Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 119 of 195
Found at i:20599107 original size:26 final size:26
Alignment explanation
Indices: 20599071--20599123 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20599061 CCTGTCCGAT
20599071 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
20599097 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20599123 C
1 C
20599124 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20599968 original size:26 final size:26
Alignment explanation
Indices: 20599939--20599991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20599929 CCTGTCTGAT
20599939 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
* *
20599965 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
20599991 C
1 C
20599992 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:20600866 original size:26 final size:26
Alignment explanation
Indices: 20600837--20600889 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20600827 CCGATTCGAT
*
20600837 CTTAGACTGGGCATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20600863 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20600889 C
1 C
20600890 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20602665 original size:26 final size:26
Alignment explanation
Indices: 20602636--20602688 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20602626 CCAGTCTGAT
20602636 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
20602662 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20602688 C
1 C
20602689 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20603550 original size:26 final size:26
Alignment explanation
Indices: 20603521--20603573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20603511 CCAGTCCGAT
20603521 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20603547 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20603573 C
1 C
20603574 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20604443 original size:26 final size:26
Alignment explanation
Indices: 20604414--20604464 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20604404 TGGTCCGATC
20604414 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
20604440 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
20604465 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:20604936 original size:900 final size:896
Alignment explanation
Indices: 20599892--20610029 Score: 12424
Period size: 900 Copynumber: 11.3 Consensus size: 896
20599882 TGCCACGATG
* * * * *
20599892 ATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGATCCT-GTCTGATCTTAGACTGAGAATGAA
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAA
* * * * * **
20599956 CTCTGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATAAGCGTACGG
65 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGG
* ** * * * * *
20600021 GCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCATGGATCGGTCGAGTCCCCCTTTGCATGC
130 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTACGTGC
* * * * * * * *
20600086 TACCGATCTTGCCGTCGTAACCCTCATTCCGGTCCGATCTTAGATTAGGAATGAACTCCGTATGC
194 TGCCGATCCTGCTGCCGCAACCCTCA-T-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
20600151 CTAAGCCAACTGACGAAA-GAA-GAGGCCGGGCGGGC-GAGCACAACACTGACCAGAGAGACGGG
257 CTAAGCCAACCGACGAAACGAACG-GG-CGGGCGGGCAG-GCACTACGCCGGCCAGAGAGACGGG
* * *
20600213 ATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCACGTCTTCATATTTCTGCATG-
319 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * * *
20600277 AATATGGCATTTTTATGGCATGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
384 CA-ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
20600342 TAGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTGT
448 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT-T
* *
20600407 -AAATTTTTTCAGAAGGACTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
512 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
20600471 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTG
577 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
20600536 TCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-
642 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
20600600 GGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACC
707 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
20600665 CATCGCACATCATGTGCGCACA-CCCCCCGGCCCCTCCGATCGTCAGAACCCCAATGTCGCCGGT
772 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * * * ** * *
20600729 CCGGTTCTCCGACGATGCACCGGTGATGGTGCCCCGGTGAAGAAAAATGTGGC-CGTAGCAC
837 CAGGTTCTTCGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCAC-CAGCAC
** * * * * * * *
20600790 ATGTTCGAGCCCAGCATGTGCTACCACAACCCTCGATCCGATTCGATCTTAGACTGGGCATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* *
20600855 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTACAGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
** * * * * * * **
20600920 CGCTCATTCAGCCAGAAGGGCAGTATGCGCAAGCCGAGGATCGACCGGGTCCCCC-AAAGCGTGC
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTA-CGTGC
* * * * * * *
20600984 TGTCGATCTTGCTGCTGTAACCCTCAGTCCGATCCT-ATCTTAGATTGGGAATGAACTCCATATG
194 TGCCGATCCTGCTGCCGCAACCCTCA-T-CGGT-CTGATCTTAGACTGGGAATGAACTCCGTATG
* *
20601048 CCTAAGCCAACCGACGAAACAAGCGGACGGGGGGGGGGCGGGCAGGCACTACGCCGGCCAGAGAG
256 CCTAAGCCAACCGACG--A-AA-CGAAC---GGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAG
* ** ** *
20601113 ATGGGATGCGCAAGCCGTTTATCGATAGGGTTATAGGTGGGTTTAGGCACATCTTCATATTTTTG
314 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
** *
20601178 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAAGT
379 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * *
20601243 TTCATGGCAAGACGGCTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGATTCAGGATTT
444 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTT
** * * * *
20601308 TTTAAAATTTTTTTGGAAGGAATTTTGGTCCCAAACTTGGTAAACGTGATCCTTGTATTTTTTTT
509 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
20601373 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAA
574 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
20601438 GTGTCCCCATTTCAGACCCTTTTATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
639 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * **
20601503 AAGGGGGTGTGAGTTCTTGATGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATGAGC
704 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * *
20601568 ACCGATGGCACATCATGTGCGCACACCCACCCCCCTGGCCCCCCCGATCGTCGAAACCCAAATGC
769 ACCCATCGCACATCATGTGCGCACA--C-CCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGC
* * ** *
20601633 CGTCGGTTA-GTTC-T---C--TG----GCGATGATGCCCCGGTGAAGAAAAATACGGCACCAGC
830 CGTCGGTCAGGTTCTTCGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
20601687 AC
895 AC
* * * * *
20601689 ATGCCCGAGCCCAGCATGTGCTGTCGCAACCTTCAGT-TCAGTCCGATCTTAGCCTGGGAATGAA
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAA
** * * *
20601753 CTCTATATGCTTAAACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAATGAGCGTACGG
65 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGG
** * ** *
20601818 GCGCTCAATCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTGCGTGC
130 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTACGTGC
** * ** * * * *
20601883 TGTTGATCCTACTATCACAACCCTCAGTCCTGTCTGATCTTAGACTTGGAGTGAACTCCGTATGC
194 TGCCGATCCTGCTGCCGCAACCCTCA-T-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
** * * * * *
20601948 CTAAGCCAACCGACGAAAC-AAGCAAGCGGGGCGGACGGGCACTACACCGGCCAAAGAGATGGGA
257 CTAAGCCAACCGACGAAACGAA-CGGGC-GGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGA
* * *
20602012 TGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTTGCC
320 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * * *
20602077 AATGCCAATTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTCCACATGAAGTTTCATG
385 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* ** * *
20602142 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACGTTTTGGGGTTCAGGATTTTTTTAA
450 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
** *
20602207 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATTCTTGTATTTTTGTTGGCATG
515 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
20602272 CACAAAAAAATTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCC
580 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
20602337 CCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
645 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
20602402 GTGTGTGTTCTTGAGGTTTGATGACGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCAT
710 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
20602467 CGTACATCATGTGCGCACA-CCCCTCGGCCCCCCCGATTGCTGAAACCCCGATGCCGTCGGTCAG
775 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * *
20602531 GTT-TTCTAGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGACACCAGCAC
840 GTTCTTCGA-CGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * ** * *
20602589 ATGCCTGAGCCCAGCATGTGTTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* * * * * *
20602654 TCCATATGCTTATACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCGTGCGTG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
* * * *
20602719 CGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCAGGTCCCCCTCTGA-GTGC
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCT-ACGTGC
* * * *
20602783 TGCCGATCTTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
194 TGCCGATCCTGCTGCCGCAACCCTCA-TC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* *
20602848 CT-----AA--G-TG----G-ACGGGCGGGC--G--GGCACTACGCAGGCCAGAGAGACGGGATG
257 CTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATG
* * **
20602896 CACAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAA
322 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
20602961 TGCCATTTTTATGGCTTGTAAATTCATAAAAAAAGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
387 TGCCATTTTTATGGCTTGTAAATTCAT--ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** * **
20603026 ACAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTTGCGGTT-AAGATTTTTTAAA
450 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * *
20603090 ATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGATAGACATGATCCTTGTATTTTTTTTGGCAT
515 ATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
20603154 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
579 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
20603219 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
644 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
** * **
20603284 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCAGGCCAATATAAGGGCCAAGTACCCGCACTTA
709 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
20603349 TCGCACATCATGTGCGCACACCCCTCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
774 TCGCACATCATGTGCGCACA-CCC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * *
20603414 CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGG-ACCAGCAC
837 CAGGTTCTTCGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * **
20603474 ATGCCCAAGCCAAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
*
20603539 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC--A----
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
* ** * * *
20603598 ---T------G-TAGATTGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCATCTATGTGCT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTACGTGCT
* *
20603653 GCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
195 GCCGATCCTGCTGCCGCAACCCTC-AT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
20603718 TAAGCCAACCGATGAAATGAGCTGGCGTGAGGGCGGGCAGCCGGGCACTACGCCGGCCAGAGAGA
258 TAAGCCAACCGACGAAACGAAC--G-G-GCGGGCGGGCA----GGCACTACGCCGGCCAGAGAGA
* * ** * *
20603783 CAGGATGCGCCAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAAATTCGTATTTCTAC
315 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
20603848 ATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
380 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
20603913 TCATGGCAAGACGAGTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTT
445 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* * *
20603978 TTAAAATTCTTTT-GGAAGGAGTTTTGGTCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
510 TTAAAATT-TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
20604042 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAA
574 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
20604107 GTGTCCCCATTTCAAACACTTTAAGGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTT
639 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
20604172 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGC
704 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
20604237 ACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCC
769 ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTC
* * * * * *
20604302 GGTTAGGTTCTTCGATGATTCTCAAGCGATGGTGTCCCGAGGAAGAAAAATGCGGCACCAGCAC
834 GGTCAGGTTCTTCGACGATGCTC-CGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * **
20604366 TTGCCCGAGCCCAGCATGTGTTGCAACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* * *
20604431 TCCGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
* * * * * ** * *
20604496 TGCTCAACCAGCCAGATGGGCGGGATGCGCAAGTCAGGGATCGATCGAGTCCCCTTCTACGTGCT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTACGTGCT
* * * * * * *
20604561 GTCAATCCTACTGTCACAACCCTCGATCGGATCTGATCTTAGACTGCGAATGAACTCCATATGCC
195 GCCGATCCTGCTGCCGCAACCCTC-ATCGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
20604626 TAAGCCTATCGACGAAACGAACGGGCGGGCGGGCAAGCACTATGCCGACCAGAGAGACGGGATGC
258 TAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGC
** * * *
20604691 ATAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
323 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
20604756 GCCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCA
388 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
20604821 AGACGACTCGTTTT-TGATTTTTCACGATTTTTGAAACTTTTTAAGGTTTGGGATTTCTTAAAAT
453 AGACGACTCGTTTTCT-ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * ** * * *
20604885 TTTTTCAGAAGGATTTTTTGCCATAAACTTGGTAGACTTAATGCTTGTATTTTT-TTGGCATGCA
517 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
20604949 CAAAAAAATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
582 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
20605014 ATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGT
647 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * * *
20605079 GTGAGTTCTCAAGGTTAGATGAGGGATAGTGGGCCAATATAAGGGTCAAGTACCAGCTCCCATCG
712 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
20605144 CACATCATGTGCGCACATCCCCCCGG-CCCCCCGATCGTCGGAGCCTCAGTGCCGTCGGTCAGGT
777 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* * *
20605208 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAATTACGGCACCAGCAC
842 TCTTCGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * ** *
20605264 ATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGAACTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* * * * * * *
20605329 TTCGTATGCTTAGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
* * * * *
20605394 CACTCAGCCGGTCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCTATGTGCT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTACGTGCT
* * * ** * * *
20605459 GCTGATCCTGCTACCGCAACCCTCGATCCAGTCCAATCTTAGACTAGGATTGAACTCTGTATGCC
195 GCCGATCCTGCTGCCGCAACCCTC-AT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* *
20605524 TAAGCCAACCGACGAAAC-AAGCGGGCGGGCAGGCTGGCGGGCGGCACTACGACGGCCAGAGAGA
258 TAAGCCAACCGACGAAACGAA-CGGGCGGGC--G--GGC---AGGCACTACGCCGGCCAGAGAGA
*
20605588 CAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
315 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
20605653 ATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
380 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * *
20605718 TCATGGCAAGACGACTCGCTTTCTATTTTTCACGATTTTTGAAACGTCTTACGATTTGGGATTTT
445 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* **
20605783 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCAATGTATTTTTGTTG
510 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
20605848 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAG
575 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
20605913 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
640 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
20605978 AGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
705 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
20606043 CCCATCACACATCATGTGCGCACACCCTCCCGGCCCCCCCGATCGTCGAAACCTCAATGCCGTCG
770 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCG
**
20606108 GTCAGGTTC-TC--CGA-------CGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCAC
835 GTCAGGTTCTTCGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* *
20606160 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGCAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* ** * * * * *
20606225 TTCGTATGCTTAGACAAGGAATGAACTTCGTATGCCTAAGTTAACCAACGAAACAAGCGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
* ** * *
20606290 CGCTGAGCCGGCCAGAGGGGCATGATGCGCAAGCTGGGGATCGGCCGAGTCCCCCTCTGCGTGCT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGCCGGGTCCCCCTCTACGTGCT
* * * * *
20606355 GCCGATCCTGCTACCGCAACCCTCTGGTCCAGTCCGATCTTAGACTGAGAATGAACTCCGTATGC
195 GCCGATCCTGCTGCCGCAACCCTC--AT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* *
20606420 CTAAGCCAA-C--CG----G--CGGGCAGGCGGGCAGGCACTACGCCGGCTAGAGAGACGAGGAT
257 CTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACG-GGAT
20606476 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
321 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
20606541 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGG
386 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
20606606 CAAGACGATTCATTTT-TCATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAA
451 CAAGACGACTCGTTTTCT-ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * * * * *
20606670 ATTTTTTCAGAAGTAGTTTTGGCCTCAAACCTGGTAAACGTGATCATTTTATTTTT-TTGGTATG
515 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
20606734 CACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAATGTGTCC
580 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
20606799 CCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGG
645 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
20606864 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCTT
710 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
20606929 CACACATCATGTGTGCACA-CCCCCCGGCCCACCCGATCGCTGGAACCCCAATGCCG-CTAGTCA
775 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCA
* * * *
20606992 AGTTC-TCTGATGATGCTCCGGCGATGGTGCCCCTG-TGATGAAAAATGCGGCACCAGCAC
839 GGTTCTTC-GACGATGCTCC-GCGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCAC
* * *
20607051 ATGCTCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGGCTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* * * *
20607116 TCCGTATGCTTAGACTAGGAATGAACTCCGTATGCTTAAGTCAATCCACGAAACGAGCGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
* * * * *
20607181 CGCTCAGCCGGCCAGATGGGCGGGATGCGCAAGTCGGGGATCAGCTGGGT-CCCCTCTGCATGCT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTACGTGCT
* ** * * * * *
20607245 GCCGATCCTACTATCGTAAACCTCAGTTCGGTCTGATCTTAGACTGGGAATCAACTCTGTATCCC
195 GCCGATCCTGCTGCCGCAACCCTCA--TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * ** *
20607310 TTAGCCAACCGACGAAAC-AAGCGGGTGGGCGGACGGGTGGGCACTACGCCGGCCAGAGAGATGG
258 TAAGCCAACCGACGAAACGAA-C----GGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGG
*
20607374 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCATG
318 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
20607439 CCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCA
383 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
20607504 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTGCGGTTCGGGATTTTTTA
448 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
* * * * * *
20607569 AAATTTTTTCGGAAGGAGTTTTGGCCTCAGACCTGGTAGGCATGATCCTTGTATTTTTGTTGGCA
513 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
20607634 TGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
578 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
20607699 CCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
643 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * ** *
20607764 GGCTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCTGATATAAGAGCCAAGTACCAGCACCC
708 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * ** *
20607829 ATTGCACATCATGTGCGCACA-CCCCCCAGCCCCTCCGATCATCGGAACCCCAATACCGTCGGTC
773 ATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
* * * *
20607893 AGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGATGAAGAGAAATGCGGCACCAGCAC
838 AGGTTCTTCGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * *
20607953 ATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTTGACTGGGAAAGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* *
20608018 TTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
* * * *
20608083 CGCTCAGCCGGGCAGAGGGGCGGGATGCTCAAGCCGAGGATCGGCCGGGTCCCGCTCTACGTGCT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTACGTGCT
* * * *
20608148 GTCGATCTTGCTGCCACAACACTCAATCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
195 GCCGATCCTGCTGCCGCAACCCTC-ATC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
20608213 TAAGCCAACGGAC--AA--AACGAGCGGGCGGG-A---ACTACTCCGGCCAGAGAGACGAGATGC
258 TAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
20608270 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAAT
323 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
20608335 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCA
388 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
20608400 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTCTTACGGTTTGGGATTTTTTAAAATT
453 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * * * * *
20608465 TTTTCAGAAGGAGTTTTAGCCCCAAACTTTGTGGACATTATCCCTGTATTTTTGTTGGCATGTAC
518 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
20608530 -AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCA
583 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
20608594 TTTAAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTG
648 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
20608659 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
713 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
20608724 ACATCATGTGCGCACACCCACCCAGTCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTT
778 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * *
20608789 C-TC--CGA---T----GATGGTGCCCCGACGAAGAAAAATGTGACACCAGCGC
843 CTTCGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * * * * *
20608833 ATGCCCGTGCCCAGTATGTACTACCACAACCCTCGATCTGATCCGATCTTTGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* * * ** * *
20608898 TCCATATACTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
* * * * *
20608963 CGCTCAGTCGGCCAGAGGGCCAGGATGTGCAAGCTGGGGATCGGCCGGGTCCCCCTCTACGTGTT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGCCGGGTCCCCCTCTACGTGCT
* * * *
20609028 ACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGCATGCC
195 GCCGATCCTGCTGCCGCAACCCTCA-TC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
20609093 TAAGCCAATCGATGAAACGAGCAAGCGGGCGGGTGGACGGGTGGACGGGCAGGC-ACTGCATCGG
258 TAAGCCAACCGACGAAAC--G-AA-CGGGC--G-GG-C--G-GG-CAGGCA--CTAC-GC--CGG
* * *
20609157 CCAGAGAGACGAGATGTGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
306 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
20609222 TATTTTTGCATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
371 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * * * * ***
20609287 CGTGAAGTTTCCTTGCAAGACGAATCATTTTCTA----TCAC-AATTTTCAAAATTTTTTTTGTT
436 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* *
20609347 CGGGATTTTTTAAAATTTTTTCAGAAGGCGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTA
501 CGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
20609412 TTTTTGTTGG-AGTGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
566 TTTTTGTTGGCA-TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
20609476 TTAAAAAAAGTGTCCACATTTAAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAA
630 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * * *
20609541 ATTCTCTCTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAAAATAAGGGCCA
695 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * **
20609606 AGTACCAGCACCCATCGCACATCACGTGTGCACACCCCCCTCGG-CCCCCCGATCCCCATAACCC
760 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCCGATCGCCGGAACCC
* * *
20609670 CAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG-CCCTAGCGAAGAAAAATGCG
824 CAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCG-CGATGGTGCCCCGA-CGAAGAAAAATGCG
20609734 GCACCAGCAC
887 GCACCAGCAC
** *
20609744 ATGCCCGAGCCCAATATGTGCTTGCCGCATCCCTCGGTCCGGTCTGTTCTTAGACTGGGAATGAA
1 ATGCCCGAGCCCAGCATGTGC-TGCCGCA-ACC-C--T-C-G---G----T---CT--G---G--
* *
20609809 CTCCGTATGCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTTCGTATGCCTA
42 -TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
20609874 AGTCAACCCACGAAACGAGCCTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGGCGAG
104 AGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA-GCGGG
* * * * ** * **
20609939 GATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTGTGGTCCAATC
168 GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCC-TCAT-CGGTCTGATC
*
20610004 TTAGACTGGGAATGAACTCCATATGC
231 TTAGACTGGGAATGAACTCCGTATGC
20610030 TTAGACTAGG
Statistics
Matches: 8039, Mismatches: 967, Indels: 428
0.85 0.10 0.05
Matches are distributed among these distances:
868 1 0.00
869 99 0.01
870 2 0.00
874 2 0.00
876 2 0.00
877 2 0.00
879 3 0.00
880 307 0.04
881 233 0.03
882 348 0.04
883 271 0.03
884 81 0.01
885 124 0.02
886 84 0.01
887 8 0.00
888 49 0.01
889 47 0.01
890 234 0.03
891 577 0.07
892 207 0.03
893 734 0.09
894 119 0.01
895 18 0.00
896 229 0.03
897 48 0.01
898 541 0.07
899 567 0.07
900 741 0.09
901 247 0.03
902 484 0.06
903 77 0.01
904 173 0.02
905 623 0.08
906 308 0.04
907 42 0.01
908 115 0.01
910 14 0.00
911 76 0.01
912 5 0.00
913 2 0.00
914 1 0.00
916 1 0.00
917 1 0.00
918 1 0.00
925 1 0.00
928 2 0.00
930 1 0.00
936 4 0.00
937 2 0.00
938 178 0.02
939 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCGGGGATCGGCCGGGTCCCCCTCTACGTGCTG
CCGATCCTGCTGCCGCAACCCTCATCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGAACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTT
CGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
Found at i:20605350 original size:26 final size:26
Alignment explanation
Indices: 20605311--20605363 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20605301 CCAGTCCGAA
*
20605311 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
20605337 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
20605363 C
1 C
20605364 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:20607127 original size:26 final size:26
Alignment explanation
Indices: 20607098--20607153 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20607088 CTGGTCCGAT
* *
20607098 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20607124 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20607150 CTTA
1 CTTA
20607154 AGTCAATCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20609821 original size:26 final size:26
Alignment explanation
Indices: 20609792--20609870 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
20609782 CCGGTCTGTT
20609792 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20609818 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20609844 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20609870 C
1 C
20609871 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20610032 original size:26 final size:26
Alignment explanation
Indices: 20610003--20610055 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20609993 GTGGTCCAAT
*
20610003 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
20610029 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
20610055 C
1 C
20610056 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20610137 original size:185 final size:185
Alignment explanation
Indices: 20609818--20610214 Score: 587
Period size: 185 Copynumber: 2.1 Consensus size: 185
20609808 ACTCCGTATG
* * * * *
20609818 CTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCATATGCCTAAATCAACCC
* * * *
20609883 ACGAAACGAGCCTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGGCGAGGATCGGTCG
66 ACGAAACGAGCCTACGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGCCG
* ** **
20609948 GGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTGTGGTCCAAT
131 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCCAAT
20610003 CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCATATGCCTAAATCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCATATGCCTAAATCAACCC
* * **
20610068 ACGAAACGAGCGTACGGGCGCTCATCCGGCCAGAGGGGCGAGATGCGTAAGCCGAGGATCGGCCG
66 ACGAAACGAGCCTACGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGCCG
* ***
20610133 GGTCCCCCTCTGCGTGCTGCCGATCCTGTTGGTGCAACCCTCAGTCCGGTCCAAT
131 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCCAAT
*
20610188 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCATATGC
20610215 CTAAGCTAAC
Statistics
Matches: 189, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
185 189 1.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCATATGCCTAAATCAACCC
ACGAAACGAGCCTACGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGCCG
GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCCAAT
Found at i:20610935 original size:26 final size:26
Alignment explanation
Indices: 20610906--20610961 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
20610896 TCGGTCCGAT
**
20610906 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCAAATG
*
20610932 CTTAGACTGGGAATGAACTCCAAATG
1 CTTAGACTAGGAATGAACTCCAAATG
20610958 CTTA
1 CTTA
20610962 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCAAATG
Found at i:20611851 original size:26 final size:26
Alignment explanation
Indices: 20611799--20611851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20611789 CCGGTCCGAT
*
20611799 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
20611825 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
20611851 C
1 C
20611852 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:20614658 original size:26 final size:26
Alignment explanation
Indices: 20614619--20614671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20614609 CCCGTCCTAA
*
20614619 CTTAGACTGAGAATGAACTACGTATG
1 CTTAGACTGAGAATCAACTACGTATG
* *
20614645 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGAGAATCAACTACGTATG
20614671 C
1 C
20614672 AGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTACGTATG
Found at i:20615557 original size:26 final size:26
Alignment explanation
Indices: 20615521--20615572 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20615511 CCCATCCTAA
20615521 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
20615547 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
20615573 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:20615627 original size:902 final size:898
Alignment explanation
Indices: 20613874--20616364 Score: 3747
Period size: 902 Copynumber: 2.8 Consensus size: 898
20613864 GCCCAGCACG
* * * *
20613874 TGCTGTCGCAACCCTC-AGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
1 TGCTGTCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
20613938 ACCCACAAAACGAGCGTGCGGAT-GGGCGGGCAGGCACTACGCCAGCCAGAGAGACGGGATACGC
65 ACCGACGAAACGAGCGGGC-GATCGGGC-GGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGC
*
20614002 AAG-TCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
128 AAGCT-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
20614066 CCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAA
192 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
20614131 GACGACTCATTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCTGGATTTTTT-AAATTT
257 GACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
** * *
20614195 TTTCGAAAGGATTTTTGGCCCCAAACTTTCTAGACGTGATCCTTGTATTTTTGTTAGCATGCAAA
322 TTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
20614260 AAAAATTCAGCCAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCAATT
387 AAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-ATT
* *
20614325 TCAGACACTTTAATGGCTACTGGCAGCAGACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTG
451 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
20614390 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
516 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
20614455 ATCATGTGCGCACACCCCCCGGCCCCCCCGACCGCCGGAACCCAAATGCTGCCAGTCAGGTTCTC
581 ATCATGTGCGCACACCCCCCGGCCCCCCCGACCG-CGGAACCCAAATGCCGCCAGTCAGGTTCTC
* * *
20614520 CAACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACCTGCCCGAGCCTA
645 CGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTA
*
20614585 GCATGTGCTGTTGCAACCCTCGGTCCCGTCCTAACTTAGACTGAGAATGAACTACGTATGCTTAG
710 GCATGTGCTGTTGCAACCCTCGGTCCCATCCTAACTTAGACTGAGAATGAACTACGTATGCTTAG
** *
20614650 ACTGGGAATCAACTCCGTATGCAGAAGTCAACCCACGAAACGAGCGTGAAGGCGCTCAGCCGGCC
775 ACTGGGAATCAACTCCGTATGCAGAAGTCAACCCACGAAACGAGCGTGAAGGAACTCAGCCGACC
* * * ***
20614715 AGAGGGGCGGGATGCGCAAGCCGGGGATC-GACAGGGTCCCCCTCCATGTACTGTTGATCC
840 AGAAGGGCGGGATGCGCAAGCCGGGG-TCGGACA-CGTCCCCCTCCACGTACTACCGATCC
**
20614775 TGCTGTCGCAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
20614840 CCGACGAAACGAGCGGGCGATCGGGCGGCCGGGCACTATGCCAGCCAGAGAGACGGGATGCGTAA
66 CCGACGAAACGAGCGGGCGATCGGGCGG-CGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
20614905 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
130 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
20614970 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
20615035 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTT
260 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* ** **
20615100 CGAAAGGAGTTTTGGCCCCAAACCCGGTAGACGTGATCCTTGTATTCATGTTGGCATGCACAAAA
325 CGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
20615165 AATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTCGAAAAAAGTGTCACCATTTCA
390 AATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTC-CCATTTCA
* *
20615230 GACACTTTAATGGCTACTGGCAGCATACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
20615295 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATC
519 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
20615360 ATGTGCGCACACCCCCCGGCCCCCCCGACCGTCGGAACCCAAATGCCGCCAGTCAGGTTCTTCGA
584 ATGTGCGCACACCCCCCGGCCCCCCCGACCG-CGGAACCCAAATGCCGCCAGTCAGGTTCTCCGA
* *
20615425 CGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCA
648 CGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCA
*
20615490 TGTGCTGTTGCAACCCTCGGTCCCATCCTAACTTAGACTGGGAATGAACTACGTATGCTTAGACT
713 TGTGCTGTTGCAACCCTCGGTCCCATCCTAACTTAGACTGAGAATGAACTACGTATGCTTAGACT
* * *
20615555 GGGAATGAACTCCGTATGTC-TAAGTCAACCCACGAAACGAGCGT-ACAGGAACTCAGCTGACCA
778 GGGAATCAACTCCGTATG-CAGAAGTCAACCCACGAAACGAGCGTGA-AGGAACTCAGCCGACCA
* ** *
20615618 GAAGGGCGGGATGCGCAAGCCGGGGTCGGCCACGTCCCCCTCTGCGTGCTACCGATCC
841 GAAGGGCGGGATGCGCAAGCCGGGGTCGGACACGTCCCCCTCCACGTACTACCGATCC
* * * * *
20615676 TAC-ATCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
20615740 CCGATGAATGAGCGAGCGGGC-AGTC---CGGCGGGCACTACGCCGGGCAGGGA-AGTGGGATGC
66 CCGACGAA--A-CGAGCGGGCGA-TCGGGCGGCGGGCACTACGCCAGCCAGAGAGA-CGGGATGC
* * * ** *
20615800 GCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTCAGGCACATCTTCATATTTCTGTGTTCCAAT
126 GCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
20615865 GGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCA
191 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** * *
20615930 AGACCACTCGTTTTCTATTTTTCATGATTTACGAAACTTTTTACGGTTCGGGATTTTGTAAAATT
256 AGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATT
* *
20615995 TTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTG-TGGCATGCAC
321 TTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
20616059 AAAAAAATTCAGTTAAAAACTCAAAGTGT-AAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCC
386 -AAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTG-TCCCA
20616123 TTTCAGACACTTTAATGGCTA-TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
449 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
20616187 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGC
514 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
20616251 ACATCATGTGCGCACACTCCCCCCGGCCCCCTCGATCGCTGAAACCCCAATGCCGTCGGTCAGGT
579 ACATCATGTGCGCACA--CCCCCCGGCCCCCCCGACCGC-GGAACCCAAATGCCGCCAGTCAGGT
* **
20616316 TCTCCGATGATGCTCCGATGATGGTGCCCCAACGAAGAAAAATGCGGCA
641 TCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCA
20616365 TCTTAGACTA
Statistics
Matches: 1454, Mismatches: 117, Indels: 41
0.90 0.07 0.03
Matches are distributed among these distances:
896 47 0.03
897 74 0.05
898 145 0.10
899 279 0.19
900 70 0.05
901 308 0.21
902 517 0.36
903 14 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGATCGGGCGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAG
CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
GAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
ATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGACCGCGGAACCCAAATGCCGCCAGTCAGGTTCTCCGACGA
TGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGT
GCTGTTGCAACCCTCGGTCCCATCCTAACTTAGACTGAGAATGAACTACGTATGCTTAGACTGGG
AATCAACTCCGTATGCAGAAGTCAACCCACGAAACGAGCGTGAAGGAACTCAGCCGACCAGAAGG
GCGGGATGCGCAAGCCGGGGTCGGACACGTCCCCCTCCACGTACTACCGATCC
Found at i:20616417 original size:26 final size:26
Alignment explanation
Indices: 20616366--20616418 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20616356 AATGCGGCAT
*
20616366 CTTAGACTAGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
20616392 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20616418 C
1 C
20616419 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20618737 original size:903 final size:895
Alignment explanation
Indices: 20616364--20621045 Score: 5439
Period size: 903 Copynumber: 5.3 Consensus size: 895
20616354 AAAATGCGGC
* *
20616364 ATCTTAGACTAGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAAC
1 ATCTTAGACT-GGAATGAACTCGATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** * * * * **
20616429 TCATGAAATAAGCGTACGGGCGCTCAGTCGGCTAGAGGGGCGGGATAAGCTAGCCGGGGATCGAC
65 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCTAGCCGGGGATCGAC
* * * * * *
20616494 TGCGTCCCCCTCTGCGTGCTACGGATCCTGCTACTGCAACCCTCAATCCGGTCTGATCTTAGACT
130 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACT
* * * **
20616559 AGGAATGAACTCCATATGCCTAAGGCAACCGACGAAACGAGCTGGCAGGCGATCGGGCGGGCACT
195 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG--GG--GGCGGGCGGGCGGGCACT
* * *
20616624 ACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGGCAC
256 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
20616689 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAA
321 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * * *
20616754 GCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTCGAAACATTT
386 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* ** *
20616819 TACGGTTCGGGATTTTTTAAAA-TTTTTCGAAATAAGTTTTAGCCCCAAACTTGGTAGACGTGAT
451 TACGGTTCGAGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
20616883 CCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGT
515 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
20616948 GACCATTTGAAAAAAGTGTCCTCATTTAG-ACACTTTAATGGGTACTGGTAGCAAACCTGTAAAA
580 GACCATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
20617012 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTGTGATGATGGATAGGGGGCCAATAAAA
645 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
20617077 GGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACA-CCCCCGGCCCTCCCGATCGCCGGA
710 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGCCGAA
* * * ** ***** * **
20617141 ACCCTAATGCTGTCGGTCAGGTTCTCTGATGATGCT-C--CGATGAAGAAAAATATGGCACCGGC
774 ACCCCAATGCTGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTG-CCCCGAT-G-A-AGAA
* * * * * * * * *
20617203 AGATGCTGG----GGCACATGCTCAAGCCGAGGATGTGCTACCGCAACCATCAGTCTGATCCG
835 AAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCA-TCTGGTCCG
* * * * *
20617262 ATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCTGTATTCCTAAGTCAAC
1 ATCTTAGACT-GGAATGAACTCGATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* ** * * *
20617327 CCATGAAACGAGCGTGATGGCGCTCAGTCGGCCAGAGGGGCGGGATGCG-TAAGCCGGGAATCGA
65 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCT-AGCCGGGGATCGA
* * * * * *
20617391 CCGAGTCCCCCTCTACGTGTTGTCGATCCTACTACCGCAACCCTCGATCCAGTCTGATCTTAGAC
129 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGAC
* ** *
20617456 TGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA----GCGGATGGGCGAGCACTACG
194 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCGGGCGGGCACTACG
* * * *
20617517 CCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGATGGTAGGTGGGTTTAAGTACATC
259 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * *
20617582 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAACC
324 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * * **
20617647 TTCACATGATGTTTCATGGCAACACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAC
389 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * *
20617712 GGTTC-AGGCTTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCG
454 GGTTCGA-GATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
20617776 TTGTATTTTTGTTGGCATGCACAAAATAATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGA
517 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * **
20617841 CCATTTGAAATAAGTGTCCTCATTTCGAACACTTTAATGGCTACTGGCAGCAGTCCTGTAAAATC
582 CCATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
20617906 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
647 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
20617971 GCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCTTCCGATCACCGAAAC
712 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGCCGAAAC
* * * * * *
20618036 CCTAATGCTACCGGTCAGGTTCTCCGATGATGCTCCTGTGATGGTGCCCCGGTGAAGAAAAATAC
776 CCCAATGCTGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGC
*
20618101 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCTGGTCCG
841 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-ATCTGGTCCG
*
20618157 ATCTTAGACTAGGAATGAGCTCGATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACT-GGAATGAACTCGATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
20618222 CCACGAAACAAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCAGGATGCGCTAGTCGGGGATCAAT
65 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCTAGCCGGGGATCGAC
* * * ** *
20618287 CGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCACAACCCTCGATCTAGTCTGTTCTTAGACT
130 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACT
* *
20618352 AGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTGGGTTGGCGGGCGGGCGGGCACT
195 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GGG--GGCGGGCGGGCGGGCACT
* ** * *
20618417 ATGCCGGCCAGAGAGACAAGATGCGCATGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCAC
256 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * * ***
20618482 ATATTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATATAAT-ATTGTTTAA
321 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
20618546 GCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
386 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
** * * **
20618611 TGTGGTTTGAGATTTTTTATAATTTTTTCAGAAGGAGTTTTTGGCCCCAAACTTCTTAGACGTGA
451 TACGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGA
20618676 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
514 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
20618741 AGACCATTTGAAAAAAGTGTACCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
579 TGACCATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
20618806 ATCTCAAATGCTCTTTAAGGAGGTGTGA-TGTCTCAAGGTTTGAT-AGGGGATAGGGGGCCAATA
644 ATCTCAAATGCTCTTTAAGGGGGTGTGAGT-TCTCGAGGTTTGATGA-GGGATAGGGGGCCAATA
* * * * *
20618869 TAAGGGCCAAATACCAGCACCCATCGTACATCATGTGTGCACACCCTCCGGCCCCCCTGATCGTC
707 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCC
* * * **
20618934 GAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAA
771 GAAACCCCAATGCTGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGATGAAGAAA
* * * ** *
20618999 AATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCCAGTCTG
836 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCA-TCTGGTCCG
*
20619060 ATGTTAGACTGGGAATGAACTTCG-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACT-GGAATGAAC-TCGATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
20619124 CCCATGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCAGGGATCGA
64 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCTAGCCGGGGATCGA
* * * ** * * * *
20619189 CCAGGTCCCCCTCTTCGTGCTGTCGATCCTATTGCCGTAACCCTC-AGTCTGGTCTGATCTTCGA
129 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGA
* * *
20619253 ATGGGAATGTACTCCGCATGCCTAAGCCAACCGACGAAACGA----GC-GGCGGGCGGGCACTAC
193 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCGGGCGGGCACTAC
* * * * * *
20619313 GCCGGACAGAGAGACGGGACGTGCAAGCCATGGATTGATAGGGTGGTAGGTGAGTTTAGGCACAT
258 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
20619378 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGC
323 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
20619443 CTTCACCTGAAGTTTCATGGCAAGACGACTCGTATTCTATTTTTCACGATTTTTGAAACTTTTTT
388 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * * *
20619508 TGGTTCGGGATTTTTTAAAAATTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGCCGTTATCC
