCCGCATTTTTCTCCGTCGAGGCACCATCACCGGAGCATC-ACCGGAGAACCTGACCGACGGTA
191 TGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGA-CGGAGAACCTGACCGATGGAA
* * *
20284242 TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACT
255 TTGGGGTTTCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
20284307 TGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTACAGAGCAT
320 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
* * *
20284372 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCAAAATGGGGATACTTTTTT-G
385 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCA
** * *
20284435 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTATTTTGTGTATGCCAAAAAAAA
449 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCC-AAAAAAA
** * * *
20284500 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
513 TACAAGGATCACGTCTACCAAGTTTGGGGAAAAAACTCATTCTGAAAAAATTTTAAAAAATCCGA
* * * *
20284565 AACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
578 ACCA-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACG
* * *
20284630 TGAAGGCTTAAGGGGCCATTGTTTGGATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
642 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
** * * *
20284695 TGAAGATGTGCCTAAACCCACAAACCATCCTATCAATCCACGGCTTGCGCATCCCGTCTCTTTGG
707 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-G
* * * *
20284760 TC-GACGTAGTCCCGCCCGCCCGCCTGCCCGCTCGTTTCGCCAGTTCGCTTAGGCAT-CGGAGTT
771 -CAGGCGTAGTCCCGCCCGCCCGCCT--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
20284823 CATTCCCAGTGTAAGATCGGACCAAAATGAGGGTTCCGATAGCAGGATCGGCAGCACGCAAAG
833 CATTCCCAGTCTAAGATTGGACCAGAATGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAAAG
** * * ** *
20284886 AAGGACCCGATCAATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGGTGAGTGCCCTCACGCTC
1 GGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGA-TGCCCGCACGCTC
* * * * *
20284951 GTTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCCA
65 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * * * **
20285016 GTCTCATATCCA-ATCAGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
130 GTCTCAGAT-CAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCGCAAGCATGTGCTGGTGC
* *
20285080 CACATTTTTCTTC-TCCGGGGCACCATCACCGGAGCATCGACGGGGAACCTGATCGATGGAATTG
194 CACATTTTTCTTCAT-CGGGGCACCATCACCGGAGCATCGACGGAGAACCTGACCGATGGAATTG
* *
20285144 GGGTTTCGACGATCGGGGGTGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTCGAACTTG
258 GGGTTTCGACGATCGGGGG-GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
**
20285209 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTT
322 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
20285274 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
387 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
20285339 GGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATAT
452 GGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAA-AAAAATAC
*
20285404 AAGGATCACGTCTACCAAGTTTAGGGAAAAAACTCATTCTGAAAAAATTTTAAAAAATCTCGAAC
516 AAGGATCACGTCTACCAAGTTTGGGGAAAAAACTCATTCTGAAAAAATTTTAAAAAATC-CGAAC
** * *
20285469 CACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGA
580 CACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGA
20285534 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
645 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * *
20285599 AGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCAAGCTG
710 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-TGCAG
* *
20285664 GCGTAGTGCCCGCCCGCCCGCCT--GCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC
774 GCGTAGT-CCCGCCCGCCCGCCTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
20285727 CTAGTCTAAGATTGGACC-GGATCGAGGGTTGCGGTAGCAGGATTACCAGCATGCAGAG
838 CCAGTCTAAGATTGGACCAGAAT-GAGGGTTGCGGTAGCAGGATCAGCAGCACGCAAAG
* * * * * *
20285785 GGGGACCCGATCGATCCTCGGCTTACGCATCCCGCCCTTCTGGCCGACTGATAGCTCGCATGCTC
1 GGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAT-GCCCGCACGCTC
* * * * *
20285850 ATTTCGTGGGTTGATTTAGGCATACGGAGTTTATTCCCAGTCAAAGCGTATAGAGTTCATTCCCA
65 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * *
20285915 GTCTAAGATCGGATCAGACCGAGG
130 GTCTCAGATCAGACCAGACCGAGG
20285939 TTTGCGGTCT
Statistics
Matches: 1679, Mismatches: 217, Indels: 88
0.85 0.11 0.04
Matches are distributed among these distances:
877 24 0.01
878 49 0.03
879 152 0.09
880 1 0.00
883 1 0.00
886 1 0.00
891 1 0.00
893 9 0.01
894 337 0.20
895 108 0.06
896 2 0.00
897 1 0.00
898 114 0.07
899 399 0.24
900 167 0.10
901 293 0.17
902 20 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGATGCCCGCACGCTCA
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
TCTCAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCGCAAGCATGTGCTGGTGCCA
CATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGACGGAGAACCTGACCGATGGAATTGGGG
TTTCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGAAAAAACTCATTCTGAAAAAATTTTAAAAAATCCGAACCACAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCAGGCGTAGT
CCCGCCCGCCCGCCTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATTGGACCAGAATGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAAAG
Found at i:20286301 original size:26 final size:26
Alignment explanation
Indices: 20286265--20286315 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20286255 TGACTTAGGC
* *
20286265 ATACGGAGTTCATTCTCGGTCTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
20286291 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
20286316 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:20286302 original size:394 final size:390
Alignment explanation
Indices: 20285564--20286318 Score: 993
Period size: 394 Copynumber: 1.9 Consensus size: 390
20285554 TGAATTTACA
* * * *
20285564 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTAT
1 AGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTAT
** * *
20285629 CGATCCACGGCTTGCGCATCCCGTCTCTCAAGCTGGCGTAGTGCCCGCCCGCCCGCCTGCTTGTT
66 CGATCCACGGCTTGCGCATCCCGTCTCTCAAGCCAGCGTAGTGCCCGCCCGCCCACCCGCTTGTT
* * ** * * * **
20285694 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACCGGATCGAGGGTTGC
131 TCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAACAGTTGC
* * * * * * * * *
20285759 GGTAGCAGGATTACCAGCATGCAGAGGGGGACCCGATCGATCCTCGGCTTACGCATCCCGCCCTT
196 GATAGCAAGATGACCAGCATGCAGAAGGGGACCCGACCGATCCCCAGCATACGCATCCCGCCCCT
* * * * *
20285824 CTGGCCGACTGATAGCTCGCATGCTCATTTCGTGGGTTGATTTAGGCATACGGAGTTTATTCCCA
261 CTGGCCGACTGACAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
20285889 GTCAAAGCGTATAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGTTTGCGGTCTGATTT
326 GTCAAAGCGTATAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGTTTGCGGTCTGATTT
*
20285954 AGCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTAT
1 AGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTAT
* **
20286019 CGATCCCCGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGGCCACCCGCCCACCCGCT
66 CGATCCACGGCTTGCGCATCCCGTCTCTCAAGCCAGCGTAGTGCCC-G---CCCGCCCACCCGCT
20286084 TGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCCA-TCTAAGATCAGACCAGACCAACA
127 TGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATT-CCCAGTCTAAGATCAGACCAGACCAACA
* * *
20286148 GTTGCGATAGCAAGATCGA-TAGCACT-CAGAAGGGGACCTGACCGATCCCCAGCATGCGCATCC
191 GTTGCGATAGCAAGAT-GACCAGCA-TGCAGAAGGGGACCCGACCGATCCCCAGCATACGCATCC
20286211 CGCCCCTCTGGCCTG-CTGAGCA-CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
254 CGCCCCTCTGGCC-GACTGA-CAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
20286274 TCATTCTCGGTCTAAG-G-ATACGGAGTTCATTCCCAGTCTAAGATC
317 TCATTCCCAGTCAAAGCGTATA--GAGTTCATTCCCAGTCTAAGATC
20286319 AGACTGGACC
Statistics
Matches: 313, Mismatches: 41, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
390 101 0.32
391 1 0.00
392 3 0.01
393 1 0.00
394 200 0.64
395 7 0.02
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (390 bp):
AGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCAAGCCAGCGTAGTGCCCGCCCGCCCACCCGCTTGTT
TCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAACAGTTGC
GATAGCAAGATGACCAGCATGCAGAAGGGGACCCGACCGATCCCCAGCATACGCATCCCGCCCCT
CTGGCCGACTGACAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCAAAGCGTATAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGTTTGCGGTCTGATTT
Found at i:20287827 original size:896 final size:894
Alignment explanation
Indices: 20285954--20288133 Score: 2923
Period size: 894 Copynumber: 2.4 Consensus size: 894
20285944 GGTCTGATTT
* * *
20285954 AGCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTAT
1 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTAT
* * * *
20286019 CGATCCCCGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGGCCACCCGCCCACCCGCT
66 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGAGTAGTGCCC-G---CCCG--C-CCCGCT
* * * * *
20286084 TGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCCA-TCTAAGATCAGACCAGACCAACA
124 CGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATT-CCCAGTCTAAGATCGGACCAAACGAA-G
* * * * * * ** *
20286148 GTTGCGATAGCAAGATCGATAGCACTCAGAAGGGGACCTGACCGATCCCC-AGCATGCGCATCCC
187 GTTGCGGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGA-CTTGCGCATCCC
* *
20286212 GCCCCTCTGGCCTGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
251 GCCCCTCTGGCCGGCTGAGTACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
20286277 TTCTCGGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTACAGC
316 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTACAGC
* **
20286341 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGA
380 AGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGA
* *
20286406 GCATCACCAGAGAACCTAACCAACGACATTGGGGTTTCGGCGATCGGGGGTGCCGGGGGGTGTGC
445 GCATCACCAGAGAACCTAACCAACGACATTGGGGTTTCGACGATCGGGGGTGCCGGGGAGTGTGC
**
20286471 GCACATGATGTGCGATGGGGGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
510 GCACATGATGTGCGATGGGGGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
20286536 TCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAA
575 TCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAA
**
20286601 AGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTTTTTTTAGC
640 AGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
* **
20286666 TGAATGTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
705 TGAATGTTTTTGTGCATGCCAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGAAAAAACTC
** *
20286731 CTTCCGAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
770 CTTAAGAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAA
**
20286796 CGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
835 CGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
20286856 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACAAACCAGCCTAT
1 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTAT
*
20286921 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGTGTAGT-CCTCGCCCG-CCCGCTCGTTTC
66 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGAGTAGTGCC-CGCCCGCCCCGCTCGTTTC
* * * * *
20286984 GCCAGTTCGCTTAGGCAT-TCGGAGTTCATTCCCAGTGTAAGATCGGACCAAAATGAAGGTTCCG
130 GTCAGTTGGCTTAGGCATAT-GGAGTTCATTCCCAGTCTAAGATCGGACC-AAACGAAGGTTGCG
* *
20287048 GTAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCTCATCCCGCCCCTC
193 GTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTC
* * * * **
20287113 TGGCCGGGTGAGTACCCTCACGTTCA-TTCTGTGGGTTGACTTAGGCAGATAGAGTTCATTCCCA
258 TGGCCGGCTGAGTACCCGCACGCTCATTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
20287177 GTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACAT
322 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACAGCAGCACAT
* * *
20287242 GCTGGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGC
387 GCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCAC
* ****** *
20287307 C-GAGGAACTTGATGGGTGGA-ATTGGGG-TTCTGACGATCAGGGGG-GCCAGGGGAGTGTGCGT
452 CAGA-GAACCT-AACCAACGACATTGGGGTTTC-GACGATC-GGGGGTGCC-GGGGAGTGTGCGC
* *
20287368 ACATGATGTGTGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
512 ACATGATGTGCGATGGGGGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
20287433 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCTATTAAAG
577 GAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAG
*
20287498 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
642 TGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
*
20287563 AAT-TGTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTTGGGAAAAAACTC
707 AATGT-TTTTGTGCATGCCAA-AAAAATAAAAGGATCACGTCTACCAAGTTTGGGGAAAAAACTC
* * **
20287627 CTTAAGAAAAAATTTTAAAAAATCTCGAACCA-CAAAAAGTTTGGAAAATCATAAAAAATAGAAA
770 CTTAAGAAAAAATTTTAAAAAATC-CCAAACAGCAAAAAGTTTCAAAAATCATAAAAAATAGAAA
*
20287691 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
834 ACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
20287752 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
1 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTAT
* *
20287817 CGATCCACGGCTTGCGCATCCCGTCTCTCTAGTTGGAGTAGTGCCCGCCCGCCCACCCGCCTGCT
66 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGAGTAGTGCCCGCCCG-----CC-CC-GCT
* * * * * * * *
20287882 CGTTTTGTCGGTTGGCTTAGGCATATGGAGTCCATTCCTAGTCTAAGATTGGACCGGACCGAGGG
124 CGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-AAACGAAGG
* * * * * ** *
20287947 TTGTGGTAGCAGGATTGCCAGCACGCAGAGGGGGA-CCAGTCGATCCTTGGCTTGCGCATCCCGC
188 TTGCGGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGC
* * * * * *
20288011 CCCTCTGGCTGACT-AATAGCCCGCACGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTTAT
253 CCCTCTGGCCGGCTGAGTA-CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * **
20288075 TCCCACTCAAAGCATACAGAGTTCATTCATAGTCTAAGATCAGATCAGACCGAGGGTTA
317 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTA
20288134 TGATCTGATT
Statistics
Matches: 1118, Mismatches: 133, Indels: 53
0.86 0.10 0.04
Matches are distributed among these distances:
893 13 0.01
894 296 0.26
895 228 0.20
896 255 0.23
897 7 0.01
898 4 0.00
901 3 0.00
902 103 0.09
903 122 0.11
904 86 0.08
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGAGTAGTGCCCGCCCGCCCCGCTCGTTTCG
TCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAAACGAAGGTTGCGGTA
GCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
CCGGCTGAGTACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACAGCAGCACATGCTG
GGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCAGA
GAACCTAACCAACGACATTGGGGTTTCGACGATCGGGGGTGCCGGGGAGTGTGCGCACATGATGT
GCGATGGGGGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAA
TGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTT
GTGCATGCCAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGAAAAAACTCCTTAAGAAAAA
ATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
Found at i:20288492 original size:26 final size:26
Alignment explanation
Indices: 20288462--20288514 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20288452 GTTGACTTAG
*
20288462 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20288488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20288514 G
1 G
20288515 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20288516 original size:402 final size:393
Alignment explanation
Indices: 20287756--20288535 Score: 1001
Period size: 402 Copynumber: 2.0 Consensus size: 393
20287746 TTTACAAGCC
* * *
20287756 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
1 ATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCGAT
*** *
20287821 CCACGGCTTGCGCATCCCGTCTCTCTAGTTGGAGTAGTGCCCGCCCGCCCACCCGCCTGCTCGTT
66 CCACGGCTTGCGCATCCCGTCTCTCTAGCCAGAGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTT
* ** * * * *
20287886 TTGTCGGTTGGCTTAGGCATATGGAGTCCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGT
131 TTGTCGGTTGGCTTAGGCATATGGAGTCCATTCCCAGTCTAAGATCAGACCGGACCAACGATTGC
* * * * * *** *
20287951 GGTAGCAGGATTGCCAGCACGCAGAGGGGGACCAGTCGATCCTTGGCTTGCGCATCCCGCCCCTC
196 GGCAGCAAGATCGACAGCACGCAGAAGGGGACCAGTCGATCCCCAGCTTACGCATCCCGCCCCTC
* * * *
20288016 TGGCTGACTAATAGCCCGCACGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTTATTCCCAC
261 TGGCTGACTAAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAC
* *
20288081 TCAAAGCATACAGAGTTCATTCATAGTCTAAGATCAGATC-AGACCGAGGGTTATGATCTGATTT
326 TCAAAGCATACAGAGTTCATTCACAGTCTAAGATC-GAACTAGACCGAGGGTTATGATCTGATTT
20288145 AGCT
390 AGCT
* *
20288149 ATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCGC-AAACCCACCAACCATCCTATCGA
1 ATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGC-CTAAACCCACCAACCACCCTATCGA
* *
20288213 TCCCCGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTGCCCGCCCGCCTGCCCACCCGCCCAC
65 TCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGAGTAGTGCCCG--C-CC-GCCCACCCG----C
* *
20288278 CCGCTTGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCCA-TCTAAGATCAGACCGGAC
122 CCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTCCATT-CCCAGTCTAAGATCAGACCGGAC
* * *
20288342 CAACGATTGCGGCAGCAAGATCGATAGCACTCAGAAGGGGACCCTGTCGATCCCCAGCTTACGCA
186 CAACGATTGCGGCAGCAAGATCGACAGCACGCAGAAGGGGA-CCAGTCGATCCCCAGCTTACGCA
* *
20288407 TCCCGCCCCTCTGGCCT-ACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
250 TCCCGCCCCTCTGG-CTGACTAAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
** * * * *
20288471 GTTCATTCCCGGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTA
314 GTTCATTCCCACTCAAAGCATACAGAGTTCATTCACAGTCTAAGATCGAACTAGACCGAGGGTTA
20288536 CGGTAGCACA
Statistics
Matches: 328, Mismatches: 46, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
393 96 0.29
394 1 0.00
395 1 0.00
396 2 0.01
397 9 0.03
401 88 0.27
402 129 0.39
403 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.24
Consensus pattern (393 bp):
ATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTAGCCAGAGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTT
TTGTCGGTTGGCTTAGGCATATGGAGTCCATTCCCAGTCTAAGATCAGACCGGACCAACGATTGC
GGCAGCAAGATCGACAGCACGCAGAAGGGGACCAGTCGATCCCCAGCTTACGCATCCCGCCCCTC
TGGCTGACTAAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAC
TCAAAGCATACAGAGTTCATTCACAGTCTAAGATCGAACTAGACCGAGGGTTATGATCTGATTTA
GCT
Found at i:20291145 original size:26 final size:26
Alignment explanation
Indices: 20291115--20291167 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20291105 GTTGACTTAG
20291115 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
*
20291141 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
20291167 G
1 G
20291168 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:20292775 original size:903 final size:900
Alignment explanation
Indices: 20289358--20297262 Score: 5511
Period size: 903 Copynumber: 8.7 Consensus size: 900
20289348 GTTGACTTAG
* * * * * * *
20289358 GCATAC-GAAGTTCATTCCCAGTCTAAGATCGAACCAAACTGAGGGTTACGACAGCACATGCTGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATCCTGG
* * ** * * * *
20289422 GCTCGGGCATGTGCTGGGGCCGTATTTTTCTT---CGTTG-A--AGCACC-ATCA-CTAGAGAAC
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGAGCATCTGGAGAAC
* * * * * * ** *
20289479 CTGACCGACAGAATTAGGGTTCCGATGATC-GGGGGGTTGGGGGTTGTGCGCACATGATGTGCGA
130 CTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
20289543 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTACCCCTCATCAAACCTCAAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
20289608 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
20289673 GACACTTTTTTCTAATGTTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
20289738 ATGCCAAGAAAAATACAGGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
390 ATGCCAAGAAAAATAAAGGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTAGAAAAAATT
* *
20289803 TTAAAAAATCCTGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
455 TTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
20289868 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
20289933 GAATGCAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCAT
585 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
20289998 CCCATCTCTCTGGCTGGCGTAGTGCCTGCCCACCCGCCCGCCTGTCCGCTCGTTTCGTCGGTTGA
650 CCCGTCTCTCTGGCTGGCATAGTGCCCGCCCACCCACCCGCC--T--GCTCGTTTCGTCGGTTG-
* * * * * * *
20290063 G-TTAGGCATACGGAGTTCATTCCCAGTGTAAGATTGGACCGGACCAAGGGTTGCAGCAGTAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGA
** * * * * *
20290127 TTAGCAGCACACAGAGGGGGACCCAG-CTGATCCCCGGCTAGCGCATCCCGCCCCTTTGGCCGAT
775 TCGGCAGCACGCAGAGGGGGACCCAGTC-GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGAG
* ** * * * * *
20290191 TGAGAGCTTGTACGATCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCTTTCCTAGTCTAA
839 TGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
20290253 GCATACAGAGTTCATTCCC-GATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAG-TCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATCCTGG
** ** *
20290317 GCTCGGGCACATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT----TA-C--C-GGAGAAC
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGAGCATCTGGAGAAC
* * *
20290374 CTGATCGGCGGCATTGGGGTTCCGATGATCCGTGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
130 CTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
20290439 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * *
20290504 CCCTTAGAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
20290569 GACACTTTTTTCTAATGTTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
20290634 ATGCCAAGAAAAATACAGGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
390 ATGCCAAGAAAAATAAAGGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTAGAAAAAATT
* *
20290699 TTAAAAAATCCTGAACCATAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
455 TTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
*
20290764 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** * * **
20290829 GCACATAGAAATATGAGGATGTGCCTAAACCTACCTACCACCAAATCGATCCACGGCTTGCGCAT
585 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * ** * * * *
20290894 CTCGTATTTCTGGCCAG-AGTAGTGCCCGCCCACCTA----TCTGCTCGTTTCATCGATTGGCTT
650 CCCGTCTCTCTGGCTGGCA-TAGTGCCCGCCCACCCACCCGCCTGCTCGTTTCGTCGGTTGGCTT
* * * * *
20290954 AGGCATACAGAGTTCATTCCCAATCTAAGGTCAGACCAGACTGAGGGTTACGGCAGCAGGATCGG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGG
* * * * *
20291019 TAGCACGTAGAGGGGGACCC-GATTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCG-GTAGA
779 CAGCACGCAGAGGGGGACCCAG-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGAGT-GA
* * * *
20291082 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAA
842 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
20291141 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGTTTACGGTAGCACATCCTTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATCCTGGG
* * ** * *
20291206 CTTGGGCATGTGCTAGTGCCGTGTTTTTCTTCACCGGAGCACCATCGCCGGGGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCC-GAGCATC-T-GGAGA
*
20291271 ACCTGA-CTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGATG
128 ACCTGATC-GGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGATG
* * ** *
20291335 TGCGATGGGTGCTGGTACTTGGCCCTCATATTAGCCCCCTATCCCTCATCAAACCTTGAGGACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
20291400 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
20291465 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCAG-ATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
20291529 TATGCACGCCAAGAAGAATACAA-GGATCACGTCCAATAAGTTTGGGGCCAAAGCACCTTTCA-A
385 TGTGCATGCCAAGAAAAATA-AAGGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTT-AGA
