Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 118 of 195
Found at i:20459671 original size:902 final size:893
Alignment explanation
Indices: 20456770--20459698 Score: 3888
Period size: 902 Copynumber: 3.3 Consensus size: 893
20456760 GTTGGCTTAG
* * * *
20456770 GCATACGGAGTTCAATCCCAGTCTAAGATCGGACCGAACCGACGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * **
20456835 CTCGGGTATGTGATGGTGCCACATTTTTCGTCGTCGGGGCACCATCGCCAAAGTATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* ** *
20456900 ACCTGACCGGCGGCATTAATGTTCCGGTGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
20456965 CGATTGGTTCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
20457030 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
20457094 TGGGACATCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTT
326 GGGGACA-CTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * *
20457159 TGCATGCCAAA-AAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTTCAAAAA
389 TGCATG-CAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAA
* * * * *
20457223 AATTTTAAAAAATTTTGAACCGCAAAAAGGATCCAAAATCGTGAAAAATAAAAAATGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCACAAAAAGGATCAAAAATCATGAAAAATAAAAAATGAGTCGTCT
* *
20457288 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAATATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAA-GGA-CATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
20457353 ATTGGCATGCAGAAATATGGAGATGTGCCTAAACCCACCA-ACCACCGTATCGGTCCATGGCTTG
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA-CATACCACCCTATCGAT-CATGGCTTG
* * ** *
20457417 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
643 CGCATCCCGTCTCTCTGGCCGG-GCAGTGCCCGTCCGCCCG--CG-CCGCTCGTTTCGTCGGTTG
* * * * * *
20457482 GATTAGGCATACAGAGTTGATTCCCATTCTAAGATTGGACTGAACCGAGGGTTGTGAG-AGTAGG
704 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACAG-ACTGAGGGTTG-GAGCAGCAGG
* * * * *
20457546 ATCGGCAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
767 ATCGGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGC
* *
20457611 TGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTTTAA
832 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
20457673 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACTGATGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
20457738 CTC-AGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAAGCATCGCCGAA
66 CTCGA-GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAG-AGCATCGCCGGA
* *
20457801 GAACCTGACCGACGACATTGGGGTTCCGGTGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
20457864 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
20457929 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
20457994 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTCTCAGCTGAATTTTTT
324 ATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
20458059 TGTGCATGCCAACAAAAATACAAGGGTCACATCTACAAAGTTTGGGGCCAAAACTCCTTTCCAAA
388 T-TGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAA
* * * *
20458124 GAATTTTAAAAAATC-CTGAACCACAGAAAGGATCAAAAATCATGAAAAATAAAAAACGAATCGT
451 AAATTTTAAAAAATCTC-GAACCACAAAAAGGATCAAAAATCATGAAAAATAAAAAATGAGTCGT
20458188 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGAAGCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGG-A-CATTGTATGAATTTACAAGCCATAAAAATG
* * * *
20458253 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACTTATCGGTTCATGGCTT
578 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATC-GATCATGGCTT
*
20458318 GCGCATCCCGTCTCTCTGGCC-GGC-GT---AGT--GCCCGC-CCGCTCGTTTCGTCGGTTGGCT
642 GCGCATCCCGTCTCTCTGGCCGGGCAGTGCCCGTCCGCCCGCGCCGCTCGTTTCGTCGGTTGGCT
* ** * * *
20458375 TAGGCATACGGAGTTCATTCCTTGTCTAAGATCGGACAGGATTGAGGGTTGGAACAGCAGGATCG
707 TAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACA-GACTGAGGGTTGGAGCAGCAGGATCG
* * *
20458440 ACAGCACGTAGAGGGGGACCTTGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGTCGGCTGA
771 GCAGCACGTAGAGGGGGACC-CGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGA
*
20458505 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTACACATACGGAGTTCATTCCCAGTCTAA
835 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
* * * **
20458564 GCATACAGAGTTCATTCCTAGTTTAAGATTAGACCGAACC-AGGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGA-GGGTTGCGGCAGCACATGCTGG
* * * * * * *
20458628 GATCGGGCATGTGCTAGTGTCACATTTTTCTTCATCGGGGCACCATCACCGGAGAATCGCCGGAG
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCGGAG
* * * *
20458693 AACCTGATCGGCAGCATTAGGGTTCCGGTGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
20458758 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCACCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
20458823 TACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20458888 TGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
20458953 TGCATGCAAACAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCGAAACTCCTTCCGAAAAA
389 TGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * ** ** * *
20459018 ATTGT-AAAAATCTCGAATCTTAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
453 ATTTTAAAAAATCTCGAACCACAAAAAGGATCAAAAATCATGAAAAATAAAAAATGAGTCGTCTT
* * * * *
20459082 GCCAGGAAACTTCACATGAAGGCTTAACGGACTGTTGTATGAATTTAGATGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAA-GGAC-ATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
20459147 TTGGTATGCAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCAACGGCTTGCG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATC-ATGGCTTGCG
* *
20459212 CATCCCGTCTCTCTGGCCGGTGCAGTGCCCGTCCGCCCGCATGCACGCTAGTTTCGTCAGTTGGC
645 CATCCCGTCTCTCTGGCCGG-GCAGTGCCCGTCCGCCCGC--GC-CGCTCGTTTCGTCGGTTGGC
*
20459277 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAAGGTTGCG-GCAGCAGGAT
706 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGA-CAGACTGAGGGTTG-GAGCAGCAGGAT
* * * * * *
20459341 CGGTAGCACCTAGAGGGGGACCCGACCAATCCTCGGCTTGTGCATCCCGCCCTTTTGGTCGGCTG
769 CGGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTG
* * *
20459406 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCTCAATCTAA
834 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
* * *
20459466 GTATACGGAGTTCTTTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTGCGGCAGAACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * **
20459530 GCTCGAGCATGTGCTGGTGCCATATTTTTCTTC-GCTGAGGCACCATCGCCAGAGCATCGTTGGA
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATC-GGGGCACCATCGCCAGAGCATCGCCGGA
* * * * * * * *
20459594 GAACCTGGCCGATGGCATTGGGGTT-TGAGCGATCGGAGGGACCGGGGGGGTGTGCGAACATGAT
129 GAACCTGACCGACGGCATTAGGGTTCCG-GTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
20459658 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
20459699 CTGGCCGACT
Statistics
Matches: 1772, Mismatches: 212, Indels: 85
0.86 0.10 0.04
Matches are distributed among these distances:
889 2 0.00
890 92 0.05
891 405 0.23
892 74 0.04
893 204 0.12
894 7 0.00
897 2 0.00
899 8 0.00
900 1 0.00
901 101 0.06
902 647 0.37
903 226 0.13
904 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCGGAGA
ACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTG
CATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATT
TTAAAAAATCTCGAACCACAAAAAGGATCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCATGGCTTGCGCATCCC
GTCTCTCTGGCCGGGCAGTGCCCGTCCGCCCGCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGATTGGACAGACTGAGGGTTGGAGCAGCAGGATCGGCAGCACGTA
GAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
Found at i:20460649 original size:26 final size:26
Alignment explanation
Indices: 20460615--20460665 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20460605 TGACATTGGT
20460615 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
20460641 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
20460666 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:20460940 original size:26 final size:26
Alignment explanation
Indices: 20460911--20460962 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20460901 CGATCTGATT
*
20460911 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGCGAATGAACTCCGTATGC
* *
20460937 TTAGATTGCGAATGAACTTCGTATGC
1 TTAGACTGCGAATGAACTCCGTATGC
20460963 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCGTATGC
Found at i:20462741 original size:26 final size:26
Alignment explanation
Indices: 20462712--20462763 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20462702 TGATCCGATT
20462712 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
20462738 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20462764 CTATGTCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20463633 original size:26 final size:26
Alignment explanation
Indices: 20463597--20463649 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20463587 TCAGTCTGAT
20463597 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
20463623 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACACCATATG
20463649 C
1 C
20463650 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:20464302 original size:906 final size:901
Alignment explanation
Indices: 20460870--20464530 Score: 5008
Period size: 903 Copynumber: 4.1 Consensus size: 901
20460860 TTGGCCCTCT
* ** * * * *
20460870 AGCCTAGCATGTGCTGTCGTAACCCTCGGTCCGATCTGATTTTAGACTGGGAATGAACTCCGTAT
1 AGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
20460935 GCTTAGATTGCGAATGAACT-TCGTATGCCTAAGTC-AACCAACGAAACGAGTGTGCGGACGCTC
66 GCTTAGACTGGGAATGAACTCT-ATATGCCTAAGTCAAACC-ACGAAACGAGCGTGCGGGCGCTC
* * * * *
20460998 AGCCGACCAGAGGGGTGGGATACGCAA-CCGGGGATCGATCGGGTCCCCCTTTACGTGCTGCCGA
129 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
* * * * * * * * *
20461062 ACCTGCTACCACAACCCTC-GATCTGATCTGATCTTAGACCGAGAATGAACTCTGTATGCGTAAG
194 TCCTGCTGCCACAACCCTCGGA-CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
20461126 CCAACCGACGAAACGAGCGGGCGGGAGGACGAGCTGGCACCATGCCGGCCAGAGAGACGGGATGC
258 CCAACCGACGAAACGAGCAGGCGGGCGGACGGGCGGGCACCACGCCGGCCAGAGAGACGGGATGC
**
20461191 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCCAAT
323 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAT
* *
20461256 GCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACATGAAGTTTCACGGCA
388 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCACAGCA
* * *
20461321 AGACGACTCGTTTTCTCTTTTTCATGATTTTCAAAACTTTTTACAGTTCGAGATTTTTTAAAATT
453 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* *
20461386 TTTTCGGAAGGATTTTTGG-CCCAAACTTGGTAGATATGATCCTTGTATTTTTGTTGGCATGCAC
518 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
* *
20461450 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCA
583 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* ** *
20461515 TTTAAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAATGGGTA
648 TTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
20461580 TGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCTAATATAAGGGCCAAGTCCCAGCACCCATCTC
713 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
20461645 ACATCATGTGCGCACACCCCCCCGGGCCCCCCGGTGGCCGGAACCCCAATGCCGCCGGTCAGCTT
778 ACATCATGTGCGCACA--CCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
** * **
20461710 CTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCG
840 CTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCG
* * * *
20461772 ATCCCAGCATGTGTTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
1 AGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
20461837 GCTTAGACTGGGAATGAACTCCATATACGTAAGTCAACCCACGAAACGAGCGTGTGGGCTCTCAA
66 GCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
20461902 CCAGCCAGAGGGGCGGGATGCGTAAGCCGGGGATC-AGTCGGCTACCCCTCTGCGTGCTGCTGAT
131 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * *
20461966 CCTGTTGCCACAACCCTTGGTCCTGTCCGATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCC
195 CCTGCTGCCACAACCCTCGGACCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
20462031 GACCGACAAAACGAGCGGGCGGG-TGACTGGACGGACACTACGCCGGCCAGAGAGACGGGATGCG
260 AACCGACGAAACGAGCAGGCGGGCGGAC-GGGCGGGCACCACGCCGGCCAGAGAGACGGGATGCG
* * *
20462095 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGAAATCTTCATATTTCTACGTGCCAATG
324 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATG
* **
20462160 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACATGAAGTTTCATGGCAA
389 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCACAGCAA
* ** * * * * *
20462225 GACGATTCGTGTTT-TATTTTTCACGATTTT-TGATCCTTTTGCGGTTTGGGATTTTTTAAAATT
454 GACGACTCGT-TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * * *
20462288 TTTTCGAAAGGAGTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
518 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
20462353 AAAAAAAGTCATCTAAAAACTCGAAGTGTAGAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCA
583 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
20462418 TTTGAA-ACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
648 TTT-AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
20462482 GTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
712 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
20462547 CACATCATGTGCGGACACCCCCCG-CCCCCGATCGCCGGAACCCTAATGCCACCGGTCAGGTTCT
777 CACATCATGTGCGCACACCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
20462611 CC-AGCGATGCTTCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCG
842 CCGA-CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCG
* * * *
20462671 AGCCTAGCATGTGCTACCGCAACCCTCGG-TCTGATCCGATTTTAGACTGGGAATGAACTCCGTA
1 AGCCCAGCATGTGCTACCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * * *
20462735 TGCTTAGACTGGGAATGAACTCTGTATGCCTATGTCGACCCATGAAACGAGTGTGCGGGCGCTCA
65 TGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCA
* * * *
20462800 GCTGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCAAT
130 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGAT
*** *
20462865 CCTGCTGCCACAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
195 CCTGCTGCCACAACCCTCGGACCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
20462930 AATCGACG--A--A--A------C-GA---GCGGGCACCATGCCGGCCAGAGAGACGGGATGCGC
260 AACCGACGAAACGAGCAGGCGGGCGGACGGGCGGGCACCACGCCGGCCAGAGAGACGGGATGCGC
* * *
20462979 AAGCCGTGGATCGATAGGGTGGTAGGTGGGGTTAGGTATATCTTCATATTTCTATGTGCCAATGC
325 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
*
20463044 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACAGCAAG
390 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCACAGCAAG
* ** *
20463109 ATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTT
455 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * ** * *
20463174 TTTGGAAGGGGTTTTGACCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATGTACAA
520 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20463239 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
585 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
20463304 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
650 TAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
20463369 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGAACCAGCACCCATCACAC
715 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
20463434 ATCATGTGCGCACACCCCCTGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGT-AGGGTTCTC
780 ATCATGTGCGCACACCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA-GGTTCTC
* * * *
20463498 TGACGAGGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGGCCG
843 CGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCG
* * * * * *
20463557 AGCCCAGCATTTGCTACCGCAATCCTTGGTTCAGTCTGATCTTAGACTGGGAATGAACACCATAT
1 AGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
*
20463622 GCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAAACCACGAAACGAACGTGCGGGCGCTCAG
66 GCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
20463687 CCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTACTACTGATC
131 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
* *
20463752 CTGCTG-CAGCAACCCTCAGACCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
196 CTGCTGCCA-CAACCCTCGGACCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
20463816 AACTGACGGAAGGAGCAGGCGGGCGGACGGGCGGGCGAACACTACGTCGGCTAGAGAGACAGGAT
260 AACCGACGAAACGAGCAGGCGGGCGGACGGGCGGGC--AC-C-ACGCCGGCCAGAGAGACGGGAT
* *
20463881 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCA
321 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCA
* *
20463946 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAG
386 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCACAG
* * *
20464011 CAAGACGACTCGTTTTCGATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAA
451 CAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAA
* * * *
20464076 TTTTTTCGGAGGGATTTTTGGCCCCAAACTTGGTATACATGATCCTTGTATTTTTGTTGGCATGT
516 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
* *
20464141 ACAAAAAAATTCAGCTAAAAAATCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
581 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
20464206 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGG
646 CATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
20464271 TGTGAGTTTTGGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATC
711 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
20464336 GCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGTCGTCGGTCATGT
776 GCACATCATGTGCGCACA-CCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
* **
20464401 TCTCCGACGATGCTCCGACGATGGCGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCG
839 TCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCG
* * * *
20464464 AGCCCAGCATGTGCTGCCGTAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
1 AGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
20464529 GC
66 GC
20464531 CTAAGCCACT
Statistics
Matches: 2424, Mismatches: 290, Indels: 85
0.87 0.10 0.03
Matches are distributed among these distances:
882 3 0.00
883 177 0.07
884 284 0.12
885 4 0.00
886 315 0.13
887 5 0.00
888 1 0.00
890 1 0.00
892 1 0.00
895 1 0.00
897 1 0.00
898 2 0.00
899 314 0.13
900 2 0.00
901 5 0.00
902 175 0.07
903 513 0.21
904 8 0.00
905 1 0.00
906 463 0.19
907 147 0.06
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
AGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
CTGCTGCCACAACCCTCGGACCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCAGGCGGGCGGACGGGCGGGCACCACGCCGGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCACAGCAAGA
CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCG
Found at i:20464628 original size:26 final size:26
Alignment explanation
Indices: 20464577--20464628 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20464567 CCAGTCTGAT
*
20464577 CTTAGACTGCGAACGAACTCCGTATG
1 CTTAGACTGCGAACGAACTCCATATG
* * *
20464603 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGCGAACGAACTCCATATG
20464629 TCTAAGCCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGCGAACGAACTCCATATG
Found at i:20466197 original size:26 final size:26
Alignment explanation
Indices: 20466161--20466213 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20466151 CCGGTCTGAT
20466161 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20466187 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20466213 C
1 C
20466214 CTAAGCCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20466303 original size:26 final size:26
Alignment explanation
Indices: 20466260--20466311 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20466250 CCAGTCTGAT
20466260 CTTAGACTACGAAGGAACTCCGTATG
1 CTTAGACTACGAAGGAACTCCGTATG
** * *
20466286 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTACGAAGGAACTCCGTATG
20466312 TCTAAGCCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTACGAAGGAACTCCGTATG
Found at i:20466311 original size:99 final size:99
Alignment explanation
Indices: 20466139--20466320 Score: 292
Period size: 99 Copynumber: 1.8 Consensus size: 99
20466129 ATGTGCCGTC
* ** *
20466139 GTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
1 GTAACCCTCGATCCAGTCTGATCTTAGACTACGAAGGAACTCCATATGCTTAGACTGGGAATGAA
20466204 CTCCGTATGCCTAAGCCACTTGAAAAAAGTGTCT
66 CTCCGTATGCCTAAGCCACTTGAAAAAAGTGTCT
* *
20466238 GTAACCCTCGGTCCAGTCTGATCTTAGACTACGAAGGAACTCCGTATGCTTAGACTGGGAATGAA
1 GTAACCCTCGATCCAGTCTGATCTTAGACTACGAAGGAACTCCATATGCTTAGACTGGGAATGAA
* *
20466303 CTCTGTATGTCTAAGCCA
66 CTCCGTATGCCTAAGCCA
20466321 ATCGATGAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
99 75 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (99 bp):
GTAACCCTCGATCCAGTCTGATCTTAGACTACGAAGGAACTCCATATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCACTTGAAAAAAGTGTCT
Found at i:20466626 original size:842 final size:846
Alignment explanation
Indices: 20464504--20471329 Score: 5848
Period size: 842 Copynumber: 7.8 Consensus size: 846
20464494 TCGGTCTGAT
* * ** * * * *
20464504 CTTAGACTGGGAATGAACTCCATATGCCTAAG-C-CACTTGAAAAAAGTGTCCGTAACCCTCGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCACCCACGAAAAGAGCGTGCGTAGCCCTCGGT
* * * ** *
20464567 CCAGTCTGATCTTAGACTG-CGAACGAACTCCGTATGCT-TAGACTGGGAATGAACTCTATATGT
66 CCAGGCGGATCTAAGAC-GACGAA-GGCCTCCCTATGCTGTAGACTGGGAATGAACTCTATATGT
* * * *
20464630 CTAAGCCAACCGATGAAATGAGCGAGC--GG-GCGAGCAGCG-GGACTACGCCAGCCAGAGAGAC
129 CTAAGCCAATCGATGAAATGATCGAGCAAGGCACGAGCAGCGAGCACTACGCCAGCCAGAGAGAC
* * *
20464691 GGGATGCGTAAGCCGAGGATGGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
194 GGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
20464756 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
259 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* **
20464821 CATGGCAAGACGACTCGATTTTCTATTTTTCATGATTTTCAAAAAATTTTGCGGTTCAGGATTTT
324 CATGGCAAGACGACTCG-TTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTT
* * * * *
20464886 TTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAAATTGGTAGACGTGATCCTTGCATTTTTGCTG
388 TTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
20464951 GCATGCACAAAAAAAGTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
453 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
20465016 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
518 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* ***
20465081 AGGGGGTGTGAGTTCTCGACGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAATG
583 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
20465146 CCCATCGCACATCATGTGCGCACACTCCCCTGGCCCCCCCAATCGTCGGAACCCCAATGCTGCCA
648 CCCATCGCACATCATGTGCGCACAC-CCCCCGG-CCCCTCGATCGTCGGAACCCCAATGCCGCCG
* * * * *
20465211 GTCAGGTTC-CCCAGTGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAACGCT-GCACCAGCAC
711 GTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG-TGGCACCAGCAC
* * * * * **
20465274 ATGTCCG-GTCC-G-ATCTTAGACTG--GTAA---T-GAACTCC-GTCTG-CCTAAGTCAACCCA
774 ATGCCCGAGCCCAGCAT-GT-G-CTGTCGTAACCCTCG-A-TCCGGTCTGATCTTAG---A-CTG
* ** * ***
20465328 CGAAACAAGCGTGCGGGCG
830 GGAATGAA-C-TCCGTATG
* ** ** * * * * ** ** **
20465347 CTCA-A-TCGGCCA-GAGGTACGGGATGCGC-AAG----CCAGGGATTGATAG-G-GTCCCCCTC
1 CTTAGACT-GGGAATGAACT-CCGTATGC-CTAAGTCACCCACGAAAAGAGCGTGCGTAGCCCTC
* * *** *
20465402 TGTGTGCTA--CCGATCCTGCTATC-AC-AA-CCCTCGGTTCAGTCTGAT-CT-TAGACT-GGAA
63 -G-GT-CCAGGCGGAT-CTAAGA-CGACGAAGGCCTC----C---CT-ATGCTGTAGACTGGGAA
* * * * * * ** * *
20465459 TTAACTCCATATGCCTAAGCCAACCGATGAAACGAGCG-GGTAGG-GCG-G--GCGGGCACTACG
115 TGAACTCTATATGTCTAAGCCAATCGATGAAATGATCGAGCAAGGCACGAGCAGCGAGCACTACG
* * ** * * * *
20465519 -CTGTCCAGAGAGACGGGATGAGCAAGTTGTGAATCAATAGGGTGGTAGGTGTGTTTAGGCACAT
180 CCAG-CCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
20465583 CTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTACATTCATACAGTGGTCCCTTAAGC
244 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
20465648 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
309 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTG
* * ** *
20465713 CGGTTCAGG-TGTTTTTAAAATTTTTTCGAAAGGATTTTTAGCTTCAAACCTGGTAGACGTGATC
374 CGGTTCAGGAT-TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
20465777 CTTGTATTTTTTTTGGCATGCACAAAGAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
438 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
20465842 ACCATTTAAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
503 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
20465907 CTCAAATGCTCTTTAAGGGGGTGTGAGTTTTGGAGGTTTGATAAGGGATAGGGGGCCAATATAAG
568 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
20465972 GGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCACCTCGATCGCCGGAA
633 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCTCGATCGTCGGAA
* * * * *
20466037 CCCCAATGTCGTCGGTCAGGTTCTCCGACGATCCTCCGACGATGGTGCCCCGACGAAGAGAAATG
697 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG
*
20466102 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCCGTCGTAACCCTCGATCCGGTCTGATCTTAGA
762 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGA
*
20466167 CTGGGAATGAACTCCATATG
827 CTGGGAATGAACTCCGTATG
* ** * * *
20466187 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-C-CACTTGAAAAAAGTGT-CTGTAACCCTCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCACCCACGAAAAGAGCGTGC-GTAGCCCTCGG
* * * * * * *
20466249 TCCAGTCTGATCTTAGACTACGAAGGAACTCCGTATGCT-TAGACTGGGAATGAACTCTGTATGT
65 TCCAGGCGGATCTAAGACGACGAAGG-CCTCCCTATGCTGTAGACTGGGAATGAACTCTATATGT
*
20466313 CTAAGCCAATCGATGAAATGATCGAGC-AGGCA-G-GCAGCGAGCACTATGCCAGCCAGAGAGAC
129 CTAAGCCAATCGATGAAATGATCGAGCAAGGCACGAGCAGCGAGCACTACGCCAGCCAGAGAGAC
* * * *
20466375 GGGCTGCGCAAGCCGAGGATGGATAGGGTGGCAGGTGGGTTTAGGCGCATCTTCATATTTCTGCA
194 GGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* * *
20466440 TGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGATCCCTTAAGCATTCACGTGAAGTTT
259 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
20466505 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTT
324 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTT
* *
20466570 TAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
389 TAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
20466635 CATGCAAAAAAAAAGTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
454 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
** *
20466700 GTCCCCATTTCAGACACTTTAATGGCTACTGTTAGCAAACCTGTAAAATCTTAAATGCTCTTTAA
519 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
20466765 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAT
584 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * ** * *
20466830 CCATCGCACATCATGCGTGCACACCCCCCGGCCCACCCGATCACCGGAAGCCCAATGCCGCCCGT
649 CCATCGCACATCATGTGCGCACACCCCCCGGCCC-CTCGATCGTCGGAACCCCAATGCCGCCGGT
* * * * ** *
20466895 CAGGTTCTCTGGCGATGGTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACTAGCACATGC
713 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
* * * * * * * *
20466960 CTGAGCCTAGCATGTGCTGTCGCAACCCTCGGTTCGGTCCGATGTTAGACTGGGAATGAACTTCG
778 CCGAGCCCAGCATGTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCG
20467025 TATG
843 TATG
* * *
20467029 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG-GGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-ACCCACGAAAAGAGCGTGCGTAGCCCTC-G
* * * * ** *
20467093 CCGGCCAGAAGGGCGGGATGCGCAAGCCAGGGGTCGCCTGGGTCCCCCTCTACGTGCTGTCA-AT
64 --GTCC---A-GGC-GGAT-C-TAAG--A--CGACG--AAGG-CCTCC-CTA--TGCTGT-AGA-
** ** * * * * * *
20467157 CCTACTG-CCGCAACCCT-TAGTCCAGTCTGA-CCTTAGACTGGGAACGAACTTCGTATGCCTAA
108 -CT-GGGAATG-AACTCTATA-T---GTCTAAGCC--A-A-T-CG-ATGAA-AT-G-AT--C-GA
* * * *
20467219 GCCAACTGACGAAACGAGTGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
154 G-CAA--G--G-CACGA---G-C-AGCGAGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCC
* * *
20467284 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTTTGCATGCCAATGCCATTT
208 GAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
20467349 TTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGAC
273 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
20467414 TCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGTGGTTC-GAGATTTTTTCAAATTATTTCG
338 TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCG
* * * ** * * *
20467478 GAAGGATTTTTTGCCCTGAACTTCGTAGATGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAA
402 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
20467543 A-TAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTG-CCCCATTTCAA
467 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
20467606 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGTGTGTGAGTT
532 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
20467671 CTCAAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCACATCA
597 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
20467736 TGTGCGCACACCCCCCGGTCCCCCCGATCGTTGGAACCTCAATGCCGCCGGTCAAGTTCTCCGAC
662 TGTGCGCACACCCCCCGG-CCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * * * * *
20467801 GACGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGAGACACCAGCACATGTCGGAGCCCAGCAT
726 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
20467866 GTGCTGTCGTAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
791 GTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20467922 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCG-GGCGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-ACCCACGAAAAGAGCGTGCGTAGC---C-C
* * * * *
20467986 TCGG-CCAGAGGGGCGGGATGTGCAAGCCGAGGATTGGCCGGGTCCCCCTCTG-TGT-G-CTGCG
61 TCGGTCC--A--GGC-GGATCT--AAGACGACGA-AGGCC---T--CCCTATGCTGTAGACTG-G
* * * * * * *
20468047 GATCCTGCTACCGCAACACTCGATCT-GGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTA
112 GA--ATG--AACTCTATA-T-G-TCTAAG-CCAATC---GA-TGA-AATG-A-T-CG-A-G-C-A
* ** *
20468111 AGCCAACCGATGAAACGAGCGGGCGAGCGGGCGGGCACTACGCTGGCTAGAGAGACGGGATGCGC
157 AGGC-A-CGA-G---C-A----GCGA--------GCACTACGCCAGCCAGAGAGACGGGATGCGC
* * **
20468176 AAGACGTGGATCGATAGGGTGGTAGGCAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
203 AAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
20468241 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
268 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * * * *
20468306 ACGACTTATTTTATATTTTTCACGGTTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
333 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
* * * *
20468371 TTCGGAAGGAGTTTTAGCCCCAAACATGGTAGATGTGATCCTTGTATTTTT-TTGGCATGCACAA
398 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
** * *
20468435 AAAAATTCAGCTAGGAACTCGGAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
463 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
20468500 TCAGACACTTTCATTGCTACTGGCAGCAAAACTGTAAAATCACAAATGCTCTTTAAGGGGGTGTG
528 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
20468565 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCAC
593 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
20468629 ATCATTTGCGCACA-CCCCCGACCCCCCGATCGTCGGAACCTCAATGCTGCCGGTCAGGTTCTCC
658 ATCATGTGCGCACACCCCCCGGCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * ** ** *
20468693 GGCGATGCTCCGGCGATGCTGCCCCGATGAAGAAAAATACGGCACCTTCACATGCTCGAGCCCAG
723 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
* * * * *
20468758 TATGTGCTGTCGTAACCCTCGGTCTGGT-TCGATTTTAGACTGGGAATGAACTCCATATG
788 CATGTGCTGTCGTAACCCTCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20468817 CTTAGATTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTACGT-GCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-ACCCACGAAAAGAGCGTGCGTAGC-C-C--
* * ** * * * *
20468881 TCGG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTG-TGT-G-CTGCC
61 TCGGTCC--A--GGC-GGAT-C-TAAGACGACGA-AGG-C----CTCCCTATGCTGTAGACTG-G
** * * * * * *
20468942 G-ATGTTGCTACCACAACCCTCAGCCCAATCCAATCTTGGACTGGGAATGAACTCCGTATGCCTA
112 GAATG-AACT-CTA-TA---T--GTCTAAGCCAATC---GA-T-GAAATG-A-T-CG-A-G-C-A
* * ** **
20469006 AGCCAACTAACGAAACGAGCGGGCGGGCAGGCACTAAACTGGCCAGAGAGACGGGATGCGCAAGC
157 AG---------G-CACGAGC-AGC--G-A-GCACTACGCCAGCCAGAGAGACGGGATGCGCAAGC
* * *
20469071 GGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATT
207 CGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
20469136 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTT-ATGGCAAGACG
272 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACG
* * *
20469200 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAAATTTTTT
336 ACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTT-AAAATTTTTT
* **
20469265 -GAAAGGATTTTTGGCCCCAAACTTGGTAGGTGTGATCCTTGTATTTCTT-TTGGCATGCACAAA
400 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCACAAA
* *
20469328 AAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTT
464 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
20469393 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
529 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
20469458 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
594 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * ** *
20469523 TCATGTGCGCACACCCCCAGTCCCCTCGATCGTCGAAACCACAATGCCATCGGTCAGGTTCTCCA
659 TCATGTGCGCACACCCCCCGGCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
20469588 ACGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAAAGTGGCACCAGCACATGTCGGAGCCCAAC
724 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* ** *
20469653 ATGTGCTGCCGTAACCCTC-AGTCTAGTCTGATCTTAGACTGGGAATGAACTCTGTATG
789 ATGTGCTGTCGTAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
20469711 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-ACCCACGAAAAGAGCGT----GCG-T-AGC
* * * * ***
20469776 CGGCTAGAGGGCAGGATGCGCAAGCCGGGGATC--GGCCGTCCCCTCGTGCTCATCCTACTGCCA
59 C--CT------C-GG-T-C-C-AG--GCGGATCTAAGACG--ACGAAG-GC-C-TCC--CT----
* ** * * *
20469839 AACCTCGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
98 -A--T-G-C---T--G----TAGACTGGGAATGAACTCTATATGTCTAAGCCAATCGATGAAATG
* * * * * * * *
20469904 AGCGGGC--GG-GCG-G--GCGGGCACTACACC-GACTAGAGAGATGGGATGCGCAAGCCGTGGA
149 ATCGAGCAAGGCACGAGCAGCGAGCACTACGCCAG-CCAGAGAGACGGGATGCGCAAGCCGAGGA
* ** * **
20469962 TCAATAGGGTGGTAGGCAGGTTTTGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
213 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
20470027 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTT
278 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
20470092 TTTTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-AGAAGA
343 TTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGA-AAGG
** *
20470156 AGTTTTGGCCCCAAACTTTTTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCA
407 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
20470221 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-AAGAAAAGTGTCCCCATTTCAGATAG
472 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAGACAC
*
20470285 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-GG
536 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
20470349 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
601 -AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * ***
20470414 GTGCACACCCCCCGGCCCC-CTGATCGTCGGAACCCCAAAGCCGCCGGTCAGGTTGAACGACGAT
665 GCGCACACCCCCCGGCCCCTC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * ** *
20470478 GCTCCGGTGATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTG
729 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
20470543 CTG-CGGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATG
794 CTGTC-GTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * * ** * * *
20470596 CTTAGACTGGGAATGAACTTCGCACACTTAAGTCAACCCACGAAACGAGCGTGCGGGGGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-ACCCACGAAAAGAGCGTGCGTAGCCCTCG-
* * * ** * *
20470661 CTGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCC-CCCTCTGCGTGTTGCTAATC
64 GT-CC--A--GGC-GGAT-C-TAAGAC---GA-C-G-AAGG-CCTCCCTATGC-TGTAG---A--
** * * * * *
20470725 CTGCTACCAT-AACCCT-CA-GCCT-GGTCCAATCTTGGACTGGGAATAAACTCCGTATGCCTAA
108 CTGGGA--ATGAACTCTATATGTCTAAG-CCAATC---GA-T--G---AAA-T--G-AT--C-GA
* * *
20470786 GCCAACCGACGAAACGACCTAGCAGGCAGGCGGGCGGGCACTACGCCTGCTAGAGAGACGGGATG
154 G-CAA--G--G---C-A-C--G-A-GCA-----GCGAGCACTACGCCAGCCAGAGAGACGGGATG
* * *
20470851 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCGTCATATTTCTGCATGCCAA
200 CGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
20470916 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGC
265 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
** **
20470981 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAA-TATTTTGCGGTTTGGGATTTTTTAAAA
330 AAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACT-TTTTGCGGTTCAGGATTTTTTAAAA
* * * * *
20471045 TTTTTTC-AGAAGGATTTTTGGCCCCAAACTTGGTA-AGCATCATCCTTGTCTTTTTTTTTGGCA
394 TTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGT-ATTTTTGTTGGCA
* *
20471108 TGCACAAAAACATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGT
456 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
20471173 CCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGG
521 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
20471238 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
586 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
20471303 ATCGCACATCATGTGCGCACACCCCCC
651 ATCGCACATCATGTGCGCACACCCCCC
20471330 TCCCGGCCAG
Statistics
Matches: 4970, Mismatches: 673, Indels: 620
0.79 0.11 0.10
Matches are distributed among these distances:
837 3 0.00
838 9 0.00
839 19 0.00
840 144 0.03
841 337 0.07
842 815 0.16
843 62 0.01
844 28 0.01
845 28 0.01
846 9 0.00
847 3 0.00
850 1 0.00
851 2 0.00
852 3 0.00
853 1 0.00
854 2 0.00
856 1 0.00
857 2 0.00
858 2 0.00
860 7 0.00
861 12 0.00
862 5 0.00
863 10 0.00
864 6 0.00
865 3 0.00
866 6 0.00
867 9 0.00
869 3 0.00
870 14 0.00
871 5 0.00
872 3 0.00
873 2 0.00
874 4 0.00
875 6 0.00
876 4 0.00
877 4 0.00
878 6 0.00
879 4 0.00
880 1 0.00
881 5 0.00
882 2 0.00
883 2 0.00
884 27 0.01
885 639 0.13
886 8 0.00
887 15 0.00
888 15 0.00
889 14 0.00
890 1 0.00
891 245 0.05
892 198 0.04
893 395 0.08
894 246 0.05
895 548 0.11
896 28 0.01
897 333 0.07
898 109 0.02
899 4 0.00
900 2 0.00
901 5 0.00
902 250 0.05
903 226 0.05
904 9 0.00
905 5 0.00
906 3 0.00
907 3 0.00
908 5 0.00
909 3 0.00
910 3 0.00
912 2 0.00
913 5 0.00
914 1 0.00
915 2 0.00
918 11 0.00
920 2 0.00
923 1 0.00
924 3 0.00
925 4 0.00
926 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (846 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCACCCACGAAAAGAGCGTGCGTAGCCCTCGGT
CCAGGCGGATCTAAGACGACGAAGGCCTCCCTATGCTGTAGACTGGGAATGAACTCTATATGTCT
AAGCCAATCGATGAAATGATCGAGCAAGGCACGAGCAGCGAGCACTACGCCAGCCAGAGAGACGG
GATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTA
AAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCGGCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAG
GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCG
AGCCCAGCATGTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
G
Found at i:20467033 original size:26 final size:26
Alignment explanation
Indices: 20466997--20467055 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
20466987 CTCGGTTCGG
20466997 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
20467021 TTCGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
20467047 TCCGTATGC
1 TCCGTATGC
20467056 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 25 0.81
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:20467925 original size:26 final size:27
Alignment explanation
Indices: 20467896--20467953 Score: 109
Period size: 26 Copynumber: 2.2 Consensus size: 27
20467886 TCAGTCCGAT
20467896 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
20467922 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
20467949 CTTAG
1 CTTAG
20467954 TCAACCCACG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 26 0.84
27 5 0.16
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:20468107 original size:893 final size:891
Alignment explanation
Indices: 20466286--20471329 Score: 6927
Period size: 885 Copynumber: 5.6 Consensus size: 891
20466276 ACTCCGTATG
* * * *
20466286 CTTAGACTGGGAATGAACTCTGTATGTCTAAGCCAATCGATGAAATGATCGAGCAGG-CAGGCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGC-GGAC-GG--G
* * * * * * *
20466350 CGAGCACTATGCCAGCCAGAGAGACGGGCTGCGCAAGCCGAGGATGGATAGGGTGGCAGGTGGGT
58 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
20466415 TTAGGCGCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGA
123 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
20466480 TCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTA
188 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
20466545 AAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTGGT
253 AAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