453 CGGTTCGAGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
20619573 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGGAGTGTATAAGATTTTGTGA
517 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
** * *
20619638 CTGTTTGAAAAAAGTGCCCCCATTTC-AGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
582 CCATTTGAAAAAAGTGTCCCCATTTCGA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
20619702 CTCAAATGCCCTTTAAGGGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGCGGCCAATA-AAG
646 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * * *
20619766 GGCCAAGTACCAGCACTCATTGCACATCATCTGTGCACA-CCCCCGGCCCCCCTGATCACCGGAA
711 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGAAA
* * * ** *
20619830 CCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTCGGCGAAGAAAAATA
775 CCCCAATGCTGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATG
* * * * *
20619895 CGGCACCAGGACATGCCCGAGCACAGCATGTGCTGCTGTAACCCTCAATCCGGTCCG
840 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-ATCTGGTCCG
*
20619952 ATCTTAGACT----TG-----G--A-----A-AC--------AACTCCGTATGCATAAGTCAACC
1 ATCTTAGACTGGAATGAACTCGATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
20619992 CACGAAACGAGCGCGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGC-AGGCCGGGGATCGAC
66 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCTA-GCCGGGGATCGAC
** * **
20620056 CGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCGCAACCCTC-AGTCCGGTCCAATCTTAGAC
130 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGAC
* * * *
20620120 TGGGAATGAACTCCGTATGCCTACGCCAACCGACCAAACGAGCGGGCGGGCGAGCGGGCACTACG
194 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCGGGCGGGCACTACG
* * * * * *
20620185 CCGGCTAGAGAGACGGTATGCACAAGTCGTGCATCGTTAGGGTGGTAGGTGGGTTTAGGCACATC
259 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
** * *
20620250 TTCATATTTCTATGTGCGAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCC
324 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
20620315 TTCCCGTAAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGA-TTTTCAACACTTTTTA
389 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA-ACTTTTTA
* * * *
20620379 CGGTTCGAGATTTTTTAAAATTTCTTCGAAAAGATTTTTGGCCCCAAACTTGGTAGAGGTGATCC
453 CGGTTCGAGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * * * *
20620444 TTGTATTTTTGTTGTCACGCACAAAACAATTCAGCTGAAAACTCAAAGCGTACAAGATTTTGTGA
517 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
20620509 CCATTTGAAAAAAGTGTCCCCATTTTTG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
582 CCATTTGAAAAAAGTGTCCCCA-TTTCGAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
20620573 CTCAAATGCTTTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCGATATAAG
646 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
20620638 GGCCAAGTACCAGCACCCATCGTACATCATATGCGCA-ACCCCTCGGGCCCCCCCGATCACCGGA
711 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGG-CCCCCCGATCGCCGAA
* * *
20620702 ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGTCGATGCTCCGGCGATGGTGCCTCGA
774 ACCCCAATGCTGCCGGTCAGGTTCT-C--CGA-------T-GATGCTCCGGCGATGGTGCCCCGA
* *
20620767 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-TC--G-
828 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCATCTGGT
20620826 --G
893 CCG
20620827 ----T---CT-G-AT---C-C-A-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
1 ATCTTAGACTGGAATGAACTCGATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * ** * * **
20620876 CATGAAACAAGCGTGCGGACACTCAGCCGGCCAGAGTTG-TGGAATGCGCAAGCCCAGGATCGAC
66 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGG-ATGCGCTAGCCGGGGATCGAC
* * * * *
20620940 GGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCTACTCTC-AGTTCGGTCTGATCTTAGAC
130 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGAC
* * *
20621004 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
194 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
20621046 CGTGCAGGCG
Statistics
Matches: 3267, Mismatches: 435, Indels: 178
0.84 0.11 0.05
Matches are distributed among these distances:
865 1 0.00
866 167 0.05
868 2 0.00
870 9 0.00
871 401 0.12
872 41 0.01
873 37 0.01
874 9 0.00
875 3 0.00
876 4 0.00
878 1 0.00
880 3 0.00
881 1 0.00
882 1 0.00
883 5 0.00
884 233 0.07
885 1 0.00
887 2 0.00
890 206 0.06
891 119 0.04
892 273 0.08
893 93 0.03
894 319 0.10
895 345 0.11
896 7 0.00
897 1 0.00
898 200 0.06
901 6 0.00
902 89 0.03
903 685 0.21
904 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
ATCTTAGACTGGAATGAACTCGATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCTAGCCGGGGATCGACC
GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
TTCGAGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGAAACCCCAA
TGCTGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCATCTGGTCCG
Found at i:20619099 original size:26 final size:26
Alignment explanation
Indices: 20619063--20619114 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20619053 CAGTCTGATG
*
20619063 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20619089 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20619115 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20620745 original size:11 final size:11
Alignment explanation
Indices: 20620725--20620757 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
20620715 CGGTCAGGTT
20620725 CTCCGGCGATG
1 CTCCGGCGATG
*
20620736 CTCCGTCGATG
1 CTCCGGCGATG
20620747 CTCCGGCGATG
1 CTCCGGCGATG
20620758 GTGCCTCGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.36, G:0.33, T:0.21
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:20621125 original size:159 final size:159
Alignment explanation
Indices: 20620835--20621211 Score: 481
Period size: 159 Copynumber: 2.4 Consensus size: 159
20620825 GGTCTGATCC
20620835 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGACACTC
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGACACTC
** * * * *
20620900 AGCCGGCCAGAGTTGTGGAATGCGCAAGCCCAGGATCGACGGGGTCCCCCTCTGCGTGCTGTCGA
66 AGCCGGCCAGAGGGGCGGAATGCGCAAGCCCAGGATCGACGAGGTCCCCCTATGCGTGCTGCCGA
* *
20620965 TCCTGCTACCGCT-ACTCTCAGTTCGGTCT
131 TCCTGCTACCG-TAACCCTCAGTCCGGTCT
* * *
20620994 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGG-CGCT
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGC-GGACACT
* ** * *
20621058 CAGTCC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTAGGTCCCCCTATGTGTGCTGCC
65 CAG-CCGGCCAGAGGGGCGGAATGCGCAAGCCCAGGATCGACGAGGTCCCCCTATGCGTGCTGCC
* *
20621122 GATCCTGCTATCGTAACCCTCTGTCCGGTCT
129 GATCCTGCTACCGTAACCCTCAGTCCGGTCT
* * * * ** *
20621153 AATCTTAGACTGGGAGTGAACTCCGTATGCTTAAGCCAACCGACAAAACAAGCGGGCGG
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGG
20621212 GCGGTCGGGC
Statistics
Matches: 188, Mismatches: 27, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
158 3 0.02
159 181 0.96
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGACACTC
AGCCGGCCAGAGGGGCGGAATGCGCAAGCCCAGGATCGACGAGGTCCCCCTATGCGTGCTGCCGA
TCCTGCTACCGTAACCCTCAGTCCGGTCT
Found at i:20621910 original size:26 final size:26
Alignment explanation
Indices: 20621860--20621912 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20621850 CCGATCCGAT
* *
20621860 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGCGAATGAACTACGTATG
*
20621886 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTACGTATG
20621912 C
1 C
20621913 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTACGTATG
Found at i:20623319 original size:905 final size:896
Alignment explanation
Indices: 20623308--20628710 Score: 6309
Period size: 847 Copynumber: 6.2 Consensus size: 896
20623298 TGCACAAGAA
*
20623308 AATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
20623372 GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAG
66 G-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
20623437 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACAT
130 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** * * * * *
20623502 CATGTGTGCACACCCCCCAGCCCTTCCGATCACCAGAACCCTAATGCCGCCGGTCAGGTTCTCTG
195 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
*
20623567 GTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGC
260 GTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * *
20623632 ATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCTTAGAC
325 ATGTGCTGCCACAA-CCTC--TCCGGTC-GATCTTAGACTGGGAATGAACT-CGTATGCTTAGAC
* * *
20623697 TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCAGCCAG
385 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * ** *
20623762 AGGGGCAGGATGCACAAGCCGGGGATAGGCCGGGTCCCCCTCTACGTGCTACTGATCAAGCTGCC
450 AGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGT-CCCCTCTACGTGCTGCCGATCCTGCTGTC
* ** * * * *
20623827 ACAACCCTTCGGTTTGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCTAATCGACG
514 GCAACCC-TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
20623892 AAACGA-----------GCGGGCAGGCACTACGCCGACAAGAGAGACGGGATGCGCAAGCCGTGG
578 AAACGAGCGGGCGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
20623946 AAT-GATAGGGTCGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
643 -ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* ** * *
20624010 TGGCTTGTAAATTCATACAACGGTCGTTTAAGCATTCACGTGAAGTTTCATGGCAAGATGACTCG
707 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
**
20624075 TTTTCTA-TTTTCACGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCAAAA
772 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAA
* * * * *
20624138 GGATTTTTGGCTCCAAACTTGGTACACATGAT-CTCCGTATTTTTGTTGGCATGCACAAAAA
836 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT-TGTATTTTTGTTGGCATGCACAAAAA
* *
20624199 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTGA
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20624264 GACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGT
66 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
20624329 TCTTGAGGTTTGATGGGGGACAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATC
131 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
20624394 ATGTGCGCACACCCCCCGGCCCGCCCAATCGTC-GAAACCCAAT---GTC-GTC-GG---TCAGG
196 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* *
20624450 T--T-CTCCGACGATGGTGCCCCGATGAAGAGAAATGCGGCACCAGCACATGTCCGAGCCCAGCA
261 TGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* ** * *
20624512 TGTGCTACCGTAATCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
326 TGTGCTGCCACAA-CC-T-CTCCGGT-CGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACT
** * *
20624577 GGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGA
386 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * **
20624642 GGGGC-GTGATGCGTAAGCCAGGGATCGACTGGGTCCCCCTCTACGTGCTGCCGATCTTGCTACC
451 GGGGCAG-GATGCGCAAGCCGGGGATCGACCGGGT-CCCCTCTACGTGCTGCCGATCCTGCTGTC
* **
20624706 GCAACCCTTGGTGTGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
514 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
20624770 AACGAGCGAGCAAGCGGGCGGGCAGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCATGCC
579 AACGAGCG-G---GC-GGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * *
20624835 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTAACATTTCTGCATGCCAATTCCATTT
639 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* *
20624900 TTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGAC
704 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
20624965 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-CGGTTCGAGATTTTTTTAAATTTTTTTGG
769 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
*
20625029 AAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
834 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
20625092 CATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCCTTTGAAAAAAGTGTCCCCATTTCA
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
20625157 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
66 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** *
20625222 TCTTAAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCA-CTGCACAT
131 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACAT
* * * * *
20625286 CATGTGCGCACACCCCCCGACCCTCCCGATTGCTGGAACCCCAATGCCGTCGGTCAAGTTCTCC-
195 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* ** * * * *
20625350 GTCGACGCTCCGGTGATGGTGCCCTGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAG
260 GT-GATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
20625415 TATGTGCTGCCACAACCCTCAGTCCAGTACGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
324 CATGTGCTGCCACAA-CCTC--TCCGGT-CGATCTTAGACTGGGAATGAACT-CGTATGCTTAGA
*
20625480 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTC-GGAGCTCAGCCGGCC
384 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCGCTCAGCCGGCC
* * * * * *
20625544 AGAGGGGCAGGATGCGTAAGCCAGGGATTGGCCGAGTTCCCCTCTGCGTGCT----A---T--TG
448 AGAGGGGCAGGATGCGCAAGCCGGGGATCGACCG-GGTCCCCTCTACGTGCTGCCGATCCTGCTG
* * * * *
20625600 T---AACCCTCAGTCCGGTCTGATATTTGACTAGGAATGCACTCCGTATGCGTATGCCTAAGCCA
512 TCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-C-----CGTATGCCTAAGCCA
* * * * *
20625662 ACTGATGAAACGAGC---AGGTGGGTGGGC--G--CTACGTCGGCCAGAGAGACGGGATGCGCAA
571 ACCGACGAAACGAGCGGGCGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
20625720 GCCATGGATCAATAGGGTGGTAGGTGGCTTTCGGCACATCTTCATATTTCTGTGTGCCAATGCCA
636 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
20625785 TTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
701 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
20625850 GACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
766 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
20625915 TGGAAAGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
831 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
20625979 A
896 A
* * *
20625980 AACTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCA
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
20626045 AACATTTTAACGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
66 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
20626110 TCTCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGTCGAGTACCAG----CA---C-C--C
131 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
20626165 A--T---CACACCCCCCGGCCCCCTCGATTGCCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGG
196 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * ** *
20626225 TGATGCTCTGACGATGGTGCCCCAATGAAGAAAAATACGGCAGTAGCACATGCCCGAGCCCTGCA
261 TGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
20626290 TGTGCTGCCACAA---C-CC--TCGA---T---CT---AAT---C-C-AAT-CTTAGACTGGGAA
326 TGTGCTGCCACAACCTCTCCGGTCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAA
*
20626334 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTC-GGAGCTCAGCCGGCCAGAGGGG
391 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCGCTCAGCCGGCCAGAGGGG
* * * * * *
20626398 CAGGATGCGTAAGCCAGGGATTGGCCGAGTTCCCCTCTGCGTGCT----A---T--TGT---AAC
455 CAGGATGCGCAAGCCGGGGATCGACCG-GGTCCCCTCTACGTGCTGCCGATCCTGCTGTCGCAAC
* * * * * * *
20626451 CCTCAGTCCGGTCTGATATTTGACTAGGAATGCACTCCGTATGCGTATGCCTAAGCCAACTGATG
519 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-C-----CGTATGCCTAAGCCAACCGACG
* * * *
20626516 AAACGAGC---AGGTGGGTGGGC--G--CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGG
578 AAACGAGCGGGCGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
20626574 ATCAATAGGGTGGTAGGTGGCTTTCGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
643 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
*
20626639 GGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
708 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
20626704 TTTCTATTTTTCAGGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAG
773 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
*
20626769 AGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
838 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
20626827 AACTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
20626892 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTTAAGGGGGTGTGAG
66 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC-TCTTTAAGGGGGTGTGAG
* * * *
20626957 TTCTTGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGTACAT
130 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * *
20627022 CATGTGCACACACCCCCCGACCCCCTCGATCGTCGGAACCCCAATGCTGCCGATCAGGTTCTTCG
195 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * *
20627087 GCGATGCTCCGGCGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCA-ATGCCCGAGCCCAGC
260 GTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * *
20627151 ATGTGCTGCCGTAACC-CT----T-GGTC-----C--GG--T---C-CG-AT-CTTACACTGGGA
325 ATGTGCTGCCACAACCTCTCCGGTCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGA
* * * * *
20627195 ATGAACTCCGTATGCCTAGGTCAACCCAAGAAACGAGCGTGCGGGTGCTCAACCAGCCAGAGGGG
390 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * ** * * *
20627260 CAGGATGCGCAAACCGGGGATCGACCGGGTCGCCCTCTGCGTGCTAACGATCCTGTTGCCACAAC
455 CAGGATGCGCAAGCCGGGGATCGACCGGGTC-CCCTCTACGTGCTGCCGATCCTGCTGTCGCAAC
* * * * * *
20627325 CCTTGGCCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAACCCAACCGACAAAACGA
519 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
20627390 GTGGGC--T-GGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGAT
584 GCGGGCGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
20627452 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCTTGCCAATGCCATTTTTATGGCTTG
649 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* * * *
20627517 TAAATACATACAACGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCATTTTCTA
714 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
20627582 TTTTTCATGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTTAAATTTTTTCGCAAGGAGTTTT
779 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
** *
20627647 ATCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCAC-AAAA
844 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
20627699 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
20627764 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
66 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
20627829 TCTCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGTCGAGTACCAG----CA---C-C--C
131 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
20627884 A--T---CACACCCCCCGGCCCCCTCGATTGCCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGG
196 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * ** *
20627944 TGATGCTCTGACGATGGTGCCCCAATGAAGAAAAATACGGCAGTAGCACATGCCCGAGCCCTGCA
261 TGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
20628009 TGTGCTGCCACAA---C-CC--TCGA---T---CT---AAT---C-C-AAT-CTTAGACTGGGAA
326 TGTGCTGCCACAACCTCTCCGGTCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAA
* *
20628053 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAGCCGGCCAGAAGGG-
391 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * *** * * * * *
20628117 AGGGGTGTGCAAGATAGCGATCGACTGGGTCCCCTTCTGCGTGCTGTCGATCCTGCTGCCGCAAC
456 A-GGATGCGCAAGCCGGGGATCGACCGGGTCCCC-TCTACGTGCTGCCGATCCTGCTGTCGCAAC
*** * * ** *
20628182 CCTCGGTCCAAACT-AGTCTTAGACTGGGAATGAACTGCGTATGCTTAAGCCAAATGATGAAACG
519 CCTCGGTCCGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
20628246 AGCGGGCAGGTAGGCAGGCGGGCAGTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCG
583 AGCGGGC-GGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
20628311 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTCCCAATGCCATTTTTATGGCT
647 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * *
20628376 TGAAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTT
712 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
20628441 TATTTTTCACGATTTTTCAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTTC-GAAGTAGT
777 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCGGAAGGAGT
* * * * *
20628505 TCTGG-CCCAAACATGGTAGACTTGATCCTTGTATTTTGGTTGGCATGCATAAAAA
841 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
20628560 AATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCA
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
20628625 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
66 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
20628690 TCTCGAGGTTCGATGAGGGAT
131 TCTCGAGGTTTGATGAGGGAT
20628711 GCGTAAGTCA
Statistics
Matches: 4005, Mismatches: 390, Indels: 264
0.86 0.08 0.06
Matches are distributed among these distances:
847 612 0.15
848 67 0.02
849 1 0.00
851 1 0.00
852 2 0.00
854 3 0.00
855 1 0.00
856 96 0.02
857 206 0.05
858 2 0.00
859 1 0.00
860 43 0.01
861 374 0.09
862 143 0.04
863 94 0.02
864 2 0.00
866 3 0.00
867 2 0.00
868 30 0.01
869 3 0.00
870 1 0.00
871 67 0.02
872 330 0.08
873 158 0.04
874 34 0.01
876 1 0.00
877 48 0.01
878 12 0.00
879 224 0.06
880 4 0.00
881 1 0.00
882 5 0.00
884 2 0.00
885 2 0.00
886 3 0.00
887 2 0.00
888 394 0.10
889 38 0.01
890 9 0.00
891 209 0.05
892 12 0.00
893 459 0.11
894 54 0.01
895 1 0.00
896 1 0.00
897 3 0.00
898 4 0.00
899 1 0.00
900 28 0.01
901 3 0.00
902 2 0.00
904 1 0.00
905 202 0.05
906 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
TGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCACAACCTCTCCGGTCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
AGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTCTACGTGCTGCCGATCCTGCTGTCGCAACCC
TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
GGGCGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
Found at i:20625484 original size:26 final size:26
Alignment explanation
Indices: 20625448--20625500 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20625438 CCAGTACGAT
20625448 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20625474 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20625500 C
1 C
20625501 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20629539 original size:26 final size:26
Alignment explanation
Indices: 20629500--20629552 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20629490 CAGATTCGAT
**
20629500 CTTAGACTTTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20629526 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20629552 C
1 C
20629553 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20630439 original size:26 final size:26
Alignment explanation
Indices: 20630403--20630455 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20630393 CCAATCTGAT
*
20630403 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20630429 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20630455 C
1 C
20630456 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20632286 original size:877 final size:874
Alignment explanation
Indices: 20628730--20633817 Score: 5601
Period size: 877 Copynumber: 5.8 Consensus size: 874
20628720 AGGGATCAGC
* * * *
20628730 CGGGTCCCCCTCTACATGCTATCGATCCTACTGCCGTAACCCTCGGTCCTG-TTCAATCTTAGAC
1 CGGGT-CCCCTCTACGTGCTACCGATCCTACTGCCGCAACCCTCGGT-CTGATCCAATCTTAGAC
* * *
20628794 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA--TG-AGCGGGCGGGCGGGCACT
64 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-AACGGGCGGCGGGCGGGCGGGCACT
* * * * * * * * * *
20628856 ATGTCGGTCAAAGAAACGGGATGCGTAAGCCGTAGATTGATAGGGTGGTAGGTGGTTTTAGGCAC
128 ACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
20628921 ATCTTCATATTTCTACGTG--CCAATGCCACTTTTATGGCTTGTAAATTCATACAATGCTCCCTT
193 ATCTTCATATTTCT--GTGCACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
20628984 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTT
256 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
** * * *
20629049 TTTACGGTTCTTGATTTTTCAAAATTTTTTC-AGAAGGAGTTTTGGCCCCATACTTGGTAGACGT
321 TTTACGGTTCAGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGTTAGACGT
* * * * *
20629113 GATCCTTGGATTTTTCTTGGCATGGAAAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTT
385 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
20629178 TGTGACCGTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTA
450 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
20629243 AAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTC-ATGGTTTGATGAGGGATAGGGGGCCAAT
515 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAAT
* * * *
20629307 ATAAGGGCCAAGTACCAGCTCCCATCCCACATCATGTGCACACACCCCCC--GACCCCCCGATCA
579 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCA
* * * *
20629370 CCAGAACCCCAATGCTGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCGCCGATGAAGA
644 CCAGAACCCCAATGC-GTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * *
20629435 AAAATGTGGCACCAGCACTTGCCCGAGCCCAACAT-TAGCTGCCGCAACCCTTGGTCAGATTCGA
708 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTA-CTGCCGCAACCC----TC-G----G-
20629499 TCTTAGACTTTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
762 TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
20629564 ACACGAAACGAGCGTGCGGGTGCTCAGCGGACCAGAGGGGTGGGATGAGCAAG-TCGGGGATCGG
811 -CACGAAACGAGCGTGCGGGCGCTAATCAGACCAGAGGGGTGGGATGCGTAAGCT-GGGGATCGA
20629628 T
874 T
* * * * * * * *
20629629 CGAGTCCCCTTCTATGTGCTGCCGATCTTGCCGCCGCAACCCTCTGTCCAGA-CCAATCTTAGAC
1 CGGGTCCCC-TCTACGTGCTACCGATCCTACTGCCGCAACCCTCGGT-CTGATCCAATCTTAGAC
* * ** ** *
20629693 TGGGAATGAACTCCGTATGCCTAATCCAACCGACGAAACGAGTGGGCTGGTAGACGGGCGGGCAC
64 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-AACGGGC-GGCGGGCGGGCGGGCAC
* *
20629758 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCA
127 TACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
20629823 CATCTTCATATTTC--TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCT
192 CATCTTCATATTTCTGTGCA--CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
20629886 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACT
255 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * *
20629951 TTTTGCGGTTCAGGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTTTTAGACGT
320 TTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGTTAGACGT
* * * * * *
20630016 GATACTTGTATTTTTTTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCAAAATGTACAAAATTT
385 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
20630081 TGTGACCCTTTGAAAAAAGTGTCCCCATTTCAAACATTTTAATGGCTACTGGCAGCAAACCTGTA
450 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
20630146 AAATCTGAAATGCTC--TAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATA
515 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * * *
20630209 TAAGGGCCAAGTATCAACACCCATCGCACATCATTTGTGCACACCCCCCTGACCCCCCCGATCGC
580 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCAC
* * * *
20630274 CGGAACCCCAATGCTGCCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
645 CAGAACCCCAATGC-GTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* * * * * ** *
20630339 AAATGCAGCACCAGCACATGCCCGAGCCCAACATGTGCTGCTGTAACCCTCGGTCCAATCTGATC
709 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCCTCGGTCCGGTCCGATC
* ** * * * * **
20630404 TTAGACTGGGAATGAACTCCGTATG-CTTAG---A--CTGGGAATGAAC-TCCATATGC-CTAAG
774 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC--GGGCGCTAA-
* * *** * *
20630461 TCA-ACC-CA-TGGAACGA-GCGT-A-C-GGGCACTC-AG
836 TCAGACCAGAGGGGTGGGATGCGTAAGCTGGGGA-TCGAT
** *** * * *** * * *** * * *
20630493 CTAG-CCAGAGGGGCGA-GATGCAAAGCCGAGGAT-CGGCTGGGTCCC-C-CTCT-A--CGAGC-
1 CGGGTCC----CCTCTACG-TGC-TA-CCGATCCTACTGCCGCAACCCTCGGTCTGATCCAATCT
* * * * * **
20630549 -GGCCTGGGAATGAAGTCCGTATGCCTAAGCCAATCGATGAAATGAACGGGCAGGCGGGCGGGCG
59 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CAAAACAACGGGC-GGCGGGCGGGCG
* * * * *
20630613 GGCACTACGCCAACCAGAGAGACGGGATGCACAAGCCGGGGATCGATAGAGTGGGAGGTGGGTTT
122 GGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
20630678 AGGCACATCTTCATATTTC--TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
187 AGGCACATCTTCATATTTCTGTGCA--CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
20630741 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTTGCTTTCTATTTTTCAGGATTTTAG
250 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** *
20630806 AAACTTTTTACGGTTCTTGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTTTTA
315 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGTTA
* * *
20630871 AACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGAACAA
380 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
20630936 GATTTTGTGACCCTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
445 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * **
20631001 CTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTTG-TGAAAGATAGGGGG
510 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGGGG
* * * *
20631065 CCAATATAAGGGCTAAGTTA-CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGTCCCCT
574 CCAATATAAGGGCCAAG-TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCC
** * * * ** *
20631129 CGATCGTCAGAACCCTAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGG
638 CGATCACCAGAACCCCAATG-CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
* * * * * * *
20631194 TGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCGGCAACCCTTGGTCCGA
702 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCCTCGGTCCGG
** * *
20631259 TCCGATCTTAGACTGGGAATGAACTGTGTATGCCTAAGTCAACCCACGAAACGAGGGTGCAGGCG
767 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
** * * * *
20631324 CTAGGCCGACCAGAGGGGTGAGATGCGCAAGCTGGAGATCGAT
832 CTAATCAGACCAGAGGGGTGGGATGCGTAAGCTGGGGATCGAT
* * * * *
20631367 CGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCCAATCTTAGACT
1 CGGGT-CCCCTCTACGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGATCCAATCTTAGACT
* *
20631432 GGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACAAGCGGGCGGACGGGCGGGTGGGCACT
65 GGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAA-CGGGCGG-CGGGCGGGCGGGCACT
* * *
20631497 ATGCCAGCTAGAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
128 ACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
20631562 ATCTTTATATTTCTGTGCACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAA
193 ATCTTCATATTTCTGTGCACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * * *
20631627 GCCTTCACATCAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTTAGGATTTTTGAAACTTTT
258 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * *
20631692 TACGGTTCGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTCGCCCCAAACTTGTTAGATGGGA
323 TACGGTTCAGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGTTAGACGTGA
* * *
20631756 TCCTTTTATTTTTGTTGGCATGCACAAAACAATTCAGCT-AAAACTCGAAGTTTACAAGATTTTG
387 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
20631820 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
452 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * * *
20631885 ATCTCAACTGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATTTA
517 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
20631950 GGGGCCAAGTACCAGCACCCATTGCACATCATGAGCGCACACCCCCCCGGCCCCCCCGATCACCA
582 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCACCA
* * * * *
20632015 AAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGGTGGTGCCCTGACGAAAAAAA
647 GAACCCCAATG-CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAA
* * * * **
20632080 ATGCGACACTAGCACATGCCTGAGCCCAGCGTGTACTGTTGCAACCCTCGGTCCGGTCCGATCTT
711 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * * *
20632145 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGATTAATCAG
776 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG-CTAATCAG
*
20632210 -CCAGAGGGGCGGGATGCGTAAGCTGGGGATCGAT
840 ACCAGAGGGGTGGGATGCGTAAGCTGGGGATCGAT
* * ** *
20632244 CGGGTCTCCCTCTACGTGCTACCGATCCTACTGCCGCAACCCTTGGTCTGGTCTGATCTGAGACT
1 CGGGTC-CCCTCTACGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGATCCAATCTTAGACT
* * * * * * * ** *
20632309 GGGAATGAACTGCATATGCCTAAGCCACCCGACGAAACGA-GCG-GGTGGGCGGGCAAGTACTAC
65 GGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAACGGGCGGCGGGCGGGCGGGCACTAC
* * * *
20632372 GTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACAT
130 GCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
20632437 CTTCATATTTCTACGTG--CCAATGCAATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAA
195 CTTCATATTTCT--GTGCACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * * * *
20632500 GCCTTCACTTGAAGTTTCATGGCCAGACGACTCATTTTTTATTTTTCATGATTTTGGAAACTTTT
258 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * *
20632565 TACGATTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGT-GAACATGA
323 TACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGTTAG-ACGTGA
* * *
20632629 TCCTTGTATTTTT-TCTGGCATGCATAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTTT
387 TCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
20632693 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAA
451 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
20632758 AATCTCAAATGCTCTTTAAGGGGGTCTTAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATAT
516 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
20632823 AAGGGCCAAGTGCCAGCACCCATCGCACATCATGAGCACACACTCCTTCCCTGG-CCCCCCGATC
581 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CC--CCCTGGCCCCCCCGATC
** * * * * *
20632887 GTC-GAAACCCCATTGCCGTCGGTCAGGTTCTCCGACGATACTCTGGCAATGGTGCCCTGACGAA
643 ACCAG-AACCCCAATG-CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA
* * * *
20632951 GAAAAATGCGGCACCAGTACATGCCTGAGCCCAGCATGTTCTGTCGCAACCCTCGGTCTGGTCCG
706 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAA-CC-C--TC-GGTCC-
*
20633016 AGGTTAGCCTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
765 -GG-T--CC-------G--------AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *** *
20633081 CCACGAAACGAGCGTGCGGGCGCTCAGTC-GACCAAAGGGGTAGGATGCGTAACCCAAGGATCGG
810 CCACGAAACGAGCGTGCGGGCGCT-AATCAGACCAGAGGGGTGGGATGCGTAAGCTGGGGATCGA
*
20633145 C
874 T
** * * *
20633146 CGGGTCCCCTTCTGTGTGCTACCGATCCTACTGCCACAACCCTCGGT-TCGGTCCAATGTTAGAC
1 CGGGTCCCC-TCTACGTGCTACCGATCCTACTGCCGCAACCCTCGGTCT-GATCCAATCTTAGAC
*
20633210 TGGGAATGAACTCCGTATGCCTAAGCTAACCGA-AGAAACAA----------GCGGGCGGGCACT
64 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACA-AAACAACGGGCGGCGGGCGGGCGGGCACT
* * * * *
20633264 ACACCAGCCAGAGAAACGGGATGCGCAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTAGGTAC
128 ACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* ** *
20633329 ATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGT-CCTTAA
193 ATCTTCATATTTCTGTGCACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
20633393 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTATGATTTTTAAAACTTTT
258 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* ** * *
20633458 TGCGGTTGGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
323 TACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGTTAGACGTGAT
20633523 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
388 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
20633588 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAA
453 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
20633653 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGAGGGCCAATATAA
518 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
20633718 GGG--ATAGTACCAACACCCATCACACATCATGTCCGCACA-CCCCCTGGCCCCCCCGATCACCG
583 GGGCCA-AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCACCA
*
20633780 GAACCCCAATGCGGCTGGTCAGGTTCTCCGACGATGCT
647 GAACCCCAATGCGTC-GGTCAGGTTCTCCGACGATGCT
20633818 TGTATTTTGG
Statistics
Matches: 3567, Mismatches: 504, Indels: 246
0.83 0.12 0.06
Matches are distributed among these distances:
860 426 0.12
861 2 0.00
862 229 0.06
863 14 0.00
864 8 0.00
865 4 0.00
866 8 0.00
867 13 0.00
868 21 0.01
869 6 0.00
870 22 0.01
871 11 0.00
872 8 0.00
873 273 0.08
874 191 0.05
875 7 0.00
876 121 0.03
877 507 0.14
878 324 0.09
879 3 0.00
880 6 0.00
881 5 0.00
883 2 0.00
884 1 0.00
886 2 0.00
888 10 0.00
889 41 0.01
890 3 0.00
891 1 0.00
892 31 0.01
893 310 0.09
894 118 0.03
898 5 0.00
899 90 0.03
901 95 0.03
902 168 0.05
903 480 0.13
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (874 bp):
CGGGTCCCCTCTACGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAACGGGCGGCGGGCGGGCGGGCACTACG
CCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGTGCACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
GGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGTTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCACCAGAAC
CCCAATGCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
GCACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAATCAGACCAGA
GGGGTGGGATGCGTAAGCTGGGGATCGAT
Found at i:20633055 original size:26 final size:26
Alignment explanation
Indices: 20633019--20633070 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20633009 TGGTCCGAGG
*
20633019 TTAGCCTAGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
*
20633045 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
20633071 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:20633576 original size:893 final size:894
Alignment explanation
Indices: 20631360--20633814 Score: 2888
Period size: 893 Copynumber: 2.8 Consensus size: 894
20631350 GCAAGCTGGA
* * * * * * * * *
20631360 GATCGATCGGGTCCCCCTCTGCTTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCCAATC
1 GATCGACCGGGTCTCCCTCTACGTGCTACCGATCCTACTGCCACAACCCTCGGTCTGGTCCAATC
* ** ***
20631425 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACA-AAACAAGCGGGCGGACGGGCGGG
66 TGAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGA-AGAAACAAGC-GG-GG-CGGGCAAC
* * * * *
20631489 TGGGCACTATGCCAGCTAGAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
127 T----ACTACG-CAGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGT
* * *
20631554 TTAGGCACATCTTTATATTTCT--GTGCACCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
187 TTAGGCACATCTTCATATTTCTACGTG--CCAATGCAATTTTTATGGCTTCTAAATTCATACAAT
* * * ** * *
20631617 GTTCCCTTAAGCCTTCACATCAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTTAGGATTTT
250 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA-TTT
* * *
20631682 TG-AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTCGCCCCAAACTT
314 TGAAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTT
* * * * * *
20631745 -GT-TAGATGGGATCCTTTTATTTTTGT-TGGCATGCACAAAACAATTCAG-CTAAAACTCGAAG
378 GGTGAACAT--GATCCTTGTATTTTT-TCTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAG
* * *
20631806 TTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
440 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGC
* * * * * **
20631871 AGCAAACCTGTAAAATCTCAACTGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGGTGAGGGAT
505 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTCATGAGGGAT
* * * * ** *
20631936 AGGGGGCCAATTTAGGGGCCA-AGTACCAGCACCCATTGCACATCATGAGCGCACAC-CCCCCCG
570 AGAGGGCCAATATAAGGG--ATAGTACCAACACCCATCACACATCATG-GC-CACACACCCCCTG
* * * * * **
20631999 GCCCCCCCGATCACCAAAACCCCAATGTCGTC-GGTCAGGTTCTCCGGCGATGCTCCGGCGGTGG
631 GCCCCCCCGATCACCGAAACCCCAATG-CGGCTGGTCAGGTTCTCCGACGATACTCTGGCAATGG
* * * * * * *
20632063 TGCCCTGACGAAAAAAAATGCGACACTAGCACATGCCTGAGCCCAGCGTGTACTGTTGCAA-CC-
695 TGCCCTGACGAAGAAAAATGCGGCACCAGTACATGCCTGAGCCCAGCATGTTCTGTCGCAACCCT
* *
20632126 C--TC-GGTCC--GG-T--CC-------G--------AT-CTTAGACTGGGAATGAACTCTGTAT
760 CGGTCTGGTCCGAGGTTAGCCTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTAT
* * * * *
20632167 GCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGATTAATCAGCCAGAGGGGCGGGATGCGTAAG
825 GCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGATCAATCAGCCAAAGGGGCAGGATGCGTAAC
***
20632232 CTGGG
890 CCAAG
* * * **
20632237 GATCGATCGGGTCTCCCTCTACGTGCTACCGATCCTACTGCCGCAACCCTTGGTCTGGTCTGATC
1 GATCGACCGGGTCTCCCTCTACGTGCTACCGATCCTACTGCCACAACCCTCGGTCTGGTCCAATC
* * * * *
20632302 TGAGACTGGGAATGAACTGCATATGCCTAAGCCACCCGACGAAACGAGCGGGTGGGCGGGCAAGT
66 TGAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGAAGAAACAAGC--G-GGGCGGGCAACT
* * * * *
20632367 ACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGG
128 ACTACG-CAGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGG
* *
20632432 CACATCTTCATATTTCTACGTGCCAATGCAATTTTTATGGCTTGTAAATTCATAGAATGGTCCCT
192 CACATCTTCATATTTCTACGTGCCAATGCAATTTTTATGGCTTCTAAATTCATACAATGGTCCCT
* * * *
20632497 TAAGCCTTCACTTGAAGTTTCATGGCCAGACGACTCATTTTTTATTTTTCATGATTTTGGAAACT
257 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTGAAAACT
*
20632562 TTTTACGATTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTGAACAT
322 TTTTACGATTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTGAACAT
*
20632627 GATCCTTGTATTTTTTCTGGCATGCATAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTT
387 GATCCTTGTATTTTTTCTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTT
*
20632692 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATA
452 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGCAAACCTATA
* *
20632757 AAATCTCAAATGCTCTTTAAGGGGGTCTTAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATA
517 AAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTCATGAGGGATAGAGGGCCAATA
* * * *
20632822 TAAGGGCCA-AGTGCCAGCACCCATCGCACATCATGAGCACACACTCCTTCCCTGG-CCCCCCGA
582 TAAGGG--ATAGTACCAACACCCATCACACATCATG-GC-CACACACC--CCCTGGCCCCCCCGA
** * *
20632885 TCGTCGAAACCCCATTGCCG-TCGGTCAGGTTCTCCGACGATACTCTGGCAATGGTGCCCTGACG
641 TCACCGAAACCCCAATGCGGCT-GGTCAGGTTCTCCGACGATACTCTGGCAATGGTGCCCTGACG
20632949 AAGAAAAATGCGGCACCAGTACATGCCTGAGCCCAGCATGTTCTGTCGCAACCCTCGGTCTGGTC
705 AAGAAAAATGCGGCACCAGTACATGCCTGAGCCCAGCATGTTCTGTCGCAACCCTCGGTCTGGTC
20633014 CGAGGTTAGCCTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
770 CGAGGTTAGCCTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
* * * *
20633079 ACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GACCAAAGGGGTAGGATGCGTAACCCAAG
835 ACCCACAAAACGAGCGTGCGGGCGATCAATCAG-CCAAAGGGGCAGGATGCGTAACCCAAG
* **
20633139 GATCGGCCGGGTC-CCCTTCTGTGTGCTACCGATCCTACTGCCACAACCCTCGGT-TCGGTCCAA
1 GATCGACCGGGTCTCCC-TCTACGTGCTACCGATCCTACTGCCACAACCCTCGGTCT-GGTCCAA
* * * *
20633202 TGTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGAAGAAACAAGC-GGGCGGGC-ACTA
64 TCTGAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGAAGAAACAAGCGGGGCGGGCAACTA
* *
20633265 C-AC-CAGCCAGAGAAACGGGATGCGCAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTAGGTA
129 CTACGCAGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCA
* ** *
20633328 CATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGT-CCTTA
194 CATCTTCATATTTCTACGTGCCAATGCAATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTA
* * * *
20633392 AGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTATGATTTTTAAAACTTT
259 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTGAAAACTTT
* * **
20633457 TTGCGGTTGGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT-AGACATG
324 TTACGATTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTGA-ACATG
* *
20633521 ATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
388 ATCCTTGTATTTTT-TCTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTT
* *
20633585 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTA
452 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGCAAACCTATA
* *
20633650 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGAGGGCCAATA
517 AAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTCATGAGGGATAGAGGGCCAATA
* *
20633715 TAAGGGATAGTACCAACACCCATCACACATCATGTCCGCACACCCCCTGGCCCCCCCGATCACCG
582 TAAGGGATAGTACCAACACCCATCACACATCATGGCCACACACCCCCTGGCCCCCCCGATCACCG
*
20633780 GAACCCCAATGCGGCTGGTCAGGTTCTCCGACGAT
647 AAACCCCAATGCGGCTGGTCAGGTTCTCCGACGAT
20633815 GCTTGTATTT
Statistics
Matches: 1367, Mismatches: 161, Indels: 88
0.85 0.10 0.05
Matches are distributed among these distances:
872 6 0.00
873 249 0.18
874 185 0.14
875 9 0.01
876 102 0.07
877 110 0.08
878 5 0.00
879 1 0.00
880 2 0.00
881 5 0.00
883 2 0.00
884 1 0.00
886 2 0.00
888 6 0.00
889 42 0.03
890 7 0.01
891 2 0.00
892 24 0.02
893 308 0.23
894 107 0.08
896 2 0.00
897 4 0.00
898 8 0.01
901 7 0.01
902 171 0.13
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (894 bp):
GATCGACCGGGTCTCCCTCTACGTGCTACCGATCCTACTGCCACAACCCTCGGTCTGGTCCAATC
TGAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGAAGAAACAAGCGGGGCGGGCAACTACT
ACGCAGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTACGTGCCAATGCAATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTGAAAACTTTTT
ACGATTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTGAACATGATC
CTTGTATTTTTTCTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGCAAACCTATAAAAT
CTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTCATGAGGGATAGAGGGCCAATATAAG
GGATAGTACCAACACCCATCACACATCATGGCCACACACCCCCTGGCCCCCCCGATCACCGAAAC
CCCAATGCGGCTGGTCAGGTTCTCCGACGATACTCTGGCAATGGTGCCCTGACGAAGAAAAATGC
GGCACCAGTACATGCCTGAGCCCAGCATGTTCTGTCGCAACCCTCGGTCTGGTCCGAGGTTAGCC
TAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAC
GAGCGTGCGGGCGATCAATCAGCCAAAGGGGCAGGATGCGTAACCCAAG
Found at i:20634236 original size:26 final size:26
Alignment explanation
Indices: 20634197--20634246 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20634187 CCGATCCGAT
20634197 CTTAGACTCAGAATGAACACCGTAAG
1 CTTAGACTCAGAATGAACACCGTAAG
*
20634223 CTTAGACT-AGGAATGAACTCCGTA
1 CTTAGACTCA-GAATGAACACCGTA
20634247 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (26 bp):
CTTAGACTCAGAATGAACACCGTAAG
Found at i:20635120 original size:26 final size:26
Alignment explanation
Indices: 20635091--20635143 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20635081 CCGGTCCCAT
* *
20635091 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20635117 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20635143 C
1 C
20635144 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:20635648 original size:910 final size:886
Alignment explanation
Indices: 20633818--20636331 Score: 3030
Period size: 910 Copynumber: 2.8 Consensus size: 886
20633808 CGACGATGCT
*
20633818 TGTATTTTGGTTGGCATGCATAAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGAC
1 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
20633882 CATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
66 CATTTGAAAAAAATATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
20633947 CAAATGCCCTTTAAGAGGGAGTGAGTT-TTCGAGGTTTGATGAGGGACAAGGGGCCAATATAAGG
131 CAAATGCTCTTTAAGAGGGTGTGAGTTCTT-GAGGTTTGATGAGGGA-TAGGGGCCAATATAAGG
* * *
20634011 GCCAAGTACCAGCACCCAATGCACATCATGTGCACACACCCCCCGGCCCCCCATCGCCAGAACCC
194 GCCAAGTACCAGCACCC-ATGCACATCATGTGCGCACACCCCCCGGCCCCCGATCGCTAGAACCC
** ** * *
20634076 CAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCAG
258 CAAT---GCC-GTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGG
* * *
20634141 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTC
319 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
20634206 AGAATGAACACCGTAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
384 GGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
** ** *
20634271 GTGTGCGGGTGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCAGCCAGGTCCCCCT
449 GTGTGCGGGCACTCAGCCAGCCAGAGGGAAGGGATACGCAAGCCGGGGATCAGCCAGGTCCCCCT
* * * * * *
20634336 CTTCGTGCTGTCGATCTTGCTGCCACAACCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTC
514 CATCGTGCTATCGATCCTACTGCCACAACCTCGATCTGATCTAATCTTAGACTAGGAATGAACTC
20634401 CGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGG
579 CGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGG
* * *
20634466 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACTTGC
644 ATGCGCAAGCCCTGGACCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACTTGC
* *
20634531 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
709 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
20634596 GGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTAAAACTTTTTACGGTTTGAGATTTTTTAA
774 GGCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAACTTTTTACGGTTAGAGATTTTTTAA
* * ** * * *
20634661 AATTTTTTCAGAAGGTGTTTTGGCCCTAAACTTCTTAGACGTGATCCT
839 AATTTCTTCAGAAGGAGTTTTCACCCCAAACTTCGTAGACGTGATCCC
* *
20634709 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTCGTCAC
1 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
20634774 CATTAT-AAAAAAACTATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
66 CATT-TGAAAAAAA-TATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
20634838 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGACGAGGGATAGGTGGCCAATATAAG
129 CTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG-GGCCAATATAAG
* *
20634903 GGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCAGATCGCTAGAAC
193 GGCCAAGTACCAGCACCCAT-GCACATCATGTGCGCACACCCCCCGGCCCCC-GATCGCTAGAAC
*
20634968 CCCAATGTAACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGT
256 CCCAATG---CC-GTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGC
* * * * *
20635033 GGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCGGTCCCATCTTAGAT
317 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
20635098 TGGGAATGAACTCCGTATGCTTAGACT-GGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
382 TGGGAATGAACTCCGTATGCTTAGACTAGG-AATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * *
20635162 TGAGTGTGCGGGCACTCAGCCGGCCAGAGGGAAGGGATACGCAAGCCGGGGATCGGCCGGGTCCC
446 CGAGTGTGCGGGCACTCAGCCAGCCAGAGGGAAGGGATACGCAAGCCGGGGATCAGCCAGGTCCC
* * * * *
20635227 CCTCCAT-GTGCTATCGATCCTACTGTCGCAACCTTGGGTTCT-ATC-AATCTTAGACTCGGAAT
511 CCT-CATCGTGCTATCGATCCTACTGCCACAACC-T-CGATCTGATCTAATCTTAGACTAGGAAT
* **
20635289 GAACTCTGTATGCCTAAGCCAACTGACGAAATGAGTGGGCGGGCGGGTGAGCGGGCGGGCAGGCA
573 GAACTCCGTATGCCTAAGCCAAC---C--AATGA-------AAC----GAGCGGGCGGGCAGGCA
* * *
20635354 CTACGTTGGCTAGAGAGAGGGGATGCGCAAGCCCTGGACCGATAGGGTGGTAGGTGGGTTTAGGA
622 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCCTGGACCGATAGGGTGGTAGGTGGGTTTAGGA
*
20635419 ACATCTTCATATTTCTA-TGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGCTCCCT
687 ACATCTTCATATTTCTACT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCT
*
20635483 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACT
751 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAACT
* *
20635548 TTTTACGGTTCAG-GATTTTTTAAAATTTCTTCAGAAGGAGTTTTCACCCCAAACTTGGTAGATG
816 TTTTACGGTT-AGAGATTTTTTAAAATTTCTTCAGAAGGAGTTTTCACCCCAAACTTCGTAGACG
20635612 TGATCCC
880 TGATCCC
* *
20635619 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGAC
1 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
20635684 CATTTGAAAAAAATGA-CCCCATTTCAGACACTTTAACT-GCTACTGGCAGCAAACCTATAAAAT
66 CATTTGAAAAAAAT-ATCCCCATTTCAGACACTTTAA-TGGCTACTGGCAGCAAACCTGTAAAAT
* * *
20635747 CTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGTGATATGGGGACAATATAAG
129 CTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAG
* * * *
20635812 GGCCAAGTACCAGCACCCATTGCACACCATGTTCGCACACCCCCCGCCCCCCCGATCG-TCGGAA
193 GGCCAAGTACCAGCACCCA-TGCACATCATGTGCGCACACCCCCCG-GCCCCCGATCGCT-AGAA
* * * * *
20635876 CCCCAATGCCGTC-GG---TCAGGT--T-CTCCAACGA---TGCTCTGGCGAAGAAAAATGCGGC
255 CCCCAATGCCGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGC
* *
20635931 ACCAGCACATGCCCGAGCCCAGCATATGCTGCTGCAA-CC-C--T-C-G---G----T---CT--
320 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * *
20635978 G---G--CT-CG-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
385 GAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* ** * * * * *
20636035 CGTGCGGGGTGCTCAGCCAGCCAGAGGGGCA-GGTTGCGCAAGCCGAGGATC-GACCGGGTCCCC
450 TGTGC-GGGCACTCAGCCAGCCAGA-GGGAAGGGATACGCAAGCCGGGGATCAG-CCAGGTCCCC
* ** * * ** * ** * * *
20636098 CT-TTACGTGCTGCCGATCCTGCTACCTTAACCCTTGGCCTGGT-TCAATCTTAGATTGGGAATG
512 CTCAT-CGTGCTATCGATCCTACTGCCACAA-CCTCGATCTGATCT-AATCTTAGACTAGGAATG
* * *
20636161 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGGCGGGCACTACGTCGGCCAGAGAG
574 AACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAG
* * * * *
20636226 ACGGGGTGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-
639 ACGGGATGCGCAAGCCCTGGACCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTA
*
20636289 CGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATG
704 C-T-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
20636332 GACCCTGGGG
Statistics
Matches: 1422, Mismatches: 150, Indels: 138
0.83 0.09 0.08
Matches are distributed among these distances:
854 1 0.00
855 125 0.09
859 1 0.00
866 4 0.00
868 2 0.00
869 51 0.04
870 68 0.05
871 45 0.03
872 2 0.00
874 1 0.00
877 1 0.00
879 1 0.00
882 1 0.00
889 1 0.00
890 1 0.00
891 36 0.03
892 43 0.03
893 151 0.11
894 299 0.21
895 57 0.04
896 4 0.00
897 1 0.00
898 8 0.01
899 6 0.00
901 5 0.00
904 2 0.00
905 3 0.00
906 3 0.00
908 1 0.00
909 159 0.11
910 338 0.24
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (886 bp):
TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAATATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATGCACATCATGTGCGCACACCCCCCGGCCCCCGATCGCTAGAACCCCAA
TGCCGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCG
GGCACTCAGCCAGCCAGAGGGAAGGGATACGCAAGCCGGGGATCAGCCAGGTCCCCCTCATCGTG
CTATCGATCCTACTGCCACAACCTCGATCTGATCTAATCTTAGACTAGGAATGAACTCCGTATGC
CTAAGCCAACCAATGAAACGAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
AGCCCTGGACCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACTTGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCATTTTCTATTTTTCATAATTTTCAAAACTTTTTACGGTTAGAGATTTTTTAAAATTTCT
TCAGAAGGAGTTTTCACCCCAAACTTCGTAGACGTGATCCC
Found at i:20637345 original size:26 final size:26
Alignment explanation
Indices: 20637295--20637345 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20637285 TGGTCTGATC
* * *
20637295 TTAGACTGGGAATGAACTTCGTATGG
1 TTAGACTGGGAATAAACTCCATATGG
20637321 TTAGACTGGGAATAAACTCCATATG
1 TTAGACTGGGAATAAACTCCATATG
20637346 CCTTAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCATATGG
Found at i:20638224 original size:26 final size:26
Alignment explanation
Indices: 20638187--20638237 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20638177 GGTCCGATCA
20638187 TAGACTGCGAATGAACTCCATATGCT
1 TAGACTGCGAATGAACTCCATATGCT
*
20638213 TAGACTAG-GAATGAACTCCGTATGC
1 TAGACT-GCGAATGAACTCCATATGC
20638238 CTAAGCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (26 bp):
TAGACTGCGAATGAACTCCATATGCT
Found at i:20639115 original size:26 final size:26
Alignment explanation
Indices: 20639086--20639138 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20639076 CCAATCCGAT
20639086 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
20639112 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20639138 C
1 C
20639139 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:20640016 original size:26 final size:26
Alignment explanation
Indices: 20639980--20640032 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20639970 CTGGTCGAAT
*
20639980 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
20640006 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
20640032 C
1 C
20640033 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:20640938 original size:900 final size:899
Alignment explanation
Indices: 20636341--20642695 Score: 8209
Period size: 896 Copynumber: 7.1 Consensus size: 899
20636331 GGACCCTGGG
* * * * * *
20636341 GAAGAAAAATACGGCACCAGCACATGCTCAAGCGCAGCATGTGCTGTCGCAACCCTCGGTCCAGT
1 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAGT
* * *
20636406 CTGATCTTGGACTGGGAATGAACTACGTATGCTTAGAC-AGGGATTGAACTCCGTATGCCTAAGT
66 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGT
* * * * * * *
20636470 CAACCCATGAAACGAGCGTGCGGGCACTCAGCCTGCCAGAGAGACGGGATGCGTAAG-C-GAGAT
130 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** *** *
20636533 --G-C---TCCCCCTCTACGTGCTACTGATCCTGC-AGTCGCAACCCTCAGTCCAATCCGATCTT
195 CGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTA-CCGTAACCCTTGGTCTGGTCTGATCTT
* * * *
20636591 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCG-GGCGGGCCGGCA
259 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAGA-CGGGCGCGGCGGGCGGGCA
*
20636655 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGC
323 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
20636720 ACATCTTCATATTTCTACGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
388 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
20636785 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATGTTTCATGATTTTTGAAACTT
453 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* *
20636850 TTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
518 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
20636915 ATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
583 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
* * * *
20636980 GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCAACTGGCAGTAAACCTGTAA
648 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
20637045 AATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATTAGGGATAGGGGGCCAACAT
713 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
20637110 AAGGTCCAAGTACCAGCACCCATCACACATCATGTGTGCACA----CC-G---CCCCAATCGTCG
778 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCG
* * * *
20637167 AAACCCCAATG-CGACCGGTCAGGTTCTCCGGCAATGCTCCGGCGATGGTGCCCCGAC
843 GAACCCCAATGCCG-CCAGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGAC
* * * * * ** **
20637224 GAAGAAAAATGCGACACCAGCACTTGCCCAAGCCTAGCATGTGCAGCCGTAACCCTCGGTCTGGT
1 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAGT
* * * * * *
20637289 CTGATCTTAGACTGGGAATGAACTTCGTATGGTTAGACTGGGAATAAACTCCATATGCCTTAGTC
66 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * * * * * *
20637354 AACCCACGAAATGAGCATGCGGGCGTTCAGCTGGCCAGAGGGGCGAGATGTGCAAGTCAGGGATC
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* ** * * * *
20637419 GATCGGGTCCCCCTCTGTGTACTGCCGATCCTGCTACCGTAACCCTTCGTCTGGTCTGATATTAG
196 GGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGTAACCCTTGGTCTGGTCTGATCTTAG
** * *
20637484 ACTGGGTCTAAACTCCGTATGCCTAAGCCAACCGATGAAATGA---GCG-GGCGGGCGGGCACTA
261 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAGACGGGCGCGGCGGGCGGGCACTA
* * * *
20637545 CGTCGACTAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
326 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
20637610 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
391 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
20637675 CCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
456 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * * * *
20637740 GGGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACATGGTACACATGATC
521 GCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
20637805 CTTGTATTTTTGTTGGCATGCACAAAAAAATTGAGCTAAAAACTC-AAGTGTACAAGATTTTGTG
586 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
* * *
20637869 ACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAACGGCTACTGGCAACAAACCTGTAAAAT
651 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
20637934 CTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTCTGATGGGGGATAGGGGGCCAATATAAG
716 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
20637999 GACCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-G--CCCCCGATCG-CTGGA
781 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGA
* * *
20638060 ACCCCAATG-CGACCGGTTAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGAC
845 ACCCCAATGCCG-CCAGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGAC
* * * * *
20638115 GAAGAAAAATGCGACGCCAGAACATGCCCGAGCCCAGCAAGTGCTG-CTATAACCCTCGGTCCGG
1 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-ACAACCCTCGGTCCAG
* * * * *
20638179 TCCGATCATAGACTGCGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
65 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
20638244 CAATCAACGAAACGAGCGTACAGGTGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCTC-GGGA
130 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGA
* * * * * * * *
20638308 TCGGCCGGATGCCCCTCTACGGGCTGCCAATCCTGCTACCGTAACCCTTGGTTTGGTTTGATCTT
194 TCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGTAACCCTTGGTCTGGTCTGATCTT
* *
20638373 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCAGGCGGGCGG
259 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAG-ACGGGC--GC-GGCGGGCGG
* * *
20638438 GCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTA
320 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
20638503 GGCACATCTTCATATTTCTGCATGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
385 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
20638568 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAA
450 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
20638633 CTTTTTGTGGCTCGGGGTTTTTTAAAATTTTTTCGAAAGGAGTTTTAGG-CCCAAACTTGGTAGA
515 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT-GGCCCCAAACTTGGTAGA
* **
20638697 CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGGAAAAAACTCAAAGTGTACAAGA
579 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
* *
20638762 TTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGAGAC--TAATGGCTACTGGCAGCAAACCT
644 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* **
20638825 ATAAAATCTCAAATTATCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
709 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
20638890 ATATAAGGGCCAAGTACCAGCACCCATCGCAGATGATGTGCGCACACCCCCCAGCCCCCCCAATC
774 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * *
20638955 GTCGGAACCCCAATGCCGTCAGTCAAGTTCTCCGGCGATGCTCCAACGATGGTGCCCCGAC
839 GTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGAC
* * *
20639016 GAAGAAAAATGCGACAGCAGCACATGCTCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAAT
1 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAGT
* * *
20639081 CCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
66 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * *
20639146 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGTGATGCACAAGCCGGGGATC
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * ** * * **
20639211 GGTCAGGACCCCCAATGA-ATGCTACCGATCCTGCTACTGTAACCCTCTATTC-GGTCTGATCTT
196 GGTCGGGTCCCCCTCT-ACGTGCTACCGATCCTGCTACCGTAACCCT-TGGTCTGGTCTGATCTT
*
20639274 AGACTGGGAATGAACTCCGTATGCGTAAGCCAACCGATGAAACA-A---GCG-GGCGGGCGGGCA
259 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA-AGACGGGCGCGGCGGGCGGGCA
*
20639334 CTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
323 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
**
20639399 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
388 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
20639464 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTGGAAACTA
453 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * * *
20639529 TTTACGGTTCGGGATTTTTTAAAGTTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTG
518 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
** * * * *
20639594 ATCCTTCCATTTTTCTTGGCATGCA-TAAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTGT
583 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
* * *
20639658 GTGACCATTTGAAAGAAGTGTCCCCTATTTCAGACACTTTAATGGCCACTGGCAGC-AACCTATA
648 GTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
20639722 AAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGGTG-CAATA
712 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
20639786 TAAGGGCCAAATACCAGCACACATTGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGT
777 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGT
* * *
20639851 CGAAACCCCAATGTCGCCAGTCAGGTTCTCCGACGATGCTCC-GACGATGGTGCCCCGAC
841 CGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCAG-CGATGGTGCCCCGAC
* * * * * * * * **
20639910 GAAGAGAAATACGTCACCAGCACATGCCCAAGCCTAGCATGTGCTATCGCAACCCTCGATCTGGT
1 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAGT
* * *
20639975 C-GAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGT
66 CTG-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * ** * * * * *
20640039 TAACCCACGAAACAAGCTTATGGGTGCTCAACCGACCAGAGGGGCGAGATGGGCAAGCCGGGGAT
130 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** *
20640104 CGGTCGGGTGCCCCTCTACGTGCTACCGATCCTACCACCACAACCCTTGGTCTGGTCTGATCTTG
195 CGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGTAACCCTTGGTCTGGTCTGATCTTA
* *
20640169 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCTGGCGGGCGGG
260 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAGA-CGGGC--GC-GGCGGGCGGG
* * *
20640234 CACTACGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGAATCGATATGGTGGTAGGTGGGTTTAG
321 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
20640299 GCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
386 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
20640364 TTAAGCCTTCACCTGAAGTTTCATAGCAACACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
451 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
20640429 TTTTTGCAGTTTGAGATTTTTTAAAATTTTTT-GTAAGGAGTTTTGGACCCAAACTTGGAAGACG
516 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
20640493 TGATCCTTCTATTTTTGTTGGCATGCA-AAAAAAATTTAGC-CAAAACTCAAAGTGTACAAGATT
581 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
* *
20640556 TTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTCATGGCTACTGGCAGCAAACCTGT
646 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * ** * *
20640621 AAAATCTCAAATGCTCTTGAAGGGCGTGTGAGTTCTTGAGGTTTGATGAGGGATACTGGGTCGAT
711 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * ** *
20640686 ATAAGGGCCAAGTACTAGCACCCATCACACATTATGTGCGCACACCCCTTGGCCCCCCCGATCAT
776 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * * *
20640751 CGGAACACCAATGCCGCCAGCCAGGTTCTCCGGTGATGC-CACAGTGATGGTGCCCCGAC
841 CGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTC-CAGCGATGGTGCCCCGAC
* * * * *
20640810 AAAGAAAAATGTGACACCAGCACAAGCCCGAGCCCAGCATGTGCTGGCACAACCCTCTGTCCAGT
1 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAGT
* * *
20640875 CTGATCTTAGATTGGGTATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTC
66 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * ** * *
20640940 ATCCAACAAAACGAGCGTGCGGGCGCTCAGTTGGCCATAGGGGCGGGATGCGCAAGCCGGGGATA
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * ** * *
20641005 GGTCGGATCCCCCTCTGCGTGCTGCTGATCTTGCTACTATAACCCTCGATCTGGTCTGATCTTAG
196 GGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGTAACCCTTGGTCTGGTCTGATCTTAG
* * ** *
20641070 ACT-GGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCTAGC-AGGCGGGCGGGCACT
261 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAGA-CGGGCGCGGCGGGCGGGCACT
* * **
20641133 ACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGAAAC
325 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
**
20641198 ATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
390 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
20641263 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACTATTGTTGAAACTTTT
455 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
20641328 TGCAGTTCGGGATTTTTTAAACTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGCCGTGAT
520 TGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*
20641393 CCTTGTACTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
585 CCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
*
20641457 TGACCATTTG--AAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
649 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
20641520 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTCAATATA
714 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
20641585 AGGGCCAAGTGCCAGCACCCATCGCAAATCATGTGCGCACACCCCCCGGCCCCTCCGATCGTCGG
779 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGG
* * * * * *
20641650 AACCCCAATGTCGTC-GATCAGGTTCTCTGACGATGCTCCGGAGATGGTGCCCCGAC
844 AACCCCAATGCCGCCAG-TCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGAC
* * * * * *
20641706 AAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTTGATCC-G-
1 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAGT
* *
20641769 --G-TCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GAGAATGAACACCGTATGACTAAGT
66 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG-GAATGAACTCCGTATGCCTAAGT
* * * * * *
20641830 CAACCCACGAAATGAACGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATCCGCAAACCGGGGAT
130 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * * ** **
20641895 CGGTCGAGACCCCCTTTGCGTGCTACTGATCCTGCTACCGCAACACTCGGTCCAGTCCAATCTTT
195 CGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGTAACCCTTGGTCTGGTCTGATC-TT
* ** ** * *
20641960 A-ACTGGGAATGAACTCCATATTTCTAAGAAAACCGATGAAACGATCAAGCGG-GCGGGCGGTCG
259 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAGA-C--G-GGCGC-GGCGGGCG
*
20642023 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
319 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
20642088 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTC
384 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* **
20642153 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAA
449 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
20642218 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAAACTTGTTAGA
514 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * * * * *
20642283 CATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGGGTTCAACA
579 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
* *
20642348 TTTTTTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
644 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
20642413 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
709 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
20642478 ATATAAGGTCCAAGTACCAACACCCATTGCACATCATGTGTGCACACCCCCCTCGGCCCCCTCGA
774 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGA
* * * * * * * *
20642543 TCGTCGGATCCCCAATGCGGTCGGTTAGGTTCTCCAGCGATGCTCC-GACGATGGTGCCCTGGC
837 TCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCAG-CGATGGTGCCCCGAC
* * * * * * * *
20642606 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTGCTATCGCAATCCTTGGT-CTGA
1 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAG-
*
20642670 TCCGATCTTAGACTGGGAATGAACTC
65 TCTGATCTTAGACTGGGAATGAACTC
20642696 TGTACGCCTA
Statistics
Matches: 4773, Mismatches: 611, Indels: 154
0.86 0.11 0.03
Matches are distributed among these distances:
883 154 0.03
884 1 0.00
885 4 0.00
886 172 0.04
887 300 0.06
888 1 0.00
890 6 0.00
891 542 0.11
892 100 0.02
893 330 0.07
894 380 0.08
895 245 0.05
896 624 0.13
897 21 0.00
898 314 0.07
899 370 0.08
900 547 0.11
901 416 0.09
902 224 0.05
904 1 0.00
905 21 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
GGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGTAACCCTTGGTCTGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAGACGGGCGCGGCGGGCGGGCACTA
CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
GCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAA
CCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGAC
Found at i:20641800 original size:26 final size:26
Alignment explanation
Indices: 20641771--20641822 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20641761 TTGATCCGGT
* *
20641771 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACACCGTATG
20641797 CTTAGACTGAGAATGAACACCGTATG
1 CTTAGACTGAGAATGAACACCGTATG
20641823 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACACCGTATG
Found at i:20643385 original size:705 final size:705
Alignment explanation
Indices: 20642030--20643400 Score: 2146
Period size: 705 Copynumber: 1.9 Consensus size: 705
20642020 TCGGGCACTA
*
20642030 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
1 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACA
* * *
20642095 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAG
66 TCTTCATATTTCTGCATGCCAACGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAG
20642160 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTT
131 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTT
* * *
20642225 GCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAAACTTGTTAGACATGATC
196 GCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGTAGACATCATC
* * * *
20642290 CTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGGGTTCAACATTTTTTG
261 CTTCTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGGGTACAACATTTTGTG
*
20642355 ACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
326 ACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAAT
*
20642420 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAG
* * * ** * * **
20642485 GTCCAAGTACCAACACCCATTGCACATCATGTGTGCACACCCCCCTCGGCCCCCTCGATCGTCGG
456 GGCCAAGTACCAACACCCATCGCACAACATGTGCACACACCCCCCTCGACCCCCCCGATCACCGG
* * * *
20642550 ATCCCCAATGCGGTCGGTTAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAA
521 AACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAA
* * * *
20642615 TACGGCACCAGCACATGCCCGAGCCAAGCATGTGCTATCGCAATCCTTGGTCTGATCCGATCTTA
586 TACGGCACCAGCACATGCCCGAGCCAAGCATGTGCTATCGCAACCCTCGGTCCGATCCAATCTTA
20642680 GACTGGGAATGAACTCTGTACGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCC
651 GACTGGGAATGAACTCTGTACGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCC
*
20642735 CGCCGGCCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAAC
1 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-AAC
*
20642800 ATCTTCATATTTCTGCATGCCAACGCCATTTTTATGGCTTGTAAATTCATAAAATGGT-CTTTAA
65 ATCTTCATATTTCTGCATGCCAACGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAA
* **
20642864 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT-TATTTTTCATGATTTTTGAAACTTTT
130 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTT
*
20642928 TGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGGTCCC-AAACTTGGTAGACATC
195 TGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGG-CCCAAAACTTGGTAGACATC
* * *
20642992 ATCCTTCTATTTTTTTTGGCATGCACAAAAAAACTT-AGCTAAAAACTCGAAGTGTACAAGATTT
258 ATCCTTCTATTTTTTTTGGCATGCACAAAAAAA-TTCAGCTAAAAAATCGAAGGGTACAACATTT
** *
20643056 TGTGACCATTTGAAAAAAGTGTCCCTGTTTTAGACACTTTAATGGCTACTGGCAGCAAACATGTA
322 TGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACATGTA
* *
20643121 AAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATC
387 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATA
*
20643186 TAAGGGCCAAGTACCAGCACCCATCGCACAACATGTGCACACACCACCCC-CGACCCCCCCGATC
452 TAAGGGCCAAGTACCAACACCCATCGCACAACATGTGCACACACC-CCCCTCGACCCCCCCGATC
* *
20643250 ACCGGAAGCCCAATGCCGCCGGTCAGGTTCTCC-GACGATGCTCCTG-CGATGGTG-CCTCGGTG
516 ACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGATGCTCC-GACGATGGTGCCCT-GGCG
** * * *
20643312 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATT
578 AAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTGCTATCGCAACCCTCGGTCCGATC
20643377 CAATCTTAGACTGGGAATGAACTC
643 CAATCTTAGACTGGGAATGAACTC
20643401 CGTATGCTTA
Statistics
Matches: 606, Mismatches: 52, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
704 62 0.10
705 477 0.79
706 67 0.11
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (705 bp):
CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACA
TCTTCATATTTCTGCATGCCAACGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTT
GCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGGTAGACATCATC
CTTCTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGGGTACAACATTTTGTG
ACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAG
GGCCAAGTACCAACACCCATCGCACAACATGTGCACACACCCCCCTCGACCCCCCCGATCACCGG
AACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAA
TACGGCACCAGCACATGCCCGAGCCAAGCATGTGCTATCGCAACCCTCGGTCCGATCCAATCTTA
GACTGGGAATGAACTCTGTACGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCC
Found at i:20644321 original size:26 final size:26
Alignment explanation
Indices: 20644285--20644337 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20644275 CTAATCTGAT
*
20644285 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATAAACTCCGTATG
20644311 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGATTGGGAATAAACTCCGTATG
20644337 C
1 C
20644338 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATAAACTCCGTATG
Found at i:20645846 original size:882 final size:883
Alignment explanation
Indices: 20642668--20646443 Score: 4787
Period size: 904 Copynumber: 4.2 Consensus size: 883
20642658 TCCTTGGTCT
* * *
20642668 GATCCGATCTTAGACTGGGAATGAACTCTGTACGCCTAAGCCAACCGACGAAACGAGCAGGC--G
1 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
*
20642731 -GGC-C--CGCCGGCCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 CGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
20642792 TAGGTAACATCTTCATATTTCTGCATGCCAACGCCATTTTTATGGCTTGTAAATTCATAAAATGG
131 TAGG-CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
20642857 TCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT-TATTTTTCATGATTTTTGA
195 TCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* *
20642921 AACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGGTCCCAAACTTGGTA
260 AACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAG-TTTTGGCCCCAAACTTGGTA
* * *
20642986 GACATCATCCTTCTATTTTTTTTGGCATGCACAAAAAAACTT-AGCTAAAAACTCGAAGTGTACA
324 GACATCATCCTTGTATTTTTTTTGGCATGCACGAAAAAA-TTCAACTAAAAACTCGAAGTGTACA
** *
20643050 AGATTTTGTGACCATTTGAAAAAAGTGTCCCTGTTTTAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
20643115 CATGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGAGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
20643180 CCAATCTAAGGGCCAAGTACCAGCACCCATCGCACA-ACATGTGCACACACCACCCCCGACCCCC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATA-ATGTGCGCACACCACCCCCGGCCCCC
* * *
20643244 CCGATCACCGGAAGCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCTG-CGATGGTGCCTC
582 CCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GACGATGGTGCCCC
* * * *
20643308 GGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCC
646 GGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTAGGTCC
* * * *
20643373 GATTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATAGGCCTAA
711 -AGTC-A-CCTAGA-T-GG-A-GAAC-CC----GCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
20643438 GTCAACCAACGAAATGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCGGGG
764 GTCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCACAAGCCGGGG
* * * * * * *
20643503 ATCAATCGTGTCCCCCACTGCGTGCTGCCGATGCTATTGCCGCAACCCTCAGTCC
829 ATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCC
* * * *
20643558 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCAGGCGAG
1 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GC--G
* * * *
20643623 CGGACGGGCATGCACTACGCCGGCCAGAGAGACGGGATGCGTAAG-CGTGCATCGACAGGGTGGT
60 -GG-CGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
20643687 AGGTGGGTTTGGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTGTGGTTTGTAAATTCA
122 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
20643752 TACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCAT
187 TACAATGGTCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* *
20643817 GATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
251 GATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * * *
20643882 ACTTGGTAGACGTCATCCTTGTATTTTTTTTGGCTTGCA-GCAAAAAACTCAACTACAAACTCGA
316 ACTTGGTAGACATCATCCTTGTATTTTTTTTGGCATGCACG-AAAAAATTCAACTAAAAACTCGA
20643946 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
380 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
20644011 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
445 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
20644076 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCACACCACCCCC
510 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCGCACACCACCCCC
* * *
20644141 GGCCCCCCCGATCACCAGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGTTGCTCCGACGATGG
575 GGCCCCCCCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * * *
20644206 TGCCTCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAGGCCAGCATGTGCTGTCACAACCCT
640 TGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
* * * * * *
20644271 TGGTCTAATCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGAATAAACTCCGTAT
705 AGGTCCAGTC--A-CCTAGA-T-GG-A-GAAC-CC----GCTTAGACTGGGAATGAACTCCGTAT
* * ** *
20644336 GCCTAAGTCAACCAACAAAACGAGCGTACGGGCTTTCAGCCGGCCAGAGGGGA-TGGATGCACAA
758 GCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGACGGGATGCACAA
* ** *
20644400 GCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTACAACCCTCTGTCC
822 GCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCC
* * * *
20644462 GATCTGATCTTAGACTGGGAATGAACTTCGTATGCCCAAGCCAACTGACGAAACGAGCGGGCGGG
1 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * *
20644527 CGGCACTACGTCGGCCAGAGAGACAGGATGCGCAGGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 CGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
20644592 TAGGCACATCCTTCATATATTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATG
131 TAGGCACAT-CTTCATAT-TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
20644657 GTCCCTTAAGCCTTCACGTGAAGTTACATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTT
194 GT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * **
20644722 GAAACATTTTGCAGTTTGGGATTTTTTAAAATGTTTTT-GGAAGGTTTTTTGGCCCCAAACTTGG
258 GAAACTTTTTGCGGTTTGGGATTTTTTAAAAT-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
20644786 TAGACATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGTAGTGTAC
322 TAGACATCATCCTTGTATTTTTTTTGGCATGCACGAAAAAATTCAACTAAAAACTCGAAGTGTAC
*
20644850 AAGATTTTGTGACCA-TTGAAACAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
20644914 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGTGTTCTCAAGGTTTGATGAGGGATAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
20644979 GCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATAATGTGCGCACA-C-CCCCCGGCCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCGCACACCACCCCCGGCCCCC
* * * * * * *
20645042 TCGATCCCCAGAACCCCAATGCCGTCAGTTAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCG
582 CCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* *
20645107 GTGAAGAAAAATGCGACACCAGCACATGCCCGTGCCCAGCATGTGCTGCCACAACCCTAGGTCCA
647 GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTAGGTCCA
* * * *
20645172 GTC-CCCA-A-GG-GAA-CC-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAA
712 GTCACCTAGATGGAGAACCCGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAA
** * * * * * * *
20645231 ACGAAAGTGTGGGCGCTCAGTCGGCCCGAGGTACGGGATGCGCAAGCTGGGGATCGACCGGGTTC
777 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCACAAGCCGGGGATCGACCGGGTCC
* * *
20645296 CCCTCTGTGTGCTGCCGATCCTGCGGCCCCAACCCTC-GATCC
842 CCCTCTGTGTGCTGCCGATCCTACTGCCGCAACCCTCAG-TCC
* * * * *
20645338 GGTCCCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACAAAACGAGCGGGCGGG
1 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGG
*
20645403 CGGGTGGCGGGCACTACCCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
62 C--G-GGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
20645468 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTCTAAATTCGT
123 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* ** * * * *
20645533 ACAATTGTCCTTAAGAATTCACGTTAAGTTTCTTGGCAAGGCAACTCGTTTTCTATTTTTCATGA
188 ACAATGGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* ** * *
20645598 TTTTTGAAACCTTTTGCGGTTCAGGATTTTTTTAAATTTTTTCAGAAGGAG-TTTGGGCCCAAAC
253 TTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* *
20645662 TTGGTAGACATGATCCTTTTATTTTTTTTGGCATGCACGAAAAAATTCAACTAAAAACTCGAAGT
318 TTGGTAGACATCATCCTTGTATTTTTTTTGGCATGCACGAAAAAATTCAACTAAAAACTCGAAGT
* * *
20645727 GTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTAATGGCA
383 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
20645792 GCAAACCTCTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATA
448 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
20645857 GTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACA-C-CCCCCGGC
513 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCGCACACCACCCCCGGC
* * ** * * * *
20645920 CCCCCAGATCGCCAGAACCCCAATATCGTCGGTCAAGTTCTCCGGCGATACTCCGACGATGGTGC
578 CCCCCCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
*** * * * * *
20645985 CCCGACAAAGAAAAATGTGGCACCAGCACATGCCTGAGGCCAGCATGTGCTACCGCAACCCTCA-
643 CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT-AG
* * * *
20646049 GTCCTGTCCAATCTTAGACTGAGAATGAACTCTGTGTGCTTAGACTGGGAATGAACTCTGTATGC
707 GTCCAGT-C-A-CCTAGA-TG-G-A-GAAC-C----CGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
20646114 CTAAGTCAACCCACGGAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCTGGATGCACAAGCC
760 CTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCACAAGCC
* * * * *
20646179 GGGGATC-AGCCGAGTTCCCCTTCTGTGTGCTGCTC-ATCCTGCTGCCGCAACCCTCATTTC
825 GGGGATCGA-CCG-GGTCCCCCTCTGTGTGCTGC-CGATCCTACTGCCGCAACCCTCAGTCC
** * **
20646239 GATATGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTAACGAAACGAGCGGGC-GG
1 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* *
20646303 C--CACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGTA-GTGGGTT
66 CGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
20646365 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTACATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
20646430 CCCTTAAGCCTTCA
196 -CCTTAAGCCTTCA
20646444 TGTGCGCACA
Statistics
Matches: 2529, Mismatches: 291, Indels: 132
0.86 0.10 0.04
Matches are distributed among these distances:
875 4 0.00
876 168 0.07
880 59 0.02
881 131 0.05
882 313 0.12
883 16 0.01
884 69 0.03
886 4 0.00
887 1 0.00
889 70 0.03
890 113 0.04
892 1 0.00
893 7 0.00
894 128 0.05
895 32 0.01
896 196 0.08
897 59 0.02
898 184 0.07
899 8 0.00
900 89 0.04
901 84 0.03
902 4 0.00
903 62 0.02
904 638 0.25
905 89 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (883 bp):
GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
CGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
ACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CATCATCCTTGTATTTTTTTTGGCATGCACGAAAAAATTCAACTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCGCACACCACCCCCGGCCCCCCCGA
TCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTAGGTCCAGTCA
CCTAGATGGAGAACCCGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGA
GCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCT
CTGTGTGCTGCCGATCCTACTGCCGCAACCCTCAGTCC
Found at i:20646636 original size:26 final size:26
Alignment explanation
Indices: 20646607--20646658 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20646597 CGGTCTGATC
*
20646607 TTAGACTAGGAATGAACTCCGTACGA
1 TTAGACTAGGAATGAACTCCATACGA
*
20646633 TTAGACTGGGAATGAACTCCATACGA
1 TTAGACTAGGAATGAACTCCATACGA
20646659 GCGTGCGGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATACGA
Found at i:20648382 original size:26 final size:26
Alignment explanation
Indices: 20648342--20648394 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20648332 CCAGTCCGAT
*
20648342 CTTAGACTGGTAATGAACTTCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
20648368 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGTAATGAACTCCGTATG
20648394 C
1 C
20648395 CTAAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:20649284 original size:26 final size:26
Alignment explanation
Indices: 20649248--20649300 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20649238 CTGATCCGAT
20649248 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20649274 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20649300 C
1 C
20649301 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20650052 original size:26 final size:26
Alignment explanation
Indices: 20650016--20650067 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20650006 CGATCTGATT
*
20650016 TTAGACTGGGAATGAACTCCCTATGC
1 TTAGACCGGGAATGAACTCCCTATGC
*
20650042 TTAGACCGGGAATGAACTCCGTATGC
1 TTAGACCGGGAATGAACTCCCTATGC
20650068 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACCGGGAATGAACTCCCTATGC
Found at i:20653068 original size:899 final size:895
Alignment explanation
Indices: 20649886--20657960 Score: 9961
Period size: 899 Copynumber: 9.0 Consensus size: 895
20649876 CCTCGATCAT
* ** * * *
20649886 CGGAACCCCAATGCCACCGGTCAGGTTCTCTGATGATGCTCCAGTGATGGTGCCCC-AGGGAAGA
1 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGA
* * * * * * * *
20649950 AAAATACGGCACCAGCACATGTCCGAACCCAGTATGTGCTCCTGCAACCCTTGGTCCGATCTGAT
65 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCC-TCGTCCGGTCCGAT
* * *
20650015 TTTAGACTGGGAATGAACTCCCTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCC
129 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * **
20650080 ACGAAACGAGCGTGAGGGCGCTCAGCCAGCCAGAGAGGG-GGGATGCACAAGCCGGAGATC-AAT
194 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG-GGGCGGGATGCGCAAGCCGG-GATCGGCT
* * * * **
20650143 CGGGTCCCCCTCTACGTGCTGTCAATCCTCCTACTGCAA-CCTTTGTTTCGGT-TCGATCTTAGA
257 -GGGTCCCCCTCTACGTGCT-CCGATCCTGCTACCGCAACCCTCAGTTT-GGTCT-GATCTTAGA
* * * ** * * *
20650206 CTAGGAATGAACTACGTATGCTTGAGCCAATTGAC-AAA--A-TGAGCGGGCGGGCGGGCATTAC
318 CTAGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCACTAC
* * **
20650267 GTCGGCCAGAGAGATGGGATGCATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
383 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
20650332 CTTCACATTTTTGCATCCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
448 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
20650396 C-TCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTA
513 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTA
** *
20650460 TTGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCC
578 CGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
** * * *
20650525 TTGTATTTTTGTTGGCATGCACAAACGAATTCAGCTAAGAACTCGAAGTGTGCAATATTTTGTGA
642 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
20650590 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATC
707 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
20650655 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGG
772 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
20650720 GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTGGCCCCCCCAATCGT
837 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
* * * **
20650779 CGGAACCCCAATTCCACCGATCAGGTTC-CC--CGA--------CAATGGTGCCCCGGTGAAGAA
1 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
** * * * * *
20650833 AAATGTAGCACCAGCACATGCCCGAGCCCAGCATCTGCTGCCGCAACACTCGGTCCGATCTGATC
66 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC-GTCCGGTCCGATC
* *
20650898 TTAGACTGGGAATGAACTCCATATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
130 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
20650963 TGAAAAGAGCGTCCGGGCGCTCAGCCGGCTAGAGGGGCGAGATGCACTAGCCCGGGATCGGCCGG
195 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCGGCTGG
* * ** * *
20651028 GTCCCCCTCTACGTGCTACCGATCCTGCTACCGCAAGCCTCGGTCCGGTTTCATCTTAGACTAGG
259 GTCCCCCTCTACGTGCT-CCGATCCTGCTACCGCAACCCTCAGTTTGGTCTGATCTTAGACTAGG
*
20651093 AATGAACTTCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCTGGCGGGCGGGCACTACG
323 AATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGC--G--GGCGGGCGGGCACTACG
* * *
20651158 CCGGCCAGAGAGACAGGATGTGCAA-CCTGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACAT
384 CCGGCCAGAGAGACGGGATGCGCAAGCC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
20651222 CTTCATATTTCTGAATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
448 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
20651287 CTTCACGTGATGTTTCATGGCAGGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTT-
513 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTA
* * * *
20651351 CAGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GCCCCAAACTTGGTGGACATCATC
578 C-GG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
20651415 ATTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTTGAAGTGTACAAGATTTTGTG
641 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
20651480 ACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTATTGGCTACTGGCAGGAAACCTGTAAAAT
706 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
20651545 CTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
771 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
20651609 GGCCAAGTACCAGCA-CCAACGCACATCATGTGCGCACAGCCCCTGGCCCCCCCGATCGC
836 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