* * ** *
20291592 AAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCA
448 AAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
*
20291657 TCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** *
20291722 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACAAACCAGCCTATCGATCCACGGCT
578 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * ** * * * *
20291787 TGTGCATCCCGTCTCTCTGG-TCGGCGTAGACCCCG-CTAGCCTGCCCGCCCGTTCGTTTCGCCA
643 TGCGCATCCCGTCTCTCTGGCT-GGCATAGTGCCCGCCCA-CCCACCCGCCTGCTCGTTTCGTCG
* * * * ** * * *
20291850 GTTCGCTTAGGCATTCGGAGTTCATTCCCAGTGTAAGATCGGACCAAAATGAGGGTTTCGGTAGT
706 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
** *
20291915 AGGATCGGCAGCACGCAGAGGGGGACCTGGTCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCC
771 AGGATCGGCAGCACGCAGAGGGGGACCCAGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
* * * * * *
20291980 GGGTGAGTGCCCTCACGCTTGTTTCGGGGGTTGACTTAGGCAGACGGAGTTCATTCCCAGTGTAA
836 GAGTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
20292045 GCATACGGAGTTCATTCCCAGTCTAAGATTC-GATCGGACCGAGGGTTGCAGCAGCACATCCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGA-TCGGATCAGACCGAGGGTTGCGGCAGCACATCCTGG
*
20292109 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCATTGGGG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCC-GAGCATC--TGGAG
* * * *
20292174 AACCTGATCGGTGGAATTGGAGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
127 AACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * **
20292239 CGATGGGTGGTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
20292304 ACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
20292369 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * ** *
20292434 TGCATGCCAACAAAAATAAAGGGATCACGTCTACCAAGTTTTGGGAAAAAACTCCTTAAGAAAAA
387 TGCATGCCAAGAAAAATAAAGGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTAGAAAAA
* ** * *
20292499 ATTTTAAAAAAT-CTCGAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 ATTTTAAAAAATCCT-GAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
20292563 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
20292628 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
20292693 GCATCCCGTCTCTCTAGCTGGCATAGTGCCCGCCCACCCACCCGCCTGCTCGTTTTGTCGGTTGG
646 GCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCACCCACCCGCCTGCTCGTTTCGTCGGTTGG
* * * * *
20292758 CTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGCAAGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGAT
* * * ** * *
20292823 TGCCAGCACGCAGAGGGGGACCCAGCCGATTTCCGACTTGCGCATCTCGCCCCTCTGGCCGACTG
776 CGGCAGCACGCAGAGGGGGACCCAGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGAGTG
* * * * *
20292888 A-TAGCCCGCACGCTCATTTTGTGGGTTGATTTAGGCATACGGAGTTTATT-CCAGTCAAA
841 AGT-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
20292947 GCATACAGAGTTCAGTCCCAGTCCAAGATCGGATCAGACCGAGGGTTGCGATCTGATTTAGC-CA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCG----G---CAGCACA
** ** * * * *** * ** ** *** *
20293011 TAAAAAT-GGCTTTGGCATGAAGAAAT-ATAAAG-ATGTGCCTAAACC-AACCAACCA-C-CCTA
59 T---CCTGGGCTCGGGCATG-TG--CTGGTGCCGCATTTTTCTTCACCGGGGC-ACCATCGCCGA
* ** * * * ** * *** *
20293070 TCGATCCCCG-G--CTTGCGCATC-CCGTC-TCTCTGG--CC-AGCGTAGTGCCCGCCCGCCCGC
117 GC-AT-CTGGAGAACCT--G-ATCGGCGGCAT-TGGGGTTCCGA-CG-A-T--CGGGGGGGCCG-
****** ** * * * ****
20293127 CCACCCG-GC-CACCCGCTTGTTTCG-T-GG-GCT-G-ACTTAGG--C--ATA-CGGAGTTC-AT
170 GGGGGTGTGCGCACATG-ATG-TGCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTA-
* * * ** ** ** * ** * *
20293179 TCCCGGTC-T-AAGCAT-ACGGAGTTCATTCCCAGTCT-AAGATCGAACTG-GA----CCGAGGG
231 TCCC--TCATCAAACCTCA-AGAACTCACACCCCCT-TAAAGAGC-ATTTGAGATTTTAC-AGGT
* **** * * ** * *** *
20293235 TTGCGATAGCACATGCTGGGCTCGGGCATGTG-CT--AGTGCTG-CATTTTTCTTCATCGGGGCA
290 TTGC--T-GC-CA-G-T-AGC-CATTAAAGTGTCTGAAATGGGGACACTTTT-TTCAAATGGTCA
* ** * ** **** * * * * * * *
20293296 C--CATCACCGGAGCATCACCGAAGAACCTGACCAACGGCATTGGGGTTTCG-GCGAT--C-GGG
346 CAAAATC-TTGTA-CA-CTTCG-AG----TTTTTAGCTGAATT---TTTTTGTGC-ATGCCAAGA
******** * ** * * **** * * *****
20293355 GGGGCCGGGGGGTGTGCG-C-ACATGATGTGCAATGGGTGCTGTTACTTGGCCCTTACATTGGCC
399 AAAATAAAGGGAT-CACGTCTAC-T-AAGT---TTGGG-GCCAAAAC-T--CCTTTAGA-AAAAA
** **** * * * * * * ** **
20293418 TCCT-ATCCCTCATCAAACC-TCGAGAA--CTC-ACACCCGCTGAAAGAGCATTTGAGATTTTAC
453 TTTTAAAAAATCCT-GAACCAT-AAAAAGTTTCAAAAATCG-TGAAA-A--A--T-AGA--AAAC
* * ** * * *** ** * * * *
20293478 -AGGT-TTGTTGCCAAT-AGCCATTAAAGTGTCTG-AAATAGGGACACCTT-TTTCAAATGGTCA
507 GA-GTCATCTTGCC-ATGAAAC-TTCACGTGAAGGCTTA-AGGGAC-CATTGTAT-GAAT--TTA
* ** * ** * *** * *** ** **
20293538 CAAAATCTTGTACACTTTG-ATT-TTTTAGCTG-AATATTTTTG-TGCATGCC-AAA-AAAAATA
564 C--AAGC-CATAAAAATGGCATTGGCAT-GCAGAAATA-TGAAGATG--TGCCTAAACCCACCTA
* *** * * *** *** * * ** * * ******* *
20293597 CAAGGATCA-CG-TCTACCAAG-TT-CGGGGCCAAAACTC-CT-TCCGAAAAAAT-TTTAAAAAA
622 CCACCCT-ATCGATCCA-C-GGCTTGCGCATCC-CGTCTCTCTGGCTGGCATAGTGCCCGCCCAC
** *** * * **** *** * * * *
20293655 TTA-CAAACTG-TAAAAAGTTTTGAAAATCATGAAAAATA-GAAAAC-GAG-CCATCTTGCCA-T
683 CCACCCGCCTGCT----CGTTTCGTCGGT--TG--GCTTAGGCATACGGAGTTCA--TTCCCAGT
** ** * ** * ** *
20293714 GAAACTTCACGTGAAGGCTTAAGGGACCGTTTTATGAATTTACAAGCCATAAAAATGGCATTGGC
738 CTAAGAT--CG-G-A--C--CA--GACCG----A-G-GGTTAC--GGC---AGCA-GG-ATCGGC
* *** * * * *
20293779 A-CACAAAAATATGAAGATGTGCCTAAACCCATCTACCATCCTATCGATCCACGGCTTGTGCATC
780 AGCAC--------GCAGA-G-G------GGGA-C--CCA----GTCGATCCCCGACTTGCGCATC
** * * * * * * * *
20293843 CCATCTCTCTGGCTCGAGT-AGGGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTCGGTATACG
822 CCGCCCCTCTGGC-CGAGTGAGTGCCCG--C--ACGCTCGTTTCGTGGGTTGACTTAGGCATACG
20293907 GAGTTCATTCCCAGTCTAA
882 GAGTTCATTCCCAGTCTAA
* * ** * *
20293926 GATCAGATCGGACTAAGGGATCCAGCAGTAGGATCGGTAGCATGTAGAGGGGGACCCGACCGATC
1 G--C--AT---AC--AGAG-T---TCA-T----TC-CCAG--TCTA-A----GA-TCG---GAT-
* * * * * * *
20293991 CTTGGCTCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTACTTTTCTTC
35 C-AGAC-CGAGGGTTGCGGCAGCACATCCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * * ** * *
20294056 GTCGGGGCACCATCATCGGAGCATCATCGGAGAACCTGACCAACGGCATTAGGGTTCTGACGATC
98 ACCGGGGCACCATC-GCCGAGCATC-T-GGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATC
* * *
20294121 GGGGGGGCCGAGGGGGTGTGCCCACATGACGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG
160 GGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
20294186 CCCCCTATCCCTCATCAAACTTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
224 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
20294251 TTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTTAAAATGGTCACAAAATCT
289 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
20294316 TGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGAATGCCAACAAAAATACAA-GGATCACGTC
354 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATA-AAGGGATCACGTC
* * * * * **
20294380 CACCAAGTTTGGGGCCAAAACTCCTTCCA-AAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTT
418 TACTAAGTTTGGGGCCAAAACTCCTT-TAGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTT
* * * * * *
20294444 TCAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCTATTAAACGTCGCGTGAAGGCTTAAGGG
482 TCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * ** *
20294509 ACCATTTTATGAATTTACAAGCCATAAAAATTGCATTGGCACACAGAAATATGAAGATGAGCCTA
547 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * **
20294574 AACCCAACTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCC
612 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCC
* * * *
20294639 G----CCCGCCCG-CT-C-C-TTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
677 GCCCACCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
20294696 GATCAGACCGGATCGAGGGTTTCGGTAGCAGGATCGACAGCACCCAGAGGGGGACCCAGTTGATC
742 GATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGTCGATC
* * * * * * *
20294761 CCCTG-CTTGTGCATCCCGTCCCTCTGGTCG-GCTGAGCGTCGGCATGCTCGTTTCGTGGGTTGA
807 CCC-GACTTGCGCATCCCGCCCCTCTGGCCGAG-TGAGTGCCCGCACGCTCGTTTCGTGGGTTGA
* *
20294824 CTTAGGTATACGAAGTTCATTCCCAGTCTAA
870 CTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
20294855 G-AT-C-GA----A----C---C--AGA-C---T------GAGGGTTGCGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATCCTGGG
* * * ** **
20294894 CTCGAGCATGTGCTGGGGTCGCATTTTTCTTCGTCGAAGCACCAT---C-A-C--C-GGAGAACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGAGCATCTGGAGAACC
* * * * * * *
20294951 TGACCGGCGGCATTAGGGTTCCGGCGATC-AGGGGGCCGGGGGTTGTGCGCGCATCATGTGCGAT
131 TGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
20295015 GGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTACCCCTCATCAAACCTCAAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* *
20295080 CCTTAAAGAGCATTTGAGATTTTATAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
261 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
20295145 ACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
20295210 TGCCAATAAAAATACAA-GGATCAAGTCTAC--------GAGCCAAAAATCCTTCT-GAAAAAAT
391 TGCCAAGAAAAATA-AAGGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTT-TAGAAAAAAT
*
20295265 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
454 TTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
* *
20295330 GATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
20295395 GGCATGCAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTACGCA
584 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
20295460 TCCCATCTCTCTGGCTGGCGTAGTGCCTGCCCACCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTG
649 TCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCACCCACCCG-CC-T--GCTCGTTTCGTCGGTTG
* * * ** *
20295525 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCACCAGTAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGA
** * * *
20295590 TTAGCAGCACACAGAGGGGGACCCAG-CTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG-G
775 TCGGCAGCACGCAGAGGGGGACCCAGTC-GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGAG
* * * * * * *
20295653 TTGAGAGCCTGTACGATCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCTTTCCTAGTCTAA
839 -TGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
20295716 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATCCTGGG
* ** *** *
20295781 CTCAGGCACATGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCAT-----TGC--C-GGAGAACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGAGCATCTGGAGAACC
20295838 TGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
131 TGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
20295903 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
*
20295968 CCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
261 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
20296033 ACACTTTTTTCTAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
20296098 TGCCAAGAAAAATACAAGGGATCACGTCATACGAAGTTTGGGGGCCAAAAAATCTCCTTTCGAAA
391 TGCCAAGAAAAATA-AAGGGATCACGTC-TACTAAGTTT-GGGGCC--AAAA-CTCCTTTAGAAA
*
20296163 AAATTTTAAAAAAAT-CTGAACCAT-AAAAGTTTC--AAATCGGTGAAAAATAGAAAACGAGTCG
450 AAATTTT-AAAAAATCCTGAACCATAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCA
20296224 TCTTGCCATGAAACTTCACGGTGAAGGCTTAAGGCGACCA-TGTAATGAATTTA-AAGCCAGTAA
513 TCTTGCCATGAAACTTCAC-GTGAAGGCTTAAGG-GACCATTGT-ATGAATTTACAAGCCA-TAA
** * * *
20296287 AAATGGCAATT-GCTACACAGGAA-ATGAAAGATGTGCCTAAA-CC-CCTACAACCATAATCGAT
574 AAATGGC-ATTGGC-ATGCAGAAATATG-AAGATGTGCCTAAACCCACCTACCACCCT-ATCGAT
* * * ** ** ** *
20296348 -CAAGGC-TGCGCATTCTCTCGTATTTTCTGGCCAG-AGTAGTGCCCGCCC-TGC-GGCGTCTCG
635 CCACGGCTTGCGCA-TC-C-CGT-CTCTCTGGCTGGCA-TAGTGCCCGCCCACCCACCCGCCT-G
* * * * * * * *
20296408 CTCG-TTCCTCTGTTGGC-TAGGCA-ACAGAAGTTCATTCCCAATCTAGGATCAGATCAGACTGA
694 CTCGTTTCGTCGGTTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
** * * ** * * **
20296470 GGGTTGTGGCAACACAGGATCGGTAGCACATAGGAGGGGGACCGA-T-GATCCCCGGCTTGCTTA
758 GGGTTACGGC-A-GCAGGATCGGCAGCACGCA-GAGGGGGACCCAGTCGATCCCCGACTTGCGCA
* * * **
20296533 TCCCGCCCCTCTGGCAGGGCAGAGCACCCGCACGCTCGTTTCGTGAGGTTGACTTCAGGCCAATA
820 TCCCGCCCCTCTGGCCGAG-TGAGTGCCCGCACGCTCGTTTCGTG-GGTTGACTT-AGG-C-ATA
*
20296598 TGGAGTTCATTCCCAGTCTAA
880 CGGAGTTCATTCCCAGTCTAA
** * ** * * * *
20296619 GCATATGGAGTTCATTCCCAGTCGAAGATCGGATTTGACCGAGGTTTACGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATCCTGGG
* * *** * * *
20296684 CTCAGGCATGTGCTAGTGCCATGTTTTTCTTCACCGGAGCACCATCGCAGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGC-CGAGCATC-T-GGAGA
20296749 ACCTGA-CTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGTGGTGTGCGCACATGATG
128 ACCTGATC-GGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGATG
* * **
20296812 TGCGATGGGTGCTGGTACTTGGCCCTCATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
20296877 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * **
20296941 ATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGCAAAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * * * * * *
20297006 TACGCATGCCAACAAGAATACAA-GGATCACGTCCAATAAGTTTGGGGCCAAAGCACCTTTCGAA
385 TGTGCATGCCAAGAAAAATA-AAGGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTAGAA
* * * *
20297070 AAAATTTTAAAAAATCTTG-ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCAT
449 AAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
* *
20297134 CTTGCCATGAAACTTCACGTCAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
20297199 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAAACCACCTACCACGCTATTGATCCACGGCT
579 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
20297263 AAGATCGGAC
Statistics
Matches: 5462, Mismatches: 1106, Indels: 870
0.73 0.15 0.12
Matches are distributed among these distances:
849 222 0.04
853 8 0.00
855 1 0.00
856 1 0.00
857 227 0.04
858 8 0.00
859 34 0.01
860 2 0.00
861 167 0.03
862 3 0.00
863 1 0.00
864 3 0.00
865 1 0.00
868 1 0.00
870 62 0.01
872 1 0.00
875 1 0.00
877 3 0.00
878 1 0.00
879 1 0.00
885 1 0.00
887 99 0.02
888 488 0.09
889 10 0.00
890 4 0.00
891 1 0.00
892 1 0.00
894 2 0.00
895 111 0.02
896 497 0.09
897 43 0.01
898 54 0.01
899 91 0.02
900 333 0.06
901 281 0.05
902 329 0.06
903 594 0.11
904 343 0.06
905 22 0.00
906 34 0.01
907 55 0.01
908 79 0.01
909 74 0.01
910 28 0.01
911 23 0.00
912 15 0.00
913 23 0.00
914 179 0.03
915 85 0.02
916 6 0.00
917 9 0.00
918 11 0.00
919 1 0.00
920 1 0.00
921 1 0.00
922 3 0.00
923 11 0.00
924 27 0.00
925 8 0.00
926 5 0.00
927 19 0.00
928 22 0.00
929 70 0.01
930 16 0.00
931 5 0.00
932 4 0.00
933 33 0.01
934 1 0.00
935 1 0.00
937 4 0.00
939 6 0.00
940 1 0.00
943 1 0.00
944 1 0.00
945 4 0.00
946 1 0.00
947 2 0.00
948 3 0.00
950 2 0.00
951 4 0.00
952 6 0.00
955 5 0.00
956 5 0.00
957 2 0.00
959 4 0.00
960 2 0.00
961 1 0.00
962 3 0.00
963 1 0.00
964 1 0.00
967 1 0.00
968 5 0.00
970 3 0.00
972 1 0.00
974 31 0.01
975 5 0.00
976 4 0.00
977 8 0.00
978 42 0.01
979 11 0.00
980 5 0.00
981 1 0.00
983 2 0.00
985 9 0.00
986 19 0.00
987 22 0.00
988 16 0.00
989 6 0.00
990 6 0.00
991 18 0.00
992 11 0.00
993 3 0.00
994 1 0.00
996 1 0.00
997 10 0.00
998 10 0.00
999 8 0.00
1000 7 0.00
1001 6 0.00
1002 6 0.00
1003 18 0.00
1004 14 0.00
1005 23 0.00
1006 26 0.00
1007 17 0.00
1008 6 0.00
1009 16 0.00
1010 12 0.00
1011 6 0.00
1012 27 0.00
1013 18 0.00
1014 32 0.01
1015 2 0.00
1017 6 0.00
1018 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATCCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGAGCATCTGGAGAACC
TGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAGAAAAATAAAGGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTAGAAAAAATTT
TAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCTGGCATAGTGCCCGCCCACCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCCAGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGAGTGAGTGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20293200 original size:26 final size:26
Alignment explanation
Indices: 20293164--20293216 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20293154 GCTGACTTAG
*
20293164 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20293190 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20293216 G
1 G
20293217 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20294731 original size:770 final size:769
Alignment explanation
Indices: 20293242--20294707 Score: 2242
Period size: 770 Copynumber: 1.9 Consensus size: 769
20293232 GGGTTGCGAT
*
20293242 AGCACATGCTGGGCTCGGGCATGTGCTAGTGCTGCATTTTTCTTCATCGGGGCACCATCACCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTAGTGCTGCACTTTTCTTCATCGGGGCACCATCACCGGA
* *
20293307 GCATCACCGAAGAACCTGACCAACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGC
66 GCATCACCGAAGAACCTGACCAACGGCATTAGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGC
* * * * *
20293372 GCACATGATGTGCAATGGGTGCTGTTACTTGGCCCTTACATTGGCCTCCTATCCCTCATCAAACC
131 CCACATGACGTACAATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACC
*
20293437 TCGAGAACTCACACCCGCTGAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAA
196 TCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAA
* * *
20293502 AGTGTCTGAAATAGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGC
261 AGTGTCTAAAATAGGGACACCTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
* *
20293567 TGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACT
326 TGAATATTTTTGTGAATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTCGGGGCCAAAACT
* * * * * **
20293632 CCTTCCGAAAAAATTTTAAAAAATTACAAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAA
391 CCTTCCAAAAAAATTTAAAAAAATCACAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
20293697 ACGAGCCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTTTATGAATTTACAAGCC
456 ACGAGCCATCTTGCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCC
* * *
20293762 ATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCATCTACCATCCTATCGAT
521 ATAAAAATGGCATTGGCACACAAAAATATGAAGATGAGCCTAAACCCAACTACCACCCTATCGAT
* * * *
20293827 CCACGGCTTGTGCATCCCATCTCTCTGGCTCGAGTAGGGCCCGCCCGTCCGCTCATTTCGTCGGT
586 CCACGGCTTGCGCATCCCATCTCTCTGGCTCGAGTAGGGCCCGCCCGCCCGCTCATTTCATCGAT
* * * *
20293892 TGGCTTCGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTAAGGGATCCAGCAGTAG
651 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGATCCAGCAGCAG
20293957 GATCGGTAGCATGTAGAGGGGGACCCGACCGATCCTTGGCTCGAGGGTTGTGGC
716 GATCGGTAGCATGTAGAGGGGGACCCGACCGATCCTTGGCTCGAGGGTTGTGGC
* * * *
20294011 AGCACATGCTGGGCTCGGGCATGTGCTGGTG-TCGTACTTTTCTTCGTCGGGGCACCATCATCGG
1 AGCACATGCTGGGCTCGGGCATGTGCTAGTGCT-GCACTTTTCTTCATCGGGGCACCATCACCGG
* *
20294075 AGCATCATCGGAGAACCTGACCAACGGCATTAGGG-TTCTGACGATCGGGGGGGCCGAGGGGGTG
65 AGCATCACCGAAGAACCTGACCAACGGCATTAGGGTTTC-GACGATCGGGGGGGCCG-GGGGGTG
* *
20294139 TGCCCACATGACGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
128 TGCCCACATGACGTACAATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAA
* * * *
20294204 ACTTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCAT
193 ACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCAT
*
20294269 TAAAGTGTCTAAAAT-GAGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
258 TAAAGTGTCTAAAATAG-GGACACCTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
* *
20294333 TAGCTGAAT-TGTTTTGTGAATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCA
322 TAGCTGAATAT-TTTTGTGAATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTCGGGGCCA
* * *
20294397 AAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
386 AAACTCCTTCCAAAAAAATTTAAAAAAATCACAAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * * * * *
20294462 AGAAAAGGAGTCGTCTTGCTATTAAACGTCGCGTGAAGGCTTAAGGGACCATTTTATGAATTTAC
451 AGAAAACGAGCCATCTTGCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTAC
* *
20294527 AAGCCATAAAAATTGCATTGGCACACAGAAATATGAAGATGAGCCTAAACCCAACTACCACCCTA
516 AAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGAGCCTAAACCCAACTACCACCCTA
* * * *
20294592 TCGATCTACGGCTTGCGCATCCCGTCTCTCTGGC-C-AGCATAGTGCCCGCCCGCCCGCTCCTTT
581 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGCTCGAG--TAGGGCCCGCCCGCCCGCTCATTT
*
20294655 CATCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGA
644 CATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
20294708 TCGAGGGTTT
Statistics
Matches: 626, Mismatches: 64, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
768 6 0.01
769 108 0.17
770 512 0.82
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (769 bp):
AGCACATGCTGGGCTCGGGCATGTGCTAGTGCTGCACTTTTCTTCATCGGGGCACCATCACCGGA
GCATCACCGAAGAACCTGACCAACGGCATTAGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGC
CCACATGACGTACAATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAA
AGTGTCTAAAATAGGGACACCTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
TGAATATTTTTGTGAATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTCGGGGCCAAAACT
CCTTCCAAAAAAATTTAAAAAAATCACAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
ACGAGCCATCTTGCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACACAAAAATATGAAGATGAGCCTAAACCCAACTACCACCCTATCGAT
CCACGGCTTGCGCATCCCATCTCTCTGGCTCGAGTAGGGCCCGCCCGCCCGCTCATTTCATCGAT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGATCCAGCAGCAG
GATCGGTAGCATGTAGAGGGGGACCCGACCGATCCTTGGCTCGAGGGTTGTGGC
Found at i:20295726 original size:26 final size:26
Alignment explanation
Indices: 20295690--20295742 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20295680 GTTGACTTAG
* * * *
20295690 GCATATGGAGTTCTTTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20295716 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20295742 G
1 G
20295743 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20299044 original size:26 final size:26
Alignment explanation
Indices: 20299008--20299060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20298998 GTTGACTTAG
* *
20299008 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20299034 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20299060 G
1 G
20299061 ATCTGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20299539 original size:26 final size:26
Alignment explanation
Indices: 20299483--20299539 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
20299473 CTCTTTCCCA
**
20299483 AAAAATTTTAAAAAATCCTGAAACGT
1 AAAAATTTTAAAAAATCCTGAAAAAT
* *
20299509 AAAAATTTT-GAAAATCGTGAAAAAT
1 AAAAATTTTAAAAAATCCTGAAAAAT
20299534 AGAAAA
1 A-AAAA
20299540 CGAGTCATCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.58, C:0.07, G:0.11, T:0.25
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCCTGAAAAAT
Found at i:20300311 original size:895 final size:895
Alignment explanation
Indices: 20297261--20300826 Score: 4630
Period size: 892 Copynumber: 4.0 Consensus size: 895
20297251 TGATCCACGG
* * * * * * * *
20297261 CTAAGATCGGACCGGATCGAGGGTTGCGACAGCACATGCTGGTCTTGGGCATGTGCTGGTGCTGT
1 CTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * ** *
20297326 ATTTTTCTTCGCCGGGGCACCATCGCCCGAGCAACATTCGGAGAACCTGACCGGTGGCATTGGGG
66 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-GCCGGAGAACCTGACCGGCGGCATTGGGG
** * *
20297391 TTCCGGTGATCGGAGGGCCCGGGAGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTT
130 TTCCGACGATCGG-GGGGCC--G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
20297456 GGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGGACTCACA-CCCCTTAAAGAGCATT
191 GGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
* **
20297520 TGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