20466609 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAGTCAGCCAAAAACTCGAAGTGTACA
317 AGATGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
**
20466674 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGTTAGCAAA
381 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
20466739 CCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
446 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
20466804 CCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGCGTGCACACCCCCCGGCCCACCCG
511 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCG
** * * * * * **
20466869 ATCACCGGAAGCC-CAATGCCGCCCGTCAGGTTCTCTGGCGATGGTCCGACGATGGTGCCCCGGT
575 ATCGTCGGAA-CCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
* * * * * * *
20466933 GAAGAAAAATGTGGCACTAGCACATGCCTGAGCCTAGCATGTGCTGTCGCAACCCTCGGTTCGGT
639 GAAGAAAAATGAGGCACCAGCACATGTCGGAGCCCAGCATGTGCTGTCGTAACCCTCGG-TCAGT
* *
20466998 CCGATGTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
703 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
20467063 AACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCAGGGG--
768 AACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGAT
* * * * * * ** * *
20467126 TCGCCTGGGTCCCCCTCTACGTGCTGTCAATCCTACTGCCGCAACCCTTAGTCCAGTCTGAC
832 TGGCC-GGGTCCCCCTCTGCGTGCTG-CAATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
* * * *
20467188 CTTAGACTGGGAACGAACTTCGTATGCCTAAGCCAACTGACGAAACGAGTGGACGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACT
20467253 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
20467318 ATCTTCAAATTTTTGCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
20467383 GCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTT
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * * * * ** *
20467448 TGTGGTTCGAGATTTTTTCAAATTATTTCGGAAGGATTTTTTGCCCTGAACTTCGTAGATGTGAT
261 TGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGAT
*
20467513 CCTTGTATTTTTCTTGGCATGCACAAAAAAA-TAAGCTAAAAACTCGAAGTGTACAAGATTTTGT
326 CCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
20467577 GACCATTCGAAAAAAGTG-CCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
390 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * *
20467641 TCTCAAATGCTCTTTAATGGTGTGTGAGTTCTCAAGGCTTGATGAGGGATAGGGGGCCAATATAA
455 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
20467706 GGGCGAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGTCCCCCCGATCGTTGGA
520 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGA
* * * *
20467771 ACCTCAATGCCGCCGGTCAAGTTCTCCGACGACGCTCCGGTGATGGTGCCCCGACAAAGAAAAAT
584 ACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
*
20467836 GAGACACCAGCACATGTCGGAGCCCAGCATGTGCTGTCGTAACCCTCGGTTCAGTCCGATCTTAG
649 GAGGCACCAGCACATGTCGGAGCCCAGCATGTGCTGTCGTAACCCTCGG-TCAGTCCGATCTTAG
*
20467901 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAA
713 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
20467966 ACGAGCGTGCGGGCGTTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATTGGCCGGGTCC
778 ACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGCCGGGTCC
* * * *
20468031 CCCTCTGTGTGCTGCGGATCCTGCTACCGCAACACTC-GATCTGGTCCGAT
843 CCCTCTGCGTGCTGC-AATCCTGCTACCACAACCCTCAG-TCTGGTCCGAT
* *
20468081 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGAGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GA-CGGGCGGG
* * * **
20468146 CACTACGCTGGCTAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGCAGGTTTAG
62 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
20468211 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
127 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
** * * *
20468276 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTATATTTTTCACGGTTTTTGAAAC
192 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* *
20468341 TTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACATGGTAGAT
257 TTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAT
** * *
20468405 GTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAGGAACTCGGAGTGTATAAGATT
321 GTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
20468470 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTCATTGCTACTGGCAGCAAAACTGT
386 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
20468535 AAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
451 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
20468600 ATAAGGG-CAAGTACCAGCACCCATCGCACATCATTTGCGCACA-CCCCCGACCCCCCGATCGTC
516 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC
* * * *
20468663 GGAACCTCAATGCTGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGCTGCCCCGATGAAGAAA
581 GGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
** * * *
20468728 AAT-ACGGCACCTTCACATGCTC-GAGCCCAGTATGTGCTGTCGTAACCCTCGGTCTGGTTCGAT
646 AATGA-GGCACCAGCACATG-TCGGAGCCCAGCATGTGCTGTCGTAACCCTCGGTC-AGTCCGAT
* * * *
20468791 TTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTACGCCTAAGTCAACCC
708 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
20468856 ACGAAACGAGCGTACGTGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCG
773 ACGAAACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGCCG
* * ** * *** *
20468921 GGTCCCCCTCTGTGTGCTGCCGATGTTGCTACCACAACCCTCAGCCCAATCCAAT
838 GGTCCCCCTCTGCGTGCTG-CAATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
* ** * *
20468976 CTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAACGAGCGGGCGGGCAGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACT
** * *
20469041 AAACTGGCCAGAGAGACGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
20469106 ATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
20469171 GCCTTCACGTGAAGCTTT-ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
196 GCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * * * *
20469235 TTACGGTTCAAGATTTTTTAAAAATTTTTT-GAAAGGATTTTTGGCCCCAAACTTGGTAGGTGTG
260 TTGCGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTG
*
20469299 ATCCTTGTATTTCTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTT
324 ATCCTTGTATTT-TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
20469364 GTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
388 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
20469429 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
453 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
20469494 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGTCCCCTCGATCGTCGA
518 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGG
* ** * *
20469559 AACCACAATGCCATCGGTCAGGTTCTCCAACGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAA
583 AACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * * * *
20469624 AGTGGCACCAGCACATGTCGGAGCCCAACATGTGCTGCCGTAACCCTCAGTCTAGTCTGATCTTA
648 TGAGGCACCAGCACATGTCGGAGCCCAGCATGTGCTGTCGTAACCCTCGGTC-AGTCCGATCTTA
*
20469689 GACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
712 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
20469754 AACGAGCGTGCGGGCGTTCAGCCGGCTAGA-GGGCAGGATGCGCAAGCCGGGGATCGGCC--GT-
777 AACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGCCGGGTC
* *
20469815 -CCC-CT-CGTGCT-C-ATCCTACTGCCA-AA-CCTC-GTCTGGTCCGAT
842 CCCCTCTGCGTGCTGCAATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
* * *
20469857 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGACGGGCGGG
* * * * * ** *
20469922 CACTACACCGACTAGAGAGATGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGCAGGTTTTG
62 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
**
20469987 GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
127 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * **
20470052 TTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAAC
192 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * ** *
20470117 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTTTTAGACG
257 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATG
*
20470182 TGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
322 TGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
20470247 TTGTGACCATTT-AAGAAAAGTGTCCCCATTTCAGATAGTTTAATGGCTACTGGCAGCAAACCTG
386 TTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
20470311 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-GGAAGGTTTGATGAGGGATAGGGGGCCA
450 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCA
* *
20470375 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCTGATCG
514 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
* * *** * *
20470440 TCGGAACCCCAAAGCCGCCGGTCAGGTTGAACGACGATGCTCCGGTGATGGTGCCCTGACGAAGA
579 TCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * *
20470505 AAAAT-ACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG-CGGCAACCCTCGGTCCGATCCG
644 AAAATGA-GGCACCAGCACATGTCGGAGCCCAGCATGTGCTGTC-GTAACCCTCGGTCAG-TCCG
* * * ** *
20470568 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGCACACTTAAGTCAAC
706 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
20470633 CCACGAAACGAGCGTGCGGGGGCTT-AGCCTGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGG
771 CCACGAAACGAGCGTGCGGGCG-TTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGG
* * * * *
20470697 TCGGGTCCCCCTCTGCGTGTTGCTAATCCTGCTACCATAACCCTCAGCCTGGTCCAAT
835 CCGGGTCCCCCTCTGCGTGCTGC-AATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
* *
20470755 CTTGGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGACCTAGCAGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG----AGC-GG-A--CGGG
* * *
20470820 CGGGCACTACGCCTGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGC
58 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
20470885 TTAGGCACATCGTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
123 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
20470950 TCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG
188 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
20471015 AAA-TATTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGT
253 AAACT-TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
20471079 A-A-GCATCATCCTTGTCTTTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTTT
317 AGATG--TGATCCTTG--TATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
20471142 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGC
378 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
20471207 AAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
443 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
20471272 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
508 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
20471330 TCCCGGCCAG
Statistics
Matches: 3685, Mismatches: 388, Indels: 137
0.88 0.09 0.03
Matches are distributed among these distances:
881 50 0.01
882 4 0.00
883 2 0.00
884 28 0.01
885 660 0.18
886 27 0.01
887 5 0.00
888 4 0.00
889 3 0.00
890 3 0.00
891 249 0.07
892 203 0.06
893 520 0.14
894 267 0.07
895 600 0.16
896 34 0.01
897 345 0.09
898 165 0.04
899 3 0.00
900 1 0.00
901 4 0.00
902 284 0.08
903 215 0.06
904 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
TGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGAT
CCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAAC
CTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGA
GGCACCAGCACATGTCGGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCAGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGCCGGGTCCCCC
TCTGCGTGCTGCAATCCTGCTACCACAACCCTCAGTCTGGTCCGAT
Found at i:20469714 original size:26 final size:26
Alignment explanation
Indices: 20469685--20469737 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20469675 CTAGTCTGAT
*
20469685 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20469711 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20469737 C
1 C
20469738 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20470625 original size:26 final size:26
Alignment explanation
Indices: 20470570--20470625 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
20470560 CCGATCCGAT
* **
20470570 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGCACA
20470596 CTTAGACTGGGAATGAACTTCGCACA
1 CTTAGACTGGGAATGAACTTCGCACA
20470622 CTTA
1 CTTA
20470626 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCACA
Found at i:20472544 original size:801 final size:788
Alignment explanation
Indices: 20471346--20472814 Score: 2266
Period size: 801 Copynumber: 1.8 Consensus size: 788
20471336 CCAGCTGGTT
* *
20471346 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAAGTCAACCAATGAAACGAGCATGCAGGCGCT
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCATGCAGGCGCT
* * * *
20471411 CAGCTGGCCAGAAGGGCGAGATGCGCAAGCCGGGGATCTACCGGGTGCCCCTCTGCGTGCTACCG
66 CAGCTAGCCAGAAGGGCGAGACGCGCAAGCCAGGGATCTACCGGGTGCCCCTCTACGTGCTACCG
* *
20471476 ATCCTGCTGTCATAACCCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAAGCCTAA
131 ATCCTGCTGCCATAACCCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAAGCCTAA
*
20471541 GCCAACCGACGAAACGAGCGGACGGGCGGGCAGGCACTACATCGGCCAGAGAGACGGGATGCGCA
196 GCCAACCGACGAAACGAGCGGACGGGCGGGCAGGCACCACATCGGCCAGAGAGACGGGATGCGCA
* *
20471606 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATTCC
261 AGCTGTAGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCC
*
20471671 ACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
326 ACTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
20471736 TGACTCGTTTT-TCATTTTTCACGATTTTTGAAACTTTTTGCAATTTAGGATTTTTTAAAATTTT
391 CGACTCGTTTTCT-ATTTTTCACAATTTTTGAAACTTTTTACAATTCAGGATTTTTTAAAATTTT
* * **
20471800 TTCAGAAGGATTTTTGGCCCCAAACTTGGTAACCATGATCCTTGTATTTTTTTTGGCATGCACAA
455 TTCAGAAGGAGTTTTGGCCCCAAAC-TAG--A-CATGATCCTTGTATTTTGGTTGGCATGCAC--
* *
20471865 AAAAATTCAGGTAAAAACTCAAAGTGTACATGATTTTGTGACCATTTG-AAAAAAGTGTCCCCAT
514 ---AATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCA-TTGAAAAAAAGTGTCCCCAT
* * *
20471929 TTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGGTCTT-TAACGGGGTG
575 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTCTAA-GGGGTG
20471993 TGAGTTCT-AGAGGTTTGATGAAGGATAGGGGTTCTAATGTCGTCGGTCAGGTTTTTCGGTGATG
638 TGAGTTCTCA-AGGTTTGATGAAGGATAGGGGTTCTAATGTCGTCGGTCAGGTTTTTCGGTGATG
20472057 CTTCGGTGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACGTGCCCGAGCCTAGCATGTGC
702 CTTCGGTGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACGTGCCCGAGCCTAGCATGTGC
20472122 TACCGTAACCCTCGGTTCGGTC
767 TACCGTAACCCTCGGTTCGGTC
* *
20472144 CGATCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCAATGAAACGAGCATGCGGGCGCT
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCATGCAGGCGCT
* * * **
20472209 CAGTTAGCCAGAAGGGTGAGACGCGTAAGCCAGGGATCTGTCGGGTGCCCCTCTACGTGCTACCG
66 CAGCTAGCCAGAAGGGCGAGACGCGCAAGCCAGGGATCTACCGGGTGCCCCTCTACGTGCTACCG
* * *
20472274 ATCCTGCTGCCGTAA-CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
131 ATCCTGCTGCCATAACCCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAAGCCTAA
* * *
20472338 GCCAACCGACGAAACGAACGGACGGGCGGGCGGGCGGGCACCACATCGGCCAGAGAGATGGGATG
196 GCCAACCGACGAAACG-A--G-CGGACGGGCGGGCAGGCACCACATCGGCCAGAGAGACGGGATG
* *
20472403 CGCAAGCCT-TAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATCTTTCTGCATGCCA
257 CGCAAG-CTGTAGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCA
*
20472467 ATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
321 ATGCCACTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* ** *
20472532 CAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
386 CAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACAATTCAGGATTTTTTAAAA
** *
20472597 TTTTTTTGGAAGGAGTTTTGGCCCCAAACTAGACGTGATCCTTGTATTTTGGTTGGCATGCACAA
451 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTAGACATGATCCTTGTATTTTGGTTGGCATGCACAA
* *
20472662 TTCAGCTAAAAACTTAAAGTGTACAGGATTTTGTGCCCATTGAAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTGAAAAAAAGTGTCCCCATTTCAGA
20472727 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTCTAAGGGGTGTGAGTTCT
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTCTAAGGGGTGTGAGTTCT
*
20472792 CAAGGTTTGATGAGGGATAGGGG
646 CAAGGTTTGATGAAGGATAGGGG
20472815 GCCAATATAT
Statistics
Matches: 611, Mismatches: 51, Indels: 25
0.89 0.07 0.04
Matches are distributed among these distances:
791 39 0.06
792 105 0.17
797 89 0.15
798 132 0.22
800 3 0.00
801 240 0.39
802 3 0.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (788 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCATGCAGGCGCT
CAGCTAGCCAGAAGGGCGAGACGCGCAAGCCAGGGATCTACCGGGTGCCCCTCTACGTGCTACCG
ATCCTGCTGCCATAACCCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAAGCCTAA
GCCAACCGACGAAACGAGCGGACGGGCGGGCAGGCACCACATCGGCCAGAGAGACGGGATGCGCA
AGCTGTAGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCC
ACTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACAATTCAGGATTTTTTAAAATTTTT
TCAGAAGGAGTTTTGGCCCCAAACTAGACATGATCCTTGTATTTTGGTTGGCATGCACAATTCAG
CTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTGAAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTCTAAGGGGTGTGAGTTCTCAAGG
TTTGATGAAGGATAGGGGTTCTAATGTCGTCGGTCAGGTTTTTCGGTGATGCTTCGGTGATGGTG
CCCCGGTGAAGAAAAATACGGCACCAGCACGTGCCCGAGCCTAGCATGTGCTACCGTAACCCTCG
GTTCGGTC
Found at i:20473053 original size:26 final size:26
Alignment explanation
Indices: 20473017--20473070 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
20473007 GGTCTGATCT
*
20473017 TAGACTAGGAATGAACTTCGTATGCC
1 TAGACTAGGAATGAACTCCGTATGCC
*
20473043 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTAGGAATGAACTCCGTATGCC
20473069 TA
1 TA
20473071 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCC
Found at i:20473918 original size:26 final size:26
Alignment explanation
Indices: 20473889--20473941 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20473879 CCGGTCTGAT
20473889 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20473915 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20473941 C
1 C
20473942 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20479223 original size:26 final size:26
Alignment explanation
Indices: 20479194--20479246 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20479184 ACCAGCTGAC
* *
20479194 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20479220 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20479246 C
1 C
20479247 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:20480128 original size:26 final size:26
Alignment explanation
Indices: 20480099--20480149 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20480089 CCGATCCGAT
* *
20480099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
*
20480125 CTTAGACTAGAAATGAACTTCGTAT
1 CTTAGACTAGAAATGAACTCCGTAT
20480150 CCCTCAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:20481037 original size:26 final size:26
Alignment explanation
Indices: 20481001--20481056 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
20480991 CTGGTTCGAT
*
20481001 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
20481027 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
20481053 CTTA
1 CTTA
20481057 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20481359 original size:905 final size:896
Alignment explanation
Indices: 20479194--20483677 Score: 5522
Period size: 902 Copynumber: 5.0 Consensus size: 896
20479184 ACCAGCTGAC
* * *
20479194 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCC
* * * * * * * * * *
20479259 ACAAAACAAGCGTACGGGCACTCCGTCGACCAGAGGGGCGGGATGCGTAGGCCGGGGATCGGTCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * *** * *
20479324 GGTCCCCCTCTACGTGCTGTCGATCCTGCTGTCGTAACCCTCAGTCCT-GTTTGATCTTAGAGTT
131 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGT-CTGGTCCAATCTTAGACTG
* ** * *
20479388 GCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAAGCGGGCGGGCAGGCGGGCACTA
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGC-GG-GAGCGGGCGGGCACTA
* * *
20479453 CGTCGGCCAGAGAGACGGGATGGGCAAGCCGTGGATCGATAGGGTGTTAGGTGGGTTTAGGCACA
257 CGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
20479518 TTTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
322 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * * *
20479583 CCTTCATGTGAAGTTTCATTGCAAGACGACTAGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
387 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTT
* * *
20479648 GCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACCTGGTAGACATGATC
452 GCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
20479713 CTTGTATTTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACTCCAAGTGTACATGATTTT-TG
517 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
* *
20479777 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGTCTACTGGCAGAAAACCTGTAAAAT
582 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
20479842 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAATATAAG
647 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
20479907 GGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCTTGCCGGCCCCTCGATCATCGG
712 GGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCC---CCGGCCCCCCGATCACCGG
** * * *
20479972 AACCCCAATGCCAACGGTCAAGTTCTCTAGCGATGCTCCGACGATGGTGCCCC-AGTGAAGAAAA
774 AACCCCAATGCCGTCGGTC-AGGTCTC-CGTGATGCTCCGACGATGGTGCCCCGA-TGAAGAAAA
* * * * * *
20480036 ATGCGACACCAGCACATGCCCGAGCCCAGCATGTTCTGCCCACAACCCTCAGTCCGATCCGAT
836 ATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTG-CC-CAACCCTCGGTCCGGTCCGAT
* * * * *
20480099 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGAAATGAACTTCGTATCCCTCAA-TCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT-GCTTAAGTCAACC
* * * * * **
20480163 CATGAAAAGAGCGTGTGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGATC
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * * * *
20480228 GGGTCCCCCTCTGCGTGCTGTCAATCCTACTGCCGCAACCCTCAGTTTGGTCCAATCTTAGACTA
130 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTG
* * *
20480293 GGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGAC-GGA-CGGACGGGCACTAC-
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGAGCGGGCGGGCACTACG
* * * * * *
20480355 ACTGGCCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGAGTTTAGGCCCAT
259 TC-GGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
**
20480420 CTTCATATTTCTGCGTGCCAATGCTGTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
323 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
20480485 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTTGATTTTTAAAACCTTTTG
388 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTG
* * * *
20480550 CGGTTCGGGATTTTTTTTGAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACATGA
453 CGGTTCGGGA--TTTTTT-AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
20480615 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
515 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
* *
20480680 TGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAA
580 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * * *
20480745 ATCCCAAATGCTCTTTAAGAGGGTGTGAGTTCGCGAGGTTTGATGAGGCATAGGGGGCCAATATA
645 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
**
20480810 AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCTCCCGGCCCCCCGATCACCGG
710 AGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCC-CCCGGCCCCCCGATCACCGG
* * *
20480875 AACCCCAATACCGTCGGTCAGGTTCTCCTGTGATGCTCTGACGATGGTGCCCCGGTGAAGAAAAA
774 AACCCCAATGCCGTCGGTCAGG-TCTCC-GTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAA
* * * * *
20480940 TATGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCCCTAACCCTTGGTCTGGTTCGAT
837 TACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCC-AACCCTCGGTCCGGTCCGAT
*
20481001 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCTTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCC
** *
20481066 ACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * ***
20481131 AGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCAATCCAATCTTAGACTGG
131 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGG
* * * * * * *
20481196 GAATGAACTTCGTATACCTAAGCAAACTGACGAAACCAGCGGGTGGGCAAGCGGGCGGGCACTGC
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGG--AGCGGGCGGGCACTAC
* **
20481261 GTCGGCCAGAGAGATGGGATGCGCACGCCGTGGATCGATAAAGTGGTAGGTGGGTTTAGGCACAT
258 GTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
20481326 CTTCATATTTCTGTGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
323 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * * * *
20481390 CTTCGCGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCAAAAATTTTTA
388 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTG
*
20481455 CGGTT-GAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
453 CGGTTCG-GGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
20481519 CTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTG
517 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
* *
20481584 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAAT
582 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
20481649 CTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
647 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
20481714 GGCCAAGTACCAGCAGCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACTGGAA
712 GGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCACCGGAA
* * * * * *
20481779 CCCCAATGTCGTCGGTCAGGATCTCCGGTAATGCTCCGGCGATGGTGCCCCGACGAAAAAAAATG
776 CCCCAATGCCGTCGGTCAGG-TCTCC-GTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATA
* ** * * * *
20481844 CAGCACCAGCACATGCAAGAGCCTAGCATGTACTGCTGCAACCCTCAGTCCAGTCCGAT
839 CGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGC-CCAACCCTCGGTCCGGTCCGAT
* * * *
20481903 CTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCTTAAGTTAACCA
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCC
* * * * *
20481968 ATGAAATGAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGATCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * *
20482033 GGTCCCCCTCTACGTGCTGCAGATACTACTGCCGCAACCCTC-GATCTGATCCAATCTTAGACTG
131 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCCAATCTTAGACTG
* * *
20482097 GGAATGAACTCCGTATGCCTAAGCCAACCGACCAAACGAGCAGGCGGATGGGCGGGCAGGCACTA
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGG--GAGCGGGCGGGCACTA
*
20482162 CGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACA
257 CGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * * *
20482227 TCATCATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTAAATTCATATAATGGTCCCTTAAC
322 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
20482292 CCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCATGATTTTTTAAACTTTTT
387 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTT
** * * * * *
20482357 GCAATTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACGTGGTTGATGTGATC
452 GCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
20482422 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAACCTCACAGTGTACAAGATTTTGTG
517 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
* * *
20482487 ACCATTTCAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAAT
582 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
20482552 CTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
647 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
20482617 GGCCAAGTACCAGCACCCATTGCACATCACGTGCGCACACCCCCTGGCACCCCCGATCGCCGGAA
712 GGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCACCGGAA
* * * * *
20482682 CCCCAGTGCCG-C---C-GGT-TACGT--T-CTCCAACGATGGTGCCCCGACGAAGAAAAATGCG
776 CCCCAATGCCGTCGGTCAGGTCTCCGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACG
* *
20482738 GCACCAGCACATGCTCGAGCCTGGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
841 GCACCAGCACATGCCCGAGCCTAGCATGTGCTGCC-CAACCCTCGGTCCGGTCCGAT
* * *
20482795 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCC
* * * * *
20482860 ACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAACTGGGGATCG-GCT
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-
* * * * * * *
20482924 GGGTCCCCCTCTGCGTGCTACCGATCCTTGCTACTGCAACCTTCAGTCTGGTGCGATCTTATACT
130 GGGTCCCCCTCTGCGTGCTGCCGATCC-TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACT
* * * *
20482989 GGGATTGAACTCCGTATGTCGAAGCCAACCGATGAAACGA---GC-GG-GCGGGCGGGCACTACG
194 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGAGCGGGCGGGCACTACG
* * *
20483049 CCAGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
259 TCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * *
20483114 TTTCATAATTC-ACATAGCCAATGTGCCATTGTTTAATGGCTTGTAAATTCAAACAAATGGCTCC
324 -TTCATATTTCTGCGT-GCCAA--TGCCATT-TTT-ATGGCTTGTAAATTCATAC-AATGG-TCC
* * * * * *
20483178 CTTAAGCCTTCACATGAAGTTTCAT-GCAAGATGATTCGTTTTCTATTTTTCATGAATTTCAAAG
381 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
* * * *
20483242 CTTTTT----ATCGGGA-TTTTT-ACATTTTTTC-AAAGAAGTTTT---CCC--ACTTGGTAGAT
446 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * **
20483295 GGGATACTTGTA-TTTTGTTGGCATGCAC--AAAAA--CAGC----AACT-----TG-AGGAGA-
511 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
20483344 TTTGTGACCATTT-------GTGT--CCATTTC-GACACTTTAAT-GCTACTGGCA-CAAACCTG
576 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
20483397 TAAAATCT-AAATGCTCTTTAACGGGGGTGTGAG-T-TCATAGAG-TTGATGAGTGATA-GGGGC
641 TAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCA-AG-GTTTGATGAGGGATAGGGGGC
** * * *
20483457 CAATATATAGGGCCAAGTACCAGCACCCATCACAAATCAAGTGTGCGCACACCCCCC-G--TCAC
703 CAATATA-AGGGCCAAGTACCAGCACCCATTGCACATC-A-TGTGCGCACACCCCCCGGCCCCCC
* * ** * * **
20483519 GATCGCC--AAGCTCCAATGCCACCGGCCAGGTCTCCGGGATGCTCCGGTGATGGTGCCCCGATG
765 GATCACCGGAA-CCCCAATGCCGTCGGTCAGGTCTCCGTGATGCTCCGACGATGGTGCCCCGATG
* * *
20483582 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCTGGTC
829 AAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCC-CAACCCTCGGTCCGGTC
*
20483647 TGAT
893 CGAT
*
20483651 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
20483678 CTAAGCCAAC
Statistics
Matches: 3140, Mismatches: 382, Indels: 163
0.85 0.10 0.04
Matches are distributed among these distances:
846 2 0.00
847 8 0.00
848 10 0.00
849 15 0.00
850 55 0.02
851 30 0.01
852 27 0.01
853 14 0.00
854 7 0.00
855 1 0.00
856 108 0.03
863 13 0.00
864 4 0.00
865 2 0.00
870 3 0.00
874 4 0.00
876 5 0.00
878 15 0.00
879 19 0.01
881 3 0.00
884 10 0.00
885 88 0.03
886 19 0.01
887 5 0.00
888 8 0.00
889 5 0.00
890 16 0.01
891 44 0.01
892 239 0.08
893 63 0.02
894 1 0.00
895 2 0.00
896 2 0.00
897 1 0.00
898 2 0.00
899 1 0.00
900 1 0.00
901 206 0.07
902 908 0.29
903 514 0.16
904 108 0.03
905 458 0.15
906 93 0.03
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGAGCGGGCGGGCACTACGTC
GGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGG
TTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCCA
ATGCCGTCGGTCAGGTCTCCGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACC
AGCACATGCCCGAGCCTAGCATGTGCTGCCCAACCCTCGGTCCGGTCCGAT
Found at i:20481936 original size:26 final size:26
Alignment explanation
Indices: 20481907--20481958 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20481897 TCCGATCTTG
*
20481907 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
20481933 GACTGGGAATGAACTCCATATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
20481959 AGTTAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
GACTGGGAATGAACTCCATATGCTTA
Found at i:20485100 original size:533 final size:533
Alignment explanation
Indices: 20484094--20485158 Score: 1963
Period size: 533 Copynumber: 2.0 Consensus size: 533
20484084 CCTCAGCCAA
* *
20484094 CCGACGAAACGAATGGGCAGGTGGGCGGGTGGGCACTACGTCGGCGATAGAGATGGGATGCGCAA
1 CCGACGAAACGAACGGGCAGGCGGGCGGGTGGGCACTACGTCGGCGATAGAGATGGGATGCGCAA
*
20484159 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCTAATGCCA
66 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCTAATACCA
20484224 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
131 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
20484289 GACTCGTTTTCTATTTTACACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
196 GACTCGTTTTCTATTTTACACGATTTTTGAAACTTTTTGCAGTTCGAGAATTTTTAAAATTTTTT
* *
20484354 TGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGGTCCTTGTATTTTTTTTGGCATGCACAAAA
261 TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
20484419 AAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
326 AAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
20484484 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
391 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
20484549 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
456 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
20484614 CATGTGCGCACAC
521 CATGTGCGCACAC
20484627 CCGACGAAACGAACGGGCAGGCGGGCGGGTGGGCACTACGTCGGCGATAGAGATGGGATGCGCAA
1 CCGACGAAACGAACGGGCAGGCGGGCGGGTGGGCACTACGTCGGCGATAGAGATGGGATGCGCAA
*
20484692 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-TTCTCAATACC
66 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCT-AATACC
20484756 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
130 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
20484821 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTGAGAATTTTTAAAATTTTT
195 CGACTCGTTTTCTATTTTACACGATTTTTGAAACTTTTTGCAGTTCGAGAATTTTTAAAATTTTT
* *
20484886 TTGGAAGG-GTTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
260 TTGAAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
20484950 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
324 AAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
20485015 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
389 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
20485080 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
454 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
20485145 ATCATGTGCGCACA
519 ATCATGTGCGCACA
20485159 GCCCCCCCGA
Statistics
Matches: 515, Mismatches: 15, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
532 4 0.01
533 511 0.99
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (533 bp):
CCGACGAAACGAACGGGCAGGCGGGCGGGTGGGCACTACGTCGGCGATAGAGATGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCTAATACCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTACACGATTTTTGAAACTTTTTGCAGTTCGAGAATTTTTAAAATTTTTT
TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
AAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
CATGTGCGCACAC
Found at i:20486218 original size:26 final size:26
Alignment explanation
Indices: 20486182--20486233 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20486172 CGGTCTGATG
20486182 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
20486208 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
20486234 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:20487118 original size:26 final size:26
Alignment explanation
Indices: 20487082--20487134 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20487072 CTGGTCCGAT
20487082 CTTGGACTGGGAATGAACTCCATATG
1 CTTGGACTGGGAATGAACTCCATATG
*
20487108 CTTGGACTGGGAATGAACTCCGTATG
1 CTTGGACTGGGAATGAACTCCATATG
20487134 C
1 C
20487135 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTGGACTGGGAATGAACTCCATATG
Found at i:20487541 original size:902 final size:902
Alignment explanation
Indices: 20484649--20488207 Score: 4905
Period size: 905 Copynumber: 4.0 Consensus size: 902
20484639 ACGGGCAGGC
* * * *
20484649 GGGCGGGTGGGCACTACGTCGGCGATAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
20484714 GGTGGGTTTAGGCACATCTTCATATTTCTGCTTCTCAATACCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATCGCAATACCATTTTTATGGCTTGTAAATTCAT
20484779 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *
20484844 ATTTTTGAAACTTTTTGCAGTTTGAGAATTTTTAAAATTTTTTTGGAAGGGTTTTTGGCCCCAAA
196 ATTTTTGAAACTTTTTGCAGTTCGAGAATTTTTAAAATTTTTTTGAAAGGGTTTTTGGCCCCAAA
* *
20484909 CTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
20484974 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
20485039 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
20485104 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-------GCC
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCC
* * * * * * * * *
20485162 CCCCCGAGCG-CTAGAACCACAATGCCGTCGGTTAGGTTCTTCGACGATGCTCCGACGATGGTGC
521 CCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGACGATGC
* * ** * ** *
20485226 CGCGGCGAAGAAAAATGTGGCA-CAAGCACATGCCCGAGCAAAGCATGTGTTGCCGTAACCC---
585 CCCGACGAAGAAAAATACGGCACCAA-CACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTGA
* * *
20485287 TC-GGTCCGGTC-----C-------G-A-T-C--A----TAGACTGGGAATGAACTCTGTATGAC
649 TCTGGTCCGATCTTGGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
20485330 TCAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCGAGATGCGTAACCCG
714 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * ** ** *
20485395 GGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGTCGGAACCCTCGTTCCGGTCCGA
779 GGGATCGGTCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCACAACCCTCGGTCCGGTCCGA
*
20485460 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-TCGATGAAACGAGCAAGCGGGT
844 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCAAGCGGGT
* ** * *
20485519 GGGCGGGTGGGCCCTACGCCGGTTAGAGAGATGGGATACGCAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * * * * *
20485584 GGTCGATTTAGGTACATTTTCATATTGCT--ATGTGCCAATGCCATTTTTATGGCTTCG-AAATT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCAT-CG-CAATACCATTTTTATGGCTT-GTAAATT
* * * *
20485646 CGTAGAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGATGACTCGTTTTCTATTTTTC
128 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
** * * **
20485711 ATGATTTTCAAAACTTTTTGCAGTTC-AGGATTTTTTAAAATTTTTTCGAAAGTACTTTTT--CC
193 ATGATTTTTGAAACTTTTTGCAGTTCGA-GAATTTTTAAAATTTTTTTGAAAG-GGTTTTTGGCC
* * * *
20485773 CCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACT
256 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
20485838 CAGAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTA
321 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* **
20485903 CAGAAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
386 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * ** *
20485968 GGGATAGGGGGCCAATATAATGGTCAAGTACCAGCACCCATTGCACATCATGTGCGCACGCCCCC
451 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA--CACCC
* * * *
20486033 CCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCCCCTGTG
514 CC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCG
** * * * * * *
20486098 ATCG-TGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCATCATGTGCTGCCATA
578 A-CGATGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGTA
* * * * *
20486162 ACCCTCAGTCCGGTCTGATGTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
642 ACCCTGA-TCTGGTCCGATCTTGGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
* ** * * * *
20486227 CGTATGCCTAAGTCAAACCATGAAACGAGCGTGCAAGTGCTCAGTCGGCCATAAGGGCTGGATGC
706 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGC
* * * * * *
20486292 GCAAGCCGGGGATC-GACTGGGTCCCCCTCTGCATGCTATCGATCCTGTTGCCACAACCC-CTGG
771 GCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCACAACCCTC-GG
* * *
20486355 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACTGACGAAACGTG-AATG
834 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAA-G
*
20486419 CGGGC
898 CGGGT
* *
20486424 AGGCGGGTGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
20486489 GGTGGGTTTAGGCACATCTTCATATTTCTGCTTCTCAATACCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATCGCAATACCATTTTTATGGCTTGTAAATTCAT
* *
20486554 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTACACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *
20486619 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAG-TTTTGGCCCCAA
196 ATTTTTGAAACTTTTTGCAGTTCGAGAATTTTTAAAATTTTTTTGAAAGG-GTTTTTGGCCCCAA
* * *
20486683 ACTTGGTAGATGTGGTCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
*
20486747 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
20486812 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTAGAGGTTTGATGAGGGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
20486877 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCATGTGCGCACACCCCCCGGC
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGC
*
20486942 CCTCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGACGATGC
520 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGACGATGC
* * * *
20487007 CTCGACGAAGAGAAATACGGCACCAACACAT-CCCAAGCCCAGCATGTGCTGTCGCAACCCTTGA
585 CCCGACGAAGAAAAATACGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGTAACCC-TGA
*
20487071 TCTGGTCCGATCTTGGACTGGGAATGAACTCCATATGCTTGGACTGGGAATGAACTCCGTATGCC
649 TCTGGTCCGATCTTGGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
* *
20487136 TAAGTCAACCCATGAAACGAGCGTGCGGGTGCTTAGTCGGCCAGAGGGGCGGGATGCGCAAGCCG
714 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * *
20487201 GGGATTGG-CTGGGTCCCCCTCCGCGTGCTGCCAATCCTGCTACCACAACCCTCGGTCTGGTCCG
779 GGGATCGGTC-GGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCACAACCCTCGGTCCGGTCCG
* ** * ** *
20487265 ATCTTAGATTGGGAATGAACTCTATATGCCTAAGCCAACTGACAAAACGAGCGGGGCAGGT
843 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC-AAGCGGGT
** * * * *
20487326 GGGCGGGCAGGCACTATGCCGACCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTA
1 GGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
20487391 GGTGGGTTTAGGCACATCTTCATATTTCTGCATAGCAATTCCACTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATCGCAATACCATTTTTATGGCTTGTAAATTCAT
20487456 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *
20487521 ATTTTTGAAACTTTTTGCGGTTCGAGAATTTTTAAAATTTTTTTGGAAGGGTTTTTGGCCCCAAA
196 ATTTTTGAAACTTTTTGCAGTTCGAGAATTTTTAAAATTTTTTTGAAAGGGTTTTTGGCCCCAAA
* * *
20487586 CTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCGCAAAAAAATTCAGCTAAAAACTCGAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
*
20487651 TGTACAAGATTTTGTGACCATTTGACAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
20487716 AGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
** *
20487781 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCTCCGGCC
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCC
* * * * *
20487846 CCCACGATCGACGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGACGATGCC
521 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGACGATG-C
* * *
20487911 CCCGACGAAGAGAAATACGGCACCAACACAT-CCCAAGCCCGGCATGTGCTGTCGTAACCCTCGA
585 CCCGACGAAGAAAAATACGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCT-GA
*
20487975 TCTGGTCCGATCTTGGACTGGGAATGAACTACATATGCTTAGACTGGGAATGAACTCCGTATGCC
649 TCTGGTCCGATCTTGGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
*
20488040 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGTCGGCCAGAGGGGCGGGATGCGCAAGCCG
714 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * *
20488105 GGGATTGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCATAACCCTCGGTCTGGTCCGA
779 GGGATCGGTCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCACAACCCTCGGTCCGGTCCGA
* * *
20488170 TCTCAGATTGGGAATGAACTCCGTATGCCTAAGTCAAC
844 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
20488208 CCACGAAATG
Statistics
Matches: 2377, Mismatches: 246, Indels: 98
0.87 0.09 0.04
Matches are distributed among these distances:
868 1 0.00
869 240 0.10
870 212 0.09
871 7 0.00
879 99 0.04
880 4 0.00
883 2 0.00
884 6 0.00
889 1 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 1 0.00
901 240 0.10
902 354 0.15
903 289 0.12
904 292 0.12
905 598 0.25
906 27 0.01
907 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
GGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCATCGCAATACCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
ATTTTTGAAACTTTTTGCAGTTCGAGAATTTTTAAAATTTTTTTGAAAGGGTTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCC
CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGACGATGCC
CCGACGAAGAAAAATACGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTGATC
TGGTCCGATCTTGGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
GATCGGTCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCACAACCCTCGGTCCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAAGCGGGT
Found at i:20488314 original size:159 final size:159
Alignment explanation
Indices: 20488015--20488361 Score: 487
Period size: 159 Copynumber: 2.2 Consensus size: 159
20488005 ACATATGCTT
* * * *
20488015 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGTCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAGCCGG
* * **
20488080 CCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGC
66 CCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGC
* * *
20488145 TACCATAACCCTCGGTCTGGTCCGATCTC
131 GACCACAACCCTCAGTCTGGTCCGATCTC
* * *
20488174 AGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGACCGTGCGGGTGCTCAGCCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAGCCGG
* * * *
20488239 CCAGAGGGGCGAGATGCGCAAGTCGGGGATCGACCGGGTCCCCTTCTGCGTGCTGTCGATCCTGC
66 CCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGC
* * *
20488304 GATCGCAACCCTCAGTCTGGTCCGATCTT
131 GACCACAACCCTCAGTCTGGTCCGATCTC
* *
20488333 GGACTAGGAATGAACTCCGTATGCCTAAG
1 AGACTGGGAATGAACTCCGTATGCCTAAG
20488362 CCAGCCGAGG
Statistics
Matches: 164, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
159 164 1.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (159 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAGCCGG
CCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGC
GACCACAACCCTCAGTCTGGTCCGATCTC
Found at i:20490197 original size:26 final size:26
Alignment explanation
Indices: 20490161--20490212 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20490151 CAGTCCGATT
*
20490161 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20490187 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20490213 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20491094 original size:26 final size:25
Alignment explanation
Indices: 20491065--20491117 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
20491055 GGTCCGATCT
*
20491065 TAGAATGGGAATGAACTCCGTATGCC
1 TAGAACGGGAATGAACT-CGTATGCC
*
20491091 TAGACCGGGAATGAACTCGTATGCC
1 TAGAACGGGAATGAACTCGTATGCC
20491116 TA
1 TA
20491118 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (25 bp):
TAGAACGGGAATGAACTCGTATGCC
Found at i:20491568 original size:902 final size:898
Alignment explanation
Indices: 20489421--20497820 Score: 10734
Period size: 903 Copynumber: 9.4 Consensus size: 898
20489411 TCCCTCTCTG
* * * *
20489421 CAACCCTTGGTCCGGTCCGATCTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAATCGACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
20489486 ACGAGCATGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 AC--G-A-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
20489551 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCTAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * **
20489616 GCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCAAT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
*
20489681 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGA
257 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* * * ** **
20489746 GTTTTGGCCCTAAACTTGGTAAAAGTGATCCTTGTATTTTTGTTGGTGTGCGTAAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
20489811 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGACAAAAGTGTCCCCATTTCAGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
20489876 TAATGGCTACTGGCAGCAAACCTGTACAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
20489941 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * ** *
20490006 CACACCCCCCCGG-CCCCCCGATCGTCGAAAGCCTAATGTCGCCGGTTAGGCGCTCCGACGATGC
582 CACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC-ATGC
* * *
20490070 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACAAGCCCGAGCCCAGCATGTGCT
645 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
20490135 GTCGCAACCCTCGGTCCAGTCCGATTTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAAT
710 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
20490200 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGGGTGTGGGTGCTCAGCCGGCCTGAGGGGCG
775 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
** * * * * * *
20490265 GGATGCGCAAGCCGGGGATCGACCGGGTCCCCTTCAGGTGTGCTGTCGATCCTACTGCCG
840 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC-TGCGTGCTGCCGATCCTGCTGCCA
* * * * *
20490325 TAACCCT-GGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
20490389 ACGAGCAGGCGGGCGGGCGGGTGGGCACTATGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
66 AC--G-A-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * ** ** * *
20490454 TCGATAGGGTGGTAGGTGGTTTTAGGCGCATCTTCATATTTCTGTGTGCCAATGATAGTGTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
20490519 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** ** *
20490584 TTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA
257 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* * *
20490649 TTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
20490714 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
20490779 TAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTTGAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
** * *
20490844 GTTTGATGAGGGATATAGGGCCAGTATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCG
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** *
20490909 CACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGCTAGTCAGGTTCTCTGGCATTGCT
582 CACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCA-TGCT
* *
20490974 CCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG
646 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * *
20491039 CCGTAACCCTCGGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAGACCGGGAATG
711 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
*
20491104 AACT-CGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
776 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * **
20491168 GATGCGCAAGCCTGGGATTGGTCGGGTCTCCCTCTGCGTGCTGCCAATCCTGCTATCA
841 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* ** * *
20491226 CAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
20491291 ACGAGCGGGCGGGCGGGCGTGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 ACGAGCGGGCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
20491356 TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
20491421 GCTTTTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
20491486 TTTTATTTTTCACAATTTTCGAAACTTTTTGA-GGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
257 TTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * * *
20491550 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTATTGG-ATGCGCAAAAAAATTAA
321 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
20491614 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACT
386 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
20491679 TTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
451 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
20491744 GGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGC
516 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
20491809 GCACA-CCCCCGG-CCCTCCGATCGCCGGAACCCTAATGCCACCGGTCAGGTTCTCCGGGGATGC
581 GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GGCATGC
* * * *
20491872 TGCGACGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAACCCAGCATGTGCT
645 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * *
20491937 GCAGCAACCCTCGGTCCGGTCCGATCTTATACTGGGAATGAACTTCGTAAGCTTAGACTTGGAAT
710 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * *
20492002 GAATTCCGTATACCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
775 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * *
20492067 AGATGCGCAAGCCGGGGACCGGTCGAGTCCCCCTCTG-GTGCTGTCGATCCTGCTGCCA
840 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
*
20492125 CAACCCTCGGTCTC-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 CAACCCTCGGTC-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
20492189 AACGA----GCAGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGTAAGTCG-GGAATC
65 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG-ATC
* * * * * *
20492249 GATAGGGTGGTGGGTGGATTCAGACACATCTTCATATTTCTACATTCCAATGCCATTTTTATGGC
129 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
20492314 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACGACTCGTTTT
194 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** * *
20492379 CTATTTTTCTTGATTTTTGAAACTTTTTGCGGTTTCG-GATTTTTTAAAATTTTTTCGGAAGGAT
259 CTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
* * ** *
20492443 TTTTGGCGCAAAACTTTATAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
323 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
20492508 TAAAAAGTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
388 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20492573 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTC-CTGAG
453 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAG
* * *
20492637 GTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCA
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * * * * * *
20492702 AACACCCCCCGGCCTCCTCGATCATTGAAACCCTAATGCTGCCGGTTAGGTTCTCCGACGATGCT
582 CACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC-ATGCT
* *
20492767 CCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
646 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
20492832 CTGCAA-GC-C--T-CGGT-C---C---G--T-----T---CT--G-AT-CTTAGACTGGGAATG
711 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * ** * *
20492871 AACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGAGCGTACGCTCAACCGGCAAGAGGGGCGG
776 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * *
20492936 GATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTATCC-ATCCTGTTGCCG
841 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-GCCGATCCTGCTGCCA
*** *
20492994 CAACCCTCGGTCCAAACCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
20493059 ATGA----GCGGGC-GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
20493119 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* *
20493184 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
20493249 ATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTGTAAAATTTTTTCGAAAGGAGTTT
261 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
** *
20493314 TGG-CTAAAACCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTA
326 TGGCCCCAAA-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
20493378 AAAACTTGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
20493443 TGGCTATTGGCTGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
20493508 TGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGTACCCATCGCACAACATGTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
20493572 ACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTTTCCGATG-ATTCCCC
585 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG--GCATGCTCC
** * * *
20493635 GGTGATGGTGCCCTG-CGAAGAAAAAATGCAGCACCAGC-CTATGCCCGAGCCCAGCATCTGCTG
648 GACGATGGTGCCCCGACGAAG-AAAAATGCGGCACCAGCAC-ATGCCCGAGCCCAGCATGTGCTG
* * * *
20493698 TCGCGACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATG
711 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* *
20493763 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGTGGCAG
776 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * ***
20493828 GATGCGCAAGCCAGGGATCGATGGGGTCCCCCTCTACGTGTTGCCGATCCTACTGTGG
841 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
*
20493886 CAACCCTCGGT-CGAGTCCGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 CAACCCTCGGTCCG-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
20493950 AACAAGCGGGTGGGCGGGCGGGCGGGTACTACGTCGGCCAGAGAGACGGTATGCGCAGGCCGTGG
65 AACGAGC----GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
20494015 ATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
126 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
20494080 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAAACGACTCAT
191 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * * *
20494145 TTTTTACTTTTCACGATTTCTAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTTGGAAGG
256 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * * *
20494210 AGTTTT-GCCCCAAACTAGGTAGACGGGATCCTTCTATTTTTGTTGGCATGCATAAAAAAATTCA
321 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
20494274 GCTAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCTCCATTTCAGACACT
386 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
20494339 TTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGTGTGTGAGTTCTCGA
451 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
20494404 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
516 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * ** * * *
20494469 GCACACTCCCCCGGCCCCCCTGATTGTCGAAACCCTAATGCCATCGATCAGGTTCTCTTGGGATG
581 GCACAC-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC-CGGCATG
* * * * *
20494534 CTCCGACAATGGTGCCCCGGCGAAGAGAAATGTGGCACCATCACATGCCCGAGCCCAGCATGTGC
644 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
20494599 TGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
709 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * ** * * * *
20494664 TG-ACTCCATATGCCTTAGTCAACCCACAAAATTAGCGTCCGGTCGCTCAGTCGACCAGAGGGGC
774 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * ** ** *
20494728 GGGATGCACAAGCTGGGGATCGG-CTAGGTCCCCTTCTGTGTGCTGTCGGCCCTGCTATCG
839 GGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * * * *
20494788 TAACCCTTGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* ** * *
20494853 ACGA----GCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACTAGATGCGTATGCCGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
20494914 TAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
*
20494979 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
20495044 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTTGGAAGGGGTT
261 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTT
* * **
20495108 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAATTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * * * *
20495173 GAAACTCAAACTGTACAAGCTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
20495238 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * * *
20495303 TGATGAGGGATAGGGGGCCTATATAAGGTCCAAGCACCAGCACCCATCACACATCATGTGTGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** * * * * *
20495368 ACCCCTCCCGGCATCCCTGATCGCCGAAACCCCAATGCCGCCTGTTAGGTTCTCCGATG-ATGCT
585 A-CCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG--GCATGCT
* * * * * *
20495432 CCGGCGATGGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGCCCTAGGCTAGCATGTGCTG
646 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
** * *
20495497 CAACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATA
711 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
20495562 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTTG-GGGCGCTCAGCCGGCAAGAGGGGTG
776 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-TGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * *** * * *
20495626 GGATGCGCAAGCCGAGGATCGGCCGAGTCCCCCTCAATGTGCTGTCGATCCAGCTACCA
840 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * ** *** * *
20495685 C-ACCCTCGGTCTGATTTGATCTT-GACTATTAATGAATTTCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
20495748 ATGACCGGACGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGTCGTGGA
66 ACGA---G-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* ** * *
20495813 TCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAAGCCATTTTTATA
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
20495878 TCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** * *
20495943 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-AGGATTTTTGAAAATTTTTTCAGAAGG
257 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGG
* ** *
20496007 ATTTTTGGCTTCAAACTTGGTAGATGTGATCCTTGTATGTTTT-TTGGCATGCACAAAAAAATTC
321 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTC
*
20496071 AGCTAAAAACTC-AATGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACA
385 AGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
20496135 CTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
449 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
** *
20496200 GAGGTTTTTTGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGT
514 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
20496265 GCCCACACCCCCCCGGCCCCCCCGATTG-CTTGAACCCCAATGTCGCCGGTCAGGTTCTCCGACG
579 GCGCACA-CCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC-
** ** * *
20496329 ATGCTTTGGTGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATG
641 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
20496394 TGCTGCCGCAA-CC-C--T-C-G---G----T---CT--G---G---TCCG-A-GCTTAGACTGG
706 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
20496433 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCACTCAGCCGGCCAGAGA
771 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
** * * * * * *
20496498 GGCAAGATGCGTAAGCCGAGGATCAGTCGGGTCCCCCTCTACGTGCTACCGATCTTGCTGCCA
836 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * * *
20496561 CAACCCTTGGTCCAGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** ** ** * *
20496626 ACGAGCAAGCGGGAAGGCGGGCACTACGCTTGTCAGAGAGACAGGATGCGCAAGCCGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
***
20496691 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * *
20496756 GTAAATTCGTACAATGGTCCCTTAAGCCTTCACGGGAAGTTTCATGGCAAGACGACTCGTTTTTT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
20496821 ATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTT
261 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
20496886 TGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGTATGCACAAAAAACTTCAGCTAA
326 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * * *
20496951 AAACTTGAAGTGTACAAGATTTTGTGGCCCTTTGAAAAAAGTGTCCCCATTTCAGACCCTTTAAA
391 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
20497016 GGTTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
456 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
20497081 GATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCTTCGCACATCATGTGCGCACA
521 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * * *
20497146 GCACCCCGGCCCACCCGATTGCCGGAACCCCAATGCCTCCGATCTGGTTCTCCGATG-ATGCTCC
586 -CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG--GCATGCTCC
* * *
20497210 GACGATGGTGCCCC-AGCGAAGAAAAATAG-GGCACCAGCACATGTCC-AACCCAGCATGTGCTT
648 GACGATGGTGCCCCGA-CGAAGAAAAAT-GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
20497272 CCGCAACCCTCGGTCCGGT-CGATCTTAGACTAAGGAATGAACTACGTATGCTTAGAGTGGGAAT
711 CCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
20497336 GAACACCGTATGCCTAAGTCAACCTACGAAACGAGGCGTGCGGGCG-TCAGCCGACCAAATTGCG
775 GAACTCCGTATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGCCAGA--GGG
* * * * * **
20497400 GCAGGATAAACGCTAACGCCGGGGATTC-AT-GGGT-CCCCTCTGCGTACTGCC-AACCCACTGC
837 GCGGGAT--GCGC-AA-GCCGGGGA-TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
20497461 CA
897 CA
* ** * * * * *
20497463 CAACCCTCGGTCCGCCATCTAATCTTAGACTAGGAATG-ACTCTGTATCCCTAAGGCAACCGATG
1 CAACCCTCGGTCCG--GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
20497527 AAACAACCGGGC-GGC--GC-AGC-TTACGGCCGCCCAGAGAGACGGGATGCGCAATCCTGTGGA
64 AAACGAGCGGGCGGGCGGGCGGGCACTAC-GCCGGCCAGAGAGACGGGATGCGCAAGCC-GTGGA
20497587 TCGATAGGG-GGTAGGTGGGTTTAGGCACATC-TCATATTTCTGC-TGCCAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * **
20497649 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTTATT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
20497714 TTTTATTTTTCACGATTTTTGAAACTTTTTTGGCGGTTCGAGAGTTTTTAAAAATTTTTTCGGAA
257 TTCTATTTTTCACGATTTTTGAAAC-TTTTT-ACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAA
*
20497779 GGAGTTTTGGCCCCAAACTTGGTAGATC-TCATCCTTGTATTT
319 GGAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATTT
20497821 NNNNNNNNNN
Statistics
Matches: 6534, Mismatches: 810, Indels: 308
0.85 0.11 0.04
Matches are distributed among these distances:
865 5 0.00
866 91 0.01
867 48 0.01
868 519 0.08
869 86 0.01
870 3 0.00
871 4 0.00
872 3 0.00
873 25 0.00
874 546 0.08
875 9 0.00
876 116 0.02
877 19 0.00
878 43 0.01
879 1 0.00
880 2 0.00
881 2 0.00
884 1 0.00
885 3 0.00
886 2 0.00
888 5 0.00
889 5 0.00
890 4 0.00
891 254 0.04
892 377 0.06
893 10 0.00
894 333 0.05
895 285 0.04
896 176 0.03
897 199 0.03
898 35 0.01
899 347 0.05
900 384 0.06
901 503 0.08
902 693 0.11
903 1345 0.21
904 41 0.01
905 8 0.00
906 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCATGCTCCGAC
GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
Found at i:20494675 original size:25 final size:27
Alignment explanation
Indices: 20494625--20494681 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
20494615 CTGGTCCGAT
*
20494625 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCATATGC
20494651 CTTAGACTGGGAATG-ACTCCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
20494677 CTTAG
1 CTTAG
20494682 TCAACCCACA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 9 0.31
26 20 0.69
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:20495550 original size:26 final size:26
Alignment explanation
Indices: 20495521--20495573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20495511 CCGATCCGAT
*
20495521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
20495547 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
20495573 C
1 C
20495574 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:20499181 original size:26 final size:26
Alignment explanation
Indices: 20499145--20499200 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
20499135 CTGGTTCGAT
*
20499145 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
20499171 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
20499197 CTTA
1 CTTA
20499201 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:20500078 original size:26 final size:26
Alignment explanation
Indices: 20500049--20500100 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20500039 TCCGATCTTG
*
20500049 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
20500075 GACTGGGAATGAACTCCATATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
20500101 AGTTAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
GACTGGGAATGAACTCCATATGCTTA
Found at i:20500579 original size:900 final size:896
Alignment explanation
Indices: 20498821--20501376 Score: 3412
Period size: 900 Copynumber: 2.9 Consensus size: 896
20498811 NNNNNNNNNN
*
20498821 TTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGT
1 TTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
20498886 AAAATC-CAAAATGCTCTTTAAGAGGGTGTGAGTTCGCGAGGTTTGATGAGGCATAGGGGGCCAA
66 AAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* * *
20498950 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCTCGG-CCCCCCGATT
130 TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATC
** * **
20499014 GCCGGAACCCCAATACCGTCGGTCAGGTTCTCCTGTGATGCTCTGACGATGGTGCCCCGGTGAAG
194 GCCGGAACCCCAATGTCGTCGGTCAGG-TCTCC-GT-ATGCTCCGACGATGGTGCCCCGACGAAG
* * * * * * *
20499079 AAAAATACGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCCCTAACCCTTGGTCTGGTTCGA
256 AAAAATGCGGCACCAGCACATGCACGAGCCTAGCATGTGCTGCGC-AACCCTCGGTCCGGTCCGA
*
20499144 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCTTAAGTCAACC
320 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACC
** *
20499209 CACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGGGCGGGATGCGCAAGCCGGGGATCGATCG
385 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * **
20499274 AGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCAATCCAATCTTAGACTGG
450 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGATCCAATCTTAGACTGG
* * * * * * * * *
20499339 GAATGAACTTCGTATACCTAAGCAAACTGACGAAACCAACGGGTGGGCAAGCGGGCGGGCACTGC
515 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-CAGCAGGCGGG--GGCGGGCGGGCACTAC
**
20499404 GTCGGCCAGAGAGATGGGATGCGC--GCCGTGGATCGATAAAGTGGTAGGTGGGTTTAGGCACAT
577 GTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
**
20499467 CTTCATATTTCTGTGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
642 C-TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * **
20499531 CTTCGCGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCAAAAATTTTTA
706 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTCCACGATTTTCAAAAATTTTTA
** * *
20499596 CGGTTGAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
770 CAATTGAAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACGTGGTAGACGTGATCC
20499661 TTTGTATTTTTATTGGCATG-CACAAAAAAATTCAGCTAAAAA-CTCGA-ACTGTACAAGATT
835 TTTGTATTTTTATTGGCATGCCACAAAAAAATTCAGCTAAAAACCTC-ACACTGTACAAGATT
* * * *
20499721 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTAT
1 TTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
20499786 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCAAGGTTTGATGAGGGATAAGGGGCCAAT
66 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
20499851 ATAAGGGCCAAGTACCAGCAGCCATTGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATCAC
131 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
* * *
20499916 TGGAACCCCAATGTCGTCGGTCAGGATCTCCGGTAATGCTCCGGCGATGGTGCCCCGACGAAAAA
196 CGGAACCCCAATGTCGTCGGTCAGG-TCTCC-GT-ATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * * *
20499981 AAATGCAGCACCAGCACATGCAAGAGCCTAGCATGTACTGCTGCAACCCTCAGTCCAGTCCGATC
258 AAATGCGGCACCAGCACATGCACGAGCCTAGCATGTGCTGC-GCAACCCTCGGTCCGGTCCGATC
* * * *
20500046 TTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCTTAAGTTAACCAA
322 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCA
* * * * *
20500111 TGAAATGAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGATCGG
387 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGCGGGATGCGCAAGCCGGGGATCGATCGG
* * * *
20500176 GTCCCCCTCTACGTGCTGCAGATACTACTGCCGCAACCCTC-GATCTGATCCAATCTTAGACTGG
451 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCTGATCCAATCTTAGACTGG
* *
20500240 GAATGAACTCCGTATGCCTAAGCCAACCGACCAAACGAGCAGGCGGATGGGCGGGCAGGCACTAC
515 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AGCAGGCGG--GGGCGGGCGGGCACTAC
*
20500305 GTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACAT
577 GTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
20500370 CATCATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTAAATTCATTATAATGGTCCCTTAA-
642 C-TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA-TACAATGGTCCCTTAAG
* * ** * *
20500434 CCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCCATGATTTTTTAAACTTTTTG
705 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCCACGATTTTCAAAAATTTTTA
* *
20500499 CAATTCG-AGA-TTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACGTGGTTGATGTGATC
770 CAATT-GAAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACGTGGTAGACGTGATC
*
20500562 C-TTGTATTTTT-TTGGCATGCCACAAAAAAATTCAGCTAAAAACCTCACAGTGTACAAGATT
834 CTTTGTATTTTTATTGGCATGCCACAAAAAAATTCAGCTAAAAACCTCACACTGTACAAGATT
* * * *
20500623 TTGTGACCATTTCAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGACAGTAAACCTGT
1 TTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
20500688 -AAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
66 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
20500752 ATAAGGGCCAAGTACCAGCACCCATTGCACATCACGTGCGCACACCCCCTGGCACCCCCGATCGC
131 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
* * * *
20500817 CGGAACCCC-A-GT-G-CCG-CCGGT-TACGT-T-CTCCAACGATGGTGCCCCGACGAAGAAAAA
196 CGGAACCCCAATGTCGTCGGTCAGGTCTCCGTATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* *
20500874 TGCGGCACCAGCACATGCTCGAGCCTGGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
261 TGCGGCACCAGCACATGCACGAGCCTAGCATGTGCTG-CGCAACCCTCGGTCCGGTCCGATCTTA
* * * *
20500939 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCACAA
325 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGA
* * * *
20501004 AACGAGCGTGCGGGGCGCTCAGCCGGCCAGAGGACGGGATGCGCAAACTGGGGATCG-GCTGGGT
390 AACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGT
* * * * * * * *
20501068 CCCCCTCTGCGTGCTACCGATCCTGCTACTGCAACCTTCAGTCTGGTGCGATCTTTATACTGGGA
453 CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGATCCAATC-TTAGACTGGGA
* * * * *
20501133 TTGAACTCCGTATG-TTGAAGCCAACCGATGAAAC-G-A-GC--GGGCGGGCGGGCACTACGCCA
517 ATGAACTCCGTATGCCT-AAGCCAACCGACGAAACAGCAGGCGGGGGCGGGCGGGCACTACGTCG
*
20501192 GCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCA
581 GCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCA
*
20501257 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CC-TAAGCCTTCA
646 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
20501320 CGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTCCAAAAATT
711 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTCCACGATTTT-CAAAAATT
20501377 GGGAATGAAC
Statistics
Matches: 1455, Mismatches: 176, Indels: 68
0.86 0.10 0.04
Matches are distributed among these distances:
879 3 0.00
880 39 0.03
881 19 0.01
882 48 0.03
883 78 0.05
887 2 0.00
888 1 0.00
889 2 0.00
890 216 0.15
891 58 0.04
893 2 0.00
894 2 0.00
895 1 0.00
896 3 0.00
897 2 0.00
898 1 0.00
899 6 0.00
900 373 0.26
901 320 0.22
902 123 0.08
903 84 0.06
904 57 0.04
905 15 0.01
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
TTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
CGGAACCCCAATGTCGTCGGTCAGGTCTCCGTATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCACGAGCCTAGCATGTGCTGCGCAACCCTCGGTCCGGTCCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACAGCAGGCGGGGGCGGGCGGGCACTACGTCGGCCAG
AGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCATATTT
CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTCCACGATTTTCAAAAATTTTTACAATTGAAGAT
TTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTTGTATTTTT
ATTGGCATGCCACAAAAAAATTCAGCTAAAAACCTCACACTGTACAAGATT
Found at i:20502273 original size:26 final size:27
Alignment explanation
Indices: 20502244--20502297 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
20502234 CTGATCCGAT
20502244 CTTAGACTGGGAAT-GAACTCCGTATG
1 CTTAGACTGGGAATCGAACTCCGTATG
20502270 CTTAGACTGGGAATCGAACTCCGTATG
1 CTTAGACTGGGAATCGAACTCCGTATG
20502297 C
1 C
20502298 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGAATCGAACTCCGTATG
Found at i:20504045 original size:26 final size:26
Alignment explanation
Indices: 20504009--20504060 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20503999 CGGTCTGATG
20504009 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
20504035 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
20504061 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:20504943 original size:26 final size:26
Alignment explanation
Indices: 20504907--20504959 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20504897 CTGGTCCGAT
20504907 CTTGGACTGGGAATGAACTCCATATG
1 CTTGGACTGGGAATGAACTCCATATG
*
20504933 CTTGGACTGGGAATGAACTCCGTATG
1 CTTGGACTGGGAATGAACTCCATATG
20504959 C
1 C
20504960 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTGGACTGGGAATGAACTCCATATG
Found at i:20505371 original size:903 final size:903
Alignment explanation
Indices: 20501376--20506031 Score: 6148
Period size: 903 Copynumber: 5.2 Consensus size: 903
20501366 TTCCAAAAAT
* * *
20501376 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGAGCTCAGTCGGCTAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
* * * * * * * * *
20501441 AGGGGCAGGATGCGCAAG-TCAGGGATCGATCGGGTCCTCTTCTGTGTGCCGCTGATCCTG-TCG
66 AGGGGCGGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-A
* * * * *
20501504 CCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACCGAC
129 CCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
*** * * * * *
20501569 GAAACGAATGGGCAGGTGGGGCGGGTGGGCACTACGTCGGCGATAGAGATGGGGATGCGCAAGCC
194 GAAACGAGCAGGCAGG-CGGGCGGGTGGGCACTACGCCGGCCAGAGAGA-CGGGATGCGCAAGCC
*
20501634 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGCATGCTAATGCCATT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATT
20501699 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
321 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** * *
20501764 CTCAATTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
386 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTG
* * * *
20501829 GAAGGATTTTTCGCCCC-AACTTGGTAGACGTGACTCCTTGTATTTTTGTTAGCATGCACAAAAA
451 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA-TCCTTGTATTTTTTTTGGCATGCACAAAAA
*
20501893 AATTTAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
515 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
20501957 GACACTTTAATGGCTA-TGGCAACAAACCTATAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGT
580 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
20502021 T-TCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCAAT-GCACAT
645 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCACACAT
* * *
20502084 CATGTGCGCACACCCACCCCCGG-CCCCCGATC-ACCGAACCCCAATGCCGCCGGTCAGGTTCTC
709 CATGTGCGCACA-CC-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * ** * *
20502147 CGATGATGCTCCAGCGATGGTGCCCCGGTGAAG-AAAATGCATCACCAGCACATGCCCGAGCCTA
772 CGATGATGCTCCGGCGACGATGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* *
20502211 GCATGTGCTGCCGC-ACCCTCCG-TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
837 GCATGTGCTGCCGCAACCCT-CGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
20502274 GAC
901 GAC
* * *
20502277 TGGGAATCGAACTCCGTATGCCTAAGTCAACCCACGAAAAAGAGCATGCGGGCGCTCAGCCGGCC
1 TGGGAAT-GAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGTCGGCC
* * * * * *
20502342 AAAGGGGCGGGATGTGCAAG-TCGGGGATTGGTCAGGTCCCCCTCTGCGTTCTGCTGATCCTGCT
64 AGAGGGGCGGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * * * * * *
20502406 GCCAGAACCGTTGGTCCAGCCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
128 ACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* * *
20502471 CGAAACGAGC-GG-A---GGGC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCA
193 CGAAACGAGCAGGCAGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
20502527 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
20502592 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
20502657 CGTTTTCTA-TTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGAATTTTTAAAATTTTTTTGGA
388 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGA
*
20502721 AGG-GTTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
453 AGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
*
20502785 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCTCATTTCAGA
517 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
20502849 CACTTTAATGGCTACTGGCAGCAAACCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
582 CACTTTAATGGCTACTGGCAGCAAA-CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
20502914 CTCGAGG-TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
* * *
20502978 TGTGCGCACAGCCCCCCCGAG-----CG--C-T-AGAA-CCCAATGCCGTCGGTTAGGTTCTTCG
711 TGTGCGCACA-CCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * * **
20503033 ACGATGCTCCGGCGATGGTGCCGCGGCGAAGAAAAATGTGGCA-CAAGCACATGCCCGAGCAAAG
774 ATGATGCTCCGGCGACGATGCCCCGGCGAAGAAAAATGCGGCACCAA-CACATGCCCGAGCCCAG
* *
20503097 CATGTGCTGCCGTAACCC-C---C-GGTCCGGTC-----C-------G-A-T-C--A----TAGA
838 CATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
20503136 C
903 C
* * * *
20503137 TGGGAATGAACTCCGTATGACTCAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
* * * * *
20503202 AGGGGCGAGATGCGCAACCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
66 AGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
** * * *
20503267 GGAACCCTCGTTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-TCGATG
131 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACG
* * * * ** *
20503331 AAACGAGCAAGCGGGCGGGCGAGTGGGCCCTACGCCGGTTAGAGAGACGGGATACGCAAGCCGTG
195 AAACGAGCAGGCAGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * * *
20503396 GATCGATAGGGTGGTAGGTCGATTTAGGTACATTTTCATATTTCTACGTGCCAATGCCATTTTTA
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
20503461 TGGCTTCG-AAATTCGTACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGATGACTC
325 TGGCTT-GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** * * *
20503525 GTTTTCTATTTTTCATGATTTTCAAAAC-TTTTGCAGTTC-AGGATTTTTTAAAATTTTTTCGAA
389 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGGA
* * * * * * *
20503588 AGTACTTTT-TCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATGGACAAAAAAAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
*
20503652 TCAGCTAAAAACTC-AGAGTGTACAAGATTTTGTTACCATTTGAAAAAAAGTGTCCCCATTTCAG
518 TCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAG
* * **
20503716 AAACTTTAATGGCTACAGAAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
581 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * **
20503781 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGTCAAGTACCAGCACCCATTGCACATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
*
20503846 TGTGCGCACGCCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