* ** * ** *
20651668 C-GAACCCTAATGCCGTCGGTCAGGCTC-CCTGGCGATGCTCCGATGATGGTGCCCCGACGAAAA
1 CGGAACCCCAATGCCACCGGTCAGGTTCTCC-GGCGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * * *
20651731 AAAATGCCGCACCTGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACACTTGGTTCGGTCCGAT
65 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAAC-CCTCGTCCGGTCCGAT
* * * *
20651796 CTTAGATTAGGAATAAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCC
129 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** * * * * * *
20651861 ATGGAACGAGCGTGCGGGCGCTCAGCCGGGGAAAGTGGTGGGATGTGTAAGCCGAGGATCGACTG
194 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGCTG
* * *
20651926 GGTCCCCCTCTACGTGCTGCCAATCTTGCTACCGTAACCCTCAGTTTGGTCTGATCTTAGACTAG
258 GGTCCCCCTCTACGTGCT-CCGATCCTGCTACCGCAACCCTCAGTTTGGTCTGATCTTAGACTAG
* * * * *
20651991 GAAGGAACTCCGTATGCCTATGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGCTATGCCG
322 GAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
* * * *
20652056 GCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGATTGGTTTAGGCACATCTTC
387 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
20652121 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
452 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
20652186 TCGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGT
517 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGT
*
20652251 TCGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTA
582 TCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
20652315 TTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAACCCGAAGTGTACAAGATTTTGTGACCATT
647 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
20652380 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAA
712 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
20652445 TGCTCTTGAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
777 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
20652510 GTACCAGCACCCATCGCACATCATGTGCGTACACCCTCCCGGCCCCTCCGATCAC
842 GTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGC
* * *
20652565 CGGAACCCCAAAGCAACCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGGCCCCGACGAAGA
1 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT-GCCCCGACGAAGA
* ** * *
20652630 AAAATGTGGCACCAGCACATG-CCGAGCCTGGCATGTGCTGCTGTAACCCTCGTCTGGTCCGATC
65 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGTCCGGTCCGATC
* * *
20652694 TTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTGTGCCTAAGTCAACCCA
130 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * ** *
20652759 CGAAACAAGTGTGCGAGCGTTCAGCCGACCAGAGGGGCGGGATGCGTGAGCCAGGGATTGGCTGG
195 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCTGG
* ** * *
20652824 GTCCCCCTCTGCGTGCTATTGATTCCTGCTTGCCGCAACCCTCAGTTTGGTCTGATCTTAGACTG
259 GTCCCCCTCTACGTGCT-CCGA-TCCTGC-TACCGCAACCCTCAGTTTGGTCTGATCTTAGACTA
*
20652889 GGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCC
321 GGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCC
* * ** * * * * *
20652954 AGCTAGAGAGATTGGATGCGTAAGCCATGGATAGATAGGGTGGCAGGTGGGTTTAGGCACATCAT
386 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
20653019 CATATTTCTACATGCCAATGCCAATTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTT
451 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * **
20653084 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATTATTTTCAAAACTTTTTGTGG
516 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGG
* *
20653149 TTCTGGATTTTTAAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
581 TTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
20653214 TATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAATACTCGAAGTGTACAATATTTTGTGACCA
645 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
20653279 TTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCA
710 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
20653343 AATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGACCAATATAAGGGCC
775 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
20653408 AAGTACCAGCACCCATCGCACATCATGTGCGTACA-CCCCC-GTCCCCTCGATTGT
840 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
* * *
20653462 CGGAACCCTAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
1 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* * * ** *
20653527 AAATGAGGCACCAACACATGCCCGAGGCCAGCATGTGCTGCCACAACCCTCGGCCTGGTCCGATC
66 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGTCC-GGTCCGATC
* * *
20653592 CTAGACTGGGAATGAACTTCGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
130 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * *
20653657 CAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCCGGATGCGCAAGCTGGGGATCGG-TCG
195 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGATCGGCT-G
* * * * * ** *
20653721 GGTCTCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCT-TGATCCGGTCTGATCTTAGACTG
258 GGTCCCCCTCTACGTGCT-CCGATCCTGCTACCGCAACCCTCAG-TTTGGTCTGATCTTAGACTA
* ** *
20653785 GGAATGAACTCCGAATGCCTAAGCCAACCA-ACGAAACGA----GCGGGCGGGCAAGCACTACAC
321 GGAATGAACTCCGTATGCCTAAGCCAA-CAGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGC
* * *
20653845 TGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATCT
385 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
20653910 TCATATTTCTGCGTGCCAATGCCATTTTTGTGGCTTGTAAACTCATACAATGGTCCTTTAAG-CT
450 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
20653974 TCACGTGAAGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCACGATTTTGAAAGCTTTTTACG
515 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACG
* * * *
20654039 GTTTCGAGATTTTTTAAAAATTTTTCCAGAAGGATGTTTTGGACCC-AACCTGGTAGACGTGATC
580 G-TTCG-GATTTTTT-AAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
20654103 C-TGTAATTTTT-TTGGCTTGCACAAAAACAATTCAGCGT-AAAACTCAAAGTGTAGCAAGCTTT
641 CTTGT-ATTTTTGTTGGCATGCACAAAAA-AATTCAGC-TAAAAACTCGAAGTGTA-CAAGATTT
20654165 TGTGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
702 TGT-GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
20654230 AAAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTTCTCAAAGGTTTGATGAGAGGATAGGGGGC
766 AAAATCTCAAATGCTCTTT-AAGGGGGTGTGAG-TTCTC-GAGGTTTGATGAG-GGATAGGGGGC
20654295 CAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTG-GCACACCCCCCCCCGGCCCCCC
827 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCCCCCGGCCCCCC
*
20654358 GCGATTGC
889 -CGATCGC
* * * * * *
20654366 CGAAACCCCAATCCCGCC-GTTAGGCT-TCCGGTGATGCTCGCGGCGATGGTGCCCCGACGAAAG
1 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTC-CGGCGATGGTGCCCCGACG-AAG
* * * * * * * *
20654429 AAAATTACGACACCAGCACATTGCCCGAGCCCAGTAT-TGCTACCGTAACCCTCGGTCTGCGTCC
64 AAAAATGCGGCACCAGCACA-TGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC-GTCCG-GTCC
** *
20654493 TGATCTTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTC
126 -GATC-TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * * *
20654558 AACCCATAAAACGAGCGTGAGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGTTC
189 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATC
* * * * * ** * * * * *
20654623 -GATCGGGTCCTCCTCTATGTGCTGCCAATCCTACTGTCACAACCCTCGGTCTAGTTTGATCTTA
253 GGCT-GGGTCCCCCTCTACGTGCT-CCGATCCTGCTACCGCAACCCTCAGTTTGGTCTGATCTTA
* *
20654687 GACTAGGAATGAACTCCGTATGCCTAAGCCAATC-GACGAAACGAGCGAGCGGGTGGGCAGGCTG
316 GACTAGGAATGAACTCCGTATGCCTAAGCCAA-CAGACGAAACGAGCGGGCGGGCGGGC--G--G
* * *
20654751 GCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCTGTGGTTCGATAGGGTGGTAGGTGGGTTTA
376 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
20654816 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
441 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
20654881 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAA
506 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
**
20654946 -TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCTAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
571 CTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
20655010 GTGATCCTTGTATTTTTGTTGGCATGCACAAAGAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
635 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
20655075 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCGG
700 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
20655140 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGTATAGGGGGCCAA
765 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * ** *
20655205 TATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTTTGCACACCCCCCGGCCCCCCCGATCA
830 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
*
20655270 T
895 C
* * * * **
20655271 CGGAACCCCAATGCCACTGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTCGGTGAAGAA
1 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
** * * *
20655336 AAATATGGCACCAGCACATGCCC-AGGCCCAGCATGTGTTG-TCGCAACCCTTGGTCCGGCCCGA
66 AAATGCGGCACCAGCACATGCCCGA-GCCCAGCATGTGCTGCT-GCAACCC-TCGTCCGGTCCGA
*
20655399 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACC
128 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
20655464 AACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCTGGGGATCGAGC
193 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGATCG-GC
* ** * * * * * *
20655529 -GGGAT-----GC-ACAAG--CCGATCCTGCTACCACAACCCTCGGGTCGGTCCGATCTTAGTCT
256 TGGG-TCCCCCTCTACGTGCTCCGATCCTGCTACCGCAACCCTCAGTTTGGTCTGATCTTAGACT
* * * * *
20655585 GGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA----GCGGACGGGTGGGCACTATGC
320 AGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGC
*
20655646 CGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
385 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*** *
20655711 TCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCT
450 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
20655776 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACG
515 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACG
* * * * * ** *
20655841 ATTTCAGATTTGTTTAAAATTTTTTCAGAGGGATTTTTTTCCCCAAACTTGTTAGACGTGATCCT
580 -GTTCGGATTT-TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
20655906 TGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
643 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
20655971 CATTTGAAAAAAGTGTCCGCATTTCATACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCT
708 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
20656036 CAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGG
773 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
20656100 CCAAGTACCACCACCCATCGCACATCATGTGCGCACACCCCCCGG--CCCCCGATCAC
838 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
* * * * *
20656156 CGGAACCCCAAAGCAACC-GTCAAGTTC-CCGGTGATGCTCCGGCGATGGGTGCCCCGATGAAAG
1 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-GGTGCCCCGACG-AAG
* * * * * * *
20656219 AAAAATGCCGACACCAGCACATGCCCGAGCCCGGCATG-G-TACTTCGAACCGTTGGTGTCCAGT
64 AAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGC-AACC-CT--CGTCCGGT
* *
20656282 CCGA--TTAGACTAGGAATGAACTCCGTATGCTTAGGAC-AGGAATGAACTCCGCTATGGCCTAA
124 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTA-GACTGGGAATGAACTCCG-TAT-GCCTAA
* * * * * * *
20656344 GTCAACACC-CGAAA-GAGCGTACGGGTGCTCAGCCAGCCAGGACGGTCGAGATGCGCAAGCCAG
186 GTCAAC-CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA-GAGGGGCGGGATGCGCAAGCCGG
** * * * * *
20656407 GATCATC-GGGT-CCCCTCTATGTGCTGCCGATCCCTGCT-GCGTAACCCTC-GATCTGGTCCGA
249 GATCGGCTGGGTCCCCCTCTACGTGCT-CCGAT-CCTGCTACCGCAACCCTCAG-TTTGGTCTGA
* * * * *
20656468 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-TGAATGAAACGAAGCGGCGGGGGCAGG
311 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACAG-ACGAAACG-AGCGG-GCGGGCGGG
*
20656532 CGGGCACTTATGCCCGGCCTTAGAGAGACGGGATGCCGGCAAGCCGT-GATCGATTA-GGTGGTA
373 CGGGCAC-TACG-CCGGCC--AGAGAGACGGGATG-C-GCAAGCCGTGGATCGA-TAGGGTGGTA
* *
20656595 -GTGGGTTTAAGCACTTCTTCATA-TTCTTGCAT-CCAATGCCATTTTTTATGGCTTGCTTAAAA
431 GGTGGGTTTAGGCACATCTTCATATTTC-TGCATGCCAATGCCA-TTTTTATGGCTTG--T-AAA
20656657 TTCCATTACAATGCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTAT
491 TT-CA-TACAATG-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * * *
20656721 TTTTCAGGATTTTCAAAAAC-TTTTGCGTATTCGAGA-TCTTTAAATTTTTTTTCGCAAGGAGGT
553 TTTTCATGATTTT-TAAAACTTTTTACG-GTTCG-GATTTTTTAAA-ATTTTTTCGGAAGGA-G-
* *
20656784 TTTTGG-CCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGA
612 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
20656847 TAAAAGCTCGAAGTTGTACAAGATTTTGTGA-CATTTGAAAAAAGTGTCCGCATTTCATACAC-T
677 TAAAAACTCGAAG-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
20656910 TAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
741 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * ** *
20656974 GTTTGCTGAGGGATA-GGGGCCAACATAAGGGTGAAGTACCAGCACCCATCGCACATCA--TGAG
806 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
*
20657036 CACA-----C-ACCCCCCCGATCGC
871 CACACCCCCCGGCCCCCCCGATCGC
* *** * *
20657055 CAGAACCCCAATGCCGTGGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCTG-TGAAGA
1 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC-GACGAAGA
* *
20657119 AAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCGATCCGATCCGAT
65 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCG-TCCGGTCCGAT
* *
20657184 CTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
129 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
20657249 ATGAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGG-TC
194 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCT-
* * * * * **
20657313 AGG-CCCCCTCTATGTGCTGTCGATCCTACT-CTTGCAACCCTCA-TTTCGGTCCAATCTTAGAC
257 GGGTCCCCCTCTACGTGCT-CCGATCCTGCTAC-CGCAACCCTCAGTTT-GGTCTGATCTTAGAC
* * *
20657375 TAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGACGGGCGAGCAC
319 TAGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAAC--G-AG-CGGGCGGGCGGGCGGGCAC
* *
20657440 TACGCCGGCCAGAGAGACGGGATGCACTAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
380 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
20657505 CATCTTCATATTTCTGCACGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
445 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
20657570 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTCTGAAACCTT
510 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTT
* * * *
20657635 TTGCGGTTCAGGATTTTTTTAAAAGTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGATGTG
575 TTACGGTTC-GGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
20657700 ATCCTTGTATTTTAGTTGGCACGAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
638 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
20657765 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCACCAAACCTGTAA
703 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
20657830 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATAT
768 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
20657895 AAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGTGCACACCCCCCGG-CACCCCGATCGT
833 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
20657957 CGGA
1 CGGA
20657961 GCCAACCGAC
Statistics
Matches: 6236, Mismatches: 733, Indels: 417
0.84 0.10 0.06
Matches are distributed among these distances:
881 4 0.00
882 245 0.04
883 29 0.00
884 21 0.00
885 87 0.01
886 245 0.04
887 110 0.02
888 243 0.04
889 44 0.01
890 167 0.03
891 365 0.06
892 409 0.07
893 121 0.02
894 333 0.05
895 334 0.05
896 197 0.03
897 356 0.06
898 311 0.05
899 760 0.12
900 254 0.04
901 135 0.02
902 196 0.03
903 55 0.01
904 81 0.01
905 175 0.03
906 66 0.01
907 350 0.06
908 130 0.02
909 13 0.00
910 13 0.00
911 88 0.01
912 21 0.00
913 60 0.01
914 30 0.00
915 134 0.02
916 54 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGTCCGGTCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGGCTGGGT
CCCCCTCTACGTGCTCCGATCCTGCTACCGCAACCCTCAGTTTGGTCTGATCTTAGACTAGGAAT
GAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCA
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGG
ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
Found at i:20653629 original size:26 final size:26
Alignment explanation
Indices: 20653593--20653642 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20653583 GGTCCGATCC
*
20653593 TAGACTGGGAATGAACTTCGTATGGT
1 TAGACTGGGAATGAACTCCGTATGGT
20653619 TAGACTGGGAATGAACTCCGTATG
1 TAGACTGGGAATGAACTCCGTATG
20653643 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGGT
Found at i:20654548 original size:26 final size:26
Alignment explanation
Indices: 20654499--20654550 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20654489 GTCCTGATCT
**
20654499 TTAGACTGGGAATGAACTTTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20654525 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20654551 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20655429 original size:26 final size:26
Alignment explanation
Indices: 20655400--20655452 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20655390 CCGGCCCGAT
*
20655400 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
20655426 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
20655452 C
1 C
20655453 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:20657213 original size:26 final size:26
Alignment explanation
Indices: 20657184--20657236 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20657174 CCGATCCGAT
*
20657184 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20657210 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20657236 C
1 C
20657237 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20658477 original size:561 final size:564
Alignment explanation
Indices: 20657398--20658523 Score: 1826
Period size: 561 Copynumber: 2.0 Consensus size: 564
20657388 CGTATGCCTA
20657398 AGCCAACCGACGAAACGAGCAGACGGGCGGACGGGCGAGCACTACGCCGGCCAGAGAGACGGGAT
1 AGCCAACCGACGAAACGAGCAGACGGGCGGACGGGCGAGCACTACGCCGGCCAGAGAGACGGGAT
* * * *
20657463 GCACTAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCACGCCA
66 GCACAAGCCCTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTACACGCCA
*
20657528 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
131 AAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
20657593 CAAGACGACTCGTTTTCTATTTTTCATGATTTCTGAAACCTTTTGCGGTTCAGGATTTTTTTAAA
196 CAAGACGACTCGTTTTCTATTTTTCATGATTTCTGAAACCTTTTGCGATTCAAGATTTTTTTAAA
* *
20657658 AGTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTAGTTGGCACG
261 AGTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGGTGGCACG
*
20657723 AACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
326 AACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
20657788 CCATTTCAGACACTTTAATGGCTATTGGCACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
391 CCATTTCAGACACTTTAAAGGCTACTGGCACCAAACCTATAAAATCTCAAATGCTCATTAAGGGG
* * *
20657853 GTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
456 GTGTGAGTTCTCCAGGTTTGATGAGAGATAGCGGGCCAATATAAGGGCCAAATACCAGCACCCAT
* *
20657918 CGCACATCTTGTGTGCACAC-CCCCCGGCA-CCCCGATCGTCGG
521 CGCACATCATGTGTGCACACGCCCCCGGCACCCCCGATCGCCGG
* * * * * *
20657960 AGCCAACCGACGAAACGAGCAGGCGGGTGGGCGGGCGGGCACTACGCTGGCCAGTGAGACGGGAT
1 AGCCAACCGACGAAACGAGCAGACGGGCGGACGGGCGAGCACTACGCCGGCCAGAGAGACGGGAT
* **
20658025 GCGCAAGCCCTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTACGTGCCA
66 GCACAAGCCCTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTACACGCCA
20658090 AAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
131 AAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
20658155 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTCAAGATTTTTTT-TA
196 CAAGACGACTCGTTTTCTATTTTTCATGATTTCTGAAACCTTTTGCGATTCAAGATTTTTTTAAA
* * ** * * *
20658219 ATTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTGGTGGCATG
261 AGTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGGTGGCACG
*
20658284 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
326 AACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
20658349 CCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTATAAAATCTGAAATGCTCATTAAGGGG
391 CCATTTCAGACACTTTAAAGGCTACTGGCACCAAACCTATAAAATCTCAAATGCTCATTAAGGGG
* *
20658414 GTGTGAGTTCTCCAGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAATACCGGCACCCAT
456 GTGTGAGTTCTCCAGGTTTGATGAGAGATAGCGGGCCAATATAAGGGCCAAATACCAGCACCCAT
**
20658479 CGCACATCATGTGTGCACACGGTCCCGGCACCCCCGATCGCCGG
521 CGCACATCATGTGTGCACACGCCCCCGGCACCCCCGATCGCCGG
20658523 A
1 A
20658524 ACCCCAATGC
Statistics
Matches: 517, Mismatches: 45, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
561 258 0.50
562 246 0.48
563 13 0.03
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (564 bp):
AGCCAACCGACGAAACGAGCAGACGGGCGGACGGGCGAGCACTACGCCGGCCAGAGAGACGGGAT
GCACAAGCCCTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTACACGCCA
AAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCATGATTTCTGAAACCTTTTGCGATTCAAGATTTTTTTAAA
AGTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGGTGGCACG
AACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAAAGGCTACTGGCACCAAACCTATAAAATCTCAAATGCTCATTAAGGGG
GTGTGAGTTCTCCAGGTTTGATGAGAGATAGCGGGCCAATATAAGGGCCAAATACCAGCACCCAT
CGCACATCATGTGTGCACACGCCCCCGGCACCCCCGATCGCCGG
Found at i:20658700 original size:26 final size:26
Alignment explanation
Indices: 20658649--20658701 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20658639 CCAGTCTGAT
* *
20658649 CTTAGACTCGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
20658675 CTTAGACTAGGAATGAACT-TCATATG
1 CTTAGACTAGGAATGAACTCT-ATATG
20658701 C
1 C
20658702 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:20659593 original size:26 final size:26
Alignment explanation
Indices: 20659556--20659605 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20659546 TGGTCTGATT
20659556 TTAGACTAGGAATGAACTCCGTATTC
1 TTAGACTAGGAATGAACTCCGTATTC
*
20659582 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTAGGAATGAACTCCGTAT
20659606 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATTC
Found at i:20660506 original size:26 final size:26
Alignment explanation
Indices: 20660455--20660507 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20660445 CCAGACCAAT
* *
20660455 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20660481 CTTAGACTGGGAGTGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
20660507 C
1 C
20660508 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20661406 original size:26 final size:26
Alignment explanation
Indices: 20661356--20661408 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20661346 CTGGTCTGAT
**
20661356 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20661382 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20661408 C
1 C
20661409 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20661867 original size:905 final size:904
Alignment explanation
Indices: 20657960--20662496 Score: 6499
Period size: 906 Copynumber: 5.0 Consensus size: 904
20657950 CGATCGTCGG
* ** * *
20657960 AGCCAACCGACGAAACGAGCAGGCGGGTGGGCGGGCGGGCACTACGCTGGCCAGTGAGACGGGAT
1 AGCCAACCGATGAAACGAGCAGGCGGCCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * *
20658025 GCGCAAGCCCTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTACGTGCCA
66 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
20658090 AAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
131 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * **
20658155 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTCAAGATTTTTTTTAA
196 CAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA
* * * *
20658220 TTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTGGTGGCATGC
261 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
20658285 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
326 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
20658350 CATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTATAAAATCTGAAATGCTCATTAAGGGGG
391 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
20658415 TGTGAGTTCTCCAGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAATACCGGCACCCATC
456 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
20658480 GCACATCATGTGTGCACA-CGGTCCCGGCACCCCCGATCGCCGGAACCCCAATGCCGCCGGTTAG
521 GCACATCATGTGTGCACACCCG-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTTAG
** * * * *
20658544 GTTCTCCGACGATGCTCTGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCATCACATGCCCG
585 GTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * ** ** * *
20658609 AGCCCAGCATGTGCTATCGCAACCCTCTATCCAGTCTGATCTTAGACTCGGAATGAACTCTGTAT
650 AGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * **
20658674 GCTTAGACTAGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGTGTGCAAGCGCTCAG
715 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * * **
20658739 CCGGCCAGAAGGGCGGGATGCGTAAGCC-AGGGATCGGCCGAGTCCCCTTCTACGTGCTATCAAT
780 CCGGCCAGAGGGGCGGGATGCACAAGCCGA-GGATCGACTGGGTCCCCCTCTGCGTGCTGCCAAT
* * * * *
20658803 CCTGCTGTCGTAACCCTC-GATCCAGTCCAATCTTAGACTAGGAATGAACTTCGTATGCCTA
844 CCTGCTGCCGTAACCCTCGGTTCGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* ** * ** * * **
20658864 AGCCAAGCGATGAAACGAGTGGGCGGGCGGGCATGCAGGCATTACGCCGGCCAGAGAGATAGGAT
1 AGCCAACCGATGAAACGAGCAGGCGGCCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
20658929 GCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCA
66 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
20658994 ATGCCATTTTTATGTCTTGTAAATTCATACAACGGGT-CCTTAAGCCTTCACGTGAAGTTTCATG
131 ATGCCATTTTTATGGCTTGTAAATTCATACAA-TGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
20659058 GCAAGACGA-TTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTGAA
195 GCAAGACGACTT-GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAA
* ** *
20659122 AATTTTTTCAGAAGGAGTTTTGGCTGCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
259 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
20659187 GCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
324 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
20659252 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATCAAAT-TGCAAATGCTCTTTAAGG
389 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-CAAATGCTCTTTAAGG
20659316 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
453 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
20659381 ATTGCACATCATGGGTGCACACCCCGCCCGGCCCCCCCGATCGCCGGAACCCCCAATGCCGCCGG
518 ATCGCACATCATGTGTGCACA-CCCGCCCGGCCCCCCCGATCGCCGGAA-CCCCAATGCCGCCGG
* * * * *
20659446 TTAGGCTCTCCGGCGATGTTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACTTG
581 TTAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * * *
20659511 CCCGAGCACAGCATGTGCTACCGTAATCCTCGATCTGGTCTGATTTTAGACTAGGAATGAACTCC
646 CCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
* *
20659576 GTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCGC
711 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* *
20659641 TCAGCCGGCCAGAGGGGCGGGATGCAAAAGCCGAGGATCGGCTGGGTCCCCCTCTGCGTGCTGCC
776 TCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCTGCC
* * * *
20659706 GATCTTGCTGCCATAACCCTCGGTTTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
841 AATCCTGCTGCCGTAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
20659770 AGCCAACCGATGAAACGAGC-GGTCGGCTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
1 AGCCAACCGATGAAACGAGCAGG-CGGCCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
*
20659834 CGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
65 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
20659899 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
130 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
20659964 GCAAAATGACTTGTTTTCTATTTTTCA-CAATTTTGAAACTTTTTACGGTTCAGGATTTTTTAAA
195 GCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAA
* *
20660028 ATTTTTTTGGAAGGAGTTTTGGCCTCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
260 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
20660093 CAAAAAAAAATTCAGGTAAAACCTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
325 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
20660158 CCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
390 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
20660223 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCAT
455 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
20660288 CGCACATCATGTGTGCACACCC-CCCGGCCCCCTCGAACGCCGGAACCCCAATGCCG-CGGTCAG
520 CGCACATCATGTGTGCACACCCGCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTTAG
* * *
20660351 GTTCTCCGGTGATGCTCCGGGGATGGTGCCCAG-CGAAGAGAAATGCGGCACCAGCACATGCCCG
585 GTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
** ** * ** *
20660415 AGCCCAGCATGTGCGGCCGTAACCCTCGGTCCAGACCAATCTTAGACTGGTAATGAACTCCGTAT
650 AGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* ** * *
20660480 GCTTAGACTGGGAGTGAACTCTATATGCCTAAGTCAACCCATGAGACGAGCGTGCGGGCGCTCAG
715 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
20660545 CCGGCCAGAGGCGCGGGATGCGCAAGTCGAGGATCGA-TCGGGTCCCCTTCTGTGTGCTGCCAAT
780 CCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACT-GGGTCCCCCTCTGCGTGCTGCCAAT
* ** * * ** *
20660609 CCCGCTAACGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
844 CCTGCTGCCGTAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
20660670 AGCCAACTGATGAAAC--G-A-GCGGCCGGGCGGGCGGGCACTACGCCGGCCAGTGAGACGGGAT
1 AGCCAACCGATGAAACGAGCAGGCGGCCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * *
20660731 GTGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCA
66 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
20660796 AAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
131 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
20660861 CAAGAGGACTCGTTCTC-ATTTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
196 CAAGACGACTTGTTTTCTA-TTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAA
* * * * *
20660925 ATTTTTTCAGAAGGAGTTTTGGACCCAAGCCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
260 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
20660990 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGCTTTTGTGACCATTTGAAAAAAGTGTCC
325 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
20661055 CCATTCCAGACACTTTAAAGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGG
390 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
20661120 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCAT
455 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
20661185 CACACATCATGGGCGCACACCCCGCCCGGCCCCCCCGATTGCCGAAACCCCAATGCCGCCAGTTA
520 CGCACATCATGTGTGCACA-CCCGCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTTA
* * * * *
20661250 GGCTCTCCGGTGATGCTCTGGCGATGGTGCCCCGACGAAGAAAATTACGACACCAGCACATGCCC
584 GGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* **
20661315 GAGCCCAGTATGTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTA
649 GAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
*
20661380 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCGCTCA
714 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
20661445 GCCGGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGACTGGGTCCCCCTCTGCGTACTGCCGAT
779 GCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCTGCCAAT
* * * * * *
20661510 CTTGCTGCCGTAACCCTCAGTTTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTG
844 CCTGCTGCCGTAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
20661571 AGCCAACCGATGAAACGAGCAGTCGGCCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGAC
1 AGCCAACCGATGAAACGAGCAGGCGGCCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
20661636 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
66 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
20661701 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
131 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
20661766 CAAGATGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTATGCGGTTCAGGATTTTTGAAAA
196 CAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA
*
20661831 TTTGTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
261 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
20661896 ACAAAAAAATTCAGCTAAAAAGTTGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
326 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
20661961 CATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
391 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
20662026 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAACTACCAGTACCCATC
456 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
20662091 GCACATGTAAAATGTGCGCACACCC-CCCGG-CCCCCCGAACGTCGGAACCCCAATGCCGCTGGT
521 GCACA--T--CATGTGTGCACACCCGCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
*
20662154 CAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
582 TAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
** * * * * * *
20662219 TTGCGGCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCG
647 CCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * *
20662284 TATGCTTAGACCGGGAATGAACTGCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACT
712 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
20662349 CAGCAGGCCAGAGGGGCAGGATGCACAAGCCTG-TGATCGGCCT-GGTCCCCCTCTGCATGCTGC
777 CAGCCGGCCAGAGGGGCGGGATGCACAAGCC-GAGGATC-GACTGGGTCCCCCTCTGCGTGCTGC
* * * *
20662412 CTATCCTGCTGCTAG-AACCCTTGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
840 CAATCCTGCTGC-CGTAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
20662476 A
904 A
*
20662477 AGCCAACCGACGAAACGAGC
1 AGCCAACCGATGAAACGAGC
20662497 GTGCGGGCGC
Statistics
Matches: 3240, Mismatches: 360, Indels: 64
0.88 0.10 0.02
Matches are distributed among these distances:
895 1 0.00
896 184 0.06
897 290 0.09
898 4 0.00
899 31 0.01
900 292 0.09
901 292 0.09
902 12 0.00
903 24 0.01
904 485 0.15
905 785 0.24
906 810 0.25
907 17 0.01
908 3 0.00
909 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (904 bp):
AGCCAACCGATGAAACGAGCAGGCGGCCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA
TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGTGCACACCCGCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTTAGG
TTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
GCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCTGCCAATCC
TGCTGCCGTAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
Found at i:20662299 original size:26 final size:26
Alignment explanation
Indices: 20662262--20662314 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20662252 CTGATCTGAT
*
20662262 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
20662288 CTTAGACCGGGAATGAACTGCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
20662314 C
1 C
20662315 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:20662581 original size:159 final size:159
Alignment explanation
Indices: 20662288--20662650 Score: 424
Period size: 159 Copynumber: 2.3 Consensus size: 159
20662278 ACTCCGTATG
* * * * *
20662288 CTTAGACCGGGAATGAACTGCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGCACTCAAC
* ** * * * * *
20662353 AGGCCAGAGGGGCAGGATGCACAAGCCTGTGATCGGCCTGGTCCCCCTCTGCATGCTGCCTATCC
66 AGACCAGAGGGGCAGGATGCACAAGCAGGGGATCGACCTGGTCCCCCTCTACATGCTACCGATCC
*
20662418 TGCTGCTAG-AACCCTTGGTTCGGTCCAAT
131 TGCTGC-AGCAACCCTTGGTCCGGTCCAAT
* *
20662447 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGCACTCAAC
* * * *
20662512 CGACCAGAGGGGCGGGATGCGCAAGCAGGGGATCGACC-GCGTCCCCCTCTACGTGCTACCGATC
66 AGACCAGAGGGGCAGGATGCACAAGCAGGGGATCGACCTG-GTCCCCCTCTACATGCTACCGATC
* * * ***
20662576 TTGCTGCCGCAACCCTTGGTCCTGTTTGAT
130 CTGCTGCAGCAACCCTTGGTCCGGTCCAAT
* * * *
20662606 CTTACAGTTGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
20662651 TGAGTGAGCG
Statistics
Matches: 171, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
158 2 0.01
159 169 0.99
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGCACTCAAC
AGACCAGAGGGGCAGGATGCACAAGCAGGGGATCGACCTGGTCCCCCTCTACATGCTACCGATCC
TGCTGCAGCAACCCTTGGTCCGGTCCAAT
Found at i:20663352 original size:26 final size:26
Alignment explanation
Indices: 20663323--20663375 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20663313 CCGATCTGAT
*
20663323 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
*
20663349 CTTAGACTGGAAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
20663375 C
1 C
20663376 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:20664588 original size:895 final size:894
Alignment explanation
Indices: 20662461--20666050 Score: 4835
Period size: 895 Copynumber: 4.0 Consensus size: 894
20662451 GACTGGGAAT
* * * * *
20662461 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCG
1 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * * *
20662526 GGATGCGCAAGCAGGGGATCGACCGCGTCCCCCTCTACGTGCTACCGATCTTGCTGCCGCAACCC
66 GGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCC
* * ** * * * * * *
20662591 TTGGTCCT-GTTTGATCTTACAGTTGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAATGAG
131 TCGGT-TTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-CA-
* * * *
20662655 TGAGCGGACGGGTGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGGGCAAGCCGTGGATCGAT
193 --AGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
20662720 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
256 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTG
* *
20662785 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACAACTCGTTTTCTA
321 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
20662850 TTTTTCACGA-TTTTCAAACCTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTT
386 TTTTTCACGATTTTTGAAACC-TTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * *
20662913 TTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAGAAATTCAGCTA
449 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTA
* *
20662978 AAAACTCCAAGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAA
514 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * * *
20663042 TTGCTACTGACAGCAAACCTGT-GAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATT
579 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGCGAGTTCTCGAGGTT
* * * *
20663106 TGATGAGGGATA-GGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAC
644 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCAC
** * * * * *
20663170 ACCCCCCCGCCGGCCCCCTGATCACCGTAACCCCAATGCCGCTGGTCAGGTTCTCTGGCGATGCT
709 ACCCCCTGGCC--CCCCC-GATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCT
** * *
20663235 CCGAAGATGGTGCCCCAGTGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTG
771 CCGGCGATGGTGCCCGA-TGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCCG
* * * *
20663299 CCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
835 TCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** * * * * *
20663359 AAATGAACTTTGTATGCCTGAGTCAACCCACGAAAAGAGCGTGCGGGTGCTCAGTCGGCCAGAGG
1 ----GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGG
* * * * *
20663424 AGC-GGATGCGCAAGCC-AGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTATTGCTGC
62 GGCGGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGC
* * *
20663487 AACCCTCGGTTTGGTCCGATCTTAGACTAGTAATGAACTCCGTATGCCTAAGCCAACCGACGAAG
126 AACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
20663552 CGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAG-AGTGGATCGAT
191 CAAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
20663616 AGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGCATGCCAAAGCCATTTTTATGGCT
256 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGCCATTTTTATGGCT
* *
20663679 TGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
319 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
20663744 TTTTTTTCACGATTTTTGAAACCTTTTGCGGTTCGGGATTTTTTTAAAATTTTTTTGGAAGGATT
384 TATTTTTCACGATTTTTGAAACCTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGT
* *
20663809 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
448 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCT
*
20663874 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTA
513 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
20663939 ATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTCAGGGGATGCGAGTTCTTGAGGT
578 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGCGAGTTCTCGAGGT
* * *
20664004 TTGGTGAGGGATAGGGGGCCAATATAAGGGCCAGGCACTAGCACCCATCACACATCATGTGCGCA
643 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCA
20664069 CACCCCCTGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCC
708 CACCCCCTGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCC
*
20664134 GGCGATGGTGCCCTGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCCGTC
773 GGCGATGGTGCCC-GATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCCGTC
* * * *
20664199 ACAACCCTCAGTTCGGTCCGATCTTATACTGGGAATGAACTCTGTATGCTTAGACTGG
837 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
20664257 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGTCGGCCAGAGGGTCG
1 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * * *
20664322 GGATGCACAAGCCGAGGATTGGCCGGGTCCCCCTCTACTTGCTGCTGATCTTGCTGCTGCAACCC
66 GGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCC
* * *
20664387 TCCGTCTT-GTCCGATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCAACCAACGAAACAAG
131 TCGGT-TTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAG
* * * * *
20664451 CGGGCGGGCAGGCGGGCACTACGTCGGTCAGAGAGACGGGATGCGC-AGCCGTGCATCGATCGTG
195 CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
20664515 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGACTTGTAAA
260 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAA
* * *
20664580 TTCATACAACGATCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
325 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
20664645 TTAGGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
390 TCACGATTTTTGAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
20664710 CCAAACTTGGTTGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCGGCTAAAAACT
455 CCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
20664775 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTA
520 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* ** *
20664840 TTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGCGAGTTCTTAAGGTTTGGTGA
585 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGCGAGTTCTCGAGGTTTGATGA
* *
20664905 GGGATAGGGGGCCAATATAAGGGCCAGGCACCAGCACCCATCACACATCATGTGTGCACACCCCC
650 GGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACA-CCCC
*
20664970 CTGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGCGAT
714 CTGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT
* * *
20665035 GGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACC
779 GGTG-CCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCCGTCGCAACC
** * *
20665100 CTTGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
843 CTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
20665152 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTATGGGCGCTCAGCCGGCCAGAGGGGCG
1 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
* * * ** *
20665217 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGTTGTCGATCCTACCACCGTAACCC
66 GGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCC
* * * ** *
20665282 TCAGTTTGGTCCGATGTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCAATTGATGAAACAAGC
131 TCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAA--
* *
20665347 GTGCGGGTGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
194 --GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
20665412 GGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
257 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGT
*
20665477 AAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
322 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
20665542 TTTTCACGATTTTTGAAACTTTTTACGGTTTGAGAATTTTT-AAA-TTTTTCGGAAGGAGTTTTG
387 TTTTCACGATTTTTGAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * *
20665605 GCCCCAAACTTGGTAGACGTGATCCTTGTATCTTTCTTGGCATGCACAAAAAAATTTAGCTAAAA
452 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAA
20665670 ACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACAC-TTAATGG
517 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-G
* *
20665733 GCTACTGGCAGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
581 GCTACTGGCA-GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGCGAGTTCTCGAGGTTT
* **
20665798 GATGA-GGATAGGGGGGGCCAATAT-AGGGCCAAGTACCAGCACCCATTTGCACATCAATGTGCG
645 GATGAGGGATA--GGGGGCCAATATAAGGGCCAAGCACCAGCACCCA-TCACACATC-ATGTGCG
* * ** * * *
20665861 CACACGGCCCC-GG---CCCCGATCGTCG-AA-CCCAATACCGTCGATCAGGTTCTCTGGTGATG
706 CACAC--CCCCTGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATG
* * ** * *
20665920 CTCCAGCGATGGTGCCCGAGGAAAAGAAAAATGTGGCACCAACACTTGCCCTGAGCCCAGCATGT
769 CTCCGGCGATGGTGCCCGATG--AAGAAAAATGCAGCACCAGCACATGCCC-GAGCCCAGCATGT
* * * *
20665985 GCTGCCTC-CAA-CCTCGGTCCTGGTCCAACCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-
831 GC--CGTCGCAACCCTCAGTCC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
20666047 GG
893 GG
20666049 GA
1 GA
20666051 TTGCGCACGC
Statistics
Matches: 2403, Mismatches: 245, Indels: 85
0.88 0.09 0.03
Matches are distributed among these distances:
894 341 0.14
895 686 0.29
896 188 0.08
897 304 0.13
898 372 0.15
899 115 0.05
900 240 0.10
901 104 0.04
902 53 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (894 bp):
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
GGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCC
TCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC
GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CACGATTTTTGAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGCGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACACCCCCT
GGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
TGCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCCGTCGCAACCCTC
AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
Found at i:20666713 original size:26 final size:26
Alignment explanation
Indices: 20666677--20666732 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