255 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAA
20297585 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
320 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * ** *
20297650 CAAGGATCACGTCTACCAGGTCTGGGGGAAAAACT-TCTTCCGAAAAAATTTTAAAAAATCCCGA
385 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCT-TTCCCAAAAAATTTTAAAAAATCCCGA
* ** * * * *
20297714 ACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGTGTCTTCCTGCCATGAAACTTCACGT
449 AACGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * * *
20297779 GAAGGCTTAACGGACCATTGTATGAATTTACAAGCTATAAAAATTGCATTGGCATGCAGAAATAT
514 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATAT
* * *
20297844 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATCCTGTCTCTCTGGT
579 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * ** * * *
20297909 CGATGTAGTGCCCTCCCGCCCACCTATTCATTTTGTCGATTGGCTTAGGCATACGGAGTTTC-TT
644 CGACGTAGTGCCCGCCCG-CC-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG-TTCATT
* ** * * *
20297973 CCCAGTCTAAGATCTGACTGGATGAAGGGTTGTGGCAGCAGGATCTGTAGCACGCAGAGGGGGAC
706 CCCAGTCTAAGATCAGACCAGATG-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * *
20298038 TCGACCGATACCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCAGAGCGCCCGCACGCTCATTTCG
770 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCA
* *
20298103 TGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCTGAT
835 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG-T
* * * ** * * * **
20298164 CTAAGATAAGATCGGAGTGAGGGTTACGGCCGCACATGCTGGGCTCGGACATGTGCTGGTGCCAT
1 CTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
20298229 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCGTT---GT
66 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* * * * *
20298291 TCCGACGATC-----G--GGGGGGGTGTGCACAGATGATGTGTGATTGGTGCGGGTACTTGGCCC
131 TCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
20298349 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
196 TTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
20298414 TTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTC
260 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTC
* * *
20298479 ACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACTAGG
325 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * * *
20298544 ATCATGTCTACCAAGTTTGGGGCCAAGACTCATTCCAAAAAAATTTTAAAAAATCCTG-AACTGC
390 ATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCCAAAAAATTTTAAAAAATCCCGAAAC-GT
* * * * * * *
20298608 AAAATGTTTCCAAAATTGTGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTAATGTGAAGG
454 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
20298673 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCATAAAA-ATGAGG
519 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA-AAAATATGAAG
* * * *
20298737 ATGTGCC-AAACTCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGC
583 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * *
20298801 GTAGAGCCCACCCGCCTGCCCGCTTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTC
648 GTAGTG----CCCGCCCGCCC-C-TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * * * *
20298866 CCAGTCTAAGATTGGACCGGACCGATGGTTGTGGCAGCAGGATCGACAGCACGCAAAGGGGGACC
707 CCAGTCTAAGATCAGACCAGA-TGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * * *
20298931 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCACGGACGCTCATTTTAT
771 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCAT
* * *
20298996 AGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAAT
836 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
20299056 CTAAGATCTGATCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
1 CTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * * **
20299121 ATTTTTTTTCGTCGGGGCACCATTGCCAGAGGATCGTCGGAGAACCTGATAGGCGGCATTGGGGT
66 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
*
20299186 TCCGACGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTGTG-TGGGTGCTGGTACTTGGCC
131 TCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
20299249 CTTATATTGGCACCCTATCCCTTATCAAAGCTTAAGAACTCACACCCCCTTAAAGAGCATTTGGG
195 CTTATATTGGC-CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
20299314 ATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGT
259 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGT
20299379 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
324 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * ** *
20299444 GATCATGTCTGCCAAGTTTAGGGTGAAAACTCTTTCCCAAAAAATTTTAAAAAATCCTGAAACGT
389 GATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCCAAAAAATTTTAAAAAATCCCGAAACGT
** * *
20299509 AAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGAGAAGG
454 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
20299573 CTTAAAGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGA
519 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGA
* *
20299638 TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACA
584 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
20299703 TAGTGCCCGCCCG-CCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
649 TAGTGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
20299766 AAGATCAGACCAGACTGAGGGTTACGGCAGTAAGATCGGCAGCATGCAGAGGGGGACCC-AGTCG
714 AAGATCAGACCAGA-TGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCG
* * * * * *
20299830 ATCCCCGGCTTGCGCATCCCACCTCTTTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
777 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
* ** *
20299895 ACTTAGCCATACAAAGTTCATTCCCAGTC-AAGCATATGGAGTTCATTCCCAGT
842 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
20299948 CAAAGATCAGACCAGACCGAGGGTTACGACAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCGC
1 CTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * * *
20300013 ATTTCTCTTCGTTGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCTGCGACATTGGGGT
66 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* * *
20300078 TCTGGCGATCAGGGGGGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGC
131 TCCGACGATC-GGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
20300143 CCTTATATTGCGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGG
194 CCTTATATTG-GCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
20300208 GATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGCCCGAAATGGGGACACTTTTTTCAAATGG
258 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGG
* * *
20300273 TCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCAAGCCAAAAAAAATACAA
323 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * * * *
20300338 GGATCACATCTACCAACTTTGGGGCCAAAACACCTT-CCAAACAAATTTAAAAAAATCCCGAACC
388 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCCAAA-AAATTTTAAAAAATCCCGAAAC
*
20300402 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAA
452 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
20300467 GGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCTTTGGCACGTAAAAACATGAA
517 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAA
* ** * *
20300531 GATGTGCCTAAACCCACCTACCTCTTTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGA
582 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
*
20300596 CGTAGTGCCCGCCCGCACACCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
647 CGTAGTGCCCGCCCGC-C-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * *
20300661 ATCTAAGATCCA-ACCAGATCGAGAGTTGCGATAGCAGGATCGGCAGCACGCAGAGGCGGACCTG
710 GTCTAAGAT-CAGACCAGAT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * *
20300725 ACCGATCCCCGGCATGCGCATCCCGCCCCTCTGGCCGGCTAAGCGACCGCATGCTCGTTTCATGG
773 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGG
*
20300790 GTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAG
838 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20300827 ATCAGACCGG
Statistics
Matches: 2318, Mismatches: 301, Indels: 91
0.86 0.11 0.03
Matches are distributed among these distances:
887 1 0.00
888 134 0.06
889 308 0.13
890 4 0.00
891 6 0.00
892 452 0.19
893 183 0.08
894 23 0.01
895 362 0.16
896 89 0.04
897 8 0.00
898 3 0.00
899 187 0.08
900 117 0.05
901 311 0.13
902 46 0.02
903 84 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
CTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
TCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCCAAAAAATTTTAAAAAATCCCGAAACGTAA
AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
GTGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCAGATGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
Found at i:20301346 original size:26 final size:26
Alignment explanation
Indices: 20301304--20301356 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20301294 GTTGACTTAG
* *
20301304 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGCCTAA
* *
20301330 GCATACGGATTTCATTCCCAGCCTAA
1 GCATACGGAGTTAATTCCCAGCCTAA
20301356 G
1 G
20301357 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGCCTAA
Found at i:20302240 original size:26 final size:26
Alignment explanation
Indices: 20302204--20302256 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20302194 GTTGACTTAG
* *
20302204 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
*
20302230 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
20302256 G
1 G
20302257 ATCCAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:20303132 original size:26 final size:26
Alignment explanation
Indices: 20303103--20303155 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20303093 GTTGACTTAG
20303103 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20303129 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20303155 G
1 G
20303156 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20303222 original size:899 final size:893
Alignment explanation
Indices: 20300869--20304207 Score: 4212
Period size: 899 Copynumber: 3.7 Consensus size: 893
20300859 GTGGTTCTTG
* * *
20300869 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTTAAAAATCGTGA
1 GGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGA
* *
20300934 AAAATAAAAAATGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
66 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
20300999 TTTACAAGCCATAAAAATGGTATTGGCACATAGAAATATGAAGATGTGCCTAAACTCACCTACCA
131 TTTACAAGCCATAAAAATGG-ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * *
20301064 CCCTATTGATCCACGGCTTGCGCATCCCGTCGCTTTGGCCGGCCTAATGCCCACCCGCCCGCTC-
195 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCTCA
* ** *
20301128 GTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTT
260 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
* * * * * *
20301193 GCGGCAGTAGGATCGACAACACGCAGAGGGGGACCTGGTCGATCCCCGACTTGCGCATCTCGCCC
325 GCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
** ** * *
20301258 CTCTGGCCGACTGAGCG-ATGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTAATTCC
390 CTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
* * * *
20301322 TAGTCTAAGCATACGGATTTCATTCCCAGCCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAC
455 TAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAC
* * ** * *
20301387 ATGTTGGGCTCAGGCATGTGCTGGTGGTGCATTTTTCTTC-GTCAGGG---CA-C--C----C-T
520 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGCAT
* * * *
20301440 -GCTGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGCAC
585 CGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCAGGGGGGTGTGCGCAC
* *
20301504 AAGATGT-ACAATGGG-AGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
650 ATGATGTGA-GATGGGTA-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
*
20301567 GAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAG
713 GAGAACT-ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