711 TGTGCGCACACCCCCC-CGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * * * *
20503911 ATGATGCCCCTGTGATCG-TGCCCCGGCGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAT
774 ATGATGCTCCGGCGA-CGATGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
** * * *
20503975 CATGTGCTGCCATAACCCTC-AGTCCGGTCTGATGTTAGACTGGGAATGAACTCCATATGCTTAG
838 CATGTGCTGCCGCAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
20504039 AC
902 AC
* * ** * *
20504041 TGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCAAGTGCTCAGTCGGCCAT
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
* * * * *
20504106 AAGGGCTGGATGCGCAAGC---CGATC-GACTGGGTCCCCCTCTGCGTGCTGTCGATCCTG-TCA
66 AGGGGCGGGATGCGCAAGCTGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-A
* * *
20504166 CCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACTGAC
129 CCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
* * ** * * *
20504231 GAAACGTGAATACGGGCAGGCGGGTGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
194 GAAACGAGCAGGCAGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
20504296 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-TTCTCAATGCCATTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC-CAATGCCATTTT
20504360 TATGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
323 TAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
20504425 TCGTTTTCTA-TTTACATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGA
387 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGG
* *
20504489 AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGGTCCTTGTATTTTTTTTGGCATGCACAAAAAAA
452 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* * *
20504554 TTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
517 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
20504619 CACTTTAATTGCTACTAGCAGCAAA-CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTG
582 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
20504683 TAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCAT
647 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
*
20504748 GTGCGCACACCCCCCCGGCCCTCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT
712 GTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAT
* * * * *
20504813 GATGCTCCGGCGACGATGCCTCGACGAAGAGAAATACGGCACCAACACAT-CCCAAGCCCAGCAT
776 GATGCTCCGGCGACGATGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT
* * * *
20504877 GTGCTGTCGCAACCCTTGATCTGGTCCGATCTTGGACTGGGAATGAACTCCATATGCTTGGAC
841 GTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * *
20504940 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTTAGTCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
* * *
20505005 AGGGGCGGGATGCGCAAGCTGGGGATTGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACC
66 AGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * ** *
20505070 ACAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCTATATGCCTAAGCCAACTGACAA
131 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
* * ** * * * *
20505135 AACGAGCGGGGCAGGTGGGCGGGCAGGCACTATGCCGACCAGAGAGACGGGATGCACAAGCCATG
196 AACGAGC-AGGCAGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
20505200 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCACTTTTA
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
20505265 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
*
20505330 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGAATTTTTAAAATTTTTTTGGAAG
390 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAG
* *
20505395 G-GTTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCGCAAAAAAATT
455 GAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
*
20505459 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGACAAAAGTGTCCCCATTTCAGACA
519 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
20505524 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
584 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
**
20505589 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
649 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
* * * *
20505654 GCGCACA-CCCCCCGGCCCCCACGATCGGCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA
714 GCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGA
* * * * *
20505718 TGCTCCGGCGACGATGCCCCGACGAAGAGAAATACGGCACCAACACAT-CCCAAGCCCGGCATGT
778 TGCTCCGGCGACGATGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGT
* * *
20505782 GCTGTCGCAACCCTCGATCTGGTCCGATCTTGGACTGGGAATGAACTACATATGCTTAGAC
843 GCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* *
20505843 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGTCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
* * * * *
20505908 AGGGGCGGGATGCGCAAGCCGGGGATTGGTCAGGTCCCCCTCTGCGTGCTGCCAATCCTACTACC
66 AGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * * * * *
20505973 ATAACCCGCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAAC
131 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
20506032 CCACGAAATG
Statistics
Matches: 3329, Mismatches: 329, Indels: 192
0.86 0.09 0.05
Matches are distributed among these distances:
858 141 0.04
859 27 0.01
860 12 0.00
863 4 0.00
864 1 0.00
865 1 0.00
866 90 0.03
867 252 0.08
868 124 0.04
869 1 0.00
873 2 0.00
875 1 0.00
876 2 0.00
877 3 0.00
878 87 0.03
879 4 0.00
881 7 0.00
882 2 0.00
883 6 0.00
884 53 0.02
885 38 0.01
886 5 0.00
888 3 0.00
890 133 0.04
891 154 0.05
892 162 0.05
893 27 0.01
895 1 0.00
896 1 0.00
897 5 0.00
898 1 0.00
899 145 0.04
900 90 0.03
901 338 0.10
902 344 0.10
903 875 0.26
904 187 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (903 bp):
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
AGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
AACGAGCAGGCAGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
GCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGC
TCCGGCGACGATGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT
GCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
Found at i:20506201 original size:159 final size:159
Alignment explanation
Indices: 20505836--20506185 Score: 466
Period size: 159 Copynumber: 2.2 Consensus size: 159
20505826 ACTACATATG
* * * * *
20505836 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGACCGTGCGGGCGCTCAGC
* * **
20505901 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCAGGTCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCAATCC
* * *
20505966 TACTACCATAACCCGCGGTCTGGTCCGAT
131 TACGACCACAACCCGCAGTCTGGTCCGAT
* * *
20505995 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGACCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGACCGTGCGGGCGCTCAGC
* * * * *
20506060 CGGCCAGAGGGGCGAGATGCGCAAGTCGGGGATCGACCGGGTCCCCTTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCAATCC
* * * *
20506125 TGCGATCGCAACCCTCAGTCTGGTCCGAT
131 TACGACCACAACCCGCAGTCTGGTCCGAT
* *
20506154 CTTGGACTAGGAATGAACTCCGTATGCCTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
20506186 CCAGCCGAGG
Statistics
Matches: 163, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
159 163 1.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGACCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCAATCC
TACGACCACAACCCGCAGTCTGGTCCGAT
Found at i:20507153 original size:26 final size:26
Alignment explanation
Indices: 20507115--20507167 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20507105 CTGGTCCCAT
20507115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20507141 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20507167 C
1 C
20507168 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20508056 original size:26 final size:26
Alignment explanation
Indices: 20508020--20508071 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20508010 CGGTCTGATT
*
20508020 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20508046 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20508072 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20508759 original size:903 final size:903
Alignment explanation
Indices: 20507002--20512727 Score: 7711
Period size: 900 Copynumber: 6.4 Consensus size: 903
20506992 CCCCTCTGCT
* ** ** * * *
20507002 CCGGTGAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGCAGCACTAGCT
1 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * *
20507067 CATGCCCGAACCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCCATCTTAGACTGGGAATGAA
66 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * *
20507132 CTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGG
131 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * ** * *
20507197 GTGCTCAGCCGGCCAAAGGGGCTGGATGCGCAAGTCGGGGATCGACCGGGTCCCTCTCTGCGTGC
196 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGC
* * * * *
20507262 TGCCGATCTTGTTGCTGCAACCCTTGGTCCGGTCCGATCTTAGAC-TGGAAATGAACTTCGTATG
261 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTTGG-AATGAACTCCGTATG
* * * *
20507326 CCTAAGCCAATCGACGAAACGAGCATGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACG
325 CCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACG
*
20507391 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTT
390 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* *
20507456 GCTAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
455 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* ** **
20507521 ATGGCAAGATGACTCAATTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT
520 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTT
* * * * *
20507586 AAAATTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGTAAAAGTGATCCTTGTATTTTTGTTGGT
585 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* ** *
20507651 GTGCGTAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGACAAAAGTG
650 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
20507716 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTACAATCTCAAATGCTCTTTAAG
715 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
20507781 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
780 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
20507846 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAAGCCTAATGTCG
845 CATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCG
* ** * *
20507906 CCGGTTAGGCGCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCA
1 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * * *
20507971 CAAGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCTGATTTTAGACTGGGAATGAA
66 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * *
20508036 CTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGGGTGTGG
131 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * ** **
20508101 GTGCTCGGCCGGCCTGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTAGGTGTGC
196 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGC
** * * * *
20508166 TATCGATCCTACTGCCGTAACCCT-GGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATGC
261 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCGTATGC
* * * *
20508230 CTAAGCCAACCAACGAAACGAGCAGGCGGGCGGGCGGGTGGGCACTATGTCGGCCAGAGAGACAG
326 CTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGG
* * *
20508295 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCGCATCTTCATATTTCTGCGTG
391 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
** * * *
20508360 CCAATGATAGTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
456 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
20508425 TGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCGAGATTTTTTA
521 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTA
* * *
20508490 AAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCA
586 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
20508555 TGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
651 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
20508620 CCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
716 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * ** * *
20508685 GGATGTGAGTTCTTGAGGTTTGATGAGGGATATAGGGCCAGTATAAGGGCCAAGTACTAGCACCC
781 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
** *
20508750 ATCGCACATCATGTGCGCACACCCCCAAG-CCCCCCGATCGTCGGAACCCCAATGCCG
846 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCG
* * * *
20508807 CCAGTCAGGTTCTCTGGC-ATTGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
1 CCGGTCAGGTTCTCCGACGA-TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * * *
20508871 ACATGCCTGAGCCCAGCATGTGCTGCCGTAATCCTCGGTCTGGTCCGATCTTAGAATGGGAATGA
65 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * * *
20508936 ACTCCGTATGCCTAGACCGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGTGTACG
130 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * *
20509000 GGCGCTCAGCCTGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCAGGTCTCCCTCTGCGTG
195 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTG
* ** * ** *
20509065 CTGCCAATCCTGCTATCGCAACCCTCAGTTTGGTCCAATCTTAGAC-TGGAATGAACTCCGTATG
260 CTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCGTATG
* * * *
20509129 CCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGTGTGGGCACTACGTCGGCCAGAGAGACG
325 CCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACG
*
20509194 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCAT
390 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* *
20509259 GCCAATGCCATTTTTATGGCTTTTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
455 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* *
20509324 ATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCGAAACTTTTTGA-GGTTCGAGATTTTT
520 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT-ACGGTTCGAGATTTTT
* * *
20509388 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTCGTATTTTTATTGG
584 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
20509453 -ATGCACAAAAAAATTAAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
649 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * *
20509517 GTCCCAATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAA
714 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
20509582 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTAGCAGCAC
779 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
20509647 CCATCGCACATCATGTGCGCACA-CCCCCGGCCCTCCCGATCGCCGGAACCCTAATGCCA
844 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCG
** *
20509706 CCGGTCAGGTTCTCCGGGGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCA
1 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * *
20509771 CATGCCCGAACCCAGCATGTGCTGCAGCAACCCTCGGTCCGGTCCGATCTTATACTGGGAATGAA
66 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * * * *
20509836 CTTCGTAAGCTTAGACTTGGAATGAATTCCGTATACCTAAGTCAACCCACGAAACGAGTGTGCGG
131 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * *
20509901 GCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGACCGGTCGAGTCCCCCTCTGCGTGC
196 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGC
* * *
20509966 TGCCGATCCTGCTGCCACAACCCTCGGTCTC-GTTCGATCTTAGACTGGGAATGAACTCCGTATG
261 TGCCGATCCTGCTGCCGCAACCCTCGGTC-CGGTCCGATCTTAGACTTGGAATGAACTCCGTATG
*
20510030 CCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGC----GGGCACTACGCCGGCTAGAGAGACG
325 CCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACG
* * * * * *
20510087 GGATGCGCAAGTCG-GGAATCGATAGGGTGGTGGGTGGATTCAGACACATCTTCATATTTCTACA
390 GGATGCGCAAGCCGTGG-ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
20510151 TTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTT
454 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
** ** *
20510216 CATGGCAAGACGACTCGTTTTCTATTTTTCTTGATTTTTGAAACTTTTTGCGGTTTCG-GATTTT
519 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGG-TTCGAGATTTT
* * *
20510280 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTTGTAGACATGATCCTTGTATTTTTGTTG
583 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
20510345 GCATGCACAAAAAAATTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
648 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
20510410 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTG
713 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
20510475 AGGGGGTGTGAGTTC-CTGAGGTTTGATG-GGAGATAGGGGGCCAATATAAGGGCCAAGTACCAG
778 AGGGGGTGTGAGTTCTC-GAGGTTTGATGAGG-GATAGGGGGCCAATATAAGGGCCAAGTACCAG
* ** * * * * *
20510538 CACCCATCGCACATCATATGCAAACACCCCCCGGCCCCCTCGATCATTGAAACCCTAATGCTG
841 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCG
* *
20510601 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCA
1 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
*
20510666 CATGCCCGAGCCCAGCATGTGCTGCTGCAA-CC-C--T-CGGT-C---C---G--T-----T---
66 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * *
20510709 CT--G-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGG
131 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * *
20510770 GCGCTCAACCGGCAAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGC
196 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGC
* * *** *
20510835 TGTCC-ATCCTGTTGCCACAACCCTCGGTCCAAACCAATCTTAGAC-TGAGAATGAACTCCGTAT
261 TG-CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTTG-GAATGAACTCCGTAT
* * *
20510898 GCCCTAAGCCAACCGACGAAA--TG-A-GCGGGC-GGC---CGGGCACTACGTCGGCCAGAGAGA
324 G-CCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGA
*
20510955 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGC
388 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
20511020 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTT
453 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * *
20511085 TTATGGCAAAACGACTCGTTTTCTACTTTTCACGATTTCCAAAACTTTTTACAGTTC-AGGATTT
518 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTT
* * * * *
20511149 TTTAAAATTTTTTCGAAAGGAGTTTT-GCCCCAAACTAGGTGGACGGGATCCTTCTATTTTTGTT
582 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
20511213 GGCGTGCACAAAAAAATTCAGCTAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
647 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * * *
20511278 ATGTCTCCATTTCAGACACTTTAACGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCATT
712 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
20511343 AAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGT
777 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* *
20511407 ACCCATCGCACAACATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCG
842 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCG
* * * * * ** * * *
20511468 TCGGTCAGGTTTTCCGATGATTCCCCGGTGATGGTGCCCTGGCGAAGAAAAATGCAGCACCAGC-
1 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * * *
20511532 CTATGCCCGAGCCCAGCATCTGCTGTCGCGACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGA
66 C-ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* *
20511597 ACTCCGTATGCTTGGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
130 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * ** * **
20511662 GGCGCTCAGCCGGCCAGAGTGGCGGGATGCGCAAGCCAGGGATCCATGGGGTCCCCCTCTACGTG
195 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTG
* * * * * * *
20511727 TTGCCGATCCTACTGTCGTAAGCCTCGGTCGGGTCC-AGTCTTAGACTGGGAATGAACTCCGTAT
260 CTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGA-TCTTAGACTTGGAATGAACTCCGTAT
* * * * * * *
20511791 GCCTAAGCCGAA-CGACGAAATGAGCGGGTGGGTGGACGGGTAGGTACTACGCCGGCCAGAGAGA
324 GCCTAAGCC-AACCGACGAAACGAGCAGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGA
* *
20511855 CGGGATGCGCAGGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGC
388 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
20511920 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTT
453 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * *
20511985 TTATGGCAAAACGACTCGTTTTCTACTTTTCACGATTTCCAAAACTTTTTACAGTTC-AGGATTT
518 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTT
* * * * *
20512049 TTTAAAATTTTTTCGAAAGGAGTTTT-GCCCCAAACTAGGTGGACGGGATCCTTCTATTTTTGTT
582 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
20512113 GGCATGCACAAAAAAATTCAGCTAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
647 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * * *
20512178 ATGTCTCCATTTCAGACACTTTAACGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCATT
712 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
20512243 AAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
777 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
20512308 ACCCATCGCACATCATGTGCGCACACTCCCCCGGCCCCCCTGATTGCCGAAACCCCAATGCCA
842 ACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCG
* * * * * *
20512371 TCGATCAGGTTCTCTCG-GGATGCTCCGACGATGGTGCCCCGACGAAGAGAAATGTGGCACCATC
1 CCGGTCAGGTTCTC-CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* *
20512435 ACATGCCCGAGCCCAGCATGTGCGGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
65 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * ** **
20512500 ACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTTAGTCAACCCATAAAATTAGCGTGCG
130 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * *
20512565 GTCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCTGGGGATCGG-CTAGGTCCCCTTCTGTGT
195 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGTGT
* ** ** ** * * * *
20512629 GCTGTCGGCCCTGCTATCATAACCCTTGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
259 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCGTAT
*
20512694 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
324 GCCTAAGCCAACCGACGAAACGAGCAGGCGGGCG
20512728 AGCAGTACAT
Statistics
Matches: 4279, Mismatches: 469, Indels: 149
0.87 0.10 0.03
Matches are distributed among these distances:
866 1 0.00
867 99 0.02
868 43 0.01
869 363 0.08
870 245 0.06
871 4 0.00
872 4 0.00
873 3 0.00
876 2 0.00
879 1 0.00
881 2 0.00
886 2 0.00
889 3 0.00
890 4 0.00
891 2 0.00
892 23 0.01
893 408 0.10
894 205 0.05
895 118 0.03
896 4 0.00
897 12 0.00
898 5 0.00
899 362 0.08
900 1005 0.23
901 246 0.06
902 15 0.00
903 844 0.20
904 254 0.06
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (903 bp):
CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGC
TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGG
GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTA
AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCG
Found at i:20508951 original size:26 final size:25
Alignment explanation
Indices: 20508922--20508974 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
20508912 GGTCCGATCT
*
20508922 TAGAATGGGAATGAACTCCGTATGCC
1 TAGAACGGGAATGAACT-CGTATGCC
*
20508948 TAGACCGGGAATGAACTCGTATGCC
1 TAGAACGGGAATGAACTCGTATGCC
20508973 TA
1 TA
20508975 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (25 bp):
TAGAACGGGAATGAACTCGTATGCC
Found at i:20512513 original size:26 final size:27
Alignment explanation
Indices: 20512484--20512541 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
20512474 CTGGTCCGAT
20512484 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
*
20512510 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
20512537 CTTAG
1 CTTAG
20512542 TCAACCCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:20513795 original size:26 final size:26
Alignment explanation
Indices: 20513766--20513818 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20513756 CCGATCCGAT
20513766 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20513792 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20513818 C
1 C
20513819 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20515574 original size:26 final size:26
Alignment explanation
Indices: 20515545--20515597 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20515535 CCGGTCCGAT
*
20515545 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
* *
20515571 CTTAGAGTGGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
20515597 C
1 C
20515598 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:20517193 original size:26 final size:26
Alignment explanation
Indices: 20517157--20517209 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20517147 CTGGTCTGAT
*
20517157 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
*
20517183 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
20517209 C
1 C
20517210 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:20518078 original size:26 final size:26
Alignment explanation
Indices: 20518049--20518101 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20518039 CCGGTCTGAT
*
20518049 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20518075 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20518101 C
1 C
20518102 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20518249 original size:892 final size:891
Alignment explanation
Indices: 20516418--20520022 Score: 4777
Period size: 892 Copynumber: 4.1 Consensus size: 891
20516408 GCCCAGCATA
* * ** * *
20516418 TGCTGCCGCAACCCTCAGTCTAGTCCGATCTTTCACTGGGAATAAACTTCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
20516483 CCGACGAAACGAGCATGCAGGCGGGCACTACGCCAGCCAGAGAGACGGGATGTGCAAGCCGTGGA
65 CCGACGAAACGAGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGA
** * * *
20516548 TCGATAGGGTGGTAGGTGGGTTTAGGTGCATCTTTAAATTTCTGCATGCCAATGCCATTTTTATG
126 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* *
20516613 GCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTT
191 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * *
20516678 TTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGG
256 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA
* **
20516743 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGCCATGC-GTAAAAAATTTCA
321 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTT-A
* * *
20516807 GCTAAAATCTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACT
385 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
20516872 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTGTCGA
450 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* * * *
20516937 CGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGC
515 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* * * *
20517002 GCACACCCCC-CGGCCCCCCCGATCGCCGAAACCCTAATGCCGTCGGTCAGGTTCTCCCGGGATG
580 GCACACCCCCTCGGCCCCTCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATG
* ** *
20517066 CTCCGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCATCACATGCCCGAGCCCAGCATGTGC
645 CTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
20517131 TGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGAA
710 TGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
20517196 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGT
775 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * * *
20517261 GAGATGCCCAAGCCGAGGATCGGCTGGGTCCCCCTTTGCTTG-T-TGCTGATCT
840 GGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTACGTGCTAT-C-GATCC
*
20517313 TGCTGCCACAACCCTCGGT-TCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCACAACCCTCAGTCT-G-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
20517377 ACCGACGAAACGAGCGGGCGGGCACTACGCCGGCCAAAGAGACGAGAT-TCGCAAGCCGTGTATC
64 ACCGACGAAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGT-GCAAGCCGTGGATC
* *
20517441 GATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
128 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* * *
20517506 CTCTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTT
193 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
20517571 ATATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTAGAAGGATT
258 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGT
* * * * *
20517636 TTTGGCCCCAAGCTTGGTCGACGTGATCCTTGTATTTTTTTTGGCAAGCACAAAAAAATTTAGCT
323 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCT
*
20517701 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-AAAAAAGCGTCCCCATTTCAGACACTTTA
388 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
20517765 ATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
* * *
20517830 TTGATGACGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
* ***
20517895 CACCGCCCTCGGCCCCTCCAATCGCCGAAACCCCAATGCTACCGGTCAGGTTCTCCAGCGATGCT
583 CACC-CCCTCGGCCCCTCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCT
* * * *
20517960 CTGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCTAGCCCAGCATGTGCTA
647 CCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * *
20518025 TCGCAACCCTCAATCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTAGGAATG
712 CCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* *
20518090 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGG
777 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
*
20518155 GATGCGCAAGCCGGGGATCAACTGGGTCCCCCTCTACGTGCTATCGATCC
842 GATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTACGTGCTATCGATCC
** * * *
20518205 TGCTGCCACGGCCCTCAGTCCTGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGT-CTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
20518270 CCGACGAAACGAGCGGACGGGCGGGCGGGCACTACACCGGTCAGATAGACGGGATGCGCAAGCCA
65 CCGACG-AA--A-C-GA---GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCG
* *
20518335 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCCACATGCCAATGCCATTTT
122 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
20518400 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
187 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
20518465 CATTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGAGATTTTTTAAAATTTTTTTGGA
252 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGA
* * *
20518530 AGGATTTTTGGCCCCAAACTTGGTAGGCATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
317 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
20518595 TCAAG-AAAAAAATCG-AGATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCGCCATTTCAG
382 T-TAGCTAAAAACTCGAAG-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
20518658 ACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GAGGTGAGAGTT
445 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
20518722 CTCAAGGTTTG-TGAGGGATAGGGGGCCAATATAACGGCCAAGT-CCTAGCACCCATCACACATC
510 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-AGCACCCATCACACATC
* * * * * *
20518785 ATGTGCGCACACCCCTTCGGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGCCAGGTTATCCG
574 ATGTGCGCACACCCCCTCGGCCCCTCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCA
* * * * * ** * *
20518849 GTGATGCTCCGACGATGGCGCCCCGGCAAAGAAAATTGTGACACCAGCACATGCTCGAGCCCAGC
639 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * *
20518914 ATGTGCTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
704 ATGTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
20518979 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTCAGCCAGCTAG
769 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
** * ** * * * * * * *
20519044 AGGGGCATGATGTGCAAGCCATGGATCGGCCGGGTCCCCCTCTGCATGCTACCAATCT
834 AGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTACGTGCTATCGATCC
** *
20519102 TGCTGCCGTAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
20519167 CCGACGAAATGAGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGATGGGATGTGCAAGCCGTGGA
65 CCGACGAAACGAGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGA
* *
20519232 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAGG
126 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
20519297 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTT----T--A----CAT-----GA--A---G--
191 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
20519340 -------TTTCACGATTTTTGCACCTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGA
256 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA
* * * *
20519398 GTTTTGG-CCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAG
321 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAG
*
20519462 CTAAAAACAT-GAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACT
386 CTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
20519526 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCT-AGTTCTCG
450 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTCA
* * *
20519590 AGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAACATATG
514 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
* * * * *
20519655 CGCACACCCCCCCGGCCCCTCCGATCGCGGGACCCCCAATGCCGTCGGTCAGGTTCT-CTGACGA
579 CGCACACCCCCTCGGCCCCTCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAG-CGA
* * *
20519719 TGCTCTGACAATGGTGCTCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
643 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * *
20519784 GCTGTCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
708 GCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* ** * **
20519849 AATGAACTTCGTATGCCTAAGTCAACCCATAAAACGATCGTGCGGGCGCTCAGTAGGCCAGAGGG
773 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
*
20519914 GCGGGATGCGCAACCCGGGGATCGA-TCGGGTCCCCCTCTACGTGCTATCGATCC
838 GCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTACGTGCTATCGATCC
** * * * *
20519968 TGCTGCTGC-ACTCTCAGTCTGGTCTGATCTTAGACTAGCAATGAACTCCATATGC
1 TGCTGCCACAACCCTCAGTCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGC
20520023 TTAGATTGGG
Statistics
Matches: 2392, Mismatches: 280, Indels: 106
0.86 0.10 0.04
Matches are distributed among these distances:
862 2 0.00
863 149 0.06
864 80 0.03
865 108 0.05
866 255 0.11
876 1 0.00
878 2 0.00
883 3 0.00
887 1 0.00
889 7 0.00
890 153 0.06
891 303 0.13
892 333 0.14
893 136 0.06
894 5 0.00
895 69 0.03
896 6 0.00
897 305 0.13
898 12 0.01
899 60 0.03
900 331 0.14
901 71 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (891 bp):
TGCTGCCACAACCCTCAGTCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
CCCCTCGGCCCCTCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGA
CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
CGCAAGCCGGGGATCGACTGGGTCCCCCTCTACGTGCTATCGATCC
Found at i:20518982 original size:26 final size:26
Alignment explanation
Indices: 20518946--20518998 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20518936 CCGGTCTGAT
20518946 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20518972 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20518998 C
1 C
20518999 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20519841 original size:26 final size:26
Alignment explanation
Indices: 20519812--20519864 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20519802 CCAGTCCGAT
20519812 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20519838 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20519864 C
1 C
20519865 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20522322 original size:898 final size:888
Alignment explanation
Indices: 20519988--20523014 Score: 3989
Period size: 883 Copynumber: 3.4 Consensus size: 888
20519978 CTCTCAGTCT
* * *
20519988 GGTCTGATCTTAGACTAGCAATGAACTCCATATGCTTAGATTGGGAATGAACTCTGTATGCCTAA
1 GGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
20520053 GTCATCCCATGAAACGAGTGTTCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
66 GTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCAGGG
* * *
20520118 ATC-GATCGGGT---CC-CT-C-T--T-T-G--CATGCTGCCGCAACCCTTGGTCTGGCCTGATC
131 ATCAG-TCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGCCTGATC
*
20520170 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAAGCGGGCGGGC
195 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG---GCGGGCGGGC
* * * * * * *
20520235 GGGCAAGCACTATGCTGGCTAGAGAGACGGAATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTG
257 --G--AGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
20520300 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTAAATTGATACAA
318 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
20520365 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAATTT
383 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTT
* * * * * *
20520430 TTTAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACATG
448 TTAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTG
* * *
20520495 GTAGATGTGATCCCTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
512 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
20520560 TAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
577 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
20520625 AACCTATAAAATCTCAAATGTTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGATGAGGGATAGGG
642 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
20520690 GGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGTGCAC-CCCCCCAGCCCCCC
707 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-G-GCCCC
* * * * *
20520754 CGATCGCCGGAACCCCAATGA-CGTCGGTCAGGTT--CTCCGA-CGATGGTGCCTCGGTGAAGAA
770 CGATCGTCGGAA-CCCAAT-ACCGTTGGTCAGGTTCCCTACGATCGATGGTGCCCCGATGAAGAA
* * * * *
20520815 AAATGCGGCACCAGCACATGCCCGAGCCCAGCTTGTGCTGTCGCAACGCTCGCTCC
833 AAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCC
* * * *
20520871 GGTCTGATCTTAGACTGGGGATGAACTTCACATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
1 GGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
** *
20520936 GTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGCATGATGCGCAAGCCATGG
66 GTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCAGGG
* * * * * * * **
20521001 ATCGGCCGGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCGTAACCCTCAGTCCGATCTGATCT
131 ATCAGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGCCTGATCT
*
20521066 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA-----GCGGGCAGGCGAGC
196 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGGCGGGCGGGCGAGC
* * *
20521126 ACTACGCCGGCCAGAGAGATGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
261 ACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
20521191 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCTT
326 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
20521256 TAAGCCTTCACGTGCAGCTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
391 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * * * * * *
20521321 TTTTATGGTTCGAGATTTTTTTAAACTTTTTCAGAAGGGGATTTGGCCCGAAACTTGGTAGCCAT
456 TTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGT
* * **
20521386 GATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGTTAAAAACTCGATTTGTACAAGATTT
520 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
20521451 TATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
585 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
20521516 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTCAATA
650 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
20521581 TAAGGGCCAAGTACCATCACCCATCGCACATCATGTGCGCACACTCCCCCGGCCCCCTATCGTCG
715 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCGATCGTCG
*
20521646 GAACCCTAATACCGTTGGTCAAGTTCCCTGACGATGCTCCGGCAATGGTGCCCCGATGAAGAAAA
779 GAACCC-AATACCGTTGGTCAGGTTCCCT-ACGA---T-C-G--ATGGTGCCCCGATGAAGAAAA
* * *
20521711 ATGCGGCACCAGGACATGCCCGAGCCTAGCACGTGCTGCCGTAACCCTCGGTCC
835 ATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCC
* * * * *
20521765 AGTCTGATGTTAGACTGGGAATGAACTCCATATGCTTAAACTGGGAATGAACTCAGTATGCCTAA
1 GGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** *
20521830 GTCAACCCATGAAACAAGCGTGCGGGCGTTCAATCGGCCAGAGGGGCGGGATGCGCAAGCCAGGG
66 GTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCAGGG
* * * * * *
20521895 ATCAGTCGGGTCCCTCTCTGCGTGCTATTGATCCTGCTACCGCAACCCTCGGTCTGGTCTAATCT
131 ATCAGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGCCTGATCT
* * * *
20521960 TAGACTGCGAATGAACTCTGTATGCCTAAGCCAACTGACGAAATGAGC-GGGCGGGCGGGCGGGC
196 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGGCGGGCGGGCGAGC
* * *
20522024 ACTACGCCGACCAGATAGACGGGATGCGCAAGCCGTGGATCGATGGGGTGGTACGTGGGTTTAGG
261 ACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** * *
20522089 CACATCTTCATATTTCTGTGTGCCAATGTCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCT
326 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * *
20522154 GATGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAAACT
391 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* *
20522219 TTTTTTGGTTCGAGATTTTTGAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAACTTGGTAGACGT
456 TTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT-TGGCCCCAAACTTGGTAGACGT
* * * *
20522284 CATCCTTGTATTTGTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
520 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
20522349 TGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
585 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
20522414 AAATCTCAAATGCTCTTTAA--GCGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