20666667 CAAGTTCGAT
**
20666677 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20666703 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20666729 CTTA
1 CTTA
20666733 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20675590 original size:26 final size:26
Alignment explanation
Indices: 20675542--20675592 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
20675532 GATCCGATCT
*
20675542 TAGAATGGGAATGAAATATGTATGCA
1 TAGAATGGGAATGAAATACGTATGCA
* * *
20675568 TAGACTGGGAATGAACTCCGTATGC
1 TAGAATGGGAATGAAATACGTATGC
20675593 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGAATGGGAATGAAATACGTATGCA
Found at i:20676473 original size:26 final size:26
Alignment explanation
Indices: 20676444--20676496 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20676434 CCAATCCGAT
20676444 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20676470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20676496 C
1 C
20676497 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20676989 original size:901 final size:897
Alignment explanation
Indices: 20674824--20679887 Score: 5806
Period size: 904 Copynumber: 5.7 Consensus size: 897
20674814 GTCCTGTTCG
*
20674824 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC--G-A-GCGGGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAACGGGCAGGCGGGCG
* * * * * * * *
20674885 GGCGGGCACTATGTC-GGTCAAAGAAACGGGATGCGTAAGCCGTAGATTGATAGGGTGGTAGGTG
65 GGCGGGCACTACGCCAGCT-AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
20674949 GTTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCACTTTTATGGCTTGTAAATTCATACAA
129 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
20675014 TGCTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTT
194 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * *
20675079 TTGAAACTTTTTACGGTTCCTGATTTTTCAAAA-ATTTTTCAGAAGGAGTTTTGGCCCCATACTT
259 TTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTCA-AAGGAGTTTTGGCCCCAAACTT
* * *
20675143 GGTAGACGTGATCCTTGGATTTTTCTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGT
323 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
20675208 ACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
* *
20675273 AAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTC-ATGGTTTGATGAGGGTTAT
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATA-
* * *
20675337 GG-GGCCAATATAAGGGCCAAGTACCAGCTCCCATCCCACATCATGTGCGCACACCCCCCC-GAC
516 GGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * * * * *
20675400 CCCCCGATC-ACCAGAACCCCAATGCTGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGC
581 CCCCCGATCGTCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * *
20675464 CCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTTGG
645 CCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGG
* ** *
20675529 TCTGATCCGATCTTAGAATGGGAATGAAATATGTATGCATAGACTGGGAATGAACTCCGTATGCC
710 TC---TCCGATCTTAG-CT-GGAATG-AATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
20675594 TAAGTCAACCACACGAAACGAGCGTGCGGGTGCTCAG-CGGACCAGAGGGGTGGGATGCGCAAGT
769 TAAGTCAACC-CACGAAACGAGCGTGCGGGCGCTTAGCCGG-CCAGAGGGGCGAGATGCGCAAGC
* * * * * * * *
20675658 CGGGGATCGGTCGGGTCCCCTTCTACGTGCTGCCGATCTTGCCACCGCAACCCTCTGTCCGGAT-
832 CAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGG-TC
20675722 CA
896 CA
* * * ** * ** *
20675724 ATCTTAGACTGGGAATGAACTCTGTATGCCTAATCCAACCGACGAACCGAGTGGGCTGGTAGACG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA-AGAACGGGCAGGCGGGCG
* * *
20675789 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
65 GGCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
20675854 GATTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAAT
130 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
20675919 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * *
20675984 TGAAACTTTTTGCGGTTCGGGATTGTTTAAAA-TTCTTTCGGAAGGAGTTTTGGCCCCAAACTTT
260 TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTC-AAAGGAGTTTTGGCCCCAAACTTG
* * * * *
20676048 TTAGACGTGATACTTGTATTTTTTTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCAAAATGTA
324 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * * * *
20676113 CAAAATTTTTTGACCCTTTGAAAAAAGTGTCTCCATTTCAAACATTTTAGTGGCTACTGGCAGCA
389 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
* *
20676178 AACCTGTAAAATCTGAAATGCTCTATAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGA
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGA
* * * * *
20676242 GGCCAATATAAGGGCCAAGTATCAACACCCATCGCACATCATTTGTGCACACCCCCCCGACCCCC
519 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * * *
20676307 CCGATCGTCGAAACCCCAATGCTGCCGGTCAGGTTCTTCGGTGACGCTCCGACGATGGTGCCCCG
584 CCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
* * * **
20676372 ACGAAGAAAAAAGCAGCACCAGCACATGCCCGAGCCCAATATGTGCTGCTGTAACCCTCGGTCCA
649 ATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGT-C-
20676437 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
712 -TCCGATCTTAG-CT-GGAATGAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
20676502 TCAACCCATGGAACGAGCGTACGGGCGCTTAGCCAGCCAGAGAGGCGAGATGC-AAAGCCAAGGA
773 TCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGAGATGCGCAAGCCAGGGA
* * * * *
20676566 TCGA-CTGGGTCCCCCTCTGTGAGCTGCCGATCCTGTTGCCGCAACCCTCAGTCTGGTCCG
838 TCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCA
* *
20676626 ATCTCAGACTGGGAATGAACT-CGTATGCCTAAGCCAATCGACGAAATGAACGGGCAGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAACGGGCAGGCGGGCG
* * * * * *
20676690 GGCGGGCACTACGCCAACTAGAGAGATGGGATGCACAAGCCGGGGATCGATAGAGTGGGAGGTGG
65 GGCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
20676755 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
20676820 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTCGTTTTCTATTTTTCACGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * ** * * **
20676885 AGAAACTTTTTGCGGTTCTTGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAATTTT
260 TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTCAAAGGAGTTTTGGCCCCAAACTTGG
* * * *
20676950 TAAACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGAAC
325 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
20677015 AAGATTTTGTGACCCTTTGAAAAAACTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
* * * ** *
20677080 ACCTATAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGCTTTG-TGAAAGATAGGG
455 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGA
* *
20677144 GGCCAATATAAGGGCTAAGTTA-CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCC
519 GGCCAATATAAGGGCCAAG-TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * * *
20677208 CTCGATCGTC-AGAACCCTAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCC
583 CCCGATCGTCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
* * *
20677272 CGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCGGTAA-CC-C--T-
647 CGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTC
* **
20677332 T--GGTC----C--G---G--TCCG-AT-CTTAGACTGGGAATGAACTGTGTATGCCTAAGTCAA
712 TCCGATCTTAGCTGGAATGAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
20677382 CCTACGAAACGAGGGTGCAGGCGC-TAGGCCGGCAAGAGGGGTGAGATGCGCAAG-CTGGAGATC
777 CCCACGAAACGAGCGTGCGGGCGCTTA-GCCGGCCAGAGGGGCGAGATGCGCAAGCCAGG-GATC
* * * *
20677445 GATCGGGTCCCCCTCTGCTTCCTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCCA
840 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCA
*** *
20677503 ATCTTAGACTGGGAATGAACTTTATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGACGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAA-CGGGC--A-----G
* * *
20677568 GACGGGCGGGCAGGCACTATGCCAGCTAGAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTG
58 G-CGGGCGGGCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * ** **
20677633 GTAGCTGAGTTTAGGCACATCTTTATATTTCTTTACACCAATGCCATTTTTATGGCTTGTAAATT
122 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * * * *
20677698 CATACAATGTTCCCTTAAGCCTTCACATCAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTT
187 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* *
20677763 AGGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTTCAGAAGGAGTTTTCGCCC
252 ACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTCA-AAGGAGTTTTGGCCC
* * * * * * *
20677827 CAAACTTGTTAGATGGGATCCTTTTATTTTTGTTGGCATGCACAAAACAATTCAGCT-AAAGCTC
316 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
20677891 GAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
381 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
* * * *
20677956 TGGCAGCAAACCTGTAAAATCTCAACTGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGGTGAG
446 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * * *
20678021 GGATAGGGGGCCAATTTAGGGGCCAAGTACCAGCACCCATCACACATCATGAGCGCACACCCCCC
511 GGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
** * * *
20678086 CGGCCCCCCCGATCACCAAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGGCGATG
576 CGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
* * * * * * * *
20678151 GTGCCCTGACGAAAAAAAATGCGACACCAGCACATGCCTGAGCCCAGCGTGTGCTGTTGCAACCC
641 GTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCC
*
20678216 TC-G-----G-TC----C--G---G--TCCG-AT-CTTAGACTGGGAATGAACTCTGTATGCCTA
706 TCGGTCTCCGATCTTAGCTGGAATGAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ** * **
20678261 AGTCAACCCACGAAATGAGCGTGCGGGCGATTAATCGGCCAGAGGGGCGGGATGCGCAAGCTGGG
771 AGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGAGATGCGCAAGCCAGG
* * * * * ** *
20678326 GATTGATCGGGTCTCCCTCTACGTGCTACCGATCCTGCAACCGCAACCCTTGGTCTGGTCCG
836 GATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCA
* * * * * * * *
20678388 ATCTAAGAATGGGAATGAACTGCATATGCCTAAGCCACCCGATG--A-AACGAGCGGGCGGGCGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAACGGGCAGGCGGGCGG
* * * *
20678450 GCAGGCACTACGTCGGCTAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGG
66 GCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * * *
20678515 TTTTGGTACATCTTCATATTTCTACGTGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
20678580 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAGACGACTCATTTTTTATTTTTCATGATTTTG
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
*
20678645 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTCAAAGGCGTTTTGGCCCCAAACTTGGT
261 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTCAAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
20678710 GGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCCAAAAACTCAAAGTGTACA
326 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
20678775 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
391 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
* * *
20678840 CCTATAAAATCTCAAATACTCTTT-A---GGTTTGA----T-GAGG---GAT-A--G--A-G-GG
456 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGG
* * *
20678886 CCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGAGCACACACTCCGCCCCCGG-CCC
521 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CC-CCCCCGGCCCC
* * * * * * *
20678950 CCCGATCGTCGAAACCCCATTGCCGTCGGTCAGGTTCTCCGACGATACTCTGGCAATGGTGCCCT
583 CCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* * * *
20679015 GATGAAGAAAAATGTGGCACCAGTACATGCCTGAGCCCAGCATGTTCTG-TCGTAACCCTCGGTC
648 GATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GTAACCCTCGGTC
* * * *
20679079 TGGTCCGAGCTTAGCCTAGGAATGAACTCCATACGCTTAGACTAGGAATGAACTCCGTATGCCTA
712 ---TCCGATCTTAG-CT-GGAATGAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * * *
20679144 AGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCAAAGGGGC-AGGATGCGTAACCCAA
771 AGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGA-GATGCGCAAGCCAG
* * * **
20679208 AGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCATAACCCTCAGT-TCGGTCCA
835 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCT-GGTCCA
* * * *
20679271 ATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGA--ACA-AA----CA----AGCGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAACGGGCAGGCGGGCGG
* * *
20679325 GCGGGCACTACGCCAGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGG
66 GCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** *
20679390 TTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
20679455 GT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTATGATTTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * ** * ** *
20679519 AAAACTTTTTGCGGTTGGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGTGCCAAGCTTGG
261 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTC-AAAGGAGTTTTGGCCCCAAACTTGG
*
20679583 TAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
325 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
20679648 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACGGCTACTGGCAGCAA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
* *
20679713 ACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GAG
455 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGA-
* * *
20679777 GGCCAATATAAGGG--ATAGTACCAACA-CCATCACACATCATGTGCGCACACCCCCCTGGCCCC
519 GGCCAATATAAGGGCCA-AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
** * * ** *
20679839 CCCGATCACCGGAACCCCAATGCGGCTAGTCAGGTTCTCCGACGATGCT
583 CCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
20679888 TGTATTTTGG
Statistics
Matches: 3573, Mismatches: 488, Indels: 217
0.84 0.11 0.05
Matches are distributed among these distances:
855 46 0.01
856 2 0.00
857 112 0.03
858 8 0.00
859 1 0.00
861 1 0.00
862 2 0.00
865 4 0.00
866 2 0.00
867 1 0.00
870 6 0.00
872 1 0.00
873 276 0.08
874 356 0.10
875 128 0.04
876 72 0.02
877 78 0.02
878 39 0.01
879 1 0.00
880 1 0.00
881 8 0.00
882 5 0.00
883 169 0.05
884 7 0.00
885 465 0.13
886 280 0.08
887 3 0.00
888 6 0.00
889 46 0.01
891 23 0.01
892 11 0.00
893 14 0.00
894 1 0.00
898 1 0.00
900 47 0.01
901 409 0.11
902 261 0.07
903 125 0.03
904 551 0.15
905 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAACGGGCAGGCGGGCGG
GCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTCAAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
GATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAT
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCTCCG
ATCTTAGCTGGAATGAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGATCGG
GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCA
Found at i:20681191 original size:26 final size:26
Alignment explanation
Indices: 20681162--20681214 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20681152 CCGATCCCAT
* *
20681162 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20681188 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20681214 C
1 C
20681215 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:20681922 original size:909 final size:884
Alignment explanation
Indices: 20679888--20682429 Score: 3216
Period size: 893 Copynumber: 2.8 Consensus size: 884
20679878 CGACGATGCT
* * *
20679888 TGTATTTTGGTTGGCATGCATAAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGAC
1 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTCGTGAC
20679952 CATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
66 CATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * * *
20680017 CAAATGCCCTTTAAGAGGGAGTGAGTTTTCGAGGTTTGATGAGGGACAAGGGGCCAATATAAGGG
131 CAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AGGTTTGATGAGGGA-TAGGGGCCAATATAAGGG
* * * *
20680082 CCAAGTACTAGCACCCAACGCACATCATGTGCACACACCCCCCCGGCCCCCCCATCGCCAGAACC
194 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCAGAACC
* ** *
20680147 CCAATGCCGCCAGTCAGGTTCTCCGACAATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCA
258 CCAATGCCGCCGGTCAGGTTCTCCG---ATGCTCCGACGATGGTG-CCCGATGAAGAAAAATGCG
* * * * * *
20680212 ACACCAGCACATGCCTGAGCCCAGCATGTGCTACCGTAACCCTCGATCCGATCCGATCTTAGACT
319 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCCATCTTAGACT
** * * *
20680277 CAGAATGAACACCATAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
384 GGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
** * ** ** * * * *
20680342 AATGTGCGGGTGCTCAGCCAACCAGAGGGGTGGGATGCACAAGTCGGGGATCAGCCAGGTCCCCC
448 AGCGTGCGGGCGCTCAG-CGGCCAGAGGGAAGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCC
* * * * *
20680407 T-CTTCGTGCTGTCGATCTTACTGCCACAACCTCGGTCTGGTCTGATCTTAGACTAGGAATGAAC
512 TCCGT-GTGCTGTCGATCCTACT-ACTCAACCTTGGTCTGGTCTGATCTTAGACTAGGAATGAAC
*
20680471 TCCGTATGCCTAAGCCAACCAATGAAACAAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACG
575 TCTGTATGCCTAAGCCAACCAATGAAACAAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACG
**
20680536 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
640 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGT
* * *
20680601 GCCAATGCC-TTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
705 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
20680665 ATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTAAAACATTTTACGGTTCGAGATTTTTT
770 ATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACATTTTACGGTTCGAGATTTTTT
* * * ** * * *
20680730 AAAATTTTTTCGGAAGGTGTTTTGGCCCTAAACTTCTTAGACGTGATCCT
835 AAAATTTCTTCAGAAGGAGTTTTCACCCCAAACTTCGTAGACGTGATCCC
* * * *
20680780 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACAAGAAGTGTACAAGATTTCATCAT
1 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTCGTGAC
* *
20680845 CATTAT-AAAAAAACTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGAAAACCTGTAAAAT
66 CATT-TGAAAAAAA-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
20680909 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGACGAGGGATAGGTGGCCAATATAAG
129 CTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCAGGTTTGATGAGGGATAGG-GGCCAATATAAG
* * *
20680974 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCAGATCGCTAGAAC
192 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCAGAAC
** * *
20681039 CCCAATGCAACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGT
257 CCCAATGCCGCCGGTCAGGTTCTCC---GATGCTCCGACGATGGTGCC-CGATGAAGAAAAATGC
* * *
20681104 GGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCGATCCCATCTTAGAT
318 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCCATCTTAGAC
*
20681169 TGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAAT
383 TGGGAATGAACTCCGTATGCTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* * * * * *
20681234 GAGCGTACGGGCACTCAGTCGGCCAGAAGGAAGGGATACGCAAGCCGAGGATCGGTCGGGTCCCC
447 GAGCGTGCGGGCGCTCAG-CGGCCAGAGGGAAGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCC
* * * * *
20681299 CTCCGTGTGCTATCGATCCTACTATTGCAACCTTGGGTTCT-ATC-AATCTTAGACTCGGAATGA
511 CTCCGTGTGCTGTCGATCCTACTACT-CAACCTT-GG-TCTGGTCTGATCTTAGACTAGGAATGA
** * *
20681362 ACTCTGTATGCCTAAGCCAACTGACGAAACGAGTGGGCGGGTGGGAGAACGGGCGGGCGGGCACT
573 ACTCTGTATGCCTAAGCCAACCAATGAAAC-A-------------AG--CGGGCGGGCAGGCACT
* * * * *
20681427 ACGTTGGCCAGAGAGAGGGGATGCGCAAGCCCTGGACCGATAGGGTGGTAGGTGGGTTTAGGAAC
622 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
20681492 ATCTTCATATTTCTATGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGCTCCCTTAA
687 ATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAA
* *
20681557 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTT
752 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACATTT
* * *
20681622 TACGGTTCGGGATTTTTTAAAATTTCTTCAGAAGGAGTTTTCACCCCAAACTTGGTAGATGTGAT
817 TACGGTTCGAGATTTTTTAAAATTTCTTCAGAAGGAGTTTTCACCCCAAACTTCGTAGACGTGAT
20681687 CCC
882 CCC
* *
20681690 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTGGTGAC
1 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTCGTGAC
* *
20681755 CATTTGAAAAAAATGACCCCATTTCAGACACTTTAACT-GCTACTGGCAGCAAACCTATAAAATC
66 CATTTGAAAAAAATGTCCCCATTTCAGACACTTTAA-TGGCTACTGGCAGCAAACCTGTAAAATC
* *
20681819 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCATGGTTTGATGAGTGATATGGGGACAATATAAGG
130 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-GGTTTGATGAGGGATA-GGGGCCAATATAAGG
* * * * *
20681884 GCCAAGTACCAGCACCCATCGTACACCATGTTCGCACACCCCCCGGCCCCCCCGATCACCGGAAC
193 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCAGAAC
* * *
20681949 CCCAATGCCGCCGGTCAGGTTCTCC-A-------ACGATGCT--CCGACGAAGAAAAATACGGCA
257 CCCAATGCCGCCGGTCAGGTTCTCCGATGCTCCGACGATGGTGCCCGATGAAGAAAAATGCGGCA
* * * * *
20682004 CCAGCACATGCCCAAGCCCAGCATATGCTGCTGCAACCCTCGGTTCG-GCCCGATCTTAGACTGG
322 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCC-ATCTTAGACTGG
* * * *
20682068 GAATGAACTTCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
386 GAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * * *
20682133 CGTGCGGGGCGCTCAGCAGGCCAGAGGGGCA-GGTTGTGCATGCCGGGGATCGGCCGGGTCCCCC
450 CGTGC-GGGCGCTCAGC-GGCCAGA-GGGAAGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCC
* * * * * * *
20682197 TCTGCGTGCTGCCGATGCTGCTACCTAAACCCTTGGCCTGGTCTGATCTTAGACTAGGAATGAAC
512 TCCGTGTGCTGTCGATCCTACTA-CTCAA-CCTTGGTCTGGTCTGATCTTAGACTAGGAATGAAC
20682262 TCTGTATGCCTAAGCCAACCAATGAAACAAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACG
575 TCTGTATGCCTAAGCCAACCAATGAAACAAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACG
*
20682327 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TCGTG
640 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ATG
20682391 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
704 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
20682430 GTCCTTGGGG
Statistics
Matches: 1423, Mismatches: 181, Indels: 102
0.83 0.11 0.06
Matches are distributed among these distances:
881 1 0.00
882 127 0.09
884 2 0.00
892 38 0.03
893 334 0.23
894 144 0.10
895 7 0.00
896 133 0.09
897 70 0.05
898 52 0.04
899 7 0.00
906 1 0.00
907 2 0.00
908 2 0.00
909 243 0.17
910 260 0.18
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTCGTGAC
CATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCAGAACCCCA
ATGCCGCCGGTCAGGTTCTCCGATGCTCCGACGATGGTGCCCGATGAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCCATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
GGCGCTCAGCGGCCAGAGGGAAGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCCGTGTGC
TGTCGATCCTACTACTCAACCTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCT
AAGCCAACCAATGAAACAAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCATTTTCTATTTTTCACAATTTTCAAAACATTTTACGGTTCGAGATTTTTTAAAATTTCTTC
AGAAGGAGTTTTCACCCCAAACTTCGTAGACGTGATCCC
Found at i:20682087 original size:26 final size:26
Alignment explanation
Indices: 20682058--20682110 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20682048 TCGGCCCGAT
20682058 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
20682084 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20682110 C
1 C
20682111 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20683427 original size:26 final size:26
Alignment explanation
Indices: 20683391--20683441 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20683381 TAGTCTGATC
* *
20683391 TTAGACTGGGAATGAACTTCGTATGG
1 TTAGACTGGGAATAAACTTCATATGG
20683417 TTAGACTGGGAATAAACTTCATATG
1 TTAGACTGGGAATAAACTTCATATG
20683442 CCTACGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTTCATATGG
Found at i:20685212 original size:26 final size:26
Alignment explanation
Indices: 20685183--20685235 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20685173 CCAATCCGAT
20685183 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20685209 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20685235 C
1 C
20685236 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20685891 original size:897 final size:898
Alignment explanation
Indices: 20682439--20690047 Score: 9359
Period size: 887 Copynumber: 8.5 Consensus size: 898
20682429 GGTCCTTGGG
* **
20682439 GAAGAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGT
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGT
* * * * * * *
20682504 CTGATCTTGGACTGAGAATGAACTACGTATGCTTAGACAGGGATTGAACTCTGTATGCCTAAGTC
66 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * ** * * *
20682569 AACCCATGAAACGAGCGTGTGGGCACTCAGCCTACTAGAGAGG-GGGATGCGTAAG-C---GA--
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * ** *
20682627 GAT--GCT-CCCCTTTACGTGCTACTGATCCTGC-AGTCGCAACCCTC-AGTCCAATCCGATCTT
196 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACT-GCAACCCTCTA-TCCGGTCTGATCTT
* * ** *
20682687 AGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGCGGGTGGGCAC
259 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCAC
* * * *
20682752 TACGCCGGCTAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCA
324 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
20682817 CATCTTCATATTTCTACGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
389 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
20682882 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATGTTTCATGATTTTTGAAACTTT
454 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
20682947 TTACGGTTTCGG-ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
519 TTACGG-TTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
20683011 ATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
583 ATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
* * *
20683076 GTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAACGG-TAACTGGCAGTAAACCTGTA
647 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT-ACTGGCAGCAAACCTGTA
* * *
20683140 AAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATTAGGGATAGGGGGCCAATA
711 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
20683205 TAAGGTCCAAGTACTAGCACCCATCACACATCATGTGTGCACA--------CCCCCCCAATCGCC
776 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACC
* *
20683262 -GAAACCCCAATG-CGACCGGTCAGGTTCTCCAGCAATGCTCCGGCGATGGTGCCCCGAC
841 AG-AACCCCAATGCCG-CCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
* * * * * * *
20683320 GAAGAAAAATGCGACACCAGCACTTGCCCAAGCCTAGCATGTGCAGCCGCAACCCTCGGTCTAGT
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGT
* * * * * * *
20683385 CTGATCTTAGACTGGGAATGAACTTCGTATGGTTAGACTGGGAATAAACTTCATATGCCTACGTC
66 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
20683450 AACCCACGAAATGAGCATGCGGGCGTTCAGCCGGCCAGAGGGGCGAGATGTGCAAGTCAGGGATC
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
20683515 GGTTGGGTCCCCCTCTGTGTACTGCTGATCCTGCTA-TCGTAACCCT-TCATCTGGTCTGATCTT
196 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACT-GCAACCCTCT-ATCCGGTCTGATCTT
** * * *
20683578 AGACTGGGTCTGAACTCCGTATGCCTAAGCCAACCGATG--A-AA-TGAGCGGGCGGGCGGGCAC
259 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCAC
* * * * *
20683639 TACGCCGACTAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
324 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
20683704 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
389 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
20683769 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATGTTTCATGATTTTTGAAACTTT
454 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* *
20683834 TTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
519 TTACGGTTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
20683899 TCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
584 TCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
* * *
20683964 TGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAACGGCTACTGGCAACAAACCTGTAAA
648 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
20684029 ATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATATA
713 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * **
20684094 AGGACCAAGAACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC--CACCCCCAATCGCTGG
778 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACCAG
* * * * * *
20684156 AACCCCAATGCGGCCGGTTAGGTTCTCCGGTGATGCTCCAGTGATGGTGCACCGAC
843 AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
* * * * * * *
20684212 GAAGAAAAATACGGCACCAGAACATTCCCGAGCCTAGCAAGTGCTG-CTGTAACCCTCGGTCCGG
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCAG
* ** * *
20684276 TCCGATCGTAGACTGCAAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
65 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
20684341 CAATCAACGAAACGAGCGTGCAGGTGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCTC-GGGA
130 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGA
* * * * * * * * * **
20684405 TCGACCGGATGCCCCTCTACGGGCTGCCAATCCTGCTACCGTAACCCT-TGGTTTGGT-TCGATC
194 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCT-ATCCGGTCT-GATC
* *
20684468 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAA-CGGGCAGGCAGGTGGG
257 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AAGCGGGC--G--GGCGGG
* * * *
20684532 CGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGAT
317 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
20684597 TTAGGCACATCTTCATATTTCTGCATGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATGG
382 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
20684662 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
447 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
** * ** *
20684727 AAACTTTTTGTGGCTCGGGGTTTTTTAAATTTTTTTCGAAAGGAGTTTTAGG-CCCAAACTTGGT
512 AAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTT-GGCCCCAAACTTGGT
* **
20684791 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGGAAAAAACTCAAAGTGTACA
576 AGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* *
20684856 AGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGAGAC--TAATGGCTACTGGCAGCAAA
640 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
20684919 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGG
705 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
20684984 CCAATATAAGGGCCAAGTACCAGCACCCATCGCAGATGATGTGCGCACACCCCCCAGCCCCCCCA
770 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCA
* * **
20685049 ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAACGATGGTGCCCCGAC
835 ATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
* * * *
20685113 GAAGAAAAATGCGACAGCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCAAT
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGT
20685178 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
66 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
20685243 AACCCACGAAATGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGTGATGCACAAGCCGGGGATC
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* ** * * *
20685308 GATCGGGACCCCCAATGCATGCTACCAATCCTGCTACTGCAACCCTCTATCCGGTCTGATCTTAG
196 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCTATCCGGTCTGATCTTAG
*
20685373 ACTGGGAATGAACTCCGTATGCGTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTA
261 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTA
* *
20685438 CGTCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
326 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
20685503 TCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAG
391 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
20685568 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTATTT
456 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * *
20685633 ACGGTTCGGAATTTTTTAAAGTTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATC
521 ACGGTTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
** * *
20685698 CTTCCATTTTTCTTGGCATGCACAAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
586 CTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
* *
20685763 CCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
651 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
20685828 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGTG-CAATATAAGG
716 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * **
20685892 GCCAAATACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GAAA
781 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACCAG-AA
* * * * *
20685956 ACCCAATGTCGCCAGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGAC
845 CCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
* * * * * *
20686010 GAAGAGAAATACGTCACCAACACATGCCCAAGCCCAGCATGTGCTATCGCAA----C---CC--T
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGT
* * *
20686066 -CGA---T---CT--G---G---T-CGAAT-CTTAGACTGGGAATCAACTCCGTATGCCTAAGTT
66 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
20686114 AACCCACGAAACAAGCGTGCGGGTGCTCAACCAGCCAGAGGGGCGAGATGGGCAAGCCGGGGATC
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * *** * * *
20686179 GATCGGGTGCCCCTCTACGTGCTACCGATCCTACCGTTGCAACCCT-TGGTCTGGTCTGATCTTG
196 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCT-ATCCGGTCTGATCTTA
*
20686243 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-AGAGCGGGCGGGCTGGCGGGCGG
260 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACA-AGCGGGC--G--GGCGGGCGG
* * * *
20686307 GCACTATGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGAATCGATATGGTGGTAGGTGGGTTTA
320 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
20686372 GGTACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
385 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
20686437 CTTAAGCCTTCACCTGAAGTTTCATAGCAACACGACTTGTTTTCTATTTTTCACGATTTTTGAAA
450 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * *
20686502 CTTTTTGCAGTT-TGAGATTTTTTAAAATTTTTT-GAAAGGAGTTTTGGACCCAAACTTGGAAGA
515 CTTTTTACGGTTCGGA-ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
20686565 CGTGATCCTTCTATTTTTGTTGGCATGCAAAAAAAATTTAGCCAAAAACTCAAAGTGTACAAGAT
579 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
* *
20686630 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTCATGGCTACTGGCAGCAAACCTG
644 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * ** * *
20686695 TAAAATCTCAAATGCTCTTGAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGAAACTGGGTCGA
709 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * ** *
20686760 TATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACACCCCTTGGCCCCCCCGATCA
774 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCA
* * * *
20686825 TCAGAACACCAATGCCACCGGTCAGGTTCTCCGGTGATGC-CACGGCGATGGTGCCCCGAC
839 CCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC-CGGCGATGGTGCCCCGAC
* * * * * *
20686885 AAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGGCACAACCCTCTGTCCAGT
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGT
* * *
20686950 CCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTC
66 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * *
20687015 AACCAACGAAACGAGCGTGCGGGCGCTCAGTTGGCCATAGGGGCGGGATGCGCAAGCCGGGGATA
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** * ** * * *
20687080 GGCCGGATCCCCCTCTGCGTGCTGCTAATCCTGCTACTGTAACCCTC-AGTCTGGTCTAATCTTA
196 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCTA-TCCGGTCTGATCTTA
* * * * ** *
20687144 GACT-GGAATGAACTCCGTATGCCTAAGCCAATCAATGAAACGAGCTAGCAGGCGGGCGGGCACT
260 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACT
* *
20687208 ACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
325 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
20687273 ATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
390 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
20687338 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTTGAAACTTT
455 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAAC-TT
** *** * * * *
20687402 TTTCACTATTTTTCACTATTTTTCACTATTTTTCACTATTTTT-GAAAGGATTTTTGCCCCCAAA
518 TTT-AC---GGTTCGGAATTTTT---TA-----AAAT-TTTTTCGAAAGGAGTTTTGGCCCCAAA
* * * *
20687466 CTTGGTGGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCCAAAAACTCAAAG
570 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCAAAG
20687531 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
634 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
20687596 AGCAAACTTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
699 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
20687661 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCTCACACCAACCCCGG
764 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC--CCCCGG
* * * *
20687726 CCCCCCCGATCACCAGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGTTGCTCCGACGATGGTG
827 CCCCCCCAATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* **
20687791 CCTCGGT
892 CCCCGAC
* * * *
20687798 GAAGAAAAATGCGGCACCAACACATGCCCGAGGCCAGCATGTGCTGTCACAACCCTCGGT-CTGA
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAG-
* * * *
20687862 TCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGAATAAACTCCGTATGCCTAAGT
65 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * ** ** * *
20687927 CAACCAACAAAACGAGCGTACGGGCTTTCAGCCGGCCAGAGGGGATGGATGCACAAGCCAGGGAT
130 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * * * * * *
20687992 CGGCCGGGTCCCCCTCTGTGTGCTGCCAATCTTGCTGCTACAACCCTCTGTCCAGTCTGATCTTA
195 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCTATCCGGTCTGATCTTA
* * *
20688057 GACTGGGAATGAACTTCGTATGCCCAAGCCAACCGACGAAACGAA-----CGGGCGGG-TGGCAC
260 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AAGCGGGCGGGCGGGCGGGCAC
*
20688116 TACGTCGGCCAGAGAGACGGGATGCGCAGGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
324 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * * *
20688181 CATCTTCATATTTTTGCATGCCAATGTCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTA
389 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
20688246 AGCCTTCACGTGAAGTTACATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACATT
454 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * * **
20688311 TTGCAGTTCAGG-ATTTTTTAAAATGTTTTT-GGAAGGTTTTTTGGCCCCAAACTTGGTAGACGT
519 TTACGGTTC-GGAATTTTTTAAAAT-TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* **
20688374 GATCCTTGTATTTTTATTGGCATGCACAAAAACATTCAGCTAAAAACTCCTAGTGTACAAGATTT
582 GATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCAAAGTGTACAAGATTT
*
20688439 TGTGACCATTTGAAACAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
646 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
20688504 AAATCTCAAATG--C--T-A-----TGT--GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
711 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
20688557 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCCCC
776 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACC
* * * **
20688622 AGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGT
841 AGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
* * *
20688680 GAAGAAAAATGC-GCACCAGCACATGCCC-ATGCCCAGCATGTGCTGCCACAACCCTAGGTCCAG
1 GAAGAAAAATGCGGCACCAGCACATGCCCGA-GCCCAGCATGTGCTGTCGCAACCCTCGGTCCAG
* * * * * *
20688743 TCCCAGCCTGGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTTCGTATGCCTAAGT
65 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** * * * * * *
20688808 CAACCCATGAAACGAAAGTGTGGGCACTCAGTCGACCTA-AGGGACGGGATGCGCAAGCTGGGGA
130 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC-AGAGGGGCGGGATGCGCAAGCCGGGGA
* * ** * **
20688872 TCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCCCAACCCTCGATCCGGTCCCATCTT
194 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCTATCCGGTCTGATCTT
* * * *
20688937 AGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACAAAACGAGCGGGCGGGCGGGTGGGCGG
259 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGC----GGGCGG
**
20689002 GCACTACCCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
320 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
** * * * *
20689067 GGCACATCTTCATATTTCTACAAGCCAATGCCTTTTTTATGGCTTCTAAATTCGTACAATTGTCC
385 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
20689132 CTTAAGCATTCACGTTAAGTTT-ATTGGCAAGGCAACTCGTTTTCTATTTTTCATGATTTTTGAA
450 CTTAAGCCTTCACGTGAAGTTTCA-TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * * * * *
20689196 ACCTTTTGCGGTTCGGGATTTTTTTAAATTTTTT-TAGAAGGAGTTTTGGGCCCAAACTTGGTAG
514 ACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAG
* * ** *
20689260 ACATGATCCTTGTATTTTTTTTGGCATGCACGAAAAAATTCATTTAAAAACTCGAAGTGTACAAG
578 ACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
* * *
20689325 ATTTTGTGACCATTTCAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTAATGGCAGCAAACC
642 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
20689390 TCTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCGGGATAGTGGGCC
707 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
20689455 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCCGACCCCCCAGA
772 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCA-A
* * * * * *
20689520 TCGCCAGAACCCCAATACCGCCGATCAAGTTCTCCGACGATACTCCGGCGATGGTGCCCCGAC
836 TCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
* * * ** *
20689583 AAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCTGT
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGT
* * * * *
20689648 CCAATCTTAGACTGAGAATGAACTCTGTGTGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
66 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * ** **
20689713 AACCCACGGAATGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGTTGGATGCATAAGCCGGGGATC
131 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * *
20689778 -AGTCGGGTTCCCCTTCTGTGTGCTGCTGATCCTGCTGCCGCAACCCTC-ATTTCGATTTGATCT
196 GA-TCGGG-TCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCTA-TCCGGTCTGATCT
* ** * * *
20689841 TAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTAACGAAACGAGCGGGTGGGCAGGCGGGCA
258 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGC-GG--
*
20689906 GCCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGTA-GTGGGTT
320 G-CACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
20689969 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTACATTCATACAATGGT
383 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
20690034 CCCTTAAGCCTTCA
448 CCCTTAAGCCTTCA
20690048 TGTGCGCACA
Statistics
Matches: 5844, Mismatches: 729, Indels: 287
0.85 0.11 0.04
Matches are distributed among these distances:
870 2 0.00
871 182 0.03
872 4 0.00
873 2 0.00
874 203 0.03
875 362 0.06
876 2 0.00
879 2 0.00
880 2 0.00
881 377 0.06
882 95 0.02
883 1 0.00
884 79 0.01
885 8 0.00
886 9 0.00
887 485 0.08
888 6 0.00
889 12 0.00
890 354 0.06
891 82 0.01
892 300 0.05
893 5 0.00
894 3 0.00
895 6 0.00
896 431 0.07
897 431 0.07
898 208 0.04
899 7 0.00
900 388 0.07
901 473 0.08
902 91 0.02
903 67 0.01
904 244 0.04
905 144 0.02
907 1 0.00
908 5 0.00
909 185 0.03
910 64 0.01
911 197 0.03
912 2 0.00
913 289 0.05
914 33 0.01
915 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCTATCCGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTA
CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
ACGGTTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACCAGAAC
CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
Found at i:20686984 original size:26 final size:26
Alignment explanation
Indices: 20686955--20687007 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20686945 CCAGTCCGAT
* *
20686955 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20686981 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20687007 C
1 C
20687008 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20687378 original size:896 final size:900
Alignment explanation
Indices: 20686080--20690047 Score: 4991
Period size: 896 Copynumber: 4.4 Consensus size: 900
20686070 CTGGTCGAAT
* * * * * **
20686080 CTTAGACTGGGAATCAACTCCGTATGCCTAAGTTAACCCACGAAACAAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * *
20686145 CAGCCAGAGGGGCGAGATGGGCAAGCCGGGGATCGATCGGGTGCCCCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** *
20686210 TACCGTTGCAACCCTTGGTCTGGTCTGATCTTGGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
20686275 CCGACGAAAAGAGCGGGCGGGCTGGCGGGCGGGCACTATGTCGGCCAGAGAGAAGGGATGCGCAA
196 CCGACG--AA-A-CGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
20686340 GCCGTGAATCGATATGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * *
20686405 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATAGCAACAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
20686470 GACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTGA-GATTTTTTAAAAT-TTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTCACGATTTTTTAAAATATTT
* * * *
20686533 TTGAAAGGAGTTTTGGACCCAAACTTGGAAGACGTGATCCTTCTATTTTTGTTGGCATGCA-AAA
452 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
20686597 AAAATTTAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
20686662 AAGACACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGCGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* ** * * * *
20686727 GTTCTCGAGGTTTGATGAGGGAAACTGGGTCGATATAAGGGCCAAGTACTAGCACCCATCACACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * *
20686792 TCATGTGCGCACACCCCTTGGCCCCCCCGATCATCAGAACACCAATGCCACCGGTCAGGTTCTCC
712 TCATGTGCGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCAATGCCACCGGTCAGGTTCTCC
** * *
20686857 GGTGATGC-CACGGCGATGGTGCCCCGACAAAGAAAAATGTGACACCAGCACATGCCCGAGCCCA
777 GACGATGCTC-CGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
20686921 GCATGTGCTGGCACAACCCTCTGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATG
841 GCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
20686981 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * **
20687046 TGGCCATAGGGGCGGGATGCGCAAGCCGGGGATAGGCCGGATCCCCCTCTGCGTGCTGCTAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
20687111 TGCTACTGTAACCCTCAGTCTGGTCTAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
20687175 TCAATGAAACGAGCTAGCAGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
20687240 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
20687305 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
20687370 CGTTTTCTATTTTTCACTATTTTTGAAACTTTTTTCACTATTTTTCACTATTTTTCACTATTTTT
391 CGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTT-GC-A-GTTTCACGATTTTT---TA-----
* * * * *
20687435 CACTATTTTTGAAAGGATTTTTGCCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGGCA
444 AAATATTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
*
20687500 TGCATAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
509 TGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
20687565 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATACTCTTTAAGG
574 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
