Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 117 of 195
Found at i:20314848 original size:26 final size:26
Alignment explanation
Indices: 20314818--20314870 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20314808 GTTGACTTGG
*
20314818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20314844 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20314870 G
1 G
20314871 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20315744 original size:26 final size:26
Alignment explanation
Indices: 20315710--20315762 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20315700 GTTGACTTAG
*
20315710 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
20315736 GCATGCGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
20315762 G
1 G
20315763 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:20316069 original size:905 final size:901
Alignment explanation
Indices: 20312334--20316171 Score: 5158
Period size: 906 Copynumber: 4.3 Consensus size: 901
20312324 GTGTGCGTAT
* **
20312334 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTTA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
20312399 GAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * **** * *
20312463 TCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTTTGGTTTGACTTTTTAGCTGAA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
20312528 TGTTTTTCTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
196 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTT
* * * * ** *
20312593 CCGAAGAAATTTTAAAAAATCCTGAACCGCAAAAGGTTTTGAAAATTATGAAAAATAGGAAACGA
261 CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGA
* * *
20312658 GTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAA
326 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAA
*
20312723 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCAC
391 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
20312788 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCAT-CCGCCTGCCCGCTCGTTTCG
456 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-TGCCGCCCGCCCGCTCGTTTCG
** *
20312852 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACTGAGGGTTGTGG
520 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGG
** * * * * *
20312916 CAGCAGGATCGGTAGCACATAGAGTGGGACCC-AGTCGATCCCCGGCTTCCACATCCTGCCCCTC
584 CAGCAGGATCGACAGCACACAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * *
20312980 TGGCCGACAGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
648 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAG
* * * *
20313045 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCCGACC-AAGGGTTGCGGCAGCACAA
713 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAA-GGTTGCGACAGCACAT
* * * * * *
20313109 GCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCGTCGTCGGAGCTTC-G
777 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCAC
* * * * * * *
20313173 CTGGAGAACCAGACCGGCGGCATTTGGGTTCCGACGATTTGGGGGGGCCGGGGGGGATGTACGCA
842 CT-GA-AAACAGACCAGCGGCATTGGGGTTCCGACGA-TCGGGGGGG-CTGGGGGGCTG--CACA
20313238 C
901 C
20313239 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * * *
20313304 GAACTAACACTCCTTTAAAGGGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
20313369 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
20313434 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCAT
196 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTT
** * * * *
20313499 CTGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGG
261 CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGA
* * * * *
20313564 GTCGTCTTGCCGTGAAACTTCACATGAAGGCTTAGGGGACCATTGTACGAATTTGCAAGCCACAA
326 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAA
20313629 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
391 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
20313694 GGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCC-GCCCGCCTGCCTGCTTGTTTCG
456 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTG-CCGCCCGCCCGCTCGTTTCG
* * * * *
20313758 TCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAATATCATACCAGACTGAGGGTTACGGT
520 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGC
* * * * * * * *
20313823 AGCAAGATTGACAGCGCACAGAGGGGGACCCGGTTGATCCTCGGCTTGCGTATCCCGCCCTTCTG
585 AGCAGGATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
20313888 GGCGGCGGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGT
650 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGT
* * * * * * * * * *
20313952 GTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAACACATAC
714 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGCGACAGCACATGC
*
20314017 TGCGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACC-
779 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCT
* * * * * *
20314081 GAAGAACCTGACC-GACGGCATTGAGGTTTCGACG-GCCGGGGGG-T---GTGC-GCA-A-
844 GAA-AA-CAGACCAG-CGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGCTGCACAC
* * * * * *
20314133 ATTATGTGCGATGGGTGCTGATACTTCGCCCTTATATTGGCCCCTTATCCCTCATCGAACCTTGA
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
20314198 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
20314263 TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * *
20314328 TTTTTTTGTGCATGCCAACAAAAATACAAGGCTCACGTCTACCATGTTTGGGGCCAAAAATGCTT
196 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTT
**
20314393 CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-TGAAATTATGAAAAATAGAAAACGA
261 CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGA
*
20314457 GTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAA
326 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAA
20314522 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
391 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
20314587 GGCTTGCGCATCTCGTCTCTCTGGCC-AGCGTGGTGCCCG--CT--TGCCCGTCCGCTCGTTTTG
456 GGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCTGCCGCCCGCCCGCTCGTTTCG
** * * *
20314647 TCGGTTGGCTTAGGCATACGGAGTTCATTCATAGTCTAAGATCAAACCAGACTGAGGGTTGCAGT
520 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGC
* * ** *
20314712 AGAAGGATCGACAACACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT-CCGCCTCTCTG
585 AGCAGGATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * *
20314776 GCCGGTTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTC
650 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
* *
20314841 TAAGCATA-TAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCG-AGGTTTCGACAGCACATGC
715 TAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGCGACAGCACATGC
* **
20314904 TAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTTGGAG-A--ACCT
779 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCT
* * *
20314966 G--AAC-GA-CA---ACATTGGGGTTCCGGCGATCGGGGGGGCTGAGGGGG-TGCGCAC
844 GAAAACAGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCTG-GGGGGCTGCACAC
* ** *
20315017 ATGATGTGCAATGGGTGCTGGTACTTGGCAATTATATTGGCCACCTATCCCTCATCAAACCTCG-
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
20315081 GAAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
66 G-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
20315146 GTC-GAAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCCG
130 GTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
20315210 ATTTTTTTTGTGCATGCCAGCAAAAATACAAGGATCACATCTACAAATTTTGGGGCCAAAACTCC
194 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCC
*
20315275 TTCCAAAAAAATTTTAAAAAATCCTGAACC-CAAAAAGTTTCAAAAATTATG-AAAATAGAAAAC
259 TTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAAC
* * * *
20315338 GAGTCGCCTTGCCATGACACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAT
324 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAC
20315403 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
389 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
20315468 ACGGCTTGCACATCCCGTCTTTCAGGCCGACGTAGTGCCCGTTCGCCTGCCCACCCGCCCGCTCA
454 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CCTG-CCGCCCGCCCGCTCG
* * ** * * * *
20315533 TTTCGTCTGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCTAAGATTGGATCTGACCGATGGTT
515 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* * * * *
20315598 GCGGCAGCAGGATC-AGCAGCACACAGAGGTGGACCCGACCGATCCCCAGCTTGTGCATCCCACC
580 GCGGCAGCAGGATCGA-CAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
* *
20315662 CCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTC
644 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTC
* * *
20315727 CCAGTCTAAGCATGCGAAGTTCATTCCCAATCTAAGATCGGA-CTGGACCGAAGGTTACGACAGC
709 CCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAAGGTTGCGACAGC
* * ** *
20315791 ACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTACCAGAGCA
773 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA
* *
20315856 TCGCCTGAAAACATGACCAGCGGCATTGGGGTTCCGACGATCGAGGGGGCTGGGGGGTCTGCACA
838 TCACCTGAAAACA-GACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGG-CTGCACA
20315921 C
901 C
* * *
20315922 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGT
1 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
20315987 GAACTCACACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
66 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
20316052 TCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTTAGCTGAA
131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
20316117 TCTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAA-TTTGGGGCC
196 T-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAAGTTTGGGGCC
20316172 GACGTATTGC
Statistics
Matches: 2575, Mismatches: 298, Indels: 120
0.86 0.10 0.04
Matches are distributed among these distances:
876 13 0.01
877 7 0.00
878 1 0.00
879 1 0.00
880 2 0.00
881 1 0.00
882 6 0.00
883 184 0.07
884 270 0.10
885 1 0.00
886 1 0.00
887 68 0.03
888 104 0.04
889 113 0.04
890 1 0.00
891 111 0.04
892 107 0.04
893 247 0.10
894 278 0.11
895 1 0.00
896 5 0.00
898 4 0.00
899 2 0.00
900 2 0.00
901 2 0.00
903 5 0.00
904 34 0.01
905 299 0.12
906 703 0.27
907 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTT
CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAA
AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTGCCGCCCGCCCGCTCGTTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
GCAGGATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCT
AAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGCGACAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCTGA
AAACAGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGCTGCACAC
Found at i:20316790 original size:657 final size:662
Alignment explanation
Indices: 20315516--20316817 Score: 1816
Period size: 668 Copynumber: 2.0 Consensus size: 662
20315506 CCGTTCGCCT
* * *
20315516 GCCCACCCGCCCGCTCATTTCGTCTGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCTAAGATT
1 GCCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCACACGAAGTTCATTCCAAGTCTAAGATT
* * * * * *
20315581 GGATCTGACCGATGGTTGCGGCAGCAGGATCAGCAGCACACAGAGGTGGACCCGACCGATCCCCA
66 GGACCGGACCAAGGGTTGCGGCAGCAGGATCAGCAGCACACAGAGGGGGACCCGACCAATCCCCA
* ** *
20315646 GCTTGTGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGG
131 GCTTGCGCATCCCACCCCTCTGGCCGGCGGAGCGCCCGCACACTCGTTTCATGGGTCGACTTAGG
* ** **
20315711 CATACGAAGTTCATTCCCAGTCTAAGCATGCGAAGTTCATTCCCAATCTAAGATCGGACTGGACC
196 CATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAGACC
* ** ** *
20315776 GAAGGTTACGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGC
261 GAAGGTTACGACAGCACATGCTGGGCTCGGGCATGCACTGGTGCCACATTTTTCTTCCTCGGGGC
20315841 ACCATTACCAGAGCATCGCCTGAAAACATGACCAGCGGCATTGGGGTTCCGACGATCGAGGGGGC
326 ACCATTA-C--AG-ATCG-C-GAAAACATGACCAGCGGCATTGGGGTTCCGACGATCGAGGGGGC
*
20315906 TGGGGGGTCTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATC
385 CGGGGGGTCTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATC
* *
20315971 CCTCATCAAACCTCGTGAACTCACACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCC
450 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
20316036 AGTAGCCATTAAAGTGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTT
515 AGTAGCCATTAAAGTGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
20316101 TGAGTTTTTAGCTGAATCTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTT
580 CGAGTTTTTAGCTGAATCTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTT
20316166 GGGGCCGACGTATTGCCC
645 GGGGCCGACGTATTGCCC
* * * *
20316184 GCCCGCCCGCCCGCTTC-TTTTGTCGGTTGGCTTAGGGATACGAAGTTCATTCCAAGTCTAAGAT
1 GCCCACCCGCCCGC-TCATTTCGTCGGTTGGCTTAGGCACACGAAGTTCATTCCAAGTCTAAGAT
** * * *** *
20316248 TGGACCGGATTAAGGGTTGTGGCAGCAGGATCGGCAGCACGGGGAGGGGGACCCGGCCAATCCCC
65 TGGACCGGACCAAGGGTTGCGGCAGCAGGATCAGCAGCACACAGAGGGGGACCCGACCAATCCCC
* * * * *
20316313 GGCTTGCGCATCCTACCCCTCTGGTCGGCGGAGCGCCCGCACGCTCGTTTCGTGGGTCGACTTAG
130 AGCTTGCGCATCCCACCCCTCTGGCCGGCGGAGCGCCCGCACACTCGTTTCATGGGTCGACTTAG
* * * *
20316378 GCATACGAAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
195 GCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAGAC
* * *
20316443 C-AAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGCACTGGTGCCACATTTTTCTTCCTCGGG
260 CGAA-GGTTACGACAGCACATGCTGGGCTCGGGCATGCACTGGTGCCACATTTTTCTTCCTCGGG
* * * *
20316507 GCACCA-T-C-G-TCG-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
324 GCACCATTACAGATCGCGAAAACATGACCAGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGG
* ** * *
20316567 GGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GTCCCCTTATCCCT
389 GGGTCTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTCG-CCCCCTATCCCT
*
20316631 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
453 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
20316696 AGCCATTAAAGTGTCTGGAATGAG-GACACTTTGTTT-AAATGGTCACAAAATCTTGTACACTTC
518 AGCCATTAAAGTGTCTGAAATG-GCGACACTTT-TTTCAAATGGTCACAAAATCTTGTACACTTC
* *
20316759 GAGTTTTTAGCTGAAT-TTTTTTGTTCATGCCAAAAAAAATGCAAGGATCACGTCTACCA
581 GAGTTTTTAGCTGAATCTTTTTT-TGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
20316818 TGTTTAGGGC
Statistics
Matches: 561, Mismatches: 67, Indels: 23
0.86 0.10 0.04
Matches are distributed among these distances:
656 7 0.01
657 265 0.47
658 4 0.01
660 3 0.01
662 1 0.00
665 1 0.00
667 3 0.01
668 275 0.49
669 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (662 bp):
GCCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCACACGAAGTTCATTCCAAGTCTAAGATT
GGACCGGACCAAGGGTTGCGGCAGCAGGATCAGCAGCACACAGAGGGGGACCCGACCAATCCCCA
GCTTGCGCATCCCACCCCTCTGGCCGGCGGAGCGCCCGCACACTCGTTTCATGGGTCGACTTAGG
CATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAGACC
GAAGGTTACGACAGCACATGCTGGGCTCGGGCATGCACTGGTGCCACATTTTTCTTCCTCGGGGC
ACCATTACAGATCGCGAAAACATGACCAGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGG
GTCTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATCTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCC
GACGTATTGCCC
Found at i:20317300 original size:26 final size:26
Alignment explanation
Indices: 20317270--20317322 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20317260 GTTAACTTAG
20317270 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
*
20317296 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
20317322 G
1 G
20317323 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:20317904 original size:892 final size:889
Alignment explanation
Indices: 20316181--20323603 Score: 9372
Period size: 892 Copynumber: 8.2 Consensus size: 889
20316171 CGACGTATTG
* * * *
20316181 CCCGCCCGCCCGCCCGCTTC-TTTTGTCGGTTGGCTTAGGGATACGAAGTTCATTCCAAGTCTAA
1 CCCGCCCG-CCGCCCGC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * ** * *
20316245 GATTGGACCGGATTAAGGGTTGTGGCAGCAGGATCGGCAGCACGGGGAGGGGGACCCGGCCAATC
64 GATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* ** * * *
20316310 CCCGGCTTGCGCATCCTACCCCTCTGGTCGGCGGAGCGCCCGCACGCTCGTTTCGTGGGTCGACT
129 CCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * *
20316375 TAGGCATACGAAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-AAACC
194 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACC
* * * ** * *
20316439 AGACCAAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGCACTGGTGCCACATTTTTCTTCCTC
259 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* *
20316504 GGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
324 GGGGCACCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG
* * *
20316569 GTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCTTATCCCTCAT
389 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
20316634 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
454 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGC
* *
20316699 CATTAAAGTGTCTGGAATGAGGACACTTTGTTT-AAATGGTCACAAAATCTTGTACACTTCGAGT
518 CATTAAAGTGTCTGAAATGGGGACACTTT-TTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
20316763 TTTTAGCTGAATTTTTTTGTTCATGCCAAAAAAAATGCAAGGATCACGTCTACCATGTTTAGGGC
582 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
20316828 CAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATAAAAA
647 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * *
20316893 ATTGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTT
712 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*** * *
20316958 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTATCACTC
777 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
20317023 TATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGGGTAGTGCTC
842 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-C
* ** *
20317072 ACCCGCCCAGCCGCCCCCTCGTTTCGTTAGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAA
1 -CCCGCCC-GCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * *
20317137 GATATGACTGGATCAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACTGATC
64 GATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * * ** * * *
20317202 CACGGCTCGCGCATCCCACCCCTCTGGCCTACTGAGCACCCGCACGCTCGTTTCATGGGTTAACT
129 CCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
20317267 TAGGCATACGCAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACC
194 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACC
* * **
20317331 GGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCCC
259 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * *
20317396 GGGGTACCATCATCGAAGAACCTGACCGGCGGCATTGGGATTCCGGCGATCGGGGGGGCTCGGGA
324 GGGGCACCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGC-CGGGG
20317461 GGTGTGCGCACATGATGTGC-ATTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
388 GGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
20317525 ATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCAGTA
452 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTA
* * * *
20317589 GCCGTTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAT
516 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
20317654 TTTTTAGCTGAATTTTTTTATGCATGCCCACAAAAATACAAGGACCACGTCTACCAAGTTTGGGG
581 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** *
20317719 CAAAAAGC-CCTTCCAAAAAAATTTTAAAAAATCTTGAACGGCAAAAAGTTTCAAAAATCATGAA
646 CCAAAA-CTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
*
20317783 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
710 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
20317848 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTCCCTAAACCCACCTACCAC
775 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
20317913 TCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--
840 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * *
20317961 CTCGCCCGCCCGCCCGCTCGTTTCGTCCGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
1 CCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * *
20318026 ATATGACTGGATCAAGGGTTGTGGCAGCAGGATCAGCAGCACGTAGAGGGGGACCCGACCGATCC
65 ATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-C
* *
20318091 ACGGCTTACGCATCTCGCCCCTCTGGCCTGCTGATCCCGCCCCTCTGGCCTGCTGAGCACCCGCA
129 -C--C---CG------G---CT-T-G--TGC--ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
20318156 CGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCATTCTAAGCATACGGAGTTCAT
173 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
20318221 TCCCAGTCTAAGATC-AGATCGGACTGATGGTTACGGCAGCACCTGCTGGGCTCGGGCATGTGCT
238 TCCCAGTCTAAGATCGAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
20318285 GGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACGGGCGGCATTGGGGTTCC
303 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * * ** * **
20318350 GGCGATCGGGGGGCCCAGGGGATGTGCAAACATGATGTGCGTTGGGCACTGGTACTTGGCCCTTA
368 GGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
20318415 TATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTT
433 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
20318480 TACAGGTTTGTTGCTAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACA
498 TACAGGTTTGCTGC-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
20318545 AAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAGGGATC
562 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * *
20318610 ACATCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCGAAA
627 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* * * * * *
20318675 AGTTTCAATAGTCATGAAAAATAGAAAATGAGTCGTCTTACCATGAAACTTCAAGTGAAAGCTTA
692 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * * ** * *
20318740 AGGGACCATTGTATGAATTTAAAAACCATAAAAAAGGCATTGGCGGGTAGAAATATGAAGATTTG
757 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* *
20318805 CCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT
822 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
20318870 G--
887 GCC
* *
20318871 CCCG-TCGCC-CGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CCCGCCCGCCGC-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
20318934 ATCGGACCGGATCGAGGGTTGCGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCC
65 ATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * * * *
20318999 CCGGCTTGTGCATCCCACCCCGCTGGCCTGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTT
130 CCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * *
20319064 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATC-AGGCCA
195 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCG
* **
20319128 GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTTGTGCTGGTGCCGTGTTTTTCT
260 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA------TGTGCTGGTGCCGCATTTTTCT
* ** * * *
20319193 TCGTC--GG-AGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATC------G--
319 TCGTCGGGGCACCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC
20319247 GGGGGGTGTGCGCACATGATG-GACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
384 GGGGGGTGTGCGCACATGATGTG-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
20319311 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACC
448 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GC
* *
20319376 AGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTTTAAATGGTCACAAAATCTTGTACACT
512 AGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * *
20319441 TCGAATTTTTAGTTGAA-TTTTTTGCGCAAGCCAACAAAAATACAAGGATCACATCTACGAAGTT
576 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * *
20319505 TGGGCCCAAAACTCATTCCGAAAAAATTTTAAAAAATCTCAAACCGC-AATAGTTTCAAAAATCA
641 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * *
20319569 TGAAAAATAAAAAACGAGTCGTCTTGCCATTAAGCTTCACGTGAAGGCTTAAGGGACCATTGTAT
706 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
20319634 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
771 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
20319699 CCACCCTATCGATCCACGGCTTGCGCATCGCGTCTCCCTGGCCGGCGTAGTGCC
836 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * *
20319753 CGCC-CCC-CCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAG
1 C-CCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * ** *
20319816 ATCGGACCAGACCGAGGGTTGCGACAGCAAGATCAACAGCACGCAGAGGGGGACCC-AGCAGATC
65 ATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATC
* * * * * *
20319880 CCTGGCTTGTGCATCCTGTCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTAACT
129 CCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
20319945 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
194 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GAG
*
20320010 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGG--GCAGCAGCACATGCTGGGCTCGGGCATGT
256 ---------A--C------CGGACC-GA--G-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * *
20320073 GCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCAGAGCATCGCCGGAGAACTTGACCGGC
300 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--------CAT---CGGAGAACCTGACCGGC
** *
20320138 GGCATTGGGGTTCCGGCGATCGGGGGGGTGGGGGGGTGTGGGCACATGATGTGCGATGGGTGCTG
354 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
20320203 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
419 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
20320268 AGAATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
484 AGCATTTGAGATTTTACAGGTTTGCTGC-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
20320333 TTCAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTAGCTGAATTTTTGTT-TGCATGCCAAC
548 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TTGTGCATGCCAAC
* *
20320397 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAGCTCCTTCCAAAAAAATTTTAAAAAA
612 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * *
20320462 TCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACT
677 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
20320527 TCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
742 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* ** *
20320592 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATATCATCTC
807 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
20320657 TCTGGCCGACGTAGTGCCC
872 TCTGGCCGGCGTAGTG-CC
* *
20320676 GCCCGCTCACCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
1 -CCCG----CCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * * * **
20320741 TTATGATCGGACCAGA-CTGAGGGTTACGGCAGCAAGATTGGCAGTATGCAGAGAGGGACCCGGT
60 CTAAGATCGGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC
* * *
20320805 CGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAACGCCCGCACACTCGTTTCGTGGGT
124 CGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
20320870 TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTTCCCAGTCTAAGATC
189 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCCAGTCTAAGATC
* * * *
20320935 -AGATCGGACCGAGGGTCGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTC
253 GAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * *
20320999 TTCATCGGGGCACCATCGTCGGACCATCGCCGGAGAACCTGACCGACGGCAATGGGGTTTCGGTG
318 TTCGTCGGGGCACCA---T-----CAT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCG
* ** * *
20321064 ATCGGAGGGGCCGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTATTGATACTTGGCCTTTA
372 ATCGGGGGGGCC----GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
20321129 TATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCACCTTAAAGAGAATTTGAGATTT
433 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
20321194 TACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
498 TACAGGTTTGCTGC-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
20321259 AAATCTTGTACAATTCAAGTTCTTAGCTGAATTATTTTTTTGCATGCCAACAAAAATACAAGGAT
562 AAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * *
20321324 CACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAATATTTTAAAAAATCCCGAACCTCAAA
626 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAA
*
20321389 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
691 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
20321454 AACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGT
756 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * *
20321519 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCAGCCATAG
821 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
20321584 TG--
886 TGCC
* * * * * * *
20321586 CCCG--C-CCGTCCGCTCGTTTCATCGGTTGGTTTAGGCATACGAAGCTCATTCCCAATCGAAGA
1 CCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * *
20321648 TCAGACCGGA-CAAAGGGTTACGACAACAGGATCGGTAGCACACAGAGGGGGACCC-AGTCGATC
66 TCGGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATC
* * * * *
20321711 CTCGGCTTGTGCGTCCCGCCCCTCTGGTCGGCTAAACGCCCGCACGCTCGTTTCGTGGGTTGACT
129 CCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * ** *
20321776 TAGGCATACGAAGTTCATTCCCAGTCTAAGTACACGGAGTTCATTCGAAGTCTAAGATCG-GACA
194 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACC
* * ** *
20321840 GGACCAAGGGTTGCGGTAGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTATCTTCGTC
259 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * *
20321905 AGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGG
324 GGGGCACCA---T-----CAT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG
* *
20321970 GGGGCCGGGGGG-GTGCACACATGATGCGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
378 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
20322034 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
443 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *** * *
20322099 CTGCCAGTAGCCATTAATGCACCTGAAATGGGGACACATTTTTAAAATGGTCACAAAATCTTGTA
508 CTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
20322164 CACTTCAAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
572 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * *
20322229 AGTTTGGGGCCAAAACTCCTCCCGAAAAAGTTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAA
637 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* * * * *
20322294 ATCATGAAAAAAAGAAAACGAGTCGGCCTACCATGAAACTTCACGTGAAGGCTTAAGGTACCATT
702 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
20322359 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCGGAAATATGAAGATGTGCCAAAACCCA
767 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
20322424 CCTACCACCCTATTGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAGTGCCC
832 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC
* * * * *
20322483 GCCCACCCGTCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTTATTCCCAGTCTAA
1 -CCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * *
20322548 GATCGGACTAGACCGAGGGTTGTGGTAGCAAGATCGACAGCACGGAGAGGGGGATCCGACCGATC
64 GATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * * * * *
20322613 CCCGGCTTGCGCATCCTGCCCTTCTGGCCGGCTGGGCACCCGCATGCTCGTTTCATGGGTTGACT
129 CCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
20322678 TAGGCATACGGAGTTCATTCCCAG-CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-GACC
194 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACC
* * * *
20322741 GGACCAAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGTC
259 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
20322806 -GGGCACCATCACCGGAGCATCGCCGGAGTACCTGACCAGAGGCATTGGGGTTCCGACGAT-TGG
324 GGGGCACCAT--------CAT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG
*
20322869 GGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
378 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
20322934 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
443 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
20322999 CTGTCAGTAGCAATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCAAAAAATCTTGTA
508 CTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
20323064 CGCTTCGAGTTATTAGCTGAAATATTTTTT-TGCATGCCAACAAAAATACAAGGATCTCGTCTAC
572 CACTTCGAGTTTTTAGCTG-AAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * *
20323128 CAGGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGGTTCAA
635 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
*
20323193 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
700 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
**
20323258 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
765 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
20323323 CACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTGGCGTAGTG--
830 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * * * * *
20323381 CCCGCCCGCCCGCTCGCTCGATTCATCGGTTGGCTTAGGAATACAGAGTTTATTCCCAGTCTATG
1 CCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * * *
20323446 ATCGGACCGAACCGAGCGTCGCGGTAGCAGGATCGACAGCACGTAGAGGGGTACCCGATCGATCC
65 ATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * * * * * *
20323511 CTGACTTATGCATCCCACCCCTCTGGCCAGCTGAGCGTCCGCACGCTCATTTCGTGGGTTGACTT
130 CCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
20323576 AGGCATACGGAGTTCATTCTCAGTCTAA
195 AGGCATACGGAGTTCATTCCCAGTCTAA
20323604 AATTGGCCCG
Statistics
Matches: 5752, Mismatches: 633, Indels: 286
0.86 0.09 0.04
Matches are distributed among these distances:
880 180 0.03
881 229 0.04
882 262 0.05
883 6 0.00
884 1 0.00
886 142 0.02
887 1 0.00
888 118 0.02
889 41 0.01
890 4 0.00
891 6 0.00
892 732 0.13
893 86 0.01
894 270 0.05
895 188 0.03
896 7 0.00
897 183 0.03
898 7 0.00
899 38 0.01
900 370 0.06
901 555 0.10
902 177 0.03
903 8 0.00
904 5 0.00
905 24 0.00
906 5 0.00
907 5 0.00
908 210 0.04
909 90 0.02
910 601 0.10
911 1 0.00
912 206 0.04
913 306 0.05
918 1 0.00
919 1 0.00
920 45 0.01
921 230 0.04
922 187 0.03
923 4 0.00
924 1 0.00
927 2 0.00
928 3 0.00
929 2 0.00
930 199 0.03
931 13 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
CCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
CGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGG
ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
GGCACCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
Found at i:20318210 original size:26 final size:26
Alignment explanation
Indices: 20318180--20318232 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20318170 GTTGACTTAG
* *
20318180 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20318206 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20318232 G
1 G
20318233 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20319096 original size:26 final size:26
Alignment explanation
Indices: 20319066--20319118 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20319056 GTTGACTTAG
*
20319066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
20319092 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
20319118 G
1 G
20319119 ATCAGGCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:20319984 original size:26 final size:26
Alignment explanation
Indices: 20319948--20320026 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
20319938 GTTAACTTAG
20319948 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20319974 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20320000 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20320026 G
1 G
20320027 ATCGGACCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20320914 original size:26 final size:27
Alignment explanation
Indices: 20320878--20320931 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
20320868 GTTGACTTAG
20320878 GCATACGGAGTTCA-TTCCCAATCTAA
1 GCATACGGAGTTCATTTCCCAATCTAA
*
20320904 GCATACGGAGTTCATTTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAATCTAA
20320931 G
1 G
20320932 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTTCCCAATCTAA
Found at i:20322711 original size:25 final size:26
Alignment explanation
Indices: 20322681--20322732 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
20322671 GTTGACTTAG
20322681 GCATACGGAGTTCATTCCCAG-CTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20322706 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20322732 G
1 G
20322733 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20325643 original size:25 final size:26
Alignment explanation
Indices: 20325594--20325658 Score: 123
Period size: 25 Copynumber: 2.5 Consensus size: 26
20325584 TAGGCATATA
20325594 GAGTTCATTCCCAGTTTAAGCATACG
1 GAGTTCATTCCCAGTTTAAGCATACG
20325620 GAGTTCATTCCCAG-TTAAGCATACG
1 GAGTTCATTCCCAGTTTAAGCATACG
20325645 GAGTTCATTCCCAG
1 GAGTTCATTCCCAG
20325659 CCAAAATTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
25 25 0.64
26 14 0.36
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GAGTTCATTCCCAGTTTAAGCATACG
Found at i:20326145 original size:27 final size:26
Alignment explanation
Indices: 20326089--20326146 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
20326079 GTCCTTCCGA
* ***
20326089 AAAAATTTTTAAAAATCCTGAACCGC
1 AAAAATTTTTAAAAATCATGAAAAAC
*
20326115 AAAAATTTTTCAAAAATCATGAAAAAT
1 AAAAATTTTT-AAAAATCATGAAAAAC
20326142 AAAAA
1 AAAAA
20326147 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.57, C:0.12, G:0.05, T:0.26
Consensus pattern (26 bp):
AAAAATTTTTAAAAATCATGAAAAAC
Found at i:20326544 original size:26 final size:26
Alignment explanation
Indices: 20326508--20326560 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20326498 GTTGACTTAG
*
20326508 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
20326534 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
20326560 G
1 G
20326561 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:20329254 original size:26 final size:26
Alignment explanation
Indices: 20329217--20329269 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20329207 GTTGACTTAG
*
20329217 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20329243 GCATAC-AGAGTTTATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
20329269 G
1 G
20329270 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20329735 original size:903 final size:899
Alignment explanation
Indices: 20325613--20333578 Score: 10561
Period size: 903 Copynumber: 8.9 Consensus size: 899
20325603 CCCAGTTTAA
* * * * *
20325613 GCATACGGAGTTCATTCCCAGT-TAAGCATACGGAGTTCATTCCCAG-CCAAAATTGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * * * *
20325676 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGACATTTTTCTTCATCGGG
66 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCG-TATTTTTCTTCGTCGGG
** * * * *
20325741 GCACCATCGTCGGAGCATCGTCGGAGAGCCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGG
130 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
*
20325806 TCGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
195 GC-TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* ** * * *
20325871 GTCCCTCATCAAACCTCAAGAACTCACACCCTCATAAAGAGCATTTGATATTTTACAGGTTTGTT
259 ATCCCTCATCAAACCTTGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
20325936 GCCAGTAGCCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
20326001 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAG
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
20326066 ATTGGGGCCAAAAGTCCTTCCGAAAAAATTTTTAAAAATCCTGAACCGCAAAAATTTTTCAAAAA
453 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAA-GTTTCAAAAA
* * * *
20326131 TCATGAAAAATAAAAAACGAGTCGTCTTGCCGTGAAACTTTACGTGAAGGCTTAAGGGACCATTG
517 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
**
20326196 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT-CCGTAAACCCA
582 TATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCC-TAAACCCA
**
20326260 CCTACCACCCTATCGATCCACGGCTTGCGCATATCGTCTCTCTGGCCGACGTAGTG-C-CCG--C
646 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCGCCC
* *
20326321 --CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCA-TCCCAGTCTAAGATTGGA-
711 GTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
20326382 CAAGACCGAGGGTTACGACAGC-TGCATC-AGCAGCACGCAGAGGGGGACCCGACCGATCCCCGA
776 CGA-ACCGAGGGTTGCG-CAGCAAG-ATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGA
*
20326445 CTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
837 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
20326508 GCATATGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * *
20326573 TGAGGGTTGTGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCG-CTGGG
66 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGG
** * * * * * *
20326637 GCACCATCGTCGGAGCATCGTCAGAGAACTTGACCGGTGGCATTGGGGTTTCGGCAATCGGGGGG
130 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* * * *
20326702 GCCGGGGGGGTGTGCGCACATGATTTGTGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCT
195 G-CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
20326767 ATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAGACCATTTGAGATTTTATAGGTTTGCT
259 ATCCCTCATCAAACCTTGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
20326832 GCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAA
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * *
20326897 CTTCGAGTTTTTAGCTGACTTATTTTATGCATACCAAAAAAAAAAAATACAAGGATCATGTCTAC
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC----AACAAAAATACAAGGATCACGTCTAC
* * *
20326962 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCT-AACGGTAAAAAGTTTCG
449 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCTGAACCGCAAAAAGTTTCA
* * *
20327026 AAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAATA-TTCATGTGAACGCTTAAGGGAC