650 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
20522477 TAAGGGCCAAGTACCAGCACCCATCACACATCATGGGCACACACCCCCCGGCCCCCCGATCGTCG
715 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCGATCGTCG
* * *
20522542 GAATCCCAATACCGCCT-GTCAGGTTCTCC-A--AT-GAGGGTGCCCCGATGAAGAAAAATACGG
779 GAA-CCCAATACCG-TTGGTCAGGTTC-CCTACGATCGATGGTGCCCCGATGAAGAAAAATGCGG
* * *
20522602 CACCAGCACATGCCCAAGCCTAGCATGTGCTACCACAACCCTCGGTCC
841 CACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCC
* *
20522650 GGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGTCTGGGAATGAACTCCGTAT-CTCT
1 GGTCT-GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC-CT
* * * * ** * *
20522713 AAGTCAACCCACGAAACGAGTGTACAGGTGCCCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGG
64 AAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCAG
* * ** * *
20522778 GGATCAATCGGGTCCCCCTTTGCGTGCTATCGATCCTGCTGCTACGACACTCGGTCCGGCCTGAT
129 GGATCAGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGCCTGAT
* * * *
20522843 CTTAGACTGGGAATGAA-TGTCGTATGCCTAAGCCAAACGATGAAACGAGCGGGCGGACGGGCGG
194 CTTAGACTGGGAATGAACT-CCGTATGCCTAAGCCAACCGACGAAATGAGC-GG-GG-CGGGCGG
** * *
20522907 GCGAGCACTACATCGACCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
255 GCGAGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
20522972 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
320 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
20523015 GCTAAAAACT
Statistics
Matches: 1872, Mismatches: 228, Indels: 82
0.86 0.10 0.04
Matches are distributed among these distances:
882 4 0.00
883 604 0.32
884 6 0.00
885 273 0.15
886 5 0.00
887 13 0.01
888 3 0.00
889 105 0.06
890 1 0.00
891 2 0.00
892 1 0.00
893 2 0.00
894 275 0.15
895 79 0.04
896 111 0.06
897 8 0.00
898 380 0.20
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
GGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCAGGG
ATCAGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGCCTGATCT
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGGCGGGCGGGCGAGC
ACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
TTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGATCGTCGGA
ACCCAATACCGTTGGTCAGGTTCCCTACGATCGATGGTGCCCCGATGAAGAAAAATGCGGCACCA
GCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCC
Found at i:20522687 original size:26 final size:26
Alignment explanation
Indices: 20522658--20522708 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20522648 CCGGTTCGAT
20522658 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20522684 CTTAGTCTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
20522709 CTCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20524135 original size:26 final size:26
Alignment explanation
Indices: 20524106--20524156 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20524096 GATCCAATCC
20524106 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
20524132 TAGACTGGGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
20524157 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:20526712 original size:26 final size:26
Alignment explanation
Indices: 20526683--20526735 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20526673 CCAGTCCGAT
20526683 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20526709 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20526735 C
1 C
20526736 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20527400 original size:26 final size:26
Alignment explanation
Indices: 20527364--20527416 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20527354 CCTATCCGAT
20527364 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20527390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20527416 C
1 C
20527417 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20528226 original size:26 final size:26
Alignment explanation
Indices: 20528197--20528249 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20528187 TTGATCCGAT
20528197 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20528223 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20528249 C
1 C
20528250 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20529627 original size:26 final size:26
Alignment explanation
Indices: 20529591--20529641 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20529581 AGTCCGATCC
*
20529591 TAGATTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
20529617 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
20529642 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:20532098 original size:26 final size:26
Alignment explanation
Indices: 20532069--20532121 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20532059 CCGATCCGAT
20532069 CTTAGACTGAG-AATGAACTCCGTATG
1 CTTAGACTG-GTAATGAACTCCGTATG
20532095 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
20532121 C
1 C
20532122 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:20534265 original size:870 final size:876
Alignment explanation
Indices: 20532412--20534767 Score: 2675
Period size: 870 Copynumber: 2.7 Consensus size: 876
20532402 TTCTACATGC
*
20532412 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
1 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTAT
** * * * * * * *
20532477 TTTTCAC-ATTTTCAAAACTTTTTGCGCTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
66 TTTTCACGATTTTTGAAACTTATTACGGTTAGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTG
* *
20532541 GCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
131 GCCCCAAA-ATGGTA-AC--GATCCTTGTA-------T--CA-GCACAAAAAAATTCAGCTAAAA
* * *** * *
20532606 ACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
182 ACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAACATACCCATTTCAGACACTTTAACGG
* * * *
20532671 CTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
247 CTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGCGGTGTGAGTTCTCAAGGTTTGA
* * * * * * *
20532736 TAAGGGATAGGTGGCCAATATTAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
312 TGAGGGATAGGGGGCAAATATAAGGCCCAACTACCAGCACCCACCGCACATCATGTGCGCACA-C
* * *
20532801 CCCCACGGCCCCCCCGATCG-TAGGAACCCCAATGTCATCGGTCAGGCTCTCTGGTAATGCTCCG
376 CCCC-CGGCCCCCCCGATCGCCA-GAACCCCAATG-C--C-G-CCGG---TCAGGT--T-CTCCG
* * *
20532865 GCGATGGTGCCCCGATGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
428 ACGATGGTGCCCC-ACGAAGAAAAATG-AGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCC
*
20532929 ATAACCCTCGGTCTGGTCCGATC-T----T----A-G--------A--C-T-G----GGAATGAA
491 ACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTAGGAATGAA
* * * **
20532968 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGAGCGTTCAGCCGGCTAAAGGGGCAGGA
556 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCCCAGCCGGCTAAAGGGGCAGGA
** ** * * * * * *
20533033 TGCGTAAGCCGGGGATCGGCCAAGTCCCCCTCTGCGTAATGTCGATCCTGCTGCCGCAACCCTCG
621 TGCACAAGCCAAGGATCGGCCAAGTCCCCCTCTACGCAATGCCAATCCTACTGCCGCAACCCTCA
20533098 GTCTGGTCTAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAGACGAGCAGA
686 GTCTGGTCTAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGAC-AGACGAGCAGA
* * * * * *
20533163 CGGGCGGACAGGCGGGCCCTACGTTGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
750 CGGGCGGACAGGCGGGCACTACATCGGATAGAGAGACGAGATGCGCAAGCCGTGAATCGATAGGG
* * *
20533228 TGGTAGGTGGGCTTAGGCAGATCTTCATATTTCTACGTGCCAATACAATTTTTATGGCTTGT
815 TGGTAGGTGGGCTTAGGCACATCTTCATATTTCTACATGCCAATACAATTCTTATGGCTTGT
* *
20533290 AAATTCATACAATGGTGCCTTAAGCCTTCCCGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTAT
1 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTAT
** * * * *
20533355 TTTTCTTGATTTTTGAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCAGAAGGA-TTTTC
66 TTTTCACGATTTTTGAAACTTATTACGGTTAGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTT-
*
20533419 GGCCCCAAACATGGT-A-G-T-C-T-TA-CA-CA-AAAAAAATTCAGCTAAAAACTCGAAGTGTA
130 GGCCCCAAA-ATGGTAACGATCCTTGTATCAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCA
* * *
20533475 CAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
194 CAAGATTTTGTGACCATTTGAAAAAAACATACCCATTTCAGACACTTTAACGGCTACTGGCAGCA
* * * *
20533540 AACCTGTAAAATGTAAAATGCTTTTTAAGGCGGTGTGAGTTCTCGAGGTTTTATGAGGGATAGGG
259 AACCTGTAAAATCTAAAATGCTCTTTAAGGCGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* *
20533605 GGCAAATATAAGGCCCAAGTACCAGCACCCACCGCACGTCATGTGCGCACAACCCCTCCTGGCCC
324 GGCAAATATAAGGCCCAACTACCAGCACCCACCGCACATCATGTGCGCAC-ACCCC-CC-GGCCC
*
20533670 CCTCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGGTGCCCCGACGAAGAA
386 CC-CCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCC-ACGAAGAA
* * *
20533735 AAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCGACAACTCTCGGTCTGGTCCGATC
449 AAATGAGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATC
*
20533800 TTAGACTGGGAATGAAC-TCTATATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCAACCC
514 TTAGACTGGGAATGAACTTC-ATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
* * **
20533864 ATGAAACGAGCGTACGGGCGCCCAGCTGGCTAGAA-GGGCGGGATGCACAAGCCAAGGATCGGTT
578 ATGAAACGAGCGTACGGGCGCCCAGCCGGCTA-AAGGGGCAGGATGCACAAGCCAAGGATCGGCC
** ** * * *
20533928 GGGTCCCCCTCTACGCGCTGCCAATCCTACTGTCGCAACCCTCAGTCTGGTCTGATCTTAGACTG
642 AAGTCCCCCTCTACGCAATGCCAATCCTACTGCCGCAACCCTCAGTCTGGTCTAATCTTAGACTA
* * *
20533993 GGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAC-A-C-GATCGGGCAGG-CGGGTGGGCACT
707 GGAATGAACTCCATATGCCTAAGCCAACCGACAGACGAGCAGA-CGGGC-GGACAGGCGGGCACT
*
20534053 ACATCGGATAGAGAGATGAGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGT-GGCTTTAGGCA
770 ACATCGGATAGAGAGACGAGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGC-TTAGGCA
* * *
20534117 CATCTTCATATTTCTGCATGCCAATGCCATTCTTATGGCTTGT
834 CATCTTCATATTTCTACATGCCAATACAATTCTTATGGCTTGT
* *
20534160 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTAT
1 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTAT
* **
20534225 TTTTCACGATTTTTGAAACTTATTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGAGTTTTG
66 TTTTCACGATTTTTGAAACTTATTACGGTTAGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTG
*
20534290 GCCCCAAATTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
131 GCCCCAAAATGGTA-AC--GATCCTTGTA-------T--CA-GCACAAAAAAATTCAGCTAAAAA
* **
20534355 CTCGAAGTGCACAAGATTTTGTTACCATTTGAAAAAAATGTACCCATTTCAGACACTTTAACGGC
183 CTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAACATACCCATTTCAGACACTTTAACGGC
* *
20534420 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
248 TACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGCGGTGTGAGTTCTCAAGGTTTGAT
* * * * *
20534485 GAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCAGCCATCGTACATCATGTGCGCACACCC
313 GAGGGATAGGGGGCAAATATAAGGCCCAACTACCAGCACCCACCGCACATCATGTGCGCACACCC
* * * * * *
20534550 CCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCTGGTCAGGTTCTCCGGCGATGGTGCCCCTC
378 CCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCAC
* * * *
20534615 GAAGAAAAATGAGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCTGGT
443 GAAGAAAAATGAGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGT
* * *
20534680 CCGATCTTATACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTACGTATGCCTAAGTC
508 CCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
*
20534745 AACCCACTG-AACGAGCGTGCGGG
573 AACCCA-TGAAACGAGCGTACGGG
20534768 TAGGATGCAT
Statistics
Matches: 1280, Mismatches: 135, Indels: 118
0.83 0.09 0.08
Matches are distributed among these distances:
847 1 0.00
848 83 0.06
849 2 0.00
851 4 0.00
853 1 0.00
854 3 0.00
855 1 0.00
856 1 0.00
857 200 0.16
858 13 0.01
859 18 0.01
860 3 0.00
866 1 0.00
868 1 0.00
869 10 0.01
870 229 0.18
871 9 0.01
872 4 0.00
873 1 0.00
874 162 0.13
875 3 0.00
876 1 0.00
877 2 0.00
878 73 0.06
879 59 0.05
886 136 0.11
887 51 0.04
888 9 0.01
889 2 0.00
890 7 0.01
891 190 0.15
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (876 bp):
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTATTACGGTTAGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTG
GCCCCAAAATGGTAACGATCCTTGTATCAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCACA
AGATTTTGTGACCATTTGAAAAAAACATACCCATTTCAGACACTTTAACGGCTACTGGCAGCAAA
CCTGTAAAATCTAAAATGCTCTTTAAGGCGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
CAAATATAAGGCCCAACTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
ATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCACGAAGAAAAATGAG
ACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACT
GGGAATGAACTTCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
AGCGTACGGGCGCCCAGCCGGCTAAAGGGGCAGGATGCACAAGCCAAGGATCGGCCAAGTCCCCC
TCTACGCAATGCCAATCCTACTGCCGCAACCCTCAGTCTGGTCTAATCTTAGACTAGGAATGAAC
TCCATATGCCTAAGCCAACCGACAGACGAGCAGACGGGCGGACAGGCGGGCACTACATCGGATAG
AGAGACGAGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATT
TCTACATGCCAATACAATTCTTATGGCTTGT
Found at i:20534723 original size:26 final size:26
Alignment explanation
Indices: 20534685--20534737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20534675 CTGGTCCGAT
* * *
20534685 CTTATACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
20534711 CTTAGACTAGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
20534737 C
1 C
20534738 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:20536597 original size:858 final size:855
Alignment explanation
Indices: 20534799--20539566 Score: 5761
Period size: 858 Copynumber: 5.5 Consensus size: 855
20534789 CAGCTTATGC
20534799 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
1 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
20534864 TTCATGATTTTTAAAACGTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGT
66 TTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
20534929 CCCAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
131 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
20534994 TCGAAGTGTACAAGATTTTCTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCT
196 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCT
* ** *
20535059 ACTGGCAGCAAACCTGTAAAATCGCAAATGCTCAATAAGGGGGTGTGAGTTATCGAGGTTTGATG
260 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* **
20535124 AGGGATAGGGGGCCAATATAAGGGCTAAGTATTAGCACCCATCGCACATCATGTGCGCAGC-CCC
325 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACCC
* * * * *
20535188 CCGACCCCCCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGAC
389 CCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGGC
* * * * *
20535253 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGTCGTAACCC-CTGGTCCGG
453 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGGTCCGA
* * * *
20535317 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-TGTGGGCA
518 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCG
* * * *
20535381 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGAATCGATAGGGTCCCCTTCT-CTGTGCT
583 CTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGG-ATCG-TCGGGTCCCCCTCTGC-GTGCT
** * * * * * * * * * *
20535444 ATTGATTCTGCTGTCGCAACCCTTGGTCC-AGTCTGATCTAAAATTTGGAATGAACTCCGTATGC
645 ACCGATCCTGCTGCCGCAACCCTCGTTCCGA-TCCGATCTTAGACTGGGAATGAACTCTGTATGC
* * * *
20535508 CTAACCCAACCTACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCA
709 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
20535573 AGCCATGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTACAT-T-TGCCAATG
774 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-C-TGTATGCCAATG
20535636 CCATTTTTATGGCTTGTAA
837 CCATTTTTATGGCTTGTAA
*
20535655 ATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
1 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
20535720 TTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGGC
66 TTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
20535785 ACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
131 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
20535850 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCACATTTCAGACACTTTAATGGCT
196 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC-CATTTCAGACACTTTAATGGCT
20535915 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
260 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
20535980 AGGAATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCC
325 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* ** * * * * * *
20536045 CCGGCCCCACCGTTCATCGAAACCCTAATGCCGTCGGTCGGGTTCTCCGACGGTGGTGCCCCGAC
389 CCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGGC
*
20536110 GAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GGTCCGA
453 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGGTCCGA
** * * *
20536174 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCCTCCCACGAAAGGAACGCGGGGGCG
518 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCG
* *
20536239 CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTGTC-TGCTA
583 CTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATC-GTCGGGTCCCCCTCTG-CGTGCTA
* * * * * *
20536303 CCAATCTTGGTGCCGCAACCCTCGTTCCGATCCAATCTTAGACTGGGAATGAACTCTATATACCT
646 CCGATCCTGCTGCCGCAACCCTCGTTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCT
* * *
20536368 AAGCCAACTGACGAAACAAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
711 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
20536433 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAA
776 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCAT
20536498 TTTTATGGCTTGTAA
841 TTTTATGGCTTGTAA
*
20536513 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTT
1 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * * * *
20536578 TTCACGATTTTCAAAACTTTTTGTGGTTCAGGATTTTTTTAAATCTTTTCGAAAGGAGTTTTGGC
66 TTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
**
20536643 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCGTAAAAAAATTCAGCTAAAAAC
131 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
20536708 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCT
196 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-ATTTCAGACACTTTAATGGCT
* * * *
20536773 ACTAGCAGCAAACCTATAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
260 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
** *
20536838 A-TTATAGGGGGCCAATATAAGGGCCCAA-TACCAGCACCCATCGCACATCATGTGGGCACA---
325 AGGGATAGGGGGCCAATATAAGGG-CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
*
20536898 -C--CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCGCGGCG
389 CCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGGCG
* * * * * *
20536960 AAGAAAAATACGGCACCAGCACATGCCTGATCCTACCATATGCTGCCGCAAACCTCTGTCTGGTC
454 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC-AACC-C--TCTGGTC
20537025 TGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
515 ----C---------G-AT---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
20537090 ACCCACGAAATGAGCGTC-CGGGCGCTCAATCGGCCAGAGGGGAGGGATGCGTAAGCCAAGGATC
559 ACCCACGAAACGAGCG-CGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATC
* * * * * *
20537154 GGTCGGGTCCCCTTCTGCGTGCTACTGATCCTGCTGCCACAACCCGCGATCCGATCTGATCTTAG
623 -GTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGTTCCGATCCGATCTTAG
* * *
20537219 ACTGGGAATGAA-TTTCGTATGCATAAGCCAACCGACGAAATGAGTGAGCGGGCAGGTGGGCGGG
687 ACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGC----GGGCGGG
* * *
20537283 TACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
743 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
20537348 GCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAA
808 GCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAA
*
20537396 ATTCATACAA------CTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
1 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** * *
20537455 TTCATGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGC
66 TTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
20537520 CCCAAACCTGGTAGACATGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
131 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
20537585 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCACATTTCAGACACTTTAATGGCT
196 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC-CATTTCAGACACTTTAATGGCT
**
20537650 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAAAGGTTTGATG
260 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
20537715 AGGAATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACCCCCC
325 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACCC
* * * * * *
20537780 CACAGCCCCCTGATCGCCGGGACCCTAATCCCGCCGGTCAGGTTCTCTGGTGATGCTCCGGTGAT
389 C-CGGCCCCCCGATCGCCGGAACCCCAAT---GCC-GTC-GG---TCAGGT--T-CTCCGGCGAT
* * *
20537845 GGTTCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACC
442 GGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
20537910 CTC-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
507 CTCTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * *
20537974 GCGTGCGGGCGTTC-A---G-C------------T--G---GCC--GGA--G-C--GTCCTCCTC
572 GCGCGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGTCGGGTCCCCCTC
* * * * *
20538010 TGCGTGCTGCCGATCCTACTACCACAACCCTCGGTT-CAATCCGATCTTAGACTGGGAATGAACT
637 TGCGTGCTACCGATCCTGCTGCCGCAACCCTC-GTTCCGATCCGATCTTAGACTGGGAATGAACT
* * *
20538074 -TCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGAGCACTACGCTGGCCAGAGAGACG
701 CT-GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * * *
20538138 GGATGTGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTGGGCACATCTTTATATTTCTGTGT
765 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTAT
*
20538203 GTCAATGCCATTTTTATGGCTTGTAA
830 GCCAATGCCATTTTTATGGCTTGTAA
* * * *
20538229 GTTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACTACTCATTTTCTATTT
1 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
20538294 TTCACGATTTTTAAAATTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTAGC
66 TTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
20538358 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATGCAGCTAAAAAC
131 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
20538423 TCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACCCTTTAATGGCT
196 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCT
*
20538488 ACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
260 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * ** * *
20538553 AGGGATAGGGGGCCAATATAAGGGCTAAGTTCCAGCACCCATCATACATCTTGTGTGCACACCCC
325 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * *
20538618 TCGGCCCCCCAATCGCCGAAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCTGGCGATG
390 -CGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG-T-T----C--T-C-C-GGCGATG
* * * *
20538683 GTGCCCCGGTGAAGGAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAAACC
443 GTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC-AACC
*
20538748 TCGGTCTGGTCCGATCTTGGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTA
507 -C--TCT-G---G----T---C---C---G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTA
* * * * * * * **
20538813 TGGCTAAGTCAACCCACGAACCGAGCGTGCGGGCGTTCAATCGGCTAGAGTGGTGGGATGCATAA
548 TGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAA
* * * * * ** * * *
20538878 GTCGATGATCGGCGGGGTCCCTCTCTACGTGCTGTCGATACC-ACTACAGCAACCCTCAGTT-CG
613 GCCGAGGATCGTC-GGGTCCCCCTCTGCGTGCTACCGAT-CCTGCTGCCGCAACCCTC-GTTCCG
* **
20538941 GTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGT
675 ATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----
* * *
20539006 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGTGTGCTAGGTG
736 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * ***
20539071 GGCTTAGGCACATCTTCATATGTCCACATGCCAATGCCATTTTTATGGCTTGTAA
801 GGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAA
* * * *
20539126 ATTCATACAATGGTCCCTGAAGCCTTCACGTGAGGTTTCATGGCAAGACGACCCATTTTCTATTT
1 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
20539191 TTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGCGTTTTAGC
66 TTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* **
20539256 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAATGC
131 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
20539321 TCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTTTCCCTATTTTAGACACTTTAATGGCT
196 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-ATTTCAGACACTTTAATGGCT
*
20539386 ACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
260 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
20539451 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGGACACCCC
325 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-G-CA-CAC
* * * *
20539516 CCCCGTTCGCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
387 CCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
20539567 TATATCTAAG
Statistics
Matches: 3404, Mismatches: 347, Indels: 288
0.84 0.09 0.07
Matches are distributed among these distances:
829 5 0.00
830 1 0.00
832 3 0.00
833 118 0.03
834 4 0.00
835 1 0.00
836 1 0.00
837 92 0.03
838 243 0.07
839 99 0.03
840 2 0.00
841 82 0.02
842 3 0.00
843 2 0.00
844 1 0.00
846 1 0.00
847 3 0.00
849 92 0.03
850 9 0.00
851 1 0.00
852 2 0.00
853 3 0.00
854 5 0.00
855 3 0.00
856 366 0.11
857 213 0.06
858 548 0.16
859 5 0.00
860 1 0.00
861 4 0.00
862 2 0.00
863 59 0.02
864 1 0.00
866 1 0.00
867 3 0.00
868 2 0.00
870 1 0.00
871 59 0.02
872 3 0.00
873 2 0.00
874 6 0.00
875 168 0.05
876 3 0.00
877 292 0.09
878 51 0.01
879 9 0.00
880 1 0.00
883 121 0.04
884 1 0.00
885 2 0.00
886 21 0.01
887 2 0.00
888 1 0.00
889 4 0.00
890 5 0.00
891 3 0.00
892 5 0.00
893 95 0.03
894 7 0.00
895 2 0.00
896 5 0.00
897 278 0.08
898 233 0.07
899 2 0.00
900 5 0.00
901 36 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (855 bp):
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
GGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGGCGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGGTCCGATCC
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCGCTC
AACCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGTCGGGTCCCCCTCTGCGTGCTACCGAT
CCTGCTGCCGCAACCCTCGTTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTA
TGGCTTGTAA
Found at i:20537058 original size:26 final size:26
Alignment explanation
Indices: 20537029--20537081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20537019 CTGGTCTGAT
* *
20537029 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20537055 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20537081 C
1 C
20537082 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20540109 original size:598 final size:597
Alignment explanation
Indices: 20538975--20540115 Score: 1811
Period size: 598 Copynumber: 1.9 Consensus size: 597
20538965 CTCCATATGC
* *
20538975 CTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
1 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATG
* * *
20539040 CGTAAGCCGTGGATCGATAGTGTGCTAGGTGGGCTTAGGCACATCTTCATATGTCCACATGCCAA
66 CGCAAGCCATGGATCGATAGTGTGCTAGCTGGGCTTAGGCACATCTTCATATGTCCACATGCCAA
*
20539105 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAGGTTTCATGGC
131 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGC
* * * *
20539170 AAGACGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAAT
196 AAGACGACCCATTTTCTATTTTACATGATTTTTGAAACGTTTTGCGGTTCGAGATTTTTTAAAAT
* * *
20539235 TTTTTTGGAAGGCGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGTA
261 TTTTTTGAAAGGCGTTTTAGCCCCAAACTTGGTAGACATGATCCTCGTATTTTTGTTGGCATGAA
* ** * * *
20539300 CAAAAAAATTCAGCTAAATGCTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTTTCCCT
326 CAAAAAAATTCACCTAAAAACTCAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCC
* *
20539365 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGT
391 ATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGT
*
20539430 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCG
456 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
20539495 CACATCATGTGCGGACACCCCCCCCGTTCGCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGG
521 CACATCATGTGCGGACACCCCCCCCGTTCGCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGG
20539560 TTCTCCGTATAT
586 TTCTCCGTATAT
* * *
20539572 CTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGCTGGCCAGAGAGACAGGATG
1 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATG
* * * * ***
20539637 CGCAAGTCATGGATCGATACG-GTGGTAGCTGGGTTTAGGCACATCTTCATATTTTTTGCATGCC
66 CGCAAGCCATGGATCGATA-GTGTGCTAGCTGGGCTTAGGCACATCTTCATA-TGTCCACATGCC
* *
20539701 AATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
129 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATG
*
20539766 GCAAGACGA-CTAGTTTTCTATTTTACATGATTTTTGAAACGTTTTGCGGTTCGAGATTTTTTAA
194 GCAAGACGACCCA-TTTTCTATTTTACATGATTTTTGAAACGTTTTGCGGTTCGAGATTTTTTAA
* * * * * *
20539830 AATTTTTTTGAAAGGGGTTTTGGCCCCTAACTTTGTAGACGTGATCCTCGTATTTTTGTTGGGAT
258 AATTTTTTTGAAAGGCGTTTTAGCCCCAAACTTGGTAGACATGATCCTCGTATTTTTGTTGGCAT
* *
20539895 GAACAAAAACATTCACCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
323 GAACAAAAAAATTCACCTAAAAACTCAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTC
* * *
20539960 CCCATTTCATACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTATATG
388 CCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTA-AGG
20540024 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
452 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
20540089 ATCGCACATCATGTGCGGACACCCCCC
517 ATCGCACATCATGTGCGGACACCCCCC
20540116 GGCCCCCAAT
Statistics
Matches: 494, Mismatches: 46, Indels: 7
0.90 0.08 0.01
Matches are distributed among these distances:
597 108 0.22
598 386 0.78
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (597 bp):
CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATG
CGCAAGCCATGGATCGATAGTGTGCTAGCTGGGCTTAGGCACATCTTCATATGTCCACATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACCCATTTTCTATTTTACATGATTTTTGAAACGTTTTGCGGTTCGAGATTTTTTAAAAT
TTTTTTGAAAGGCGTTTTAGCCCCAAACTTGGTAGACATGATCCTCGTATTTTTGTTGGCATGAA
CAAAAAAATTCACCTAAAAACTCAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGGACACCCCCCCCGTTCGCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGG
TTCTCCGTATAT
Found at i:20540287 original size:26 final size:26
Alignment explanation
Indices: 20540258--20540310 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20540248 CCAGTCCGAT
20540258 CTTAGACAGGGAACGAACTCCATATG
1 CTTAGACAGGGAACGAACTCCATATG
* * *
20540284 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAACGAACTCCATATG
20540310 C
1 C
20540311 CTAAATCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAACGAACTCCATATG
Found at i:20542767 original size:26 final size:26
Alignment explanation
Indices: 20542738--20542790 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20542728 CTGGTCTGAT
*
20542738 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20542764 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20542790 C
1 C
20542791 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20545466 original size:26 final size:26
Alignment explanation
Indices: 20545430--20545480 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20545420 GATCTGATCA
20545430 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
20545456 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
20545481 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:20546030 original size:901 final size:900
Alignment explanation
Indices: 20542007--20554599 Score: 15805
Period size: 887 Copynumber: 14.1 Consensus size: 900
20541997 GTGCTGTCGT
* * ** * * *
20542007 AACCCTCGATCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACCGTCGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
20542072 TGAGCAGACGGGCAGGCGGGCGGGCGGGCACTACCTCGGCCAGAGAGAC-GGATACGTAAGCCGT
66 CGAGC-GA---GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * **
20542136 GGATCAATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCCGTGTGCCAATGCCATTTTT
127 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
20542201 ATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
192 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
20542266 GTTTTCTATTTTTCACGATTTTTGAAACTTTATGCGGTTCAGG-TTTTTTAAAAGTTTTTCGGAA
257 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * * *
20542330 GGAATTTTGTCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCTCAAAAAAATT
322 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
20542395 CAGCTAAAAACTCGATGTGTACAAGATTTCAG-GACCATTTCAAAAATGTGTCCCCATTTCAGAC
387 CAGCTAAAAACTCGAAGTGTACAAGATTT-TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
20542459 ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCGAATGCTCTTCAAGGGGGTGTGAGTTCT
451 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
20542524 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCGAGTGCCAGCACCCATCACAAATCATG
516 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
20542589 TGCGCACACCCCCCCTGGCCACCCCGATTGCCGGAACCCCAACGTCGTCGGTCAGGTTCTTCGAC
581 TGCGCACA-CCCCCC-GGCC-CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
20542654 GA-----C--A--GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
643 GATGCTCCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
** *
20542710 GCTGCCAAAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGG
708 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
** * * *
20542775 AATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGG
773 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGG
** * * * * * *
20542840 GTAGGATGCGCAAGCCG-GAGATCGGCCGGGTCCCCCTCTGTGTGCTACTGATCTTGCTGCTGC
838 GCGGGATGCGCAAGCCGAG-GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * * * * *
20542903 GACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACTGACGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
20542968 CGAGCGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAAGCCGTGGAT
66 CGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* ** **
20543033 CGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATAT
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * *
20543098 CTTCTAAATTTATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
20543163 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAGTTTTTCGGGCAGGA
261 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GGAAGGA
** *
20543228 -TTTTGGCCCTTAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
20543292 CTAAAAACT-GAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
20543356 TAATTGCTACTCGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
20543421 GTTTGATGAGGGATAGGGGGCCAATAT-AGGGACCAAGTACCAGAACCCATCGCACCT-ATGTGC
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGG-CCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * *
20543484 GGATAGCCCCCCGGCCCCCCCGATCGCCGGAACCCTAATACCGTCGGTCAGGTTCTTCGGCGATG
584 GCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * *
20543549 CTCAGG-TGACGGGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCACGTG
647 CTCCGGATG--GTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
20543612 CTGCCGTAACCCTCGGT-TGGGTCCGATCTTGGACTGGGAATGAACTCCGTATGCTTAAACTGGG
709 CTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* *
20543676 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGTCGGCCAG-GGG
773 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGG
* *
20543740 GCGGGATGCGCAAGCC-AGGGATCGGCC-GGT-CCCC-C--C---CTG-C-A---TGCTGCCAC
838 GCGGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
** ** *
20543790 AACCCTAAGTCTGGTCCGATCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * *
20543855 CGAGGGGGCGGGCGGGCGGGCGAGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGAAT
66 CGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
20543920 CGACAGGGTGGTAGCTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
20543985 CTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
*
20544050 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTTC-GAAAG
261 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAA-TTTTTTCGGAAGG
* *
20544114 ATTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTACGTTTTT-TTGGCATGCACAAAAAAATT
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATT
*
20544178 CAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACA
387 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
20544242 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
452 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
20544307 AAGGAATT-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATG
517 GAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** * * *
20544371 TGCATACACCCCCCGGGCCCCCGGTCGCCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGACGAT
581 TGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * * * * *
20544436 GCTTCGACGTTGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTG
646 GCTCCG--GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* ** * *
20544501 CTACCGCAACCCTCGGTCTGGTCCAATCTCAGACTGGGAATGAACTCCGTATGCTTAGACTGGAA
709 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
** ** * *
20544566 ATGAACTATGTATGTGTAAGTCAACCCACGAAACGAGCGTGC-AGCTGCTCTGTCGGCCAGAGGG
774 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGTCGGCCAGAGGG
* * * * * * *
20544630 GCGGGATGCACAAGCC-AGGGTCGGCCAGGTTCCCCTCTACGTGCTGCTGATCCTGCTACAGC
838 GCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
*
20544692 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
20544757 CAAGCG-GACGGGCGGGCGGAG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGG
66 CGAGCGAG-CGGGCGGGCGG-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
20544820 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
20544885 GGCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
20544950 TTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGA-TTTTTAAAATTTTTTCGGAAGG
259 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
20545014 AGTTTTGGCCTCAAACTTGGTAGACTTGATCCTTGTATATTTT-TTGGCATGCACAAAAAAATTC
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTC
* * * *
20545078 AACTAAAAACTTGAAGTGTACAAGATTTTGAGACCTTTTGAAAAAAGTGTCCCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
20545143 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTACTCG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * *
20545208 AGGTTTGATGAGGGATAAGGGGCTAATATAAGGGCCAAGTACCTGCACTCATCGCACATTATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
20545273 CGCACACCCCCCGACCCCCTGATCACCGGAACGCCAATGCCGCCGATCAGGTTCTCCGACGATGC
583 CGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * * * *
20545338 TCCGGTGATGGTGCCTCGACGAAGAAAAATGCAGCCCCAACACATGCCCGACCCCAGCATGTGCT
648 TCC-G-GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
20545403 GCCGCAACCCTCGATCTGATCTGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
711 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
20545468 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCGGGCGCTCAATCGACCAGAGGGGCA
776 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCG
* * * * ** * *
20545533 GGATGCGCAAGCTGAGGATCGGTCAGATCCCCCTCTGCGTGCTGTTGATCCTACTACCAC
841 GGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * ** *
20545593 AATCGTCGGT-TCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
1 AACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
20545657 ACGAGCGAGCGGGCGCGCGGGCGGGCACCACGTCGACCAGAGAGACGGGAAGCACAAGCCGTGGA
65 ACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
20545722 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * *
20545787 GCTAGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGATGACTCATT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
20545852 TTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATCTTTTAAAATTTTTTTGGAAGGA
260 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* *
20545917 GTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-CCAAAAAATTCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
20545981 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCTCATTTCAGACACAT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
20546046 TAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAG
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* ** * * *
20546111 GTTTGATGAGGGATAAGGGGCCAATATAACTGCCAAGAAGC-GATACCCATCGCACATCATGTGC
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTGC
* * * * **
20546175 GCACACCCCCCGGCCCCCCCGATCGTCGGAA-CCCAAAGCTGCCAGTCAGGTTCTCCGGTGATGC
584 GCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* ** * *
20546239 TCTGGTAATGGTGCCCCGACGAAGAAAAACACGGCACCAGCACATGCCCAAGCCCAACATGTGCT
648 TCCGG--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * ** *
20546304 ACCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