20301632 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTCTAGCTG
777 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
* * * *
20301697 AATTTTTTTTTTGCATGCCAATAAAAATACTAGGATCATGTCTACCAAGTTT-C
842 AA--TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGC
** * * * * * * * *
20301750 GGGTGAAAACTC-GTTCCAAAAAATTTTTTAAAAATCCCGAACCGTAAAATGTTTCCAAAATTGT
1 -GGCCAAAACTCTTTTCGAAAAAA-TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGT
*
20301814 GAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
64 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* ** * * *
20301879 AATTTACAAGCCATAAAAATGGAATTGGAATGCACAAATATGAAGATATGCCTAAACCCACATAC
129 AATTTACAAGCCATAAAAATGG-ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
20301944 CACCCTATCGATCCACGGCTTGCGTATCCTGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCATT
193 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGT--------G-CC---
*
20302009 CGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
246 CGCCCGCCCG--C--TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * * * * * *
20302074 TGGACCAAACAGAGGGTTGC-GATAGCAGGATTGGCAGCACGTAGAGGGGGACCCGATCAATCCC
307 CAGACCGAACTGAGGGTTGCAG-CAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCC
** * * *
20302138 TAGCTTGCGCATCTCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
371 CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * **
20302203 GGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCCAACCAGA
436 GGCATACAGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * * * * *
20302268 CCCAAGGTTGTGGCAGCACATGCTAGGCTCGAGCATTTGCTGTTGTCGCATTTTTCTTCACT-GG
501 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGG
* * *
20302332 GGCACCAACGTCGGAGCATCGTTGGAGAACCTGACAGACGGCATTGGGGTTCCGGCGATCAGGGG
566 GGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGG
*
20302397 CGCCAGGGGGGTGTGCGCACATGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCC
630 GGCCAGGGGGGTGTGCGCACATGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCC
* * *
20302462 TATCCCTCACCAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
695 TATCCCTCATCAAACCTTGAGAACT-ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
20302527 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
759 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
20302592 ACTTTGAGTTTTTAGCTGAGTTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
824 ACTTTGAGTTTTTAGCTGAATT-TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
20302657 GTTTGC
888 GTTTGC
* * * *
20302663 GGCCAAAACGCTTTTCGAAAAAATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATGA
1 GGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGA
* * * * * * * *
20302728 AAAATAGAAAACGGGTTGTCCTGCCATGAAACCTCACATGAAGGCTTAAGAGACCATTGTATTAA
66 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
20302793 TTTACAAGCAATAAAAATGGCATTGGCACGCAAAAATAT-AGAGATGTACCTAAACCCACCTACC
131 TTTACAAGCCATAAAAATGG-ATTGGCACACAGAAATATGA-AGATGTGCCTAAACCCACCTACC
*
20302857 ACACTATCGATCCACGG-TTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCTGCCTGCCCGCCC
194 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTG-C--CC-GCCCGCCC
* * * *
20302921 GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGAACTGA
255 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGA
** * * *
20302986 GGGTTGCAGCAGCAATATCGGCAGCATGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC
320 GGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC
* * * *
20303051 CGCCCCTTTGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
385 CGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
* * * * *
20303116 ATTCCCAGTCTAAGCATACAGATTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAAC
450 ATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGAC
* * * *
20303181 AGCACATGCTGGGCTTGGGCATGTGTTGGTGCCGTATTTTTCTTCA-TCGGGGCACCATCGTCGA
515 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGG
* * * *
20303245 AGCATCGCCGGAGAACCTGACCGACGGCATTGCGGTTCCAGCGATCGGGGGGGCCAGGGGGGTTT
580 AGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCAGGGGGGTGT
* *
20303310 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
644 GCGCACATGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
20303375 CCTCGAGAACT-CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTA
709 CCTTGAGAACTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
20303439 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAG
774 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
* *
20303504 CTGAATGTTTTTATGCATGCGAACAAAAATACAAGGATCACGTCTACCACGTTTG-
839 CTGAAT-TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGC
* * * * * **
20303559 GAGCCAAAACTCTTTCCGAAAAAATTTTAAAACATCTCGAACCGTAAAAAGTTTTGAAAATCGTG
1 G-GCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTG
* *
20303624 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGA
65 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
20303689 ATTTACAAGCCATAAAAATAGGGTTGGCACATAGAAATATGAAGATGTCCCTAAACCCACCTACC
130 ATTTACAAGCCATAAAAAT-GGATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * **
20303754 ACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTAGCCGGCTTAGTGCCCGCCCATCCGCTC
194 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCTC
* * * * *
20303819 ATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGATGGT
259 ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGT
* * * * * *
20303884 TGCAGTAGTAGGATCGACAGCACACAAAAGGTGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC
324 TGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC
* * * *
20303949 CCTCTGGCCGACTGAGCGCCCGCACGGTCATTTTTGTGGGTTGACTTAGGCATACGGAGTTCATT
389 CCTCTGGCCGACTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
* * * * * *
20304014 TCTAGTCTAAGCATACAGAGTTAATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGA
453 CCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGC
* *
20304079 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACT-GGGGCTCCATCGTCGGAGC
518 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGC
* * * * ** * *
20304143 ATCGCAGGAAAACCTGACCGATGGCATTTGGGTTCCGATGATCGGAGGGAACCGGGGGGGTGTGC
583 ATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG-GGG-GCCAGGGGGGTGTGC
20304208 CTAAACCCAC
Statistics
Matches: 2122, Mismatches: 281, Indels: 94
0.85 0.11 0.04
Matches are distributed among these distances:
881 9 0.00
882 201 0.09
890 1 0.00
891 2 0.00
894 155 0.07
895 186 0.09
896 15 0.01
897 346 0.16
898 36 0.02
899 524 0.25
900 134 0.06
901 2 0.00
902 1 0.00
903 14 0.01
904 1 0.00
905 1 0.00
906 1 0.00
910 1 0.00
911 32 0.02
912 246 0.12
913 212 0.10
914 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGA
AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCTCAT
TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTG
CAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCC
TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCT
AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGCATC
GCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCAGGGGGGTGTGCGCACA
TGATGTGAGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
AACTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGC
Found at i:20304034 original size:26 final size:26
Alignment explanation
Indices: 20303998--20304050 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20303988 GTTGACTTAG
* * * *
20303998 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
20304024 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
20304050 G
1 G
20304051 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:20304512 original size:26 final size:26
Alignment explanation
Indices: 20304482--20304534 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20304472 GTTGACTTAG
20304482 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20304508 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20304534 G
1 G
20304535 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20305419 original size:26 final size:26
Alignment explanation
Indices: 20305382--20305434 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20305372 GTTGACATAG
* *
20305382 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
20305408 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20305434 G
1 G
20305435 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:20307214 original size:26 final size:26
Alignment explanation
Indices: 20307184--20307236 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20307174 GTTGACTTAG
*
20307184 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
20307210 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20307236 G
1 G
20307237 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20307383 original size:904 final size:903
Alignment explanation
Indices: 20304203--20312324 Score: 8496
Period size: 900 Copynumber: 9.0 Consensus size: 903
20304193 ACCGGGGGGG
*
20304203 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACG
1 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* **
20304268 TAGTGCCCGCCTGCCTATCCGCCCGCCCGCCCATTCGTTTCGTCGGTTGGCTTAGGCATACCAAG
66 TAGTGCCCG-C--CC--GCCGCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** * * ** * *
20304333 TTCATTCCCAGTCTAAGATCCGACCGGACTGTGGGCTACCACAGCAGGATCGACAGCATGCAGAG
122 TTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * * * *
20304398 AGGGACCCAGTCTATCCCCGGCTTACGCATTCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
187 GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
20304463 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
252 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
20304528 GTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGGCTCGGGCAAGTGCTGGTGCC
317 GTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * *
20304593 GCATTTTTCTTC-ACTGGGGCACCATCGTCGGAGCATCGCCGGAGATA-CTAACCGACGGCATTT
382 GCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGA-ACCTGACCGACGGCATTG
* * *
20304656 GGGTTCCAACGATC-GGGGGGCCGGGGGGATGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
445 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
20304720 GGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATT
510 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
20304783 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACTCTTTTTTCAAA
575 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAA
* *
20304848 TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATA
640 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
20304913 CAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCTGAGAAAATTTTAAAATATCCCGAA
705 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
*
20304978 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
770 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
20305043 AAAGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
835 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
20305108 AAGA
900 AAGA
* * * *
20305112 TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGGCA
1 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* *** * * *
20305177 TAGTGCCCGCCCGCCCGGCCATGCGCTCGTGTCGTCGGTGGGCTTAGGCATACAGAGTTCATTCC
66 TAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * ** * * **
20305242 CAATCTAAGATCGGACCAAACCGAGGGTTGCGGCAGTAGGATCGATAGCACGCAGAGGGGGACCC
130 CAGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * * **
20305307 GACCGATCCTCAGCTTGCGCATCCCG-CCCTCTAGCTTGCTGAGCGCCCGCACGCTCGTTTCGTG
195 GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * *
20305371 GGTTGACATAGGCATACGAAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
260 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * **
20305436 TCGGACCAGACTGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTT
325 TTGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* **
20305501 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGGT
390 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * * * *
20305566 GATCGGAGGGG-CTGGGGGGTGTGCGCATATAATGTGCGATGGGTGCTTGTACTTGGCCCTTATA
455 GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
20305630 TTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
520 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
20305695 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
585 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAA
* *
20305760 ATCTTGTACAC-TGGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
650 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
20305824 GTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCAG-AAAAG
715 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-GCAAAAA
*
20305888 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAA
779 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
20305953 GGGACCATTGTATCAATTTACAAGCCATAAAAATGGAATTGGCAGGCAAAAATATGAAGA
844 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
20306013 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGACGACG
1 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * *
20306078 TAGTGCCCG--C-CCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCA
66 TAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * *
20306140 AGTCTAAGATCAGACGGGATCGAAGGATGCAGG-AGTAGGATTGGCAGCACGCAGAGGGGGACCC
131 AGTCTAAGATCAGACCGGACCGAAGGTTGC-GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * *
20306204 AGCCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTG
195 GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
** *
20306269 GGTTGACTTAGGCACGCGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
260 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** * *
20306334 TAGGGCCAGACCAAGGGTTACAACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTCT
325 TTGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * * *
20306399 CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGACCCTGACCGGCGGCTTTGGGGTTTCAAC
390 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* *
20306464 GATCGGGGGGGCCGGGGGGGTGAGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
455 GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
20306529 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAATAGCATTTCAGATTTTA
520 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
20306594 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAA
585 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAA
* * * * * * *
20306659 ATCTTGTACACTTCGAGTTTCTAGATGATTTTTTTTTTGCATGCCAAAAAAAATACAGGGATCCC
650 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * **
20306724 GTTTACCAAGTTTGGGTCCAAAACCCCTTCTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAG
715 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
* * *
20306789 TTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTAACGTGAAGGCTTAAG
780 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
20306854 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
845 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
20306913 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGACG
1 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
*
20306978 TAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
66 TAGTGCCCGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * ** **
20307043 CAGTCTAAGATCAAACCGGACCGAAGGTTGTGGTAGCAGGATCGGTAGCACACAGAGGCAGATTC
130 CAGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * * * *
20307108 GGTCGATCGCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCATG
195 GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
20307173 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAATCTAAGA
260 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** ** * **
20307238 TTGGACTGGACCGAGGGTTACCACAGCACATACTGGGCTCGACCATGTG-TCGGTGCCGCATTTT
325 TTGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTT
* * ** *
20307302 TCTTCGTCGAGGCGCCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGC
389 TCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
20307367 CGGTCGGGGGGGCCGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTCCTTGGCCCTTAT
454 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
20307432 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
519 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * *
20307497 ACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTAAAATGGCGACACTTTTTTCAAATGGTCACAA
584 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAA
* *
20307562 AATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCA
649 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* ** * * * *
20307627 CGTCTACCATGTTTGGGGTGAAAAGTCATTCCGAAAAAATTTAAAAAAATCCCGAACCACAAAAA
714 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
** *
20307692 GTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
779 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
20307757 GGGACCACTGTA-GAATTTACAAGCCATAAAAATAGAATTGGCATGCAGAAATATGAAGA
844 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
20307816 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCTGTCTCTCTGGCCGACG
1 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * * *
20307881 TAGTGGCCGCCCGTCCGCCTGGCCGCTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCC
66 TAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * ** * *
20307946 CAGTCTAAGATCAGACTAGACTGAGGGTTATGGCAGCAGGATTGGCAGCATGCAGAGGGGGACCC
130 CAGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * * * * * *
20308011 GACTGATCTCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGTACGCTCGTTTCATG
195 GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
20308076 GGTTGACTTAGGCATACGGAG----TT--CA-T-T---C---C------CA-----A-TCTAAGA
260 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* *
20308115 TTGGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTCT
325 TTGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* ** * * **
20308180 ATTCGTCGGGGCA-C--CGTC---G--T--T-GGAGAACCTGACCGGTGACATTCGGGTT-TTAG
390 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-
* *
20308233 CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAATTTGGCCCTTAT
454 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
20308297 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTT
519 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
20308362 ATAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGCACACTTCTTTCAAATGGTCACAA
584 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAA
* *
20308427 AATCTTGTACACTTTC-AGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAAAAAAAATACAAGG
649 AATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC---AACAAAAATACAAGG
* * * *
20308491 ATGACGTCTACCAAGTTTGGGGCCAAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT
710 ATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
* * * * * * * * *
20308556 AAAAAGTTTCAAAAATTATGAACCAATCGAAAATGAGTCCATTTTACCATTAAACTTCACATGAA
774 AAAAAGTTTCAAAAATCATGAA-AAATAGAAAACGAGT-CGTCTTGCCATGAAACTTCACGTGAA
* ** * *
20308621 GGATTAAGGGGACCATTGTATGAA-TTACAAAGAGATAAAATTGGGCATTGGCTTGCATGAAATA
837 GGCTTAA-GGGACCATTGTATGAATTTAC-AAGCCATAAAAAT-GGCATTGGCATGCA-GAAATA
20308685 T-AAGA
898 TGAAGA
* * *
20308690 TGTGGCTTAAACCC-CATCACCACCCTACTCGATCCACGGCTTGCGCATATCCGTCTCTCTGGCC
1 TGT-GCCTAAACCCACCT-ACCACCCTA-TCGATCCACGGCTTGCGCAT-CCCGTCTCTCTGGCC
* * * *
20308754 GGCATAGGTGGCCC-CCCG--G-CTGCCCGCTCGTTCCGTCGGTTGGCTTTAGGCATACGGAGTT
62 GACGTA-GT-GCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGC-TTAGGCATACGGAGTT
* *
20308815 C-TTCCCAGTCTAAGATCCAGACCAGCACC-ACAGGGTTGCGGCAGCAGGATCGGTAGCACGCAG
124 CATTCCCAGTCTAAGAT-CAGACC-GGACCGA-A-GGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * * *
20308878 AGGGGGACCCGGCCGCCTCCCCGGCTT---AATTCCCGCCCCTCTGGTCGGTTGAGCGCCCGCAC
185 AGGGGGACCCGGCCG-ATCCCCGGCTTGCGCA-TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
20308940 GCTTGTTTCCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATATGAAGTTCAT
248 GCTCGTTT-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * * *
20309004 TACCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGTAGCACATGCTAGTCTCGGCCATGTGCTG
312 TCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * *
20309069 ATGCCGTATTTGTCTTCGTCGTGGCACCA---TC---G---C--CGGAGAACTTGACCGACGACA
377 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCA
** * * ** *
20309123 TTACGGTTTCGGCGATCGACGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTA
442 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
20309187 TTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGC
507 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
20309252 ATTTGAGATTGTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTC
572 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTC
* * *
20309317 AAATGGTCACAAAATCTTGTACACTTCGAGCTTCTAGCTGAATTTTTTTGTTCATGCCAACAAAA
637 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
20309382 ATACAAGGA-CACGTCTACCAAGTTTGGAGTCC-AAACCCCTTTCGAAAAAATTTTAAAAAATCT
702 ATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
20309445 CGAACCGTAAAAAGTGTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
766 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
**
20309510 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
831 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
20309575 TATGATGA
896 TATGAAGA
* * * *
20309583 TGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGATG
1 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* ** * *
20309648 TAGTGCCCG--C-CTGCCCATCCGCTCGTTTCGTCGGTTGGCTTAGGCATGCGAAGTTCATTCCC
66 TAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * *
20309710 AGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGAGGGACACA
131 AGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * *
20309775 GCCGATCCCCGACTTAG-GCATCCCGCCTCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTG
196 GCCGATCCCCGGCTT-GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * *** *
20309839 GGTTCACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCATATAAAGTTCTTTCCCAGTCTAAGA
260 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * * * * *** *
20309904 TCAGATC-GAATCAAGGTTTACGGCATGCAGGATCGATAGCACGTAGAGGGGGACCCAACTGATC
325 TTGGACCAG-ACCGAGGGTTACGGCA-GC---A-C-AT-GC-TG-GGCTCGGG---C-A-TG-TG
** *** * * *
20309968 CTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTGCACGC-TCGTTTCGTGGGTTGAC
374 CT-GG-TGCCGCAT-----TTTTCT--TCGTC-G-G-G---GCAC-CATCG--TC---GG-AG-C
* * ** * ** * * * * * * **** * *
20310032 TTAGGCATACGGAGTTCATTCCCAGTCAAGAATATGGAGTTCATTG-CCAGTCTAAAATTGGACT
416 --A-TCGT-CGGAGAACCTGACC-GAC-GGCAT-TGGGGTTC--CGACGA-TC---GGGGGGGCC
* * * * * * * * * **
20310096 GGATCGAGGGT-TGCGGCAGCA-CATGCTGGGCT-CGAGCAT-GT-GTTGGTGCCGTAT-TTTTC
468 GG---GGGGGTGTGC-GCA-CATGATG-TGCGATGGGTGC-TGGTACTTGG-CCCTTATATTGGC
** * * * * * ** *** ** * *
20310155 TTAGCC-AGGGCAC-CATC--GCC-GGAGCATCGTCGGA-GAACTTGAGTGGCGGCA-TTGAGGT
525 --CCCCTA--TCCCTCATCAAACCTCGAG-AAC-TCACACCCCCTT-A-AAG-AGCATTTGAGAT
* * * ** *
20310213 TTGGGTGATCGGGGGGCCATGGGGTGTGC-GCACATGATGTGCGA-T-GGGTGTC-GATACTTGG
581 TT---T-A---------CA---GGTTTGCTGC-CA-G-T-AGCCATTAAAGTGTCTGA-A-ATGG
* * * *
20310274 TTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
624 ---G--G--A-CA--C-TT---CT-T-T--CA-----A-A-TG----------GTCACAAAATCT
* * *
20310339 TGTACAGTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
654 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * ** * *