513 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGAC
* * *
20327090 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGGCTAAA
577 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAA
* * *
20327155 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTATCTAGCCGATGTAGTGCCAGC
642 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-G-
* * * *
20327220 CCGTCCGCCTGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
705 CCG--C-CC-GTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * * * *
20327285 AAGATCAGATCAAACTAAAGGTTGCAGCAGCAGGATCGACAGCACGCAGACGGGGACCCGACCGA
766 AAGATCGGACCGAACCGAGGGTTGC-GCAGCAAGATCGACAGCACGCAGAGGGGGACCCGGCCGA
* * * **
20327350 TCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTTATGGGTTGA
830 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
20327415 CTTAG
895 CTTAG
* * ** * *
20327420 GCATACGGAGTTCATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCAAACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
** * * * *
20327485 CGAGGGTTGCAACAGTACATGCTGGGCTCGAGCATGTTCTGGTGCCCGTATTTTTCTTCGTCGGG
66 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTG-CCGTATTTTTCTTCGTCGGG
* ** * *
20327550 GCACCAT--------CA-C--CGGAGAACCTGACCGGCGGCATTAGTATTCCGACGATCAGGGGG
130 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* * *
20327604 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTTGCCCTTATATTGGCCCCCTA
195 GCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* ** *
20327669 TCCCACATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
260 TCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
20327734 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCGAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
20327799 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
20327864 TTTGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATC
454 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
* * *
20327929 ATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTA
519 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
20327994 TGAATTTACAAGACATAAAAAATGGCAGTGGCATGTAGAAATATGAAGATGTACCTAAACCCACC
584 TGAATTTACAAGCCAT-AAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACC
* * *
20328059 TACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCC
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCC-GCCC
* * * * * * *
20328124 GCCCCCCCCCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTATAAGATTGGAC
711 GTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * ** * *
20328189 TGGACCGAGGGTT-CTG-AAAATAGGATCGACAGCACGTAGAGGGGGACCCGGCCGAT-CCCTAT
776 CGAACCGAGGGTTGC-GCAGCA-A-GATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGA-
* *** * * * *
20328251 CTTGCGCGT-CCTTTCCTCTGGCCGGTTGGGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
837 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
20328313 GCATATGGAATTCATTCCCAGTCTTAGCATACGAAGTTCATTCCCAGTCTAAGAGCGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * *
20328378 CGAGGGTTACAGCAGCACATGCTAGGTTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* *
20328443 CACCATCACCAGAGCATCATCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
131 CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
** **
20328508 CCAAGGCAGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
196 -CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
20328573 TCCGTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
260 TCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
20328638 CCAGTAGCCAGTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
20328703 TTCGAGTTTTTAGCTCAATTATTTTGTGCACGCCAACAAAAATACAAGGAGCATGTCTACCAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
20328768 TTCGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATG
454 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
* * *
20328833 GTGAAATATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
519 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
20328898 TGAATGTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-GT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
20328962 GACCACCCTATCGATCCACGGCTTCCGCATCCCATCCCTCTGGCCGACGTAGTGCCTGCTCGCCC
649 -ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-GC-CGCCC
*
20329027 GTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGAC
711 GTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * *
20329092 CGAACTGAGGGTTGCAGCAGCAAGATCGGCAGCATGGAGAGGGGGACCCGGTCGATCCTCGACTT
776 CGAACCGAGGGTTGC-GCAGCAAGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTT
* * *
20329157 GCGCATCCCGTCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
840 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
20329217 GCATACGAAGTTCATTCCCATTCTAAGCATACAGAGTTTATTCCCAGTCTAAGATCAGATCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * *
20329282 CGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * *
20329347 CACCATCACCGGAGCATCACCGGAGAACCTAACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGG
131 CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
*
20329412 CGTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
196 C-TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
20329477 TCCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
260 TCCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
20329542 CAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
20329607 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
390 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * ** *
20329672 TGGGGTCAAAACTCCTACCGAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATGG
455 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCG
*
20329737 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTAT
520 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
20329802 GAATGTACAAGCCATAAAAATGGCATTGCCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
585 GAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTA
* * ** * *
20329867 CCACCCTATCGATCCATGGCTTACGCATCCTATCCCTCTGGCAGACGTAGTGCCTGTCCGCCCGT
650 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-G-CCGCCCGT
* * *
20329932 CCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTCACAGTCTAAGATCGGACCG
713 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * * *** * *
20329997 GACCGAGGGTTGTGGCAGCAAGATTGGCAGCATGCAGAGGGGAACTTAGCCGATCCCCGGCTGGC
778 AACCGAGGGTTG-CGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGC
* * * * *
20330062 GCATCCCGCCCCTCTGGCCGACTGAGAGCTCGCACGCTTGTTTCGTGGGTTGATTTAG
842 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
20330120 GCATACGAAGTTCATTCCCTGTCTAAGCATACAGAGTTGATTCCCAGTCTAAGATTGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * * * * * *
20330185 CGAGGGTTGCAGCAGCACATGCTAGGCTTGAGCATGTGCTGGTGCTGCAATTTTCTTCGTCAGGG
66 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * * * * *
20330250 CACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCGTTGGGGTTCCGGTGATCGAGGGCG
131 CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
*
20330315 CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAAATGG-CCCCTA
196 CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT-ATTGGCCCCCTA
* * *
20330379 TCCCTCATCAAA-CTTGGAAAACTCATAACGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
260 TCCCTCATCAAACCTT-GAGAACTCA-CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
20330443 GCCAGTAACCATTAAAGTGTCT-AGAATAGGGACACTTTATTCAAATGGTCACAAAATCTTGTAC
323 GCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
20330507 ACTTGGACTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAG
387 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * **
20330572 GTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAA
452 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAA
* * * *
20330637 TCATGAAAAATA-AAAACGAGTCGTCCTGTCATGAAACTTCACGTGAAGGCTTAGGGGACCATTG
517 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* ** ** * *
20330701 TATGAATTTAGAAGCCATAAAAATGGCATTTTCATGGATAAATATGAAGATGTGCCAAAACCCAC
582 TATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCAC
* *
20330766 CTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCC-CAC
647 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-GCCGC-C
* *
20330830 C-T--GCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
710 CGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * **
20330892 CC-AGACTGACGGTTGCGATAGCAGGATCGACAGCATGCAGAGGGGGACTCGATCGATCCCCGAC
775 CCGA-ACCGAGGGTTGCG-CAGCAAGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGAC
* * *
20330956 TTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAA
838 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
20331018 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
** * * * *
20331083 CGAGGGTTGCGATAGCATATGCTGGGCTGGGGCATGT-CTGGTGTCGTATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * * * * *
20331147 CACCATCACCGGAGCATCTTCGGAGAGCCTGACCGTCGGCATTGGGGTTCCAGTGAT--AGGGGG
131 CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* * *
20331210 CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTAT
196 CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
20331275 CCCTCATCAGACCTTGAGAACTCACACCCCCTTCAAGAGCATTTGAGAATTTT-CAGGTTTGCTG
261 CCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAG-ATTTTACAGGTTTGCTG
* * *
20331339 CCAGTAGCCATTTAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
20331404 TTCGAGCTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * * * *
20331469 TTGGGAACTAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATT
454 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
*
20331534 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTA
519 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
** *
20331599 TGAATTTACAAGCCATAAAAATCTCATTGGCATATAGAAATATGAAGACGTGCCTAAACCCACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACCT
20331664 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-AGCGTAGTG-C-CCG--C-T
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCGCCGCCCGT
* * * *
20331723 -----CGCTCGTTTCGTCGCTTGGCTGAGGCATACGGAGTTCATTCCTAGTCTAAGATCTGACC-
713 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * *
20331782 AGACCGAGGGTTGTGGTAGCAAGATCGACAGCACGGAGAGGGGGACCCGGTCGATCCTCGACTTG
778 A-ACCGAGGGTTG-CGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTG
* * *
20331847 CGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAG
841 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* **
20331906 GCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * *
20331971 CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGG
66 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
** * * * * *
20332036 CACCATCGTCGAAGCATCACCGGAGAACCTGACCGGCGACGTTGGGGTTCCGACGATCGGGGGGG
131 CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
20332101 TCGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
196 -C-TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * *
20332166 ATCCCTCGTCAAACCTCGAGAACTCACACCTCTAAAAGAGAATTTGAGATTTTACAGGTTTGCTG
259 ATCCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
20332231 CCAGTAGCCAATAAAGTGTCTGAAATGGGGATAC-TTTTTCAAATGGTCACAAAGTCTTGTACAT
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * * *
20332295 TTCAAGTTTGTAGCTGAATTTTCTTGTGCATTCCAACAAAAATAAAAGGATCACTTTTACCAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
20332360 TTAGGGCCAAAACTCCTTCC--AAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATC
454 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
* *
20332423 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
519 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
20332488 TGAATTTACAAGACATAAAAAATGGCAGTGGCA-AGTAGAAATATGAAGATGTACCTAAACCCAC
584 TGAATTTACAAGCCAT-AAAAATGGCATTGGCATA-TAGAAATATGAAGATGTGCCTAAACCCAC
* * *
20332552 CTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCC
647 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCC-GCC
* * * * *
20332617 CGCCCGCCCCCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
710 CGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * * * *
20332682 CTGGACTGAGGGTTGCGATAGTAGGATCGGCAGCACACAGAGGGGGACTCGGCCGATCCCCGTCT
775 CCGAACCGAGGGTTGCG-CAGCAAGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACT
* * * * * * * * *
20332747 TACGCGTCCCGTCCCTCTGGCAGGCTGGGTGCCCGCACGCTCATTTTGTGCGTTGACTTAG
839 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * *
20332808 GCATATAGAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * * *
20332873 CGAGGGTTGTGGCAGCACATGCTAGGTTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGG
66 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
** * * *
20332938 CACCATCACCGGAGCATTGTCGAAGAACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGG
131 CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
*
20333003 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
196 CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
20333068 CCCTCATCAAACCTTGATAACTCACACCCGTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
261 CCCTCATCAAACCTTGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
20333133 CAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
20333198 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAGGGATCACGTCTACCAAGTT
390 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * ** *
20333263 TGGGGCAAAAAAC-CCTTCCAAAAAAATTTAAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATG
455 TGGGGC-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
20333327 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
519 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
** *
20333392 TGAATTTACAAGCCA-ATAAAATGGCATTGGCATGCAGAAATATGAATATGTGCCTAAACCCACC
584 TGAATTTACAAGCCATA-AAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACC
* * *
20333456 TACCACCCTATCAATCCGCGGCTTGCGCATCCCATCTCTCTGGCCGACGT-GCTGTCCGCCCGCC
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG-TG-CCG-CCGCC
* * *
20333520 CGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAG
710 CGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20333579 CATACGGAGT
Statistics
Matches: 6221, Mismatches: 739, Indels: 214
0.87 0.10 0.03
Matches are distributed among these distances:
888 253 0.04
889 189 0.03
890 91 0.01
891 110 0.02
892 88 0.01
893 228 0.04
894 105 0.02
895 316 0.05
896 467 0.08
897 287 0.05
898 333 0.05
899 178 0.03
900 168 0.03
901 278 0.04
902 689 0.11
903 1352 0.22
904 798 0.13
905 4 0.00
908 1 0.00
911 40 0.01
912 214 0.03
913 31 0.00
914 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCGCCCGTCCG
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
CGAGGGTTGCGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCAT
CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:20330157 original size:26 final size:26
Alignment explanation
Indices: 20330120--20330172 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20330110 GTTGATTTAG
*
20330120 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20330146 GCATAC-AGAGTTGATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
20330172 G
1 G
20330173 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20331045 original size:26 final size:26
Alignment explanation
Indices: 20331015--20331070 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20331005 TGGGTTGACT
*
20331015 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
20331041 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
20331067 TAAG
1 TAAG
20331071 ATCGAACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:20331936 original size:26 final size:26
Alignment explanation
Indices: 20331906--20331958 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20331896 GTTGACTTAG
*
20331906 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20331932 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20331958 G
1 G
20331959 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20332847 original size:26 final size:26
Alignment explanation
Indices: 20332808--20332860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20332798 GTTGACTTAG
*
20332808 GCATATAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
*
20332834 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
20332860 G
1 G
20332861 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:20333588 original size:26 final size:26
Alignment explanation
Indices: 20333552--20333604 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20333542 GTTGGCTTAG
20333552 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
* *
20333578 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
20333604 G
1 G
20333605 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:20334175 original size:730 final size:730
Alignment explanation
Indices: 20332777--20334304 Score: 2146
Period size: 730 Copynumber: 2.1 Consensus size: 730
20332767 CAGGCTGGGT
* * * * *
20332777 GCCCGCACGCTCATTTTGTGCGTTGACTTAGGCATATAGAATTCATTCCCAGTCTAAGCATACAG
1 GCCCGCCCGCTCATTTCGTG-GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAG
* * * * *
20332842 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTAGGTTCGGGCA
65 AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCA
*** * *
20332907 TGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACCGGAGCATTGTCGAAGAACCTGACT
130 TCCACTGGTGCCGCATTTTTCTTCGCTGGGGCACCAT--CC-G-GC----TCGAAGAACCTGACC
* *
20332972 GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
187 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCCGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
20333037 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGATAACTCACACCCGTTTA
252 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCGTTTA
* * *
20333102 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
317 AAGAGCATTTGAGATTTTACAAGGTTGCTACCAGTAGCAATTAAAGTGTCTAAAATGGGGACACT
** *
20333167 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGACA
382 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGACA
* * *
20333232 ACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCAAAAAACCCTTCCAAAAAAATTTAAAAA
447 AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAAACCCTTCCAAAAAAATTTAAAAA
* * * *
20333297 AATCCAGAACCGCAAAAAGTTTTGAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
512 AATCCAGAACCGCAAAAAGTTTCGAAAATCGTAAAAAATAGAAAACGAGTAGTCTTGCCATGAAA
*
20333362 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAATAAAATGGCATTGGCATGC
577 CATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAATAAAATGGCATTGGCAT-C
* *
20333427 AGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCAATCCGCGGCTTGCGCATCCCATC
641 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATC
* ** *
20333492 TCTCTGGCCGACGTGCTGTCCGCCCGCCC
706 TCTCAGGCC-A-GCACAGT--GCCCGCCC
* * *
20333521 GTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAGCATACGG
1 GCCCGCCCGCTCATTTCGT-GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAG
* *
20333586 AGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
65 AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCA
* * *
20333651 TCCACTGGTGCCGTATTTTTCTTTGCTGGGGCACCAT-C-GC-CGGAGAACCTGACCGACGGCAT
130 TCCACTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCCGGCTCGAAGAACCTGACCGACGGCAT
20333713 TGGGGTTCCGACGATC-GGGGGGCCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
195 TGGGGTTCCGACGATCGGGGGGGCCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
20333777 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-TCTTAAAGAGCA
260 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCGT-TTAAAGAGCA
*
20333841 -TTGA-ATTTTAC-AGGTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
324 TTTGAGATTTTACAAGGTTGCTACCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
*
20333903 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAA
389 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGAC-AAAAAAA
* *
20333968 ATACAAGGATCACATCTACCAAGTTTGGGGC-CAAAACTCTTTCCGAAAAAAATTT-AAAAAAT-
453 ATACAAGGATCACATCTACCAAGTTTGGGGCAAAAAAC-CCTTCC-AAAAAAATTTAAAAAAATC
* * *
20334030 CATGAACCGTAAAAAGTTTCGACAATCGTAAAAAATAGAAAACGAGTATTCTTGCCATGAAACAT
516 CA-GAACCGCAAAAAGTTTCGAAAATCGTAAAAAATAGAAAACGAGTAGTCTTGCCATGAAACAT
* *
20334095 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-GTAAAAATGGCATTGGGACAT-A
580 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAT-AAAATGGCATT-GG-CATCA
* * * * *
20334158 GAAATCTGAAGATGTGCCTAAACCCACCTACCTCCCTATCGATCCACGGCTTGTGCATCCCGTCT
642 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCT
20334223 CTCAGGCCAGCACAGTGCCCGCCC
707 CTCAGGCCAGCACAGTGCCCGCCC
* * * * * *
20334247 GCCCGCCCGTTCGTTTGGTTGGTTGGCTTAGGTATACGGAGTTCATTCCTAGTCTAAG
1 GCCCGCCCGCTCATTTCG-TGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
20334305 ATCAGACCGG
Statistics
Matches: 705, Mismatches: 69, Indels: 38
0.87 0.08 0.05
Matches are distributed among these distances:
726 56 0.08
727 1 0.00
728 4 0.01
729 109 0.15
730 225 0.32
731 17 0.02
732 110 0.16
733 35 0.05
738 2 0.00
741 1 0.00
744 144 0.20
745 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (730 bp):
GCCCGCCCGCTCATTTCGTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCAT
CCACTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCCGGCTCGAAGAACCTGACCGACGGCATT
GGGGTTCCGACGATCGGGGGGGCCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCGTTTAAAGAGCATT
TGAGATTTTACAAGGTTGCTACCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGACAAAAAAAATA
CAAGGATCACATCTACCAAGTTTGGGGCAAAAAACCCTTCCAAAAAAATTTAAAAAAATCCAGAA
CCGCAAAAAGTTTCGAAAATCGTAAAAAATAGAAAACGAGTAGTCTTGCCATGAAACATCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAATAAAATGGCATTGGCATCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCAGGCCA
GCACAGTGCCCGCCC
Found at i:20334471 original size:26 final size:26
Alignment explanation
Indices: 20334437--20334487 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20334427 GTTGACTTAG
20334437 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20334463 GCATGCAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
20334488 GGATTGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20335378 original size:26 final size:26
Alignment explanation
Indices: 20335340--20335392 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20335330 GTTGACTCAG
20335340 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20335366 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20335392 G
1 G
20335393 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20338462 original size:26 final size:26
Alignment explanation
Indices: 20338424--20338476 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20338414 TCGATCTGAT
20338424 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
20338450 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
20338476 C
1 C
20338477 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:20339638 original size:186 final size:185
Alignment explanation
Indices: 20339323--20339687 Score: 513
Period size: 186 Copynumber: 2.0 Consensus size: 185
20339313 CAGTCTGATT
20339323 TTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACC
1 TTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACC
* * *
20339388 GGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGCTGGGTCCCCCTCTACGTGCTATCGATCCT
66 GGCCAGAGAGGCGGGATGTCCAAGCCGAGGATCGGCTGGGTCCCCCTCTACGTGCTACCGATCCT
*
20339453 GCATGCCGTAAACC-TCGAT-TCGATCTGATCTTAGACTGGGAAAGAACTCCATATGC
131 GC-TGCCG-AAACCTTCAATGT-GATCTGATCTTAGACTGGGAAAGAACTCCATATGC
* * *
20339509 TTAGACTTGG-AATGAACTTCGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 TTAGAC-TGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * * * * *
20339573 CGGCCAGAGAGGCGGGATG-CCTAAGCCGGGGATCTGCTGTGTCCCTCTCTGCGTGCTGCCGATC
65 CGGCCAGAGAGGCGGGATGTCC-AAGCCGAGGATCGGCTGGGTCCCCCTCTACGTGCTACCGATC
* * *
20339637 CTGCTGCCGCAACCTTCAATGTGGTCTGATCTTAGACTGGGAATGAACTCC
129 CTGCTGCCGAAACCTTCAATGTGATCTGATCTTAGACTGGGAAAGAACTCC
20339688 GCATGCCTAA
Statistics
Matches: 159, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
184 4 0.03
185 37 0.23
186 115 0.72
187 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (185 bp):
TTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACC
GGCCAGAGAGGCGGGATGTCCAAGCCGAGGATCGGCTGGGTCCCCCTCTACGTGCTACCGATCCT
GCTGCCGAAACCTTCAATGTGATCTGATCTTAGACTGGGAAAGAACTCCATATGC
Found at i:20340406 original size:26 final size:26
Alignment explanation
Indices: 20340370--20340422 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20340360 CTGGTCCAAT
* *
20340370 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGAATGGGAATGAACTCCATATG
20340396 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
20340422 C
1 C
20340423 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:20341312 original size:26 final size:26
Alignment explanation
Indices: 20341275--20341327 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20341265 CCAGTCCAAT
20341275 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
20341301 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
20341327 C
1 C
20341328 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:20341568 original size:905 final size:902
Alignment explanation
Indices: 20339480--20343951 Score: 5921
Period size: 901 Copynumber: 5.0 Consensus size: 902
20339470 ATTCGATCTG
* * * * *
20339480 ATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTTGGAATGAACTTCGTATGCCTAAGTGAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
20339545 CCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGAGGCGGGATGC-CTAAGCCGGGGATCTG
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGC-AAGCCGGGGATC-G
* ** * * * *
20339609 -CTGTGTC-CCTCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCTTCAATGTGGTCTGATCTTAG
129 ACTGGGTCGCC-CTCTATGTGCTGCCGATCCTGCTGCCGCAACCTTCAGTCTGGTTTAATCTTAG
* *
20339672 ACTGGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCA----GGCGGGC
193 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGC
* * * *
20339733 ACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAAG
258 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* ** *
20339798 CACATCTTCATATTTCTGCAAGCCAATGCCATTTTTATCTCTTGTAAATTCATACAATGCTCCCT
323 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * * * **
20339863 TAAGCCTTCATGTGAAGTTTAATGGTAAAATGACTCATTTTCTATTTTTCATAATTTTTGAAACT
388 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* *
20339928 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGT
453 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * **
20339993 CATCCTTGTATATTTTTTTGGCGGGCACAAAAAAATTCAGCTAAAAACT-GAAAGTGTACAAGAT
518 GATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGAT
* *
20340057 TTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTA
581 TTTGTGACCATTTGAAA-AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
20340122 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAA
645 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* *
20340187 TATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATC
710 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
* * * * * * *
20340251 ACCAAAACCCGAATGTCACC-GTCAGGTTCTCT---A-------GCGATGGTGCCCCGACGAATA
775 GCCGAAACCCCAATGCCGCCGGTCAGGTTCTCTGCGATGCTCCGGCGATGGTGCCCCGATGAAGA
* * * *
20340305 GAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCA
840 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCA
* ** * * *
20340368 ATCTTAGATTGGGAATGAACTCTATATGCTTAGAATGGGAATGAACTCCATATGCCGAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** * *
20340433 CCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGGTGGGATGCATAAGCCGGAGATC-AG
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGAC
* *** * * ** * *
20340497 TCGGGTCCCCCTCTGCATGCTGTCGATCTTGCTGCCATAACCCTCAGTCTGGTCTAATCTTAGAC
131 T-GGGTCGCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCTTCAGTCTGGTTTAATCTTAGAC
** ** *
20340562 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGACCAAGCGGGCGGGCGGGCAC
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCAC
* *
20340627 TACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCA
260 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
20340692 CATCTTCATATTTCTGCATGCCAATTCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
325 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* **
20340757 AGCCTTCACGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
390 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
** * * ** *
20340822 TTGTGGTTCGGGATTTTTTTAAATTTTTTCGGAATGAGTTTTCACCCCAAACATGGTAGACGTGA
455 TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
20340887 TCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTG
520 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
** * * * *
20340952 TGACCATTTGACAAAAGTGTTGCCATTTTAGACACATTAATGGCTACTGGCAGCAAACCTATAGA
585 TGACCATTTGA-AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
20341017 ATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
649 ATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
20341082 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGACCGGC
713 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCC
* * * * *
20341147 GGAACCCCAATGCCGTCGGTCAGGTTCTCATACGATGCTCCGGTGATGGCGCCCCGATGAAGAAA
778 GAAACCCCAATGCCGCCGGTCAGGTTCTC-TGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAA
* * ** *
20341212 AATGCGGCACCAGCACATGCCCTAGCCCAGTATGTGCTGTGGCAACCCTCGGTCCAGTCCA
842 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCA
*
20341273 ATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
20341338 CCACGAAACGAGCATGCGAGTGCTCAGCCGACCAGAGGGGTGGGCTGCGCAAGCCGGCGATCGAC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGAC
** * * * * *
20341403 TGAATCTGCCC-CTGTGTGCTACCGATCCTGCTGCCACAACCTTCGGTCTGGTTTGATCTTAGAC
131 TGGGTC-GCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCTTCAGTCTGGTTTAATCTTAGAC
* *
20341467 TGGGAATGAACTCCGTATGCCTAAGCCAACCGGCGAAATGAGCGGGCGGGCAGGCGGGCGGGCAC
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCAC
* ** *
20341532 TACGTCGGCCAGAGAGACGGGATGCACGCGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGA
260 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
20341597 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTA
325 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
20341662 AGCC-TCACGTTAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC-TT
390 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * *
20341725 TTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGACCCAAACTTGGTAAACAG-G
455 TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC-GTG
* *
20341789 CTCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTT
519 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
20341853 GTGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
584 GTGACCATTTGAAA-AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
20341918 AATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
648 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
20341983 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCTCACCCCCCCGGCCCCCCCGATCGTC
713 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCC
* * * * * *
20342048 GAAACCCCAAAGCCGCCGGTCAGGGTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAGA
778 GAAACCCCAATGCCGCCGGTCAGGTTCT-CTGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAA
* * * *
20342113 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAATCCTTGGTCTGGTCCT
842 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCA
* * *
20342174 ATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
20342239 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAACGAGTGGGATGCGCAAGCCGGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGAC
* * * * ** * *
20342304 TGGGTCGCCCTCTATGTGCTGCCAATCCTGCTACCGTAACCCTT-TGTCCAGTTCAATCTTAGAG
131 TGGGTCGCCCTCTATGTGCTGCCGATCCTGCTGCCGCAA-CCTTCAGTCTGGTTTAATCTTAGAC
* * * * * *
20342368 TTGGAATGAACTGCGTATGCCTAAGCCAACCAACGAAACGAGTGGGCGGGCGGGCAGGCGGGCAC
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCAC
** * * *
20342433 TATATCGGCCAGAGAGACTGGATGGGCAAGCCGTGGATCTATAGGGTGGTAGGTGGGTTTAGGCA
260 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
20342498 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTA
325 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
** *
20342563 AGCCTTCACGCAAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
390 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
** * * *
20342628 TTACGGTTCAAGATTTTTTAAAAATTTTTTC-AAAGGAGTTTTGGCCGCAAAATTGGTAGACGTG
455 TTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
20342692 ATCCTTGTATTTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
519 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
20342757 -TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
584 GTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
20342821 AATCTCAAATGCCCTTTAAGAGGGTGTGAGTTCTCATGGTTTGATGAGGGATAGGGGGCCAATAT
648 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
*
20342886 AAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCGG-CCCCCCGATCG
713 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CCGGCCCCCCCGATCG
* * * *
20342950 CCGAAACCCCAATGCTGCCGATCAGGTTTTCTGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGA
776 CCGAAACCCCAATGCCGCCGGTCAGGTTCTCT-GCGATGCTCCGGCGATGGTGCCCCGATGAAGA
* * *
20343015 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA-TC-CGATCT-G----
840 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCA
* * *
20343071 ATCTTAGACT-GGAATGAACTCCGTACGCTTAGACTGGAAATGAACTCCTTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * ** * *
20343135 CCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAAACGGACGGGATGCGCAAGCTGGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGAC
* * * * ** * *
20343200 TGGGTCACCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCTGTCCAGTTCAATCTTAGAGT
131 TGGGTCGCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCTTCAGTCTGGTTTAATCTTAGACT
* * * * * *
20343265 TGAAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTGAGCGGGCAGGCGGACGGGCACT
196 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACT
* * *
20343330 ACGTCAGCCAAAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
261 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
20343395 ATCTTCATATTTCTACGTTCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
326 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
20343460 GCCTTTACGTGAAGTTTAATGGCAAGACGACTCGTTTTTTATTTTTTCTCGATTTTTGAAACTTT
391 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCACGATTTTTGAAACTTT
** * * * * *
20343525 TTGTGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCTCCAAACTTGGTAGATGTGA
455 TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
20343590 TCCTT-TCATTTTTCTTGGCACGCATAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTT
520 TCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
20343654 GTAACCATTTCAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTAATGGCAGCAAACCTGTAA
584 GTGACCATTT-GAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
20343719 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATAT
648 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * **
20343784 AAGGGCCAAGTACCAGCACCCATCGCACAT-TTGTGTGCACACCCCCTC-GACCCCCCGATCGTT
713 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCC
* * * * * * * *
20343847 GGAACCTCAATGCCGTCGGTCAGGTTGTCCGGTGATGCTCCAGCGATGGTGCCCCGGTGAAGAAA
778 GAAACCCCAATGCCGCCGGTCAGGTTCT-CTGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAA
* * *
20343912 AATGCGACACCAGCACATGCTCGAGCACAGCATGTGCTGC
842 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
20343952 TCCAACGATG
Statistics
Matches: 3161, Mismatches: 375, Indels: 89
0.87 0.10 0.02
Matches are distributed among these distances:
887 1 0.00
888 206 0.07
889 2 0.00
891 125 0.04
892 332 0.11
893 29 0.01
894 12 0.00
895 107 0.03
896 391 0.12
897 140 0.04
898 150 0.05
900 4 0.00
901 548 0.17
902 172 0.05
903 307 0.10
904 216 0.07
905 414 0.13
906 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGAC
TGGGTCGCCCTCTATGTGCTGCCGATCCTGCTGCCGCAACCTTCAGTCTGGTTTAATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACT
ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGAA
ACCCCAATGCCGCCGGTCAGGTTCTCTGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCA
Found at i:20342216 original size:26 final size:26
Alignment explanation
Indices: 20342176--20342228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20342166 CTGGTCCTAT
*
20342176 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTACGTATG
*
20342202 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGAAATGAACTACGTATG
20342228 C
1 C
20342229 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTACGTATG
Found at i:20343990 original size:67 final size:67
Alignment explanation
Indices: 20343882--20344016 Score: 243
Period size: 67 Copynumber: 2.0 Consensus size: 67
20343872 TGTCCGGTGA
*
20343882 TGCTCCAGCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCTCGAGCACAGCATGT
1 TGCTCCAACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCTCGAGCACAGCATGT
20343947 GC
66 GC
* *
20343949 TGCTCCAACGATGGTGCCCCGGTGAAGAAAAATGTGACACCAGCACATGCTCGAGCACGGCATGT
1 TGCTCCAACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCTCGAGCACAGCATGT
20344014 GC
66 GC
20344016 T
1 T
20344017 ACCGCAACCC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.27, C:0.29, G:0.28, T:0.16
Consensus pattern (67 bp):
TGCTCCAACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCTCGAGCACAGCATGT
GC
Found at i:20344445 original size:26 final size:26
Alignment explanation
Indices: 20344416--20344468 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20344406 CTGATCCGAT
*
20344416 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20344442 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20344468 C
1 C
20344469 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:20345331 original size:26 final size:26
Alignment explanation
Indices: 20345302--20345354 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20345292 CTGGTCCTAT
* *
20345302 CTTAGACT-GAGAATGACCTCTGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
20345328 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20345354 C
1 C
20345355 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20345606 original size:185 final size:184
Alignment explanation
Indices: 20345290--20345697 Score: 518
Period size: 185 Copynumber: 2.2 Consensus size: 184
20345280 GCAACACTTG
* * * *
20345290 GTCTGGTCCT-ATCTTAGACTGAGAATGACCTCTGTATGCTTAGACTAGGAATGAACTCCGTATG
1 GTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGAAATGAACTCCGTATG
* *
20345354 CCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCATAGGGGCAGGATGCGTAAGC
65 CCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * * *
20345419 CGGGGATCGGCCGGGTCCCCCACT-CTGTGTTG-CTGATCCTACTGCCGCAACCCTCA
130 CGGAGATCGACC-GGTCCCCCACTAC-GTGCTGTC-GATCCTACTACCGCAACCCTCA
* *
20345475 GTCTGGTCTGATCTTAGACCGGGAATGAACTCCGTATGCTTATACT-GCAAATGAACTCCGTATG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG-AAATGAACTCCGTATG
* * * * *
20345539 CCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGGCCCGAGGGGCGGGATGCGCAAGC
65 CCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * * * * * *
20345604 CGGAGATTGATCGGTCCTCCTCTACGTGCTGTCGATCTTGCTACTGCAACCCTCA
130 CGGAGATCGACCGGTCCCCCACTACGTGCTGTCGATCCTACTACCGCAACCCTCA
*
20345659 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
20345698 CTAAGCCAAC
Statistics
Matches: 193, Mismatches: 26, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
184 72 0.37
185 121 0.63
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (184 bp):
GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGAAATGAACTCCGTATGC
CTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
GGAGATCGACCGGTCCCCCACTACGTGCTGTCGATCCTACTACCGCAACCCTCA
Found at i:20347241 original size:903 final size:898
Alignment explanation
Indices: 20345460--20349101 Score: 4741
Period size: 903 Copynumber: 4.1 Consensus size: 898
20345450 GCTGATCCTA
* * * **
20345460 CTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACCGGGAATGAACTCCGTATGCTTATACTGCAA
1 CTGCCGCAACCCTCAGTCTGGTATGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
20345525 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGGCCCGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * *
20345590 CGGGATGCGCAAGCCGGAGATTGA-TCGGTCCTCCTCTA-CGTGCTGTCGATCTTGCTACTGCAA
131 CGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTC-AGCGTGCT-ACGATCCTGCTACCGCAA
*
20345653 CCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACG
194 CCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
20345718 AG-TAGGCGGGCCGGCAGGCGGGCACTGCGCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
259 AGCT-GGC-GG-CGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATC
** *
20345782 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGCGCCAATGCCATTTTTATGGC
321 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
* *
20345847 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTTGTTTT
386 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
20345912 CTATTTTTCACAATTTTGGAAACTTTTTGCGGTTTGAGATTTTTTTAAATTTTTTCGAAAGGAGT
451 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGAAAGGAGT
* * * **
20345977 TTTGGCCCCAGACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGTACAAAAAAATTCAGGA
516 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
20346042 AAAAACTTGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
581 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
20346107 ATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGT
646 ATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
20346172 TTGAGGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGTGCA
711 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* *
20346237 CACCCCCCGGCCCCCTCGATCATTGGAACCTCAATGCCA-CTGGTCAGGTTCTCCGGTGATGCTC
776 CACCCCCC-GCCCCC-CGATCATCGGAACCCCAATGCCATC-GGTCAGGTTCTCCGGTGATGCTC
* * * ** *
20346301 CAACGATGGTGCCCCGACGAAGAGAAATATAGCACCAGCACATGCCCGAACCCAGCATGTG
838 CGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
20346362 CTACCGCAACCCTCAATCTGGTATGATCTTAGACTAGGAATGAACTCGGTATGCTTAGACTGGGA
1 CTGCCGCAACCCTCAGTCTGGTATGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
20346427 ATGAACTCCGTACGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAGCTAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* *
20346492 CGGGATGCGCTAGCCGGGGATCGACTGGGTCCCCCTCAGCGTGCTACGGATCTTGCTACCGCAAC
131 CGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCAGCGTGCTAC-GATCCTGCTACCGCAAC
*
20346557 CCTCCA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
195 CCT-CAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
** * *
20346621 AGCTGGCAGGCGGTCGGGCGGGCACTACGTTGACCAGAAAGACGGGATGCGCAAGCTGTGGATCG
259 AGCTGGC-GGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCG
*
20346686 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
322 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
20346751 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
387 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
20346816 TAATTTTCACGATTTTTGAAACTTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTTGGAAGGAGT
452 TATTTTTCACGATTTTTGAAAC-TTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGAAAGGAGT
* * * *
20346881 TTTGGCCCCAAACTTGGTAGATGTGATCCCTGTATTTTTTTTGGCATGGACAAAAAAATTCAGCT
516 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
20346946 AAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTA
581 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
20347011 ATGGGTACTGGTAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGT
646 ATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
** * * *
20347076 GAGATGATGGATAGGGGACCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
711 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * ** *
20347141 CACCCCCCAGCCCCCCAATCATCGGAACCCCAATGCTATCGGTCATGTTCTACGACGACGCTCCG
776 CACCCCCC-GCCCCCCGATCATCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCG
* *
20347206 ACGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
840 ACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * ** ** * *
20347265 CTGCCGTAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGCATGCTTAGACTGGGA
1 CTGCCGCAACCCTCAGTCTGGTATGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
20347330 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGGGCTTAGCCGACCAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * * * *
20347395 CAGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCACTGCATGCTGCCAATCCTGCTGCTGGAAC
131 CGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCAGCGTGCT-ACGATCCTGCTACCGCAAC
** *
20347460 CCTC-GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATTAAACA
195 CCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * *
20347524 AGCGGGC-G-GGCGGGCGGGCACTACGTCGGCCTGAGAGACGGGATGCGCAAGC-GTGGATCGAT
259 AGCTGGCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGAT
* * * * *
20347586 AGGATGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTA
324 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
20347651 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
389 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
20347716 TTTTTCACGATTTTTGAAACTTTTTGCGGTTCTG-GATTTTTTAAAATTTTTTC-AGAAGGATTT
454 TTTTTCACGATTTTTGAAACTTTTTGCGGTT-TGAGATTTTTTAAAATTTTTTCGA-AAGGAGTT
*
20347779 TTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
517 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
20347844 AAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAA
582 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
20347909 TGGCTACTGGTAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTT
647 TGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
20347974 TGATGAGGGATAGGGGGCCAATA-AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
712 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
20348038 ACCCCCCGACCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCACCGA
777 ACCCCCCG-CCCCCCGATCATCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCGA
* * * * * *
20348103 CAATGGTGCCCCAGTGAAGAAAAATACGGAACCAGCACATGCCCGAGCACAGTATGTG
841 CGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
20348161 CTGCTGCAACCCTCAGT-TCGGTCTGATCTTAGA-TTGG---GAA------A--C--A-AC----
1 CTGCCGCAACCCTCAGTCT-GGTATGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
20348206 --T----T-CGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAACCGGCCAAAGGG
65 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * *
20348264 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCACAA
130 GCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCAGCGTGCTA-CGATCCTGCTACCGCAA
* * * *
20348329 CCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAATG
194 CCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
20348394 AGCTGGC-G-GGCGAGCGGGCACTACGCCGGCCAGAGAGACGGTATGCACAAG-TCATGGATCGA
259 AGCTGGCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT-GTGGATCGA
** ** *
20348456 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGTGAATGAAATTTTTATGGCAT
323 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
* * *
20348521 GTAAATTCATACAATGGTCCTTTAAGCCTTCTCGTGAAGTTGCATGGCAAGACGACTCGTTTTCT
388 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * * * ** *
20348586 ATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTCTTCGAAAAAATTTT
453 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGAAAGGAGTTT
* * * *
20348651 TGGTCCCAAACTTGATAGACGTGATCCTTGTATTTTT-ATGTCATGCACCAAAAAAATTTCAGCT
518 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAA-TTCAGCT
*
20348715 AAAAACTCGGAAGTGTACAAGATTTTTGTGACCATTTTGAAAAAAGTGTCCCCATTTCAGACATT
581 AAAAACTC-GAAGTGTACAAGA-TTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
20348780 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGA
643 TTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
20348845 GGTTTGATGA-GGATAGGGGGCCAATATAAGGGCGAAGTCCCAGCACCCATCGCACATCAGGTGC
708 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * ** *
20348909 GCACACCCCCGCCCGGCCCCCTGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTTGA
773 GCACA--CCC-CCC-GCCCCCCGATCATCGGAACCCCAATGCCATCGGTCAGGTTCTCCGG-TGA
* ** ** ** *
20348974 TGCTTCGGTGATCGGTGCCCCGATGAAGACAAAATGTGGCTACCAGGCACAATCGCTCGAGCCCA
833 TGCTCCGACGAT-GGTGCCCCGGCGAAGA-AAAATACGGC-ACCA-GCAC-AT-GCCCGAGCCCA
*
20349039 ACATGTG
892 GCATGTG
* * * *
20349046 CTGTCGCAACCCTCAGTCT-GTCCA-GATCTTAGA-TTGGAATGAACTCTGTAAGCTTA
1 CTGCCGCAACCCTCAGTCTGGT--ATGATCTTAGACTGGGAATGAACTCCGTATGCTTA
20349102 AGATTCGGAA
Statistics
Matches: 2413, Mismatches: 273, Indels: 112
0.86 0.10 0.04
Matches are distributed among these distances:
870 214 0.09
871 222 0.09
872 15 0.01
873 13 0.01
874 27 0.01
875 137 0.06
877 3 0.00
878 43 0.02
879 11 0.00
880 14 0.01
881 9 0.00
882 5 0.00
883 4 0.00
884 5 0.00
885 42 0.02
886 2 0.00
888 3 0.00
892 3 0.00
894 1 0.00
895 4 0.00
896 171 0.07
897 234 0.10
898 156 0.06
899 38 0.02
900 2 0.00
901 1 0.00
902 140 0.06
903 601 0.25
904 293 0.12
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTGCCGCAACCCTCAGTCTGGTATGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCAGCGTGCTACGATCCTGCTACCGCAACC
CTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
CTGGCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCGCCCCCCGATCATCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCGACGATG
GTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
Found at i:20347321 original size:26 final size:26
Alignment explanation
Indices: 20347292--20347344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20347282 CCAGTCCGAT
*
20347292 CTTAGATTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
20347318 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
20347344 C
1 C
20347345 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20349327 original size:26 final size:26
Alignment explanation
Indices: 20349291--20349343 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20349281 CTGGTCTGAT
20349291 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20349317 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20349343 C
1 C
20349344 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20351459 original size:26 final size:26
Alignment explanation
Indices: 20351423--20351475 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20351413 GTTGACTTAT
* *
20351423 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20351449 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20351475 G
1 G
20351476 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20352133 original size:26 final size:26
Alignment explanation
Indices: 20352104--20352156 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20352094 GTTGACTTAG
*
20352104 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
*
20352130 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
20352156 G
1 G
20352157 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:20352435 original size:697 final size:677
Alignment explanation
Indices: 20351109--20352489 Score: 1837
Period size: 697 Copynumber: 2.0 Consensus size: 677
20351099 GAGACAATTT
*
20351109 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCAC
1 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
20351174 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCACC
66 CTACCACCCTATCGATCCACGGATTACGCATCCCGTCTCTCTGGCCGACATAGTG-----CCACC
* * *
20351239 TGCCCGCCCGCTCGTTTCGTCGGTTGGATTGGGGATACGGAGTTCATTCCCAGTCTAAGATCAGA
126 TGCCCGCCCGATCGTTTCGTCGGTTGGATTAGGGATACGGAGTTCATTCACAGTCTAAGATCAGA
* * * * * * * *
20351304 TCGAATCGAGGGATGCGATAGCTGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCTCGGCT
191 TCGAACCAAAGGATGCGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGACCCTCGACT
* * * * *
20351369 TGCGCATCCCGTCCCTCCGGTCGGTTGAGCGCCTGTATGCATGGGTTGACTTATGCATATGGAGT
256 TGCCCATCCCGTCCCTCCGGTCGGCTGAGCGCCTGTATGCATGGGTTGACTTAGGCATACGAAGT
* **
20351434 TCATTTCCAGTCTAAGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
321 TCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
* *
20351499 GCAGCACATGCTGGTGCCGCATTTTTATTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
386 GCAGCACATGCTGGTGCCGCATTTTTATTCGTCGGGGCACCATCGCCGGAACATCACCGGAGAAC
* * * * ***
20351564 CTAACTGACGGTATTGGGGTTCCGGTGATTGAGGGGGCCGGGGGGGTGTGCGTGCATGATGCGCG
451 CTAACCGACGGCATTGGGGTTCCGATGATCGAGGGGGCCGGGGGGGTGTGCACACATGATGCGCG
*
20351629 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
516 ATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
20351694 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAA-AGTGTTTGAAATG
581 CCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACA-TGTCTGAAATG
*
20351758 GGGACACTTTTTTCAAATGGTCACAAAATCTTG
645 GGGACACTCTTTTCAAATGGTCACAAAATCTTG
*
20351791 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGTCTAAACCCAC
1 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
20351856 CTACCACCCTATCGATCCACGGATTACGTATCCTGTCTCTCTGGCCGACGTTGTG-C-CC-GCCC
66 CTACCACCCTATCGATCCACGGATTACGCATCCCGTCTCTCTGGCCGACATAGTGCCACCTGCCC
* * *
20351918 GCCCGATCGTTTCGTCGGTTGGCTTAGGGATATGGAGTTCATTCACAGTCTAAGATCAGA-CTGG
131 GCCCGATCGTTTCGTCGGTTGGATTAGGGATACGGAGTTCATTCACAGTCTAAGATCAGATC-GA
* *
20351982 ACCAAAGGTTGCGGCAGCAGGATCGAG-AGCACGCAGAGGGGGACCCGACCGACCCTCGACTTGC
195 ACCAAAGGATGCGACAGCAGGATCG-GTAGCACGCAGAGGGGGACCCGACCGACCCTCGACTTGC
* * * *
20352046 CCATCCTG-CCCTTCTGG-CTGGCTGACTGCCCGTACGCTCGT-TTCGTGGGTTGACTTAGGCAT
259 CCATCCCGTCCC-TCCGGTC-GGCTGA--G--CG--C-CT-GTATGCATGGGTTGACTTAGGCAT
*
20352108 ACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCGGACCGGACCGAG
314 ACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCGGACCGAG
* *
20352173 GGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACC
379 GGTTGCGGCAGCACATGCT-GG-T---GC-----C----G---CATTTTTATTCGTCGGGGCACC
* *
20352238 ATCGCCGGAACATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCC-G
427 ATCGCCGGAACATCACCGGAGAACCTAACCGACGGCATTGGGGTTCCGATGATCGAGGGGGCCGG
*
20352302 GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCC
492 GGGGGTGTGCACACATGATGCGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCC
* *
20352367 TCATCAAACCTTGAGAACTCACATCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAG
557 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAG
20352432 TAGCCATTAACATGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTG
622 TAGCCATTAACATGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTG
20352488 TA
1 TA
20352490 CACTTTGAGT
Statistics
Matches: 609, Mismatches: 60, Indels: 45
0.85 0.08 0.06
Matches are distributed among these distances:
673 5 0.01
674 127 0.21
675 3 0.00
676 2 0.00
678 2 0.00
680 1 0.00
681 97 0.16
682 115 0.19
683 1 0.00
686 2 0.00
691 1 0.00
695 1 0.00
697 175 0.29
698 77 0.13
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (677 bp):
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGATTACGCATCCCGTCTCTCTGGCCGACATAGTGCCACCTGCCC
GCCCGATCGTTTCGTCGGTTGGATTAGGGATACGGAGTTCATTCACAGTCTAAGATCAGATCGAA
CCAAAGGATGCGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGACCCTCGACTTGCCC
ATCCCGTCCCTCCGGTCGGCTGAGCGCCTGTATGCATGGGTTGACTTAGGCATACGAAGTTCATT
CCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
ACATGCTGGTGCCGCATTTTTATTCGTCGGGGCACCATCGCCGGAACATCACCGGAGAACCTAAC
CGACGGCATTGGGGTTCCGATGATCGAGGGGGCCGGGGGGGTGTGCACACATGATGCGCGATGGG
TGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACATGTCTGAAATGGGGACA
CTCTTTTCAAATGGTCACAAAATCTTG
Found at i:20354582 original size:26 final size:26
Alignment explanation
Indices: 20354553--20354605 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20354543 GTTGACTTAG
20354553 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20354579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20354605 G
1 G
20354606 ATTGGACCGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20355605 original size:26 final size:26
Alignment explanation
Indices: 20355569--20355621 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20355559 GTTGACTTAG
20355569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20355595 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20355621 G
1 G
20355622 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20357675 original size:26 final size:26
Alignment explanation
Indices: 20357645--20357697 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20357635 GTTGACTTAG
20357645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20357671 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20357697 G
1 G
20357698 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20358133 original size:904 final size:900
Alignment explanation
Indices: 20355886--20360843 Score: 6469
Period size: 885 Copynumber: 5.5 Consensus size: 900
20355876 TTAGGCATCT
* *
20355886 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
** * * *
20355951 CATGTGCTGGTGCCGTATTTTTCTTCGTTGGGG---CA----C--A--ATCGTCGGAGAA-CTAA
66 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * *
20356004 CCGGCGGCATTGGGGTT-AAGGCGATCGGGGGGGCC--GGGGGCGTGCGCACATGATGTGCGATG
131 CCGACGGCATTGGGGTTCCA-GCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
20356066 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
20356131 CTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
20356196 AACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTGAATTCTTTTGTGCA
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
20356260 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCAT--AAAAAAATTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
20356323 AAAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
454 -TAAAAAATCCCGAACC-CAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
20356388 ATGAAACTTCACATGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** **
20356453 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTAATCCACGGCTTGCGCAT
582 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ** * * *
20356518 CCCATCTCTCTGGGTGACGTAGCGCCCGCCCGCCCGCCT-GCTCGTTTCATCAGTTGGCTTAGGC
647 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCTCGCTCGTTTCATCGGTTGGCTTAGGC
** * * *
20356582 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGA-TCGAAGGTTGTGCCAGCAGGATTGGCAG
712 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGCAGCAGGATCGGCAG
* * * * * *
20356646 CACGCAAAGGGTGACCCGACCGATCCCCAGCTTGCGCATCTTGCCCCTCTGGTCGGCTGAGCGCC
776 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTTGCCGGCTGAGCGCC
* *
20356711 CGCACGCTCGTTTCGTGGGTTGACTTTGGTATACGGAGTTCATTCCCAGTCTAAGCATAC
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
20356771 GGAGTTCATTCCCAGTCAAAGATC-GAACCAGATCGAGGGTTACAGCAGCACATGCTAGGCTCGG
1 GGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGG
* * * * *
20356835 GCACGTGCTAGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTG
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * * * *
20356900 ATCGACGGCATTAGGGTTTC-GACGATCGGGGGGGCCGAAGGGGGTTGTGCGCACATGATGTGTG
130 ACCGACGGCATTGGGGTTCCAG-CGATCGGGGGGGCCG--GGGGGGTGTGCGCACATGATGTGCG
20356964 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
20357029 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATGTCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
20357094 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTAAATTTTTTTGT
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTGT
* *
20357158 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGT-TTTCCGAAAAG
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAAAAA
* * ** *
20357222 ATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTC
450 ATTTTAAAAAATCCCGAACCC-AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
20357287 ACTATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
20357352 TTGGCACATAGAAATATGAAGACGTGCCTAAAGCAACCTACCACCCTATCGATCCACGGCTTGCG
579 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
20357417 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCACCCGCTCGCTCGTTTCATCGGTTGGC
644 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-CCC-CTCGCTCGTTTCATCGGTTGGC
* * * * * *
20357482 TTTGGCATACGGAGTCCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGTGGCAGTAGGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATC
* * *
20357547 GGCAGCACGCAAAGGGGGACCCGACCAATCCCTGGCTTGCGCATCCTGCCCCTCTTGCCGGCTGA
771 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTTGCCGGCTGA
* *
20357612 GCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
836 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
20357677 GGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGCGTTGCGGCCA-CACATGCTGGGCTCGA
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGG-CAGCACATGCTGGGCTCGG
* *
20357741 GCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCCCCGGAGAACCTG
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * * *
20357806 ACCGGCGACATTGAGGTTCCAGCGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATG
130 ACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
20357871 GCTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAAAACTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
20357936 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* **
20358001 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTAGCTGAATTTTTTTGTGCGC
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * *
20358066 ACCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGTCTAGAACTCCTTCCGAAAAAATTTT
390 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
20358131 AAAAAATCCCGAACAGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
455 AAAAAATCCCGAAC-CCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
20358196 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
20358261 AC-TAAAAAATATGAACATGCGCTTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCTTC
584 ACAT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
20358325 CCGTCTCTCTGGCCGGCGTAGT----GCCCG----CC-CGCTCATTTCATCGGTTGGCTTAGGCA
648 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCTCGCTCGTTTCATCGGTTGGCTTAGGCA
* *** * **
20358381 TATGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACTGAGGGTTACAGCAGCAGGATTGATAGC
713 TACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGC
* * ** * * *
20358445 ACGTAGAGGCGGACCCGGTCGATCCCCGGCTTGCGCATTCC-GCCCTTCTGGCCGGTTGAGCGCC
777 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA-TCCTGCCCCTCTTGCCGGCTGAGCGCC
* * * *
20358509 CGTACGGTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
20358569 GGAGTTCACTCCCAGTCCAAGATCAGACTGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
* ** * * *
20358634 CTTGCACTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTC-GAGGCATCACTGGAGAACCTG
66 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGA-GCATCGCCGGAGAACCTG
* *
20358698 ACCGACGGCATTGGGGTTCCAGCGATCGAGGGGGCCGGGCGGGGTGTGTGCACATGATGTGCGAT
130 ACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGAT
* **
20358763 GGGTGCTGGTACTTGACCCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
20358828 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * ** *
20358893 ACACTTTTTTCAAAAGGTTACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** *
20358958 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGACCCAAAACTCCATCCGAAAAAATTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * *
20359023 TAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
454 TAAAAAATCCCGAACC-CAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
20359088 TGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTTG
518 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * *
20359153 CATGTAGAAATAAGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGCATC
583 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
20359218 CCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCACTTGCTCGTTTCATCGGTTGGCTTAG
648 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-CCC-CTCGCTCGTTTCATCGGTTGGCTTAG
* ** * * * *
20359283 GCATACGGAGTTCATTCCCAATCTAACCTCAGACCGGACTGAGGGTTGCGGCAGTAGAATCGGTA
710 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGGCA
*
20359348 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA---T----C-C-TGCC--C--A----
775 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTTGCCGGCTGAGCGC
*
20359396 ---CACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAC
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
20359454 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
* ** *
20359519 CATGTGCTGGTGCCGCATTTTTCTTCGTTAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
66 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * *
20359584 CCGATGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATG
131 CCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATG
* * *
20359649 GGTGCTGGTTCTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAAAACTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
20359714 CCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * **
20359779 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTAGCTGAATTTTTTTATGCGC
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * *
20359844 ACCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGTCTAGAACTCCTTCCGAAAAAATTTT
390 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
20359909 AAAAAATCCCGAACAGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
455 AAAAAATCCCGAAC-CCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
20359974 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
20360039 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCGCATCC
584 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * * * ** * *
20360104 CGTCTCTCTGGCCGGTGTAGTGCCCGCTCGACCGCC-CGCTCGTTTCGTCTATCGACTTAGGCAT
649 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCTCGCTCGTTTCATCGGTTGGCTTAGGCAT
* ** * * * *
20360168 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCATGGTAGCAGGATCGACAACAT
714 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* * * ** * *** * * ****
20360233 GCAGAGGGGGACCTGGCCGATCCTCGGGAT--GCATGCT-CGTTTCGTG--GGTTGA-CTTAGGC
779 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTTGCCGGCTGAGCGCCCGC
*** * **** * * * *
20360292 ATACGGGAG-TTCATTCCCTGTC-TAAGCATATGGAGTTCATTCCTAGTCTAAG-ATGGGACC
844 --ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT---A-C
* * *** ** * *
20360352 GGACCGAGGGTTGCGA-TCGGACCGGAC-ACCCTTGGTCC-GAGCCGAGGGTTACGGCAGCACAT
1 -G---GA--GTT-C-ATTC---CCAGTCTAAGATCAGACCGGA-TCGAGGGTTACGGCAGCACAT
20360414 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC
54 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC
* * * * * ** * *
20360479 CAGAGAACCTGACAGGCGACATTGGTGTTCTGGCGATCGGGGGGGTC-GGGGGCTGTGCGCACAT
119 CGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
20360543 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
184 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
20360608 ACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
249 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
20360673 TGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
314 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
*
20360738 TTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
379 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
** *
20360803 GAAAAAATTTTAAAAAATCATGAACCGTAAAAAGTTTCGAA
444 GAAAAAATTTTAAAAAATCCCGAACC-CAAAAAGTTTCGAA
20360844 CCATAAAAAA
Statistics
Matches: 3579, Mismatches: 398, Indels: 172
0.86 0.10 0.04
Matches are distributed among these distances:
879 3 0.00
881 97 0.03
882 2 0.00
883 2 0.00
884 2 0.00
885 749 0.21
886 6 0.00
887 2 0.00
888 2 0.00
889 1 0.00
891 5 0.00
892 327 0.09
893 456 0.13
894 5 0.00
895 29 0.01
896 21 0.01
897 42 0.01
898 1 0.00
899 1 0.00
900 5 0.00
901 262 0.07
902 207 0.06
903 14 0.00
904 465 0.13
905 410 0.11
906 330 0.09
907 129 0.04
908 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
CCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCTCGCTCGTTTCATCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTTGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
Found at i:20359458 original size:26 final size:26
Alignment explanation
Indices: 20359422--20359474 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20359412 GTTGACTTAG
*
20359422 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20359448 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20359474 G
1 G
20359475 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20360835 original size:17 final size:17
Alignment explanation
Indices: 20360813--20360879 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
20360803 GAAAAAATTT
*
20360813 TAAAAAATCATGAACCG
1 TAAAAAATCTTGAACCG
* *
20360830 TAAAAAGT-TTCGAACCA
1 TAAAAAATCTT-GAACCG
*
20360847 TAAAAAATCCTGAACCG
1 TAAAAAATCTTGAACCG
*
20360864 TAAAACATCTTGAACC
1 TAAAAAATCTTGAACC
20360880 CACCTACCAC
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
16 1 0.03
17 38 0.95
18 1 0.03
ACGTcount: A:0.48, C:0.21, G:0.10, T:0.21
Consensus pattern (17 bp):
TAAAAAATCTTGAACCG
Found at i:20362078 original size:26 final size:26
Alignment explanation
Indices: 20362042--20362120 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20362032 GTTGACTTAG
*
20362042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20362068 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20362094 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20362120 G
1 G
20362121 ATCGGACTAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:20363953 original size:159 final size:158
Alignment explanation
Indices: 20363678--20364026 Score: 466
Period size: 159 Copynumber: 2.2 Consensus size: 158
20363668 GACCGGCTGG
* * * *
20363678 CTTAGGCATACGAAGTTCATTCCCAGTCTAGGATCAGACCTGCTGAGCGTTTCGGCAGCAAGATC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGCTGAGCGTTGCGGCAGCAAGATC
* **
20363743 AACAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGACTGA
66 AACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGACTGA
*
20363808 GCGCCCGCACGCTCATTTCGTGGGTTGA
131 GCGCCCGCACGCTCATTTCATGGGTTGA
* ** * * *
20363836 CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATTGGATCGGGCTGAGGGTTGCGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGCTGAGCGTTGCGGCAGCAAGAT
* * * * *
20363901 CAGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGT-GCATGCTGCCCCTCTGGCCGGCT
65 CAACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT-TCGCATCCCGCCCCTCTGGCCGACT
* *
20363965 GAGCGCCCGCATGTTCATTTCATGGGTTGA
129 GAGCGCCCGCACGCTCATTTCATGGGTTGA
* *
20363995 CTTAGGCGTAAGGAGTTCATTCCCAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20364027 CATACAGAGT
Statistics
Matches: 165, Mismatches: 24, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
158 33 0.20
159 131 0.79
160 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.22
Consensus pattern (158 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGCTGAGCGTTGCGGCAGCAAGATC
AACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGACTGA
GCGCCCGCACGCTCATTTCATGGGTTGA
Found at i:20364915 original size:26 final size:26
Alignment explanation
Indices: 20364879--20364957 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
20364869 GTTGACTTAG
20364879 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
*
20364905 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
*
20364931 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
20364957 G
1 G
20364958 ATCAGATCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTTTAA
Found at i:20366701 original size:26 final size:26
Alignment explanation
Indices: 20366665--20366743 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
20366655 GTTGACTTAG
*
20366665 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
* * *
20366691 GCATATGGAGTTCATTCCTAGTTTTA
1 GCATACGGAGTTCATTCCCAGTTTAA
*
20366717 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
20366743 G
1 G
20366744 ATCAGACTGA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTTTAA
Found at i:20366842 original size:11 final size:11
Alignment explanation
Indices: 20366828--20366853 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
20366818 GGGCACCATT
20366828 GCCGGAGCATC
1 GCCGGAGCATC
20366839 GCCGGAGCATC
1 GCCGGAGCATC
20366850 GCCG
1 GCCG
20366854 AATAACCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.38, G:0.38, T:0.08
Consensus pattern (11 bp):
GCCGGAGCATC
Found at i:20367412 original size:4 final size:4
Alignment explanation
Indices: 20367403--20367432 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
20367393 TCGACGTAGT
20367403 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
20367433 TTGTTTCGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:20368363 original size:26 final size:26
Alignment explanation
Indices: 20368334--20368386 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20368324 GTTAACCTAG
20368334 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
20368360 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20368386 G
1 G
20368387 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20369407 original size:727 final size:720
Alignment explanation
Indices: 20368360--20369835 Score: 2188
Period size: 727 Copynumber: 2.0 Consensus size: 720
20368350 CCCAGTCTAA
* * *
20368360 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGG
* ** *
20368425 CTCGGGCATGTGCTGGTACCGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTACCACATTTTTCTTCACTGGGGCACCATCACCGGAGCATCACCGGAGA
* * *
20368490 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGGTGTGCGCTCATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTA
* *
20368555 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACTTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCAATCCCTCATCAAACTTAGAGAACTCAC
*
20368620 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTACAGCCAGTAGCCATTAAAGTGTCTGAAAT
*
20368685 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
326 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
* ** * * * *
20368749 GTGCCTGCCAAAAAAAATACGAGGATCATGTCTACTAAGTTTGGGGCCAAAAATCCATCCGAAAA
391 GTGCATGCCAAAAAAAATAAAAGGATCATGACCACCAAGTTTGGGGCCAAAAATCCATCCAAAAA
* ** *
20368814 AATTTTAAAAAATCTCAAACCA-CAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTC
456 AATTTTAAAAAATCCCAAA-CAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
20368878 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGGCATAAAAATGG
520 TTGCCATGAAACTTCACGCGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAAAGG
** *
20368943 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTG
585 CATTGGCATGCAGAAATACAAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGCTTG
* *
20369008 CGCATCCCGTCTCTCTAGTAGACGTAGTGCCCGACCGCCTGCCCGCCCGCCCGCCCACTCGTTTC
650 CGCATCCCATCTCTCTAGCAGACGTAGTG--C--CCGCCTGCCCGCCCGCCCG----CTCGTTTC
20369073 GTCGGATGGCTTAG
707 GTCGGATGGCTTAG
* * * *
20369087 GCATACGGAGTCCATTCCCAATCTAAGATCAGACCTGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGG
* * * *
20369152 GTCGGGCATGTGCTAGG-GCCACATTTTTCTTC-GTCGGGGCACCATTACCGGAGCATCACCGGA
66 CTCGGGCATGTGCT-GGTACCACATTTTTCTTCACT-GGGGCACCATCACCGGAGCATCACCGGA
* * *
20369215 GAATCTGACTGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
20369280 TACGGTGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACTTTAG-GAACT
194 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCAATCCCTCATCAAAC-TTAGAGAACT
* * * *
20369344 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAACGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTACAGCCAGTAGCCATTAAAGTGTCTGA
* * *
20369409 AATGAGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTT
323 AATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
20369474 TTTGTGGATGCCAACAAAAATAAAAGGATCATGACCACCAAGTTTGGGGCCAAAAATCCTTCCAA
388 TTTGTGCATGCCAAAAAAAATAAAAGGATCATGACCACCAAGTTTGGGGCCAAAAATCCATCCAA
* * *
20369539 AAAAATTTTAAGAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
453 AAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
20369604 TCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAAA
518 TCTTGCCATGAAACTTCACGCGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAAA
*
20369669 GGCATTGGCATGCAGAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
583 GGCATTGGCATGCAGAAATACAAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGCT
* * * * * * *
20369734 TGCGCATCCCATCTCTTTGGCCGGCGTAGTGCCCGCTTGCCCGCCCGCCCGCTCGTTTCGTCTGT
648 TGCGCATCCCATCTCTCTAGCAGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGA
20369799 TGGCTTAG
713 TGGCTTAG
20369807 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
20369836 TGGACCAAGC
Statistics
Matches: 673, Mismatches: 71, Indels: 17
0.88 0.09 0.02
Matches are distributed among these distances:
720 47 0.07
724 18 0.03
726 2 0.00
727 341 0.51
728 265 0.39
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (720 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTACCACATTTTTCTTCACTGGGGCACCATCACCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTA
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCAATCCCTCATCAAACTTAGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTACAGCCAGTAGCCATTAAAGTGTCTGAAAT
GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
GTGCATGCCAAAAAAAATAAAAGGATCATGACCACCAAGTTTGGGGCCAAAAATCCATCCAAAAA
AATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGCGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAAAGGC
ATTGGCATGCAGAAATACAAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGCTTGC
GCATCCCATCTCTCTAGCAGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGATGG
CTTAG
Found at i:20373214 original size:25 final size:26
Alignment explanation
Indices: 20373163--20373214 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20373153 GTTGACTTAG
20373163 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20373189 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20373214 G
1 G
20373215 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20377074 original size:903 final size:905
Alignment explanation
Indices: 20372430--20378276 Score: 8049
Period size: 902 Copynumber: 6.5 Consensus size: 905
20372420 AGGATCGACA
** * * *
20372430 GCATTGGGGTTCC-AAGATCGAGGGGGCCGAGGGGGGTGTCCGCACATGATGTGCGATGGGTGCT
1 GCATTGGGGTTCCGGTGATCGGGGGGGCCGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
20372494 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCGC-TAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-CTTAA
* *
20372558 AGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
* *
20372623 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAA
* *
20372688 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAC-AAAACTCCCTCCGAAAAAATTTTAAAA
260 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CTAAAACTCCTTCCGAAAAAATTTTAAAA
** * * * *
20372752 AAT-CTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAA
324 AATCCT-GAACCGTAAAAAGTTTCAAAAATAGTGAAAAATGGAAAACGAGTCGTCTTGCCTTGAA
*
20372816 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
388 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
20372881 TAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCAC-GCTTGCGCATCCCAT
453 CAGAAATATGAAGATGTGCCTCAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCAT
* * * ** * * * * * *
20372944 CTCTCTGGCC-AGCATAGTGCCTGCCCACACGCCTGCCTGTTCGTTTCGTCGATTGGCTTGGGCA
518 CTATCTGGCCGA-CGTAGTGCCCGCCGGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** ** * * **
20373008 TACGGAGTTCATTCCCAGTGTAAGATTGGA-TGGATTGAGGGTTG-TGACAGCAGGATCGACAAT
582 TACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGAAG-CAGCAGGATCGGCAGC
* * ** * ** **
20373071 ACGCAGAGGGGGACCCGATCGATCATCAGCTTGCGCATCCGGCCCCTCTGGCATGCTGAGCGCCC
646 ACACAGAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
* *
20373136 GCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
711 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * ** * * **
20373201 CATTCCAGTCTAAGATCGGATCAGACCGAGGGTTACGATAGCACCTGCTGGGCTCAGGTGTGTGC
776 CATCCCATTGTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* ** ** * *
20373266 TGGTGCTGCATTTTTCTTCACCAAGGCACCATTGCCAGAGCATCGTCGGAGAACCTGATC-GGCG
841 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCAGGCG
* * * * *
20373330 GCATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGCGGTGTGTGCACATGATGTGCGATGGGTGT
1 GCATTGGGGTTCCGGTGATCGGGGGGGCCGCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGC
** * *
20373395 TGGTACTTGGCCCTTATGCTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCTCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
20373460 AGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
*
20373525 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTAATTTGTGCATGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAA
* * * *
20373590 CAACAATACAAGGATCATGTCTACAAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTT-AAAA
260 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
20373654 ATCTTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATGG-AAACGAGTCGTCTTGGCTTGAAAC
325 ATCCTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATGGAAAACGAGTCGTCTTGCCTTGAAAC
*
20373718 TTCATGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCACGCA
390 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
*
20373781 GAAATATTGAAGATGTGCCTCAA-CCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
455 GAAATA-TGAAGATGTGCCTCAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCATC
* * * *
20373845 TATCTGGCCGGCGTAGTGCCCGTCGGCTCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCGTA
519 TATCTGGCCGACGTAGTGCCCGCCGGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
20373910 CAGAGTTCATTACCAGTCTAAGATTGTACTAGACCGAGGGTTGAAGAAGCAGGATCGGCAGCACA
584 CAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGAAGCAGCAGGATCGGCAGCACA
* ** * * * *