711 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * ** * * * * ** * **
20546369 GAACTCCATATG-CTTAG---A--CTGGGAATGAAC-TCCATATGC-CTAAGTCAACCCATGA--
776 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC--GGGCGCTCAGTC-GGCCA-GAGG
** * * ** * *
20546424 AAC--GA-GCGTACATCTCGAGGATCGATCGCGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
837 GGCGGGATGCGCA-AGC-CGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCG
20546486 C
900 C
* * ** * * *
20546487 AACCATCAGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
20546552 TGAGCGGGCGGGCGGACGGGCGGGCGGGCACTACGTCGGTCAGAGAGACAGGATGCGTAAGCCGT
66 CGAGCGAGC--G-GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
20546617 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTT
127 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
20546682 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
192 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
20546747 GTTTTCTATTTTTCAGGATTTTTAAAACCTTTTT-TGGTTCGGGATTTTTTAAAATTTTTTCGAA
257 GTTTTCTATTTTTCATGATTTTTGAAA-CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * * *
20546811 AAGAGTTTTGGCCACAAACTTGGTAGACATGATCCTTGCATTTTTTTTGGCATGCGCAAAAAAAT
321 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* ** *
20546876 TAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATTATATTTGAAAAAAGTGTCCCCA-TCCAG
386 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA--CCATTTGAAAAAAGTGTCCCCATTTCAG
*
20546940 ACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
449 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
20547005 CTCGAGGGTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCT
514 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** *
20547070 TGTGCGCACACCCCCCTCCGGCCCCTTTGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCC
579 TGTGCGCACA--CCCC-CCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * **
20547135 GGTGATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCACATGCTTGAGCCCAG
640 GACGATGCTCCG--GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
20547200 CATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGTCTGGGAATGAACTCCATATGCTTAGA
703 CATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
20547265 CTGGGAATGAACT-C-AATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCA
768 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
* * * * ** * * * *
20547328 GAGGGGCGGGATGCGAAAGTCGGGGATCAGCCAAGTCCCCTTCTGCGTGCTACCGATCCTACTTC
833 GAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
*
20547393 TAG-
898 -CGC
* *
20547396 AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * * * *
20547460 --A-C-A---AGC-GG-GTGC--ACACTACGCCGGCCAGAGAGAAGGGATGTGCAGGCCTTGGAT
66 CGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *** *
20547514 CGATAGGGTGGTAGGTTGTTTTAGGCACATCTTCGTATTTCTATGTGCCAATACCATTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
20547579 CTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCGTGGCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * ** * *
20547644 TCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTTTGAAAGTG
261 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
20547709 TTTTGGCCCTAAACTTGGTAGATGTGATCCTTGTACTTTTT-CTGGCATGCACAAAAAAATTCAG
326 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAG
* *
20547773 CTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCA--TCAAGACACT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACT
* *
20547836 TTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
20547901 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
20547966 GCACATCCCTCCGGCCCCCCGATCGTCGGAACTCCAATGCCGCCGGTCAGGTTCT-C--CG--G-
584 GCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * * *
20548025 --C-GATGGTGCCCCAACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGAATGTGCTGC
648 TCCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
** * * *
20548087 CGCAACCCTCCATCTGGTCTGATCATAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGA
713 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
20548152 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGG
778 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGG
* * ** * * * *
20548217 ATGTGCAAGCCGGGGATCAACCGGGT-CCCTTCTGTGTGTTGTCGATCCTGCTACCGC
843 ATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * *
20548274 AACACTCGGTCTGGTCCGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCGAC--AA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
20548337 --AGTGAGCGGGCGGGCGGGCGGGCACTACG-CTGGCCAGAGAGACGAGATGCGCAAGCCGTGGA
66 CGAGCGAGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
20548399 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTACCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
20548464 GCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
20548529 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTAGGGATTTTTTAAAATTTTTTCGGAGGGA
260 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* *
20548594 GTTTTGGCCCCTAAA-TTGGTCGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
325 GTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
20548658 GCTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCAGGCACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
20548722 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
20548787 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AGTACCAGCACCCATCACACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
20548851 GCACACCCCCCGG-CCCCCGATCACCGGAACCTCAATGCCGCCGGTCAGGTTCT-C--CGA----
584 GCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * *
20548908 -C-GATGGTGCCCCGAAGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGAATGTGCTGCC
649 CCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * *
20548971 GCAACCCTCCGTCCGGTCTGATCATAGACTGGGAATGAACTCCATATGCGTAGACTGGGAATGAA
714 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
20549036 CTCTGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGCTCAGTCGGCTAGAGGGGCGGGA
779 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGA
* * * * * * **
20549101 TGCACAAGCCGAGGATCGGTCGGG-CCCCCTCTGCGTCCTGTCGATCTTGCTGCCAT
844 TGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* ** * *
20549157 AACCCTCAGTCCAGTCCAATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * *
20549222 CGAGC-AGGCGGGCAGACTGGCGGGCACTACATTGACCAGAGAGACGGGATGCGCAAGCCGTGGA
66 CGAGCGA-GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
20549286 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTACCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
20549351 GCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** *
20549416 TTCTATTTTTCATGATTTTTGAAACTTTTTGA-GGTTCATGATTTTTTAAAATTTTTTCGAAAGG
260 TTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
20549480 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCACAAAAAAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
20549545 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * *
20549610 TTAATTGCTACTAGCAGAAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTG-GTTCTTG
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTCG
*
20549674 AGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
20549739 CGCACACCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
583 CGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * * * * * * *
20549804 TCCGACGATGGTGCACCGGCAAAGAAAAATACGGACATCAGCATATGCCTGAGCCCAGCATGTGT
648 TCCG--GATGGTGCCCCGACGAAGAAAAATGCGG-CACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
20549869 TGCTGCAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAA
710 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
20549934 TGAACTCCGTATGCCTAAGTCAACCCATC-AAACGAGCTTGCAGGCACTCAGCCGGCCAAAGGGG
775 TGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
* * * * * * *
20549998 CGGGACGCGCAAGCC-AGGGTTAGGCCGGGTCCCCCTCTGTGGGCTGCTGATCCTGCTACCGT
839 CGGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * * * * *
20550060 AACCCTTGATCTGATTCGATCTTAGACTGGGAATGAACTCCATATGCCTATGCCAACCGACGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * *
20550125 CGAACGGGCAGGCGGGCGGGCGGGCACTACATCGTCCAGAGAGACGGGATGCGTAAGCCGTGGAT
66 CGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
20550190 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
20550255 CTTGTGAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * ** *
20550320 TTTATTTTTCATGATTTTTGAAACTTGTTGCGATTCAAGATTTTTTAAAATTTTTTCAGAAGGAG
261 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
20550385 TTTTGGCCCCAAACTTGGTATACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
326 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
20550450 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTT
391 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20550515 AATGGTTACTGGCAGCAAACCTGGAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGG
456 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
20550579 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCTCATCATGTGCGC
521 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
20550644 ACACCCCCCTGGCCCCCCCGATCACTGGAACCCCAATGCCGCCAGTCAGGTTCTTCGACGATG--
586 ACACCCCCC-GG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * *
20550707 -C------T---CCGACGAAGAAAAATGCCGCACCCGCACATGCCCGAACCCAGCATGTGCTGCC
649 CCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * *
20550762 ACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAA
714 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
20550827 CTCCGTATCCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGA
779 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGA
* * * ** * * * *
20550892 CGCACAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAATCTTGCTGCCGC
844 TGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
** *
20550949 AACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
20551014 CGA---A---------CGGACGGGCACTACG-CTGGCCAGAGAGACGGGATGCGCGAGCTGTAGA
66 CGAGCGAGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGA
** ** * * **
20551066 TTAATAAAGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCATGCCAAAGAGATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
20551131 GCTTGTAAATTCATACAATGGT-CCTTGAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT
195 GCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
20551195 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCTGGATTTTTTAAAATTTTTTCGAAAGG
259 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * *
20551260 GGTTTTGGTCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
20551325 GCTAAAAAATCAAACTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
20551390 TTAATGGCTACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
20551455 GGTTTGAAGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCGAACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* ** * ** * *
20551520 GCACATCCCCCCCGGCCCGCCCAATCGCCGGAACCGTAATGTCTTCGGTCAAGTTCTCCGATGAT
584 GCACA--CCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * *
20551585 G---C-----GT----CGACGAAGAAAAATGCGGCACCAACAGATGCCCGAGCCTAGCATGTGCT
646 GCTCCGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * ** ** * * * * *
20551638 ACTGCAACCCTTTGTCCAGTCCGATCCTAGACTGGGAATGAACTCTGTATGCATAGACTGGGATT
711 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * ***
20551703 GAACTCCGTATCCCTAAGTTAACCCATGAAACCAGCATGCACACGCTCAG-CTGGCCAGAGGGGC
776 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GGCCAGAGGGGC
* * *
20551767 GGGATGCGAAAGCCGAGGATCGGCTGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCGC
840 GGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * * *
20551828 AATCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
*
20551893 CGAGC-A---GGCGGGCGGGTGGGCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 CGAGCGAGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* ** * *
20551953 TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCACCTTTCTGCATTCGAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
20552018 GGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
20552083 TTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGACTTTTTAAAACTTTTTCGAAAGGG
260 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
*
20552148 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAATAATTCA
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCA
* *
20552212 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAATGTCCCCATTTCAGACAC
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACAC
* *
20552277 TTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTATGAGTTCTCG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
20552341 CGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * **
20552406 TGCACACCCCTCGGCCCCCCCGATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATG
583 CGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * *** * * *
20552471 CTCCGATGATGGTGGCTCGACGAAGAAAAATATAGCACCAGCCCATGCCCGAGCCCAGCATCTAC
647 CTCCG--GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* ** **
20552536 TGTCGCAACCCTCATTCTGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAA
710 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
20552601 TGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGC
775 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGC
* *** * ** *
20552666 GGGATGCGCAAGCCGGGGATCGATTGGGTCCCCTTCTGCGTGCTGTTGATCCTTCTACCGC
840 GGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* ** *
20552727 AACCCTCAGTCTTATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCGACG-AA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
20552791 --A-CGA----GTGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCGGTGGAT
66 CGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
20552849 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTTCCTACCAATGCCATTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * * *
20552914 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTACATTGCGAGACGACTCATTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
20552979 TCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTCAAAATTTTTTTGGAAGGCG
261 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * **
20553044 TTTTGGCCCCAAACTTTGTAGACGTGTTCCTTGTATTTTT-TTGGCATGCACAAAAACTTTCAGC
326 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
20553108 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTT
391 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20553173 ATTGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
456 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
** * *
20553238 TTTGATGAGGGATAGGGGGCCAATATAAGGTTCAAGAACCAGCACCCATTGCACATCATGTGCGC
521 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
*** * *
20553303 ACACCCCCCGGCCCCTCCGATATTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTC
586 ACACCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * *
20553368 CGACGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATATGCTGC
650 CG--GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
20553433 CGCAACCCTCTGTCTGATCTGATTTTAAACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
713 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
** * * * *
20553498 ACTCTATATGCCTCAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGACCAGA---G-GGG
778 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGG
* * * * * *
20553559 ATGCGCAAGCCGGGGATCGGCTGGGTCCTCCTCTGCGTGTTGCCGATCCTGTTGCCGC
843 ATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * *
20553617 AACCGTCGGT-TCGGTCCGATCTTACACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG-A
1 AACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
20553680 A--A-CGAGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGA
65 ACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* **
20553742 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
20553807 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
20553872 TTCTATTTTTCACGATTTTTGAAACATTTTGCGGTTCGAGATTTTTCAAAAATTTTTTCGGAAGG
260 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTT-TAAAATTTTTTCGGAAGG
* * * * **
20553937 ATTTTTGGCCCCAAACTTTGTAAACGTGTTCCTTGTATTTTTGTTGGCATGCACAAAAACTTTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
20554002 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
20554067 TTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
20554131 GGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAACATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * *
20554196 ACACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGTCGTCAGTCAAGTTCT-C--CGA---
584 GCACACCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * *
20554255 --C-GATGGTGCCCCGATGAAGAGAAAT-CTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG
648 TCCGGATGGTGCCCCGACGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
**
20554316 TTGCAA-CC-C--TC--G---G-TC-----C---G-AT---CT--G-AT-CTTAGACTGGGAATG
712 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
** * * **
20554355 AACTCCGTATGCCTAAGTCTGCCCACGAAACGAGAGTGCGGGCGCTCAGCCGGCCAGAGGGAAGG
777 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGG
* * * ** * *
20554420 GATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCTGC
842 GATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * * * * *
20554479 AACCCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
20554544 CGAGCGGGCGGGCGGGCGGGTGGGCCGGCACTTCG-CAGGCCAGAGAGACGGGATGC
66 CGAGCGAGCGGGCGGGC----GGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGC
20554600 ACCCATTGCA
Statistics
Matches: 10275, Mismatches: 1199, Indels: 472
0.86 0.10 0.04
Matches are distributed among these distances:
858 65 0.01
859 2 0.00
860 1 0.00
862 110 0.01
863 2 0.00
865 3 0.00
866 13 0.00
869 2 0.00
870 29 0.00
874 1 0.00
875 1 0.00
876 5 0.00
877 490 0.05
878 165 0.02
879 377 0.04
880 10 0.00
881 1 0.00
882 3 0.00
883 321 0.03
884 66 0.01
885 88 0.01
886 424 0.04
887 1021 0.10
888 288 0.03
889 632 0.06
890 239 0.02
891 204 0.02
892 71 0.01
893 690 0.07
894 745 0.07
895 459 0.04
896 206 0.02
897 10 0.00
898 275 0.03
899 373 0.04
900 573 0.06
901 872 0.08
902 617 0.06
903 500 0.05
904 194 0.02
905 1 0.00
906 5 0.00
907 5 0.00
908 17 0.00
909 91 0.01
910 4 0.00
911 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
GGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATG
CGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
Found at i:20546358 original size:26 final size:26
Alignment explanation
Indices: 20546329--20546407 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
20546319 CCGGTCCAAT
20546329 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20546355 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20546381 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20546407 C
1 C
20546408 CTAAGTCAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20548148 original size:26 final size:26
Alignment explanation
Indices: 20548112--20548162 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20548102 GGTCTGATCA
*
20548112 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTAGGAATGAACTCCATATGCT
*
20548138 TAGACTAGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCATATGC
20548163 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:20549924 original size:26 final size:26
Alignment explanation
Indices: 20549895--20549947 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20549885 CCGGTCTGAT
*
20549895 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20549921 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20549947 C
1 C
20549948 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20550813 original size:26 final size:26
Alignment explanation
Indices: 20550784--20550834 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20550774 CCGGTCCGAT
*
20550784 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20550810 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
20550835 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20552598 original size:26 final size:26
Alignment explanation
Indices: 20552562--20552614 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20552552 CTGGTCTGAT
20552562 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
20552588 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
20552614 C
1 C
20552615 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:20554812 original size:26 final size:26
Alignment explanation
Indices: 20554776--20554828 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20554766 CCAATCCGAT
20554776 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
20554802 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20554828 C
1 C
20554829 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20557458 original size:868 final size:869
Alignment explanation
Indices: 20554802--20558255 Score: 4611
Period size: 876 Copynumber: 4.0 Consensus size: 869
20554792 ACTTCGTATG
* * * * *
20554802 CTTAGACTGGGAGTGAACTCTGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
20554867 CGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCACCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * *
20554932 TGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCGA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20554997 CCGATGAAACGAGCG-GCGGGCGGGCACCACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGA
196 CCGACGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGA
*
20555061 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
*
20555126 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTT
* * *
20555191 TTCTATTTTTCACGATTTTTGAAACCTTTTGCAGTTCAAGATTTTTTAAACTTTTTTGGAAGGAG
391 TTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAACTTTTTTCGAAGGAG
* * *
20555256 TTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
456 TTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
20555321 TAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTCT
521 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20555386 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
586 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGG
* * *
20555451 TTTGATGAGGGATAGGGGCCCAATATAGGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGC
651 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
20555516 ACACCCACCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCGGGTCAAGTTCTCC-AGTGATG
716 ACA-CCACCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGA-CGATG
* * * * *
20555580 CTCCGACGATGGTGCCCAGGC-AATGAAAAATATGACACCAGGACATGCTCGAGCACAGTATGTG
779 CTCCGACGATGGTGCCCCGACGAAT-AAAAATACGACACCAGCACATGCTCGAGCCCAGTATGTG
*
20555644 CTGCCGCAACCCTC-AGTCCGATCCGAT
843 CTGCCGCAACCCTCGA-TCCGGTCCGAT
* * * * *
20555671 CTTAGATTA-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGCCGTTCAG
1 CTTAGA-CAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
20555735 CCGGCCAGA-GGGTGAGATGCACAAGCTGAGGATCAGTCGGGTCCCCCTCTGCGTGTTGCGGATC
65 CCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
20555799 TTGCTGCCGCAACCCTCGGTGCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20555864 ACCGACGAAACGAGCGATCGGGTGGACGGGCGGGCACTATGCCAGCTAGAGAGACGAGATGCACA
195 ACCGACGAAACGAGCGA-------G-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACA
*
20555929 AGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
20555994 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGA
* * * *
20556059 CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTT
382 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAACTTTTT
* * ** **
20556124 TGGAATGAGTTTTGGCCCCAAACTTGGTAGAAATGATCCTTATATTTTTGTTGGCATGCACAAAA
447 TCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAA
* * * * *
20556189 AAATTTAGATAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAA-TGTCCCCATTTT
512 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
20556252 AGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAAATGCTCTTT-GAGGAGGTGTG
577 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAAGG-GGTGTG
*
20556316 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCAC
640 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
20556381 ATCATGTGCGCACACC-CCCCGGCTCCGCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
705 ATCATGTGCGCACACCACCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCT
* ** * * * * * * * * *
20556445 CCGACGATGCTCTGGTGATAGTGCCCCAATGAAGAAAAATGCGGCACCAGCACAAGCACGAGCCT
770 CCGACGATGCTCCGACGATGGTGCCCCGACGAATAAAAATACGACACCAGCACATGCTCGAGCCC
* * * *
20556510 AGTATGTGCTGTCGTAACCCTTGGTCCGGTCCGAT
835 AGTATGTGCTGCCGCAACCCTCGATCCGGTCCGAT
* * * * *
20556545 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * ** *
20556610 CGGCCAGAGGGGTGGGATGCGTAAG-TCGGGGATCGGTCAGGTCCCCCTCTAAGTGCTGCCCATC
66 CGGCCAGAGGGGCGGGATGCACAAGCT-GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** *
20556674 CTGCTGTCGCAACCCTTAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20556739 TCCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGG
195 ACCGACGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGG
* * * * *
20556804 ATTGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTTGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* * * * *
20556869 GGCTTGTAAATTGATTCAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACTACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGT
* * * *
20556934 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGTGATTTTTTAAAATTTTTTTCGAAGG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTT-AAACTTTTTTCGAAGG
* * * * *
20556999 AGTTTTGGCCCCAAACCTGGTAGACGTCATCCTCGTATTTTTTTTGGCATGCTCAAAAACATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATTCA
20557064 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
20557129 TTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAAGGGGCGTGAGTTCTCGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGA
* * *
20557194 GGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATTGCACATCATGTGC
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
**
20557259 GCACACC-CCCCGG-CCCCCCGATCGTCGGAACCCCAATGTCATCGGTCAGGTTCTCCGACGATG
714 GCACACCACCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATG
* *
20557322 CTCCGACGATGGTGCCCCGACGAAT-AAAATAACGACACCAGCACATGCTTGAGCCCAGCATGCT
779 CTCCGACGATGGTGCCCCGACGAATAAAAAT-ACGACACCAGCACATGCTCGAGCCCAGTATG-T
* *
20557386 -CTGCCGCAACACTCGATCTGGTCCGAT
842 GCTGCCGCAACCCTCGATCCGGTCCGAT
* * *
20557413 CTTAGACAGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAACGAGAGTGTGGGCGCTCAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
20557478 CGGCCAGAGGGGCGGGATGCATAAGCCGAGGAT-GGACTGGGTTCCCCTCCGGGTGTTGCCAATC
66 CGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * ** *
20557542 CTGCTACCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20557607 ACCAACGAAATGAGCGGGCGGGCGGGCGGGCAGGCACTACACCGGCCAGAGAGACGGGATGCACA
195 ACCGACG-AA--A-CGAGCGAGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCACA
* * *
20557672 AGTCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
20557737 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGA
* ** * *
20557802 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAATTCGAGATTTTTTAAAATTTTT
382 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAACTTTTT
* * * ** * *
20557867 TCGAAAGGTGCTTTGGCCCCACACTTAATAGACGTGATCC-CTGTATTCTTGTTGGCATGCATAA
447 TCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTC-GTATTTTTGTTGGCATGCACAA
*
20557931 AAAAATTCTGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
20557996 TTAGACACTTTAATGGCAACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
* * *
20558061 AGTTCTCGAGGTTTGATGAGGGATAAGGAGCTAATATAAGGGCCAAGTACCAGCACCCATCGCAC
640 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
20558126 ATCATGTGCGCACACCACCCCTGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTC
705 ATCATGTGCGCACACCACCCC-GGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTC
* * ** ** * * *
20558191 TCCGATGATGCTCCGGCGATGGTGCCTTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
769 TCCGACGATGCTCCGACGATGGTGCCCCGACGAATAAAAATACGACACCAGCACATGCTCGAGCC
20558256 GGCCAGAGGG
Statistics
Matches: 2247, Mismatches: 298, Indels: 70
0.86 0.11 0.03
Matches are distributed among these distances:
867 211 0.09
868 492 0.22
869 168 0.07
870 53 0.02
871 1 0.00
872 11 0.00
874 178 0.08
875 180 0.08
876 538 0.24
877 322 0.14
878 2 0.00
879 86 0.04
880 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (869 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAACTTTTTTCGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCACCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCT
CCGACGATGGTGCCCCGACGAATAAAAATACGACACCAGCACATGCTCGAGCCCAGTATGTGCTG
CCGCAACCCTCGATCCGGTCCGAT
Found at i:20559081 original size:26 final size:26
Alignment explanation
Indices: 20559052--20559104 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20559042 CCGGTCCGAT
*
20559052 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20559078 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20559104 C
1 C
20559105 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20560114 original size:904 final size:899
Alignment explanation
Indices: 20558274--20560743 Score: 3457
Period size: 904 Copynumber: 2.7 Consensus size: 899
20558264 GGGCGGGTTG
* * * * *
20558274 CACAAGTCA-GGGATCGACCGAGTCTCCCTCTGCATGCTGCCAATCCTGCTGCTGCAACCCTTGG
1 CACAAG-CAGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACTGCAACCCTTGG
* *
20558338 TCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGT
65 TCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGT
* * * *
20558403 GGGCGGGCAGGTAGGCAGGCACTTCGCCGGCCAGAGAGACGGGATGCGCAAGCCTTGTATCGATA
130 GGGCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
* * *
20558468 TGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
191 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
* * * *
20558533 AAATTCATACAATGGTCCCTTAA-CGCTTCACATGAACTTTCAAGGCAAGACGACTCTTTTTCTA
256 AAATTCATACAATGGTCCCTTAAGC-CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
* * * *
20558597 TTTTTCATGATTTTTGAAACTTTTTGCGGTCCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTC
320 TTTTTCACGATTTTTGAAACTTTTTGCGGTCTGGGATTTTTTAAAATTTTTTC-GAAGGATTTTT
* * *
20558662 GGCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAAAACATTCAGCTAAAA
384 GGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
20558727 ACTCGAAGTGTACAGGA-TTT-TG-----TG-----A------CCATTTCAGACACTTTAATGGC
449 ACTCGAAGTGTACAAGATTTTGTGACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
20558774 TATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTC-AGGGTTTGA
514 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGA
** *
20558838 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTAATAGAACCCATCGCACATCATGTGCGCACACC
578 TGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * * *
20558903 CCCCAGGCCCCCCCAATCGTCGGAACCCCTATTCCGTCGGTCAGGTTCTCCGGCGATGCTCCGAT
642 CCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGGCGATGCGCCGAC
* *
20558968 GATGGTGCCCCGACGAAAAAAAATGCTGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCA
706 GATGGTGCCCCAACGAAAAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCA
** * * *
20559033 ACCCTTTGTCCGGTCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTC
771 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGATGGGAATGAACTC
* * * * *
20559098 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGTCAGCCAACCAGAGGGGCGGGATA
836 CATATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCAGAGGAGCAGGATA
* *
20559162 CACAAGCAGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTACCGCAACCCTTGGT
1 CACAAGCAGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACTGCAACCCTTGGT
* * *
20559227 CTGGTCTAATCTTAGACGGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGTG
66 CTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGTG
* * * * *
20559292 GGCGAGCGGGCGGGCAGTAAGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
131 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTG
*
20559357 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
196 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
20559422 CATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTGC
261 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* ** *
20559487 ACGATTTTTGAAACTTTTTACGGTCTGGGATTTTAAAAAAAAAATTTTT-GAAGGATTTTTGGCC
326 ACGATTTTTGAAACTTTTTGCGGTCTGGGATTTT---TTAAAATTTTTTCGAAGGATTTTTGGCC
*
20559551 CTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAAATTCAGCTAAAAAC
388 C-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAAC
20559616 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
451 TCGAAGTGTACAAGATTTTGTGA-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
20559681 ACTAGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
515 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
20559746 AGGGATAGGAGGCCAATATAAGGGACAAGTACCAGCGCCCATCACACATCATGTGTGCACACCCC
580 AGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* *
20559811 CCGGCCCCCCTGATCGTCGAAACCCCAATGCCGTCGGTCAAGTTCTCCGGCGATGCGCCGACGAT
644 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGGCGATGCGCCGACGAT
* * * *
20559876 GGTGCCCCAACG-AAGAAAATGCAGCACCAGCACGTGTCC-GAGCCCAGGATGTGCTGTCGCAAC
709 GGTGCCCCAACGAAAAAAAATGCAGCACCAGCACATG-CCTGAGCCCAGCATGTGCTGCCGCAAC
* *
20559939 CCTCGGTCTGATCCGATCTTATACTGGGAATGAACTCCGTATGCTTA-GATGGGGAATGAACTCC
773 CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGAT-GGGAATGAACTCC
* * * * *
20560003 ATGTGCCTAAGGCAACCCATGAAACGAGCGTGTGGGCGCTTAG-CAGACCAGAGGAGCAGGATG
837 ATATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA-ACCAGAGGAGCAGGATA
* * * * * * **
20560066 CGCAAGCCGGGGATCGGCTGGGTCCTCCTCTGCGTGCTGCCGATCCTGCTATTGCAACCCTCAGT
1 CACAAGCAGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACTGCAACCCTTGGT
* * * * *
20560131 CTGGT-TCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGGAACGAGCGGGC
66 CTGGTCT-AATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGT
* *
20560195 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAAACGGGATGCTCAAGCCATGGATCGATAGGGT
130 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
* * *
20560260 GGTAGGTGGGTTGAGGGACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
195 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
20560325 TCATACAATGGTCCCTTAAGCCTTCATGTGATGTTTCATGGCAAGACGACTCGTTTTCAATTTTT
260 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
* * *
20560390 CACGATTTTGGAAACTTTCTGCGGT-TCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCC
325 CACGATTTTTGAAACTTTTTGCGGTCT-GGGATTTTTTAAAATTTTTTC-GAAGGATTTTTGG-C
*
20560454 CCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
387 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
20560519 CGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTA
452 CGAAGTGTACAAGATTTTGTGAC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
20560584 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGA
516 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
20560649 GGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCGCACACCCCC
581 GGGATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
*
20560714 CGGCCCCCCCGATCATCGGAACCCCAATGC
645 CGGCCCCCCCGATCGTCGGAACCCCAATGC
20560744 AGCCAGCTAG
Statistics
Matches: 1401, Mismatches: 143, Indels: 62
0.87 0.09 0.04
Matches are distributed among these distances:
884 197 0.14
885 16 0.01
886 40 0.03
887 44 0.03
888 124 0.09
889 2 0.00
895 2 0.00
900 1 0.00
901 11 0.01
902 230 0.16
903 59 0.04
904 465 0.33
905 70 0.05
906 139 0.10
907 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CACAAGCAGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACTGCAACCCTTGGT
CTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGTG
GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
ACGATTTTTGAAACTTTTTGCGGTCTGGGATTTTTTAAAATTTTTTCGAAGGATTTTTGGCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGGCGATGCGCCGACGATGGTGCCC
CAACGAAAAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGATGGGAATGAACTCCATATGCCTA
AGGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCAGAGGAGCAGGATA
Found at i:20562262 original size:26 final size:26
Alignment explanation
Indices: 20562233--20562285 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20562223 CTGATTCGAT
20562233 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
20562259 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
20562285 C
1 C
20562286 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:20563947 original size:26 final size:26
Alignment explanation
Indices: 20563918--20563970 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20563908 CTGGTCCGAT
20563918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20563944 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20563970 C
1 C
20563971 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20565238 original size:897 final size:890
Alignment explanation
Indices: 20563133--20566377 Score: 4412
Period size: 897 Copynumber: 3.6 Consensus size: 890
20563123 AGGCACCAGT
* * * ** * **
20563133 CGGGGATC-AGCCAGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCTAGTC
1 CGGGGATCGA-CCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTC
* *
20563197 CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGGG
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA--------GCGGG
* *** *
20563262 CAGGCGGGCTCTACATTGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
122 CAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
20563327 GGGTTTAGGCACATCTTCATATTTCTTCGTGCCAATGCCATGTTTATGGCTTGTAAATTCATACA
187 GGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
20563392 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGATGATTCGTTTTCTATTTTTCACGATT
252 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
20563457 TTTGAAACTTTTTATGG-TTAAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAACT
317 TTTGAAACTTTTTACGGTTTAA-GATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACT
* *
20563521 TGGTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAACATT-AGCTAAAAACTTAAAGT
381 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCAAAGT
* * *
20563585 GTAGAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
445 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
20563650 GCAAACCTGTAAAATCTCAAATACTCTGTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
510 GCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
20563715 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGGGCATACCCCCGGCCCC
574 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCGGCCCC
* * * * * **
20563780 CCCGATCGTCGGAACCCCAATACTGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCTG
639 CCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCC
* * * * * * * *
20563845 GGGGAAGAAATATGTGGCACCAACACATGCTCGAGCCCAGCATGTGATGCCGCAACCCTCGGTCT
704 GGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGATGCCGCAACCCTCGGTCC
*
20563910 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
769 AGT-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * * *
20563975 GTCAACCCACGAATCAAGCTTGTGGGCGTTCAACCGGCCAGAGAGGCGGGATGCACAAGT
833 GTCAACCCACGAAACGAGCATGCGGGC--CCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * **
20564035 AGGGGATCGACCGGGTCCCCCTCTGCTTGCTGCCAATCCTGCTGCCGCAACCCTTGGTCCGGTCC
1 CGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCC
* * * *
20564100 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CAGACAAAACGAGCGGGCGGGTGGG
66 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCA-ACGAAACGAGCGGGCAGGCGGG
* * *
20564164 CACTACGCCGGCCAAAGAGACGGGATGCGCAAGCTGTGGATCGATAGTGTGGTAGGTGGGTTTAG
130 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
20564229 GCACATCTTCATATTTCTGA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
195 ACACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* **
20564293 CTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTTGATTTTTGAAA
259 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
*
20564358 CTTTTTACGGTTTGAGATTTTTTAAAATTTTTTAGGCAA-GAGTTTTGGCCCCAAACTTGGTAGA
324 CTTTTTACGGTTTAAGATTTTTTAAAATTTTTTAGG-AAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
20564422 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGT
388 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
*
20564487 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTT
453 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * * *
20564552 GTACAATCTCAAATGCTCTTTAAGGGGTAGTGAGTTCTCAAGGTTTGATGTGGGATAGCGGGTCA
518 GTAAAATCTCAAATGCTCTTTAAGGGGT-GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