20687630 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
639 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
20687695 ATCGCACATGATGTGCTCACACCAACCCCGGCCCCCCCGATCACCAGAACCCCAATGCCACCGGT
704 ATCGCACATCATGTGCGCACACC--CCCCGGCCCCCCCGATCACCAGAACCCCAATGCCACCGGT
* * * * *** *
20687760 CAGGTTCTCCGGCGTTGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGCGGCACCAACACATGC
767 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGC
* * * * *
20687825 CCGAGGCCAGCATGTGCTGTCACAACCCTCGGT-CTGATCTGATCTTAGATTGGGAATGAACTCC
832 CCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCC
20687889 GTATG
896 GTATG
* * * * * * ** *
20687894 CTTAGATTGGGAATAAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCGTACGGGCTTTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
** * * * * * *
20687959 CGGCCAGAGGGGATGGATGCACAAGCCAGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * * *
20688024 TGCTGCTACAACCCTCTGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCCAAGCCAA
131 TGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20688089 CCGACGAAACGAAC--G--GGCGGG-TGGCACTACGTCGGCCAGAGAGACGGGATGCGCAGGCCG
196 CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
20688149 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGTCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* *
20688214 TATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTACATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * * *
20688279 CATTTTTTATTTTTCATGATTTTTGAAACATTTTGCAG-TTCAGGATTTTTTAAAATGTTTTTGG
391 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTCACGATTTTTTAAAATATTTTTGA
** * *
20688343 AAGGTTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAACA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* ** *
20688408 TTCAGCTAAAAACTCCTAGTGTACAAGATTTTGTGACCATTTGAAACAAGTGTCCCCATTTCAGA
521 TTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
20688473 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG--C--T-A-----TGT--GTTC
586 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
20688526 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
651 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * **
20688591 GTGCGCACACCCCCCGGCCCCCTCGATCCCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
716 GTGCGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACG
* ***
20688656 ATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGC-GCACCAGCACATGCCC-ATGCCCAGCAT
781 ATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGA-GCCCAGCAT
* * * * *
20688719 GTGCTGCCACAACCCTAGGTCCAGTCCCAGCCTGGACTGGGAATGAACTCCGTATG
845 GTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
20688775 CTTAGACTGGAAATGAACT-TCGTATGCCTAAGTCAACCCATGAAACGAAAGTGTGGGCACTCAG
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
20688839 TCGACCTA-AGGGACGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAT
65 TCGGCC-AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAT
** * **
20688903 CCTGCTGCCCCAACCCTC-GATCCGGTCCCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
129 CCTGCTGCTGCAACCCTCAG-TCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * * *
20688967 TAACCGACAAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACCCCGGCCAGAGAGACGGGATGCG
193 CAACCGACGAAACGAGCGGGCAGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
**
20689032 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAAGCCAATG
254 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
* * * * * *
20689097 CCTTTTTTATGGCTTCTAAATTCGTACAATTGTCCCTTAAGCATTCACGTTAAGTTT-ATTGGCA
319 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-TGGCA
* * * * * ** *
20689161 AGGCAACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGC-GGTTCGGGATTTTTTTAAAT
383 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTCACGATTTTTTAAAAT
* * *
20689225 -TTTTTTAGAAGGAGTTTTGGGCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGC
448 ATTTTTGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
* *** * *
20689289 ACGAAAAAATTCATTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCC
512 ACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
20689354 TATTTCAGACACTTTAATGGCTAATGGCAGCAAACCTCTAAAATCTCAAATGCCCTTTAAGGGGG
577 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
20689419 TGTGAGTTCTCGAGGTTTGATGCGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
642 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * * *
20689484 GCACATCATGAGCGCACACCCCCCCGACCCCCCAGATCGCCAGAACCCCAATACCGCCGATCAAG
707 GCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCACCAGAACCCCAATGCCACCGGTCAGG
* * *
20689549 TTCTCCGACGATACTCCGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCTGA
771 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * * *
20689614 GCCCAGCATGTGCTACCGCAACCCTCGGTCCTGTCCAATCTTAGACTGAGAATGAACTCTGTGTG
836 GCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20689679 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAATGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
** ** * * * *
20689744 CGGCCAGAGGGGTTGGATGCATAAGCCGGGGATC-AGTCGGGTTCCCCTTCTGTGTGCTGCTGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGG-TCCCCCTCTGCGTGCTGCCGAT
* * * * * *
20689808 CCTGCTGCCGCAACCCTCA-TTTCGATTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGC
129 CCTGCTGCTGCAACCCTCAGTCT-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
** * * *
20689872 CAACTAACGAAACGAGCGGGTGGGCAGGCGGGCAGCCACTACGCTGGCCAGAGAGACGGGATGCG
193 CAACCGACGAAACGAGC----GGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
20689937 CAAGCCGTCGATCGATAGGGTGGTA-GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
254 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
*
20690001 CCATTTTTATGGCTTGTACATTCATACAATGGTCCCTTAAGCCTTCA
319 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
20690048 TGTGCGCACA
Statistics
Matches: 2657, Mismatches: 348, Indels: 121
0.85 0.11 0.04
Matches are distributed among these distances:
880 2 0.00
881 235 0.09
882 84 0.03
883 1 0.00
884 77 0.03
885 3 0.00
886 3 0.00
889 10 0.00
890 355 0.13
891 1 0.00
892 2 0.00
894 2 0.00
895 1 0.00
896 365 0.14
897 6 0.00
898 3 0.00
899 1 0.00
900 37 0.01
901 143 0.05
902 74 0.03
903 80 0.03
904 243 0.09
905 142 0.05
906 1 0.00
907 1 0.00
908 4 0.00
909 192 0.07
910 63 0.02
911 197 0.07
912 3 0.00
913 290 0.11
914 36 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTCACGATTTTTTAAAATATTTTTGA
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
TTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACG
ATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20687391 original size:10 final size:10
Alignment explanation
Indices: 20687376--20687444 Score: 104
Period size: 10 Copynumber: 6.8 Consensus size: 10
20687366 GACTCGTTTT
20687376 CTATTTTTCA
1 CTATTTTTCA
*
20687386 CTATTTTTGAAA
1 CTATTTTT--CA
20687398 CT-TTTTTCA
1 CTATTTTTCA
20687407 CTATTTTTCA
1 CTATTTTTCA
20687417 CTATTTTTCA
1 CTATTTTTCA
20687427 CTATTTTTCA
1 CTATTTTTCA
20687437 CTATTTTT
1 CTATTTTT
20687445 GAAAGGATTT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
9 3 0.06
10 43 0.80
11 5 0.09
12 3 0.06
ACGTcount: A:0.20, C:0.17, G:0.01, T:0.61
Consensus pattern (10 bp):
CTATTTTTCA
Found at i:20687414 original size:31 final size:30
Alignment explanation
Indices: 20687376--20687444 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 30
20687366 GACTCGTTTT
20687376 CTATTTTTCACTATTTTTGAAACT-TTTTTCA
1 CTATTTTTCACTATTTTT--AACTATTTTTCA
*
20687407 CTATTTTTCACTATTTTTCACTATTTTTCA
1 CTATTTTTCACTATTTTTAACTATTTTTCA
20687437 CTATTTTT
1 CTATTTTT
20687445 GAAAGGATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
29 3 0.08
30 15 0.42
31 18 0.50
ACGTcount: A:0.20, C:0.17, G:0.01, T:0.61
Consensus pattern (30 bp):
CTATTTTTCACTATTTTTAACTATTTTTCA
Found at i:20687904 original size:26 final size:26
Alignment explanation
Indices: 20687868--20687920 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20687858 CTGATCTGAT
*
20687868 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATAAACTCCGTATG
20687894 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGATTGGGAATAAACTCCGTATG
20687920 C
1 C
20687921 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATAAACTCCGTATG
Found at i:20690248 original size:26 final size:26
Alignment explanation
Indices: 20690211--20690262 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20690201 CGGTCCGATC
20690211 TTAGACTAGGAATGAACTCCATACGA
1 TTAGACTAGGAATGAACTCCATACGA
*
20690237 TTAGACTGGGAATGAACTCCATACGA
1 TTAGACTAGGAATGAACTCCATACGA
20690263 GCGTGCGGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATACGA
Found at i:20691981 original size:26 final size:26
Alignment explanation
Indices: 20691941--20691993 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20691931 CCAGTCCGAT
*
20691941 CTTAGACTGGTAATGAACTTCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
20691967 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGTAATGAACTCCGTATG
20691993 C
1 C
20691994 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:20692875 original size:26 final size:26
Alignment explanation
Indices: 20692846--20692898 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20692836 CTGATCCAAT
20692846 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20692872 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20692898 C
1 C
20692899 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20693722 original size:26 final size:26
Alignment explanation
Indices: 20693693--20693745 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20693683 CCGATCCGAT
*
20693693 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20693719 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20693745 C
1 C
20693746 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20694729 original size:902 final size:899
Alignment explanation
Indices: 20691080--20692916 Score: 2274
Period size: 904 Copynumber: 2.0 Consensus size: 899
20691070 GATCCGATCA
* * * *
20691080 TAGAATGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCTCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CG
* * * ** * * ** *
20691145 GCCAGAGGGGCGAGATGCACAAGCCGAGGATCGCCCGAGTCCCCCTCTACGTGCTACCGATCCAA
65 GCCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTC-AGGCCCCCTCTGCGTGCTGTCGATCCTA
* ** * * * *
20691210 CTGTCACAACCCTCGA-TCCGGTCTGATCTTAGACTAGGAATAAAGCT-CGCATGCCTAAGCGAA
129 CTATTGCAACCCTC-ATTCCGGTCTGATCTTAGACTGGGAATGAA-CTCCGTATGCCTAAGCCAA
* * * *
20691273 CCGATG-AA--A--TGA------GC-GGCGGGCACTAC-ACAGCCAGAGAGACGGGATGCGCAAG
192 CCGACGAAACGAGCAGACGGGCGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
**
20691325 CAATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
20691390 TTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * ** *
20691455 ACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCAAGA-TTTTTAAAATTTTTTT
387 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
*** * *
20691519 GGAAGGAGTTTTGGCTAAAAACTTGGTAGACATGATCCTTGTATTTTCGTTGGCATGCACAAAAA
452 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCACAAAAA
*
20691584 AATTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20691649 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
20691714 TCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
20691779 ATGTGCGCACGCCCCCCCGGCGCCCCCGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCG
712 ATGTGCGCAC-ACCCCCCGGC-ACCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * *
20691844 GCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGG
775 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * *
20691909 AAGTGCT-ATCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGTAATGAACTTCGTATGCT
840 ATGTGCTGCT-GCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
20691969 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACAAGCGTGCGGGCGCTCAGTAG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CG
* * * *
20692034 GCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCTTCTGCGTGCTGTCGATCCTG
65 GCCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCAGG-CCCCCTCTGCGTGCTGTCGATCCTA
* * *** * *
20692099 CTATGGTAACCCTTGGTCTGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
129 CTATTGCAACCCTCATTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * ** * *
20692164 GACGAAATGAGCGGACGAGCGG-GTTGGCGGGCACTACACCGACCAGAGAGACGAGATGCGCAAG
194 GACGAAACGAGCAGACGGGCGGCG--GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* **
20692228 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
20692293 TTTTATGGCTTGTAAAGTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * * *
20692358 ACTCGTTTTCTCTTTTTCACGATTTTTGAAAATTTTTTCGGTTCGGAATTTCTTAAAAAATTTTT
387 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTT-TTTAAAATTTTTT
** * * * **
20692423 -ATAAGGAGTCTGGGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTTTTTGGCATGCACAAAA
451 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCACAAAA
*
20692487 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
20692552 AGACACTTTAATGGATACTGGCAGCAAACCTGTAAAATCTTAAATGCTTTTTACGGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
20692617 TTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCAAAGAACCAGCACCGATCACACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
20692682 CATGTGCGCACACCCTCCCCGG-ACCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
711 CATGTGCGCACA-CC-CCCCGGCA-CCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * * * *
20692746 CTGACGAAGCTCCAGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCT
772 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
20692811 AGCATGTGCTGCCGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCT
837 AGCATGTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
*
20692874 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
20692917 TGAGTGGTGA
Statistics
Matches: 816, Mismatches: 107, Indels: 34
0.85 0.11 0.04
Matches are distributed among these distances:
888 3 0.00
889 160 0.20
890 2 0.00
892 1 0.00
894 2 0.00
900 1 0.00
902 12 0.01
903 183 0.22
904 253 0.31
905 199 0.24
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGG
CCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCAGGCCCCCTCTGCGTGCTGTCGATCCTACT
ATTGCAACCCTCATTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCAGACGGGCGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCACCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
Found at i:20695166 original size:897 final size:896
Alignment explanation
Indices: 20691080--20697183 Score: 7004
Period size: 897 Copynumber: 6.9 Consensus size: 896
20691070 GATCCGATCA
* * * *
20691080 TAGAATGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCTCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CG
* * * ** * * ** *
20691145 GCCAGAGGGGCGAGATGCACAAGCCGAGGATCGCCCGAGTCCCCCTCTACGTGCTACCGATCCAA
65 GCCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTC-AGGCCCCCTCTGCGTGCTGTCGATCCTA
* * * *
20691210 CTG-TCACAACCCTCGA-TCCGGTCTGATCTTAGACTAGGAATAAAGCT-CGCATGCCTAAGCGA
129 CTGCT-ACAACCCTC-ATTCCGGTCTGATCTTAGACTGGGAATGAA-CTCCGTATGCCTAAGCCA
* * * * *
20691272 ACCGATGAAA--TG-A-----GC-GGCGGGCACTACAC-AGCCAGAGAGACGGGATGCGCAAGCA
191 ACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCC
* *
20691327 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
20691392 TTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
321 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * ** *
20691457 TTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCAAGA-TTTTTAAAATTTTTTTGG
386 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
*** * *
20691521 AAGGAGTTTTGGCTAAAAACTTGGTAGACATGATCCTTGTATTTTCGTTGGCATGCACAAAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCACAAAAAAA
*
20691586 TTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
20691651 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
20691716 TCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
20691781 GTGCGCACGCCCCCCCGGCGCCCCCGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGGC
711 GTGCGCAC-ACCCCCCGGC-ACCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* * * *
20691846 GATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGGAA
774 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
20691911 GTGCT-ATCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGTAATGAACTTCGTATGCT
839 GTGCTGCT-GCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
20691969 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACAAGCGTGCGGGCGCTCAGTAG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CG
* * * *
20692034 GCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCTTCTGCGTGCTGTCGATCCTG
65 GCCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCAGG-CCCCCTCTGCGTGCTGTCGATCCTA
* *** * *
20692099 CTATGGT--AACCCTTGGTCTGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
129 C--TGCTACAACCCTCATTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * *
20692162 CCGACGAAATGAGCGGACGAGCGGGTTGGCGGGCACTACACCGACCAGAGAGACGAGATGCGCAA
192 CCGACGAAACGAGC--A-G-GCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* *
20692227 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCA
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * *
20692292 TTTTTATGGCTTGTAAAGTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
318 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * * *
20692357 GACTCGTTTTCTCTTTTTCACGATTTTTGAAAATTTTTTCGGTTCGGAATTTCTTAAAAAATTTT
383 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTT-TTTAAAATTTTT
** * * * **
20692422 T-ATAAGGAGTCTGGGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTTTTTGGCATGCACAAA
447 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCACAAA
*
20692486 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
20692551 CAGACACTTTAATGGATACTGGCAGCAAACCTGTAAAATCTTAAATGCTTTTTACGGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
20692616 GTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCAAAGAACCAGCACCGATCACACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
20692681 TCATGTGCGCACACCCTCCCCGG-ACCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
707 TCATGTGCGCACA-CC-CCCCGGCA-CCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * * *
20692745 TCTGACGAAGCTCCAGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCC
768 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
20692810 TAGCATGTGCTGCCGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCT
833 CAGCATGTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
20692874 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGTGGTGAAC-GGC-CT--G
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-CGTG--CGGGCGCTCAG
* ****** * * * ** * * * * * * *
20692935 -GTCCCCCTCTGCGTGCTG-TCATTCC---TAT--TTC-TGCAACCCTC-G-ATCCGGTCTGATC
63 CGGCCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCAGGC-CCCCTCTGCGTGCTGTC-GATC
* * * * * * **
20692990 TTAGACTG-GA-AA---TGAACTCC-GTATG--CCTA-A--GCCAATCG-A---CG-A-----AA
126 CT--ACTGCTACAACCCT-CATTCCGGTCTGATCTTAGACTGGGAAT-GAACTCCGTATGCCTAA
* * * ** * * *** * * * *** * *
20693034 -CGAGCGGACG-GGCGGGCGGGCACTAC-GTCGGCCA-GA-G-AAACGAGA-TG-C---AT----
187 GCCAACCGACGAAACGAGCAGGC-GGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
* * * *
20693084 AAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTCCCAATGC
251 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
20693149 CATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
316 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * *
20693214 ACGACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTT
381 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * *
20693279 TTCAGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTA-CTAGCATGCACA
446 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTAGTTGGCATGCACA
* * * *
20693343 AAAAAATTCAGCTAGAAACTCGGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCGCAT
510 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
20693408 TTCATACACTGTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
575 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * **
20693473 GAGTTCTCGAGGTTTGCTGAGGGATA-AGGGCCAACATAAGGGTGAAGTACCAGCACCCATCGCA
640 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
20693537 CATCATGTGTGCACA-CCCCC--CA-----ATCGCCAGAACCCCAATGCCGTGGGTCAGGTTCTC
705 CATCATGTGCGCACACCCCCCGGCACCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* *
20693594 CGGCGATGCTCCGGCGATGGTGCCCCTG-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCT
770 CGGCGATGCTCCGGCGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
20693658 AGCATGTGCTGCTGCCACCCTCGATCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCT
834 AGCATGTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
20693721 TAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CG
* * * **
20693786 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCAGGCCCCCTCTATGTGCTGTCGATCCTAC
65 GCCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCAGGCCCCCTCTGCGTGCTGTCGATCCTAC
* ** *
20693851 T-CTTGCAACCCTCATTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACC
130 TGC-TACAACCCTCATTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
20693915 GACGAAATGAGCAGACGGGCGAGCGGGCGAGCACTACG-TCGGCCAGAGAGACGGGATGCACTAG
194 GACGAAACGAGC--A--GGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG
**
20693979 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCACGCCAATGCCAT
254 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
20694044 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
319 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
20694109 ACTCGTTTTCTATTTTTGATGATTTCTGAAACCTTTTGCGGTTCGGGATTTTTTTAAAAGTTTTT
384 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTT
* * *
20694174 CGGAAGAAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTAGTTGGCACGCACAAAA
448 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCACAAAA
20694239 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
513 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
20694304 AGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
578 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
20694369 TTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
643 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
20694434 CTTGTGTGCACACCCCCCGGCACCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGG
708 CATGTGCGCACACCCCCCGGCACCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
** * * *
20694499 CGATGCTCCAACGATGGTGCCCCTG-CGAAGAAAAATGCGACGCCAGCACATGCTCGAGCCCAGC
773 CGATGCTCCGGCGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
20694563 ATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGGATGAACTCCGCATGCT
837 ATGTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
20694623 TAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CG
* * * *
20694688 GCCAAAAGGGCGGGATGCACAAGTCGGGGATCGGTCAGGCCCCCTATGCGTGCTGCCGATCCTAC
65 GCCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCAGGCCCCCTCTGCGTGCTGTCGATCCTAC
* * *
20694753 TGCTACAACCCTCATTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAAGCCAACCG
130 TGCTACAACCCTCATTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *
20694818 ACGAAACGAGCAGG-GGGCGGGCGGGCATTACGCTGGCCAGTGAGACGGGATGCGCAAGCCCTGG
195 ACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
20694882 ATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTACGTGCCAAAGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
20694947 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
20695012 TTTCTATTTTTCATGATTTCTGAAACCTTTTGCGGTTCGGGATTTTTTTAAAAGTTTTTCGGAAG
390 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAG
* * *
20695077 AAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTAGTTGGCACGCACAAAAAAATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCACAAAAAAATTC
20695142 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
20695207 TTTAATGGCTATTGGCACGCAAACCTAT-AAATCTGAAATG-TCTGTTAA-GGGGTGTGAGTTTC
584 TTTAATGGCTACTGGCA-GCAAACCTGTAAAATCTCAAATGCTCT-TTAAGGGGGTGTGAG-TTC
* *
20695269 TCGAGGGTTTGATGAGTGATA-GGGGCC-ATATAAGGGCCAAGTACCGGCACCCATCGCACATCA
646 TCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
20695332 TGTGTGCACA---CCCGGCCCCCCGA-CGTCGGAACCCCAAT---G-C-G--A---CCT-CGG-G
710 TGTGCGCACACCCCCCGGCACCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
*
20695381 -T-CTCC--AG-TGGTG-CCCGA-G-AG-AAAATGC-GCA-CAGCACATG-CC--GCCCAGCATG
775 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
20695432 TGCTGCTGTAACCCTC-ATCCAG-CCAATCTTAGACT-GGAATGAACTCCGTATGCT
840 TGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
20695486 TAGACTGGGAATGAACT-CATATGCCTAAGTCAA-CCATGAAACGAGCGTGCGGGC-CTCAGCGG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGG
* * * * *
20695548 CC--AAGGGCGGGATGCGCAAGTC-GAGATCGATC--GCCCCCTCT-CTTGTGCTGCCGATCC--
66 CCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCAGGCCCCCTCTGC--GTGCTGTCGATCCTA
* *
20695605 C-GCTAACGTAACCCTC-GTCTGGTCT-ATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
129 CTGCT-AC--AACCCTCATTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20695666 ACCGATGAAACAAGC-GGCTGGGCGGGCGGGCACTACGCCGGCCAGTGAGACGGGATGCGCAAGC
191 ACCGACGAAACGAGCAGGC-GGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC
* * * *
20695730 CGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAAAGCCATT
255 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
*
20695795 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGA
320 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * *
20695860 CTCGTTCTC-ATTTTTTTACGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTC
385 CTCGTTTTCTA-TTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * * * **
20695924 AGAAGGAGTTTTGGACCCAAGCCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
449 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCACAAAAA
* * * *
20695989 CATTCAGCTAAAAACTCAAAGTGTACAAGCTTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCA
514 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20696054 GACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGT
579 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
20696119 TCTCAAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
644 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * * *
20696184 ATGGGCGCACACCCCGTCCGGCCCCCCGATTGCCGAAACCCCAATGCCCGCCGGTTAGGGCTCTC
709 ATGTGCGCACACCCC--CCGGCACCCCGATCGTCGGAACCCCAATG-CCGTCGGTCA-GGTTCTC
* * * *
20696249 CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAATTACGACACCAGCACATGCCCGAGCCCA
770 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * * * * **
20696314 GTATGTGCTACCGTAACTCTGCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCT
835 GCATGTGCTGCTGCAACCCT-CGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
20696377 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGGCGGTCGCTCAGCC
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-GCGGGCGCTCAG-C
* * * * * * * *
20696442 GACCAAAGAGGGC-GGATGCGCAAAGCCGAGGATCGGCCGGGTCCCCCTCTGGCGTGCTATTGGA
64 GGCCAGA-AGGGCGGGATGCAC-AAGCCGGGGATCGGTCAGG-CCCCCTCT-GCGTGCT-GTCGA
** * * *
20696506 TCCTGTTGCTATAA-CCTCAGTT-CGGATCCGATCTTAGGACTGGGAATGAACTCTGTATGCCTA
124 TCCTACTGCTACAACCCTCA-TTCCGG-TCTGATCTTA-GACTGGGAATGAACTCCGTATGCCTA
* * * *
20696569 AGCCAA-CAACGAAAACGAGAGGCCGGGCGGGCGGGCGGGCACTACG-TCGACCAGAGAGACAGG
186 AGCCAACCGACG-AAAC--GA-G-CAGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGG
* *
20696632 ACTGCGCAAGCCGCTGGGTCGAGTAGGGTGGTAGGTGGGTTTGAGGCACATC-TCATATTTCTGT
245 A-TGCGCAAGCCG-TGGATCGA-TAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGC
20696696 GTGCC-ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
306 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * *
20696760 TCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTATGCGGTTCAGGA-TTT
371 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
* *
20696824 TTGAAATTTTGTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
436 TTAAAATTTT-TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTT
* * *
20696889 GGCATGCACAAAAAAATTCAGCTAAAAAGTTGAACTGTACAAGATTTTGTGACCATTTGAAAAAA
500 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
20696954 GTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTG
565 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * *
20697019 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG-AAATATAAGGGCCAACTACCAGT
630 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* *
20697082 ACCCATCGCACATGTAAAATGTGCGCACA-CCCCCGGC-CCCCGAACGTCGGAACCCCAATGCCG
695 ACCCATCGCACA--T--CATGTGCGCACACCCCCCGGCACCCCGATCGTCGGAACCCCAATGCCG
* *
20697145 -CTGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
756 TC-GGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
20697184 GACNNNNNNN
Statistics
Matches: 4475, Mismatches: 530, Indels: 399
0.83 0.10 0.07
Matches are distributed among these distances:
844 1 0.00
845 3 0.00
846 5 0.00
847 187 0.04
848 2 0.00
850 9 0.00
851 30 0.01
852 220 0.05
853 270 0.06
854 19 0.00
855 27 0.01
856 17 0.00
857 28 0.01
858 72 0.02
859 380 0.08
860 12 0.00
861 20 0.00
862 18 0.00
863 38 0.01
864 13 0.00
865 9 0.00
866 26 0.01
867 2 0.00
868 8 0.00
869 10 0.00
870 2 0.00
871 17 0.00
872 6 0.00
873 3 0.00
874 6 0.00
875 19 0.00
876 11 0.00
877 3 0.00
878 9 0.00
879 7 0.00
880 10 0.00
881 6 0.00
882 9 0.00
883 8 0.00
884 10 0.00
885 4 0.00
886 5 0.00
887 23 0.01
888 8 0.00
889 169 0.04
890 11 0.00
891 42 0.01
892 203 0.05
893 240 0.05
894 65 0.01
895 15 0.00
896 64 0.01
897 406 0.09
898 39 0.01
899 9 0.00
900 7 0.00
901 5 0.00
902 355 0.08
903 200 0.04
904 263 0.06
905 205 0.05
906 12 0.00
907 13 0.00
908 31 0.01
910 32 0.01
911 8 0.00
912 82 0.02
913 34 0.01
914 317 0.07
915 37 0.01
916 19 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGG
CCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCAGGCCCCCTCTGCGTGCTGTCGATCCTACT
GCTACAACCCTCATTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCACCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
TGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
Found at i:20695508 original size:25 final size:25
Alignment explanation
Indices: 20695459--20695509 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
20695449 TCCAGCCAAT
*
20695459 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCATATG
20695484 CTTAGACTGGGAATGAACT-CATATG
1 CTTAGACT-GGAATGAACTCCATATG
20695509 C
1 C
20695510 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:20696399 original size:26 final size:26
Alignment explanation
Indices: 20696349--20696401 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20696339 CTGGTCTGAT
**
20696349 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20696375 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20696401 C
1 C
20696402 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20699921 original size:26 final size:26
Alignment explanation
Indices: 20699885--20699936 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20699875 CAATCTGATT
*
20699885 TTAGACTGGGAATGAACTCCCTATGC
1 TTAGACCGGGAATGAACTCCCTATGC
*
20699911 TTAGACCGGGAATGAACTCCGTATGC
1 TTAGACCGGGAATGAACTCCCTATGC
20699937 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACCGGGAATGAACTCCCTATGC
Found at i:20701711 original size:26 final size:26
Alignment explanation
Indices: 20701668--20701720 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20701658 TTGGTCCGAT
* *
20701668 CTTAGATTGGGAACGAACTCTGTATG
1 CTTAGACTGAGAACGAACTCTGTATG
*
20701694 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAACGAACTCTGTATG
20701720 C
1 C
20701721 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAACGAACTCTGTATG
Found at i:20704362 original size:26 final size:26
Alignment explanation
Indices: 20704326--20704377 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20704316 CAGTCCGATT
* *
20704326 TTAGACTGGGAATGAATTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20704352 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20704378 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20705255 original size:26 final size:26
Alignment explanation
Indices: 20705226--20705278 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20705216 CCGGCCCGAT
*
20705226 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
20705252 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
20705278 C
1 C
20705279 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:20706138 original size:26 final size:26
Alignment explanation
Indices: 20706109--20706158 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20706099 CCAGTCCGAT
*
20706109 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20706135 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
20706159 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20709037 original size:26 final size:26
Alignment explanation
Indices: 20709000--20709049 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20708990 TGGTCTGATT
20709000 TTAGACTAGGAATGAACTCCGTATTC
1 TTAGACTAGGAATGAACTCCGTATTC
*
20709026 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTAGGAATGAACTCCGTAT
20709050 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATTC
Found at i:20710840 original size:26 final size:26
Alignment explanation
Indices: 20710804--20710856 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20710794 CTGGTCTGAT
*
20710804 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20710830 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20710856 C
1 C
20710857 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20711245 original size:897 final size:893
Alignment explanation
Indices: 20708411--20711937 Score: 4880
Period size: 898 Copynumber: 3.9 Consensus size: 893
20708401 AGAAAAATGC
* * *
20708411 GGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGGT-
1 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA-TGGTC
*
20708475 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-TTCGTTTTCTATTTTTCATGATTTTTGA
65 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT-GTTTTCTATTTTTCACGATTTTTGA
** *
20708539 AACTTTTTACGGTTTGGGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCTGCAAACTTGGTAG
129 AACTTTTTACGGTTCAGGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGGC-CCAAACTTGGTAG
* *
20708604 ACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
193 ACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
20708669 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
257 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
* *
20708734 CTATCAAAT-TGCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
322 CTGTAAAATCT-CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
*
20708798 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGTGCACACCCCGCCCGGCCCCCC
386 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCACA-CCC-CCCGGCCCCCC
* *
20708863 CGATCGCCGGAACCCCAATGCCGCCGGTTAGGCTCTCCGGCGATGTTCCGGCGATGGTGCCCCGA
449 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGCTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * *
20708928 CGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTACCGTAATCCTCGATCTGG
514 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGG
* * * *
20708993 TCTGATTTTAGACTAGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
579 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * * * *
20709058 CAACCCACGAAACGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGAT
644 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGAGGCGGGATGCGCAAGCCGAGGAT
* * *** ** *
20709123 CGGCTGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCGTAA-CCTCAGTTTGATTCGATCTTA
709 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAGTCCGATCCGATCTTA
* * *
20709187 GACTGGG-ATGAACTCCGTATGCCTGAGCCAACCGATGAAACGAGCAGTCGGCCGGGCGGTCGGG
774 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-AG-CGACC--G-GG-CGGG
* *
20709251 CACTACGTCGGCCAAGAGAGACGAGACGCGCCGAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
831 CACTACGTCGACC-AGAGAGACG-GACGTG-C-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
20709316 TA
892 TA
* * *
20709318 GGCACATCTTAATATTTCTGTATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
20709383 CTTAAGCCTTCACGTGAAGTTTCATGGCAA-ATGACTTGTTTTCTATTTTTCACAATTTTTGAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAA
* ** *
20709447 CTTTTTACGGTTCAGGATTTTTTAAAAATTTTTTTGGAAGGATTTTTGGCCTCAAACTTGGTAGA
131 CTTTTTACGGTTCAGGA-TTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCC-CAAACTTGGTAGA
* * * *
20709512 CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGGTAAAACCTCGAACTGTACAAGA
194 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
20709577 TTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACC
259 TTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACC
*
20709642 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
323 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * * * * *
20709707 TATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCTCGAA
388 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCACACCCCCCGGCCCCCCCGAT
* * * *
20709772 CGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGTGATGCTCCGGGGATAGTGCCCC-AGCGA
453 CGCCGGAACCCCAATGCCGCCGGTCAGGCTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGA
* * * * ** * *
20709835 AGAGAAATGCGGCACCAGCACATGCCTGAGCCCTGCATGTGCGACCGTAA-CCTCGGTCCAGACC
517 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCT
* * * *
20709899 AATCTTAGACTGGTAATG-ACTCCGTATGCTTAGACTGGGAGTGAACTCTATATGCCTAAGTCAA
582 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* * * *
20709963 CCCATGAGACGAGCGTGCGGAGCGCT-AAGCCGGCC-AAGAGGTGCGGGACGCGCAAGTCGAGGA
647 CCCACGAAACGAGCGTGCGG-GCGCTCAA-CCGGCCAAAGA-G-GCGGGATGCGCAAGCCGAGGA
** * * * * * *
20710026 TCGATCGGGTCCCCTTCTGTGTGCTGCCAAT-CT-C-GCTAACGTAACCCTCGGTCCGGTCTGAT
708 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT-AC--AACCCTCAGTCCGATCCGAT
* * * * *
20710088 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGGTCGGGCGGGTGGG
770 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GAC---CGGGCGGG
* * * *
20710153 CACTAC-ACTGACCAGTGAGACGGGATGTGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTA
831 CACTACGTC-GACCAGAGAGAC-GGACGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
20710217 GGCACATCTTCACATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
20710282 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTCTC-ATTTTTTCACGATTTTTGAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA-TTTTTCACGATTTTTGAA
* * * *
20710346 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGACCCAAGCCTGGTAGA
130 ACTTTTTACGGTTCAGGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGA
* * *
20710411 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGC
194 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
20710476 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAAAGGCTATTGGCAGCAAACCT
259 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCT
* *
20710541 GTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGTGGCCA
324 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
*
20710606 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGGGCGCACACCCCGTCCGGCCCCCCCGA
389 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCACACCCC--CCGGCCCCCCCGA
* * * *
20710671 TTGCCGAAACCCCAATGCCGCCGGTTAGGCTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGA
452 TCGCCGGAACCCCAATGCCGCCGGTCAGGCTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGA
* * * *
20710736 AGAAAATTACGACACCAGCACATGCCCGAGCCCAGTATGTGCTACCGTAACCCTCGGTCTGGTCT
517 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCT
**
20710801 GATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
582 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* *
20710866 CCCACGAAACGATCGTGCGGTCGCTCAACCGGCCAAAGAGGCGGGATGCGCAAGCCGAGGATCGG
647 CCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGAGGCGGGATGCGCAAGCCGAGGATCGG
* * * *
20710931 CCGGGTCCCCCTCTGCGTGCTACTGATCCTGTTGCTACAACCCTCAGTTCGATCCGATCTTAGAC
712 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAGTCCGATCCGATCTTAGAC
20710996 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGACCGGGCGGGCACTACGTCGA
777 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGACCGGGCGGGCACTACGTCGA
* *
20711061 CCAGAGAGACAGGACGTGCAAGCCGTGGGTCGATAGGGTGGTAGGTGAGTTTA
842 CCAGAGAGAC-GGACGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
20711114 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
20711179 CTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
20711244 CTTTATGCGGTTCAGGATTTTTGAAAATTTGTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
131 CTTTTTACGGTTCAGGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGAC
* * *
20711309 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAAGTTGAAGTGTACAAGAT
195 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
20711374 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTG
* *
20711439 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
20711504 TATAAGGGCCAACTACCAGTACCCATCGCACATGTAAAATGTGCGCACAGCCCCCGG-CCCCCCG
390 TATAAGGGCCAAGTACCAGCACCCATCGCACA--T--CATGGGCGCACACCCCCCGGCCCCCCCG
* * * * *
20711568 ATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
451 ATCGCCGGAACCCCAATGCCGCCGGTCAGGCTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
** * * * * * *
20711633 AAGAAAAATGCGGCACCAGCACATGCTTGCGGCCAGCATGTGCTGCCGCAACCCTCAGTCTGATC
516 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTC
*
20711698 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTGC-GTATGCCTAAGTC
581 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CTGTATGCCTAAGTC
* * * * *
20711762 AACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGATGCGCAAGCCTG-GGAT
645 AACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGAGGCGGGATGCGCAAGCC-GAGGAT
* * * ** * *
20711826 CGGCCGGGTCCCCCTCTGCATGCTGCCTATCCTGCTGCTGCAACCCTTGGTCCGGTCCAATCTTA
709 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAGTCCGATCCGATCTTA
20711891 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
774 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
20711938 TGCGGGTGCT
Statistics
Matches: 2314, Mismatches: 262, Indels: 97
0.87 0.10 0.04
Matches are distributed among these distances:
897 447 0.19
898 486 0.21
899 242 0.10
900 78 0.03
901 213 0.09
902 118 0.05
903 109 0.05
904 131 0.06
905 53 0.02
906 143 0.06
907 293 0.13
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCAGGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCACACCCCCCGGCCCCCCCGATCGC
CGGAACCCCAATGCCGCCGGTCAGGCTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGAGGCGGGATGCGCAAGCCGAGGATCGGCCGG
GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAGTCCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGACCGGGCGGGCACTACGTCGACCAG
AGAGACGGACGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
Found at i:20711739 original size:26 final size:26
Alignment explanation
Indices: 20711702--20711754 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20711692 CTGATCTGAT
*
20711702 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
20711728 CTTAGACCGGGAATGAACTGCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
20711754 C
1 C
20711755 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:20712033 original size:159 final size:159
Alignment explanation
Indices: 20711728--20712090 Score: 476
Period size: 159 Copynumber: 2.3 Consensus size: 159
20711718 ACTCCGTATG
* * * *
20711728 CTTAGACCGGGAATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
20711793 AGGCCAGAGGGGCAGGATGCGCAAGCCTGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCTATCC
66 AGACCAGAGGGGCAGGATGCGCAAGCAGGGGATCGACCGCGTCCCCCTCTACATGCTACCGATCC
*
20711858 TGCTGCTGCAACCCTTGGTCCGGTCCAAT
131 TGCTGCCGCAACCCTTGGTCCGGTCCAAT
*
20711887 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGC
* * *
20711952 CGACCAGAGGGGCGGGATGCGCAAGCAGGGGATCGACCGCGTCCCCTCTCTACGTGCTACCGATC
66 AGACCAGAGGGGCAGGATGCGCAAGCAGGGGATCGACCGCGTCCCC-CTCTACATGCTACCGATC
* * ***
20712017 TTGCTGCCGCAA-CCTTGGTCCTGTTTGAT
130 CTGCTGCCGCAACCCTTGGTCCGGTCCAAT
* * * *
20712046 CTTACAGTTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
20712091 TGAGTGAGCG
Statistics
Matches: 177, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
159 153 0.86
160 24 0.14
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGC
AGACCAGAGGGGCAGGATGCGCAAGCAGGGGATCGACCGCGTCCCCCTCTACATGCTACCGATCC
TGCTGCCGCAACCCTTGGTCCGGTCCAAT
Found at i:20712791 original size:26 final size:26
Alignment explanation
Indices: 20712762--20712814 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20712752 TTGATCTGAT
*
20712762 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
*
20712788 CTTAGACTGGAAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
20712814 C
1 C
20712815 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:20714056 original size:897 final size:894
Alignment explanation
Indices: 20711901--20715506 Score: 4387
Period size: 895 Copynumber: 4.0 Consensus size: 894
20711891 GACTGGGAAT
* * * * * *
20711901 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCG
1 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * * *
20711966 GGATGCGCAAGCAGGGGATCGACCGCGTCCCCTCTCTACGTGCTACCGATCTTGCTGCCGCAACC
66 GGATGCGCAAGCCGAGGATCGGCCGGGTCCCC-CTCTACGTGCTGCCGATCCTACTGCCGCAACC
** * ** * * * * *
20712031 TTGGTCCT-GTTTGATCTTACAGTTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGAG
130 TCAGT-TTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-CA-
* * * * * *
20712095 TGAGCGGACGGGTGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGGGCAAGCCGTGGATCGTT
192 --AGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
20712160 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
255 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTG
* * * *
20712225 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACAACTCGTTTTCTA
320 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
* * *
20712290 TTTTTCATGATTTTCAAACCTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