20373975 TAGAGGAGGACCCGGCCGATCCTCGGCTTACGCATCCCACCCCTCTGACCGGCTGAGCGCCCGTA
649 CAGAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
* *
20374040 CGCTCGTTTCGTGGGTTGACTTAGGCTTAGGGAGTTCATTCCCTA-TCTAAGCATACGGAGTTCA
714 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCA
* * *
20374104 TTCCCAGTT-TAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTAGGCTCGGGCATGTGC
778 -TCCCA-TTGTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
*
20374168 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCA-GCA
841 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCAGGCG
* ** *
20374232 GCATTGGGGTTTC-GACATCGGGGGGGCCGGTGGGGGGCTGTGCGCACATGATGTGCGATGGGTG
1 GCATTGGGGTTCCGGTGATCGGGGGGGCC-GCGGGGGG-TGTGCGCACATGATGTGCGATGGGTG
* *
20374296 CTGGTACTTGGCCATTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
20374361 AAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
*
20374426 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTAATTTGTGCATGCCA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCA
* * * ***
20374491 ACAAAAATAAAAGGATCACGTCTACCAAATTTGGGGCTAAAACTCGTTTAAAAAAAATTTTAAAA
259 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAA
* *
20374556 AATCCTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATGGAAAATGAGTCGTCTTGCCTTGAAG
324 AATCCTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATGGAAAACGAGTCGTCTTGCCTTGAAA
*
20374621 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
20374686 AGAAATATGAAGATGTGCCTCAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCATC
454 AGAAATATGAAGATGTGCCTCAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCATC
* * * *
20374751 TATCTGGCCGACGTAGTGCCCACCGGCCCGCCCGCTTGCTCGTTTCATTGGTTGGCTTAGGCGTA
519 TATCTGGCCGACGTAGTGCCCGCCGGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATA
20374816 CAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGAAGCAGCAGGATCGGCAGCACA
584 CAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGAAGCAGCAGGATCGGCAGCACA
* * * *
20374881 CAGAGGAGGACCCGATCGATCCCCGGCTTCCGCATCCCACCCTTTTGGCCGGCTGAGCACCCGCA
649 CAGAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
20374946 CGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACAGAGTTTAG
714 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-
* * * * * *
20375011 TCCCATTGTAAGATTGGATCGGACCCAGGGTTGCGGCAGCACATGCT-GGCTCGAGCAAGTGTTG
778 TCCCATTGTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * * *
20375075 GAGCCCCATTTTTCTTTGTCGGTGCACCATCACCAGAGCATCGCCGGAGAACCTCA-CAGACG
843 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCAGGCG
* * * ** *
20375137 GCATTGGGGTTCTGATGATCGAGGCTGCCG-GGGGGGTGTGCGCACATGATGTACGATGGGTGCT
1 GCATTGGGGTTCCGGTGATCGGGGGGGCCGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
20375201 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
20375265 GAGCATTTGGAGATTTTATAGGTTTGCTGCGCAAGTAGC-ATTAAAGTGTCTAAAAT-GGGACCA
131 GAGCATTT-GAGATTTTACAGGTTTGCTGC-C-AGTAGCAATTAAAGTGTCTGAAATGGGGA-CA
* *
20375328 CTTTTTTCCAAATGGTCCACAAAATCTTGTACACTTCGAGGTTTTGAGCTAAATTATTTTGTGCA
192 CTTTTTT-CAAATGGT-CACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTATTTTGTGCA
* *
20375393 TGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCTTTCCGAAAAAAAT
254 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCC-TTCCG-AAAAAAT
*
20375458 TTT-AAAAATCCCTGAACCCGTAAAAAGTTTCAAAAATAGTGAAAAATGGAAAACGAGTCGTCTG
317 TTTAAAAAAT-CCTGAA-CCGTAAAAAGTTTCAAAAATAGTGAAAAATGGAAAACGAGTCGTCTT
20375522 GCCTTTGAAAC-TCACAGTGAAGGCTTAA-GGACCATTGTATGAATTTTACAAGCCATAAAAATG
380 GCC-TTGAAACTTCAC-GTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATG
* * *
20375585 GCATTGGCATTGCAGAAATATGAAGATGTGCCGTCAACCCACCGACCACCGTACCGGATCCACGG
442 GCATTGGCA-CGCAGAAATATGAAGATGTGCC-TCAACCCACCGACCACCCTATC-GATCCACGG
* *
20375650 CTTGCGCATCCCGTCTGAGCTGGCCGGACGGTAGTGGCCCGCCGGCCCGCCCGCTTGCTCGTTTC
504 CTTGCGCATCCCATCT-ATCTGGCC-GAC-GTAGT-GCCCGCCGGCCCGCCCGCTTGCTCGTTTC
* *
20375715 GTCGGTTGGCTTAGGCGTACAGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGAAG
565 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGAAG
** ** *
20375780 CAGCAGGATCGGCAGCACACAGAGGAGGACTTGGCCGATCCTCGGCTTGCGCATCCCACCCCTCT
630 CAGCAGGATCGGCAGCACACAGAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCT
*
20375845 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCTA-
695 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AG
* * **
20375909 TCTAAGCATACGGAGTTCATTCCCATTTTAAGATCGGACCGGACCGAGGGTTACGATAGCACATG
759 TCTAAGCATACGGAGTTCA-TCCCATTGTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATG
* *
20375974 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
823 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTC
20376039 GGAGAACCTGACCA-GCG
888 GGAGAACCTGACCAGGCG
** *
20376056 GCATTGGGGTTTTGG-CATCGGGGGGGCCTGCGGGGGGCTGTGCGCACATGATGTGCGATGGGTG
1 GCATTGGGGTTCCGGTGATCGGGGGGGCC-GCGGGGGG-TGTGCGCACATGATGTGCGATGGGTG
* * *
20376120 CTGGTACTAGGCCATTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
20376185 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACA
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
*
20376250 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTAATTTGTGCATGCCA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCA
*
20376315 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCTAAAACTCCTTCCGAAAAAATTTTAAAA
259 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAA
20376380 AATCCTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATGGAAAACGAGTCGTCTTGCCTTGAAA
324 AATCCTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATGGAAAACGAGTCGTCTTGCCTTGAAA
20376445 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
20376510 AGAAATATGAAGATGTGCCTCAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCATC
454 AGAAATATGAAGATGTGCCTCAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCATC
* * * * *
20376575 TATCTGGCCGACGTAGTGCCTGCCTGCCCGCCCGCTTGCTCATTTCATCGATTGGCTTAGGCATA
519 TATCTGGCCGACGTAGTGCCCGCCGGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
20376640 TAGAGTCCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGAAGTAGCAGGATCGGCAGCACA
584 CAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGAAGCAGCAGGATCGGCAGCACA
* * *
20376705 CAGAGGAGGACCCGGTTGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTGAGCGCCCGCA
649 CAGAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
** *
20376770 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTTAG
714 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-
* * * *
20376835 TCCCATTGTAAGATCGGATCAGACCCAGGGTTGCGGCAGCACATGCT-GGCTCGGGCAAGTGCTG
778 TCCCATTGTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * * *
20376899 GAGTCGCATTTTTCTTTGTCGGGTCACCATCGCCGGAGCATCGCCGAAGAACCTCA-CAGGCG
843 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCAGGCG
*
20376961 GCATTGGGGTTCCGGTGATCGGGGCGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1 GCATTGGGGTTCCGGTGATCGGGGGGGCCGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
20377025 AGTACATGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCACA-CCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
20377089 GAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCAATTAAAGTGTCTGAATTAGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
** * * * *
20377154 TTTCAAATATTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTCTACATGCCAAC
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAC
* * * *
20377219 AAAAATACAAGGATGACATCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAA
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * ** * * *
20377284 TCTTGAATCGTAAAAAGTTTTGAAAATCA-TGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAC
326 TCCTGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATGGAAAACGAGTCGTCTTGCCTTGAAAC
** * *
20377348 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATGAAAATGGCATTGGCACGTA
390 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * * *
20377413 GAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
455 GAAATATGAAGATGTGCCTCAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCATCT
* ** * *
20377478 CTCTGGCCGACGTAGTG-CCGCCCTCCTG-CC-C--GCTCGTTTCGTGGGTTGGCTTAGGCATAC
520 ATCTGGCCGACGTAGTGCCCGCCGGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * ** * * * **
20377538 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCA-GATTGGCAACACGT
585 AGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGAAGCAGCAGGATCGGCAGCACAC
* * * * *
20377602 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGTTTAGCGCCCGCAC
650 AGAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCAC
20377667 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T-----TA---AG---AT-
715 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATC
*
20377719 -C---G---GA-C----CGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT
780 CCATTGTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
20377772 GCCACATTTTTCTTCGTTGGGGCACCATCGCCAGAG-AGTCATCGGAGAACCTGACC-GGCG
845 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCA-TCGTCGGAGAACCTGACCAGGCG
*
20377832 GCATTGGGGTTCCGG-CATCGGGGGGGCCGGCGGGGGGCTGTGCGCACATGATGTGCGATGGGTG
1 GCATTGGGGTTCCGGTGATCGGGGGGGCC-GCGGGGGG-TGTGCGCACATGATGTGCGATGGGTG
* * *
20377896 CTGGTACCTGGCCATTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
20377961 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTTTGAAATGGGGACACT
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
* *
20378026 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCA
* * * * * * *
20378091 AAAAAAATAGAAGGATCAAGTCTACCAAGCTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAA
259 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAA
* * ** * * *
20378156 AATCCTGAACTGCAAAACA-TTTTGAAAATCA-TTAAAAATAGAAAACGAGTCGTCTTGCCATGA
324 AATCCTGAACCGTAAAA-AGTTTCAAAAAT-AGTGAAAAATGGAAAACGAGTCGTCTTGCCTTGA
*
20378219 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCA
387 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
20378277 NNNNNNNNNN
Statistics
Matches: 4437, Mismatches: 439, Indels: 168
0.88 0.09 0.03
Matches are distributed among these distances:
870 36 0.01
871 79 0.02
872 7 0.00
873 78 0.02
874 291 0.07
875 3 0.00
878 1 0.00
881 1 0.00
883 1 0.00
884 1 0.00
887 2 0.00
890 2 0.00
895 1 0.00
896 112 0.03
897 67 0.02
898 20 0.00
899 68 0.02
900 141 0.03
901 211 0.05
902 1048 0.24
903 223 0.05
904 79 0.02
905 230 0.05
906 623 0.14
907 73 0.02
908 11 0.00
909 23 0.01
910 91 0.02
911 66 0.01
912 41 0.01
913 67 0.02
914 92 0.02
915 23 0.01
916 14 0.00
917 75 0.02
918 293 0.07
919 92 0.02
920 33 0.01
921 101 0.02
922 17 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (905 bp):
GCATTGGGGTTCCGGTGATCGGGGGGGCCGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATGGAAAACGAGTCGTCTTGCCTTGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTCAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCATCTA
TCTGGCCGACGTAGTGCCCGCCGGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATACA
GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGAAGCAGCAGGATCGGCAGCACACA
GAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCC
CATTGTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCAGGCG
Found at i:20381442 original size:903 final size:898
Alignment explanation
Indices: 20379523--20381493 Score: 2714
Period size: 897 Copynumber: 2.2 Consensus size: 898
20379513 AAACGAGTTT
* *
20379523 ATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCCTTTAAGGGGGTGTGAGTTCTCGAGG
1 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT-CTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20379588 TTTTGATGAGGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGC
65 -TTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGC
* * ** *
20379653 GCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATTCCACCGGTCAGGTTCCCCGGTGTT
128 GCACACCCCCC-CGG-CCCCCCGATCGCCGGAACCCCAATTCCACCGGTCAAGTTCCCCGACGAT
* *
20379718 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCATATGCCCGAGCCCAGCATGTG
191 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
20379783 CTGTCACAACCCTCGATCAGGTCTGATCTTACACTGGGAATGAACTCCGTATGGTTAGATTGGGA
256 CTGCCACAACCCTCGATCAGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * *
20379848 ACGAACTCCGTATGCCTAAGTCAACACACGAAATGAGCGTACGGGCGTTCAGCCGGCCAGAGGGG
321 ACGAACTCCGTATGCCTAAGTCAACACACAAAATGAGCATACAGGCGCTCAGCCAGCCAGAGGGG
* * * *
20379913 TGGGATACGCAAGCCAGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACCATAAC
386 CGAGATACGCAAGCCAGGGATCAGTCGGGTCCCCATCTGCGTGCTGCCGATCTGGCTACCATAAC
* ** *
20379978 CCTCAACTCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGA
451 CCTCAACTCGGTCTGATCTTAGACTAGGAATGAACTCTATATGCCTAAGCCAACCAACGAAACAA
* * *
20380043 GCAGGCGGGTGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGG
516 GCAGGCGGGTGGGCGGGCACTATGCCAGCCAGAGAGACGGGACGCGCAAGCCGTGGATCAATAGG
* * * *
20380108 GTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGTGCGCCAATGCCATTTTTATGGCTTGTAA
581 GTGGAAGGTGGATTTAAGCACATCTTCAAATTTCTGCGCGCCAATGCCATTTTTATGGCTTGTAA
* *
20380173 ATTCATATAATGGTCGCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
646 ATTCATACAATGGTCGCCTAAGCCTTCACGGGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
20380238 TTTACGATTTTTTAAACTTTTTATGGTTCGAGATTTTGTAAAATTTTTTCAAAGGAGTTTTGGGT
711 TTCACGATTTTTTAAACTTTTTACGATTCGAGATTTTGTAAAATTTTTTCAAAGGAGTTTTGGGC
* *
20380303 AAAACCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGT
776 AAAACCTTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
20380368 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
841 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
20380426 ATGGCTATTGGCAGCAAACCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGT
1 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
20380491 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTACCCATCGCACATCATGTGCGCA
66 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCA
* * *
20380556 CA-CCCCCCAGCCCCCCGATCGCCGGAACCCCAATAT-CGCCGGTCAAGTTCTCCGACGATGCTC
131 CACCCCCCCGGCCCCCCGATCGCCGGAACCCCAAT-TCCACCGGTCAAGTTCCCCGACGATGCTC
* * *
20380619 CGGTGATGGTGCCCTGGTC-AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
195 CGGTGATGGTGCCC-CGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
*** ** *
20380683 CCGTTACCCTC-AGTCTA-GTCCGATCTTTGACTGGGAATGAACTCCGTATGCTTGGACTGGGAA
259 CCACAACCCTCGA-TC-AGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
20380746 TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTATGCAGGCGCTCAGCTAGCCAGCA-GGG
322 CGAACTCCGTATGCCTAAGTCAACACACAAAATGAGCATACAGGCGCTCAGCCAGCCAG-AGGGG
* * * * **
20380810 CGAGATGCGCAAGCCAGGGATCGAG-CGGGTCCCCATCTGCTTGCTGTCGAT-TCGGCTGCTGTA
386 CGAGATACGCAAGCCAGGGATC-AGTCGGGTCCCCATCTGCGTGCTGCCGATCT-GGCTACCATA
** * *
20380873 ACCCTC-GGTCTGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCAACGAAG
449 ACCCTCAACTC-GGTCTGATCTTAGACTAGGAATGAACTCTATATGCCTAAGCCAACCAACGAAA
* * *
20380937 CAAGCGGGTGGGTGGACGGGCGGGCACTATGCCAGCCAGAGAGACGGGACGTGCAAGCCGTGGAT
513 CAAGCAGGCGGGT----GGGCGGGCACTATGCCAGCCAGAGAGACGGGACGCGCAAGCCGTGGAT
* * * *
20381002 -AGATAGGGTGGAAGGTGGGTTTAAGCACATCTTTAAATTTTTGCGTGCCAATGCCATTTTTATG
574 CA-ATAGGGTGGAAGGTGGATTTAAGCACATCTTCAAATTTCTGCGCGCCAATGCCATTTTTATG
* * *
20381066 GCTTGTAAATTTATACAATGGTC-CCTTAAGCCTTCATGGGAAGTTTCATGGTAAGACGACTCGT
638 GCTTGTAAATTCATACAATGGTCGCC-TAAGCCTTCACGGGAAGTTTCATGGCAAGACGACTCGT
* *
20381130 TTTCTATTTTTCATGATTTTTTGAAACTTTTTACGATTCTG-GATTTT-TAAAAATTTTTTCGGA
702 TTTCTATTTTTCACGATTTTTT-AAACTTTTTACGATTC-GAGATTTTGT-AAAATTTTTTC-AA
*
20381193 AGGCGTTTT-GGCACCAAA-CTTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAAAA
763 AGGAGTTTTGGGCA--AAACCTTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAAAA
* * * *
20381256 ACTT-AGCTAAAAACTTGAATTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTTA
826 A-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
20381320 GACACTTTA
890 GACACTTTA
* * *
20381329 ATGGCTACTAGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGT
1 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
20381394 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAACACCCATCGCACATCATGTTCACA
66 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCA
* *
20381459 CACCCCCCCGGCCCCCCGATCGCCAGAACCGCAAT
131 CACCCCCCCGGCCCCCCGATCGCCGGAACCCCAAT
20381494 CGTCGGGCCA
Statistics
Matches: 944, Mismatches: 102, Indels: 43
0.87 0.09 0.04
Matches are distributed among these distances:
896 4 0.00
897 313 0.33
898 9 0.01
899 5 0.01
900 60 0.06
901 183 0.19
902 60 0.06
903 276 0.29
904 34 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCA
CACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATTCCACCGGTCAAGTTCCCCGACGATGCTCC
GGTGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
ACAACCCTCGATCAGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAACGAA
CTCCGTATGCCTAAGTCAACACACAAAATGAGCATACAGGCGCTCAGCCAGCCAGAGGGGCGAGA
TACGCAAGCCAGGGATCAGTCGGGTCCCCATCTGCGTGCTGCCGATCTGGCTACCATAACCCTCA
ACTCGGTCTGATCTTAGACTAGGAATGAACTCTATATGCCTAAGCCAACCAACGAAACAAGCAGG
CGGGTGGGCGGGCACTATGCCAGCCAGAGAGACGGGACGCGCAAGCCGTGGATCAATAGGGTGGA
AGGTGGATTTAAGCACATCTTCAAATTTCTGCGCGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCGCCTAAGCCTTCACGGGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTTTAAACTTTTTACGATTCGAGATTTTGTAAAATTTTTTCAAAGGAGTTTTGGGCAAAAC
CTTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
Found at i:20382241 original size:768 final size:772
Alignment explanation
Indices: 20380738--20382243 Score: 2170
Period size: 768 Copynumber: 2.0 Consensus size: 772
20380728 GTATGCTTGG
* * * *
20380738 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTATGCAGGCGCTCAGCTAGCC
1 ACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGACGCTCAGCTAGCC
* * * * * *
20380803 AGCAGGGCGAGATGCGCAAGCCAGGGATCGAGCGGGTCCCCATCTGCTTGCTGTCGATTCGGCTG
66 AGCAGGGCGAGATGCACAAACCAGGGATCGAGCGGGTACCCATCTACGTGCTGTCGATCCGGCTG
* * * *
20380868 CTGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCAAC
131 CCGCAACCCTCGGTCTGGTCAGATCATAGACTGGGAATGAACTCTATATGCCTAAGCCAACC-AC
* * * * *
20380933 GAAGCAAGCGGGTGGGTGGACGGGCGGGCACTATGCCAGCCAGAGAGACGGGACGTGCAAGCCGT
195 GAAGCAAGCGAGCGGGCGGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGACGCGCAAGCCGT
* * *
20380998 GGATAGATAGGGTGGAAGGTGGGTTTAAGCACATCTTTAAATTTTTGCGTGCCAATGCCATTTTT
260 GGATAGATAGGGTGGAAGGTGGGTTTAAGCACATCTTCAAATCTCTGCGTGCCAATGCCATTTTT
* * *
20381063 ATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCATGGGAAGTTTCATGGTAAGACGACTC
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGGGAAGTTTCATGGCAAGACGACTC
* * *
20381128 GTTTTCTATTTTTCATGATTTTTTGAAACTTTTTACGATTCTGGATTTTTAAAAATTTTTTCGGA
390 GTTTTCTATTTTTCACGATTTTTTGAAACTTTTTACGATTCGGGATTTTTAAAAATTTTTTCGAA
* * *
20381193 AGGCGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAAAAAC
455 AGGAGTTTTGGCACCAAACCTGGTAGACGAGATCCTTGTATATTTGTTGGCATGCACAAAAAAAC
* ** * *
20381258 TTAGCTAAAAACTTGAATTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTTAGAC
520 TTAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
20381323 ACTTTAATGGCTACTAGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
585 ACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
* *
20381388 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAACACCCATCGCACATCATG
650 CGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATG
*
20381453 TTCACACACCCCCCCGGCCCCCCGATCGCCAGAACCGCAATCGTCGGGCCAATTTCAA
715 TGCACACACCCCCCCGGCCCCCCGATCGCCAGAACCGCAATCGTCGGGCCAATTTCAA
* * *
20381511 ACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGACGCTCAGCTGGCT
1 ACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGACGCTCAGCTAGCC
* * * * * * *
20381576 AG-AGGGGTGGGATGCACAAATCGGGGATCGATCGGGTACCCTTCTACGTGCTGTCGATCCTGCT
66 AGCA-GGGCGAGATGCACAAACCAGGGATCGAGCGGGTACCCATCTACGTGCTGTCGATCCGGCT
* * *
20381640 GCCGCGACGCTCGGT-TCGGTCAGATCATAGACTGGGAATGAACTCTGTATGCCTAAGCCAA-C-
130 GCCGCAACCCTCGGTCT-GGTCAGATCATAGACTGGGAATGAACTCTATATGCCTAAGCCAACCA
* * *
20381702 CGATG-AATCGAGCGGGCGGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCG
194 CGAAGCAAGCGAGCGGGCGGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGACGCGCAAGCCG
* * * * *
20381766 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTGTGTGCCAATGCCATTTT
259 TGGATAGATAGGGTGGAAGGTGGGTTTAAGCACATCTTCAAATCTCTGCGTGCCAATGCCATTTT
* * *
20381831 TGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGGGAAGTTTCATGGCAAGACGACT
* * *
20381896 CGTTTTCTATTTTTCACGA-TTTTTGAACCTTTTT--GTAGTTCGGGATTTTTTAAAATTTTTTT
389 CGTTTTCTATTTTTCACGATTTTTTGAAACTTTTTACG-A-TTCGGGATTTTTAAAAATTTTTTC
* *
20381958 GAAAGGAGTTTTGGCCCCAAACCTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCA-AAAAA
452 GAAAGGAGTTTTGGCACCAAACCTGGTAGACGAGATCCTTGTATATTTGTTGGCATGCACAAAAA
* *
20382022 ATA-TTCAGCTAATAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTT
517 A-ACTT-AGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
20382086 CAGACACTTTAATTGCTACT-GACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
580 CAGACACTTTAATGGCTACTAG-CAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTG
* *
20382150 AGTTCTTGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCAC
* *
20382215 ATCATGTGCACACAGCCCCTCGGCCCCCC
709 ATCATGTGCACACACCCCCCCGGCCCCCC
20382244 CAATCATCGG
Statistics
Matches: 649, Mismatches: 77, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
766 1 0.00
767 10 0.02
768 286 0.44
769 186 0.29
770 4 0.01
772 3 0.00
773 159 0.24
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (772 bp):
ACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGACGCTCAGCTAGCC
AGCAGGGCGAGATGCACAAACCAGGGATCGAGCGGGTACCCATCTACGTGCTGTCGATCCGGCTG
CCGCAACCCTCGGTCTGGTCAGATCATAGACTGGGAATGAACTCTATATGCCTAAGCCAACCACG
AAGCAAGCGAGCGGGCGGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGACGCGCAAGCCGTG
GATAGATAGGGTGGAAGGTGGGTTTAAGCACATCTTCAAATCTCTGCGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGGGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTTGAAACTTTTTACGATTCGGGATTTTTAAAAATTTTTTCGAAA
GGAGTTTTGGCACCAAACCTGGTAGACGAGATCCTTGTATATTTGTTGGCATGCACAAAAAAACT
TAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGT
GCACACACCCCCCCGGCCCCCCGATCGCCAGAACCGCAATCGTCGGGCCAATTTCAA
Found at i:20382414 original size:25 final size:26
Alignment explanation
Indices: 20382379--20382430 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
20382369 CCGGTCCGAT
20382379 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20382405 CTTAG-CTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20382430 C
1 C
20382431 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20384190 original size:26 final size:26
Alignment explanation
Indices: 20384161--20384213 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20384151 CCAATCCGAT
20384161 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20384187 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20384213 C
1 C
20384214 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20384825 original size:886 final size:892
Alignment explanation
Indices: 20381511--20387597 Score: 8027
Period size: 901 Copynumber: 6.8 Consensus size: 892
20381501 CCAATTTCAA
* ** * * * *
20381511 ACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGACGCTCAGCTGGCT
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * ** * * * *
20381576 AGAGGGGTGGGATGCACAAATCGGGGATCGATCGGGTACCCTTCTACGTGCTGTCGATCCTGCTG
66 AGAGAGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTTCTA
* * * * * *
20381641 CCGCGACGCTCGGT-TCGGTCAGATCATAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGA
131 CCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
20381705 TGAATCGAGCGGGCGGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
195 CGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* **
20381770 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTGTGTGCCAATGCCATTTTTGTG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTG
* *
20381835 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTT
* * ** * *
20381900 TTCTATTTTTCACGATTTTTGAACCTTTTTGTAGTTCGGGATTTTTTAAAATTTTTTTGAAAGGA
390 TTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
20381965 GTTTTGGCCCCAAACCTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCA-AAAAAATATTCA
455 TTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCA
* * *
20382029 GCTAATAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
20382094 TTAATTGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
20382159 GGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * *
20382224 ACACAGCCCCTCGGCCCCCCCAATCATCGGAACCCCAAT-GCCTCTGGTTAGGTACTCCGGTGAT
714 GCACA-CCCCTCGGCCCCCCCGATCGTCGGAACCCCAATCG-C-C-AGTCA-GT-CTCAGGT--T
* * **
20382288 GCTCCGATGATGGTG-CCCGACGAAGAAAAATGCGGCACTAGCACATGTTCGAGCCCAGCATGTG
771 -CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * * * * *
20382352 CTACCACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
835 CTGTCGCAAACCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* *
20382410 -CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCCCAGCCGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
20382474 AGA-AGGGGGGATGCACAAGTCGGGGATCGGTCGGATCCCCCTCTCCGTGCTGTCGAT-CTTGCT
66 AGAGAGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTT-CT
** ** * *
20382537 ACCATAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGA
130 ACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
20382602 CGAAACGAGCAGGCGGACGGGCGGGCGGGCACTACGCCGGCCATAGAGACGGGACGCGTAAGTCG
195 CGAAAC--G-A-GCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
20382667 TGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTT-TCGCATGCCAATGCCATTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTT
* * * * * *
20382731 TTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGTAGGCCGAC
320 TTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGAC
** * *
20382796 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAACTTTTTCGG
385 TCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
20382861 GAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
450 AAGGATTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * ** * *
20382926 TTCAGCCACAAACTTGAAGTGTACAAGATTTTGTGACCATTTTTAAAATGTGTCCCCATTTCAGG
515 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
20382991 TACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
20383056 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCGCATCAT
645 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
20383121 GTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCAGCG
710 GTGCGCACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAAT--CGCCAGTCA-G-TCT-CAG-G
* * * *
20383186 ATGCTCCGGCGATGGTGCCCCGACGAAGATAAATGCGGCACCAGCACATGCCTGAGCCCAGCATG
769 -TTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
** * * ** * * *
20383251 TGCTACCGCAACCCTTGGTCCAGTCCGATCTTAGACTCCGAATGAACTCCGTGTACTTAG
833 TGCTGTCGCAAACCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* *
20383311 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * ** **
20383376 AGAGGGGCGGGACGCACAAGCCGAGGATCG-GCTGGGTCCCCCTCTGTGTGCTACCGATCCTGT-
66 AGAGAGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTACGTGCTGTCGATCCT-TC
* ** * * * *
20383439 TGCCGCAACCCTTGGACCGGTCT-AGTCTTCGACTGGGAATGAACTCCGTATGCCTAAACCAACC
129 TACCGCAACCCTCAGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
20383503 GATGAAACGA---G-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGTCGTG
193 GACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
20383564 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATCCCAATGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTG
** * * **
20383629 TGGCTTGTAAATTCATACAATAATCCCCTAAGCCTTCACA-TGAAGTGTCATGGCAAGGTGACTC
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-AGTGAAGTTTCATGGCAAGACGACTC
* * *
20383693 GTTTTCTATTTTTCATAATTTTTGAAACTTTTTG-GGTTCAGGATTTTTTAAAATTTTTTTGGAA
387 GTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * * *
20383757 GGAGTTTTGGCCCCAAA-ATTTGTAGATGTGATCGTTGTATTGTTT-TTGGCATGCACAAAAAAA
452 GGATTTTTGGCCCCAAACA-TGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAA
* * *
20383820 ATCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTTC-G
515 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAG
20383884 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * **
20383949 CCCGAGGTTTGATGAAGGATAGGTGGCCAATATAATTGCCAAGTACCAGCACCCATCGCACATCA
644 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
20384014 TGTGCGCAC-CCCCTCGGCCCCCCCGATTGTCGGAACCCCAAT-G-CAGTC-GT-TCAGGTTCTC
709 TGTGCGCACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAATCGCCAGTCAGTCTCAGGTTCTC
* * *
20384074 CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACACGCCCGAGCCTAGCATGTGCTGT
774 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGT
* *
20384139 CG-AAACCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
839 CGCAAACCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * *
20384192 ACTGGGAATGAACTCCGTATGCCCAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAACCGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* *
20384257 AGAGAGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTTGTCGATCCTTCTA
66 AGAGAGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTTCTA
* * *
20384322 CCGCAACCCTCAGTCTGGTTTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACTGAC
131 CCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * ** *
20384387 AAAACGAGCGGACGGGCAGGCGGGCACCACGTTGGCCAGAGAGACGAGATGCGCAAGCCGTGGAT
196 GAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
20384452 TGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGG
20384517 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTT
** * *
20384582 TCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGCAT
391 TCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAT
* *
20384647 TTTTGGCCCCAAACATGGTAGACGTGAGCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
456 TTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
20384712 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTT
521 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
20384777 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
586 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* ** * * *
20384842 TTCGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTATCAGCACCCATCGCACATAATTTGCGC
651 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
** * * * *
20384907 ACACCCC-C--CCCGGCCG--C--CGAAACCTCAATGTCGTCGGTCAGGTTCTTC-GGTGATGCT
716 ACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAA--TCGCCAGTCA-G-TC-TCAGGT--T-CT
* ** * * *
20384964 CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCGGAGTATGAGTTG
773 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * ** *
20385029 TCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAG
838 TCGCAAACCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * * *
20385084 ACTGGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCACTCTGCCGCCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * ** * *
20385149 AGAAAGGCGGGATGCGCAAGTCGAGGATC-AGTCGGGTCTCGCTCTGTGCGCTGTCAAT-CTTGC
66 AGAGAGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTACGTGCTGTCGATCCTT-C
** * * * *
20385212 TACCTTAACCCTCGGTCTGGTATGATATTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACCG
129 TACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
20385277 ACGAAACAAGCAAGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
194 ACGAAAC--G--AGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
20385342 GTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
255 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
20385407 TTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGAC
320 TTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGAC
** *
20385472 TCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGG
385 TCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
20385537 AAGTATTTTTGGCCCCAAACATGGTAGACGTGAGCCTTGTATTTTTTTTGGCATGCACAAAAAAA
450 AAGGATTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
20385602 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
515 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
20385667 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * **
20385732 CCGAGGTTTGATGAAGGATAGGTGGCCAATATAATTGCCAAGTACCAGCACCCATCGCACATCAT
645 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
20385797 GTGCGCAC-CCCCTCGGCCCCCCCGATTGTCGAAACCCCAAT-G-CAGTC-GT-TCAGGTTCTCC
710 GTGCGCACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAATCGCCAGTCAGTCTCAGGTTCTCC
* * *
20385857 GACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACACGCCCGAGCCTAGCATGTGCTGTC
775 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC
* *
20385922 G-AAACCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
840 GCAAACCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * *
20385974 ACTGGGAATGAACTCCGTATGCCCAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAACCGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * *
20386039 AGAGAGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGTTGTCAATCCTTCTA
66 AGAGAGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTTCTA
* * *
20386104 CCGCAACCCTCAGTCTGGTTTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACTGAC
131 CCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * ** **
20386169 AAAACGAGCGGACGGGCAGGCGGGCACCACGTTGGCCAGAGAGACAAGATGCGCAAGCCGTGGAT
196 GAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
20386234 TGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGG
** * * * *
20386299 CTTGCGAATTCGTACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTT
* ** * * *
20386364 TCTATTTTTTATGATTTTTGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTCAGATGGAT
391 TCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAT
* * *
20386429 TTTTGGCCCCAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGC
456 TTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
20386494 TAAAAAATCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTCCAGACACTTT
521 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
20386559 AATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCCCTTTAAGGGAGTGTTAGTTCTCGAGG
586 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
20386624 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
651 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * ** **
20386689 ACATCCCCCCCGGCCCCCCCAATCGTCGGAACCCAAATGCCGCTGGTCAGGTTCTCCAGCGAAGC
716 ACA--CCCCTCGGCCCCCCCGATCGTCGGAACCCCAAT--CGCCAGTCA-G-TCT-CAG-G-TTC
* * *
20386754 TCCGACGACGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCT
772 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
20386819 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
837 GTCGCAAACCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * * * * *
20386875 ACTGCGTATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGCGCTCTGTCGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * ** *
20386940 AGAGGGGCGGGATGTGCAAGCAGGGGATCG-GCTGGGTCCCACTCTATGTGCTACCGATCCTACT
66 AGAGAGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTACGTGCTGTCGATCCTTCT
* * * *
20387004 GCCACAACCCTCAGTCCAGTTCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
130 ACCGCAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
*
20387068 ACGAAACGAGCGGGCAGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
194 ACGAAACGAGC-GG-A--CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
20387133 GTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
255 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
20387198 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAC
320 TTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGAC
* ** * *
20387263 TCGTTTCCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTCTTCGG
385 TCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * *
20387328 AAGG-TGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAC
450 AAGGAT-TTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * ** * * *
20387392 ATTCAGCTAAAAAGTCAAACCGAACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTAG
514 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
20387457 ACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** *
20387521 CTAAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
644 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
20387586 TATACGCACACC
709 TGTGCGCACACC
20387598 ATTTTTATGG
Statistics
Matches: 4572, Mismatches: 525, Indels: 179
0.87 0.10 0.03
Matches are distributed among these distances:
880 10 0.00
881 211 0.05
882 66 0.01
883 2 0.00
884 15 0.00
885 200 0.04
886 737 0.16
887 7 0.00
888 4 0.00
889 35 0.01
890 215 0.05
891 132 0.03
892 212 0.05
893 36 0.01
894 263 0.06
895 203 0.04
896 503 0.11
897 105 0.02
898 71 0.02
899 3 0.00
900 117 0.03
901 774 0.17
902 91 0.02
903 102 0.02
904 83 0.02
905 375 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
AGAGAGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTTCTA
CCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAT
TTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAATCGCCAGTCAGTCTCAGGTTCTCCGACGAT
GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAAAC
CTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
Found at i:20385972 original size:26 final size:26
Alignment explanation
Indices: 20385943--20385995 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20385933 CCAATCCGAT
20385943 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20385969 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20385995 C
1 C
20385996 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20386885 original size:26 final size:26
Alignment explanation
Indices: 20386844--20386896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20386834 CCGGTCCGAT
*
20386844 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
* *
20386870 CTTAGACTGCGTATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCATATG
20386896 C
1 C
20386897 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:20387957 original size:404 final size:404
Alignment explanation
Indices: 20387192--20388001 Score: 1246
Period size: 404 Copynumber: 2.0 Consensus size: 404
20387182 CGTGCCAATG
*
20387192 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
1 CCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
20387257 GACAACTCGTTTCCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTT
66 GACAACTCGTTTCCTATTTTTCACAATTTTCAAAACTCTTCGCAGTTCAGGATTTTTTAAAATTT
* * *
20387322 CTTCGGAAGGTGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACA
131 CTTCGGAAGGAGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTCTTGGAATGCACA
* * * * *
20387387 AAAACATTCAGCTAAAAAGTCAAACCGAACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCAT
196 AAAACATTCAGCTAAAAACTCAAACCGAACAAGATTTTGGGACAATTTGAAAAAAGTATCCCCAT
* *
20387452 TTTAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTGTG
261 TTCAGACACTTTAATTGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTGTG
20387517 AGTTCTAAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
326 AGTTCTAAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
20387582 ATCATATACGCACA
391 ATCATATACGCACA
* **
20387596 CCATTTTTATGGATTGTAAATTCATACAATTGTCTGTTAAGCCTTCACGTGAAGTTTCATGGCAA
1 CCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * ** *
20387661 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTCTTCGTAGTTC-GAGATTTTTTAAAATT
66 GACAACTCGTTTCCTATTTTTCACAATTTTCAAAACTCTTCGCAGTTCAG-GATTTTTTAAAATT
* * *
20387725 TTTTCGG-AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGAATGCAC
130 TCTTCGGAAGGAGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTCTTGGAATGCAC
* * ** * *
20387789 AAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACAATTTGATAAAAGTATCCCCA
195 AAAAACATTCAGCTAAAAACTCAAACCGAACAAGATTTTGGGACAATTTGAAAAAAGTATCCCCA
*
20387854 TTTCAGACACTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
260 TTTCAGACACTTTAATTGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTG
** *
20387919 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
324 TGAGTTCTAAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
20387984 ACATCATGTGCGCACA
389 ACATCATATACGCACA
20388000 CC
1 CC
20388002 CCCCGATCGC
Statistics
Matches: 366, Mismatches: 38, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
403 162 0.44
404 204 0.56
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (404 bp):
CCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACAACTCGTTTCCTATTTTTCACAATTTTCAAAACTCTTCGCAGTTCAGGATTTTTTAAAATTT
CTTCGGAAGGAGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTCTTGGAATGCACA
AAAACATTCAGCTAAAAACTCAAACCGAACAAGATTTTGGGACAATTTGAAAAAAGTATCCCCAT
TTCAGACACTTTAATTGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTGTG
AGTTCTAAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATATACGCACA
Found at i:20389948 original size:25 final size:25
Alignment explanation