20564617 ATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGTGCACAACCCCTGCCGGCCCCCCCG
582 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAC-A-CCC--CCGGCCCCCCCG
* * * * *
20564682 ATCGCCGAAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTAGCGATGGTGCCCCGGTG
643 ATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGCG
* * ** * *
20564747 AAGAAAAATGCGACACCAGTACATGCCCTAGCCTAGCATGTCCTACCGCAACCCTCAGTCCAGTC
708 AAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGATGCCGCAACCCTCGGTCCAGTC
* * * *
20564812 TAAACTTAGACTGGGAATGAACCCCGTATGCTTAGACTGGGAATGAGCT-CGTATGCCTAAGTCA
773 -GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
*
20564876 ACCCACGAAACGAGCATGCAGGTGCCCAGCCGGCCAGAGGGGTGGGATGCGCAAGC
837 ACCCACGAAACGAGCATGC-GG-GCCCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * *
20564932 CGGGGATC-AGCCGGGTCCCTCTCTACGTGCTGCTGATCCTGCTGCCATAACCCTCATTCCTGTC
1 CGGGGATCGA-CCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTC
* * *
20564996 TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGGCAGGCGGG
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGG
* * *
20565061 CACTACGCCGGTC-GAAGAAACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
130 CACTACGCCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
20565125 GACACATCTTCATATTTCTACGTGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCC
194 GACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
20565190 CTTCAGCCTTTACGTGAAGTTTCATGGCCAGACGACTCGTTTTCTATTTTTGACGATTTTAGAAA
259 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
20565255 CTTTTTACGGTTCT-GGATTTTTTAAAATTTTTTCAGG-AGAAGTTTTGGCCCCAAACTTGGTAG
324 CTTTTTACGGTT-TAAGATTTTTTAAAATTTTTT-AGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
20565318 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAG
387 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
* * *
20565383 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAACAAACC
452 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
20565448 TGTAAAATCTGAAATGCTCTTTAAGGGGGTGAGAGTTCTCGAGGTTTG-TGAGGGATAGGGGGCC
517 TGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
20565512 AATATAAGGGCCAAGTACCAGCACCCATCGCATATAATGTGTGTACACCCCCGGCCCCCCTGATC
581 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCGGCCCCCCCGATC
* * ** * *
20565577 GTCGAAACCCCAATGCCGCCGATCAGGTTCTCCGGGGATGCTCCATTGATGGTGCCCTGCCGAAG
646 GTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGCGAAG
* * * *
20565642 AAAAATGCGACACCAGCACATACCCGAGCCTAGCATGTGGTGCCGCAACCCTCGGTCTGATTCGA
711 AAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGATGCCGCAACCCTCGGTC-CAGTCGA
* *
20565707 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
775 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
20565772 AACGAAATGAGCGTGCGGGCACTCAGCCAGCCAGAGGGGCGGGATGCGTAAGC
840 CACGAAACGAGCATGCGGGC-C-CAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * *
20565825 CGGGGATCGACCGGGTCCCCCTCTGCGTGTTACCGATCTTGCTGCCACAACCCT-AGGTCCGGTC
1 CGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCA-GTCCGGTC
* ** *
20565889 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCGGGCGGG
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA--------GCGGG
* * * *
20565954 CGGGCGGGCACTACGCCGACCAGAGAGACGGAATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
122 CAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
20566019 GGGTTTAGGA-ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCATGTAAATTCATAC
187 GGGTTTA-GACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
20566083 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
251 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * *
20566148 TTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACT
316 TTTTGAAACTTTTTACGGTTTAAGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACT
* *
20566213 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTG
381 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
20566278 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
446 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
20566343 CAAACCTTTAAAATCTCAAATGCTGTTTAAAGGGG
511 CAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGG
20566378 ATCGACCGGT
Statistics
Matches: 2072, Mismatches: 230, Indels: 83
0.87 0.10 0.03
Matches are distributed among these distances:
891 2 0.00
892 165 0.08
893 165 0.08
894 456 0.22
895 7 0.00
896 61 0.03
897 549 0.26
898 172 0.08
899 2 0.00
900 2 0.00
901 388 0.19
902 102 0.05
903 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (890 bp):
CGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGGC
ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGA
CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
TTTTACGGTTTAAGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCGGCCCCCCCGATCGTCGA
AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGCGAAGAAAAA
TGCGACACCAGCACATGCCCGAGCCTAGCATGTGATGCCGCAACCCTCGGTCCAGTCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCATGCGGGCCCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
Found at i:20565759 original size:26 final size:26
Alignment explanation
Indices: 20565708--20565760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20565698 CTGATTCGAT
* *
20565708 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20565734 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20565760 C
1 C
20565761 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20567189 original size:26 final size:26
Alignment explanation
Indices: 20567160--20567212 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20567150 CCGGTCCAGT
20567160 CTTAGACCGGCAATGAACTCCGTATG
1 CTTAGACCGGCAATGAACTCCGTATG
* * *
20567186 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACCGGCAATGAACTCCGTATG
20567212 C
1 C
20567213 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGCAATGAACTCCGTATG
Found at i:20568094 original size:26 final size:26
Alignment explanation
Indices: 20568056--20568134 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20568046 CCAGCCCAAT
20568056 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20568082 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20568108 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20568134 C
1 C
20568135 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20569025 original size:25 final size:26
Alignment explanation
Indices: 20568982--20569033 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
20568972 CTGGTCCGAT
20568982 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20569008 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20569033 C
1 C
20569034 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20569923 original size:26 final size:26
Alignment explanation
Indices: 20569885--20569936 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20569875 CCGGTCTGAT
*
20569885 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
20569911 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20569937 AATAACTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20570218 original size:903 final size:901
Alignment explanation
Indices: 20566376--20573159 Score: 8243
Period size: 903 Copynumber: 7.5 Consensus size: 901
20566366 TGTTTAAAGG
* * * * ** ** *
20566376 GGATCGACCGGTTCCCCCTCTGCGTGCTGCCAATCCTGCTACTGCAACCCTTGGTCCTG-TTTGG
1 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTTCATCC-GATCCGA
* * * *
20566440 TCTTAGACT-GGAATGAACTTCGTATGCCTAAGCCAAGCGAAGAAACGAGTGGGCGGGCTGGCGG
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG-CGGCGGGCTGGCGG
* * * *
20566504 GTGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGG
129 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** *
20566569 TTTAGGTACATCTTCATATTTCTGTGTGCCTATGCCATTTTTATGGCTTGTAAATTCATACAATG
194 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
20566634 GTCCTTTAAGCCTTCACGTGAAGTTTCATGGCACA-ATTACTCGTTTTATATTTTTCACGATTTT
259 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA-AGATGACTCGTTTTCTATTTTTCACGATTTT
* ** * ****
20566698 TAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTAAAAAAAGG-TGTTTTGGCCCCAAACTTG
323 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAT-TTTTGGCCCCAAACTTG
* * *
20566762 GTAAACGTCATCCTTTTATTTTTGTTGGCATGCACAAAAAACA-TCAGCTAAAAACTCGAAGTGT
387 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGT
* *
20566826 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACATTTTAATGGCTACTGGCAGC
451 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
20566891 AAGCCTATAAAATCTCAAATGCTGTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
516 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
20566956 GGACCAATATAAGGGCCAAGTACCAACACCCAACGCACATCATGTGCGCAAACCCTCCCCGGCCC
581 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCC
* * * * * *
20567021 CCCCAATCGCCTGAACCCCAATGCCGTGGGTCAGGTTCGCCGGCGATGATCCGACGATGGTGCCC
644 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
* * * * **
20567086 TGACGAAGAAAAACGCGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGTCGCAACCCTCGGTC
709 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
* * * *
20567151 CGGTCCAGTCTTAGACCGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
774 CGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
20567216 AGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAGCCAAAAGGGCGGGATGGGCAAGCTGG
839 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GA
** ** * * ** * * *
20567280 GGATCGATCGGGTCCCCCTCCACGTGCTACTGATCCTGCTGCTGCAACCCTTGGTCTGGTCTGAT
1 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTTCATCCGATCCGAT
* * * * *
20567345 GTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCAACCAATGAAACGAGCGG-GAG--GGCGTGC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCGGGCTGGCGGGC
* *
20567407 GGGCACTACGCCGGCCACAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTT
131 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
20567472 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
196 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
20567537 CCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATGTTCTATTTTTCATGATTTTTGA
261 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
20567602 AACTTTTTGCGG-TCTGAGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCATACTTGGT
326 AACTTTTTACGGTTC-GGGATTTTTTAAAATTTTTTCGA-AAGGATTTTTGGCCCCAAACTTGGT
* * * * * *
20567665 ACACGTGATTCTTGTATTTTTGTTGGCATGTAGAAAAAACTTCAGCTAAAAACTTGAAGTGTACA
389 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
20567730 AGATTTTGTGACCATTTGAAAGAAA-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
454 AGATTTTGTGACCATTTGAAA-AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
20567794 ACCTGTAAAATCTGAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
518 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * ** * *
20567859 GCCAATATAAGGGCCAAATATCAGCACCCATCGTGCATCATTTGCGCACACCCCCCGG-CCCCCT
583 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
** * * ** * *
20567923 GATCGTCAAAACCTCAATGTCACCGATCAAGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
648 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* * ** *
20567988 GAAGACAAATGC-ACACCAGCACATGCCCGAGCCTTGCATGTGTTACC-CAACCCTCGGTCCAGC
713 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC-G----G-
* *
20568051 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTCGGAATGAACTCCGTATGCTTAGACT
772 ----TC-----C---G---G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
20568116 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGTGGGCGCTCAGCCGGCC-GA
817 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* ** **
20568180 GGGACAAGATGCGCAAGTTA
882 GGGGCGGGATGCGCAAGCGA
* * * * ** * **
20568200 GGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCTTACTACCACAACCCTT-AGTCCGGTCTA
1 -GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTTCA-TCCGATCCG
* * * * * * *
20568264 ATCTTATACTGGGACTGAACTCCGTATGCCAAAGCCAACCGACGAAACGAACGGGCGGGCGGGCA
64 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-GGCGGGCTGGCG
* * * *
20568329 GGCGGGCACTATGCCGACCAGAGAAACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGG
128 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
20568394 GTTTAGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAGT
193 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
20568459 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
258 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
* * * *
20568524 AGAAAATTTTTACGGTTCGGGATTTTTCAAAATTTGTTT-GGAAGG-TGTTTTGGCCCCAAACTT
323 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT-TTTCGAAAGGAT-TTTTGGCCCCAAACTT
* * * * *
20568587 GGTAGACGTGATCCTTGTATTTTTATTGGCTTGCACAAAAAAATTTAGCTAAAAACTGGAACTGT
386 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * * *
20568652 ACAAGATTTTGTAACCATTTAAAAAAAGTATCCCCATTCCAGACACTTTAGTGGCTACTGGCAGC
451 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
20568717 AAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCCCG-GGTTTGATGAGGGATAGG
516 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
20568781 GGGCCAATATAAGGGACAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCTGG-CCCC
581 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * * * *
20568845 CCGATCGTCGAAATCCCAATGCCGCCTGTCAAGTTCTCCGGCGATGCTCCGACGATGGTGCCCTG
646 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
* * * * *
20568910 ACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCTGC-GCATGTGCTGCCACAACCCTCGGTCT
711 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC-CCAGCATGTGCTACCGCAACCCTCGGTCC
*
20568974 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAA
775 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
20569038 GTCAACCCACGAAGCAAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCAGGATGCTCAAGCAGA
840 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GA
* * ** * **
20569101 GGATTGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTCCCACAACCC-TCAGTCCGATCCGA
1 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTTCA-TCCGATCCGA
* *
20569165 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGGCGG
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCG-GCGGGCTGGCGG
* * * *
20569230 GCGGGCACTACGCCGTCCAGAGAGACGTGATGCACAAGCCGTGGATCGATAGGGTGGTCGGTGGG
129 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
** *
20569295 TTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATG
194 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *** *
20569360 GTCCATTAAGCCTTCACATGAAGTTTTATGGCAAGACCTCTCGTTTTCTATTTTTCATGATTTTT
259 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTT
** *
20569425 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTTTCCCCAATCTTGGT
324 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGT
* *
20569490 AGACGTGATACTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACA
389 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
20569555 AGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAA
454 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
20569620 CCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGG
519 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
20569685 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCACGGCCCCCCC
584 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCC
* * * **
20569750 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGGT
648 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* *
20569815 GAAGAAAAATACGGCACCAGAACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGT
713 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGT
** * * ** *
20569880 CTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGAATAACTC
778 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
20569945 AACCCACGAAATGAGTGTGCGGGCGTTCAGTCGCCCAGAGGGGCGGAATGCGCAAGCGA
843 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCGA
* * * * * *
20570004 GGATCGACCGGGACCCCCTCAGCGTGCTGCCGATCTTGTTGCTGCAACCCTTCATCCGATCTGAT
1 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTTCATCCGATCCGAT
* *
20570069 CTTAGACTGGGAATGAACTCTGTATGCGTAAGCCAACCGATGAAACGAGCGGCCGGGCTGGCGGG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGG-CGGGCTGGCGGG
* * * * * *
20570134 CGGGCAATACGTCGGCCAGATAGACGGTATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGT
130 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
20570199 TTAGGCACATCTTCATATTTCAGCATGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGG
195 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
20570264 TCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCTCGATTTTTA
260 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTG
** * *
20570329 AAACTTTTTGGGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
325 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTA
*
20570394 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAA
390 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
20570459 CATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAGTGGCAGCAAAA
455 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
20570524 CTGTAAAATCTCAAATGATTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGGATAGGGGGC
520 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
20570589 CAATATAAGGACCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCGGCCCC
585 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC--CCCC
** * * * * * *
20570654 TTCGATCACCGGAACCCTAATGCCATCGGTCAGGTTCTACGGCGATGCTCCGGCGATGGTG-TCG
647 --CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* *
20570718 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCT
710 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCC
* **
20570783 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAGA
775 GGTCCAATCTTAGACTGGGAATGAACTCCGTA----T-G-CT----T--A----G-A---CT-G-
* ** *
20570848 CTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAAGTGCTCAGCCGGCCAG
818 --GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * *
20570913 AAGGGTGGGATGCGCAAGCCA
881 AGGGGCGGGATGCGCAAGCGA
* * * ** ** * *
20570934 GGGATCGGTCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCACAA-CCTTCGATTTGGTCCA
1 -GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTTC-ATCCGATCCG
* * * * * *
20570998 ATCTTAGACTTGGAATGAGCTCTGTATGCCTAAGCCAACCGACGAAACGA---GCAGGCT-GCGA
64 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCGGGCTGGCGG
** * * *
20571059 GCGGGCACTACGTTGGCCAGAGAGATGAGACGCGCAA-CTCGTGGATCGATAGGGTGGTAGGTGG
129 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC-CGTGGATCGATAGGGTGGTAGGTGG
**
20571123 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
193 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
20571188 GGTCTCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGATGACTCGTTTTTTATTTTTCACGATTTT
258 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
* * * *
20571252 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCCAAACTTG
323 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGG-CCCCAAACTTG
* *
20571317 GTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAAATTCAACTAAAAACTCGAAGTGT
387 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
20571382 ACAAGATTTTGTAATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
451 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
20571447 AAACCTGTAAAATCTTAAATGCTGTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
516 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
20571511 GGGCCAATATAAGGTCCAAGTACCAGCACCCATCACATATCATGTGCGTACACCCCCCGGCCCCC
581 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * * *
20571576 CTGATCGTCGGAACCCCAATGTCGTCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGTG-CCCG
646 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
* * * * ** * *
20571640 ACAAAGTAAAATGAGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCTG
711 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCG
*
20571705 GTCCAATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
776 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
20571770 TCAACCCACGAAACAAGCGTACGGGCGCTCAGCCGGCCAGAAGGGCAGGATGCACAAGCCGG
841 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGA
* * * * * * *
20571832 GGATCGGCC-GGTCCCCCTCTGCATGGTACTGAT-C--CTACTGCAACCC-TCGGTCTGATCCGA
1 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTTC-ATCCGATCCGA
*
20571892 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGG-GCGG-TGGGCG
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCG-GGCT-GGC-
* * *
20571955 GGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTGGGTG
127 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
20572020 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAA
192 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
** * * *
20572085 TTCTCCCTTAAGCCTTCACGTGAAGGTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGA-TT
257 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTT
* * * * * * *
20572149 TTCAAACTTTTTTCAGTTCGGGACTTTTTAAAATTTTTTCAAAACGAGTTTT-GCCCCAAACTTG
322 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTG
* *
20572213 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACCAAAACATTCAGCTAAAAACTCGAAGTGTA
387 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
20572278 CAAGATTTTCTGAACTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCTGCA
452 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
20572343 AACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
517 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * *
20572408 GGCCAATATACGGGCCCAGTACCAGCACCCATCGTACATAATGTAG-G--CACCCCCCGGGCCCC
582 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-GCGCACACCCCCCGGCCCCC
* * * * * * * *
20572470 CTGATCGTCAGAACCCCAATGCCGCCGGTCGGGTTCTCCGGTGATGGTGCCCCGACGAAGAAAAA
646 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA---TGCTCCGACGATG----G
** * *
20572535 TGCGAC-AC-CAG-AACATGCCCGAGC-CCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
704 TGCCCCGACGAAGAAAAATG--CG-GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
* * * *
20572596 CGTCTGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCG
766 CCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * *
20572661 TATGCCTAAGTTAACCCACGAAACGAGCATGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGC
831 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
*
20572726 AAGCCGG
896 AAG-CGA
** * * * *
20572733 GGATCGGTTGGGTCCCCCACTGCGTGCTGCCAATCCTACAGCCT-CAACCC-TCAATCC-AGTCC
1 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG-CTGCAACCCTTC-ATCCGA-TCC
* * *
20572795 GATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GC--G--GGAG
63 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCGGGCTGGCG
** *
20572853 GGCGGGCACTACGCCGGTTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
128 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
20572918 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAAC
193 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
20572983 GGTCCCTTAAGCTTTCACGTGAAGTTTCAAGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
258 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
* * * ** *
20573048 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTATCCCCAAA-TGTT
323 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACT-TG
* * *
20573112 TTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
387 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
20573160 ACATTGCTAC
Statistics
Matches: 5095, Mismatches: 656, Indels: 263
0.85 0.11 0.04
Matches are distributed among these distances:
893 60 0.01
894 55 0.01
895 114 0.02
896 150 0.03
897 296 0.06
898 306 0.06
899 152 0.03
900 551 0.11
901 693 0.14
902 32 0.01
903 726 0.14
904 139 0.03
905 103 0.02
906 94 0.02
907 52 0.01
908 1 0.00
909 1 0.00
910 1 0.00
911 3 0.00
912 2 0.00
914 1 0.00
915 2 0.00
916 4 0.00
917 2 0.00
918 1 0.00
920 3 0.00
921 242 0.05
922 89 0.02
923 7 0.00
924 145 0.03
925 501 0.10
926 288 0.06
927 117 0.02
928 1 0.00
930 73 0.01
931 88 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTTCATCCGATCCGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCGGGCTGGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCA
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCGA
Found at i:20570868 original size:25 final size:25
Alignment explanation
Indices: 20570793--20570870 Score: 138
Period size: 25 Copynumber: 3.1 Consensus size: 25
20570783 GATCTGATCT
*
20570793 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACT-GGAATGAACTCCGTATGCC
20570819 TAGACTGGAATGAACTCCGTATGCC
1 TAGACTGGAATGAACTCCGTATGCC
20570844 TAGACTGGAATGAACTCCGTATGCC
1 TAGACTGGAATGAACTCCGTATGCC
20570869 TA
1 TA
20570871 AGTCAACCCA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 45 0.88
26 6 0.12
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (25 bp):
TAGACTGGAATGAACTCCGTATGCC
Found at i:20571748 original size:26 final size:26
Alignment explanation
Indices: 20571712--20571764 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20571702 CTGGTCCAAT
20571712 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
20571738 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20571764 C
1 C
20571765 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:20572567 original size:17 final size:17
Alignment explanation
Indices: 20572542--20572581 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
20572532 AAATGCGACA
*
20572542 CCAGAACATGCCCGAGC
1 CCAGCACATGCCCGAGC
20572559 CCAGCACATGCCCGAGC
1 CCAGCACATGCCCGAGC
20572576 CCAGCA
1 CCAGCA
20572582 TGTGCTACCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.45, G:0.23, T:0.05
Consensus pattern (17 bp):
CCAGCACATGCCCGAGC
Found at i:20572642 original size:26 final size:26
Alignment explanation
Indices: 20572613--20572665 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20572603 CCGATCCAAT
20572613 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20572639 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20572665 C
1 C
20572666 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20573478 original size:26 final size:26
Alignment explanation
Indices: 20573442--20573494 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20573432 TTGGTCCGAT
*
20573442 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20573468 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20573494 C
1 C
20573495 CTAAGTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20575217 original size:26 final size:26
Alignment explanation
Indices: 20575179--20575231 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20575169 CTGATCTGAT
20575179 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20575205 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20575231 C
1 C
20575232 CTAAGTCCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20576081 original size:26 final size:26
Alignment explanation
Indices: 20576052--20576104 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20576042 CTGGTCCGAT
*
20576052 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
20576078 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20576104 C
1 C
20576105 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:20576982 original size:26 final size:26
Alignment explanation
Indices: 20576946--20576998 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20576936 CTGGTTCGAT
20576946 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
20576972 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
20576998 C
1 C
20576999 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:20577879 original size:26 final size:26
Alignment explanation
Indices: 20577841--20577893 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20577831 CCAGTTTGAT
* *
20577841 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20577867 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20577893 C
1 C
20577894 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20578024 original size:895 final size:891
Alignment explanation
Indices: 20574276--20578390 Score: 5247
Period size: 895 Copynumber: 4.7 Consensus size: 891
20574266 TGGTGCCCCG
* *
20574276 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTA
1 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
** **
20574341 GACTGGGAATGAA-TTCTGTATGCCTAAGTCAACCCACGAAATTAGCGTGCGGGCATTCAGCC-G
66 GACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
** * * * *
20574404 CCTAGAGGGGCGGGATGCA-CATA-CCGGGGATCGACCGGGTCCTCCTCTGCGTGTTGCCGATCT
130 CC-AGAGGGGCGGGATG-AGCA-AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * * * * * **
20574467 TGCTACTGCAA-CCGTCGATCCAGTCTGATCTTAGACTGTGAATGAACTTCATACGCCTATTCCA
192 TGCTGCCGCAACCCTTCG-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
20574531 ACCGATGAAACGAGCGGGCGGGCGGGCGGGCAGGTACTATGCCGACCAGAGAGACGGGGTGCGCA
256 ACCGACGAAACGA----GCGGACGGGCGGGC----ACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
20574596 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCACATTTCTGTGTGCCAATGCC
313 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCGTGCCAATGCC
20574661 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
378 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
20574726 CGACTCGTTTTCTACTTTTCACGATTTTTGAAA-TGTTTTACGGTTCCGAATTTTTTAAAATTTT
443 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACT-TTTTACGGTTCAGGATTTTTTAAAATTTT
* * *
20574790 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCTTTCTATTTTTGTTGGCATG--C--
507 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
20574851 --------A-C---AAA----AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
572 AAAAAATTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
20574900 TCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGA
637 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGA
* *
20574965 GTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
702 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
20575030 TCATGTGCGCACACCCCCCGG--ACCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC-
767 TCATGTGCGCAC-CCCCCCGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCA
* * * * *
20575092 C---G----G-CTATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCAAGCCC
831 CGGTGCCCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
* * * *
20575145 AG-ATGTGCTGCCGCAACCCTTGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTA
1 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * *
20575209 GACTGGGAATGAACTCCGTATGCCTAAGTCCACCCACGAAACGAGCGTGTGGGCACTCAACCAGC
66 GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** * *
20575274 CAGAGGGGCGGGATGTGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGGCAATCCTGTT
131 CAGAGGGGCGGGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
* * * *
20575339 GCCACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
196 GCCGCAACCCTTCGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * ** *
20575404 CAAAACGAGCGGTCGGGCGGGC-C-A-----G--A-A-AGATAGGATACGCAAGCCGTGGAAT-G
261 CGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG-ATCG
* * *
20575457 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGGCAATGCCATTTTTATGGCT
325 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCGTGCCAATGCCATTTTTATGGCT
* *
20575522 TGTAAATTCATACGATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGACTCGTTTTC
390 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
** * * *
20575587 TATTTTTCACGATTTTCAAAACCTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGATGGAGTT
455 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
20575652 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATAGTTAGCTA
520 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTAGCTA
20575717 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
585 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
20575782 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGTGTGAGTTCTCAAGGTTT
650 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTT
* *
20575847 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCTTCGCACATCATGTGCGCACA
715 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA
* * *
20575912 CCCCCCCGGCCCCCCCGATCATCGAAACCCCAAT---ATC-GTC-GG---TCA-GGTTCCTCGAC
778 CCCCCCCGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCACGGTGCCCCGAC
* * * * * * *
20575968 GTTAGTGCCCTGGCGAAGAAAAATGTGACACCGGCACATGACCGAGCCC
843 GATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
* * * *
20576017 AGCATTTGCTGTCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
1 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
20576082 GACTGGAAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG
66 GACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* ** ** * * * * *
20576146 CCAGAGGGGCGGAATGCCCAAGTAGGGGATCGTTCGTGTCCCCCTCTGTGTGCTATCGATCCTAC
130 CCAGAGGGGCGGGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGC
* * * *
20576211 TACCGCAACCC-TCGGTCTGGTCTAATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
195 TGCCGCAACCCTTCGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
20576275 GATGAAATGAGCGGGCGGGTGGTCGGGCGGGCACTTCGCCGACCAGAGAGACGAGATGCGCAAGC
259 GACG-AA--A-CGAGC----GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
20576340 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
316 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCGTGCCAATGCCATT
*
20576405 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGA
381 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
20576470 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCG
446 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG
*
20576535 GAAGGAGTTTT-CCCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAA
511 GAAGGAGTTTTGGCC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
20576598 AAATTCAGCTAAAAACTTGAACTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCTATTTC
575 AAATT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
20576663 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAG
639 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
* * *
20576728 TTCTTGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACAT
703 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
20576793 CATGTGCGTA------C--ACCCCCCGATCACCGAAACTCCAATGCCGCCGGTTAGGTTCTCCGG
768 CATGTGCGCACCCCCCCGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCT-C-A
* * * *
20576850 CGGTGCTCTGACGATGGTGCCCAGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
831 CGGTGCCCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
* * * * * *
20576911 AGCATGCGCTGGCACAACCCTCGGTCTGGTTCGATCTTAAACTGGGAATGAACTCCATATGCTTA
1 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
20576976 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGC
66 GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * *
20577041 CAGAGGGGCGAGATGAGCAAGCCGGGGATCGATCGGGTCCCCCTTTGCTTGCTTCCGATCCTACA
131 CAGAGGGGCGGGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
*
20577106 GCCGTAACCCTT--TCTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
196 GCCGCAACCCTTCGT-TC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*
20577169 GACGAAACGAGCGGACGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC-TAGGAT
259 GACGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT-GGAT
* * * *
20577233 CGATAGGGTAGTAGGTGGGTTTAGGCACATCTTTACA-TTCATACGTTCCAATGCCATTTTTATG
323 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTC-TGCGTGCCAATGCCATTTTTATG
* *
20577297 GCTTGTAAATTCATACAATGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTT
387 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** ** *
20577362 TTCTATTTTTCATAATTTTTGAAACTTTTTACGACTCGGGA-TTTTTAAAATTTTTTCGGAAGGA
452 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGA
* * * * *
20577426 GTTTTGGCCCCAAACTTGGTAGATGTGGTCCTTTTATTTTTTTTGTCATGCACAAAAAAAATTAG
517 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTAG
* * *
20577491 GTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTGAGACACTT
582 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
20577556 TAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAG
647 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAG
*
20577621 GTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACG
711 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--G
* * *
20577686 CGCACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGC
774 CGCACCCCCCCGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCT-C-ACGGTGC
* **
20577751 CCCGACGATGGTGCCCCGGCGAAGAAAAATGCGACACCAGCACATGCTTGAGCCC
837 CCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
** ** *
20577806 AGCATGTGCTGCCGCAACCCTCGGTCCAGTTTGATCTTAGATTGGGAATGAACTCCGTATGCTTA
1 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
20577871 GACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGCGCTCAGTCGGC
66 GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* *
20577936 CAGAGGGGCGGGATGAGCAAGCCGGGGATCGGTTGGGTCCCCCTTTGCGTGCTACCGATCCTGCT
131 CAGAGGGGCGGGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
** * * *
20578001 GCTACAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCAA
196 GCCGCAACCCTTCGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* *
20578066 CGAAACGAGCCGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
261 CGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
20578131 TAGGGTGGTAGGTGGGATTAGGCACGTCTTCATAATTCTACGTGCCAATGCCATTTTTATGGCTT
326 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * *
20578196 CTAAA-TCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTT
391 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
20578260 ATTTTTCACGA-TTTTGAAAACATTTTGCGGTTCAGGATTTTTCAAAATTTTTTCGGAAGGAGTT
456 ATTTTTCACGATTTTTG-AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
20578324 TTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAAATTCAGCT
520 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATT-AGCT
20578388 AAA
584 AAA
20578391 CCTGTCAAAT
Statistics
Matches: 2824, Mismatches: 320, Indels: 178
0.85 0.10 0.05
Matches are distributed among these distances:
849 242 0.09
850 3 0.00
851 2 0.00
858 1 0.00
859 1 0.00
861 1 0.00
862 1 0.00
864 15 0.01
865 3 0.00
867 3 0.00
868 217 0.08
869 188 0.07
870 8 0.00
871 4 0.00
872 66 0.02
873 213 0.08
874 2 0.00
876 1 0.00
877 4 0.00
881 12 0.00
882 1 0.00
883 22 0.01
884 2 0.00
885 249 0.09
886 212 0.08
887 6 0.00
888 2 0.00
890 5 0.00
891 15 0.01
892 355 0.13
893 85 0.03
894 360 0.13
895 516 0.18
896 6 0.00
897 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
GCCGCAACCCTTCGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCC
CCCCGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCACGGTGCCCCGACGAT
GGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
Found at i:20578686 original size:26 final size:26
Alignment explanation
Indices: 20578657--20578709 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20578647 CCAGTCCAAT
20578657 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20578683 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20578709 C
1 C
20578710 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20579592 original size:26 final size:26
Alignment explanation
Indices: 20579554--20579605 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20579544 CAATTTGATG
* *
20579554 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGCGAATGAACTCCGTATGC
20579580 TTAGACTGCGAATGAACTCCGTATGC
1 TTAGACTGCGAATGAACTCCGTATGC
20579606 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCGTATGC
Found at i:20580257 original size:252 final size:253
Alignment explanation
Indices: 20579812--20580311 Score: 824
Period size: 252 Copynumber: 2.0 Consensus size: 253
20579802 TACGTCAACA
* * * *
20579812 AGAGAGACGGGATGCGCAAGTCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGTACATCTTCATA
1 AGAGAGACGGGATGCACAAGCCGTGGATCGATAGAGTGGTAGCTGGGTTTAGGCACATCTTCATA
*
20579877 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
66 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
20579942 TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTCAAAACCTTTTACGGTTTG
131 TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTCAAAACCTTTTACGGTTTG
* * * *
20580007 GGATTTTTTTAAATTTTTT-GGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTCGGCC
196 AGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCGGCC
* *
20580064 AGAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATGCACAAGCCGTGGATCGATAGAGTGGTAGCTGGGTTTAGGCACATCTTCATA
*
20580129 TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
66 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