20310404 ACCATGTTTGCGGCGTAAACTCCTTCCGAAAAAATTTTAACAAATCCCGAACTGCAAAAAGTTTC
719 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* *
20310469 AAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGAC
784 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* ***
20310534 CATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
849 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * *
20310589 TGTGCCTAAACCCACCTATCACCGTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCG
1 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
**
20310654 TAGT----G--C-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCC
66 TAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * *
20310712 AGTCTAAGAT-TGAACCAGACC-AAGGGTTGCGGTAGTAGGATCGACAACACACAGAAGGGGACC
131 AGTCTAAGATCAG-ACCGGACCGAA-GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * * * * * * * *
20310775 CGGCCGATCACTGGCTTGCGCATCCTGGCCTTCTGGTCGGTTGACCGCCTGCACGCTCATTTCGT
194 CGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
** * *
20310840 GCTTTGACTTAGACATACGGAGTTCATTCCCTA-TCTAAGCATATGGAGTTCATTCCCAGTCTAA
259 GGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *
20310904 GATTGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTAGGGCATGTGCTAGTGCCACATTT
323 GATTGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * *
20310969 TTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCGGAGAACTTGACCGGCAGCATTGGGGTTCCG
388 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * *
20311034 ACGATCAGGGGGGCCGGTGGGGGTGTGCGTACATGATGTGCGATGGGTGCGGGTACTTGGCCCTT
453 ACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
20311099 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
517 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* ** * *
20311164 TTACAGGTTTCCTGCCAAAAGCCATTACAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
582 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCAC
* * * *
20311229 AAAATCTTGTACACTTTGAGTTTCTAGCTGAATTTTTTTATGCATGCCAATAAAAATACAAGGAT
647 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
20311294 CACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAA-TTAAAAAAATCCCAAACCGCAAA
712 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
** * * *
20311358 AAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTT
777 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
20311423 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
842 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * ** * * **
20311485 TGTGCCTAAACTCACCTACCGCCCAATCGATCCACGATTTACGCATCCCGTCTCTCTGGTCGGGG
1 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * * * * * * ** *
20311550 TAGTGCCCG--C-CTGCCTGCCCACTCATTTCATCAGTTGGCTTAGGTATACAAAGTTCATTCTC
66 TAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * *
20311612 AGTCTAAGATCGGACCGGACC-AAGGGTTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCC
131 AGTCTAAGATCAGACCGGACCGAA-GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * *
20311676 GGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTAAGCGCCAGCACGCTCGTTTCGTG
195 GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
20311741 GGTCGACTTAGGCATACGGAGTTCATTCCAAG--T---C-TA---AG---A-T--C-G-----GA
260 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
20311785 TT-G---A-ACCGAGGGTTGCGGCAGCACATACTGGGCTTGGGCATGTGCTGGTGCCACATTTTT
325 TTGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
** * ** * * ** *
20311845 CTTCACCGGGGCACGATCGTCAAAACAACGTCGGAGAACCTGACTAACAGCATTGGGGTTCCG--
390 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
** * *
20311908 G-T------GATCGGGGGGGTGTGCGCACATGATGTGCGACGGGTGCTGATACTTGGCCCTTATA
455 GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
20311966 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
520 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * * *
20312031 CAGGTTTGTTGCCAGTAACCATTAAAGTGACTGAAATGGGGATACTT-TTATCAAATTGTCCCAA
585 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTT-TCAAATGGTCACAA
* *
20312095 AATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATTCCAACAAAAATACAAGGATCA
649 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* **** *
20312160 TGTCTACCAAGTTTGGGGCCAAAACTCC-TCCGAAAAAATTTTAAAAAATCCCGAACTATGAAGA
714 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
*
20312224 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
779 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
** **
20312289 CAGAAAATTGTATGAATTTACAAGCCATAAAAATGG
844 GGGACCATTGTATGAATTTACAAGCCATAAAAATGG
20312325 TGTGCGTATA
Statistics
Matches: 6068, Mismatches: 880, Indels: 575
0.81 0.12 0.08
Matches are distributed among these distances:
863 12 0.00
864 357 0.06
865 213 0.04
866 39 0.01
867 1 0.00
868 34 0.01
869 52 0.01
870 12 0.00
871 29 0.00
872 16 0.00
873 13 0.00
874 162 0.03
875 50 0.01
876 78 0.01
877 128 0.02
878 17 0.00
879 7 0.00
880 2 0.00
882 1 0.00
883 3 0.00
884 2 0.00
885 10 0.00
886 46 0.01
887 114 0.02
888 31 0.01
889 39 0.01
890 15 0.00
891 23 0.00
892 27 0.00
893 20 0.00
894 30 0.00
895 33 0.01
896 213 0.04
897 273 0.04
898 232 0.04
899 206 0.03
900 727 0.12
901 438 0.07
902 427 0.07
903 298 0.05
904 684 0.11
905 7 0.00
906 2 0.00
907 1 0.00
908 2 0.00
909 73 0.01
911 3 0.00
912 1 0.00
914 2 0.00
916 1 0.00
917 5 0.00
918 2 0.00
921 2 0.00
922 3 0.00
924 1 0.00
925 1 0.00
927 1 0.00
929 2 0.00
931 3 0.00
932 4 0.00
933 6 0.00
934 9 0.00
935 2 0.00
936 1 0.00
937 2 0.00
939 9 0.00
940 2 0.00
941 2 0.00
942 4 0.00
943 2 0.00
944 3 0.00
946 1 0.00
947 5 0.00
948 1 0.00
949 8 0.00
950 37 0.01
951 50 0.01
952 37 0.01
953 14 0.00
955 1 0.00
956 4 0.00
957 2 0.00
958 7 0.00
959 4 0.00
960 2 0.00
961 9 0.00
962 1 0.00
963 1 0.00
965 2 0.00
966 1 0.00
967 4 0.00
968 10 0.00
969 7 0.00
970 7 0.00
971 4 0.00
972 7 0.00
973 1 0.00
975 2 0.00
976 1 0.00
977 1 0.00
978 4 0.00
980 4 0.00
981 2 0.00
984 1 0.00
985 6 0.00
986 2 0.00
987 3 0.00
988 3 0.00
989 1 0.00
990 1 0.00
993 5 0.00
994 2 0.00
995 3 0.00
996 2 0.00
997 1 0.00
998 1 0.00
1001 5 0.00
1002 219 0.04
1003 2 0.00
1005 65 0.01
1006 233 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
TAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
TGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
Found at i:20310018 original size:186 final size:184
Alignment explanation
Indices: 20309698--20310086 Score: 519
Period size: 186 Copynumber: 2.1 Consensus size: 184
20309688 TAGGCATGCG
* * *
20309698 AAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
1 AAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGGCAGCAGGATCGATAGCACGCA
* * * *
20309763 GAGAGGGACACAGCCGATCCCCGACTTAGGCATCCCGCCTCTCTGGCCGGTTGAGCGCCCGCACG
66 GAGAGGGACACAACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
20309828 CTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCATATA
131 CTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCAAGTC-AAGAATATA
* * *
20309883 AAGTTCTTTCCCAGTCTAAGATCAGATC-GAATCAAGGTTTACGGCATGCAGGATCGATAGCACG
1 AAGTTCATTCCCAGTCTAAGATCAGACCAG-ATCAAGGGTTACGGCA-GCAGGATCGATAGCACG
* * * * * * * *
20309947 TAGAGGGGGACCCAACTGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTGCA
64 CAGAGAGGGACACAACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
20310012 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAGAATATG
129 CGCTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCAAGTCAAGAATATA
* *
20310068 GAGTTCATTGCCAGTCTAA
1 AAGTTCATTCCCAGTCTAA
20310087 AATTGGACTG
Statistics
Matches: 176, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
184 1 0.01
185 62 0.35
186 113 0.64
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (184 bp):
AAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGGCAGCAGGATCGATAGCACGCA
GAGAGGGACACAACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCAAGTCAAGAATATA
Found at i:20310889 original size:26 final size:26
Alignment explanation
Indices: 20310853--20310904 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20310843 TTGACTTAGA
20310853 CATACGGAGTTCATTCCCTA-TCTAAG
1 CATACGGAGTTCATTCCC-AGTCTAAG
*
20310879 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
20310905 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:20312670 original size:404 final size:404
Alignment explanation
Indices: 20311919--20312728 Score: 1176
Period size: 404 Copynumber: 2.0 Consensus size: 404
20311909 TGATCGGGGG
20311919 GGTGTGCGCACATGATGTGCGACGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGACGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
20311984 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAA
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAA
* * * * * * *
20312049 CCATTAAAGTGACTGAAATGGGGATACTTTTATCAAATTGTCCCAAAATCTTGTACACTTCGAGT
131 CAATTAAAGTGACTAAAATGGGAACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCGACT
* * *
20312114 TTTTAGCTGAATATTTTTGTGCATTCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
196 TTTTAGCTGAATATTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
20312179 CAAAACTCCTCCGAAAAAATTTTAAAAAATCCCGAACTATGAAGAGTTTCAAAAATCGTGAAAAA
261 CAAAACTCCTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAGAGTTTCAAAAATCATGAAAAA
*
20312244 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACAGAAAATTGTATGAATTTA
326 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACAGAAAATTCTATGAATTTA
20312309 CAAGCCATAAAAAT
391 CAAGCCATAAAAAT
* * * * *
20312323 GGTGTGCGTATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGACGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCA
** * *
20312388 TCAAACCTTTAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAA
* * **** *
20312452 CAATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTTTGGTTTGACT
131 CAATTAAAGTGACTAAAATGGGAACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCGACT
* *
20312517 TTTTAGCTGAATGTTTTTCTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
196 TTTTAGCTGAATATTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * ** *
20312582 CAAAACTCCTTCCGAAGAAATTTTAAAAAATCCTGAACCGCA-AAAG-GTTTTGAAAATTATGAA
261 CAAAACTCC-TCCGAAAAAATTTTAAAAAATCCCGAA-C-CATAAAGAGTTTCAAAAATCATGAA
* * ** **
20312645 AAATAGGAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAAT
323 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACAGAAAATTCTATGAAT
20312710 TTACAAGCCATAAAAAT
388 TTACAAGCCATAAAAAT
20312727 GG
1 GG
20312729 CATTGGCATG
Statistics
Matches: 359, Mismatches: 44, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
403 161 0.45
404 193 0.54
405 4 0.01
406 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (404 bp):
GGTGTGCGCACATGATGTGCGACGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAA
CAATTAAAGTGACTAAAATGGGAACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCGACT
TTTTAGCTGAATATTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAGAGTTTCAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACAGAAAATTCTATGAATTTA
CAAGCCATAAAAAT
Found at i:20313054 original size:26 final size:26
Alignment explanation
Indices: 20313024--20313076 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20313014 GTTGACTTAG
20313024 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20313050 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20313076 G
1 G
20313077 ATCGGATCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20313960 original size:26 final size:26
Alignment explanation
Indices: 20313930--20313982 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20313920 GTTGACTTAG
*
20313930 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
20313956 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20313982 G
1 G
20313983 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.