Indices: 20389913--20389960 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
20389903 TCTGATTTTA
20389913 GACTGGAAATGAACTCCATATGCTT
1 GACTGGAAATGAACTCCATATGCTT
* *
20389938 GACTGGGAATGAACTCCGTATGC
1 GACTGGAAATGAACTCCATATGC
20389961 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (25 bp):
GACTGGAAATGAACTCCATATGCTT
Found at i:20390132 original size:26 final size:26
Alignment explanation
Indices: 20390094--20390146 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20390084 TCGATCTGAT
20390094 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
20390120 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
20390146 C
1 C
20390147 CTATGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:20390237 original size:186 final size:184
Alignment explanation
Indices: 20389903--20390299 Score: 532
Period size: 186 Copynumber: 2.1 Consensus size: 184
20389893 CTCGATCCAG
*
20389903 TCTGATTTTAGACT-GGAAATGAACTCCATATGCTTGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAAA-GAACTCCATATGCTTGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
20389967 CAACCCACGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCGGGATGTGCAAGCCGAGGAT
65 CAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGAGGCGGGATGTCCAAGCCGAGGAT
* * *
20390032 CGGCTGGGTCCCCCTCTGCGTGCTACCGATCCTACATTCCGTAAACCTCAAT-TCGA
130 CGACTGGGTCCCCCTCTGCGTGCTACCGATCCTAC-TACCGCAAACCTCAATCT-GA
* *
20390088 TCTGATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTTGGAATGAACTCCGTATGCCTATGT
1 TCTGATCTTAGACTGGGAAAGAACTCCATATGCTT-GACTGGGAATGAACTCCGTATGCCTAAGT
* * *
20390153 GAACCCACGAAACGAGCGTGCGTGCGCTCAACCGGCCAGAGAGGCGGGATG-CCTAAGCCG-GGT
65 CAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGAGGCGGGATGTCC-AAGCCGAGG-
* * * * * *
20390216 ATCGACTGTGTCCCTCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGATCTGG
128 ATCGACTGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAAACCTCAATCTGA
*
20390273 TCTGATCTTAGACTGGGAATGAACTCC
1 TCTGATCTTAGACTGGGAAAGAACTCC
20390300 GCATGCCTAA
Statistics
Matches: 187, Mismatches: 20, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
185 70 0.37
186 117 0.63
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
TCTGATCTTAGACTGGGAAAGAACTCCATATGCTTGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGAGGCGGGATGTCCAAGCCGAGGATC
GACTGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAAACCTCAATCTGA
Found at i:20391015 original size:26 final size:26
Alignment explanation
Indices: 20390986--20391038 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20390976 CCGATCTGAT
*
20390986 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
20391012 CTTAGACTGGAAATGAACTCCTTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20391038 C
1 C
20391039 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:20391915 original size:26 final size:26
Alignment explanation
Indices: 20391877--20391929 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20391867 CTGGTCCGAT
* * *
20391877 CTTAGACTGGGAATGACCTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20391903 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20391929 C
1 C
20391930 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20392177 original size:185 final size:183
Alignment explanation
Indices: 20391865--20392272 Score: 484
Period size: 185 Copynumber: 2.2 Consensus size: 183
20391855 GCAACACTTG
* * * *
20391865 GTCTGGTCCGATCTTAGACTGGGAATGACCTTCGTATGCTTAGACTAGGAATGAACTCCGTATGC
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGAAATGAACTCCGTATGC
* * * *
20391930 CTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCATAGGGGCAGGATGCGCAAGTC
66 CTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * *
20391995 GGGGATCGGCCGGGTCCCCCACT-CTG-TGTTGCTGATCCTACTGCCGTAACCCTCA
131 GGAGATCGACC-GGTCCCCCTCTGCTGCTG-T-C-GATCCTACTACCGCAACCCTCA
* * *
20392050 GTCTGGTCTGATCTTAGACCGGGAATGAACTCCGTATGCTTATACT-GCAAATGAACTTCGTATG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG-AAATGAACTCCGTATG
* *
20392114 CCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCTC-GA-GGGCTGGGATGCGCAA
65 CCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGGC-CAGAGGGGC-AGGATGCGCAA
* * * * * *
20392177 GCCGGAGATTGATCGGTCCTCCTCTGCCTGCTGTCGATCTTGCTACTGCAACCCTCA
128 GCCGGAGATCGACCGGTCCCCCTCTG-CTGCTGTCGATCCTACTACCGCAACCCTCA
*
20392234 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
20392273 CTAAGCCAAC
Statistics
Matches: 191, Mismatches: 26, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
184 68 0.36
185 116 0.61
186 5 0.03
187 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (183 bp):
GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGAAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
GGAGATCGACCGGTCCCCCTCTGCTGCTGTCGATCCTACTACCGCAACCCTCA
Found at i:20392989 original size:26 final size:26
Alignment explanation
Indices: 20392951--20393003 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20392941 CTGGTCCGAT
* * *
20392951 CTTAGACTGGGAATGACCTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20392977 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20393003 C
1 C
20393004 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20393251 original size:185 final size:183
Alignment explanation
Indices: 20392939--20393346 Score: 500
Period size: 185 Copynumber: 2.2 Consensus size: 183
20392929 GCAACACTTG
* * * *
20392939 GTCTGGTCCGATCTTAGACTGGGAATGACCTTCGTATGCTTAGACTAGGAATGAACTCCGTATGC
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGAAATGAACTCCGTATGC
* * *
20393004 CTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCATAGGGGCAGGATGCGCAAGCC
66 CTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * *
20393069 GGGGATCGGCCGGGTCCCCCACT-CTG-TGTTGCTGATCCTACTGCCGTAACCCTCA
131 GGAGATCGACC-GGTCCCCCTCTGCTGCTG-T-C-GATCCTACTACCGCAACCCTCA
* * *
20393124 GTCTGGTCTGATCTTAGACCGGGAATGAACTCCGTATGCTTATACT-GCAAATGAACTTCGTATG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG-AAATGAACTCCGTATG
* * *
20393188 CCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCCGA-GGGCTGGGATGCGCAAG
65 CCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGGCCAGAGGGGC-AGGATGCGCAAG
* * * * * *
20393252 CCGGAGATTGATCGGTCCTCCTCTGCCTGCTGTCGATCTTGCTACTGCAACCCTCA
129 CCGGAGATCGACCGGTCCCCCTCTG-CTGCTGTCGATCCTACTACCGCAACCCTCA
*
20393308 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
20393347 CTAAGCCAAC
Statistics
Matches: 192, Mismatches: 26, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
184 68 0.35
185 118 0.61
186 4 0.02
187 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (183 bp):
GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGAAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
GGAGATCGACCGGTCCCCCTCTGCTGCTGTCGATCCTACTACCGCAACCCTCA
Found at i:20394969 original size:26 final size:26
Alignment explanation
Indices: 20394940--20394992 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20394930 CCAGTCCGAT
*
20394940 CTTAGATTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
20394966 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
20394992 C
1 C
20394993 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20395811 original size:897 final size:898
Alignment explanation
Indices: 20393116--20396743 Score: 4951
Period size: 902 Copynumber: 4.1 Consensus size: 898
20393106 CTACTGCCGT
* * * **
20393116 AACCCTCAGTCTGGTCTGATCTTAGACCGGGAATGAACTCCGTATGCTTATACTGCAAATGAACT
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
20393181 TCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCCGA-GGGCTGGGAT
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGGGGC-GGGAT
* * * * * * * *
20393245 GCGCAAGCCGGAGATTGATC-GGTCCTCCTCTGCCTGCTGTCGATCTTGCTACTGCAACCCTCAG
130 GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG
* *
20393309 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCAGGC
195 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A--A-GC
* *
20393374 GGGCAGGCGGGCGGGCACTGCGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
256 GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* ** *
20393439 GGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGTGCGCCAATGCCATTTTTATGGCTTGTAAAT
321 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
20393504 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTTTATTTTT
386 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * *
20393569 CACAATTTTGGAAACTTTTTACGGTTTGAGATTTTTTTAAATTTTTTCAAAAGGATTTTTGGCCC
451 CACTATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCC
* * * * * *
20393634 CCAACTTGGTAGACATGATCCTTTTATTTTTTTTGGGATGTACAAAAAAATTCAAG-AAAAAACT
516 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC-AGCTAAAAACT
* *
20393698 TGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
580 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* ** *
20393763 CTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGAGGA
645 CTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* *
20393828 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGTGCACACCCCC
710 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* ** * * *
20393893 CGGCCCCCTCGATCATTGGAACCTCAATGCCACTGGTCAGGTTCTCCGGTGATGCTCCAACGATG
775 C-GCCCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATG
* * * *
20393958 GTGCCCCGACGAAGAGAAATATGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGC
839 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
* * * *
20394018 AACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCGGTATGCTTAGACTGGGAATGAACT
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
20394083 CCGTACGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC-AGCTAGAGGGGCGGGAT
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGAT
* * * * * * *
20394147 GCACTAGCCGGGGATCGACTGGGTCCCCCTCAGTGTGCTGCGGATCCTGCTACCGCAACCCTCGG
130 GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG
* ** *
20394212 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCTGGC
195 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGC
* * *
20394277 AGGTGGTCGGGCGGGCACTACGTTGACCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGT
260 --G-GG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
20394342 GGTAGGTGGGTTTAGGCAGATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAT
321 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
20394407 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTT
386 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * ** *
20394472 CA-TGATTTTTGAAACTTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC
451 CACT-ATTTTTGAAAC-TTTTTACGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGC
* * *
20394536 CCCAAACTTGGTAGATGTGATCCCTGTATTTTTTTTGGCATGGACAAAAAAATTCAGCTAAAAAC
514 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
20394601 TCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGGT
579 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* **
20394666 ACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTGAGATG
644 ACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* *
20394731 ATGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
709 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * * ** *
20394796 CCG-GCCCCCTATCGCCGGAACCCCAATGCCATCGGTCATGTTCTACGACGACGCTCCGACGATG
774 CCGCCCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATG
* * * * *
20394860 GTGCCTCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTGGT
839 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
* ** * *
20394920 AACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACT
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
20394985 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTTAGCCGACCAGAGGGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGGGGCGGGATG
* * * * * * *
20395050 CGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGTTGCCAATCTTGCTGCTGGAACCCTC-GA
131 CGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG-
* **
20395114 TCCCGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATTAAACAAGCGGGC
195 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGC
* * *
20395179 GGGCGGGCGGGCACTACGTCGGCCTGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGATGGCA
260 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
20395243 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCAT
325 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
20395308 ACAATGGTCCCTTAAGCCTTCACGTGAAGTATCATGGCAAGACGACTCGTTTTCTATTTTTCACT
390 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT
*
20395373 ATTTTTGAAACTTTTTGCGGTTCTG-GATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAA
455 ATTTTTGAAACTTTTTACGGTT-TGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAA
* * *
20395437 ACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAA
519 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
20395502 GTATACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGG
584 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
20395567 TAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGCGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
649 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
20395632 TAGGGGGCCAATA-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAC
714 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-C
* * *
20395696 CCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACAATGGTGC
778 CCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
* * *
20395761 CCC-AGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCACAGTATGTGCTG-CTGC
843 CCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GC
* **
20395817 AACCCTCA---------G-TC-----C---G-AT---CT--G-AT-CTTAGACTTGGAAACAACT
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
20395856 TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGGGGCGGGATG
* ** * *
20395921 CGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAGT
131 CGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGT
* * ** *
20395986 CCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCTGGCG
196 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCG
* * * * * *
20396051 GGCGAGCGGGCACTACGCCGGCCAGAGAGACGGTATGCACAAGTCATGGATCGATAGGGTGGTAG
261 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* ** *
20396116 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCGAATGAAATTTTTATGGCATGTAAATTCATA
326 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
20396181 CAATGGTCCCTTAAGCCTTCTCGTGAAGTTGCATGGCAAGACAACTCGTTTTCTATTTTTCACGA
391 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTA
** * * *
20396246 TTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTCTTC-GAAAAGATTTTTGGCCCCAAA
456 TTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCAG-AAGGATTTTTGGCCCCAAA
* * *
20396310 CTTGGTAGACGTGATCCTTGTATTTTTATTGTCACGCACAAAAAAATTCAGCTAAAAACTCGAAG
520 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
20396375 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
585 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGT
20396440 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
650 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
** *
20396505 AGGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCGCACATCATGTACGCACA-CCCCCGCCC
715 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-CC
* * * * **
20396569 GGCCCCCTGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTTCGGTGATGGT
779 --CCCCC-GATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGT
* * *
20396634 GCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAACATGTGCTGTCGC
841 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
* *
20396692 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTAAGCTTAGA
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
20396744 TTGGAACCCT
Statistics
Matches: 2401, Mismatches: 271, Indels: 109
0.86 0.10 0.04
Matches are distributed among these distances:
871 226 0.09
872 398 0.17
873 40 0.02
874 5 0.00
875 110 0.05
876 2 0.00
878 2 0.00
879 1 0.00
884 1 0.00
885 2 0.00
887 2 0.00
888 1 0.00
890 1 0.00
893 1 0.00
894 2 0.00
895 49 0.02
896 237 0.10
897 260 0.11
898 38 0.02
899 8 0.00
900 3 0.00
901 7 0.00
902 442 0.18
903 286 0.12
904 277 0.12
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGGGGCGGGATG
CGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGT
CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCG
GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTA
TTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCC
CCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC
GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
Found at i:20396965 original size:26 final size:26
Alignment explanation
Indices: 20396929--20397007 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20396919 CTAGTCTGAT
20396929 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20396955 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20396981 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20397007 C
1 C
20397008 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20399124 original size:26 final size:26
Alignment explanation
Indices: 20399094--20399146 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20399084 GTTGACTTAT
* *
20399094 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20399120 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20399146 G
1 G
20399147 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20399803 original size:26 final size:26
Alignment explanation
Indices: 20399774--20399826 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20399764 GTTGACTTAG
*
20399774 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
*
20399800 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
20399826 G
1 G
20399827 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:20400099 original size:697 final size:685
Alignment explanation
Indices: 20398773--20400159 Score: 1869
Period size: 697 Copynumber: 2.0 Consensus size: 685
20398763 GAGACAATTT
*
20398773 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCAC
1 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
** * * *
20398838 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCATAGTGCCCGCCCACC
66 CTACCACCCTATCGATCCACGAATTACGCATCCCGTCTCTCTGGCCGACATA-TG-CCG-CCACC
* * * *
20398903 TGCCCGCCCGCTCGTTTTGTCGATTGGATTAGGGATACGGAGTTCATTCCCAGTCTAAGATCGGA
128 TGCCCGCCCGATCGTTTCGTCGATTGGATTAGGGATACGGAGTTCATTCACAGTCTAAGATCAGA
* * * * * * * *
20398968 CCGAATCGAGGGATGCGATAGCTGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCTCGGCT
193 CCGAACCAAAGGATGCGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGACCCTCGACT
* * * * * *
20399033 TGCGCATCCCGTCCCTCCGGTCGGTTGAGCACCTGTACGCTTGTTTCATGGGTTGACTTATGCAT
258 TGCCCATCCCGTCCCTCCAGCCGGCTGAGCACCTGTACGCTCGTTTCATGGGTTGACTTAGGCAT
* * * **
20399098 ATGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCGGACCGAG
323 ACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCGGACCGAG
* *
20399163 GGTTGCGGCAGCACATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC
388 GGTTGCGGCAGCACATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAACATCACC
* * * * ***
20399228 GGAGAACCTAACCGACGGTATTGGGGTTCCGGTGATTGAGGGGGCCGGGGGGTGTGCGTGCATGA
453 GGAGAACCTAACCGACAGCATTGGGGTTCCGATGATGGAGGGGGCCGGGGGGTGTGCACACATGA
*
20399293 TGCGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
518 TGCGCGATGGGTGCTAGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
20399358 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA-AGTGTTT
583 TCACACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACA-TGTTT
* *
20399422 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
647 AAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTG
*
20399461 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGTCTAAACCCAC
1 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
20399526 CTACCACCCTATCGATCCACGAATTACGCATCCTGTCTCTCTGGCCGACGT-TG-TG-C-CC-GC
66 CTACCACCCTATCGATCCACGAATTACGCATCCCGTCTCTCTGGCCGACATATGCCGCCACCTGC
* * * *
20399586 CCGCCCGATCGTTTCGTCGGTTGGCTTAGGGATATGGAGTTCATTCACAGTCTAAGATCAGACTG
131 CCGCCCGATCGTTTCGTCGATTGGATTAGGGATACGGAGTTCATTCACAGTCTAAGATCAGACCG
* * *
20399651 GACCAAAGGTTGCGGCAGCAGGATCGAG-AGCACGCAGAGGGGGACCCGACCGACCCTCGACTTG
196 AACCAAAGGATGCGACAGCAGGATCG-GTAGCACGCAGAGGGGGACCCGACCGACCCTCGACTTG
* * *
20399715 CCCATCCTG-CCCTTCTAGCCGGCTGACTGC-CC-GTACGCTCGTTTCGTGGGTTGACTTAGGCA
260 CCCATCCCGTCCC-TCCAGCCGGCTGA--GCACCTGTACGCTCGTTTCATGGGTTGACTTAGGCA
**
20399777 TACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATTGGACCGGACCGA
322 TACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCGGACCGA
* *
20399842 GGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGTGCAC
387 GGGTTGCGGCAGCACATGCT-GG-T---GC-----C----G---CATTTTTCTTCGTCGGGGCAC
* *
20399907 CATCGCCGGAACATCACCGGAGAACCTGACTGACAGCATTGGGGTTCCGATGATCGGA-GGGGCC
435 CATCGCCGGAACATCACCGGAGAACCTAACCGACAGCATTGGGGTTCCGATGAT-GGAGGGGGCC
* *
20399971 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCC
499 GGGGGGTGTGCACACATGATGCGCGATGGGTGCTAGTACTTGGCCCATATATTGGCCCCCTATCC
*
20400036 CTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCA
564 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCA
20400101 GTAGCCATTAACATGTTTAAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTG
629 GTAGCCATTAACATGTTTAAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTG
20400158 TA
1 TA
20400160 CACTTTGAGT
Statistics
Matches: 610, Mismatches: 66, Indels: 37
0.86 0.09 0.05
Matches are distributed among these distances:
679 3 0.00
680 230 0.38
681 7 0.01
682 4 0.01
684 1 0.00
685 2 0.00
686 2 0.00
688 107 0.18
690 1 0.00
694 1 0.00
697 249 0.41
698 3 0.00
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (685 bp):
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGAATTACGCATCCCGTCTCTCTGGCCGACATATGCCGCCACCTGC
CCGCCCGATCGTTTCGTCGATTGGATTAGGGATACGGAGTTCATTCACAGTCTAAGATCAGACCG
AACCAAAGGATGCGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGACCCTCGACTTGC
CCATCCCGTCCCTCCAGCCGGCTGAGCACCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACG
AAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCGGACCGAGGGT
TGCGGCAGCACATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAACATCACCGGA
GAACCTAACCGACAGCATTGGGGTTCCGATGATGGAGGGGGCCGGGGGGTGTGCACACATGATGC
GCGATGGGTGCTAGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACATGTTTAAAA
TGGGGACACTCTTTTCAAATGGTCACAAAATCTTG
Found at i:20400713 original size:712 final size:712
Alignment explanation
Indices: 20399800--20401280 Score: 2304
Period size: 712 Copynumber: 2.1 Consensus size: 712
20399790 CCCAGTCTAA
* * * * *
20399800 GCATACGGAGTTCACTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCAGACCGAGGGTTGCGGTAGCACATGCTAGG
* * *
20399865 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGTGCACCATCGCCGGAACATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCGTCGTCGGGGCACCATCGCCAGAACATCACCGGAGA
* *
20399930 ACCTGACTGACAGCATTGGGGTTCCGATGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTGC
130 ACCTGACCGACAGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTGC
20399995 GATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
20400060 TCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACA-TGTTTAAAAT
260 CCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA-AGTGTTTAAAAT
* *
20400124 GGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTGTTTG
324 GGGGACACTCTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTG
* * * * * * *
20400189 TGCATTCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCGAAACTCCTTCTGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGACCAAAACTCCTTCCGAAAAA
** * * *
20400254 ATTTT-AAAAATTTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTT
*
20400318 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAATTGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
20400382 TTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCA
584 TTGGCATACAAAAATATGAAGATGTGCC-AAACCCACCTACCACCCTAACGATCCACGGCTTGCA
* *
20400447 CGTCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* *
20400512 GCATACGGAGTTCATTCCCAGTCTAAGATCGCACAAGACCGA-GGTATGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGACCGAGGGT-TGCGGTAGCACATGCTAG
* * * * * **
20400576 GCTCGGGTATGTGCTGGTGCTACATTTTTCGTGGTCGGGGCACCATCGTCAGAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCACATTTTTCGTCGTCGGGGCACCATCGCCAGAACATCACCGGAG
* * * * *
20400641 AACCTGACCGATAGTATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACAGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTG
*
20400706 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
20400771 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAAT
* * *
20400836 GGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
324 GGGGACACTCTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTG
*
20400901 TGCATGCCAAAAAAAATACAAGGATCACGTCTCCCAAGCTTGGGACCAAAACTCCTTCCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGACCAAAACTCCTTCCGAAAAA
* ** * *
20400966 ATTTTAAAAAATCCCGAACAGCATAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTT
20401031 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
20401096 TTGGCATGCAAAAATATGAAGATGTGCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TTGGCATACAAAAATATGAAGATGTGCCAAACCCACCTACCACCCTAACGATCCACGGCTTGCAC
* **
20401161 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
*
20401225 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGTAGCA
20401281 GTTTTAACAG
Statistics
Matches: 697, Mismatches: 65, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
711 6 0.01
712 407 0.58
713 246 0.35
714 38 0.05
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGTAGCACATGCTAGGC
TCGGGCATGTGCTGGTGCCACATTTTTCGTCGTCGGGGCACCATCGCCAGAACATCACCGGAGAA
CCTGACCGACAGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGG
GGACACTCTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGACCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATACAAAAATATGAAGATGTGCCAAACCCACCTACCACCCTAACGATCCACGGCTTGCACAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
Found at i:20401387 original size:26 final size:26
Alignment explanation
Indices: 20401351--20401403 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20401341 GTTGACTTAG
*
20401351 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20401377 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20401403 G
1 G
20401404 ATTGGACCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20402404 original size:26 final size:26
Alignment explanation
Indices: 20402368--20402420 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20402358 GTTGACTTAG
20402368 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
* *
20402394 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
20402420 G
1 G
20402421 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:20405065 original size:26 final size:26
Alignment explanation
Indices: 20405035--20405087 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20405025 GTTGACTTAG
20405035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20405061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20405087 G
1 G
20405088 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20405543 original size:907 final size:900
Alignment explanation
Indices: 20402341--20408224 Score: 6990
Period size: 907 Copynumber: 6.6 Consensus size: 900
20402331 TACCCGAGAT
* * *
20402341 GCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTCTAAGCATAGGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * * * **
20402406 CATTCCCAGTCTAAGATCGGACTGGAGCAAGGGTTGCAGCAGCACATATTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
20402471 CTGGTGCCGTAGTTTTCTTCG-CTGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGA-CAAG
131 CTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA-
* * *** * ** *
20402534 CGGTATT-AGGGTTTCGA-CAATCGAGGGTTTCGGGGGGGTGTAAGCATATGATGTGCGATGGGT
194 CGGCATTGA-GG-TTCGAGCGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * **
20402597 GCTGGTAGTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAAATTCGAGAACTCACACCCCCTT
256 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * ** *
20402662 AAAGAGCATTTGAGATTTTAGAGGTTTGTTATCAGTAGCCATTAAAGTGTCTGAAATGGGGATAC
321 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
20402727 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAACTTTTTTGTGCATGCC
386 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
20402792 -GCAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAGTTTTAAA
451 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * * *
20402856 AAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
516 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
20402921 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
581 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* ** * * *
20402986 CAGAAATATGAAGATGCCCCTAAACCCACCTACCACCCTATCGATCCACGACATGCGCATCTCGT
646 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
** * * * * * * *
20403051 CTCTCTGGTAGGCGTAGT-GCCCGCCCTCCCACCTGTTGGTTTT-GTCGATTGGCTTAGGCATAC
711 CTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTTCATCGGTTGGCTTAGGCATAC
* * * ** * * * * * *
20403114 GGAGTTAATTCCCTGTCTAAGTTTGGA-TAGGACTGAGGGTTGCGGCAGCAAGATCGATAGCACA
776 GGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTAAGGGTTGTGGCAGCAGGATCGACAGCACG
* *
20403178 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCC
840 CAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCT-GCCCCTCTGGCCGGCTGAGCGCCC
*
20403240 GCACGCTCGTTTCATGGGTTGACTTAGGCAT-CTGGAGTTCATTCCCAGTCTAAG-AT-C-G-G-
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGCATACGGAGT
* *
20403299 --------A--C------CAGA-C----CGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGT
65 TCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * *
20403343 GCTGGTGCCGTATTTTTCTTCGTTGGGG---CA----C--A--ATCGTCGGAGAACCTAACCGGC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * * * *
20403397 GGCATTGGGGTT-AAGGCGATC-GGGGGGCGGGGGGGCGTGCCCACATGATGTGCGATGGGTGCT
195 GGCATTGAGGTTCGA-GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
20403460 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAA
259 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
20403525 GAACATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACGTT
324 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
20403590 TTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
389 TTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
20403654 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCAT-AAAAAAAATTTAAAAAA
453 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT--TAAA
** ** *
20403718 AAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
516 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * **
20403783 ACTTCACATGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
581 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
** *
20403848 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTAATCCACGGCTTGCGCATCCCAT
646 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
20403913 CTCTCT---CGGTG-ACGTAG--CGCCCGCCCGCCCGCTCG-TTTCGTCAGTTGGCTTAGGCATA
711 CTCTCTGGCCGGCGTA-GTCGCCCGCCCGCCCGCCCGCTCGTTTTCATCGGTTGGCTTAGGCATA
** * ** * *
20403971 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAA-GGTTGTACCAGCAGGATTGGCAGCAC
775 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTAAGGGTTGTGGCAGCAGGATCGACAGCAC
* * * *
20404035 GCAAAGGGTGACCCGGCCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTAAGCGCCC
839 GCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCT-GCCCCTCTGGCCGGCTGAGCGCCC
* * *
20404098 GCACGCTCGTTTCGTGGGTTGACTTTGGTATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
20404163 CATTCCCAGTCAAAGATC-GAACCAGATCGAGGGTTACAGCAGCACATGCTAGGCTCGAGCACGT
66 CATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * * *
20404227 GCTAGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGATCGAT
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* *
20404292 GGCATT-AGGGTTTCGA-CGATCGGGGGGGCTGAAGGGGGTTGTGCGCACATGATGTGTGATGGG
195 GGCATTGA-GG-TTCGAGCGATCGGGGGGGCCG--GGGGG-TGTGCGCACATGATGTGCGATGGG
20404355 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
255 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
20404420 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATGTCTGAAATGGGGACA
320 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
20404485 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTAAATTTTTTTGTGCATG
385 CTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
20404549 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGT-TTTCCGAAAAGATTTT
449 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCAAAAAAATTTT
* * * *
20404613 AAAAAATCCTGAACC-CTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTCGCTA
513 AAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
20404677 TGAAACTTCACATGAAGGTTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
577 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
20404742 CACATAGAAATATGAATACGTGCCTAAAGCAACCTACCACCCTATCGATCCACGGCTTGCGCATC
642 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
20404807 CCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGCTCATTTCATCGGTTGGC
707 CCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCGCCCGCCCGCTCG-T--TTTCATCGGTTGGC
* * * * *
20404872 TTTGGCATACAGAGTCCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGTGGCAGTAGGATC
766 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGTGGCAGCAGGATC
* * *
20404937 GGCAGCACGCAAAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTTGCCGGCTGA
831 GACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CTGCCCCTCTGGCCGGCTGA
20405002 GCGCCC
895 GCGCCC
* *
20405008 GCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
20405073 CATTCCCAGTCTAAGATCAGACCGGATCGAGCGTTGCGGCCA-CACATGCTGGGCTCGAGCATGT
66 CATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGG-CAGCACATGCTGGGCTCGGGCATGT
* * * *
20405137 GCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCAGAGCATCCCCGGAGAACCTGACCGAC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * * *
20405202 GACATTGAGGTTCGAGTGAACGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTG
195 GGCATTGAGGTTCGAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
20405267 GTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAAAACTCACACCCCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* **
20405332 AACATTTGAGATTTTACAGGTTTGCTGCCAGTAGTAATTAAAGTGTCTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * ***
20405397 TTCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTAGCTGAATTGTTTTGTGCGCACCAACA
390 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
20405462 AAAATACAAGGTTCACATCTACCAAGTTTGGGTCTAGAACTCCTTCCAAAAAAATTTTAAAAAAT
455 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* ** * *
20405527 CCCGAACAGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTT
520 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
20405592 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-TCAA
585 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT-AG
* * * * *
20405656 AAATATGAACATGCGCTTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTC
649 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
20405721 TCTGGCCGGCGTAGT---------GCCCGCCCGCTCG-TTTCATCGGTTGGCTTAGGCATATGGA
714 TCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTTCATCGGTTGGCTTAGGCATACGGA
* ** * * * * *
20405776 GTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTATGGCAGCAGGATTGATAGCACGTAG
779 GTTCATTCCCAGTCTAAGATCA-GACCAGACTAAGGGTTGTGGCAGCAGGATCGACAGCACGCAA
** ** * * *
20405840 AGGCAGACCCGGTCGATCCCCGGCTTGTGCATTCTGCCCTTCTGGCCGGTTGAGCGCCC
843 AGGGGGACCCGACCGATCCCCGGCTTGCGCA-TCTGCCCCTCTGGCCGGCTGAGCGCCC
* * *
20405899 GCACGGTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * * * *
20405964 CATTCCCAGTCCAAGATCAGACTGGATTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCTTGCG
66 CATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
** * * * *
20406029 CTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTC-GAGGCATCACTGGAGAACCTGACCGGC
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA-GCATCGCCGGAGAACCTGACCGAC
* * *
20406093 GGCATTTG-GGTTCCAGCGATCGAGGGGGCCGGGCGAGGTGTGTGCACATGATGTGCGATGGGTG
195 GGCA-TTGAGGTTCGAGCGATCGGGGGGGCCGGG-G-GGTGTGCGCACATGATGTGCGATGGGTG
* *
20406157 CTGGTACTTGACCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTA
257 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
20406221 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACT
322 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
20406286 TTTTTCAAAAGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCA
387 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** *
20406351 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGACCCAAAACTCCATCCGAAAAAAA-TTTAAA
452 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAA
* *
20406415 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
516 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * **
20406480 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCACAAAAATGGCATTTGCATG
581 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* *
20406545 TAGAAATAAGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGCATCCCGT
646 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * **
20406610 TTCTCTGGCTGATGTAGT-GCCCGCCCGCCCGCCCACCTGCTCG-TTTCATCGGTTGGCTTAGGC
711 CTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCG--C-CC-GCTCGTTTTCATCGGTTGGCTTAGGC
* ** ** * ** * * **
20406673 ATACGGAGTTCATTCCCAATCTAACCTCAGACTGGACTGAGGGTTGCAGCAGTAGAATCGGTAGC
772 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGTGGCAGCAGGATCGACAGC
* *
20406738 ACGCAGAA-GGGGACCCGATCGATCCCCGGTTTGCGCA----------T---C--C----CGCCC
837 ACGCA-AAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTGCCCCTCTGGCCGGCTGAGCGCCC
*
20406783 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
20406848 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTG
66 CATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* ** *
20406913 TTGGTGCCGCATTTTTCTTCGTTAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGATG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACG
* **
20406978 GCATTGGGGTTCCG-GCGATCGGAAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
196 GCATTGAGGTT-CGAGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * *
20407042 GGTTCTTGGCCCTTATATTGGCCCACTATCCCTCATCAAATCTCGAAAACTCACACCCCCCTAAA
259 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
20407107 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
324 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
20407172 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAC
389 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * * * *
20407237 AAACATACAAGGATCATGTCCACCAAGCTT-GGGCCAAAACACCTTCCGAAAAATTTTTAAAAAA
454 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * *
20407301 TCCCGAACTGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
519 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
20407366 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
584 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
20407431 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
649 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * ** * *
20407496 TCTGGCCGGTGTAGT-GCCCGCCTGACCGCCCGCTCG-TTTCGTCTATCGACTTAGGCATACGGA
714 TCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTTCATCGGTTGGCTTAGGCATACGGA
* * * ** * * * *
20407559 GTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTCATGGTAGCAGGATCGACAACATGCAGA
779 GTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGTGGCAGCAGGATCGACAGCACGCAAA
** * * ** *** ** * * **
20407624 GGGGGACTTGGCCGATCCTCGGGAT--GCATTCT-CATTTCGTGGGTTGACTTAG-GCAT
844 GGGGGACCCGACCGATCCCCGGCTTGCGCA-TCTGCCCCTC-T-GGCCGGCTGAGCGCCC
* * * * * * * *
20407680 ACAGAGTTCATTCCCT--G-T--C-TAAGCATATGGAGTTCATTCCCAGTCTAAG-ATGGGATCA
1 GCA-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT---A-C-
** * ** ** * * * *
20407738 GATCGAGGGTTGCGA-TCGGACTGGACACCCTCGGTCCAGACCGAGGGTTGCGTCAGCACATGCT
60 G---GA--GTT-C-ATTCCCAGTCTA-A-GATCAGACCAGATCGAGGGTTGCGGCAGCACATGCT
* * *
20407802 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAG
116 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * * *
20407867 AGAACCTGACAGGCGACATTG-GTGTTCTG-GCGATC-GGGGGGCCGGGGGCTGTGCGCACATGA
181 AGAACCTGACCGACGGCATTGAG-GTTC-GAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
20407929 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
244 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
20407994 TCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
309 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
20408059 GAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
374 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
*