385 TTTTTCACGATTTTGAAACC-TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * ** *
20712355 GGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGTGTGCACAAAGAAATTCAGCTAAA
449 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAA
* * *
20712420 AACTCCAAGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATT
514 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * * *
20712484 GCTACTGACAGCAAACCTGT-GAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGATTTG
579 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGCGAGTTCTTGAGGTTTG
* * ** *
20712548 ATGAGGGATA-GGGGCCAATATAGGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACAC
644 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACA-
* * * * * * * * *
20712612 CCCCCCGCCGGCCCCCTGATCACCGTAA-CCCAATGTCGCTGGTCAGGTTCTCTGGCGATGCTCC
708 CACCCC-CTGGCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCC
** * *
20712676 GAAGATGGTGCCCC-AGTGAAGAAAAATGC-GCACCAGCACATGCCCGACCCCAGCATGTGCTGC
772 GGCGATGGTGCCCCGA-TGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGC
* * * *
20712739 CGCAACCCTCAGTTTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
836 CGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** * * * * *
20712798 AAATGAACTTTGTATGCCTGAGTCAACCCATGAAAAGAGCGTGCGGGTGCTCAGTCGGCCAGAGG
1 ----GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGG
* * * * *
20712863 AGCGGGATGCGCAAGCC-AGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTATTGCTGC
62 GGCGGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGC
* * *
20712927 AACCCTCAGTTTGGTCCGATCTTAGACTAGTAATGAACTCCGTATGCCTAAGCCAACCGACGAAG
126 AA-CCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
20712992 CGAGCGGGCGGGCGGG-TGGCACTACGCCGGCCAGAGAGACGGGATGCACAAG-AGTGGATCGAT
190 CAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * *
20713055 AGTGCGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTGCGTGCCAAAGCCATTTTTATGGCTT
255 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTT-TGTGCCAATGCCATTTTTATGGCTT
* * *
20713119 GTAAATTCATACAATGGTCCATTAAGTCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCT
319 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
* * * * *
20713184 -TTTCTTCACAATTTTTGAAACCTTTTGCGGTTCGGGATTTTTTTAAAATTTTTTTGGAAGGATT
384 ATTT-TTCACGA-TTTTGAAACCTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGT
* *
20713248 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
446 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCT
*
20713313 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTA
511 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
20713378 ATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTCAGGGGATGCGAGTTCTTGAGGT
576 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGCGAGTTCTTGAGGT
* * * *
20713443 TTGGTGAGGGATAGGGGGCCAATATAAGGGCCAGGCACTAGCACCCATCACACATTATGTGCGCA
641 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCA
20713508 CACACCCCCTGGCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTC
706 CACACCCCCTGGCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTC
* * *
20713573 CGGCGATGGTGCCCTGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCCGT
771 CGGCGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGC
* * *
20713638 CACAACCCTCATTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
836 CGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
20713697 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGTCGGCCAGAGGGTCG
1 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * * *
20713762 GGATGCACAAGCCGAGGATTGGCCGGGTCCCCCTCTACTTGCTGCTGATCTTGCTGCTGCAACCC
66 GGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAA-CC
* *
20713827 TCCA-TCTT-GTCCGATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCAACCAACGAAACAA
130 T-CAGT-TTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAA
* * *
20713890 GCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGT
193 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
20713955 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAA
258 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAA
* * * *
20714020 ATTCATACAACGATCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
323 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
* * * * *
20714085 TTCAGGATTTTCGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
388 TTCACGATTTT-GAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
*
20714150 CCCAAACTTGGTTGACGTGATCCTTGTATTTTTATTGGCATGCAC-AAAAAATTCAGCTAAAAAC
452 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
20714214 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCATACACTTTAATGGCT
517 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
20714278 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGCGAGTTCTTAAGGTTTGGTG
582 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGCGAGTTCTTGAGGTTTGATG
* *
20714343 AGGGATAGGGGGCCAATATAAGGGCCAGGCACCAGCACCCATCACACATCATGTGCG--TACACC
647 AGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACACACC
*
20714406 CCCTGGCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCC-GCGA
712 CCCTGGCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGA
* *
20714470 TGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAAC
777 TGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAAC
* * *
20714535 CCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTG
842 CCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
*
20714588 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTCATGGGCGCTCAGCCGGCCAGAGGGGC
1 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT-ACGGGCGCTCAGCCGGCCAGAGGGGC
* * * * *
20714653 GGGATGCGCAAGCCGGGATGAATC-GACGGGTCCCCCTCTACGGTGGTTGTCG-TCCTACCGACC
65 GGGATGCGCAAGCC--GA-GGATCGGCCGGGTCCCCCTCTAC-GT-GCTGCCGATCCTACTG-CC
* * * * * ** *
20714716 GTAACCTCAGTTTGGTCCGATGGTTAGACGATGGGAATGAACTCCATTTGCCTCAG-CAATTGAT
124 GCAACCTCAGTTTGGTCCGAT-CTTAGAC--TGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * ** *
20714780 GAAATAACGTGCGGCGTGGGCGGGCGGGGCACTACGCAAGCCA-TGAGACGGGATGCGCAAGCCG
186 GAAACAA---GCGG-GCGGGCGGGC-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
20714844 TGGGACTCGATATGGGTGGTAGGATGGG-TTATGCACAATCTCTTCATATTTGCTACTG-G-CAA
246 T-GGA-TCGATA-GGGTGGTAGG-TGGGTTTAGGCAC-A--TCTTCATATTT-CT-TTGTGCCAA
* * * *
20714906 TGCCATGTTTATGGCTTGTTAATT-ATACAAGGGT-CCTT-AGCC-TCACGTGGAAGTTTCTTGG
302 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT-GAAGTTTCATGG
* * *
20714967 CAAGAACGACTTCATTTTCTATTTTTCACGATTTTGAAAACTTTTTTACGGTTTGAGAAATTTCT
366 CAAG-ACGAC-TCATTTTCTATTTTTCACGATTTTG-AAAC-CTTTTACGGTTCGAG--ATTTTT
*
20715032 T-AAA-TTTTTCGG-AGGAGTTATTTGG-CCCAAACGTTGGTAGACGTGATCCTTGGGGGTGAAT
425 TAAAATTTTTTCGGAAGGAG-T-TTTGGCCCCAAAC-TTGGTAGACGTGATCCTT----GT-ATT
* *
20715093 CTTCTTGGCATGCACAAAAAAAATT-AGCTAAAAACTTCGAAAGTGTACAAGATTTTGTGACCAT
482 TTTATTGGCATGCAC-AAAAAAATTCAGCTAAAAAC-TCG-AAGTGTACAAGATTTTGTGACCAT
20715157 TTG-AAAAAGTGTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
544 TTGAAAAAAGTG-TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
20715221 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-AT-TAAGGGCC
608 AATGCTCTTTAAGGGGATGCGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* ** ** * *
20715284 AAGTACCAGCACCCATTGCACATCATGTGCGCACACGGCCCC-GGCCCCCCGATCGTCGGAACCC
673 AAGCACCAGCACCCATCACACATCATGTGCGCACACACCCCCTGGCCCCCCGATCATCGAAACCC
* ** * * * * ** **
20715348 CAATACCGTCGATCAGGTTCTCTGGTGATGCTCCAGCGATGGTGCCCCGGGGAAGAAAAATGTGG
738 CAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCAG
* * * * * * *
20715413 CACCAACACTTGCCTGAGCCCTAGCATGTGCTGCCCCAACCCTC-GGTCTGGTCCAACCTTAGAC
803 CACCAGCACATGCCCGAG-CCTAGCATGTGCTGCCGCAACCCTCAGTTC-GGTCCGATCTTAGAC
20715477 TGGGAATGAACTCCGTATGCTTAGAC-GG
866 TGGGAATGAACTCCGTATGCTTAGACTGG
20715505 GA
1 GA
20715507 TGCGCACGCC
Statistics
Matches: 2373, Mismatches: 259, Indels: 130
0.86 0.09 0.05
Matches are distributed among these distances:
891 150 0.06
892 100 0.04
894 167 0.07
895 394 0.17
896 274 0.12
897 244 0.10
898 137 0.06
899 130 0.05
900 28 0.01
901 161 0.07
902 16 0.01
903 11 0.00
904 35 0.01
905 15 0.01
906 39 0.02
907 65 0.03
908 28 0.01
909 8 0.00
912 2 0.00
913 15 0.01
914 10 0.00
915 54 0.02
916 79 0.03
917 150 0.06
918 61 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
GGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCT
CAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCG
GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
ACGATTTTGAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGCGAGTTCTTGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACACACCCCCT
GGCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT
GCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTC
AGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
Found at i:20716166 original size:26 final size:26
Alignment explanation
Indices: 20716130--20716185 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
20716120 CCAGTTCGAT
**
20716130 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20716156 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20716182 CTTA
1 CTTA
20716186 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20723432 original size:26 final size:26
Alignment explanation
Indices: 20723403--20723472 Score: 113
Period size: 26 Copynumber: 2.7 Consensus size: 26
20723393 TCTTATAATG
*
20723403 GGAATTAACTCCGTATGCTTAGACTA
1 GGAATGAACTCCGTATGCTTAGACTA
*
20723429 GGAATGAACTCCGTATGCTTAGACTG
1 GGAATGAACTCCGTATGCTTAGACTA
*
20723455 GGAATGAACTCTGTATGC
1 GGAATGAACTCCGTATGC
20723473 CTAAGTCAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACTA
Found at i:20724347 original size:26 final size:26
Alignment explanation
Indices: 20724318--20724370 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20724308 CTGATCTGAT
*
20724318 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20724344 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20724370 C
1 C
20724371 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20725243 original size:26 final size:26
Alignment explanation
Indices: 20725214--20725266 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20725204 CTGGTCCGAT
20725214 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* *
20725240 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
20725266 C
1 C
20725267 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:20726140 original size:26 final size:26
Alignment explanation
Indices: 20726098--20726150 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20726088 CTGGTCTGAT
*
20726098 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
20726124 CTTAGACTAGGATTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20726150 C
1 C
20726151 CTTAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20727900 original size:26 final size:26
Alignment explanation
Indices: 20727864--20727917 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
20727854 GATCCGATCT
*
20727864 TAGACTGGGAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
20727890 TAGATTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
20727916 TA
1 TA
20727918 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:20728793 original size:26 final size:26
Alignment explanation
Indices: 20728764--20728816 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20728754 CCGGTCCGAT
*
20728764 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20728790 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20728816 C
1 C
20728817 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20729308 original size:898 final size:895
Alignment explanation
Indices: 20721725--20731476 Score: 11461
Period size: 892 Copynumber: 10.9 Consensus size: 895
20721715 TCATGACACC
* * * * * * ** *
20721725 GGGGATCGGTCGGGTCCCCCTCTACGTGTTGCCGATACTGCTGTCACAACCCTCGATCTAATCTG
1 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCG
* * * *
20721790 AACTTAAACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACCAAACGAGCCGGGCGGACGGGC
66 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-C--G-GG-CGGGC
* * * *
20721855 GGACGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGCGTGGTAGGTG
126 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
20721920 GGTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAA
191 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
20721985 TGGTCTCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACGATTT
256 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
20722050 TTGAACCTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTG
321 TTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
20722115 GTTGACGTGATCCTTGTATTTTTTTTGGCATGTACAAAAAAATTCAGCTAAAAACTC-ACGGTGT
386 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGT
* *
20722179 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGT
450 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
20722244 AAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
515 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* * * *
20722309 GGGCCAATATAAGCGTCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGACACC
580 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCGGC-CC
* * *
20722374 CTCGATCGTCGGAACCCCAGTGCCGCCGGTCAGGTTCT-C--C-A------GCGATGGTGCCCCG
642 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCG
* * * * * * *
20722429 ACGAAGAAAAATACAACACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTG
707 GCGAAGAAAAAT-GAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * * * ** *
20722494 GTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTTTGTGTGCCTAAG
771 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
20722559 TCAACCCACAAAACGAGCGTACGGGCGCTCAGCCTGCCAGAGGGGCGGGATGCGCAAGCG
836 TCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT
* * * * * **
20722619 GGGGATCGATCGAGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCGATCTGGTGTG
1 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCG
* * * * *
20722684 ATCGTATACTGGGAATGAACTCCGTATGCCGAAGCCAATCGACGAAATGAGCGGGCGGGCAAGCG
66 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG---GCG
* * *
20722749 GGTGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGG
127 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
20722814 GTTTAGGCACATCTTCATAATTCTGCATG-CAATGCCATTTTTATGGCTTGTAAATTCAAACAAT
192 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
20722878 TGTCCCATAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
257 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
20722943 CAAAA-TGTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
322 TAAAACT-TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
20723007 TTAGACGGGATCCTTGTATTTTCGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
386 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
20723072 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCA
451 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
20723137 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
516 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
20723202 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-------CCCCCCG
581 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCG
* * * * * * **
20723260 ATCACCAGAACGCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCGGCGGTGGTGCCCCAACG
646 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGGCG
* *
20723325 AAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCCCGATCTGGTC
710 AAGAAAAATGAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA--CCC--TC-GGT-
*
20723390 CAATCTTATAATGGGAATTAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
768 C---C--------GG-------TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
20723455 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCGCTCAGCCGGCCAGAG
813 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAGAG
* * * *
20723520 AGGCGAGATGCGCTAGCC
878 GGGCGGGATGCGCAAGCT
** * * * ** * * *
20723538 AAGGATCAGTCGGGTCCCCCTCTACATATTGCCGATCTTGCTGCCACAACCCTTGGTCTGG-CCT
1 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCC-
* * *
20723602 GATCTTAGATTGGGAATTAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGC
65 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* *
20723667 GGGCACTACGCTGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
130 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
20723732 TAGGCACATCTTCATATTTCTACATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGT
195 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
20723797 -CCTTAAGCCATCACGTGAAGTTTCATGGCAAGACAACTCGTTCTCTATTTTTCACGATTTTCAA
260 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAA
* * * * * *
20723861 AACTTTATGCGGTTCGGGATTTTTTTAAATTTTTTTGCAAGGAGTTTTGGCCCCAAACTTGGTAG
325 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * ** *
20723926 ACGGGTTGCTTGTATTGCTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAATTGTACAAG
390 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
20723991 ATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGTAGCAAACC
455 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
20724056 TGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
520 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
*
20724120 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCTCGGCCCCCCGA
585 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCC-CGGCCCCCCGA
* * * * * *
20724185 TCGCCGGAACCCCAATGTCGCCGGTCAGGATCTCCGGCGATGCTCCGGTGATGGTGCCCCAGTGA
647 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGGCGA
* * * * * *
20724250 AGAAAAAT-ACGGTACCAGCACATGCCCGAGCCCAGCATTTGCTGCCGTAACGCTCGGTCTGATC
711 AGAAAAATGA--GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * *
20724314 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCG
774 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
20724379 ACCCACGAAATGAGTGTGCGGGTGCTCA-CTTGGCCAGAGGGGCGAGATGCGCAAG-T
839 ACCCACAAAACGAGCGTACGGGCGCTCAGC-CGGCCAGAGGGGCGGGATGCGCAAGCT
* * * * *
20724435 CGAGGATCGGTCGGGTCCCCTTCTGCGTGCTGCCGATCCTGCCGCCGCAACCCTTGGTCTGATCC
1 -GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCC
* * *
20724500 AATCTTAGACAGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGC
65 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* *
20724561 GGGCACTACGGCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
130 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
20724626 TAGGCACATCCTCATATTTCTGCATGCTAATGCCATTTTTATGGCTTGTAAATTAATACAATGGT
195 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
** * *
20724691 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAATTTCTATTTTTCATGATTTTTGA
260 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAA
* * * *
20724756 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCCCCAAACTTCGTAG
325 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
20724821 ACGTGAT-CTATGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAA
390 ACGTGATCCT-TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
20724885 GATTTTGTGATCATTTGAAAAAAATGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
454 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
20724950 CTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGCTCTTAGGGTTTGATAAGGGATAGGGGGC
519 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* *
20725015 CAATATAAGGGCCAAGTACCCGCACCCATCGCACATCATGTGTGCACACCCCCTCGGCCCCCTCG
584 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CGGCCCCC-CG
* * * * *
20725080 ATCACCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACG
646 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGGCG
* * * * * * * *
20725145 AAGAAAAATGCGTCACCAGCACATGTCCGAGCCTAGCCTGTGCTGTCGCAACCTTCAGTCTGGTC
710 AAGAAAAATGAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* *
20725210 CGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
774 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
20725275 ACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTT
839 ACCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT
* * * * * * *
20725332 GGGGATTGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTCCGGTCCA
1 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCG
* * * * * *
20725397 ATCTTAGACTGGGAATGAACTCCATATACCTAAGCCAACCAATGAAAC-A---AGCGGGCGGACG
66 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* *
20725458 GGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTT
131 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* **
20725523 AAGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
196 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
20725588 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
261 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * * *
20725653 ACTTTTTACGGTTCGAGATTTTTTAAAATTATTTCGGAAGGAGTTTTGGCCCCAAAATTTGTAAA
326 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * * *
20725718 CCTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCATCCACAAACTCGAGGTGTACAAGA
391 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
20725783 TTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTAGCAGCAAACC
456 TTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* **
20725848 TGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
520 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * * *
20725913 AATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACCCCCCCGACACCCCTGATC
585 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGC-CCCCCGATC
*
20725978 GCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C---G----GCGATGGTGCCCCGGTGAAGA
649 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGGCGAAGA
* * * * * *
20726033 AAAAT-ACGGCACCAGCACATGCCCAAGCCCAACATGTGCCGCCGTAACCCTCGGTCTGGTCTGA
714 AAAATGA--GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* * *
20726097 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGATTGAACTCCGTATGCCTTAA-TCAAC
777 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC-TAAGTCAAC
* * **
20726161 CCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCTAGATGCGCAAGCCT
841 CCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CT
* * * * * * ** *
20726217 -GGGATCGG-CTGGTCCCCCTTTGCGTGTTGCCGATCCTGCTGCCACAGCCATCGGTCCAGTCTG
1 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCG
* *
20726280 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTG
66 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* *
20726345 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTT
131 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
20726410 ATGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTC
196 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * * * * *
20726475 CCCTAAGCCTTCACGTGAAGTTTAATGGCGAGACAACTCGTTTTTTATTTTTCACAATTTTTGAG
261 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * * *
20726540 ACATTTTACGGTTCGAGATTTTTAAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAGA
326 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
20726605 CATGAACCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-ACAACTCGAAGTGTACAAGA
391 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
20726669 TTTTGTGACCATTTGAAAAAAGTGTGCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACCT
456 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
20726734 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
521 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
20726799 TTATAAGGGCCAAATACCAGCACCCATCGTAAATCATGTGCGGACACTCCCCCCGGCCCCCCGAT
586 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-G-CAC-ACCCCCGGCCCCCCGAT
* * * * * * **
20726864 CGCCGGAACCTCAATGCCGTCAGTTAGGTTCTCCGATGATGCTTCGACGATGGTGCCTTGGCGAA
648 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGGCGAA
* *
20726929 GAAAAAT-ATGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAA-CC-C--T-C-G---
712 GAAAAATGA--GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
*
20726984 G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
775 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * *** *
20727032 CTCACAAAATAAGCGTGAC-GGTGCTCAATTGGCCAGAGGGGCGAGATGCGCAAGCT
840 CCCACAAAACGAGCGT-ACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT
** * * * ** *** *
20727088 GGGGATCGACCGAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGTGACCCTCGGTCCAATCCA
1 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCG
* * *
20727153 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACAAAACGAGTGGGCAGATGGGCG
66 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----GGGCG
* * * * *
20727218 GGTGGGCGCTACACCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCT-GGTT
127 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG-TAGGTG
*
20727282 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAA
191 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
20727347 TGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
256 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
20727412 TCAAAACTTTTTGCGGTTCAAGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTC
321 TTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* ** * *
20727477 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCGTAAAAAAATTCAACTAAAAACTCGAAGTATA
386 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
20727542 CAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATATT-AGACACTTTAATGACTACTGGCAGC
451 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TTCAGACACTTTAATGGCTACTGGCAGC
*
20727606 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAA-GTTTGATGAGGGATAG
515 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AAGGTTTGATGAGGGATAG
* *
20727670 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCACCCGACCC
579 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCGGCCC
* * * * * *
20727735 CGCGATTGCCAGAACCCCAATGCCACCGATCAGGTTCT-C--C---G----GCGATGGTGCCTCG
642 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCG
* * * * *
20727790 ACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCACGTGCTGCCGCAACCCTTGGTCCG
707 GCGAAGAAAAATGAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * * *
20727855 ATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAGATTGGGAATGAACTCCGTATGCCTAAG
771 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * ** *
20727920 TCAACCCACGAAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGCTGGATGAACAAGCC
836 TCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT
* * * * * * * *
20727980 GGGGATCGATCGGGTCCCCCTTTGCATGCTGCCGATCCTGTTGTCGCAACCCTCAGTCCGGTCTG
1 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCG
*
20728045 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCATGCGGGCGGGCG
66 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGCG
* *
20728110 GGCGGGCACTACGGCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGG
127 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
** * * * * * *
20728175 GTTCCGGCACATCTTCACATTTTTGCGTGCCAATGCAATTTTTCTGGCTTCTAAATTCATACAAT
192 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
20728240 GGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
257 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * *
20728305 TAAAACTTTCTGCGGTTCAAGATTTTTTACAATTTTTTCGAAAGGAGTCCTTT--TCCCAAACTT
322 TAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT--TTTGGCCCCAAACTT
**
20728368 ATTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
385 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* **
20728433 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATAACTACTGGCAGC
450 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
20728498 AAACCTATAAAACCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
515 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* *
20728563 GGGCCAATTTAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCGGCGCCCC
580 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGC-CCCC
* * *
20728628 CGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGG
644 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGG
* * * *
20728693 TGAAGAAAAATGTAGCACCAGCACATGCCCGAACACAGCATGTGCTGTCGCAACCCTCGGTCCGG
708 CGAAGAAAAATG-AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
20728758 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCATATGCCTAAGT
772 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
20728823 CAACCCATAAAACGAGCGTACGGGCACTCAGCCGGCCAGAGTGGCGGGAT-CTGTAAGAT
837 CAACCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-GCAAGCT
* * ** * * * *
20728882 GGGGATCGGTCGGGTCCCCTTTTTTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTTTGGTCCA
1 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCG
* * *
20728947 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGTGGGCGGGTG
66 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * * *
20729012 GGCACTTCACCAGCCAGAGACACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTT
131 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*** * *
20729077 AGGCACATCTTCATATTTCTATGTGCCACTGACATTTTTATGGCTTGTAAATTCATACAATGGTC
196 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
20729142 CCTTAAGCCTTCACGTGCAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
261 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* *
20729207 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAA
326 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
20729272 AGTTATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
391 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
20729337 TTTTGT-ATCCATTTGAAAAAAGTGTCCCCATTTTAGAC-CTTTAATGGCTATTGGCAGCAAACC
456 TTTTGTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * **
20729400 TGTACAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
520 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * * *
20729465 AATATAAGGGCCAAGTA-CACCACCTATCGCACTTCATGTGCGCACACCCCCCCGACCCCCCCGA
585 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCG-GCCCCCCGA
* * * * *
20729529 TCGTCGGAACACCAATGCCACCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGTGA
647 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGGCGA
* * * * * * *
20729594 AGAAAAAAGTAGCACCAACACATGCCCAAGCCCTGCATGTGCTGCTGCAACCCACGGTCCAGTCC
711 AGAAAAATG-AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* * *
20729659 AATCTTAGACTGGGAATGAACTCCGTATGCCTA-A----G--TCAAC-CC--A---C---G--AA
775 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * ** * * ** * *
20729706 ---AC-AAGTG-GTGGCCGGGCGCTCAGCCGACCAGAAGGGTAGGATGCGTAAGCC
840 CCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT
* * * * *
20729757 GAGGATCGGTC-GGT-CCCCTCTTGCGTGCTGCCGATCCTACTACCCACAACACTCGGTCTGGTC
1 GGGGATCGGTCGGGTCCCCCTC-TGCGTGCTGCCGATCCTGCT-GCCGCAACCCTCGGTCTGGTC
* * * * *
20729820 TGATCGGTAGACTGGGAATGAACTCTGTAT-CCTAAGCCAACCGATG-AACGA----GCGGGTGG
64 CGATC-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* *
20729879 GCGAGCACTATTCGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGGTAGGT
128 GCGGGCACTA--CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-GGTAGGT
* * * * *
20729944 GGGTTTAAGGCACATCTTCATATTTCTACGTGCGAATGCAATTTTTGTGGCTTGTAAATTCATAC
190 GGGTTT-AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
20730009 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCG--TTC-A------A-G--
254 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * *
20730061 ------------TT--GG--CCA-A---CTT--AATCCTTTTCGAAAGGAGTTTTGGCACCAAAC
319 TTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
20730104 TTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGT
383 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
20730169 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
448 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * *
20730234 GCGAACCTGTAAAATCTGACATGCTCTTTAA-GGGGTGTGACTTCTCGAGGTTTGATGAGGGATA
513 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
* * * * * * *
20730298 GGGGGACCAATATAAGGGCCAAGTA-CAGCACTCATCACACATCAAGCGC-CCCACTAGCCCAGC
578 GGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC--CCCCGGC
* * * * *
20730361 CCGGCCCTATCACCGGAAACCCCAATG-CGATCGGTCAGGGTTCTTC-AGTGATGCTCCGCGCGA
640 CC--CCCGATCGCCGG-AACCCCAATGCCG-CCGGTCA-GGTTCTCCGA-CGATGCT-C-CGCGA
** * * * * * * *
20730424 TCATGCCCTGACGAA-AAAAATGCGGTAGCAGCACATGCCTGAGCCCAGCATGT-CTACCGCAAC
697 TGGTGCCCCGGCGAAGAAAAATG-AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* *
20730487 CCTTGGTCTGGTCCGATCTTAGACTGGGAGATGAACTCCGTTATGCTTAGACT-GGAATGAACT-
761 CCTCGGTCCGGTCCGATCTTAGACTGGGA-ATGAACTCCG-TATGCTTAGACTGGGAATGAACTC
* ** * *
20730550 CGTATGCCT-AGTCAACCCAACGAAACGAGTTTACGGGCCGCTCAGATCGACCAGAGGGGCCGGG
824 CGTATGCCTAAGTCAACCC-ACAAAACGAGCGTACGGG-CGCTCAG-CCGGCCAGAGGGG-CGGG
* *
20730614 ATTACGCAAGCC
885 A-TGCGCAAGCT
* ** * * * * * * * *
20730626 AGGGATCGACCGAGTCCCCCTCTGCTTGCTGTCGATCCTGCTGCTGGAAACCTCGGTTTGGTCTG
1 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCG
* * *
20730691 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAACGGGCGGGTGGGCG
66 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--GA--AACGAGCGGGCGGGCG
* * * * * *
20730756 GACGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATTGATAGGGTGGTAGGTGT
127 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *** *
20730821 GTTTAGGCACATCTACATATTTCTATGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAAT
192 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
20730886 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTT
257 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * * * *
20730951 CGAAACTCTTTGCGATTCTG-GATTTTTCAAAATTTTTTCGGAATGAGTTTT-GCCCCAAACTTG
322 TAAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
20731014 GTAGACGTTATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCACCTAAAAACTCGAAGTGTA
386 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
20731079 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCA
451 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
20731144 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGA-GG
516 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
*
20731208 GGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCTGGCCCCCC
581 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-GG-CCCCC
** * * * * *
20731273 CGATCATCGGAACCTCAATGTCGCCGGTCAGGTTCTCCAACGATGCTTCGGTGATGGTGCCCCGG
644 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC-TCCGCGATGGTGCCCCGG
* * * * *
20731338 TGAAGAAAAAT-ATGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCACAACCCTCGGTCTG
708 CGAAGAAAAATGA--GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* *
20731402 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAG
771 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
20731467 TCAACCCACA
836 TCAACCCACA
20731477 GAGTGAGCGT
Statistics
Matches: 7620, Mismatches: 956, Indels: 553
0.83 0.10 0.06
Matches are distributed among these distances:
838 1 0.00
839 6 0.00
840 168 0.02
841 93 0.01
842 48 0.01
843 53 0.01
844 22 0.00
845 4 0.00
847 2 0.00
848 1 0.00
849 2 0.00
850 5 0.00
852 1 0.00
855 1 0.00
857 1 0.00
859 2 0.00
863 3 0.00
864 4 0.00
865 7 0.00
866 64 0.01
867 14 0.00
868 25 0.00
869 48 0.01
870 34 0.00
871 16 0.00
872 120 0.02
873 118 0.02
874 216 0.03
875 93 0.01
876 75 0.01
877 319 0.04
878 189 0.02
879 3 0.00
880 2 0.00
881 1 0.00
882 34 0.00
883 90 0.01
884 179 0.02
885 153 0.02
886 34 0.00
887 322 0.04
888 13 0.00
889 4 0.00
890 14 0.00
891 49 0.01
892 1008 0.13
893 150 0.02
894 238 0.03
895 308 0.04
896 745 0.10
897 256 0.03
898 750 0.10
899 9 0.00
900 4 0.00
901 2 0.00
902 268 0.04
903 26 0.00
904 66 0.01
905 63 0.01
906 43 0.01
907 184 0.02
908 53 0.01
909 3 0.00
910 2 0.00
914 82 0.01
915 351 0.05
916 39 0.01
917 3 0.00
918 5 0.00
919 201 0.03
920 2 0.00
922 2 0.00
924 103 0.01
925 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCGATCGC
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGGCGAAGAAA
AATGAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
AAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT
Found at i:20731445 original size:26 final size:26
Alignment explanation
Indices: 20731409--20731461 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20731399 CTGGTCTGAT
20731409 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20731435 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20731461 C
1 C
20731462 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20733024 original size:26 final size:26
Alignment explanation
Indices: 20732984--20733036 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20732974 CTAATCCGAT
*
20732984 CTTAGAATGGAAATGAACTCTGTATG
1 CTTAGAATGGAAATGAACTCCGTATG
* *
20733010 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGAATGGAAATGAACTCCGTATG
20733036 C
1 C
20733037 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGAAATGAACTCCGTATG
Found at i:20735005 original size:864 final size:864
Alignment explanation
Indices: 20731435--20736890 Score: 6114
Period size: 869 Copynumber: 6.2 Consensus size: 864
20731425 ACTCCGTATG
* * * * *
20731435 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACC--C-ACA-GAGTGA-GCGTGCGGGCAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGGCGGGCAC
* * ** *
20731495 TACGTCGGCCAGAGAGATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG--
66 TACGCCGGCTAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
20731558 --------------TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
20731609 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * * *
20731674 TTACGGTTCAGGATTTTTAAAAATTTTTTTTGGAAGGTGTTTTCGCCCAAAACATGGTAGATGTG
261 TTACGGTTCAGGATTTTTTAAAA-TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
20731739 ATCCTTGTATTTATT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
325 ATCCTTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
20731803 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
20731868 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
20731933 TAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCG-----CA--C-ACCCCCCGATCGCCG
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCGACCCCCCGATCACCG
* * *
20731990 GAGCCCCAATGCCGCCGGTAAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
584 GAACCCCAATGCCGCCGGTCAGG---T-T--C--T-CT--GACGATGGTGCCTCGACGAAGAAAA
** * * * * *** ** *
20732055 ATGTGGCACCAGTACTTGCCCGAGCCCAGCATCTGCTACTATAACC-C-TCGA-TCT-GCTCTGA
638 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCTTCGATTCTATATCTAA
* * *
20732116 T-CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCA
703 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
20732180 GTCAGCC-AGGGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT-TTACATGCTGTC-
768 GTCGGCCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTT-CGTGCTGCCG
* * * *
20732242 AGTCCTGCTA-CCGCAACCCTCGGTCTGGTCTAAT
832 A-TCCTAC-AGCCACAACCCTCGGTCAGGTCCAAT
* * *
20732276 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC--G-AGGCGGG
* **
20732341 CGGGCACTACGCCGGTTAGAGAGACGGGATGCGCAAGCTAGGGATCGATAGGGTGGTAGGTGGGT
59 CGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGT
20732406 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
20732471 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTTG
189 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** * * *
20732536 AAACTTTTTACGGTTCAGGA-TTTAAAAAATTTTTTTTTGGAAGGTGTTTTCGCCCAAAACTTGG
254 AAACTTTTTACGGTTCAGGATTTTTTAAAA--TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
20732600 TAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTAC
317 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
20732665 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
382 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
20732730 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATCAAGGATAGGGG
447 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
20732795 GCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATTTGCGCACACCCCCCGGCCCCCCC
512 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCC-GACCCCCC
** * * * * ** * ** *
20732860 GATCGTCGGAACACCAATGCCGTCGGTCTGGTTGTCCAACGATGGTGCCCCGAAAAAGAAAAATG
576 GATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGGTGCCTCGACGAAGAAAAATA
* * *
20732925 CGCCCCCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGCAACCTTTGGTCTAATCCGATCTTAGA
641 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC-----TCT--T-CGA--TT---
* * *
20732990 ATGGAAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
693 CT----AT--A-TCT-AATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * ** * *
20733055 CAAGCGTGCAGGCGCTCAGTCGGCC-AGAGGGGCGGGATGCACAAGCCAAGGATCGACTGAGTCC
750 CGAGCGTGCGGGCGCTCAGTCGGCCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCC
* * * * * * ** * *
20733119 TCTTCTGCATGCTGTCGATCCTACTGCTGCAACCCTCGATCCGGTCCAAT
815 CCCTCTTCGTGCTGCCGATCCTACAGCCACAACCCTCGGTCAGGTCCAAT
* * * * *
20733169 CTTGGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCTGGCGGCCAGGCTGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC-G--AGGCGGG
* * * * * * * *
20733234 CGGGCACTACGTCGCCCAGAGAGACGGGATGCGTAAGCCGTGGATCAATAGAGTGGTAGGTAGGT
59 CGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGT
* * *
20733299 TTAGGCACATCTTAATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGT-AATTAATACAATGG
124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
20733363 TCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCCATTTTTAACGATTTTTG
189 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
20733428 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGTGTTTGGGCCCCAAACTAGGTA
254 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
20733493 GACGTGATCCTTGTATTTTTGTTGGCGTGCAAAAAAAAATTCAGCTACAAACTCGAAGTGTACAA
319 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
20733558 GATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
384 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
20733623 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT-ATTGAGGGATAGGGGG
449 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA-TGAGGGATAGGGGG
* * *
20733687 CCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACTCCACCC-AACCCCCGA
513 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCGACCCCCCGA
* ** * *
20733751 TCACCGGAACCCCAATGCCGCTGGTCAGGTTCTCTGACGATGGTGCCTCGGTGAAGAGAAATATG
578 TCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGGTGCCTCGACGAAGAAAAATACG
* * *
20733816 GCA-CAGCACATGCTCGAGCCTAGCATGTACTGCCGCAACCCTCGTTCCTATTCGATCTTAGGCT
643 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA--C-C--T-C--TTCGA--TT---CT
* * * * *
20733880 GGGAATGAACTCTGTACGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCATCCCATGAAACG
695 ----AT--A-TCT-AATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * *
20733945 AGCGTGTGGGCGCTCAGTCAG-CTAGATGGGCGGGATCCGCAAGTCGGGGATTGGCCGGGTCCCC
752 AGCGTGCGGGCGCTCAGTCGGCCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCC
* * * * * *
20734009 CTCTACGTGCAGTCGATCCTACTGCCACAACGCTCGGTCCGGTCCAAT
817 CTCTTCGTGCTGCCGATCCTACAGCCACAACCCTCGGTCAGGTCCAAT
* * * * *
20734057 CTTAGTCTGGGAATGAATTCTGTCTGCCTAAGCCAACCGATGAAACGAGCG-GGCGGGCGGGCAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGGCGGGCAC
*
20734121 TACGCCGGCTAGAGAGACGGGATGCGCAAG-CGAGGGATCGATAGGTTGGTAGGTGGGTTTAGGC
66 TACGCCGGCTAGAGAGACGGGATGCGCAAGCCG-GGGATCGATAGGGTGGTAGGTGGGTTTAGGC
20734185 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
130 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
20734250 AAGACTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
195 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
** * *
20734315 TTTGTGGTT-TGAGATTTTTTAAAATTATTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
260 TTTACGGTTCAG-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
20734379 -ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTT
324 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
20734443 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACTGGCAACAA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-A---G---CAA
*
20734508 ACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTTGATGAGGGATAGGG
447 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGG
* *
20734573 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTACGCACACCACCCGACCCCCC
511 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCGACCCCCC
* ** * ** *
20734638 GTTCACCGGAACCTAAATGCTGCCGGTCAGGTTCTCTGACGATGGTGCCTCGGTGAAGAGAAATA
576 GATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGGTGCCTCGACGAAGAAAAATA
* * *
20734703 CGGCACCAGCACATGCTCGAGCCCAGCATGTACTACCGCAACC-C-TC-ATTCCTAT-TC-AAT-
641 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCTTCGATT-CTATATCTAATG
*
20734762 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAGT
705 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * *
20734827 CGGTC-GGATGGGCAGGATGCGCAAGCCGAGGATTGGCCGGGTCCCCCTCTTCGTGCTGCCGATC
770 CGGCCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTTCGTGCTGCCGATC
*
20734891 CTACAGCCACAACCCTCGGTCAGGTCCGAT
835 CTACAGCCACAACCCTCGGTCAGGTCCAAT
* * *
20734921 CTTAGTCTGGGAATGAACTCTGTCTGCCTAAGCCAACCGACGAAACGAGCG-GGCGGGCGGGCAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGGCGGGCAC
* **
20734985 TACGCCGACTAGAGAGACGGGATGCGCAAGCTAGGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
66 TACGCCGGCTAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
20735050 CATCTTCATATTTCTGCATGCCAATGCTA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
20735114 AGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
** * *
20735179 TTGTGGTTC-GAGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCCCAAACTTGGTAGATGT-
261 TTACGGTTCAG-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
20735242 ATCCTTGTATTTTTGTTGGCATGCACAAAACAATTAAGCTAAAAACTCGAAGTGTACAAGATTTT
325 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
20735307 GTGACCATTCGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGATACTCGCAGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
20735372 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * *
20735437 AAGGGCCAAGTACCAGCACCCATCACACAACATGTGCGCACAGCCCCCCGGCCCCCCGAGCACCG
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCACCCGACCCCCCGATCACCG
* * * *
20735502 GAACCCCAATGTCGCCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCTCGGCGATGAAAA
584 GAACCCCAATGCCGCCGGTCAGG---TT---C--T-CT--GACGATGGTGCCTCGACGAAGAAAA
* * * ** * * * ** *
20735567 ATGCAGCTCCAGCACATTG-CCGAGCAAAGCATGTGCTGCTGTAACC-CTT-GGTTC--GGTCTG
638 ATACGGCACCAGCACA-TGCCCGAGCCCAGCATGTGCTGCCGCAACCTCTTCGATTCTATATCTA
* * *
20735627 AT-CTTAGATTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAATGAGCGTGCGGGCGCTC
702 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * *
20735691 AG-CCGACTAGAGGGGCGGGATGCACAAGCCGGGGATCAATCGGGTCCCCCTCTGCGTGCTGCCA
767 AGTCGGCCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTTCGTGCTGCCG
* * **
20735755 ATCCTACTA-CCGCAACCCTTGGTCCA-GTCTGAT
832 ATCCTAC-AGCCACAACCCTCGGT-CAGGTCCAAT
* * *
20735788 CTTAGACTGGGAATGAACTCCGTATGCCTGAGCCAATCGACGAAACGAGCGAGCTGACGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAG--G-CGGGCGGG
* * *
20735853 CACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGACCGATAGGGTGGTAGGTGGATTTAG
63 CACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
20735918 GTACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
128 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
20735983 TTAAGCCTTCACGCGATGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
193 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * * *
20736048 TTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGAAAGTAGTTCTAGCCCCAAACCTGGTAGACG
258 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * **
20736113 TGATCCTTGTATTTTTGTTGGCGTGGATAAAAAACTTCAGCTAAAAACTCTCAGTGTACAAGATT
323 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
20736178 TTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTATTGGCAACAAACCTGT
388 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
20736243 AAAATCTCAATTGCTCTTTAAGGGGGCGTGAGTTCTCCAGGTTTGATGAGAGATA-GGGGCCAAT
453 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
20736307 ATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCG
518 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCACCCGACCCC-CCGATCA
* * * **
20736372 TCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGATGGTGCCTCGACGAAGAAAAATGA-GGC
581 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGGTGCCTCGACGAAGAAAAAT-ACGGC
*
20736436 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACACTCGGTCTGGTCTGATCTTAGACTAG
645 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC-A-AC-C--TCT--TC-GA--TT---CT--
* * ** *
20736501 GAATGAACTCCAAATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAG
695 --AT--A-T-CTAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * ***
20736566 GGTGCGGG-GCTCAGCCGGCC-AGAGGGGCGGGATGTGCAAGCCTGGGATCG-GTTGGTCCCCCT
754 CGTGCGGGCGCTCAGTCGGCCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGT-CCCC-
* * * * **
20736628 TTGCGTGCTGTCGATCCTGCTGCCGATCCTGCTGCCACAATCATCGGTCCA-GTCTGAT
817 ---C-T-CT-TCG----TGCTGCCGATCCTACAGCCACAACCCTCGGT-CAGGTCCAAT
*
20736686 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC--G-AGGCGGG
* * * * *
20736751 CGGGTGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGT
59 C----GGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGT
20736816 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
120 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
20736881 ATGGTCCCTT
185 ATGGTCCCTT
20736891 TGAAAAAAGT
Statistics
Matches: 4002, Mismatches: 437, Indels: 287
0.85 0.09 0.06
Matches are distributed among these distances:
841 34 0.01
843 1 0.00
844 2 0.00
845 2 0.00
849 1 0.00
851 1 0.00
853 66 0.02
855 64 0.02
856 85 0.02
859 3 0.00
861 2 0.00
862 56 0.01
863 268 0.07
864 293 0.07
865 6 0.00
866 5 0.00
867 296 0.07
868 21 0.01
869 391 0.10
870 5 0.00
871 96 0.02
872 209 0.05
873 193 0.05
874 4 0.00
875 3 0.00
876 2 0.00
877 6 0.00
878 31 0.01
879 3 0.00
880 222 0.06
881 132 0.03
883 3 0.00
884 3 0.00
886 4 0.00
887 90 0.02
888 353 0.09
889 130 0.03
890 35 0.01
891 269 0.07
892 98 0.02
893 296 0.07
894 4 0.00
898 78 0.02
902 6 0.00
903 1 0.00
904 1 0.00
905 2 0.00
906 126 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (864 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGGCGGGCAC
TACGCCGGCTAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCGACCCCCCGATCACCGGA
ACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGGTGCCTCGACGAAGAAAAATACGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCTTCGATTCTATATCTAATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCTAGAGG
GGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTTCGTGCTGCCGATCCTACAGCCACA
ACCCTCGGTCAGGTCCAAT
Found at i:20736654 original size:12 final size:12
Alignment explanation
Indices: 20736633--20736663 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
20736623 CCCCTTTGCG
*
20736633 TGCTGTCGATCC
1 TGCTGCCGATCC
20736645 TGCTGCCGATCC
1 TGCTGCCGATCC
20736657 TGCTGCC
1 TGCTGCC
20736664 ACAATCATCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.39, G:0.26, T:0.29
Consensus pattern (12 bp):
TGCTGCCGATCC
Found at i:20738098 original size:26 final size:25
Alignment explanation
Indices: 20738069--20738120 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20738059 CTGGTCCGAT
20738069 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACT-CGTATG
*
20738095 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAAAGAACTCGTATG
20738120 C
1 C
20738121 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (25 bp):
CTTAGACTGGGAAAGAACTCGTATG
Found at i:20738962 original size:900 final size:892
Alignment explanation
Indices: 20737203--20739035 Score: 2509
Period size: 900 Copynumber: 2.0 Consensus size: 892
20737193 CCAGTCCAAT
* * *
20737203 CTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGC
* * * * ** *
20737268 CGGCCAAAAGGGTGGGATGCGCAAGCCGAGGATTGGTCGGGTCCCCCTATGCGTGCTGCCGATCC
66 CGACCAAAAGGGCGGGATACGCAAGCCGAGGATCGACCGAGTCCCCCTATGCGTGCTGCCGATCC
20737333 TACTACCACAACACTAGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TACTACCACAACACTAGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
** ** *
20737398 CCGATGAAACGAGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
196 CCGAAAAAACGAGCGGGTGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
* * * *
20737463 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCGAATGCAATTTTTGTG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTACATATTTCTACGTGCCAATGCAATTTTTATG
*
20737528 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATT
* *
20737593 TTCTATTTTTCACAATTTTCAAAATTTTTGAGGTTCGAGAATTTTTAAAATTTTTTCGAAAGGAG
391 TTCTATTTTTCACAATTTTCAAAATCTTTGAGATTCGAGAATTTTTAAAATTTTTTCGAAAGGAG
* *
20737658 TTTTGGCACCAAACATGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAATTAAGCT
456 TTTTGGCACCAAACATGGTAGACATCATCCTTGTATTTTTGTTGGCATGCACAAAAAATTAAGCT
* *
20737723 AAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTA
521 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTA
* * *
20737788 ATGGCTACTGGCAGCAAACCTGTAAAATCTGACATGCTCTTTAAGGGGGTGTGACTTCTCGAGGT
586 ATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGT
*
20737853 TTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCACGCA
651 TTGATGAGGGAGAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCACGCA
* * *
20737918 CACCGCACCCGGCCCCTATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCG
716 CACCGCACCCGCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGACGCTCCG
* * ** * *
20737983 GCGATCATGCCCTGACGAAGAAAAATGCGGTAGCAGCACATGCCTGAGCCCAGCATGTGCTGCCG
781 GCGATCATGCCCCGACGAAAAAAAAAACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCG
*
20738048 CAACCCTTGGTCTGGTCCGATCTTAGACTGGGAAAGAACTCCGTATG
846 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAAGAACTCCGTATG
*
20738095 CTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAA-TGTACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGCGTACGGGCGCTCAG
* * * * * *
20738158 TCGACCAGAGGGGCGGGATACGCAAGCC-AGGGATCGACCGAGTCCCCCTCTGCTTGCTGTCGAT
65 CCGACCAAAAGGGCGGGATACGCAAGCCGA-GGATCGACCGAGTCCCCCTATGCGTGCTGCCGAT
* * ** * * * *
20738222 CCTGCTGCCGTAACCCTCAGTTC-GGTCTGATCTTAGACTATGTATGAACTCCGTATGCCTAAGC
129 CCTACTACCACAACACT-AGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
*
20738286 CAACCGACAAAATGAGCGGGCGGGTGGGCGGACGGGCACTACACCGGCCAGAGAGACGGGATGCG
193 CAACCGA-AAAA--A-CGAGCGGGT--G-GG-CGGGCACTACACCGGCCAGAGAGACGGGATGCG
* * * *
20738351 TAAGTCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTACATATTTCTATGTGCCAATG
250 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTACATATTTCTACGTGCCAATG
*
20738416 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
315 CAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * **
20738481 GACGATTCATTTTCTATTTTTCACGATTTTCGAAACTCTTTGCTATTCTG-G-ATTTTTCAAAAT
380 GACAACTCATTTTCTATTTTTCACAATTTTC-AAAATCTTTGAGATTC-GAGAATTTTT-AAAAT
* * * * * * *
20738544 TTTTTCGGAATGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTGTTTTTGTTGGCGTGCA
442 TTTTTCGAAAGGAGTTTTGGCACCAAACATGGTAGACATCATCCTTGTATTTTTGTTGGCATGCA
* *
20738609 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
507 C-AAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCC
20738674 ATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
571 ATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
20738739 GTGAGTTCTCGAGGTTTGATGAGGGAGA-GGGACCAATATAAGGGCCAAGTACCAGCACCCA-CT
636 GTGACTTCTCGAGGTTTGATGAGGGAGAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATC-
* ** * * * * * *
20738802 GCACATCATGTGCGCACACC-C-CCTTGCCCCCCGATCATCGGAACCTCAATGTCGTCGGTCAGG
700 ACACATCATGCACGCACACCGCACC-CG-CCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGG
* * ** **
20738865 TTCTCC-GATGACGCTTCGGTGATGGTGCCCCGGTGAAAAAAAAAACGGCACCAGCACATGCCTG
763 TTCTCCAG-TGACGCTCCGGCGATCATGCCCCGACGAAAAAAAAAACGGCACCAGCACATGCCTG
* * * * * **
20738929 AGCCTAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGTGAATGAACTTTGTAT
827 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAAGAACTCCGTAT
20738994 G
892 G
* *
20738995 CTTAGATTGGGATTGAACTCCGTATGCCTAAGTCAACCCAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
20739036 AGAATGAGCG
Statistics
Matches: 820, Mismatches: 101, Indels: 31
0.86 0.11 0.03
Matches are distributed among these distances:
890 1 0.00
891 144 0.18
892 27 0.03
894 1 0.00
895 8 0.01
897 1 0.00
898 4 0.00
899 188 0.23
900 277 0.34
901 169 0.21
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGC
CGACCAAAAGGGCGGGATACGCAAGCCGAGGATCGACCGAGTCCCCCTATGCGTGCTGCCGATCC
TACTACCACAACACTAGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
CCGAAAAAACGAGCGGGTGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTACATATTTCTACGTGCCAATGCAATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATT
TTCTATTTTTCACAATTTTCAAAATCTTTGAGATTCGAGAATTTTTAAAATTTTTTCGAAAGGAG
TTTTGGCACCAAACATGGTAGACATCATCCTTGTATTTTTGTTGGCATGCACAAAAAATTAAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTA
ATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGT
TTGATGAGGGAGAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCACGCA
CACCGCACCCGCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGACGCTCCG
GCGATCATGCCCCGACGAAAAAAAAAACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAAGAACTCCGTATG
Found at i:20740570 original size:26 final size:26
Alignment explanation
Indices: 20740541--20740593 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20740531 CTGATCCGAT
*
20740541 CTTAGCCTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
20740567 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20740593 C
1 C
20740594 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:20741445 original size:26 final size:26
Alignment explanation
Indices: 20741416--20741468 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20741406 CCAGTTCGAT
*
20741416 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20741442 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20741468 C
1 C
20741469 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20742141 original size:867 final size:859
Alignment explanation
Indices: 20739118--20744660 Score: 6601
Period size: 892 Copynumber: 6.4 Consensus size: 859
20739108 TGGGTTTAGG
* *
20739118 TGCATGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
1 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* *
20739183 GTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-AGGA
66 GTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGA-GA
* * * *
20739247 -TTTTAAAAAGTTTTTTTGGAAGGTGTTTTCGCCCAAAACTTGGTAGATGTGATCCTTGTATTTT
130 TTTTTTAAAA-TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTT
*
20739311 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAA
194 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
20739376 AAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTC-AATGCT
259 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
20739440 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
324 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * ** ** * * * * *
20739505 CAGCACCCACCACACATCATGTGCCCACACCCCCCGTTCGTCGGAGCCCCAATGCCGTCGGTAAG
389 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGA--CTCAA-CCCATCGGTCAG
* * *
20739570 GTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGTACTTGCTCG
451 G---T-T--C--T-CT--GACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCG
* * *
20739635 AGCCCAGCATCTGCTACTGTAA-C-C---C---TCGATCTGC-T--C-T-GATCTTAGACTGGGA
505 AGCCCAGCATGTGCTGCCGTAACCTCGTTCAGTTCGATCTGCGTGACTTCGATCTTAGACTGGGA
* * * * * *
20739687 ATGAACTTCGTATGCGTAAGTCAACCCACGAAATGAGCGTGCAGGCACTCAGTCAGCCAGGGGGG
570 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGG
* * * * * *
20739752 CGGGATTCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGGTCCTGCTACCGCAAC
635 CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACAAC
* * * *
20739817 CCTCGGTCCGGTCTAATCTTAGACTGTGAATGAACTCCATATGCATAAGCCAACCGACGAAACAA
700 CCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA
* * * * *
20739882 GCGGGTGGGCGGGCGGGCGGGCACTACGCCAGTTAGAGAGACGGGATGCGCAAGCTAGGCATCGA
762 -C----GAGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCAGGGATCGA
20739947 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
822 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
20739985 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
1 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* * * * * *
20740050 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTGCT-ATTAGGGA
66 GTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTG-TGGTTCGAGA
* *
20740114 TTTTTTAAAATTTTTTTGGAAGGCGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTA
130 TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTT
* * * *
20740179 GTTGGCACGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATATTGTCACCATTTGAAA
195 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
*
20740244 AAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTC
260 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
20740309 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
325 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
20740374 AACACCCATCGCACGTCATGTGCGCACACCCCTCGGCCCCCCCGATCGTCGGAACACCAATGTCG
390 AGCACCCATCGCACATCATGTGCGCACACCCC-CCGACCCCCCGA-C-TC--AAC-CC-A-----
* * * ** * ** *
20740439 TCGGTCTGGTTGTCCGACGATGGTGCCCCGAAAAAGAAAAATGCACCACCAGCACTTGCTCGAGC
443 TCGGTCAGGTTCTCTGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGC
* * * * *
20740504 CCAGCATGTGCTGCCGCAACCTTCATTCTGATCCGATCTTAGCCTGGAAATGAACTCCGTATGCT
508 CCAGCATGTGCTGCCGTAACC-TCGTTCAG-TTCGATC-T-G-C--G---TG-ACTTCG-AT-CT
* * * * *
20740569 TAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCGTGCAGGCGCTCAGCCT
560 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCA
* ** * * *
20740634 GCCAGAGGGGCGGGATGCACAAGCTAGGGATCGACCGTGTCCTCCTCTGCATGCTGTCGATCCTG
625 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGTCGATCCTA
* * * * * * *
20740699 CTGCCGCAACCCTCGATCCGGTTCGATCATAGACTAGGAATGAACTCCGTATGCCTAAGCCAACT
690 CTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
20740764 GACAAAACGAGCTGGCGGCCAGGCTGGCGAGCATTACGTCGCCTAGAGAGACGGGATGCGTAAGC
755 GACGAAACGAGC--G-GG-C--G--GGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGC
* * * * *
20740829 CATGGATC-AGTAGAGTGGTAGGTAGGTTTAGGCACATCTTAATATTTT
812 CAGGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * *
20740877 TGCGTGACAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
1 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* * * * *
20740942 GTTTCAAGGCAAGACGACTCGTTTTCCATTTTTAACGATTTTTGAAACTTTTT-TCGGTTC-AGG
66 GTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGT-GGTTCGA-G
* * * * *
20741005 ATTTTTTAAAATTTTTTCGAAAGGTGTTTTGGCCCCAAACTAGGGAGATGTGATCCTTGTATTTT
129 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTT
* * * *
20741070 TATTGGCATGCAAAAAAAAATTCAGCTACAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAA
194 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
20741135 AAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
259 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
20741200 CTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
324 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
20741265 CAACACCCATCGCACATCATGTGCGCACTCCACCCGACCCCCCGA-TC-A-CC-T-GGTCAGGTT
389 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGACTCAACCCATCGGTCAGGTT
* * * * * *
20741325 CTCTGACGATGGTGCCTCGGTGAAGAGAAATATGGCACCAGCACATGCTCGAGCCTAGCATGTAC
454 CTCTGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGC
20741390 TGCCGTAACCCTCGTTCCAGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
519 TGCCGTAA-CCTCGTT-CAGTTCGATC-T-G-C---G--TG-ACTTCG-AT-CTTAGACTGGGAA
* * * * * *
20741455 TGAACTCCGTATGCCTAAGTCATCCCATGAAACGAGCATGTGGACGCTCAGTCAGCCAGATGGGC
571 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGC
* * * * *
20741520 GGGATGCACAAGCCGGGGATTGGCCGGGTCCCCCTCTGCGTGCAG-CTGATCCTACTGCCACAAC
636 GGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGTC-GATCCTACTGCCACAAC
* * * * *
20741584 CCTCGGTCCGGTCCAATCTTAGTCTGGGAATGAATTCTGTCTGCCTAAGCCAACCGATGAAACGA
700 CCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
20741649 GCGGGCGGGCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCAGGGATCGATAGAGTGG
765 GCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCAGGGATCGATAGGGTGG
20741714 TAGGTGGGTTTAGGCACATCTTCATATTTC
830 TAGGTGGGTTTAGGCACATCTTCATATTTC
*
20741744 TGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
1 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* * * *
20741809 GTTACATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTTGAGAT
66 GTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGAT
*
20741874 TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT-ATCCTTGTATTTTTG
131 TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTG
*
20741938 TTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
196 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
20742003 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCT
261 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
20742068 TTAAGGGGGTGTGAGTTCTCGAGGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
326 TTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
20742133 AGCACCCATCGCACATCATGGGCGCACACCACCCGACCCCCCGTTCAC-CAGAACCCAAATGCCG
390 AGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCG---ACTC--AACCC--AT----
* * *
20742197 CCGGTCAGGTTCTCTGACGATGGTGCCTCGGTGAAGAGAAATACGGCACCAGCACATGCTCGAGC
444 -CGGTCAGGTTCTCTGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGC
* * *
20742262 CCAGCATGTACTACCGCAACC-C--TC-G-T---TC--C-T-A-TTCGATCTTAGACTGGGAATG
508 CCAGCATGTGCTGCCGTAACCTCGTTCAGTTCGATCTGCGTGACTTCGATCTTAGACTGGGAATG
* * * *
20742314 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGATGGGCGG
573 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGCGG
* * * * *
20742379 GATGCGCAAGCCGGGGAT-TAGCTGGGTCCCCCTCTTCGTGCTGTCGATCCTACTACCACAACCC
638 GATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACAACCC
* * * *
20742443 TCGGTCCGGTCCGATCTTAGTCTGGGAATGAACTCTGTCTGCCTAAGCCAACCGACGAAACGAGC
702 TCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
*
20742508 GGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCAGGGATCGATAGGGTGGTA
767 GGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCAGGGATCGATAGGGTGGTA
20742573 GGTGGGTTTAGGCACATCTTCATATTTC
832 GGTGGGTTTAGGCACATCTTCATATTTC
20742601 TGCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
1 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* *
20742665 GTTTCATGGCAAGATGACTCATTTTGTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCGAGAT
66 GTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGAT
*
20742730 TTTCTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGT-ATCCTTGTATTTTTG
131 TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTG
* * *
20742794 TTGGCATGCACAAAACAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAA
196 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
20742859 AAGTGTCCTCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
261 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
20742924 TTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
326 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
20742988 GCACCCACCGTACATCATGTGCACACACCCCCCGACCCCTCCAATCGTCGAAATGCCAATGCCGC
391 GCACCCATCGCACATCATGTGCGCACACCCCCCGACCCC-CCGA-C-TC--AA--CCCAT--CG-
* *** * *
20743053 CGATCAGGTTCTCCGGTAATGGTGCCCCGATGAAGAAAAATTCGGCACCAGCTCATGCTCGAGCC
446 -G-TCAGGTTCTCTGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCC
* * * *
20743118 CAGCATATGCTACCGTAACCCTCGATCCAGTCCGATCTGAGACTAGGAATGAACTAT-GTATGCT
509 CAGCATGTGCTGCCGTAA-CCTCG-TTCAGTTCGATCT--G-C---G--TG-ACT-TCG-AT-CT
* *
20743182 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG-CC
560 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCA
* * **
20743246 GACCAGAGGGGCGGGATGCGCAAGCTGGGGATTGACCGGG-CCCCCTCTGCGCGCTGTCGATCCT
625 G-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGTCGATCCT
* * *** * *
20743310 GCTGCCACAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAAT
689 ACTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
20743375 CGACGAAACGAGCAGGCGGGCGGGCACGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCAT
754 CGACGAAACGAGCGGGCGGGC-GG---GCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCAG
*
20743440 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
815 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
***
20743485 TATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
1 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* * *
20743550 GTTTCATGGCAAGATGACTCCTTTTCTATTTTTTACGATTTTTGAAACTTTTTATGGTTCGAGAT
66 GTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGAT
* * *
20743615 TTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
131 TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTG
* *
20743680 TTGGCATGCACAAAAATATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
196 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
20743745 AAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGTAAACCTGTAAAATCTCAAATGCTCT
261 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *** *
20743810 TTAAGGGGTATGTGAGTTCTCAAGGTTTGATGAGGGATATAAGGCCAATATAAGGGCCAAGTACT
326 TTAAGGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
20743875 AGCACCCATCGCACATCATGTGCGTACACCCCCCAGCCCCCCCGATCGTCTGAACCCTAATGCCG
390 AGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCCGA-C-TC--AACCC--AT-CGG
* * * *
20743940 CCAATGAAGTTCTCTGGCGTTGCTTCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
447 TC-A-G--G-T-TCT--C--TG--AC---GATGGTGCCCCGATGAAGAAAAATACGGCACCAGCA
20744005 CATGC-CTGAGCCCAGCATGTGCTGCCAG-AACC-C--TCA--T---TC--CG-G--TTCGATCT
497 CATGCTC-GAGCCCAGCATGTGCTGCC-GTAACCTCGTTCAGTTCGATCTGCGTGACTTCGATCT
* * *
20744055 TAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
560 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCA
* ** * * * **
20744120 GCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGGCGTGTCCCCATCGGCATGCTACCGATCCTA
625 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGTCGATCCTA
* * * * *** *
20744185 CTGTCGCAACCTTCAGTTTTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
690 CTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
20744250 GATGAAACCAGCGGGCGTGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC-GTGGAT
755 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCAG-GGAT
20744314 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
819 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
20744355 TGCATGCAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACT-TGA
1 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-TGTGA
* * * *
20744419 AGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGAGA
65 AGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGA
* * *
20744484 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTT
130 TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTT
* ** ** * * *
20744549 GTTGGCATGCATAAAAAAATTCAGCTAAAAACAAGAAGTGTACAAGATTTCATCATCATTATAAA
195 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT-TGAA
*
20744614 AAAACTGTCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACC
259 AAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACC
20744661 AGTGGGCGGG
Statistics
Matches: 4098, Mismatches: 425, Indels: 302
0.85 0.09 0.06
Matches are distributed among these distances:
852 5 0.00
853 1 0.00
854 76 0.02
855 93 0.02
856 300 0.07
857 295 0.07
858 3 0.00
859 4 0.00
860 2 0.00
861 1 0.00
862 1 0.00
865 2 0.00
866 220 0.05
867 598 0.15
868 113 0.03
869 10 0.00
870 311 0.08
871 51 0.01
872 3 0.00
873 103 0.03
874 95 0.02
875 271 0.07
876 14 0.00
877 10 0.00
878 4 0.00
879 4 0.00
880 102 0.02
881 97 0.02
882 3 0.00
883 80 0.02
884 95 0.02
885 159 0.04
886 143 0.03
887 6 0.00
888 99 0.02
889 10 0.00
890 7 0.00
891 13 0.00
892 630 0.15
894 3 0.00
897 1 0.00
898 3 0.00
899 56 0.01
900 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (859 bp):
TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
GTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGAT
TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGACTCAACCCATCGGTCAGGTTCT
CTGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG
CCGTAACCTCGTTCAGTTCGATCTGCGTGACTTCGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGCCG
GGGATCGACCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACAACCCTCGGTCCGGTCCAA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAC
TACGCCGGCTAGAGAGACGGGATGCGCAAGCCAGGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTC
Found at i:20743204 original size:26 final size:26
Alignment explanation
Indices: 20743157--20743206 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20743147 GTCCGATCTG
*
20743157 AGACTAGGAATGAACTATGTATGCTT
1 AGACTAGGAATGAACTACGTATGCTT
* *
20743183 AGACTGGGAATGAACTCCGTATGC
1 AGACTAGGAATGAACTACGTATGC
20743207 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTAGGAATGAACTACGTATGCTT
Found at i:20745371 original size:26 final size:26
Alignment explanation
Indices: 20745335--20745413 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20745325 CTGGTCCAAT
20745335 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
20745361 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
20745387 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
20745413 C
1 C
20745414 CTAAAGTGTC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:20747342 original size:25 final size:26
Alignment explanation
Indices: 20747314--20747363 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20747304 CCGGTCCTAT
20747314 CTTAGACT-GGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
20747339 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
20747364 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:20748222 original size:26 final size:26
Alignment explanation
Indices: 20748193--20748245 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20748183 CCGATCTGAT
20748193 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20748219 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20748245 C
1 C
20748246 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20749875 original size:26 final size:26
Alignment explanation
Indices: 20749839--20749891 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20749829 CCAGTTCGAT
20749839 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20749865 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20749891 C
1 C
20749892 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20750744 original size:25 final size:26
Alignment explanation
Indices: 20750709--20750760 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20750699 CCGGTCTGAT
20750709 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20750734 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20750760 C
1 C
20750761 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20751074 original size:869 final size:872
Alignment explanation
Indices: 20749730--20755792 Score: 5632
Period size: 869 Copynumber: 6.9 Consensus size: 872
20749720 ATGCTGCCGG
* * *
20749730 TCAGGTTCTCTGGAGATGCCCT-AGCGATGGTGCCCCGACGAAGAAAAATGCGGTACCAGCACAT
1 TCAGGTTCTCTGGCGATGCTCTGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * *
20749794 GCCCGAGCCTAGCATGTGCTGCCGTAATCCTCGGTCCAGT-TCGATCTTAGACTGGGAATGAACT
65 G-CTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACT
* * * * * *
20749858 CTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAACATGCAGGC
128 C-CTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * ** *
20749923 ACTCAACCAGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATTGGGT-CCTCGTCTGCATGCT
192 GCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCC-GGGATCG-TCAGGTGCC-CCTCTGCATGCT
* * *
20749987 GTCGATCTTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCC
254 GTCGATCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* *
20750052 TAAGCCAATCGATGAAACGAGCGGGC-GGACGGGCGGGCGGGCACTACGCCGACCAGAGAGACGG
319 TAAGCCAACCGATGAAACGAGCGGGCAGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* * ** * *
20750116 GTTACGCAAGATGTGGATCGATAGGTTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCATG
383 GATGCGCAAGCCGTGGATCGATAGG-TGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTACATG
* * *
20750181 CCAATTCTATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCA
446 CCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * * *
20750246 TGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTA
511 TGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGGTTCGGGAATTTTTA
* * ** **
20750311 AAATTTTTTTAG-AAGGAGTTTTGGCCCCAAACTTTTTAGATGTGATCCTTGT-TTTTTTGTTGG
576 AAATTTTTTCAGAAAGG-GTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTT-TTGG
* * * *
20750374 CATGCATAAAAAAATTCAGCTAAAAACTCGAAGGGTATAAGATTTTGTGACCATTTTGAAAAAAG
639 CATGCATAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAGAAG
* * * *
20750439 TGTCCCCATTTCAGACACTTTGATGGCTACTGGTAGCAAACCTATAAAATCTCAAATCCTCTTTA
703 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATCCTCTTTA
* * * * *
20750504 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATATGGGGCCAATATAAGGGCCAAGTACCCG-A
768 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAATACCAGCA
*
20750568 CCC-C-C-CA-A-T-C-AT-CGAAACCCCAGTGCCATCAA
833 CCCACGCACACAGTCCGATCCGAAACCCCAATGCCATCAA
* * * * *
20750600 TCAGGTTCTCTGGCGATGCTCTGACGATGGTGGCCTGACGAAGAAAAATACGGCCCCAACACATG
1 TCAGGTTCTCTGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
20750665 CTTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
66 C-TGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* * *
20750730 TATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
130 TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* *
20750795 CAACCGGCCAGAGGGGCGGGATGCGTAAGCCGGTGATCAGTCAGGTGCCCCTCTACATGCTATCG
195 CAACCGGCCAGAGGGGCGGGATGCGTAAGCCGG-GATC-GTCAGGTGCCCCTCTGCATGCTGTCG
* * * *
20750860 ATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCAAAG
258 ATCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*
20750925 CCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGC
323 CCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
20750990 ACAAGCCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTACGTGCCAAT
388 GCAAGCCGTGGATCGATAG-GTGGTAGGTGGGTTTAGGCACATCTTCATAT-TCTACATGCCAAT
*
20751055 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
451 GCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
20751120 AGACGACTCTTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGGTTCGGGAATTTTTAAAATT
516 AGACGACTCTTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGGTTCGGGAATTTTTAAAATT
20751185 TTTTCAGAAAGGGTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAT
581 TTTTCAGAAAGGGTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAT
20751250 AAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCA
646 AAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCA
* * * * *
20751315 TTTCAGACACTTTAACGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTA
711 TTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTG
*
20751380 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAATACCAGCACCCATCGC
776 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAATACCAGCACCCA-CGC
* **
20751445 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGAAACCCCAATGTCATCGG
840 ACA-CA-GT-------------------CCGAT--CCGAAACCCCAATGCCATCAA
* * * * * * * **
20751501 TCAGGTTCTCCGACGATGCTCCGGCAATGGTGCCCCAACGAA-AAGAAATGCGACACCAGCATGT
1 TCAGGTTCTCTGGCGATGCTCTGACGATGGTGCCCCGACGAAGAA-AAATGCGGCACCAGCACAT
* * ** * **
20751565 GGCTAAGCCCAGCATGTGCT-CCTGCAACCCTTGGTTTGATCCAATCTTAGACTGGGAATGAACT
65 -GCTGAGCCCAGCATGTGCTGCC-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
* *
20751629 CCGTATGCTCAGACT-GGAATGAACTATGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
128 CC-TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * ** * * * * *
20751693 GCTCAGCCGGCAAGAGGGGCGGGATGCACAAGCTGAGGATCGACTGG-GTCCCCTTCTGCGTGTT
192 GCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCG-GGATCGTCAGGTG-CCCC-TCTGCATGCT
* *
20751757 GTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCC
254 GTCGATCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
20751822 TAAGCCAACCGACGAAAC-A------A-GCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
319 TAAGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * *
20751879 ATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATAACTTCATATTTTCACATGC
384 ATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTCT-ACATGC
20751944 CAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
447 CAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
20752009 GGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGGTTCGGGAATTTTTAA
512 GGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGGTTCGGGAATTTTTAA
20752074 AATTTTTTCAGAAAGGGTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
577 AATTTTTTCAGAAAGGGTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
20752139 GCATAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTC
642 GCATAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTC
20752204 CCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCC-CTTTAAGG
707 CCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAAT-CCTCTTTAAGG
* *
20752268 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGTCCAAATACCAGCACCC
771 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAATACCAGCACCC
* * *** * *
20752333 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGAT--CACTGAAA
836 A-CGCACA-CA-GT-C-C-GA---TCCGAAACCC-CAATGCCA-T-CAA
* * * * * * * * * *
20752380 CCCCA-ATGTCACCGGTCAGGTTCTCCGACGATGGTGCCACGACGAAGAGAAATGCGACACCAGC
1 --TCAGGT-TCTCTGG-C-GATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * **
20752444 ACATGGCCGAGCCCAGCATGTGGTACCATAA-CC-C--T-C-G---G----T---CT--G---G-
61 ACAT-GCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
* * * *
20752487 --TCCAAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAATGAGCGTGCGG
125 ACTCCTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * ** *
20752549 GCGCTC-A---GCC------G-GGGAT-C---AGTCGGG-TCCCCCTCTGCGTGCTACCGAT-CT
190 GCGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCGGGAT---CGTCAG-GTGC-CCCTCTGCA
* * * ** * *
20752597 TGCTGCCGTAACC--CT-CGATC--CGGTCTGATCT----------TAGACTGGGAATAAACTCC
250 TGCTGTCG-ATCCTGCTGCCA-CAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCC
* * * * * * *
20752647 GTATACCTAAGCCAACCGACGAAACGAGCAGACGGGCGGGCGGGCGGGCACTACGTCGGCCAAAG
312 GTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
* * *
20752712 AGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTC
377 AGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTC
* * *
20752777 TGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
440 TACATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * ** ** * * *
20752842 GTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCACAATTTTGGAAACTTTTTACGGTTCAGGAT
505 GTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGGTTCGGGAA
* *** * * *
20752907 TTTTTAAAATTTTGTT-GGAAATATTTTTGGCCCCAAACTTGGTAGACAAGATCCTTTTATTTTT
570 TTTTTAAAATTTT-TTCAGAAAGGGTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
* * * *
20752971 TTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGGGTACAAGTTTTTGTGACCATTTAAAA
634 TTTGGCATGCATAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* ** * *
20753036 AAAGTGTCCCCATTTCAGATGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
699 GAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATCCTC
** * * *
20753101 TTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCC
764 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAATACC
* * *
20753166 AGCACCCATCGCACATCATGTGTGCACCCCCTCCCCGGCCTCTCGATCGCCAGAACCGCATTGCC
829 AGCACCCA-CG--CA-CA------CA-----------G--TC-CGATC-CGA-AACCCCAATGCC
* *
20753231 GTCGA
868 ATCAA
* * * * * **
20753236 TCAGGTGCTCCGACGATGCTC-CAGCGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACAT
1 TCAGGTTCTCTGGCGATGCTCTGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* *
20753300 GCTCGAGCCCAACATGTGCTGCCGCAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAA---
65 GCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
*
20753362 C--T-C-----C-------G----C---ATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGC
129 CTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * *
20753405 TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATC-GGTTCCCCCTCTGCGTGCTGC
194 TCAACCGGCCAGAGGGGCGGGATGCGTAAGCC-GGGATCG-TCAGG-TGCCCCTCTGCATGCTGT
* * * * *
20753469 CGATCCTGCT-CACGCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGGACTCCGTATGCCT
256 CGATCCTGCTGC-CACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
20753533 AAGCCAACCGAAGAATCGTGCGGGCA----AGCGGGCGGGCACTACGCCGACCAGAGAGACGGGA
320 AAGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *
20753594 TGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
385 TGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTACATGCC
*
20753659 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
448 AATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
20753724 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAA
513 GCAAGACGACTCTTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGGTTCGGGAATTTTTAAA
* * *
20753789 ATTTTTGT--GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
578 ATTTTT-TCAGAAAGG-GTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCA
* * * *
20753852 TGC-TCAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTG
641 TGCAT-AAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTG
* * * * * * *
20753916 TCCCCATTTCAGACACTTTAATGGCTGCTAGCAGCAACCCTATAAAATCTGAAATGCTCTTTAAG
705 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATCCTCTTTAAG
* * *** *
20753981 GGGGTGTGAGTTCTCAAGGTTTGATGAGGAATAGGGGGCCAACGTAAGGGCCAAGTACCAGCACC
770 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAATACCAGCACC
* * * * *
20754046 CATCGCACATCATGTGCGCACACCCCCCCGATTGTAGGAACCCTAATGCCGTCGA
835 CA-CGCACA-CA-GT-C-C-GA----TCC----G-A--AACCCCAATGCCATCAA
**** * * *
20754101 TCAGGTTCTCCAATGATGCTCCGACGATGGTGCCCCGACGAAGAGAAATGCGTCACCAGCACATG
1 TCAGGTTCTCTGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * ** ** *
20754166 CTCGAGCCCAACATGCGCTGCCGTAACCCTCGGTCCTATCCAATCTTAGACTAGGAATGAACTCC
66 CT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* * * * * *
20754231 GTATGCTTATACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCAC
130 -TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * * *
20754296 TCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATGGGCTGG-GTCCCCATCTGCATGCTGC
194 TCAACCGGCCAGAGGGGCGGGATGCGTAAG-CCGGGATCGTCAGGTG-CCCC-TCTGCATGCTGT
* * ** ** * *
20754360 CGATCCTACTG-TAGCAACCCTTGGTCCAGTCTGAGCTTAGACTGGGAATGAACTCCGTATGCCT
256 CGATCCTGCTGCCA-CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
20754424 AAGCCAACCGACG-AA--A---GG-A-----GCGGGCGGGCACTACGCTGGCCAGAGAGATGGGA
320 AAGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *** *
20754477 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTTCC
385 TGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTACATGCC
* *
20754542 AATGCCATTTTTATGGCTTGTAGATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
448 AATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * *
20754607 GCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCAAAACATTTTACGGTTCAGGATTTTTTAA
513 GCAAGACGACTCTTTTTCTATTTTTCATGATTTTTC-AAACTTTTTATGGTTCGGGAATTTTTAA
** * * * * * * *
20754671 AATTTTTTTTGGATGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTAGGCA
577 AATTTTTTCAGAAAGG-GTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCA
* * * *
20754736 TGCACAAAAAAATTCAACTA-AAAGCTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAAGT
641 TGCATAAAAAAATTCAGCTAGAAA-CTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAGAAGT
* * **
20754800 GTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAA
704 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATCCTCTTTAA
* * * *
20754865 -GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCAC
769 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAATACCAGCAC
* * ** *
20754929 CCGTCGCACATCATGTGTGGACACCCCCCCCATTCCCCCCGATCACCGGAACCCCAATGCCGCCG
834 CC-ACGCACA-CA------G-------------T----CCGAT--CCGAAACCCCAATGCCATCA
*
20754994 G
872 A
* * * * * * *
20754995 TCAGGTTCTCCGACGATGCTCCGACGATAGTGCCACGACGAAGAAAATTGTGGCACCAGCACATG
1 TCAGGTTCTCTGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * * *
20755060 TCCGAGCCCAGCATGGGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCC
66 -CTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* * * * * * * *
20755125 GTATGCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGTGTGTGAGCGC
130 -TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * *
20755190 TCAGCCGGCCAGAGGGGCAGGATGCATAAGCCGAGGATCAGTCGGGTCCCCCTCTGCATGTTGTC
194 TCAACCGGCCAGAGGGGCGGGATGCGTAAGCCG-GGATC-GTCAGGTGCCCCTCTGCATGCTGTC
* * *
20755255 GATCCTACTACCACAACCCTCAGTCTGGTCCGATATTAGACTGGGAATGAACTCCGTATGCCTAA
257 GATCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
20755320 GCCAACTGATGAAACGAGC--G--GGCGAGCGGGCAGGCACTACGTCGGCTAGAGAGACGGGATG
322 GCCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * *
20755381 CGCCAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
387 CGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTACATGCCAA
* * * * * *
20755446 AGCCATTTTTATGGCTTGTAAATTCATGCAGTGGTCCCTTAAGCCATCACATGAAGTTTCATGGC
450 TGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * ** * * *
20755511 AAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTAGAGATTTTTTAAAAT
515 AAGACGACTCTTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGGTTCGGGAATTTTTAAAAT
* * * *
20755576 TTTTT-TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTTGGCTTG
580 TTTTTCAGAAAGG-GTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTTTTGGCATG
* * * *
20755640 CACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCTGAAA-CA-TGTC
643 CATAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATT-TGAAAGAAGTGTC
* * * * * * *
20755703 CCCA-GTCAGAGCA-TTTCAGGGCTACTAGCAG-TAACCTAT-AAATCTCAAATGCTC-TT--GG
707 CCCATTTCAGA-CACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATCCTCTTTAAGG
* *
20755761 GGCTGTGAGTTTCTCGAGGTTTGATGTGGGAT
771 GGGTGTGAG-TTCTCGAGGTTTGATGAGGGAT
20755793 GAGAGGCAAA
Statistics
Matches: 4385, Mismatches: 533, Indels: 524
0.81 0.10 0.10
Matches are distributed among these distances:
832 42 0.01
833 1 0.00
839 1 0.00
840 444 0.10
841 10 0.00
842 9 0.00
843 8 0.00
844 11 0.00
845 6 0.00
846 4 0.00
847 5 0.00
848 3 0.00
851 3 0.00
852 93 0.02
853 3 0.00
854 10 0.00
855 5 0.00
856 10 0.00
857 11 0.00
858 55 0.01
859 7 0.00
860 2 0.00
861 1 0.00
862 2 0.00
863 4 0.00
864 2 0.00
865 131 0.03
866 17 0.00
867 11 0.00
868 135 0.03
869 497 0.11
870 128 0.03
871 8 0.00
872 4 0.00
873 9 0.00
874 446 0.10
875 2 0.00
876 1 0.00
877 5 0.00
878 51 0.01
879 4 0.00
880 1 0.00
881 7 0.00
882 8 0.00
883 278 0.06
884 170 0.04
885 68 0.02
888 1 0.00
889 1 0.00
890 6 0.00
891 145 0.03
892 3 0.00
893 482 0.11
894 287 0.07
895 21 0.00
896 22 0.01
897 17 0.00
898 9 0.00
899 20 0.00
900 23 0.01
901 322 0.07
902 281 0.06
903 10 0.00
904 1 0.00
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
TCAGGTTCTCTGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
CTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCT
ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AACCGGCCAGAGGGGCGGGATGCGTAAGCCGGGATCGTCAGGTGCCCCTCTGCATGCTGTCGATC
CTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGATGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCTACATGCCAATGCTAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCTTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGGTTCGGGAATTTTTAAAATTTTTTC
AGAAAGGGTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAA
AATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAATACCAGCACCCACGCACACAG
TCCGATCCGAAACCCCAATGCCATCAA
Done.