** *
20580194 TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACA-ATTTTTGAAACTTTTTACGGTTT
131 TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA-AGATTTTCAAAACCTTTTACGGTTT
* *
20580258 GATATTTTTTAAAATTTTTTCGAAAGGGGTTTTGGCCCCAAACTTGGTAGACGT
195 GAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
20580312 GATCCTTGTA
Statistics
Matches: 229, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
252 198 0.86
253 31 0.14
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (253 bp):
AGAGAGACGGGATGCACAAGCCGTGGATCGATAGAGTGGTAGCTGGGTTTAGGCACATCTTCATA
TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTCAAAACCTTTTACGGTTTG
AGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCGGCC
Found at i:20581615 original size:689 final size:689
Alignment explanation
Indices: 20580293--20581652 Score: 2053
Period size: 689 Copynumber: 2.0 Consensus size: 689
20580283 GGGGTTTTGG
* *
20580293 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAA
1 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
20580358 CTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGT
66 ATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAAACACTTTAATGGT
**
20580423 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
131 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* * *
20580488 AGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATTGCACATCATGTGCGGACACCCC
196 AGGGATAGGGGGCCAATATAACGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * * * *
20580553 CCGGCCCGCCCGATCACCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTTTGGCGAT
261 CCGACCCCCCCAATCACCGAAACCCCAATACCACCGGTCAGGTTCTCCGGCGATGCTCTGACGAT
*
20580618 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGGATGTGCTACCGCAACC
326 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
* *
20580683 CTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCACCGAAACGAG
391 CTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCACCGAAACGAG
* * * * **
20580748 TGGGCTGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCATGAGCCGTGGATAGATAAGG
456 CGGGCGGGCGGGCGGGCACTACGCCAGCCAAAGAGACGGGATGCACAAGCCGTGGATAGATAAGG
* * * *
20580813 TGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAA
521 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATCGCTTGTAAA
* *
20580878 TTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCCTGCCAAGACGACTCATTTTCTATTTT
586 TTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCCTGACAAGACGACCCATTTTCTATTTT
* *
20580943 TCATGATTTTTAAAACCTTTTGCAGTTGAGGATTTTTCT
651 TCACGATTTTCAAAACCTTTTGCAGTTGAGGATTTTTCT
*
20580982 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAA
1 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
20581047 ATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGC
66 ATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAAACACTTTAATGG-
* * * *
20581112 TATTGGTAGGAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTGC-CAAGGTTTGA
130 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CTCAAGGTTTGA
*
20581176 TGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACC
194 TGAGGGATAGGGGGCCAATATAACGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACC
* *** * * *
20581241 TCCCGACCCCCCCAATTGTCGAAACCCCATTACCGCCGGTCAGGTTCTCCGGTGATGCTCTGACG
259 CCCCGACCCCCCCAATCACCGAAACCCCAATACCACCGGTCAGGTTCTCCGGCGATGCTCTGACG
** * * *
20581306 ATGGTGCCCCGGTGAA-AAAAATGTGGCATCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAA
324 ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
** **
20581370 CCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAAC
389 CCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-ACCGAAAC
* * *
20581434 GAGCGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCCCAAGCCGTGGATCGATA
453 GAGCGGGCGGGCGGGCGGGCACTACGCCAGCCAAAGAGACGGGATGCACAAGCCGTGGATAGATA
* **
20581499 AGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTATGTGCCAATGCCATTTTTATCGCTTGT
518 AGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATCGCTTGT
* *
20581564 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAC-GACAAGACGACCCGTTTTCTA
583 AAATTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTC-CTGACAAGACGACCCATTTTCTA
*
20581628 TTTTTCACGATTTTCAAAACTTTTT
647 TTTTTCACGATTTTCAAAACCTTTT
20581653 ACGGTTCGAG
Statistics
Matches: 600, Mismatches: 67, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
689 416 0.69
690 183 0.31
691 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (689 bp):
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
ATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAAACACTTTAATGGT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
AGGGATAGGGGGCCAATATAACGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCGACCCCCCCAATCACCGAAACCCCAATACCACCGGTCAGGTTCTCCGGCGATGCTCTGACGAT
GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
CTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCACCGAAACGAG
CGGGCGGGCGGGCGGGCACTACGCCAGCCAAAGAGACGGGATGCACAAGCCGTGGATAGATAAGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATCGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCCTGACAAGACGACCCATTTTCTATTTT
TCACGATTTTCAAAACCTTTTGCAGTTGAGGATTTTTCT
Found at i:20582822 original size:26 final size:26
Alignment explanation
Indices: 20582786--20582838 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20582776 CTGGTCCAAT
20582786 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20582812 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20582838 C
1 C
20582839 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20583721 original size:26 final size:26
Alignment explanation
Indices: 20583685--20583737 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20583675 CTGGTCCAAT
20583685 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
* *
20583711 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
20583737 C
1 C
20583738 CTAGGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:20584205 original size:888 final size:889
Alignment explanation
Indices: 20581910--20588131 Score: 7767
Period size: 868 Copynumber: 7.0 Consensus size: 889
20581900 CCGGTCTGAT
* * * *
20581910 CTTAGTCTGGGAATGAAGTCCGTATGCCTAAGTCAACCTATGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
20581975 C-AGCCAGAGGGGCGGGATGCGTAAGCCGGGGAAC-AGCTGGGTCCCCCTCTACGTGCTGCCGAT
66 CGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * *
20582038 CCTACTGCCGCAACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAAGTTCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
20582103 AACTGACGAAACTAGCGGGCGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGCATGCGC
194 AACCGACG-AA--A---------CGAGCGTGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
**
20582168 AAGCCGTACATCGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
247 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* * *
20582232 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGCTACATGGCAAG
312 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
20582297 ACGACTCGTTTTTTATTTTTCACAATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
377 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTATGCGGTTCGGGATTTTTTAAAATTTT
* * * * * * *
20582362 TTTGAAAAGCGTTTTGGCCCCAAACTTGGTAGGCGGGATCCTTGTGTTTTTGTTGGCATGCACAA
442 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
20582427 AAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATG
507 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
20582492 TCAGACACTTTAATTGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTG
572 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * ** *
20582557 AGTGCTCAAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCATAG
637 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
20582622 ATCATGCGCACACACCCCCCGGCCTCCCCAATCGTCGGAACGCCAATGCCACTGGTCAGGTTCTC
702 ATCATGTGCGCACA-CCCCCAGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * * *
20582687 CGACGATGCTACAACAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACCTGCCCAAGCCCA
765 CGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** * *
20582752 GCATGTGCTATCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
830 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20582812 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
20582877 CGGCCAAAGGGGCGGAATGCGCAAGCCAGGGATCGA-CCGGTCCCCCTCTGCGTGCTACCGATCC
66 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * *
20582941 TGCTGCCGTAACCCTCAATCTGGT-TCGATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20583005 ACTGACGAAACTAGCGGGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCA
195 ACCGACG-AA--A---------CGAGCGTGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
20583070 AGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
248 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
20583135 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGCTTCATGGCAAGA
313 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
20583200 CGACTCGTTTTCTATTTTTCATGATTTTTTAAACTTTCTGCGGTTCGGGATTTTTTAAAATTTTT
378 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTATGCGGTTCGGGATTTTTTAAAATTTTT
* * *
20583265 TCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAA
443 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
20583330 AAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
508 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
20583395 CAGACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
573 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
20583460 GTTCTCATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
638 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
20583525 TCATGAGCGCACACCCCCAGCCCCCC-ATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGG
703 TCATGTGCGCACACCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * * * *
20583589 TGATGCTCCGGCGATGGTACCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGTGCCCAGCA
768 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
20583654 TGTGCTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCAGTATG
833 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20583711 CTTAGATTGGGAATGAACTCCGTATGCCTAGGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
20583776 CGAACAGAGGGGCGGGATGCACAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCGGATCC
66 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** *
20583841 TGCTGTCGCAACCCTTAGTCTGGTCTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
20583906 CCGACGAAACGAGCGTACGGGCACTACGCCGGCCAGAGATACGCGATGCGCAAGCCGTGGATCGA
196 CCGACGAAACGAGCGTGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
20583971 TAGGGTGGTAGGTGGGTTTAGGTACATATTTATATTTCTACCTGCCAATGCCATTTTTATGACTT
261 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
*
20584036 GAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
326 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
20584101 ATTTTTCACGATTTTTGAAACTTTATGCGGTTCGGGATTTTTTCAAACTTTTTCGGAA-GATGTT
391 ATTTTTCACGATTTTTAAAACTTTATGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-GTT
* * * *
20584165 TTGGCCCCAAACTTGGTAGACATGATCCTTTTACTTTTGTTGGTATGCACAAAAAAATTCAGCTA
455 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
20584230 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTCAGACAATTTAA
520 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
20584295 CGGCTACTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
585 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
*
20584360 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCAC
650 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * ** * * * *
20584425 ACCCCCCCGGCCCCCCCGATC-ACTGGAACCCTAATGTTGTCGGTCATGTTCTCCAACGATGCTT
715 A--CCCCCAG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
** * *
20584489 CGACGATACTG--CC--C-----------CGGCACCAGCACATGCCCGAGCCTAGCATGTGTTGC
776 CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * ** *
20584539 CACAACCCTCGGTCCGGTTCGATCTTACCCTGGGAATGAACTTCGTATG
841 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20584588 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
20584653 CGACCAGAGAGGCGGGATGCACCAA-CCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATC
66 CGACCAGAGGGGCGGGATGC-GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
** * * * * * *** *
20584717 CTATTACCGTAACCCTTGGTCTGGCCCGATCTTAGACTGGGAATGAACTTTATATGCTTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
20584782 ACCGATGAAACGAGCGGATGGGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGTAAGCC
195 ACCGACGAAACGAGC-G-T--GC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
20584847 GTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
252 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
*
20584912 TTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGAC
317 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * ** * *
20584976 TCGTTTTTTATTTTTCACGATTTTCAAAACCTTATGAGGTTTAGGATTTTTTTAAATTTTTTTGG
382 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTATGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
20585041 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAA
447 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
20585106 TTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAAA
512 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
20585171 CACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTC
577 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
20585236 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCTCACATCAT
642 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
20585301 TTGCGCACAACACCCCCAGCCCCCCCGATCGCCGGAACCTCAATGCCGCCAGTCAGGTTCTCCGG
707 GTGCG--C-ACACCCCCAG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* *
20585366 CGATGCTCCGACGATGGTACCCCGGCGAAGAAAAATGCGGCACCAGCGCATGCCCGAGCCCAGCA
768 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
20585431 TGTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
833 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
20585488 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-
* * * * ** **
20585553 CGGA-CAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCTTCCACGTGCTGTTGATC
65 CCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
20585617 CTGCTACCACAACCCTCAGTCTGGT-TCGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCC
130 CTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
20585681 AACCGACGAAACAAGCGTGCGGGCACTACGGCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATC
194 AACCGACGAAACGAGCGTGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
20585746 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCGTGCCAATGCCATTTTTATGGC
259 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
* * *
20585811 TTGAAAATTCATAC-ATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACAACTCGTTTT
324 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * * *
20585875 TTATTTTTCATGATTTTTGAAACTTTATGTGGTTCGAGATTTTTTAAAACTTTCTCGGAAGGAGT
389 CTATTTTTCACGATTTTTAAAACTTTATGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * * * *
20585940 TTTGGCCCCAAACTTGGTAGACATGATCCTTCTACTTTTGTCGGTATGCACAAAAAAATTGAGCT
454 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
20586005 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTA
519 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
20586070 ACGGCTACT-GCAGCAAACCCGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
584 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
*
20586134 TTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
649 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* **
20586199 CACCCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTC
714 CA-CCCCCAG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
** * ** *
20586263 CGGTGATGGTG--CC--C-----------CGGCACCAGTACATGCCTAAGCCTAGCATGTGCTGC
776 CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
*
20586313 CGCAACCCTCGGT-TCGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
841 CGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20586362 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAGGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
20586427 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGACCGGTCGGGTCCCCCTTTACGTGCTGCAGATCT
66 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
*
20586492 TGCTGCCGCAACCCTTGGTCTGG-CATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCTGGTC-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * *
20586556 ATCGGTGAAACGAGCGGGCGGGCGGGCAGGCAGTACGCTGGCCAGAGAGACAGGATGCACTAGCC
195 ACCGACGAAACGA----GCGTGCGGGCA--C--TACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
20586621 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTTCCAATGCCATTT
252 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
*
20586686 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
317 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
20586751 TCATTTTCTATTTTTCACGATTTTCAAAACTTTATGCAGTTTGGGATTTTTTAAAATTTTTTCGG
382 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTATGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
20586816 AAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGTATGCATAAAAAAA
447 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
20586881 TTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGTGACCATTTCAAAAAAGTGTCCCCATTTCA
512 TTCAGCTAAAAACTCAAAGTGTACAAGA-TTT-TGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20586946 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
575 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** * * * *
20587011 TCTTGAGGTTTGATGCGGGATAGGGGGCCAATATAAGGGCCAAGTGCCTGCACCCATCGCGCATC
640 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
20587076 TTGTGCG--CA----CA-CCCCCCG---GT--------C-A-------GGT----TT-TCCGACG
705 ATGTGCGCACACCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * * *
20587110 ATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGCATG
770 ATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
20587175 TGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCATATG
835 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
20587230 CTTAGACTGGGAATGAACCCCGTATGCCAAAGTCAACTCATGAAACGAGCGTGCGGGCATTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * * * * *
20587295 CGGCTAGAGTGTTGGGATGCGCAAGTCGGGGATCGGTGGGGTCCCCCTCTGCGTGCTTCTGATCT
66 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *** * *
20587360 TGCAGCCGTAACCCTCGGTCCATTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20587425 CTGACGAAATGAGCGGGCTGGCGGGCGGGCACTACGTCGGCCTGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGAGC--G-T-----GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * * *
20587490 TGGATCGATTGGGGGGTAGTTGGGCTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTT
253 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* * *
20587555 CATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
318 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * **
20587620 CGTTTTCTATTTTTCACGATTTTTGAAAGTTTTTGCGGTTTAGGATTTTTTAAAATTTTTTCGGA
383 CGTTTTCTATTTTTCACGATTTTTAAAACTTTATGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * * *
20587685 AGGATTTTTGGTCCCAAACTTGGCATACGTGATCCTTGTATTTTGGTTGGCATGCACAAAAATAT
448 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
20587750 TCAGCTAAACACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
513 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
20587815 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
578 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
20587880 CGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCGTG
643 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
20587945 TGCGCACACTGCCCCAGGCACCCCTGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
708 TGCGCACAC--CCCCA-GC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * * *
20588010 GATGCTCCGACGATGGTGCCCTGGCCAAGAAAAATGTGGGACCAGCACATGCCCAAGCCCAGCAT
769 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* *
20588075 GTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
834 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
20588131 C
1 C
20588132 CTAAGCCAAC
Statistics
Matches: 4656, Mismatches: 540, Indels: 249
0.86 0.10 0.05
Matches are distributed among these distances:
853 23 0.00
854 2 0.00
855 2 0.00
858 3 0.00
864 2 0.00
865 1 0.00
866 160 0.03
867 3 0.00
868 533 0.11
869 1 0.00
870 1 0.00
872 7 0.00
873 2 0.00
874 253 0.05
875 1 0.00
876 1 0.00
877 261 0.06
878 14 0.00
879 2 0.00
880 2 0.00
881 1 0.00
882 106 0.02
883 180 0.04
884 341 0.07
885 220 0.05
886 109 0.02
887 9 0.00
888 477 0.10
889 64 0.01
890 8 0.00
891 123 0.03
892 374 0.08
893 1 0.00
894 1 0.00
896 5 0.00
897 1 0.00
898 1 0.00
899 235 0.05
900 339 0.07
901 277 0.06
902 509 0.11
903 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGTGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTAAAACTTTATGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20584591 original size:26 final size:26
Alignment explanation
Indices: 20584562--20584614 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20584552 CCGGTTCGAT
*
20584562 CTTACCCTGGGAATGAACT-TCGTATG
1 CTTACACTGGGAATGAACTCT-GTATG
*
20584588 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
20584614 C
1 C
20584615 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:20585491 original size:26 final size:26
Alignment explanation
Indices: 20585462--20585514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20585452 CCGGTCTGAT
20585462 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20585488 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20585514 C
1 C
20585515 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20586365 original size:26 final size:26
Alignment explanation
Indices: 20586336--20586388 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20586326 TCGGTCCGAT
* *
20586336 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20586362 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20586388 C
1 C
20586389 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20587255 original size:26 final size:26
Alignment explanation
Indices: 20587204--20587256 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20587194 CTGATCTGAT
**
20587204 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACCCCATATG
*
20587230 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCATATG
20587256 C
1 C
20587257 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:20588857 original size:26 final size:26
Alignment explanation
Indices: 20588821--20588871 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20588811 CTAGTCTGAT
*
20588821 CTTAGATTGGGAACAAACTCCGTATG
1 CTTAGAATGGGAACAAACTCCGTATG
**
20588847 CTTAGAATGGGAATGAACTCCGTAT
1 CTTAGAATGGGAACAAACTCCGTAT
20588872 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGAATGGGAACAAACTCCGTATG
Found at i:20590440 original size:26 final size:26
Alignment explanation
Indices: 20590400--20590452 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20590390 CCAGTCCAAT
*
20590400 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20590426 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20590452 C
1 C
20590453 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20591302 original size:26 final size:26
Alignment explanation
Indices: 20591250--20591302 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20591240 CCGGTCTGAT
***
20591250 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCAAATG
*
20591276 CTTAGATTGGGAATGAACTCCAAATG
1 CTTAGACTGGGAATGAACTCCAAATG
20591302 C
1 C
20591303 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCAAATG
Found at i:20592182 original size:26 final size:26
Alignment explanation
Indices: 20592153--20592202 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20592143 GTCCGATCTC
20592153 AGACTGGGAATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
*
20592179 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCATATGC
20592203 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:20593023 original size:26 final size:26
Alignment explanation
Indices: 20592994--20593046 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20592984 CCGGTCTGAT
20592994 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
20593020 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
20593046 C
1 C
20593047 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:20593928 original size:26 final size:26
Alignment explanation
Indices: 20593899--20593951 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20593889 CCGGTCGGAT
20593899 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
20593925 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
20593951 C
1 C
20593952 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:20595706 original size:26 final size:26
Alignment explanation
Indices: 20595677--20595728 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20595667 CTAGTCTGAT
*
20595677 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
20595703 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
20595729 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:20596596 original size:26 final size:26
Alignment explanation
Indices: 20596567--20596619 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20596557 CCAATCCGAT
20596567 CTTAGACT-GGTAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
20596593 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20596619 C
1 C
20596620 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20597505 original size:26 final size:25
Alignment explanation
Indices: 20597469--20597520 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20597459 CCAGTCCAAT
20597469 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTC-GTATG
*
20597495 CTTAGAGTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
20597520 C
1 C
20597521 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:20597890 original size:900 final size:903
Alignment explanation
Indices: 20592568--20598394 Score: 7701
Period size: 890 Copynumber: 6.5 Consensus size: 903
20592558 AGACGGCTCG
*
20592568 TTTACGGTTC-AGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACC
1 TTTACGGTTCGA-GATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
20592631 TGATCCTTGTATTTTTGTTGG--T--AC------A---A-CTAAAAACTTGAAGTGTACAAGATT
64 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
20592682 TTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCGGCAAACCTGT
129 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
20592747 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTTGAGGTTTGATGAGGGATAGGAGGCCAAT
194 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
20592812 ATAAGGGCCAAGTACCATCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCGTCCCGATCT
259 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACC-CCCCGATCG
* * *
20592876 CCGAAACCCCAATGCCGCTGGTTAGGTTCT-C--C---G----G-CGATGGTGCCCTGACGAAGA
323 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC-GACGAAGA
* * * * * *
20592930 AAAATGCGGCACCAGCACATG-CTGAGCCCAGCATGTGCT-GTCGCAACCCTCGATCCGGTCTGA
387 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTCGCAACCCTTGGTCCAGTCCGA
* *
20592993 TCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACC
452 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
20593058 CACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTC
517 CACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTC
* ** * * *
20593123 GGGTCCCCCTCTGCATGCTACCGATCCTGCTGTGGCAACCCTCGGTCTGGTCCAATCTTAGACTG
582 GGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTG
* * * * * *
20593188 GTAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGTGGGCGGGTGGGCGGGCAGGCACTA
647 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTA
* * * *
20593253 C-ACTGGCCAGGGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
712 CGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * * *
20593317 ATCTTCATATTTCTACGTGCCAATGCCATTTTTGTGACTTGTAAATTGATACAATGGTCCCGTAA
776 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
20593382 GCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTT
841 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* *
20593445 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGACCCCAAACTTGGTAGACGTG
1 TTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
20593510 ATCCCTGTGTTTTTGTTGGCATGCACAAAAACATTCAGCAAAAAACTCGAAGTGTACAAGATTTT
66 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
20593575 GTGACCATTGGAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAA
131 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
** * * *
20593640 AATCTCAAATG--CTTTAAGCAGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGAGGGCCACTAT
196 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
20593703 AAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCGCCCCCCCGG-CCCCCTCGAT
261 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CCCCCCGGACCCCC-CGAT
* ** *
20593767 CACCGGAACCCCAATGCCGTAGGTCAGGTTCTCCGACGATGCTCCGGA-GATGGTGCCCCGATGA
321 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GACGATGGTG-CCCGACGA
* * *
20593831 ATAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACT-GCAACCCTTGATCCGGTC
384 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTCGCAACCCTTGGTCCAGTC
* *
20593895 GGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
449 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *** * * * * **
20593960 ACACACGAAACGAATGTATAGGCGCTTAGCCGGCAAGAGGGGCGGGATGCACAAACCGGGGATCG
514 ACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCG
* * * ** * * *
20594025 GTCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTATCACAACGCTC-AGTCCGGTCCAATCTTAG
579 GTCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAG
* * * * * * * *
20594089 ACTAGGAATGAACTCCATATGCCTAAGCTAGCCAACGAAATGAGTGGCCGGGCGGGT----GGGC
643 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGC
* * *
20594150 AATACGTCGGCTAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGG
708 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * ** *
20594215 GACATCTTTATATTTCTGCATGCCAATGATATTTTTATGGCTTTTAAATTCATACAATGGTCCCT
773 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
20594280 TAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACT
838 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC-
20594345 TT
902 TT
* * * *
20594347 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAATGG-GTTTTGG-CCAAAACTTGGTAGATGT
1 TTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
20594410 CATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
65 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
20594475 TGTGACCATTTGTAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTA
130 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
20594540 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATA
195 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
20594605 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCC
260 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCC
* *
20594670 GGAACCCCAATACCG-C--T-A-GTT-T--G--G-TTCTCCGACGATGGTGCCCTGACGAAGAAA
325 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC-GACGAAGAAA
* * ** *
20594724 AATGCGGCATCAG-ATCATACCCGAGCCCAGCATACGCTGCT-GCAACCCTTGGTCCAGTCCGAT
389 AATGCGGCACCAGCA-CATGCCCGAGCCCAGCATGTGCTACTCGCAACCCTTGGTCCAGTCCGAT
* *
20594787 CTTAGACTGGGAATGAACTCCGTTTGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCC
453 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * **
20594852 ATGAAATGAGTGTGCGCGCGCTCAGTCGGCCAGAGGGGTGGGATGCACAAG-TCGAGGATCGACC
518 ACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAG-GGATCGGTC
* * * * * *
20594916 GGGTCCCCCTCTGCATCCTGCCAATCTTGCTGCCGTAACCCTC-AGTCTGGTTCGATCTTAGACT
582 GGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACT
* *
20594980 GGGAATTAACTCCGTATGCCTAAGCCAACCGACG--A--A-C---CGAGC----GGGCGGGCACT
646 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACT
* * * * * *
20595033 GCGTCGGCCAAAGAGACAGGATGCGCAAGCCGTGGATCAATA-AGTGGTAGGTGGGTTTAGACAC
711 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
20595097 ATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
776 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
20595162 GCCTTCACGTGAAGTTTCACGGTAAGACGACTCGTTTTCTATTTTTTACAATTTTCAAAACTT
841 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* * * *
20595225 TTTGCGGTTCGGGATTTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
1 TTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
20595290 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
65 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * *
20595355 TCTGACCATTTGAAAAAA-TGTCCCCATTTCAGACACTTTCATGGCTAGTGACAGCAAACCTGTA
130 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
20595419 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
195 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
20595484 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGCT
260 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCC
* * ** *
20595549 GGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCAACGAAGAAA
325 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGAAGAAA
* * * * *
20595614 AATGCGGCACCAGCAAATGCCCGAGCCTAGCATGTGCTACT-GCAACCCTCGGTCTAGTCTGATC
389 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTCGCAACCCTTGGTCCAGTCCGATC
* ** *
20595678 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTATATGACTAAGTCAACCCA
454 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * **
20595743 CAAAATGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATACGCAAG-TCGAGGATCGACCG
519 CGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAG-GGATCGGTCG
* * * * * ** * ** * *
20595807 AGTCCCCCTCTACATCCGGCCGATCTTGCTGCCATAACCCTCGTTTTGGTCTGATCTTAGATTGG
583 GGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGG
* * * * *
20595872 GAATGAACTTCGTATGCCTAATCCGACCGAC-AAA--A-----CGAGC----GGGCGGGCATTAC
648 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTAC
*
20595925 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTGGGTGGGTTTAGGCACAT
713 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
20595989 CTTCATATTTCTACCTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
778 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * * * **
20596054 CTTCATGTGATGTTTCATGGCAAGACGACTTGTTTCCTTTTTTTCATGATTTTTGAAACTT
843 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
** * * * *
20596115 TTTGTGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAACCTTGCTAGACGA
1 TTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* ** *
20596179 GATCCTTGTATTTTTTTTCACATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTT
65 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
20596244 TGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
130 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
20596309 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATA
195 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
20596374 TAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCTCGGCCCCCCCGTTCGTC
260 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCC
* * * *
20596439 GAAACCCCACTGCCGCCGGTCAGGTTCTCCGACGATGCACCGACGATGGTGCCCCGATGAAGAAA
325 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGAAGAAA
* * * * * ** *
20596504 AATGTGACACCAGAACATGCTCGAGCCCAGCATGTGCT-GTCGCAACCCTCAGTCCAATCCGATC
389 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTCGCAACCCTTGGTCCAGTCCGATC
* * *
20596568 TTAGACTGGTAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAATCAACCCA
454 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
** * ** *
20596633 CGAAGTGAGCGTGCAAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGG
519 CGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGG
* * * * *
20596698 GTCCCCTTCTGCATACTACCGATCCTGCTGCCGCAACCCTCAATCCAGTCCGATCTTAGACTGGG
584 GTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
* * * * *
20596763 AATGAACTCTGTATGCCTAAGCCAACTGACGAGACGAGCGGGCGGGCGAGTGGTCGGGCACTACG
649 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACG
* * * **
20596828 TCAGCCAGAGAAACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTACGTTTAGGCACATC
714 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
20596893 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCC
779 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
**
20596958 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
844 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* *
20597018 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACCTG
1 TTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
20597083 ATCCTTTTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
66 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
20597148 ATGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAAGGCTACTGGCAGCAAACTTGTAA
131 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
20597213 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATAT
196 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
20597277 AAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCTGACCCCCCAATCACCG
261 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCCG
* * * * * **
20597342 GAACCCCAATGCCGCTGGTCAGGTTCTCCGATGATGCTCCGACGATCGTGCCTCGGCAAAGGGAA
326 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC-CGACGAAGAAAA
* * * *
20597407 ATGTGGCCCCAGCACATGCCCGAGCCCAGCATGTGCT-CTCGTAACCCTTGGTCCAGTCCAATCT
390 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTCGCAACCCTTGGTCCAGTCCGATCT
* *
20597471 TAGACTGGGAATGAACTCTGTATGCTTAGAGTGGGAATGAACT-CGTATGCCTAAGTCAACCCAC
455 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
20597535 GAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-CAAGCTAGGGATCAGG-CGG
520 GAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATC-GGTCGG
* *
20597598 GTCCCCCTCTGCTTGCTGCCGATCCTGCTGCCGCAACCCTCGACCCGGTCCGATCTTAGACTGGG
584 GTCCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
*
20597663 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACA
649 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACG
* *
20597728 CCGGCCAGAGAGACGGGATGCGGAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
714 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
**
20597793 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
779 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * * ** *
20597858 TTCACCTCAAGTTTCATGGCAGGACAACTCGTTTTCTATTTTTCATGATTTTTGAACCTT
844 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* *
20597918 TTTACGGTTCGAGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTG
1 TTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
20597983 ATCCTTGTATTTTTGTTGGCATGCA-AAAAAATATTCAGCTAATAACTCGAAGCGTACAAGATTT
66 ATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* **
20598047 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATCGCTACTTACAGCAAACCTGTA
130 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
20598112 AAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAATA
195 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
20598177 TAAGGGCCAAGTACCAGTACCCATTGCACATGATGTGCGCACACCCCCCGG--CCCCCAATCGTC
260 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCC
* * *
20598240 GGAACCCCAATGCCTCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCACCGACGAAGAAA
325 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC-CCGACGAAGAAA
* * *
20598305 AATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTAC-CACAACCCTTGGTCCAGTCCGATC
389 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTCGCAACCCTTGGTCCAGTCCGATC
20598369 TTAGACTGGGAATGAACTCCGTATGC
454 TTAGACTGGGAATGAACTCCGTATGC
20598395 CTAAGCCAAC
Statistics
Matches: 4358, Mismatches: 498, Indels: 166
0.87 0.10 0.03
Matches are distributed among these distances:
877 76 0.02
878 20 0.00
879 340 0.08
880 143 0.03
881 2 0.00
882 1 0.00
883 1 0.00
884 4 0.00
885 1 0.00
886 1 0.00
887 9 0.00
888 260 0.06
889 212 0.05
890 926 0.21
891 105 0.02
892 2 0.00
893 43 0.01
894 4 0.00
895 1 0.00
896 2 0.00
898 4 0.00
899 181 0.04
900 537 0.12
901 442 0.10
902 299 0.07
903 457 0.10
904 36 0.01
905 248 0.06
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (903 bp):
TTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCCG
GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTCGCAACCCTTGGTCCAGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGGGT
CCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGTC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
Done.