20408124 TTTGAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
439 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
** *
20408189 AAAAATTTTAAAAAATCATGAACCGTAAAAAGTTTC
504 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
20408225 GAACCATAAA
Statistics
Matches: 4313, Mismatches: 516, Indels: 308
0.84 0.10 0.06
Matches are distributed among these distances:
857 3 0.00
858 182 0.04
859 11 0.00
860 221 0.05
861 48 0.01
862 215 0.05
863 1 0.00
864 1 0.00
866 1 0.00
870 2 0.00
871 1 0.00
873 57 0.01
877 3 0.00
878 5 0.00
879 91 0.02
880 3 0.00
881 1 0.00
882 5 0.00
883 309 0.07
884 410 0.10
885 6 0.00
886 1 0.00
887 2 0.00
888 1 0.00
890 6 0.00
891 318 0.07
892 395 0.09
893 89 0.02
894 2 0.00
895 45 0.01
896 13 0.00
897 5 0.00
898 198 0.05
899 305 0.07
900 14 0.00
901 8 0.00
902 253 0.06
903 59 0.01
904 220 0.05
905 2 0.00
906 21 0.00
907 450 0.10
908 6 0.00
909 8 0.00
910 310 0.07
911 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACG
GCATTGAGGTTCGAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTTCATCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGTGGCAGCAGGATCGACAGCACGCAAAGG
GGGACCCGACCGATCCCCGGCTTGCGCATCTGCCCCTCTGGCCGGCTGAGCGCCC
Found at i:20406846 original size:26 final size:26
Alignment explanation
Indices: 20406810--20406862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20406800 GTTGACTTAG
*
20406810 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20406836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20406862 G
1 G
20406863 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20407190 original size:884 final size:878
Alignment explanation
Indices: 20402341--20408224 Score: 6620
Period size: 884 Copynumber: 6.6 Consensus size: 878
20402331 TACCCGAGAT
* * *
20402341 GCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTCTAAGCATAGGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * * * **
20402406 CATTCCCAGTCTAAGATCGGACTGGAGCAAGGGTTGCAGCAGCACATATTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
20402471 CTGGTGCCGTAGTTTTCTTCG-CTGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGA-CAAG
131 CTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA-
* * * * * *** ** *
20402534 CGGTATTAGGGTTTCGACAATCGAGGGTTTCGGGGGGGTGTAAGCATATGATGTGCGATGGGTGC
194 CGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * **
20402599 TGGTAGTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAAATTCGAGAACTCACACCCCCTTAA
258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * ** *
20402664 AGAGCATTTGAGATTTTAGAGGTTTGTTATCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
20402729 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAACTTTTTTGTGCATGCC-G
388 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
20402793 CAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAGTTTTAAAAA
453 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-ATTTAAAAA
* * * * *
20402858 ATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
517 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
20402923 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACA
582 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATA
** * * *
20402988 GAAATATGAAGATGCCCCTAAACCCACCTACCACCCTATCGATCCACGACATGCGCATCTCGTCT
647 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * * * * ** *
20403053 CTCTGGTAGGCGTAGTGCCCGCCCTCCCACCTGTTGGTTTTGTCGATTGGCTTAGGCATACGGAG
712 CTCTGGCCGGCGTAGTG--CGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
* * * ** ** ** * * * *
20403118 TTAATTCCCTGTCTAAGTTTGGATAGGACTGAGGGTTGCGGCAGCAAGATCGATAGCACACAGAG
775 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTAGCAGCAGGATCGACAGCACGCAGAA
*
20403183 GGGGACCCGACCGATCCCCGACTTGCGCAT-CTCGC-CCC
840 GGGGACCCGACCGATCCCCGGCTTGCGCATGC-CGCGCCC
* ** * * * * ** * * ***** * *
20403221 TCTGGC-CG--GC-TGAG-CGCCCGCACGC-T-C-G-TTTCATGGGTTGACTTAGGCAT-CTGGA
1 GCACGCTCGTTTCGTGGGTTG-ACTTAGGCATACGGAGTTCATTCCCAGTC-TAAGCATAC-GGA
* * *
20403276 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCAT
63 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * *
20403341 GTGCTGGTGCCGTATTTTTCTTCGTTGGGG---CA----C--A--ATCGTCGGAGAACCTAACCG
128 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
* ** * *
20403395 GCGGCATTGGGGTTAAGGCGATCGGGGGG-CGGGGGGGCGTGCCCACATGATGTGCGATGGGTGC
193 ACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
20403459 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGA
258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
20403524 AGAACATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACGT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
20403589 TTTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTGAATTTTTTTGTGCATGCCA
388 TTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
20403653 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCAT-AAAAAAAATTTAAAAA
452 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT---AA
* ** *
20403717 AAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
514 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
20403782 AACTTCACATGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
579 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* ** *
20403847 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTAATCCACGGCTTGCGCATCCCA
644 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
20403912 TCTCTCTCGG-TGACGTA--GCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
709 TCTCTCT-GGCCGGCGTAGTGCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
** * * * * *
20403974 AGTTCATTCCCAGTCTAAGATTGGACCAGA-TCGAAGGTTGTACCAGCAGGATTGGCAGCACGCA
773 AGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTAGCAGCAGGATCGACAGCACGCA
* *
20404038 -AAGGGTGACCCGGCCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTAAGCGCCC
837 GAAGGG-GACCCGACCGATCCCCGGCTTGCGCA-----------T-G-C--C---GCGCCC
* * *
20404098 GCACGCTCGTTTCGTGGGTTGACTTTGGTATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * * *
20404163 CATTCCCAGTCAAAGATC-GAACCAGATCGAGGGTTACAGCAGCACATGCTAGGCTCGAGCACGT
66 CATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * * *
20404227 GCTAGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGATCGAT
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * * * * *
20404292 GGCATTAGGGTTTCGACGATCGGGGGGGCTGAAGGGGGTTGTGCGCACATGATGTGTGATGGGTG
195 GGCATTGGGGTTCCGGCGATC-GGGGGGCCG--GGGGGGTGTGCGCACATGATGTGCGATGGGTG
20404357 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
257 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
20404422 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATGTCTGAAATGGGGACACT
322 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
20404487 TTTTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTAAATTTTTTTGTGCATGCC
387 TTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
20404551 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGT-TTTCCGAAAAGATTTTAA
451 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCC-AAAAAAATTTAA
* * * * *
20404615 AAAATCCTGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTCGCTATGA
514 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * *
20404680 AACTTCACATGAAGGTTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
579 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
20404745 ATAGAAATATGAATACGTGCCTAAAGCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
644 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
20404810 TCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGCTCATTTCATCGGTTGGCTTT
709 TCTCTCTGGCCGGCGTAGT----G--CGCCCGCCCGCCCGCTCG----TTTCATCGGTTGGCTTA
* * * * * * * *
20404875 GGCATACAGAGTCCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGTGGCAGTAGGATCGGC
764 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTAGCAGCAGGATCGAC
*
20404940 AGCACGCA-AAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTTGCCGGCTGAGC
829 AGCACGCAGAA-GGGGACCCGACCGATCCCCGGCTTGCGCA------------TG-C--C---GC
20405004 GCCC
875 GCCC
* *
20405008 GCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
20405073 CATTCCCAGTCTAAGATCAGACCGGATCGAGCGTTGCGGCCA-CACATGCTGGGCTCGAGCATGT
66 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG-CAGCACATGCTGGGCTCGGGCATGT
* * * *
20405137 GCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCAGAGCATCCCCGGAGAACCTGACCGAC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * * * *
20405202 GACATTGAGGTT-CGAGTGAACGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGCTGC
195 GGCATTGGGGTTCCG-GCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
20405265 TGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAAAACTCACACCCCCTTAA
258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* **
20405330 AGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGTAATTAAAGTGTCTGAAATGGGGACACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * ***
20405395 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTAGCTGAATTGTTTTGTGCGCACCAA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
20405460 CAAAAATACAAGGTTCACATCTACCAAGTTTGGGTCTAGAACTCCTTCCAAAAAAATTTTAAAAA
453 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA-TTTAAAAA
* * ** * *
20405525 ATCCCGAACAGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTTGTCTTGCCATGAAAC
517 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
20405590 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCA
582 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-T-A
* * * * *
20405655 -A-AAATATGAACATGCGCTTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGT
645 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
*
20405718 CTCTCTGGCCGGCGTAGT------GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAG
710 CTCTCTGGCCGGCGTAGTGCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
* * * * * *
20405777 TTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTATGGCAGCAGGATTGATAGCACGTAG-
775 TTCATTCCCAGTCTAAGATCA-GACCGGACTGAGGGTTGTAGCAGCAGGATCGACAGCACGCAGA
* ** *
20405840 AGGCAGACCCGGTCGATCCCCGGCTTGTGCATTCTGCCCTTCTGGCCGGTTGAGCGCCC
839 AGG-GGACCCGACCGATCCCCGGC-T-TG----C-G--C--AT-GCC------GCGCCC
* * *
20405899 GCACGGTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** ** * * *
20405964 CATTCCCAGTCCAAGATCAGACTGGATTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCTTGCG
66 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
** * * * *
20406029 CTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTC-GAGGCATCACTGGAGAACCTGACCGGC
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA-GCATCGCCGGAGAACCTGACCGAC
* * * *
20406093 GGCATTTGGGTTCCAGCGATCGAGGGGGCCGGGCGAGGTGTGTGCACATGATGTGCGATGGGTGC
195 GGCATTGGGGTTCCGGCGATCG-GGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
20406158 TGGTACTTGACCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAA
258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
20406222 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
20406287 TTTTCAAAAGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** *
20406352 CAAAAATACAAGGATCATGTCTACCAAGTTTGGACCCAAAACTCCATCCGAAAAAAATTTAAAAA
453 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTAAAAA
*
20406417 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
517 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
20406482 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCACAAAAATGGCATTTGCATGTA
582 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATA
* * *
20406547 GAAATAAGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGCATCCCGTTT
647 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* **
20406612 CTCTGGCTGATGTAGTGCCCGCCCGCCCGCCCACCTGCTCGTTTCATCGGTTGGCTTAGGCATAC
712 CTCTGGCCGGCGTAGTG--CGCCCGCCCG--C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATAC
* ** * * * * **
20406677 GGAGTTCATTCCCAATCTAACCTCAGACTGGACTGAGGGTTGCAGCAGTAGAATCGGTAGCACGC
771 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTAGCAGCAGGATCGACAGCACGC
* *
20406742 AGAAGGGGACCCGATCGATCCCCGGTTTGCGCAT-CC-CGCCC
836 AGAAGGGGACCCGACCGATCCCCGGCTTGCGCATGCCGCGCCC
*
20406783 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
*
20406848 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTG
66 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* ** *
20406913 TTGGTGCCGCATTTTTCTTCGTTAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGATG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACG
*
20406978 GCATTGGGGTTCCGGCGATCGGAAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
196 GCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * *
20407043 GTTCTTGGCCCTTATATTGGCCCACTATCCCTCATCAAATCTCGAAAACTCACACCCCCCTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
20407108 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
20407173 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
390 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * * **
20407238 AACATACAAGGATCATGTCCACCAAGCTT-GGGCCAAAACACCTTCCGAAAAATTTTTAAAAAAT
455 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTAAAAAAT
* * * *
20407302 CCCGAACTGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
519 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
20407367 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGA
584 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGA
20407432 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
649 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * ** * *
20407497 CTGGCCGGTGTAGTGCCCGCCTGACCGCCCGCTCGTTTCGTCTATCGACTTAGGCATACGGAGTT
714 CTGGCCGGCGTAGTG--CGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* ** ** * * * * *
20407562 CATTCCCAGTCTAAGATCAAACCGGACCAAGGGTCATGGTAGCAGGATCGACAACATGCAGAGGG
777 CATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTAGCAGCAGGATCGACAGCACGCAGAAGG
** * *
20407627 GGACTTGGCCGATCCTC-G---G-G-AT---------
842 GGACCCGACCGATCCCCGGCTTGCGCATGCCGCGCCC
** * * * *
20407649 GCATTCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
20407714 CATTCCCAGTCTAAGATGGGATCAGATCGAGGGTTGCGATCGGACTGGACACCCTCGGTCCAGAC
66 CATTCCCAGTC----------T---A---A-------GATC--A---G--A--------CCAGAC
* *
20407779 CGAGGGTTGCGTCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
93 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * *
20407844 CACCATCGTCGGAGCATCGCCAGAGAACCTGACAGGCGACATTGGTGTTCTGGCGATCGGGGGGC
158 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGC
*
20407909 C-GGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
223 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
20407973 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGC
288 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
20408038 CAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
353 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
20408103 TCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
418 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
**
20408168 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCATGAACCGTAAAAAGTTTC
483 TGGGGCCAAAACTCCTTCCAAAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTC
20408225 GAACCATAAA
Statistics
Matches: 4287, Mismatches: 548, Indels: 315
0.83 0.11 0.06
Matches are distributed among these distances:
857 5 0.00
858 106 0.02
859 3 0.00
860 213 0.05
861 48 0.01
862 224 0.05
863 3 0.00
864 1 0.00
866 70 0.02
869 1 0.00
870 2 0.00
872 7 0.00
873 96 0.02
874 2 0.00
875 3 0.00
876 10 0.00
877 7 0.00
878 3 0.00
879 91 0.02
880 5 0.00
881 6 0.00
882 3 0.00
883 316 0.07
884 451 0.11
885 10 0.00
887 2 0.00
888 1 0.00
889 4 0.00
890 10 0.00
891 296 0.07
892 364 0.08
893 90 0.02
894 1 0.00
895 47 0.01
896 7 0.00
897 5 0.00
898 190 0.04
899 259 0.06
900 7 0.00
901 8 0.00
902 253 0.06
903 49 0.01
904 215 0.05
905 4 0.00
906 25 0.01
907 447 0.10
908 1 0.00
909 3 0.00
910 300 0.07
911 13 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACG
GCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAATCC
CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAGTGCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGACTGAGGGTTGTAGCAGCAGGATCGACAGCACGCAGAAGGGGAC
CCGACCGATCCCCGGCTTGCGCATGCCGCGCCC
Found at i:20407705 original size:26 final size:26
Alignment explanation
Indices: 20407676--20407728 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20407666 GTTGACTTAG
*
20407676 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
20407702 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20407728 G
1 G
20407729 ATGGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20408219 original size:17 final size:17
Alignment explanation
Indices: 20408197--20408263 Score: 82
Period size: 17 Copynumber: 3.9 Consensus size: 17
20408187 AAAAAAATTT
*
20408197 TAAAAAATCATGAACCG
1 TAAAAAATCTTGAACCG
* *
20408214 TAAAAAGT-TTCGAACCA
1 TAAAAAATCTT-GAACCG
*
20408231 TAAAAAATCCTGAACCG
1 TAAAAAATCTTGAACCG
20408248 TAAAAAATCTTGAACC
1 TAAAAAATCTTGAACC
20408264 CACCTACCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
16 1 0.02
17 39 0.95
18 1 0.02
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.21
Consensus pattern (17 bp):
TAAAAAATCTTGAACCG
Found at i:20408263 original size:34 final size:34
Alignment explanation
Indices: 20408197--20408263 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
20408187 AAAAAAATTT
*
20408197 TAAAAAATCATGAACCGTAAAAAGTTTCGAACCA
1 TAAAAAATCATGAACCGTAAAAAATTTCGAACCA
*
20408231 TAAAAAATCCTGAACCGTAAAAAATCTT-GAACC
1 TAAAAAATCATGAACCGTAAAAAAT-TTCGAACC
20408264 CACCTACCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 28 0.93
35 2 0.07
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.21
Consensus pattern (34 bp):
TAAAAAATCATGAACCGTAAAAAATTTCGAACCA
Found at i:20409009 original size:810 final size:810
Alignment explanation
Indices: 20407773--20409843 Score: 3772
Period size: 810 Copynumber: 2.6 Consensus size: 810
20407763 CACCCTCGGT
* * * *
20407773 CCAGACCGAGGGTTGCGTCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
1 CCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTATTCTTCA
* * * * ** * * * *
20407838 TCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACAGGCGACATTGGTGTTCTGGCGATCG
66 CCGGGGCACTATCGTCGGAGCATCGTCGGAGAACCTGATTGGTGGCATTGGGGTTCTGACGATCG
* * *
20407903 GGGGGCC-GGG-GGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
131 GGGGGCCGGGGTGGGTTTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-
*
20407966 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGT
195 CCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGT
20408031 TTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
260 TTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
20408096 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTA
325 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTA
20408161 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCATGAACCGTAAAAAGTTTCG
390 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCATGAACCGTAAAAAGTTTCG
20408226 AACCATAAAAAATCCTGAACCGTAAAAAATCTTGAACCCACCTACCACCCTATCGATCAACGGCT
455 AACCATAAAAAATCCTGAACCGTAAAAAATCTTGAACCCACCTACCACCCTATCGATCAACGGCT
20408291 TATGCATCCCGTCTCTCTGGTCGGCATAGTGGCCGCCCACCCGCTCGCCCACTCGTTCCGTCAGT
520 TATGCATCCCGTCTCTCTGGTCGGCATAGTGGCCGCCCACCCGCTCGCCCACTCGTTCCGTCAGT
20408356 TGGTTTAGGCATACGGAGTTCATCCCAAGTCTATGATCGGACCAGACTGAGGGTTGCGACAACAG
585 TGGTTTAGGCATACGGAGTTCATCCCAAGTCTATGATCGGACCAGACTGAGGGTTGCGACAACAG
20408421 GATCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTACGCATCCCACCCCTTTGGTCGG
650 GATCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTACGCATCCCACCCCTTTGGTCGG
20408486 CTAAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCCATCTAAGC
715 CTAAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCCATCTAAGC
20408551 ATACGACGTTCATTCCTAGTCTAAGATCAGA
780 ATACGACGTTCATTCCTAGTCTAAGATCAGA
20408582 CCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTATTCTTCA
1 CCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTATTCTTCA
20408647 CCGGGGCACTATCGTCGGAGCATCGTCGGAGAACCTGATTGGTGGCATTGGGGTTCTGACGATCG
66 CCGGGGCACTATCGTCGGAGCATCGTCGGAGAACCTGATTGGTGGCATTGGGGTTCTGACGATCG
20408712 GGGGGCCGGGGTGGGTTTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
131 GGGGGCCGGGGTGGGTTTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
20408777 CCCTATCCCTAATCAAACCTTGAGAACTCACACCCCCTTAAATAGCATTTGAGAGTTTACAGGTT
196 CCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTT
20408842 TGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
261 TGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
20408907 TACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTAC
326 TACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTAC
20408972 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCATGAACCGTAAAAAGTTTCGA
391 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCATGAACCGTAAAAAGTTTCGA
20409037 ACCATAAAAAATCCTGAACCGTAAAAAATCTTGAACCCACCTACCACCCTATCGATCAACGGCTT
456 ACCATAAAAAATCCTGAACCGTAAAAAATCTTGAACCCACCTACCACCCTATCGATCAACGGCTT
20409102 ATGCATCCCGTCTCTCTGGTCGGCATAGTGGCCGCCCACCCGCTCGCCCACTCGTTCCGTCAGTT
521 ATGCATCCCGTCTCTCTGGTCGGCATAGTGGCCGCCCACCCGCTCGCCCACTCGTTCCGTCAGTT
20409167 GGTTTAGGCATACGGAGTTCATCCCAAGTCTATGATCGGACCAGACTGAGGGTTGCGACAACAGG
586 GGTTTAGGCATACGGAGTTCATCCCAAGTCTATGATCGGACCAGACTGAGGGTTGCGACAACAGG
20409232 ATCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTACGCATCCCACCCCTTTGGTCGGC
651 ATCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTACGCATCCCACCCCTTTGGTCGGC
20409297 TAAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCCATCTAAGCA
716 TAAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCCATCTAAGCA
20409362 TACGACGTTCATTCCTAGTCTAAGATCAGA
781 TACGACGTTCATTCCTAGTCTAAGATCAGA
* *
20409392 CCAGACCGAGGGTTACGACAGCACATGCTAGGCTC-AGGCATGTGCTGGTGCCACATTATTCTTC
1 CCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCACATTATTCTTC
20409456 ACCGGGGCACTATCGTCGGAGCATCGTCGGAGAACCTGATTGGTGGCATTGGGGTTCTGACGATC
65 ACCGGGGCACTATCGTCGGAGCATCGTCGGAGAACCTGATTGGTGGCATTGGGGTTCTGACGATC
*
20409521 GGGGGGCCGGGGTGGGTTTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAG
130 GGGGGGCCGGGGTGGGTTTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
20409586 CCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
195 CCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGT
* * * **
20409651 TTGCTGCTAGGAGCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
260 TTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
20409716 GTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA
325 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
20409781 CCAACTTTGGGGCAAAAACTCCTTCCAAAAAAATTTTAAAAAATTC-TGAACCGTACAAAGTTT
390 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA-TCATGAACCGTAAAAAGTTT
20409844 TGAAAATCGT
Statistics
Matches: 1221, Mismatches: 37, Indels: 7
0.97 0.03 0.01
Matches are distributed among these distances:
809 124 0.10
810 1046 0.86
811 51 0.04
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (810 bp):
CCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTATTCTTCA
CCGGGGCACTATCGTCGGAGCATCGTCGGAGAACCTGATTGGTGGCATTGGGGTTCTGACGATCG
GGGGGCCGGGGTGGGTTTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCATGAACCGTAAAAAGTTTCGA
ACCATAAAAAATCCTGAACCGTAAAAAATCTTGAACCCACCTACCACCCTATCGATCAACGGCTT
ATGCATCCCGTCTCTCTGGTCGGCATAGTGGCCGCCCACCCGCTCGCCCACTCGTTCCGTCAGTT
GGTTTAGGCATACGGAGTTCATCCCAAGTCTATGATCGGACCAGACTGAGGGTTGCGACAACAGG
ATCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTACGCATCCCACCCCTTTGGTCGGC
TAAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCCATCTAAGCA
TACGACGTTCATTCCTAGTCTAAGATCAGA
Found at i:20409029 original size:17 final size:17
Alignment explanation
Indices: 20409007--20409073 Score: 82
Period size: 17 Copynumber: 3.9 Consensus size: 17
20408997 AAAAAAATTT
*
20409007 TAAAAAATCATGAACCG
1 TAAAAAATCTTGAACCG
* *
20409024 TAAAAAGT-TTCGAACCA
1 TAAAAAATCTT-GAACCG
*
20409041 TAAAAAATCCTGAACCG
1 TAAAAAATCTTGAACCG
20409058 TAAAAAATCTTGAACC
1 TAAAAAATCTTGAACC
20409074 CACCTACCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
16 1 0.02
17 39 0.95
18 1 0.02
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.21
Consensus pattern (17 bp):
TAAAAAATCTTGAACCG
Found at i:20409073 original size:34 final size:34
Alignment explanation
Indices: 20409007--20409073 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
20408997 AAAAAAATTT
*
20409007 TAAAAAATCATGAACCGTAAAAAGTTTCGAACCA
1 TAAAAAATCATGAACCGTAAAAAATTTCGAACCA
*
20409041 TAAAAAATCCTGAACCGTAAAAAATCTT-GAACC
1 TAAAAAATCATGAACCGTAAAAAAT-TTCGAACC
20409074 CACCTACCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 28 0.93
35 2 0.07
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.21
Consensus pattern (34 bp):
TAAAAAATCATGAACCGTAAAAAATTTCGAACCA
Found at i:20411336 original size:112 final size:112
Alignment explanation
Indices: 20411192--20411396 Score: 295
Period size: 112 Copynumber: 1.8 Consensus size: 112
20411182 GACCAGACCG
* *
20411192 AGGGTTGCGGCAGCACATCTTGGGCACGGGCATGTGTTAGTGCCGCATTTTTCTTCGTCAGGGCA
1 AGGGTTGCGGCAGCACATCTTGGGCACGGGCATGTGCTAGTGCCACATTTTTCTTCGTCAGGGCA
* * *
20411257 CGATCGTCGGCGCATCACCGGAGAACCTTACCGGTGGCATTGGCATT
66 CCATCGTCGGAGCATCACCAGAGAACCTTACCGGTGGCATTGGCATT
* * *
20411304 AGGGTTGCGGCAGCACATAC-TGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCAGGGC
1 AGGGTTGCGGCAGCACAT-CTTGGGCACGGGCATGTGCTAGTGCCACATTTTTCTTCGTCAGGGC
* * *
20411368 ACCATTGTTGGAGCATCGCCAGAGAACCT
65 ACCATCGTCGGAGCATCACCAGAGAACCT
20411397 GACAGGCAGC
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
112 80 0.99
113 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (112 bp):
AGGGTTGCGGCAGCACATCTTGGGCACGGGCATGTGCTAGTGCCACATTTTTCTTCGTCAGGGCA
CCATCGTCGGAGCATCACCAGAGAACCTTACCGGTGGCATTGGCATT
Found at i:20412246 original size:159 final size:158
Alignment explanation
Indices: 20411971--20412319 Score: 504
Period size: 159 Copynumber: 2.2 Consensus size: 158
20411961 GACAGGCTGG
* * *
20411971 CTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGCTGAGTGTTTCAGCAGCAGGATC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGCTGAGGGTTGCAGCAGCAGGATC
*
20412036 AACAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTTCGCCTCCCGCCCCTCTGGCC-GACTG
66 AACAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTTCGCATCCCGCCCCTCTGGCCAG-CTG
20412100 AGCGCCCGCACGCTCATTTCATGGGTTGA
130 AGCGCCCGCACGCTCATTTCATGGGTTGA
* ** *
20412129 CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATTGGATCGGGCTGAGGGTTGCAGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGCTGAGGGTTGCAGCAGCAGGAT
** * * * *
20412194 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGACTTGT-GCATGCTGCCCCTCTGGCCAGCT
65 CAACAGCACGCAGAAGGGGACCCGACCGATCCCCGACTT-TCGCATCCCGCCCCTCTGGCCAGCT
*
20412258 GAGCGCCCGCACGTTCATTTCATGGGTTGA
129 GAGCGCCCGCACGCTCATTTCATGGGTTGA
* *
20412288 CTTAGGCGTAAGGAGTTCATTCCCAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20412320 CATACAGAGT
Statistics
Matches: 170, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
158 34 0.20
159 134 0.79
160 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (158 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGCTGAGGGTTGCAGCAGCAGGATC
AACAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTTCGCATCCCGCCCCTCTGGCCAGCTGA
GCGCCCGCACGCTCATTTCATGGGTTGA
Found at i:20413212 original size:26 final size:26
Alignment explanation
Indices: 20413176--20413254 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20413166 GTTGACTTAG
*
20413176 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
*
20413202 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
* *
20413228 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
20413254 G
1 G
20413255 ATCAGATCGA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTTTAA
Found at i:20415016 original size:26 final size:26
Alignment explanation
Indices: 20414980--20415058 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
20414970 GTTGACTTAG
*
20414980 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
*
20415006 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
*
20415032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
20415058 G
1 G
20415059 ATCAGACTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTTTAA
Found at i:20416504 original size:717 final size:718
Alignment explanation
Indices: 20415150--20416527 Score: 2141
Period size: 717 Copynumber: 1.9 Consensus size: 718
20415140 ATTGCCGGAG
* * * * *
20415150 CATCGTCGGAGCATCGTCGAATAACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
1 CATCGTCAGAGCATCGACGAAGAACCTGACCAACGGCATTAGGGTTCCGACGATCGAGGGGGCCG
* *
20415215 GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGAACTTGGCCCTTATATTGGCTCCCTATCCA
66 GGGGGTGTGCGCACATGATGCGCAATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCA
** * * *
20415280 TTGTCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
131 TCATCAAACCTCAAGAACTCACACACCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* **
20415345 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
196 TAGCCATTAAAGTGCCTGAAATGGGGACACTTTTGCCAAATGGTCACAAAATCTTGTACACTTCG
* *
20415410 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGG
261 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATCACGTCGACCAAGTTTGG
* ** * * *
20415475 GGCAAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAGCCGTAAAATGTTTCGAAAATCATGA
326 GGCAAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGA
20415540 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
391 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
20415605 TTTACAAGCCATAAAAATCGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
456 TTTACAAGCCATAAAAATCGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * ** * * * *
20415670 TCCTATCGATCCATGGCTTGCGTGTCCCATCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCTCCCG
521 CCCTATCGATCCACGGCTTACGCATCCCATCTCTATGGCCGGCGCAGTGCCCGCCCGCCCGCCCG
* * **
20415735 CCCACTTGTTTCGTCGGTTCGCTTAGGCAATCGGAGTTCATTCCAAGTCTAAGATCAGACTGGAC
586 CCCACTCGTTTCGTCCGTTCGCTTAGGCAATCGGAGTTCATTCCAAGTCTAAGATCAGACCAGAC
20415800 CGAGGGTTGCAACAGCACATTTCGGGCTCGGGCATGTGCTGCTACAGCATTTTTCTTCGCCGGGG
651 CGAGGGTTGCAACAGCACATTTCGGGCTCGGGCATGTGCTGCTACAGCATTTTTCTTCGCCGGGG
20415865 CAC
716 CAC
* ** * * **
20415868 CATCGTCAGAGCATCGACGGAGAACCTGACCGGCGGCATTATGGTTCCGACGATCGAGGGTGTTG
1 CATCGTCAGAGCATCGACGAAGAACCTGACCAACGGCATTAGGGTTCCGACGATCGAGGGGGCCG
* * * *
20415933 GGGGGTGTGCGCACATGATGCGCGATGGGTGCTGGCACTTGGCCGTTATATTGGCCCCCTATCCC
66 GGGGGTGTGCGCACATGATGCGCAATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCA
* *
20415998 TCATCAAACCTCAAGAACTCACACACCCTCAAAGATCATTTGAGATTTTACAGGTTTGCTGCTAG
131 TCATCAAACCTCAAGAACTCACACACCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
20416063 TAGCCATTAAAGTGCCTGAAATGGGGACACTTTTGCCAAATGGTCACAAAATCTTGTACACTTCG
196 TAGCCATTAAAGTGCCTGAAATGGGGACACTTTTGCCAAATGGTCACAAAATCTTGTACACTTCG
20416128 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATA-A-GGATCACGTCGACCAAGTTTG
261 AGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATACAGGGATCACGTCGACCAAGTTTG
* * * *
20416191 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTG
325 GGGCAAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATG
*
20416256 AAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
390 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
20416321 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
455 ATTTACAAGCCATAAAAATCGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
20416386 ACCCTATCGATCCACGGCTTACGCATCCCGTCTCTATGGCCGGTGCAGTGCCCGCCCGCCCGCCC
520 ACCCTATCGATCCACGGCTTACGCATCCCATCTCTATGGCCGGCGCAGTGCCCGCCCGCCCGCCC
** * ** **
20416451 GCCTGCTCGTTTCGTCCGTTGGCTTAGGC-ATACGGAGTTCATTCCCTGTCTAAGATTGGACCAG
585 GCCCACTCGTTTCGTCCGTTCGCTTAGGCAAT-CGGAGTTCATTCCAAGTCTAAGATCAGACCAG
20416515 ACCGAGGGTTGCA
649 ACCGAGGGTTGCA
20416528 GTAGCAGGAT
Statistics
Matches: 594, Mismatches: 64, Indels: 5
0.90 0.10 0.01
Matches are distributed among these distances:
716 2 0.00
717 320 0.54
718 263 0.44
719 9 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (718 bp):
CATCGTCAGAGCATCGACGAAGAACCTGACCAACGGCATTAGGGTTCCGACGATCGAGGGGGCCG
GGGGGTGTGCGCACATGATGCGCAATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCA
TCATCAAACCTCAAGAACTCACACACCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGCCTGAAATGGGGACACTTTTGCCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATCACGTCGACCAAGTTTGG
GGCAAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATCGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTACGCATCCCATCTCTATGGCCGGCGCAGTGCCCGCCCGCCCGCCCG
CCCACTCGTTTCGTCCGTTCGCTTAGGCAATCGGAGTTCATTCCAAGTCTAAGATCAGACCAGAC
CGAGGGTTGCAACAGCACATTTCGGGCTCGGGCATGTGCTGCTACAGCATTTTTCTTCGCCGGGG
CAC
Found at i:20418058 original size:719 final size:720
Alignment explanation
Indices: 20416674--20418129 Score: 2200
Period size: 719 Copynumber: 2.0 Consensus size: 720
20416664 GTACAGAGTT
* * * *
20416674 CATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACGTGCTGGGCTCGGGCATGTG
1 CATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTG
* * * *
20416739 CTGGTACCGCATTTGTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCG
66 CTGGGACCACATTTGTCTTCACTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCG
* * *
20416804 GTATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTG
131 GCATTGGGGTTCCGACGATCGGGGTGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
20416869 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAG
196 ATACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACTTAGAGAACTCACACCCCCTTAAAG
* *
20416934 AGCATTTGAGATTTTACAGGCTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
261 AGCATTTGAGATTTTACAGGCTTACAGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTT
*
20416999 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAAAA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * * * *
20417064 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCATCCCAAAAAATTTTAAAAAA
391 AAAAATAAAAGGATCACGACCACCAAGTTTGGGGCCAAAAATCCATCCAAAAAAATTTTAAAAAA
* * * *
20417129 TCTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
456 TCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
20417194 TCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAG
521 TCACGCGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
** * * *
20417259 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTC
586 AAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTC
* *
20417324 TCTGGTAGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGATGGCTTAGGCATACG
651 TCTCGCAGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGATGGCTTAGGCATACG
20417389 AAGTC
716 AAGTC
* * *
20417394 CATTCCCAATCTAAGATCAGACCCGACCGAGGGTTACGGCAGCACATGCTGGGGTCGGGCATGTG
1 CATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTG
* * * * * *
20417459 CTGGGGCCACATTTTTCTTC-GTCGGGGCACCATTGCCGGAGCATCACCGGAGAATCTGACTGGC
66 CTGGGACCACATTTGTCTTCACT-GGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGC
* *
20417523 GGCATTGGGGTTCCGATGATCGGGG-GGCCAGGGGGGTGTGCGCACATGATGTGCGGTGGGTGCT
130 GGCATTGGGGTTCCGACGATCGGGGTGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
20417587 GATACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTTAG-GAACTCACACCCCCTTAA
195 GATACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAA-CTTAGAGAACTCACACCCCCTTAA
* * * *
20417651 AGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAACGTGTCTGGAATGAGGACACTT
259 AGAGCATTTGAGATTTTACAGGCTTACAGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTT
* * *
20417716 TTTTCAAATGTTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGTGGATGCC-
324 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCA
* * *
20417780 AACAAAAATAAAAGGATCACGACCACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAG
388 AAAAAAAATAAAAGGATCACGACCACCAAGTTTGGGGCCAAAAATCCATCCAAAAAAATTTTAAA
* *
20417845 AAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
453 AAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
20417910 ACTTCACGCGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
518 ACTTCACGCGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
20417975 CAGAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCAT
583 CAGAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCAT
* * * ** ** * * *
20418040 CTCTTTCGCCGGCGTAGTGCCCGCTTGCCCGCCCGCCCGTTCGTTTCGTCTGTTGGCTTAGGCTT
648 CTCTCTCGCAGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGATGGCTTAGGCAT
* *
20418105 ACGGAGTT
713 ACGAAGTC
20418113 CATTCCCAATCTAAGAT
1 CATTCCCAATCTAAGAT
20418130 TGGACCAAGC
Statistics
Matches: 660, Mismatches: 73, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
719 509 0.77
720 151 0.23
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (720 bp):
CATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTG
CTGGGACCACATTTGTCTTCACTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCG
GCATTGGGGTTCCGACGATCGGGGTGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
ATACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACTTAGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGCTTACAGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAAATAAAAGGATCACGACCACCAAGTTTGGGGCCAAAAATCCATCCAAAAAAATTTTAAAAAA
TCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGCGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTC
TCTCGCAGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGATGGCTTAGGCATACG
AAGTC
Found at i:20418292 original size:26 final size:26
Alignment explanation
Indices: 20418262--20418312 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20418252 TGACTTAGGT
*
20418262 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
20418288 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
20418313 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:20421505 original size:26 final size:25
Alignment explanation
Indices: 20421476--20421527 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20421466 GTTGACTTAG
20421476 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
*
20421502 GCATACGGAGTTCATTCCATTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
20421527 G
1 G
20421528 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:20424195 original size:26 final size:25
Alignment explanation
Indices: 20424155--20424206 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
20424145 GTTGACTTAC
20424155 GCATACAGAGCTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCC-AGTCTAA
* * *
20424181 GCATACCGAGTTCATTCCAGTGTAA
1 GCATACAGAGCTCATTCCAGTCTAA
20424206 G
1 G
20424207 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACAGAGCTCATTCCAGTCTAA
Found at i:20426827 original size:26 final size:26
Alignment explanation
Indices: 20426797--20426849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20426787 GTTGACTTAG
*
20426797 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20426823 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20426849 G
1 G
20426850 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20427682 original size:902 final size:898
Alignment explanation
Indices: 20425928--20444722 Score: 15598
Period size: 901 Copynumber: 20.9 Consensus size: 898
20425918 TAGGCATACG
* ** * *
20425928 GAGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGA-CGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * * * * *
20425993 ATTTGCTGGTGCTGCATTTTTTTTCG-CTAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
65 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGA
* * *** *
20426057 CCGATGGCATTTGGGGTTCCGACGATCAACGGGG-CAGGGGGTGTGCGCACATGATGTGCGATGG
129 CCGACGGCA-TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
20426121 GTGCTGGTACTTGGCTCTTATATTGGGCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
20426186 TTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGAT
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
20426251 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
20426316 CCAACAAAAATATAAGGATCATGTCTAGCAAGTTTGGGGCTAAAGA-TCCTTCCGAAAAAATTTT
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-ACTCCTTCCGAAAAAATTTT
* ** * * * *
20426380 AAAAAATCTC-AACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGATAACTAGTCGTCCTACCAT
452 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
20426444 GAAACTTCACGTGAAGGCTTAAGGGACCCTTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * * * *
20426509 ACACAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCTTCT
582 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * ** ** *
20426574 CGTCTCTCTGGCTGACGTAGTGCCTGCCCGTCCATCCGCTTGCTCGTTTTGTCGATTGGCTTAGG
647 CGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTCG-TTGGCTTAGG
* * * ** * ** * * **
20426639 CATACAGAGTTCCTTCGCAGTCTAAGATTGGACCAAACCGGGGGTTGCAGTAGCAGGATCAACAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * *
20426704 CACGTAGAGGAGGACCCGACCGGTCCCCGGCTTACACATCCCGCCCCTCTGGCCGACTGAGCGCC
775 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * *
20426769 CACATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTGTAAGCATA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
20426828 CGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCAG
1 --GAGTTCATTCCCAGTCTAAGATCGGAC-GAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGG
* * *
20426893 GCATGTGCTGGTGTCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATAGCAGGAGAACCTG
63 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTG
* *
20426958 ACCAACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
128 ACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
** **
20427023 GTGCTGGTACTTGGCCCTTATGCTAACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
20427088 TTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAAGGTGTGTGAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * * * * *
20427153 ACTTTTTTCAAATGGTCTCAAAACCTTGTGCAGTTCGAGTTTTTAGCTGAATGTTTTTCTCCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
20427218 CCAACAAAAATACAAGGATCACGTCTTCCAAGCTTGGGGCCAAAACGCCTTCCGAAAAAATTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* ** * *
20427283 AAAAATCACGAACAACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATT
453 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
20427348 AAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
20427413 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
583 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * ** * *
20427478 GTCACTCTGGCCGGCGTAGTGCCTGTCTACCCACCCGCCCACTCGTTTCGTCTGTTGGCTTAGGC
648 GTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGC
* * * * * *
20427543 ATACGGAGTTCTTTCCCAGTCTAAGATCGGACCAGACCTAGGGTTGCAGCAGCAAGATTGGTAGC
711 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCAGGATCGGCAGC
* *** ** * * *
20427608 ATGCAGA-GGGGATTGGGTCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCA
776 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
20427672 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAATG
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-ATA
** * * * * *
20427731 GAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCACATGTTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACGA-ACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * * * * *
20427796 ATGTGCTAGTGTCGTATTTTTCTTCGCCAGGGCACCATCG-CTGGAGCATCGC-CGAGAACCTGA
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCAGGAGAACCTGA
* * *
20427859 CCGACGGCATTGGGGTTCCAGCGATCGAGGGGGCCGAGGGGGGTGTGTGCACATGATGTGCGATG
129 CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATG
20427924 GGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
20427987 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
20428052 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTATGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
20428117 GCCAACAAAAATAAAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * * *
20428182 AAAAAATCTTGAATCGTAAAAAGTTTCGAAAAGCGTGAAAAATAGAGAACGAGTCGTCTTGCCAT
452 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
** *
20428247 G-AACTTCACGTGATTGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-ATTTGG
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTGG
** * * *
20428310 CACACAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATC
581 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
20428375 CCGTCTCTCTGGCCGGCATAGTGCCCGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
646 CCGTCTCTCTGGCCGGCGTAGTGCCCG-----CCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGC
* * * * *
20428440 TTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGCAGGATC
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCAGGATC
* * * * * * * *
20428505 GGCAGCATGCAGAGGGAGACCCAACCGATCCCCAGCTTGCACATCCTGCCCCTCTGGCTGGTTGA
770 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
20428570 GCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT----A-A
835 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * **
20428629 G-G----TT----G-----GA-C---CAAACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
* * * * * * *
20428676 TGTGCTGGTGTCGTATTTCTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGATC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGACC
** * * **
20428741 GGTGACATTCTGGGCTCGAGCATGTGCTGGTTCGTATTTTTCTTCACTGGGGCACCATCGCCGAG
131 GACGGCA-T-T-GG---G-G--T-T-CCGG--CG-A-------T--C-GGGG-----GGGCCG-G
**** * ** * * * **** *
20428806 AACCTGATCGGCGGCA-TTGCGGTTCCGGTAATCGGGGGGTCGAGGGGGTGTGCACACATGATGT
166 GGGGTG-T--GC-GCACATGATG-TGC-G--AT-GGGTGCT-G-GTACTTG-GC-C-C-T--TAT
* * *** * ** * * *** **
20428870 GCGATGGGTGCTGGTACTTGGCCCTTAT-ATTGGCCCCCTATCCCTCATCA-AACCTTGAGAACT
214 ---ATTGG-CCCCCTA--T--CCCTCATCA---AACCTCGAGAACTCA-CACCCCCTT-A-AA--
* * ** * * * * *** * *
20428933 CA-CACCCCGTTAAAGAGCATTT-GAGATTT--T-ACAGGTTTG-C-TGCCAGTAGCCATTAAAG
263 GAGCA-----TT--TGAGATTTTACAGGTTTGCTGCCA-G-TAGCCATTAAAGT-GTC-TGAAA-
*** * * *
20428991 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
316 TGGGGACACT-T--------TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
20429056 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
372 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* ** * * *
20429121 TTCCG-AAAAATTTTAAAAAATCCCGAAATGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAAT
437 TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * * *
20429185 GAGTCGTCGTGGCATGAAACTTCACGAGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCAT
502 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** ** *
20429250 ACAAAATGGCATTGGCACACAGAAATATGAAGATGCACCTAAACCGACCTACCACCCTATCGATC
567 A-AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * *
20429315 CACGGCTTGCGTATCCCGTCTCTCTGGCCAG-GT-GCCCGCCCTCACGCCCGCCCACCCACTCGT
631 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG--TGCCCGC-CGCCCGCCCGCCCGCTCGT
* *
20429378 GTT-TTCTGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACC-AGGGGT
693 -TTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTA-GGGT
* * * *
20429441 TGTGGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGG-TTACGCATCCCGC
755 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-GGCTTGCGCATCCCGC
* * * * * *
20429505 CCCTCTGGCCTGTTAAGCACCTGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
819 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
20429570 CCCAG--T---C-TA
884 CCCAGTCTAAGCATA
* *
20429579 -AG---A-T--C-G----A-ATC-G--G-ACCGAGGGTTGTGACAGCACATGCTGGGCTCGAGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
** *
20429627 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-GGAGAACCTAAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGGAGAACCTGAC
* *
20429691 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAAGGGT
130 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
20429756 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
20429821 AAAGAGCATTTGAGATTTTAGAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
20429886 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-C
** ***
20429951 CAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAAGACTTCCGAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * ** * * *
20430015 AAAATCCCAAACCGTAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTAGCCATGA
454 AAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
20430080 AACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
20430145 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
584 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
** * * *
20430210 TCTCTCTGGCCGGTATAGTGCTCACCCGCCGCCTGCCTGCCCGCTTGTTTCGTCTGTTGGCTTAG
649 TCTCTCTGGCCGGCGTAGTG----CCCGCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAG
* ** * * **
20430275 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCAAACCAAGGGTTGCAACAGCAGGATCGGCA
709 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
20430340 GCACGCAGAGGGGGACCCGACTGATCCCCTGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGCAC
774 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* ** * *
20430405 CCGAACTATCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATA
839 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
20430465 TGGAGTTCTTTCCTAGTCTAAGATCGGACGGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGG
1 --GAGTTCATTCCCAGTCTAAGATCGGAC-GAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGG
* * *
20430530 GCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCAT-GACAGGAGAA-CT
63 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGGAGAACCT
* * * * ** * *
20430593 GACCGGCGGCATTGGGGTTCTGACAATCAAGGGGGCCAGAGGGGGTGTGTGCACATGATGTACGA
127 GACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGA
* * *
20430658 TGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCA-CAAACCTCGACAACTCTCACC
190 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
20430722 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
255 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
20430787 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGC
320 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
20430852 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATT
385 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
20430916 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCC
450 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
20430981 ATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
515 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
20431046 GCACGTAGAAATATGAAGATGTACCTAAACCCACGTACCACCCTATCGATCCACAGCTTGCGCAT
580 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * * * * * * *
20431111 CCTATCTCTTTGGCTGGCATAGTGCCCACCCGCCCGTCCTTCCGTCCGTTCGTTTCTTCAGTTGG
645 CCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCGCCCG--C--CCGCCCGCTCGTTTCGTC-GTTGG
* * *
20431176 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC-GAAC-AGAGGTTTACGGCAGCAGG
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAG-GG-TTGCGGCAGCAGG
* * * * * *
20431239 ATCGGTAGCATGCA-AGGGGGACCCGACTGATTCCCAGG-TTGCACATCCCGCCCCTCTGGCCTG
767 ATCGGCAGCACGCAGAGGGGGACCCGACCGA-TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
20431302 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGC
831 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
20431367 TTA
896 ATA
* * *
20431370 CGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATCGGACCGGACCGAGGGTTGTGACGGCACA
1 --GAGTTCATTCCCAG--T---C-TA---AG---ATCGGA-CGAACCGAGGGTTGTGGCAGCACA
* ** * * * * *
20431435 TGATGGGCTCAAGCATGTGCTAGTGCCGTATTTGTCTTCGTCGGGGCACCATTGTTGGAGCATCG
51 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * *
20431500 TC-GGAGAACCTGACC-AGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACAC
116 -CAGGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCAC
* *
20431563 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCAACAAACCTCGA
179 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
20431627 GAACTAACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
244 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
20431692 TTTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAA
309 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
20431757 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTCTGGGG-CAAAACACCTT
374 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* ** *
20431821 CC-AAAAGAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATTA-AAAA
439 CCGAAAA-AATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAA
* * * *
20431883 TGAGTCGTCTGGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCA
501 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * *
20431948 TAAAAAAGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCGTATCGATC
566 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
20432013 CACGGCTTGCGCATCCCTTCTCTCTGGCCAGCATAGTGCTCGCCTGCCCGTCCGCCAGCCCGCCT
631 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-G-CCG--C-CC-G--C-CC-
* * * *
20432078 GCCCGCTCGTTTCGTCGATTGGCCTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGA
683 GCCCGCTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * * * *
20432143 -CTGAGGGTTGTGGCAACAAGATCGACAGCACACAGAGAGGGACCCGGCCGATCCCCGGCTTGCG
747 CCT-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* *
20432207 CATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGG
811 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
20432272 AGTTCATTCCCAG--T---C-TA
876 AGTTCATTCCCAGTCTAAGCATA
* * *
20432289 -AG---A-T--CAG----ACA--GG-C---TCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
* * * * * **
20432337 TGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCAGAGCGTCGTTGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGACC
* * *
20432402 GATGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCAATGGGTG
131 GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
20432467 CTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
**
20432532 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCAGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
20432597 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
20432662 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAGAATTTTAAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * ** * * * *
20432727 AATCCCAAACCATATAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAA
456 AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * *
20432792 CTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGGATTCGCACAT
521 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * * *
20432857 GGAAATATGAAGATGTGCCTTAACCCACTTACCACCCTATCGATCCAC-GCTTGCGCATCTCGTC
586 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * *
20432921 TCTCTGGCCGGCTTAGTGCCCGCCCGCCCACCAGCCCGCCCATTTTGTCGGTTGGCTTAGGCATA
651 TCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCATA
* * ** ** *
20432986 CGGAGTTCATTTCCAGTCTAAGATCAGACC-GAACTGAGGGTTATGATAGCAGGATTGGCAGCAC
714 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCT-AGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * *
20433050 GCAGAGGAGGACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCAGCTGAGCGCCCGC
778 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
20433115 ACGCTCGTTTCGTGGGTTGACTTAGTCATACGAAGTTCATTCCCAGTCTAAGCATA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *
20433171 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGATGGGCTCGA
1 --GAGTTCATTCCCAGTCTAAGATCGGA-CGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGG
* * *
20433236 GCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCA-GAAAACCT
63 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGGAGAACCT
* * *
20433300 GACCGGCGGCATTGGGGTTCCGGCGATCAGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGAC
127 GACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGAT
*
20433365 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCC
191 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
** *
20433430 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCATTAAAGTGTCTAAAATGGGG
256 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
20433495 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
321 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
20433560 TGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCATAACTCCTTACGAAAAAATTT
386 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * ** *
20433625 TACAAAATCTGGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
451 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
20433690 TGAAACTTCAC-TGGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
516 TGAAACTTCACGT-GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
20433754 GCACGCAGAAATATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCAT
580 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ** ** *** ** *
20433819 CCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTACGCAGAGGGGGAC-C-TGACCGATCCTTGGC
645 CCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGC-CCGCCCG-CTCGT-TTCG-TCGTTGGC
* *** ** * * * * ** **
20433882 TT-GCGCATTCCGCCCTTC-TGGCC-GGCT--GAGC--ACCCGTACGCTTGTTTCATG-GGTTGA
705 TTAG-GCA-TACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-AC-CTAGGGT--TGCGGCAG-
* ***** * ** *
20433939 CTTAGGCATACGG-AGTTCATTCCCAGTCTAAGACCGGACCGGA-CCGAGGGTTGCGGCA----G
763 C--AGG-AT-CGGCAG--CA--CGCAGAGGGGGACCCGACC-GATCCCCGGCTTGC-GCATCCCG
* * * ** * * * * *
20433998 CACATGCTGGGCTCGGGCATGTGCTG-GTGTA-GCAT-TTTTC-T---TCG-C-CAGAGCATCGC
818 CCCCT-CT-GGC-C-GGC-TGAGC-GCCCGCACGC-TCGTTTCGTGGGTTGACTTAG-GCAT--A
** * ** * * *
20434054 CGGAGAACCTGACC-GAC--GGCATT
873 CGGAGTTCATTCCCAGTCTAAGCATA
* * ** ** * * *
20434077 G-G--GATT-CC-GGC---GATCGGGGGGGCC-AGGG-GGT-GCATGCACATGATGTGCGAT-GG
1 GAGTTCATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGTGGCA-GCACATGCTG-G-GCTCGG
* ** ** * * ** * * * * * * ***
20434130 G--TGCTGGTATTGGCC-C-CCTATC--CCTC--ATCA--AACCTC-AAG-AACTCA-AACCCCC
63 GCATG-TGCTGGT-GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACC
* * ** ** * * ** ** ***** ** *
20434182 TTA--AAAAGCATTTGAGATTTTACAGGC-TTCCTGCCAGTAGCCATTAAAGTGT-CTAAAATG-
126 TGACCGACGGCA-TTG-G-GGTT-CCGGCGAT-C-G-GGGGGGCC-GGGGGGTGTGCGCACATGA
* *** * * * * * **** ***
20434242 -GGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTT
183 TGTG-CGA-TGGGTGC---TGGT------A-CTTG-GCCCTT--A--TATTGGCCCCCTATCCCT
* ** *** * * * * * * *** **** *
20434304 TATGCATGCCAATAAAAAT-ACAAGGGTCACGTCTACCA-A--ATTTG-G--GGCA-AAAACTCC
231 CAT-CAAACCTCGAGAACTCAC-A---CCCCCT-TA-AAGAGCATTTGAGATTTTACAGGTTTGC
* * *** * * * ** * ** ** * * * *
20434361 TTCC-GAAAAAATTTTACAAAAT-CCTGAACT-GTAAAAAGTTTTGAAAATCGTGA-AAAATATA
289 TGCCAGTAGCCA--TT--AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
** ** * * ** *** * * * * * * * * *
20434422 AAACAAGTC-A---TCTCGCCATGAAACTTCACGTGAAGGCTTAAC--GAA-CCATTGTATGA-A
350 GTACACTTCGAGTTTTTAG-C-TGAATTTTTTTGTGCATGC-CAACAAAAATACA-AGGATCACG
* *** * * * * * * * * ** *
20434479 TTTA-CAA----GACACAAAAA-TGGCATTGGCAGGCAGAAATATGAAGATTTGC-CTAAACC-C
411 TCTACCAAGTTTGGGGCCAAAACT--CCTT--C-CGAAAAAATTTTAAAAAAT-CTC-GAACCGC
** ** *** * **** * ** * ** * * * * *
20434536 --ATCG-GCCACCCTATCGATCCACGCCTTGCGCATCCCGTC-TCTTTGGCC-GGCATAGTGCCC
469 AAAAAGTTTCA-AAAATCG-T-GAAAAATAG-AAAACGAGTCGTC-TT-GCCATG-AAACTTCAC
*** * ** * * ** * *** * **
20434596 GCTCGCCCGC--ACGCCCACTCATT-TCATCG-GTTGGATTAGGCATACGGA-GTTCATTCCCA-
527 G-T-GAAGGCTTAAG-GGAC-CATTGT-AT-GAATT-TACAAGCCATAAAAATG-GCATTGGCAC
* * * * * * * ** **
20434655 GTCTAAGATCAGA-ACGGACCGAGGGTTGCGC-CAACGGATCAGC-AGCACGCAGAGGGGGA-CC
584 G--T-AGA--A-ATA-TGA-AGA-TG-TGC-CTAAAC---CCACCTACCAC-CCTA--TCGATCC
* * * * * * * **
20434716 -CGGGCTTGCGCATCCTGCCCCTCT-G--GTCG-A----CTG-AG--CGTCCGTACGCTCGTTTC
632 AC-GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTC
** **** ** *
20434769 GT-GTAAAATGGCATT-GGC--ACGTAGAAAT-ATGAAGATGTGCCTAA-A-CCCACCTGCCACC
696 GTCGT----TGGC-TTAGGCATACG--GAGTTCATTCCCA-GT--CTAAGATCAGACCAG--ACC
** * * * * * ***** *
20434827 TTATCGAT-C--CA-C-GGCTTGTGCATCCCGTC-TTTCTGG--CCGA-CGTAGTGCCCACCCGC
749 -TAGGGTTGCGGCAGCAGGATCG-GCAGCACG-CAGAGGGGGACCCGACCG-A-T--CC-CCGGC
* * * ** * ** * * * * * * ** *
20434883 CTGCTCGTTTCGTCAGT-TGGCTTAGGCAT-A-CG---G-A-GTTC-ATTCCT-AGTCTAAGATC
806 TTGCGCATCCCGCCCCTCTGGC--CGGC-TGAGCGCCCGCACGCTCGTTTCGTGGGT-TGACTTA
** * *** *
20434938 GGACCGGACTGAGGGTT-A-TGGTAG-C-AAG-ATTG
867 GG--CATAC-G-GAGTTCATTCCCAGTCTAAGCA-TA
* ***** * * * * * * * * *** ** *
20434970 GCAG--CA--CGCAGAGGGGGACCCGATCGATCCCCA-GCTTG-CGCATCCCGCCCCTCTG-TCA
1 G-AGTTCATTCCCAGTCTAAGATCGGA-CGA-ACCGAGGGTTGTGGCAGCAC-ATGCTGGGCTCG
* * * ** * * * * *
20435028 AGC-TGAGC-GATCGCACGC--TCGT-TTCAT--GGGCTAACTTAGGCATACGGAGTTCATTCCC
62 GGCATGTGCTGGT-GC-CGCATTTTTCTTCGTCGGGGC--AC-CA-TCGT-CGGAG--CA-TCGC
*** * * * ***** *** *** * * *
20435086 AGTCTAAGCAT-ACGGA-GTTCATTCCCAAT-CAAAGATCGGACCAGACCGAGGGTTGTG-GCAG
117 AGGAGAA-CCTGACCGACG-GCATTGGGGTTCCGGCGATCGG-GGGGGCCGGGGGGTGTGCGCA-
* * * * * * *** ** * *
20435147 GCCATGCTGAGCTCGGGCATGTGCTGCCGCTGCATT-TTTCTTCAT-CGGGGCACC-ATCGCCGT
178 --CATGAT--G-T-GCG-ATG-GGTGCTGGTAC-TTGGCCCTT-ATATTGGCCCCCTATC-CC-T
* * * * ** * ** ** *** ****** *
20435209 -AGC-ATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTT
231 CATCAAACCTC-GAGAA-CTCA-C-ACCCCCTTAAAGAGCATTTGA---GATTTTAC---AGGTT
* * ** * * * * * ** **
20435272 TGC-GCACATGATGTGCGA-T-GGGTG-CTGGTACT-TGG-CCCTTATATTGGCCCCCTATCCCT
286 TGCTGC-CA-G-T-AGCCATTAAAGTGTCT-GAAATGGGGACACTT-T-TT----TCAAAT-GGT
* ** * ** *** ***
20435331 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
339 CA-CAAA-ATCTTGTA--CACTTCGAGTT-TTTAGC---TGA-ATTTT-----TTTG-TG-CA-T
** * * * * ** * ***
20435396 AGCC-ATTAAAGTGTCTGAAATTGGGA-CACTTTTTTCAA--ATGGTAACAAAATCTTGTCCACT
387 -GCCAACAAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGCCAAAA-C---T-C-CT
* * *** * **
20435457 T-TGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAAAAAATAAAAGGATCACGTCTACCAAGTT
438 TCCGA------A----AA--A-ATT-T---T----AAAAAAT--CTCGAAC-CG-C-AAAAAGTT
* * * ** * ** *
20435521 TGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCAAACCG-CAAAAAGTTTCA-AAAAT
477 T-----CAAAAAT-CGT--G-AAAAA---TAGAAAA---CGAGTCGTC-----TTGCCATGAAA-
* *
20435584 CGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
521 CTTC------------------------------------ACGTGAAGGCTTAAGGGACCATTGT
* * *
20435649 ATGTATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACC
550 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* *
20435714 TACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTG--C-CCGCCCG
615 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCG
* * * * * *
20435776 CCCGTCCGCTCATTTCATCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATC
680 CCCGCCCGCTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * *
20435841 AGA-TTGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGAGGACTC-AGTCAATCCCCGGCT
744 AGACCT-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCT
* * * * * *
20435904 TGTGCATCCCCCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGTCAT
807 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
20435969 ACGAAGTTCATTCCCAG--T---C-TA
872 ACGGAGTTCATTCCCAGTCTAAGCATA
* ** *
20435990 -AG---ATT----G-----GTTCGGACG----GAGGGTTACGGCAGCACATGCTGGGCTCAGGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
** * *
20436038 TGTGCTGGTGCCATATTTTTCTTTGTCGGGGCACCA---TC---G--T--C-GGAGAACCTGACT
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGACC
* * * * *
20436092 GGCGGTATTGGGGTTCCGACGATC-AGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTG
131 GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
** * *
20436156 CTGGTACTTGGCAATTATATTGGCCCCCTATCCCTCATCAAACCTTGGGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
20436221 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACATT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
20436286 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * ** * *
20436351 ACAAAAATACAAGGATCACATATACCAAGTTTGACGCCAAAACTCCTTCAGAAAAAATTTTAGAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * * **
20436416 AATCCCAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTATTTTCATGAAA
456 AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* ** *
20436481 CTTCACGTGAAGGCTTAAGGGACCATTGTATGTATTTACAAGAAATAAAAATGGCATTGGCATGT
521 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * * *
20436546 AGAAATATGAAGATATGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCAACCCGAC
586 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
** ** * *
20436611 TCTCTTACCGGCGTAGTGCCCGCCCGCCCAACCGCCCACTCGTTTCGTCGATTAGCTTAGGCATA
651 TCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTCG-TTGGCTTAGGCATA
* * * * *
20436676 TGGAGTTCATTCCCAATCTAAGATCAGACCAGA-CTGAGGGTTGTGGCAGCAAGATCGGTAGCAC
714 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCT-AGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * ** *
20436740 GCAGAGGGGCACCCGGCCGATCCCCGGGTTGTGCATTTCGCCCCTCTGGCCGGCTGAGTGCCCGC
778 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
20436805 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAG--T---C-TA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
20436855 G-G---------A-TC--AGATC-G--G-ACCGAGGGTTGTGGCAGCACATTCTGGGCTCAGGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
* * *
20436903 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGACC
* * * * * *
20436968 GGCGGTATTGGGGTTCCAGCAATCTGGGGGGCCGGAGGGTGGTGTGCGCACATCATGTGCGATGG
131 GACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-G-GGG-GGTGTGCGCACATGATGTGCGATGG
20437033 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
**
20437098 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCAGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* **
20437163 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTATTGTTTATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** * * *
20437228 CCAACAAAAATACATTGATCACGTCTACCAAGTTTAGGGCGAAAACTTCTTCCGAAAAAATTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* ** * *
20437293 AAAAAT-TCGAAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCAAT
453 AAAAATCTCG-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * **
20437357 GAAACTTTACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
20437422 ATGTAGAAATATGAAGATTTTCCTAGACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCC
582 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
20437487 CGTCTCTTTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCATTTCATCGATTGGCTTAGG
647 CGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTCG-TTGGCTTAGG
* * * * *
20437552 CATACGGAGTTCATTCCCGGTCTAAGATCGGACCA-AACTAAGGGTTGCGGCAGCAAGATCAGCA
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCT-AGGGTTGCGGCAGCAGGATCGGCA
* * * * *
20437616 GCATGTAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGTTGAGCGC
774 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
20437681 CCGTACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATA
839 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC--ATA
* * * * * *
20437743 GAGTTCATTCCC-CTCTAAGATCAGACCGGAGCGAGGGTTGTGGTAGCAGATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGA-CGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * * * **
20437807 ATATGCTGGTGCCACATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATTATC-GGAGAACCTGA
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA-TCGCAGGAGAACCTGA
* * * * * * * *
20437871 CCGGCGACATTAGGGTTTCGGCGATCGGGGGGGCCAAAGGGGTGTGTACGCACATGATTTGTGAT
129 CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGAT
* *
20437936 GGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTTGAGAACTCACACCC
191 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
20438001 CCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
256 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
20438065 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
321 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
20438130 TGCCACCAAAATATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAGATT
386 TGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** *
20438195 TTAAAAAATCTTGAACC-CTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
450 TTAAAAAATCTCGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
20438259 CATAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
514 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** * * *
20438324 GGCACGTAGAAGTATGAAGACT-TGCCTAAAGTCGCCTACCACCCTATCGATTCACAGCTTGCGC
579 GGCACGTAGAAATATGAAGA-TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
20438388 ATCACGTCTCTCTGGCCGACAG-AGTGCCTGCCTGCCCGCCCACCCACTTGTTTCGTCGGTTGGC
643 ATCCCGTCTCTCTGGCCGGC-GTAGTGCCCGCC-GCCCGCCCGCCCGCTCGTTTCGTC-GTTGGC
* * * * * *
20438452 TTAGGCATATGAAGTTCATTCCCAGTCTAACATCAGACCAGA--TGAGGGTTTCGACAGTAGGAT
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCT-AGGGTTGCGGCAGCAGGAT
* * * *
20438515 CGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGAGCATCCCACCCCTCTGGCCGGCTG
769 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
20438580 AGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAATTCATTCCCAGTCTAAGCATA
834 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * * * *
20438645 CGGAGTTCATTCCTAGTCTAAGATCGAACAAGATCAAGGGTTGCGGCCA-AACATGCTGGGCTCA
1 --GAGTTCATTCCCAGTCTAAGATCGGACGA-ACCGAGGGTTGTGG-CAGCACATGCTGGGCTCG
* ** *
20438709 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGAACCT
62 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCT
** *
20438774 GACCGACGGCATTGACG-TCCGAGCGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGA
127 GACCGACGGCATTGGGGTTCCG-GCGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGA
* ** * * *
20438838 TGGCTGCTTTTACTTGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-C
190 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
20438902 CCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGTGCCAGTAGCCATTAAAGTGTTTGAAATG
255 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC--TGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
20438967 GGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
318 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
20439032 GCATGCCAACAAAACTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
383 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
20439097 TTTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCGTGAACAATAGAAAACGAGTCGTCTT
448 TTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
20439161 GCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
20439226 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
577 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
20439291 CATCCCGTCTCTCTAGCCGGCGTAATG--C-CCGCCCGCCTGCCCGCTCGTTTCGTCGATTGGCT
642 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCG-TTGGCT
* * * * * * *
20439353 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTGCGGTAGCAGGATCT
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCAGGATCG
* * *
20439418 GCAACACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
771 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * * * *
20439483 CGCCTACACACTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCATAAA
836 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT--A
* ** * * *
20439548 GAATTTTTTCCCAGTATAAGATCCGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACGA-ACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * * * *
20439613 AAGTGCTGGGGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATAGC-GGAGAACCTGA-
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGAC
* * * * * *
20439676 CGACGGAATGGGGGTTCCGACGATCGAGGGGGCCGGAGGGGCGTGTGCGCACATGATGTGCTATT
130 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-G-GGGG-GTGTGCGCACATGATGTGCGATG
* * * *
20439741 GGTG-TTGTACTTGGCCCTTATATTGGCCCTCTATCCATCATCAAACCTC-AAAACTCACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
20439804 CTTAAAAAAGCATGTGAGATTTTTACAGGTTTGC--CTCAGTAGCCATTAAAGTTGTCTGAAAT-
257 CTT-AAAGAGCATTTGAGA-TTTTACAGGTTTGCTGC-CAGTAGCCATTAAAG-TGTCTGAAATG
* * * *
20439866 GGGACAC--TTTTCAAATGTTCACAAAATCCTGTACACTTCAAGTTTTTGGCTGAATTTTTTTGT
318 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
20439929 GCATGCCAAGAAAAATAGAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTACTTTCC-AAAAA
383 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAA
* *
20439993 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAATTAGAAAACGAGTTGTCTT
447 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
20440058 GCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-CAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
20440122 TTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTGCCACCCCTATCGATCCACGGCTAAC
577 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACGGCTTGC
* * * *
20440187 GCATCCCGTCTTTCTGGCCGACGTAGTG--C-CCGCCCGCCTGACCGCTCGTTTCGTCGGTTGGC
641 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGC
* * * * * * * *
20440249 TTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGATCGGACCGAGGGTTGCAGCACCAAGATC
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCAGGATC
* * * *
20440314 GACAGCACGCAGAGGGGGACCCGACCAATCCCCAGCTTGCGCATCCCGCCACTCTGGCCGGCTGA
770 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
20440379 GCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA
835 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
*
20440437 -AG---A-T--C-G-----GAT-GG--G-ACCG-GGGCTTATGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACGAACCGAGGG-TTGTGGCAGCACATGCTGGGCTCGGGC
* * ** **
20440484 ATGAGCTGGTACCGCATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCGCCA-GAGAACCTGA
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGGAGAACCTGA
* * *
20440548 CCAACGGCATTAGGGTTCCGGCGATC-GGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGG
129 CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
20440612 TGCTGGTACTTGGCCCTTATATAGGCCCCCTATCCCTCACCAGACCTCGAGAACTCACACCCCTT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
20440677 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
20440742 CTTTTATCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
20440807 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAACACTCTTTCTGAAGAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
20440872 AAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAATATAGAAAACGAGTCGTCTTGCCATGA
454 AAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
20440937 AACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCAT
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
20441002 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCG
584 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
20441067 TCTCTCTGGCCAGCGTAATG--C-CCGCCCGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCAT
649 TCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCG-TTGGCTTAGGCAT
* * * * * * * * ** * *
20441129 ATGGAGTTCATTCCTAGTCTAAGATCCGACCGGATCGAGGGTTACAGCAGCAGGATCTACAACAT
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * *
20441194 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGTGCCCAC
778 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
20441259 ACACTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCATAAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT--A
* *
20441317 GAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACGA-ACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * * * *
20441382 ATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCAT-TTCGGAGCATAGCCGGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGAC
* * * * * *
20441446 CGACGGAATTGGGGTTCTGACGATCGAGGGGGCCGGAAGGGCGTGTGCGCACATGATGTGCTATT
130 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG--GGG-GTGTGCGCACATGATGTGCGATG
* * *
20441511 GGTGTTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
20441576 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
20441641 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGCTGAATTTGTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
20441706 GCCAAGAAAAATAGAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTACTTTCC-AAAAAATTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTT
* * *
20441770 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAATTAGAAAACGAGTTGTCTTCCCA
451 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
20441835 CGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-CAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * **
20441899 CACGTAGAAATATGAAGATGTGCCAAAACCCACCTGCCACCCTATCGATCCACAGCTAACGCATC
581 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
20441964 CCGTCTCTCTGGCCGACGTAGTG--C-CCGCCCGCCTGACCGCTCATTTCGTCGGTTGGCTTAGG
646 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGG
* * * * * * * *
20442026 CATACGGAGTTCATTCCCAATCTAAGATTAGATCGGACCGAGGGTTGCAGCACCAAGGATCGACA
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGC-AGGATCGGCA
* * *
20442091 GCACGCAGAGGGGGACCCGACCAATCCCCAGCTTGCGCATCCCGCCACTCTGGCCGGCTGAGCGC
774 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
20442156 CCGCATGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA
839 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
*
20442210 -AG---A-T--C-G-----GA-CGG--G-ACCG-GGGCTTATGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACGAACCGAGGG-TTGTGGCAGCACATGCTGGGCTCGGGC
* * ** **
20442257 ATGAGCTGGTACCGCATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCGCCA-GAGAACCTGA
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGGAGAACCTGA
*
20442321 CCAACGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGG
129 CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
20442384 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
20442449 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
20442514 CTTTTATCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
20442579 CAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAACACTCTTTCTGAAGAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
20442644 AAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
454 AAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
20442709 AACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
20442774 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCG
584 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
20442839 TCTCTCTGGCCGGAGTAATG--C-CCGCCCGCTCGCCCGCTCGTTTCATCGATTGGCTTAGGCAT
649 TCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCG-TTGGCTTAGGCAT
* * * * * * * * *
20442901 ATGGAGTTCATTCCTAGTCTAAGATCCGACCGGATCGAGGGTTACGGCAGCAGGATCTGCAACAC
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCAGGATCGGCAGCAC
* *
20442966 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCAC
778 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
20443031 ACACTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCATAAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT--A
* * * *
20443089 GAATTCATTCCCAGTCTAAGACCGGACCAGACCGAGGGTTGTCGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACGA-ACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * * * *
20443154 ATGTGCTGGTGCCACATTTTTCTTCTTCGAGGCACCATCGTCGGAGCATAGCTGGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGAC
* * * * * *
20443219 CGACGGAATTGGGGTTCTGACGATCGAGGGGGCCGGAGGGGCGTGTGCGCACATGATGTGCTATT
130 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-G-GGGG-GTGTGCGCACATGATGTGCGATG
* * *
20443284 GGTGTTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
20443349 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
20443414 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTACAAGTTTTTGGCTGAATTTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
20443479 GCCAAGAAAAATAGAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTACTTTCC-AAAAAATTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTT
* * *
20443543 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAATTAGAAAACGAGTTGTCTTGCCA
451 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
20443608 CGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-CAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * **
20443672 CACGTAGAAATATGAAGATGTGCCAAAACCCACCTGCCACCCTATCGATCCACGGCTAACGCATC
581 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* ** * *
20443737 CCGTCTCTCTGGCCGACGTAGTG--C-CCGCCCGCCCTACCGCTCATTTTGTCGGTTGGCTTAGG
646 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGG
* * * * * * *
20443799 CATACGGAGTTCATTCGCAATCTAAGATCAGACCGGACCGAGGGTTGCAGCACCAGGATCGACAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCAGGATCGGCAG
* * * *
20443864 CACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCCCGCCACTCTGGTCGGCTGAGCGCC
775 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
20443929 CGCATGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
*
20443982 -AG---A-T--C-G-----GA-CGG--G-ACCGGGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
* * * ** * **
20444030 TGAGCTGGTACCGGATTTTTCTTCCCCGAGGCACCATCACCGGAGCATCGCCA-GAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGGAGAACCTGAC
*
20444094 CAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
130 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
20444159 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
20444224 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
20444289 TTTTATCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
20444354 AACAAAAATACAAGGATCACGTCTACTAAGTTTGTGGCCAAAACTCCTTCCGAAAAAATTTAAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * * *
20444419 AAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAATAATAGAAAATGAGTCGTCTTGCCATTAA
455 AAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* ** * **
20444484 ACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGAAATAAAAAAGGCATTGGCTTG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
20444549 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
585 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
20444614 CTCTCTGGCCAGCGTAGT-------GCCCGCCCGTCCGCTTGTTTTGTCGGTTGGCTTAGGCATA
650 CTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCATA
* * * * *
20444672 GGGAGTTCATTCCCACTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
714 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCA
20444723 CATGTTGGGC
Statistics
Matches: 14522, Mismatches: 2451, Indels: 1873
0.77 0.13 0.10
Matches are distributed among these distances:
861 131 0.01
862 1 0.00
863 1 0.00
864 1 0.00
865 254 0.02
868 1 0.00
869 130 0.01
870 86 0.01
871 576 0.04
872 995 0.07
873 164 0.01
874 6 0.00
875 188 0.01
876 261 0.02
877 205 0.01
878 118 0.01
879 92 0.01
880 841 0.06
881 14 0.00
882 10 0.00
883 12 0.00
884 18 0.00
885 25 0.00
886 25 0.00
887 187 0.01
888 252 0.02
889 194 0.01
890 16 0.00
891 14 0.00
892 26 0.00
893 60 0.00
894 54 0.00
895 50 0.00
896 87 0.01
897 637 0.04
898 140 0.01
899 240 0.02
900 635 0.04
901 1204 0.08
902 1095 0.08
903 913 0.06
904 671 0.05
905 1122 0.08
906 395 0.03
907 89 0.01
908 27 0.00
909 28 0.00
910 35 0.00
911 43 0.00
912 28 0.00
913 21 0.00
914 13 0.00
915 40 0.00
916 441 0.03
917 96 0.01
918 52 0.00
919 11 0.00
920 6 0.00
921 13 0.00
922 10 0.00
923 6 0.00
924 87 0.01
925 96 0.01
926 2 0.00
927 8 0.00
928 3 0.00
929 6 0.00
930 5 0.00
931 4 0.00
932 3 0.00
933 6 0.00
935 8 0.00
936 8 0.00
937 4 0.00
938 6 0.00
939 2 0.00
940 7 0.00
941 4 0.00
942 11 0.00
943 6 0.00
944 12 0.00
945 19 0.00
946 8 0.00
947 14 0.00
948 5 0.00
949 2 0.00
950 16 0.00
951 288 0.02
952 7 0.00
953 64 0.00
954 159 0.01
955 93 0.01
956 1 0.00
957 1 0.00
959 5 0.00
960 3 0.00
961 1 0.00
963 4 0.00
964 7 0.00
965 1 0.00
966 4 0.00
967 4 0.00
968 3 0.00
969 3 0.00
971 2 0.00
972 6 0.00
973 11 0.00
974 15 0.00
975 5 0.00
976 1 0.00
977 2 0.00
979 1 0.00
980 11 0.00
981 1 0.00
982 8 0.00
983 22 0.00
984 12 0.00
985 6 0.00
986 2 0.00
987 1 0.00
988 1 0.00
989 6 0.00
991 15 0.00
992 13 0.00
993 10 0.00
994 1 0.00
995 2 0.00
1000 1 0.00
1003 1 0.00
1004 2 0.00
1005 6 0.00
1006 11 0.00
1007 6 0.00
1008 5 0.00
1009 7 0.00
1010 4 0.00
1011 4 0.00
1014 2 0.00
1015 21 0.00
1016 7 0.00
1017 6 0.00
1018 10 0.00
1019 16 0.00
1020 18 0.00
1021 27 0.00
1022 16 0.00
1023 29 0.00
1024 522 0.04
1025 701 0.05
1026 808 0.06
1027 860 0.06
1028 763 0.05
1029 982 0.07
1030 697 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GAGTTCATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGACC
GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
Found at i:20430464 original size:26 final size:26
Alignment explanation
Indices: 20430434--20430486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20430424 GTTGACTTAG
20430434 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
* *
20430460 GCATATGGAGTTCTTTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20430486 G
1 G
20430487 ATCGGACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:20431372 original size:26 final size:26
Alignment explanation
Indices: 20431339--20431405 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
20431329 GTTGACTTAG
20431339 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* * *
20431365 GCTTACGGAGTTCATTCCCAGTCTAG
1 GCATACGGAGTTCATTCCAAGTCTAA
20431391 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
20431406 CGGACCGGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:20433177 original size:26 final size:26
Alignment explanation
Indices: 20433141--20433192 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20433131 TTGACTTAGT
20433141 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
*
20433167 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
20433193 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:20438653 original size:26 final size:26
Alignment explanation
Indices: 20438614--20438666 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20438604 GTTGACTTAG
*
20438614 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
20438640 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
20438666 G
1 G
20438667 ATCGAACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:20445313 original size:711 final size:713
Alignment explanation
Indices: 20443946--20445429 Score: 2244
Period size: 711 Copynumber: 2.1 Consensus size: 713
20443936 TCATTCCGTG
* * * *
20443946 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGGACCGGGGGTTGTGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
* *
20444011 CACATGCTGGGCTCGGGCATGAGCTGGTACCGGATTTTTCTTCCCCGAGGCACCATCACCGGAGC
66 CACATGCTGGGCTCGGGCATGAGCTGGTACCGCATTTTTCTTCCCCGAGGCACCATCACCAGAGC
* *
20444076 ATCGCCAGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGC
131 ATCACCAGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGAGGTGTGCGC
* * *
20444141 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTC
196 ACATGATCTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
20444206 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
261 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
20444271 TGTCTGAAATGGGGACACTTTTATCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
326 TGTCTGAAATGGGGACACTTTTATCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
20444336 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGTGGCCAAAACTCC
391 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACTAAGTTTGGGGCCAAAACTCC
* * * * *
20444401 TTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAATAATAGAAAAT
456 TTCCAAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * * *
20444466 GAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGAAAT
521 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAAG
**
20444531 AAAAAAGGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
586 AAAAAAGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
20444596 ACGGCTTGCGCATCCCGTCTCTCTGGCC-AGCGTA-G-TGCCCGCCCG-TCCGCTTGTTTTGTC
651 ACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGGCTGCCCGCCCGCCCCGCTCGTTTCGTC
* *
20444656 GGTTGGCTTAGGCATAGGGAGTTCATTCCCACTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
* * * * * * * **
20444721 CACATGTTGGGCTCGGGCATGTGCTGGTGCTGCTTTTTTCTTCGCCGGGGCACCATCGTCAGAGC
66 CACATGCTGGGCTCGGGCATGAGCTGGTACCGCATTTTTCTTCCCCGAGGCACCATCACCAGAGC
* * * *
20444786 ATCACCGGAGAACCTGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGAGAGGTGTGCG
131 ATCACCAGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GAGGTGTGCG
*
20444851 CACATGATCTAG-GAAGGGTGCTGGTACTTGGCCAC-TATATTGGCCCCCTATCCCTCATGAAAC
195 CACATGATCT-GCGAAGGGTGCTGGTACTTGGCC-CTTATATTGGCCCCCTATCCCTCATCAAAC
20444914 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
258 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
20444979 AAGTGTCTGAACTGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
323 AAGTGTCTGAAATGGGGACACTTTTATCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
20445044 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTAC-AATGTTTGGGGCCAGAA
388 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACTAA-GTTTGGGGCCAAAA
** * *
20445108 CTCCTTCCAAAAAAATTTTGAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
452 CTCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
* *
20445173 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACTAG
517 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** * *
20445238 CCAGAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
582 AAAGAAAAAAGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
20445303 ATCCACGGCTTGCGCTTCCCGTCTCTCTGGTCGACGTAGTGCCTGCCCGCCCGCCCACCCGCTCG
647 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG-G-CTGCCCGCCCG--C-CCCGCTCG
20445368 TTTCGTC
707 TTTCGTC
* * * * *
20445375 GATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
20445430 ATTACGGTAG
Statistics
Matches: 694, Mismatches: 67, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
710 164 0.24
711 456 0.66
712 3 0.00
713 1 0.00
715 10 0.01
719 60 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (713 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
CACATGCTGGGCTCGGGCATGAGCTGGTACCGCATTTTTCTTCCCCGAGGCACCATCACCAGAGC
ATCACCAGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGAGGTGTGCGC
ACATGATCTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTATCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACTAAGTTTGGGGCCAAAACTCC
TTCCAAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAAG
AAAAAAGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGGCTGCCCGCCCGCCCCGCTCGTTTCGTC
Found at i:20448170 original size:26 final size:26
Alignment explanation
Indices: 20448134--20448186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20448124 CTTGATTTAG
20448134 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
* *
20448160 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
20448186 G
1 G
20448187 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:20449419 original size:879 final size:878
Alignment explanation
Indices: 20447397--20452557 Score: 6446
Period size: 878 Copynumber: 5.9 Consensus size: 878
20447387 ACCATCACCG
* * * *
20447397 GACGACATTGGGGTTCCTG-TGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATTGGT
1 GACGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
20447461 GCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
65 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
* *
20447526 AAAGAGCATTTGAGAGTTTTACAGGTTTGCTGCCTGTAGCCATTAGAGTGTCTGAAATGGGGACA
130 AAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
20447591 GTTTTTTCAAATGGTCACAAAATATTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCATGC
194 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
20447656 CAACAAAAATAAAAGGATCACGTCTACCAATTTTGGGG-CAAAACTCCTTCC-ATAAAAATTTTA
259 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-AAAAATTTTA
* * * * *
20447719 AAAAATCCCAAACCGTAAAAATTTTTTAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATG
323 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * **
20447784 AAACCTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAA-CCATAAAAATGGAATTCACA
388 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
20447848 CGCAAAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCCATCCACGGCTTGCGCATCTC
453 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * * *
20447913 GTCTCTTTGGCTGGTGTAGTGCCCACCTGCCCGCCCGCCTGCTCATTTCGTCAGTTGGCTTAGGC
518 ATCTCTCTGGCCGGCGTAGTGCCCGCCT-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** ** * *
20447978 ATACCGAGTTCATTCCCAGTCTAAGATCAGATCAGATTGAGGGTTGCGCCAGCAGGATTGGCAAC
582 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
* * * * *
20448043 ATGCAGAGGGGGACCTGG-CTAAT-CCTCGACTTGCGCATCCCG-CCCTCTGGCCGACTGAGTGC
647 ACGCAGAGGGGGACCCGGTCTGATCCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
20448105 CCACACACTCGTTT-GGTGGCTTGATTTAGGCATACGGAGTTCATTCCCAGTATAAGCATATGGA
712 CCACACGCTCGTTTCGTTGG-TTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---A
* * * *
20448169 GTTCATTCCCAGTCTAAGATCAGATCGGTCTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
767 G---A-T--C-G-----GA-C---T-GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
20448234 GTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---C---G--T------------TG---
815 GTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACC
* * * *
20448275 GACGGAATTGGGGTTCCTG-CGATCGGGAGAGTCGGGGGGTGTGTGCGCACATGATGTGCGATGG
1 GACGGCATTGGGGTTCC-GACGATCGGG-GGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGG
* *
20448339 GTGCTAGTACTTGGCCCTTATCTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCC
63 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
**
20448403 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGTGT-TCGAAATGGGGA
128 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGA
* * *
20448467 CACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCAA
192 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
** *
20448532 GGAAAAAAAAATA-AAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTT
257 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
20448596 AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGACAAATAGAAAACGAGTCGTCTTGCCAT
322 AAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
20448661 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
387 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
20448726 -TCGCCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
452 AT-G-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * ** *
20448789 CGCATCTCTCTGGTCGGCGTAGTGCCCGACCTCCCGCCCGCCCGCTCGTTTTGTTAGTTGCCTTA
515 CCCATCTCTCTGGCCGGCGTAGTGCCCG-CCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
** * *
20448854 GGCATACGGAGTTCATTCCCAGTCTAAGATCACCCCAGACCGAGGGTTGTGATAGCAGGATCGGC
579 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
* * *
20448919 AGCGCGCAGAGGGGGACCCGGTC-GATCCCTAG-CTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
644 AGCACGCAGAGGGGGACCCGGTCTGATCCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
20448982 CGCCCACACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
709 CGCCCACACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* *
20449047 CTGGACTGAGGGTTGCAGCAGCACATGCTGAGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG
774 CTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG
**
20449112 TCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
839 TCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACC
* * * *
20449152 GGCGGCATTAGGGTTCTGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTG
1 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
20449217 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTTGAGAACTCACACCCCCTTA
66 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* *
20449282 AAGGGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
131 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
20449347 CTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGATTTTTTTTGTGCATGCCA
196 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-
* * *
20449412 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAATTTAAA
260 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
20449477 AAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAATATAGAAAACGAGTCGTCTTGCCATGAA
325 AAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * ** *
20449542 ACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTTCAAGTTATAAAAATGGCATTGGCAGG
390 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
20449607 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCGCATCTCAT
455 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
* * * * *
20449672 CTCTTTTGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAG
520 CTCTCTGGCCGGCGTAGT----GCCCG-CCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * *
20449737 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGATGGTTGTGGCTA-CAGGATCGGC
580 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG-TAGCAGGATCGGC
* * * * *
20449801 AGCACGTAGAGGGGGACCC-GACAGATCCC-CGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAG
644 AGCACGCAGAGGGGGACCCGGTCTGATCCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
20449864 CGCCCACACGCTCATTTCATGGGTTGACTTAGGCTTACGGAGGTCATTCCCAGTCTAAGCATACG
709 CGCCCACACGCTCGTTTC-------G--TT-GG-TT---GA---C-TT---AG-----GCATACG
* * * * * *
20449929 GAGTCCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTG-TGACATCACATGCTGGGCTCGGG
748 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGG
* ** *
20449993 CATGTGCTGGTGCCGTATTTTTCTTC-ACTGGGGCACCATCGCCGGAGCATTGCCAGAGAACCTG
812 CATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
20450057 ACC
876 ACC
* ** * **
20450060 GACGTCATTGGGGTTCCGGGGATC------G-AGGGGGGTGTGCGCACATGATGTTTG-TAGGGT
1 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT-GGGT
*
20450117 GCTGGTACTTGGCCCTTATATTGGCCCCCTATACCAT-ATCAAACCTTGAGAACTCACACCCCCT
65 GCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAACCTTGAGAACTCACACCCCCT
* * *
20450181 TAAAGTGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
129 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
20450246 CTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTGGTTGAATTTTTTTGTGCATGC
194 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
20450311 CAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAA
259 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
20450376 AAAATCTCGAACCGTAAAACA-TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
324 AAAATCCCGAACCGCAAAA-AGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
20450440 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCA
388 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
20450505 TGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCTTATCGATCCACGGCTTGCGCATCCC
453 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * ** * * * * *
20450570 GTCTCTCTAGCCGGCGTAGTGTTCGCCCCCCCGCCTGCCTGCTCGTTTCGTCGGTAGGCTTACGC
518 ATCTCTCTGGCCGGCGTAGTGCCCG-CCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
20450635 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATCGACAGC
582 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
* * * * * *
20450700 ACGCAGAGGGGGACTC-GACTGGTCCC-CGGCTTGCGCATCCCG-CCCTATGGTCGGCTGAGCGC
647 ACGCAGAGGGGGACCCGGTCTGATCCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * * * * *
20450762 CCGA-ACGCTCGTTTCGTCGGTTAACTTACGCATACAGAGTTGATTCCCAGCCTAAGATC-AAAT
712 CC-ACACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
* *
20450825 CGGACCGAGGGTTGCCA-CAGCACATGCTGGGCTCGGGCAATGTACTGGTGCCATATTTTTCTTC
776 -GGACCGAGGGTTG-CAGCAGCACATGCTGGGCTCGGGC-ATGTGCTGGTGCCGTATTTTTCTTC
* *
20450889 GTCGGGGCACCATCACCGAAGCATCACCGGAGAACCTGACC
838 GTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACC
* * * *
20450930 GGCGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGTGTGCACACATGATGTGCAATGGGT
1 GACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
* * **
20450995 GCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATTAAACCTCAAGAACTCACACCCCCTT
65 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
*
20451060 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACAC
130 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
20451125 TTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
195 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
20451190 AACAAAAATACAAGGATCATATCTACCAAGTTTGTGGCCAAAACTCCTTCTGAAAAAATTTAAAA
260 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * * *
20451255 AAATCCCGAACCGCAAAGAGTTTTGAAAATCGTGAATAATAGAAAATGAATCGTCTTGCCATTAA
325 AAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* **
20451320 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGAAATAAAAATGGCATTGGCATG
390 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
20451385 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
455 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
*
20451450 CTCTCTAGCCGGCGTAGT----GCCT---GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
520 CTCTCTGGCCGGCGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * *
20451508 CGAAGTTCATTCCCAGTAGAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCATG
585 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACG
* * *
20451573 CAGAGGGGGACCCGGTC-GATCCC-CGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAACGCCCG
650 CAGAGGGGGACCCGGTCTGATCCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCA
* * * * * * * * **
20451636 TACGCTCGTTTCGTGGGTTGATTTAGGCATACAGAGTTCTTTCCAACTCTAAGATCGTACCAGAC
715 CACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
* * * * * ** *
20451701 CGAGGGTTGCGGCAGTACATGCTGGGGTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGTGG
780 CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
*
20451766 CACCATCGTCGGAGCATCACCGGAGAACCTGACC
845 CACCATCGCCGGAGCATCACCGGAGAACCTGACC
* *
20451800 GACAGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
1 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* ** *
20451864 CCGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACTCCCTTA
66 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
*
20451928 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACA
131 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
** *
20451993 TTTTTCAAATACTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATGTTTTTT-TGCATGCC
196 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCC
* * *
20452057 AACAAAAATACAAGCATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
260 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
20452122 AAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
325 AAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
20452187 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
390 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* ** * *
20452252 TAGAAATATGGGGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGT
455 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
* * *
20452317 CTCTCTGGCCGGCGTAGTGCCCG---CCCGCCCGTCTGCTCGTTTTGTCGGTTGGCTTAGGCATA
520 CTCTCTGGCCGGCGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * * **
20452379 CGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAAGGTTGCGGTAGTAGGATTGGCAGCATA
585 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACG
* * * * * *
20452444 CAGAGGAGGACCTGGTC-GAT-CCTCGACTTGCGCATCTCACCACTCTGGCCGGCTGAGCGCCCG
650 CAGAGGGGGACCCGGTCTGATCCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCA
*
20452507 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
715 CACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
20452558 ACTTATGGAG
Statistics
Matches: 3764, Mismatches: 406, Indels: 234
0.85 0.09 0.05
Matches are distributed among these distances:
854 71 0.02
855 1 0.00
857 1 0.00
858 1 0.00
859 2 0.00
860 1 0.00
862 1 0.00
864 1 0.00
865 1 0.00
867 410 0.11
868 60 0.02
869 65 0.02
870 285 0.08
871 280 0.07
872 1 0.00
873 2 0.00
874 6 0.00
875 82 0.02
876 130 0.03
877 64 0.02
878 960 0.26
879 237 0.06
880 149 0.04
881 8 0.00
882 159 0.04
883 2 0.00
884 2 0.00
885 2 0.00
886 1 0.00
888 1 0.00
889 1 0.00
891 2 0.00
892 2 0.00
893 2 0.00
895 31 0.01
896 130 0.03
899 1 0.00
900 255 0.07
901 207 0.05
902 3 0.00
903 2 0.00
907 2 0.00
908 140 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (878 bp):
GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATC
TCTCTGGCCGGCGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGGTCTGATCCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCAC
ACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACC
GAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGC
ACCATCGCCGGAGCATCACCGGAGAACCTGACC
Found at i:20449699 original size:4 final size:4
Alignment explanation
Indices: 20449690--20449715 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
20449680 CCGGCGTAGT
20449690 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
20449716 TCGTTTCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:20449928 original size:26 final size:26
Alignment explanation
Indices: 20449899--20449948 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20449889 GACTTAGGCT
20449899 TACGGAGGT-CATTCCCAGTCTAAGCA
1 TACGGA-GTCCATTCCCAGTCTAAGCA
20449925 TACGGAGTCCATTCCCAGTCTAAG
1 TACGGAGTCCATTCCCAGTCTAAG
20449949 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (26 bp):
TACGGAGTCCATTCCCAGTCTAAGCA
Found at i:20452706 original size:184 final size:185
Alignment explanation
Indices: 20452375--20452798 Score: 519
Period size: 184 Copynumber: 2.3 Consensus size: 185
20452365 TTGGCTTAGG
* * * * * *
20452375 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAAGGTTGCGGTAGTAGGATTGGCAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * *
20452440 CATACAGAGGAGGACCTGGTCGATCCTCGACTTGCGCATCTCACCACTCTGGCCGGCTGAGCGCC
66 CATACAGAGGAGGACCCGGTCAATCCCCGACTTGCACATCCCACCACTCTGGCCGGCTGAACGCC
* * * *
20452505 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAA
131 CGCACGCTCATTTCGTGGGTTGACCTAGGCATACAGAGTTCATTCCCAATCTAAA
* * * **
20452559 CTTATGGAGTTCATTCCCAGTCTAAGATTTGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * * *
20452624 CATGCAGAGGGGGACCCGGTCAATCCCC-AGCTTGCATATCCCACCCCTTTGGCCGGTTGAATGC
66 CATACAGAGGAGGACCCGGTCAATCCCCGA-CTTGCACATCCCACCACTCTGGCCGGCTGAACGC
* * *
20452688 CCGTACGCTTATTTCGTGGGTTGACCTAGGCATACAGAGTTCATTCCCAATCTAAG
130 CCGCACGCTCATTTCGTGGGTTGACCTAGGCATACAGAGTTCATTCCCAATCTAAA
** *
20452744 CATACGAAGTTCATTCCCAGTCTAAGATCGGATAGGATCGAGGGTTGCGACAGCA
1 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCA
20452799 CATGCTAGAC
Statistics
Matches: 199, Mismatches: 39, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
183 1 0.01
184 143 0.72
185 55 0.28
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (185 bp):
CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAG
CATACAGAGGAGGACCCGGTCAATCCCCGACTTGCACATCCCACCACTCTGGCCGGCTGAACGCC
CGCACGCTCATTTCGTGGGTTGACCTAGGCATACAGAGTTCATTCCCAATCTAAA
Found at i:20452754 original size:26 final size:26
Alignment explanation
Indices: 20452717--20452769 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20452707 GTTGACCTAG
20452717 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
20452743 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
20452769 G
1 G
20452770 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20454505 original size:26 final size:26
Alignment explanation
Indices: 20454469--20454521 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20454459 GTTGACTTAG
20454469 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20454495 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20454521 G
1 G
20454522 GTCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20454874 original size:869 final size:864
Alignment explanation
Indices: 20452564--20455627 Score: 3130
Period size: 869 Copynumber: 3.5 Consensus size: 864
20452554 CTAAACTTAT
**** * * * *
20452564 GGAGTTCATTCCCAGTCTAAGATTTGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCATGC
1 GGAGTTCATTCCCAGTCTAAGAACACATCGGACCGAGGGTTGC-GCAACAGGATCGGCAGCACGC
* * ** * * * ** **
20452629 AGAGGGGGACCCGGTCAATCCCCAGCTTGCATATCCCACCCCTTTGGCCGGTTGAATGCCCGTAC
65 AGAGGGGGA-CCGGCCTATCCCCAGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCACAC
** * * * *
20452694 GCTTATTTCGTGGGTTGACCTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGAAGTTCATT
129 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * * *
20452759 CCCAGTCTAAGATCGGATAGGATCGAGGGTTGCGACAGCACATGCTAGACGCGGGCATGTGCTGA
194 CCCAGTCTAAGATCAGATA-GACCGAGGGTTACGGCAGCACATACTAGGCTCGGGCATGTGCTGG
* * ** *
20452824 TGCCACATTTTTCTTCG-CTGGGGCACCATC-TCCGGAGAACTTAACCTACGGCATTGGGGTTCT
258 TGCCACATTTTTCTTCGTC-GGGGCACCATCGT-CGGAGAACCTGACCGGCGGCATTGGGGTTCC
** * *
20452887 GGTGATCGA-GGGGCCGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTA
321 GACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
20452951 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTT
386 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAAATTT
*
20453016 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
451 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
* *
20453081 AAATCTTGTACACTTGGAGT-TTTTAACTGAATTTTTTTGTGCATGTGAACAAAAACACAAGGAT
516 AAA---TGTACA--AGGA-TATTTT-ACTGAA---TTTT-TG--TGTGAACAAAAATACAAGGAT
* * *
20453145 CACGTCTACCATGTTAGGGGCCAAAACTCCTTCC-ACAAAAATTTTTAAAAATCTCGAACCGTAA
568 CACGT-TACCA-GTT-GGGGACAAAA-TCCTTCCGA-AAAAATTTTAAAAAATCTCGAACCGCAA
* * ** *
20453209 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGACT
628 AAAGTTTGAAAAATCGTGAAATATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCT
* * * *
20453274 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCTTTGGCATGTAGAAATATGAAGATG
693 TAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
20453339 TGCCTATAACCCACATACCACCCTATCGATCCACGGCTT-GCATTTCCCGTCTCTTTGGCTGACG
758 TGCCTA-AACCCACCTACCACCCTATCGATCCACGGCTTCGCA--TCCCGTCTCTCTGGCCGGCG
* * *
20453403 TAGTGCCCGCCCGCCCACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATAA
820 TAGTGCCCGCCCGCCTACTCA-----T--TTT-GTCGGTTGGCTTAGGCATAC
** * * * ** * ** *
20453456 ATAGTTCATTCCCACTCTAAGATA-AGATTGGATTGACGGTTGCGACAGTAGGATCGGCACCACG
1 GGAGTTCATTCCCAGTCTAAGA-ACACATCGGACCGAGGGTTGCG-CAACAGGATCGGCAGCACG
* * * * *
20453520 TAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGT-CCCTCTGGCCGGCTGAGCGCCCGC
64 CAGAGGGGGACCGGCCT-ATCCCCAGCTTGCGCATCCC-TCCCCTCTGGCCGGCTGAGCGCCCAC
* * * *
20453584 ACGCTTGTTTCGTGTGTTGACTTAGGCATATGGAGTTGATTCCCAGTCTAAG-AT-C--AG---A
127 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
20453642 ---CC-G-----G---A-AT-----GAGGGTTACGGCAGCACATACTAGGCTCGGGCATGTGCTG
192 TTCCCAGTCTAAGATCAGATAGACCGAGGGTTACGGCAGCACATACTAGGCTCGGGCATGTGCTG
** * * * * *
20453689 GTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGAAAAACCTGACCGGCAGCATTGGGGTTCCG
257 GTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * * *
20453754 ACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTTGTACTTGGGCCTAA
322 ACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT-T
* *** ** *
20453819 AAATCATCCCCCTATCCCTCATCAAACCTTGAGAACTCATGCCCCCTTAAAGAGCATTTGAAATT
385 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAAATT
*
20453884 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAAAAATGGGGACACTTTTTTCAAATGGTCAC
450 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
**
20453949 AAAATCTTGTACACTTTGAGT-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
515 AAAA---TGTACA--AGGA-TATTTTA-CTGAA--TTTTTGTG--TG--AACAAAAATACAAGGA
*
20454013 TCACGTATACCAAGTTTGGGGACAAAATGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAA
567 TCACGT-TACC-AG-TTGGGGACAAAAT-CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAA
* *
20454078 AAAGTTTGAAAAATCGTGAAATATAGAAAATGAGTCGTCTTGCCGTGAAACTTGACGTGAAGGCT
628 AAAGTTTGAAAAATCGTGAAATATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCT
20454143 TAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
693 TAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* ** *
20454208 TGCCTAAACCCACCTACCACCCTATGGATGAACGGCTTCCGCATCCAGTCTCTCTGGCCGGCGTA
758 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-CGCATCCCGTCTCTCTGGCCGGCGTA
*
20454273 GTGCCCGCCCGCCTACTTATTTTGTCGGTTGGCTTAGGCATAC
822 GTGCCCGCCCGCCTACTCATTTTGTCGGTTGGCTTAGGCATAC
* ** * * *
20454316 GGAGTTCATTCCCAGTCTAAGAACACACCAAACCAAGGGTTGCAGCAACAGGATTGACAGCACGC
1 GGAGTTCATTCCCAGTCTAAGAACACATCGGACCGAGGGTTGC-GCAACAGGATCGGCAGCACGC
* * * *
20454381 AAAGGGGGACTCGGCCTATCCCCAACTTGGGCATCCCTCCCCTCTGGCCGGCTGAGCACCCACAC
65 AGAGGGGGAC-CGGCCTATCCCCAGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCACAC
* *
20454446 GCTCGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
129 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* ** * * *
20454511 CCCAGTCTAAGGTCAGACTAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGATGG
194 CCCAGTCTAAGATCAGA-TAGACCGAGGGTTACGGCAGCACATACTAGGCTCGGGCATGTGCTGG
* * *
20454576 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGGTGGCATTGGGGTTCCGA
258 TGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
* * *
20454641 CGATCTAGGGGGTCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
323 CGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
20454706 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATGCCCCCTTAAAGAGCATTTGAAATTTTA
388 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAAATTTTA
* *
20454771 CAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTTACAAA
453 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
20454836 A-ATACAAGG--A---T-C---A------TGT---C-----T------A-C-C---A--AGTTTG
518 ATGTACAAGGATATTTTACTGAATTTTTGTGTGAACAAAAATACAAGGATCACGTTACCAGTTGG
* *
20454864 GGACCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTGAAAAATCATG
583 GGA-C-AAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTGAAAAATCGTG
* * *
20454929 AAATATAGAAAACGAGTCGTCTTGTCGTGAAACTTCACATGAAGGCTTAAGGGACTATTGTATGA
646 AAATATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
20454994 ATATTCAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
711 ATATACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** * *
20455059 ACCCTATCGATCCACGATTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGGCCGCCT
776 ACCCTATCGATCCACGGCTT-CGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCT
* *
20455124 ACCCGCTCATTTCGTTGGTTGGCTTAGGCATAC
836 A----CTCATTTTGTCGGTTGGCTTAGGCATAC
* * * *
20455157 GGAGTTCATTCCCAGTCTAAGATCACATCGGACCGGGGGTTGCGGCACCAAGATCGGCAGCACGC
1 GGAGTTCATTCCCAGTCTAAGAACACATCGGACCGAGGGTTGC-GCAACAGGATCGGCAGCACGC
* * * * * * * *
20455222 AGAGAGGGACCTGACCGAACCCCAGCTTACGTAT-TCTGCCCCTCTGGCTGGCTGAGCGCCCACA
65 AGAGGGGGACC-GGCCTATCCCCAGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAGCGCCCACA
* * *
20455286 CACTCGTTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAATCATACGGAGTTCAT
128 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * *
20455351 TTCTAGTCTAACATCAGACCAGACCGAGGGTTACGGCAGCACATACTGGGCTCAGGCATATGCTG
193 TCCCAGTCTAAGATCAGA-TAGACCGAGGGTTACGGCAGCACATACTAGGCTCGGGCATGTGCTG
* * * * * *
20455416 GTGCCACATTTTTCTTCGTC---GAAGCATTGTCGGAGAACCTGACTGGCGGCATTAGGGTTTCG
257 GTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* ** * * *
20455478 ACGATCGGGGGGGGCTAAGGGGGTGTGCGCACCTAATGTGTGATGGGTGCTGGTACTTGGCCCTT
322 ACGATC-GAGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
20455543 ATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTC-TCACCCCCTTAAAGAGCATTTGAGAT
385 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAT-ACCCCCTTAAAGAGCATTTGAAAT
20455607 TTTACAGGTTTGCTGCCAGTA
449 TTTACAGGTTTGCTGCCAGTA
20455628 AAAAGTTTTG
Statistics
Matches: 1859, Mismatches: 247, Indels: 184
0.81 0.11 0.08
Matches are distributed among these distances:
832 6 0.00
833 216 0.12
834 5 0.00
835 1 0.00
836 1 0.00
837 13 0.01
838 40 0.02
839 6 0.00
840 126 0.07
841 260 0.14
842 1 0.00
848 1 0.00
853 1 0.00
858 1 0.00
859 2 0.00
860 159 0.09
861 10 0.01
863 1 0.00
864 2 0.00
865 2 0.00
866 90 0.05
867 12 0.01
868 114 0.06
869 339 0.18
870 9 0.00
871 2 0.00
872 2 0.00
873 1 0.00
876 2 0.00
878 1 0.00
879 1 0.00
880 5 0.00
881 2 0.00
882 2 0.00
884 125 0.07
885 44 0.02
886 105 0.06
888 2 0.00
890 1 0.00
891 7 0.00
892 139 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (864 bp):
GGAGTTCATTCCCAGTCTAAGAACACATCGGACCGAGGGTTGCGCAACAGGATCGGCAGCACGCA
GAGGGGGACCGGCCTATCCCCAGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCACACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAGATAGACCGAGGGTTACGGCAGCACATACTAGGCTCGGGCATGTGCTGGTGC
CACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
TCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAAATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATG
TACAAGGATATTTTACTGAATTTTTGTGTGAACAAAAATACAAGGATCACGTTACCAGTTGGGGA
CAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTGAAAAATCGTGAAATA
TAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATA
CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTACTCATTTTG
TCGGTTGGCTTAGGCATAC
Found at i:20455347 original size:26 final size:26
Alignment explanation
Indices: 20455311--20455361 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20455301 TTGAATTAGG
20455311 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
* *
20455337 CATACGGAGTTCATTTCTAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
20455362 CATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:20457437 original size:718 final size:718
Alignment explanation
Indices: 20456052--20457537 Score: 2098
Period size: 718 Copynumber: 2.1 Consensus size: 718
20456042 CCTAGTCTAA
* * * * * *
20456052 GCATACGAAGTTCATTCCCAGTCTAAGATC-AAACTAGACCGAGGGTTGCGGTAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGTGGCAGCACATGCTAG
* * * * * * *
20456116 GCTTGGGCATGTGCTGGTATCGCATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCGTCGAAG
65 GCTCGGGCATGTGATGGTACCACATTTTTCGTCACCGGGGCACCATCGCCAAAGCATCATCGAAG
* **
20456181 AACTTGACCGACGGCATTGGGGTTCCGACGATCGGGCGGGCCGGGGGGTGTGCGCACATGATGTA
130 AACCTGACCGACGGCATTAAGGTTCCGACGATCGGGCGGGCCGGGGGGTGTGCGCACATGATGTA
* * *
20456246 CGATGGGTGCTGGTACTTAGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCAT
195 CGATGGGTGCTGGTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
20456311 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTTTCGAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTCGAAA
*
20456376 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTG
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTG
* *
20456441 TGCATGCCAACAAAAATACAACGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTACGAAAAA
390 TGCATGCCAAAAAAAATACAACGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTACAAAAAA
* ** * * *
20456506 ATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCTTGAAAAATAGAAACTGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCACAAAAAGGATCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTT
* *
20456571 GGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
20456636 TTGGCTTGCAAAAATATGAAGATGTGAGTAAACCCACCTACCACCTTATCGATCCACGGCTTGCG
585 TTGGCATGCAAAAATATGAAGATGTGACTAAACCCACCAACCACCGTATCGATCCACGGCTTGCG
* * * * *
20456701 TATCCCGTCTCCCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCACGCTCATTTCGTCGGTTGGC
650 CATCCCATCTCCCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCACGCTCATTTCATCGGTTGGA
20456766 TTAG
715 TTAG
* *
20456770 GCATACGGAGTTCAATCCCAGTCTAAGATCGGACCGAACCGACGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCACATGCTAGG
* * ** * *
20456835 CTCGGGTATGTGATGGTGCCACATTTTTCGTCGTCGGGGCACCATCGCCAAAGTATCATCGGAGA
66 CTCGGGCATGTGATGGTACCACATTTTTCGTCACCGGGGCACCATCGCCAAAGCATCATCGAAGA
* * ** * *
20456900 ACCTGACCGGCGGCATTAATGTTCCGGTGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTAAGGTTCCGACGATCGGGCGGGCCG-GGGGGTGTGCGCACATGATGTA
* * * *
20456965 CGATTGGTTCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
20457030 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCT-GAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTCGAAA
* *
20457093 TTGGGACA-TCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTT
325 TGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTT
* * ** * * *
20457157 TTTGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTTCAAAA
388 TGTGCATGCCAAAAAAAATACAACGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTACAAAA
* * * *
20457222 AAATTTTAAAAAATTTTGAACCGCAAAAAGGATCCAAAATCGTGAAAAATAAAAAATGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCACAAAAAGGATCAAAAATCGTGAAAAATAAAAAATGAGTCGTC
* *
20457287 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAATATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
20457352 CATTGGCATGCAGAAATATGGAGATGTGCCTAAACCCACCAACCACCGTATCGGTCCATGGCTTG
583 CATTGGCATGCAAAAATATGAAGATGTGACTAAACCCACCAACCACCGTATCGATCCACGGCTTG
* * * *
20457417 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
648 CGCATCCCATCTCCCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCACGCTCATTTCATCGGTTG
20457482 GATTAG
713 GATTAG
* * * * *
20457488 GCATACAGAGTTGATTCCCATTCTAAGATTGGACTGAACCGAGGGTTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTG
20457538 AGAGTAGGAT
Statistics
Matches: 672, Mismatches: 92, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
716 1 0.00
717 55 0.08
718 533 0.79
719 83 0.12
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCACATGCTAGG
CTCGGGCATGTGATGGTACCACATTTTTCGTCACCGGGGCACCATCGCCAAAGCATCATCGAAGA
ACCTGACCGACGGCATTAAGGTTCCGACGATCGGGCGGGCCGGGGGGTGTGCGCACATGATGTAC
GATGGGTGCTGGTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTCGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGT
GCATGCCAAAAAAAATACAACGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTACAAAAAAA
TTTTAAAAAATCTCGAACCACAAAAAGGATCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAAAAATATGAAGATGTGACTAAACCCACCAACCACCGTATCGATCCACGGCTTGCGC
ATCCCATCTCCCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCACGCTCATTTCATCGGTTGGAT
TAG
Found at i:20457683 original size:26 final size:26
Alignment explanation
Indices: 20457647--20457699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20457637 GTTGACTTAC
*
20457647 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20457673 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20457699 G
1 G
20457700 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20458575 original size:26 final size:26
Alignment explanation
Indices: 20458539--20458590 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20458529 TTGACTTACA
*
20458539 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
* *
20458565 CATACAGAGTTCATTCCTAGTTTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
20458591 ATTAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:20459478 original size:26 final size:26
Alignment explanation
Indices: 20459442--20459492 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20459432 TGACTTACGC
*
20459442 ATACGGAGTTCATTCTCAATCTAAGT
1 ATACGGAGTTCATTCCCAATCTAAGT
* *
20459468 ATACGGAGTTCTTTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
20459493 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Done.